Sequence	K Count	R Count	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Gene Names	Protein Names	Unique (Groups)	Unique (Proteins)	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Fraction 3	Fraction 4	Fraction 5	Fraction 6	Fraction 7	Fraction 8	Fraction 9	Fraction 10	Fraction 11	Fraction 12	Fraction 13	Fraction 14	Fraction 15	Fraction 16	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Ratio H/L	Ratio H/L normalized	Ratio H/L variability [%]	Ratio H/L count	Ratio H/L iso-count	Ratio H/L type	Intensity	Intensity L	Intensity H	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count	Taxonomy IDs
AAAAAAALQAK	1	0	Unmodified	955.54508	0.5450795	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	1	0	1																10.873	10.873	2	0.00041138	2856	DP690-1	116.37	79.212			0.99353	0.99216	NaN	1	0	Median	3388500	1671700	1716800	0	681	0	0	0;1	0		2	9606
AAAAAAGAGPEMVR	0	1	Acetyl (Protein N-term);Oxidation (M)	1299.6241	0.62413446	610	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	1	1	0	6	0						1											14.586	14.586	2	0.00080479	7755	DP690-6	91.701	46.543			0.70742	0.79978	NaN	1	0	Median	19244000	10989000	8254900	1	610	1	1	2;3;4	4	845	3	9606
AAAAAATAAAAASIR	0	1	Acetyl (Protein N-term)	1298.6943	0.69426293	1749	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	1	0	0	12	0												2					21.21	21.21	2	0.0069177	17352	DP690-12	97.734	42.752			NaN	NaN	NaN	0	0	Median	0	0	0	2	1749	2	2;3	5;6	5		2	9606
AAAAAATAPPSPGPAQPGPR	0	1	Unmodified	1754.9064	0.90638097	1503	Q6SPF0	SAMD1	Atherin	yes	yes	0	0	0	12	0												1					12.033	12.033	2	4.5875E-10	4894	DP690-12	174.72	116.13			NaN	NaN	NaN	0	0	Median	3503000	3503000	0	3	1503	3	4	7;8	8		2	9606
AAAAASHLNLDALR	0	1	Acetyl (Protein N-term)	1434.7579	0.75792582	1177	Q13049	TRIM32	E3 ubiquitin-protein ligase TRIM32	yes	yes	1	0	0	11	0											1						18.916	18.916	2	0.021494	15052	DP690-11	80.17	36.535			NaN	NaN	NaN	0	0	Median	0	0	0	4	1177	4	5	9	9		1	9606
AAAAAWEEPSSGNGTAR	0	1	Unmodified	1644.7492	0.74921163	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	9.11	3.93				3					1	1	1	1		2			13.199	13.199	2	9.1208E-23	6500	DP690-12	256.96	229.32			0.93606	1.0938	4.9936	2	0	Median	398420000	233220000	165200000	5	2298	5	6;7;8;9;10;11;12;13;14	10;11;12;13;14;15;16;17;18;19;20;21;22;23;24;25;26;27	15		18	9606
AAAAVGAGHGAGGPGAASSSGGAR	0	1	Acetyl (Protein N-term)	1905.9041	0.90414914	1886	Q96K37	SLC35E1	Solute carrier family 35 member E1	yes	yes	1	0	0	9.33	0.471									2	1							12.245	12.245	2	3.248E-75	5473	DP690-10	323.16	290.16			0.596	0.74362	NaN	1	0	Median	26558000	16606000	9952200	6	1886	6	15;16;17	28;29;30;31;32;33	31		6	9606
AAADGDDSLYPIAVLIDELR	0	1	Acetyl (Protein N-term)	2158.0794	0.079379118	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	1	0	0	4	0				1													30.16	30.16	2	9.2473E-07	21358	DP690-4	148.72	95.193			NaN	NaN	NaN	0	0	Median	181240	0	181240	7	624	7	18	34;35	35		2	9606
AAADGGGPGGASVGTEEDGGGVGHR	0	1	Acetyl (Protein N-term)	2178.9526	0.95261548	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	1	0	0	10.8	1.67									2	1	1		2				13.434	13.434	2	7.0034E-111	7178	DP690-10	377.05	367.4			0.77446	0.93885	3.5995	3	0	Median	203570000	121920000	81651000	8	13	8	19;20;21;22;23;24	36;37;38;39;40;41;42;43;44;45;46;47;48;49;50;51	41		16	9606
AAAEIYEEFLAAFEGSDGNK	1	0	Unmodified	2130.9746	0.9745797	133	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	10.5	0.5										1	1						24.939	24.939	2	0.0086734	22990	DP690-10	107.61	57.401			NaN	NaN	NaN	0	0	Median	0	0	0	9	133	9	25;26	52;53	52		2	9606
AAAFEEQENETVVVK	1	0	Unmodified	1662.8101	0.81008055	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															14.891	14.891	2	2.1003E-05	7604	DP690-2	149.96	122.48			1.4381	1.4185	NaN	1	0	Median	2616800	1074500	1542400	10	2482	10	27	54;55;56;57	56		4	9606
AAAGEFADDPCSSVK	1	0	Unmodified	1523.6562	0.65622244	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											1						13.821	13.821	2	4.9008E-05	7627	DP690-11	125.36	106.83			0.79338	0.96169	NaN	1	0	Median	70671000	34154000	36517000	11	657	11	28	58;59;60;61;62	61		5	9606
AAAGEFADDPCSSVKR	1	1	Unmodified	1679.7573	0.75733347	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	1	11	0											1						12.498	12.498	3	0.00072431	5706	DP690-11	84.759	65.971			0.62368	0.74768	NaN	1	0	Median	69879000	37434000	32445000	12	657	12	29	63	63		1	9606
AAAGGQGSAVAAEAEPGKEEPPAR	1	1	Unmodified	2220.0771	0.077087707	2077	Q9GZT9	EGLN1	Egl nine homolog 1	yes	yes	0	0	1	13	0													1				11.87	11.87	3	0.00016449	4528	DP690-13	139.2	127.33			0.74469	0.92069	NaN	1	0	Median	24931000	13387000	11544000	13	2077	13	30	64;65;66;67	65		4	9606
AAAGQESEGPAVGPPQPLGK	1	0	Unmodified	1859.9377	0.93774068	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	10	0										2							14.266	14.266	2	1.2547E-13	8372	DP690-10	180.95	152.72			0.49844	0.61208	NaN	1	0	Median	47440000	20357000	27083000	14	103	14	31;32	68;69;70;71;72;73	70		6	9606
AAALVLQTIWGYK	1	0	Unmodified	1432.8078	0.80783613	216	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	11	0											1						21.408	21.408	2	9.8494E-05	18520	DP690-11	123.79	108.59			1.326	1.6213	NaN	1	0	Median	23600000	11583000	12017000	15	216	15	33	74;75;76	76		3	9606
AAAMDVDTPSGTNSGAGK	1	0	Acetyl (Protein N-term);Oxidation (M)	1706.7417	0.74174299	1000	P62877	RBX1	E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed	yes	yes	1	1	0	12	4								1								1	13.297	13.297	2	8.8655E-18	6308	DP690-16	210.93	159.49			1.4217	1.6502	69.794	2	0	Median	16218000	8172700	8044900	16	1000	16	34;35	77;78;79;80;81;82	79	1521	6	9606
AAAMDVDTPSGTNSGAGKK	2	0	Acetyl (Protein N-term);Oxidation (M)	1834.8367	0.83670601	1000	P62877	RBX1	E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed	yes	yes	1	1	1	12	4								1								1	11.356	11.356	2	9.2362E-12	3909	DP690-16	162.31	126.65			0.79846	0.91668	NaN	1	0	Median	11567000	5654800	5912600	17	1000	17	36;37	83;84;85;86;87;88;89	85	1521	7	9606
AAAPAPEEEMDECEQALAAEPK	1	0	Oxidation (M)	2372.0148	0.014806305	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	1	0	13	0													1				15.354	15.354	2	4.225E-10	9056	DP690-13	159.18	147.26			0.69094	0.77708	NaN	1	0	Median	156840000	91657000	65183000	18	598	18	38	90;91;92;93	92	795	4	9606
AAAPAPEEEMDECEQALAAEPK	1	0	Unmodified	2356.0199	0.019891683	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	13	0													1				17.825	17.825	2	4.4143E-19	12542	DP690-13	181.75	167.41			0.7288	0.82925	NaN	1	0	Median	116020000	63633000	52383000	19	598	18	39	94;95;96;97	97		4	9606
AAAPQAWAGPMEEPPQAQAPPR	0	1	Oxidation (M)	2286.0851	0.085149973	1365	Q16643	DBN1	Drebrin	yes	yes	0	1	0	11	0											2						15.103	15.103	2	1.9144999999999998E-19	9411	DP690-11	192.4	192.4			0.44464	0.53586	NaN	1	0	Median	105040000	66528000	38509000	20	1365	19	40;41	98;99;100;101;102;103;104;105;106;107	98	2109	10	9606
AAAPQAWAGPMEEPPQAQAPPR	0	1	Unmodified	2270.0902	0.090235351	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	0	11.5	0.5											1	1					16.662	16.662	2	1.0069000000000001E-41	11681	DP690-11	254.94	234.2			0.49543	0.57815	NaN	1	0	Median	159260000	101900000	57354000	21	1365	19	42;43	108;109;110;111;112;113	108		6	9606
AAAQLLQSQAQQSGAQQTK	1	0	Unmodified	1956.0025	0.0024662011	2231	Q9NVA2	SEPT11	Septin-11	yes	yes	0	0	0	11	2									1				1				13.211	13.211	2	9.4386E-51	6216	DP690-13	330.68	306.4			0.78198	0.89515	NaN	1	0	Median	99206000	53525000	45680000	22	2231	20	44;45	114;115;116;117;118	117		5	9606
AAASAPSSLLDQPCLCPAPSVR	0	1	Unmodified	2267.1038	0.1038365	1810	Q969S8	HDAC10	Histone deacetylase 10	yes	yes	0	0	0	4	0				1													18.115	18.115	2	8.412E-15	12547	DP690-4	182.37	182.37			0.62566	0.72746	NaN	1	0	Median	7513600	4889600	2624000	23	1810	21	46	119;120;121;122;123	120		5	9606
AAASGQPRPEMQCPAEHEEDMYR	0	2	2 Oxidation (M)	2691.1112	0.11118308	1827	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	yes	yes	0	2	1	6	0						1											10.814	10.814	4	0.017444	3286	DP690-6	46.415	30.006			0.92521	0.99509	NaN	1	0	Median	3449800	1737500	1712300	24	1827	22	47	124	124	2405;2406	1	9606
AAASVTPPGSLELLQPGFSK	1	0	Acetyl (Protein N-term)	2011.0626	0.062606842	1172	Q12933	TRAF2	TNF receptor-associated factor 2	yes	yes	1	0	0	4	0				1													22.765	22.765	2	0.019235	17746	DP690-4	59.607	59.607			0.79244	0.83837	NaN	1	0	Median	1074600	589600	484990	25	1172	23	48	125	125		1	9606
AAATGPSFWLGNETLK	1	0	Acetyl (Protein N-term)	1703.8519	0.85188578	478	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	1	0	0	4	0				4													22.923	22.923	2	0.012191	17807	DP690-4	90.614	52.211			NaN	NaN	NaN	0	0	Median	0	0	0	26	478	24	49;50;51;52	126;127;128;129	127		4	9606
AAAYLDPNLNHTPNSSTK	1	0	Acetyl (Protein N-term)	1954.9385	0.93846896	1117	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	1	0	0	7	4			1								1						17.197	17.197	2	0.0016527	12656	DP690-11	127.71	67.117			NaN	NaN	NaN	0	0	Median	6199700	6199700	0	27	1117	25	53;54	130;131;132	130		3	9606
AAAYNLVQHGITNLCVIGGDGSLTGANIFR	0	1	Unmodified	3101.5717	0.57165196	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	11	0											1						21.547	21.547	3	0.00014294	18705	DP690-11	86.89	61.087			NaN	NaN	NaN	0	0	Median	11824000	11824000	0	28	518	26	55	133;134	133		2	9606
AAAYSAQVQPVDGATR	0	1	Unmodified	1603.7954	0.79543354	2132	Q9H7E9	C8orf33	UPF0488 protein C8orf33	yes	yes	0	0	0	15	0															1		13.239	13.239	2	3.4804999999999998E-22	6389	DP690-15	251.75	220.12			0.97453	1.087	NaN	1	0	Median	78313000	37760000	40554000	29	2132	27	56	135;136;137;138	136		4	9606
AACQEAQVFGNQLIPPNAQVK	1	0	Unmodified	2282.1478	0.14775023	1406	Q53H12	AGK	Acylglycerol kinase, mitochondrial	yes	yes	0	0	0	13	0													1				18.348	18.348	2	0.02842	13266	DP690-13	90.229	54.929			NaN	NaN	NaN	0	0	Median	0	0	0	30	1406	28	57	139	139		1	9606
AACSSSEEDDCVSLSK	1	0	Unmodified	1743.6927	0.69274388	2080	Q9H019	MTFR1L	Mitochondrial fission regulator 1-like	yes	yes	0	0	0	14	0														1			12.608	12.608	2	0.013696	5565	DP690-14	113.24	81.081			NaN	NaN	NaN	0	0	Median	0	0	0	31	2080	29	58	140	140		1	9606
AADAEAEVASLNR	0	1	Unmodified	1315.6368	0.63680763	398	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	0	15	0.816														1	1	1	13.751	13.751	2	7.4246E-10	7018	DP690-15	242.12	184.53			0.66497	0.77355	5.6812	3	0	Median	692290000	377060000	315230000	32	398	30	59;60;61	141;142;143;144;145;146;147;148;149	145		9	9606
AADAEAEVASLNRR	0	2	Unmodified	1471.7379	0.73791866	398	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	1	12.3	3.77							1								2		12.587	12.587	2;3	8.2368E-15	5500	DP690-15	233.09	185.89			0.7685	0.83366	9.1459	3	0	Plateau	539150000	296560000	242580000	33	398	31	62;63;64	150;151;152;153;154;155;156;157;158;159;160;161;162;163	157		14	9606
AADEEAFEDNSEEYIR	0	1	Unmodified	1886.7806	0.78063091	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														16.836	16.836	2	1.2772E-39	11053	DP690-3	322.07	283.11			1.1115	1.279	NaN	1	0	Median	17452000	8915100	8536800	34	892	32	65	164;165;166;167	164		4	9606
AADEEAFEDNSEEYIRR	0	2	Unmodified	2042.8817	0.88174194	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	3	0			1														15.362	15.362	3	0.00022523	9138	DP690-3	95.981	76.993			0.89174	0.92248	NaN	1	0	Median	29878000	14607000	15271000	35	892	33	66	168;169;170;171;172	172		5	9606
AADFQLHTHVNDGTEFGGSIYQK	1	0	Unmodified	2534.1826	0.18261541	2433	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	14	0														2			15.817	15.817	3;4	0.00034146	10002	DP690-14	94.72	78.004			0.89425	1.0728	3.649	2	0	Median	153080000	80842000	72234000	36	2433	34	67;68	173;174;175;176;177	173		5	9606
AADIDQEVKER	1	1	Unmodified	1272.631	0.63099397	1576	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	1	3	0			1														10.986	10.986	3	0.00082531	3438	DP690-3	108.9	67.62			1.0793	1.1971	NaN	1	0	Median	9141400	3868000	5273400	37	1576	35	69	178;179	178		2	9606
AADIGVAMGQTGTDVCK	1	0	Oxidation (M)	1708.776	0.77602	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	1	0	11	0											1						13.231	13.231	2	3.2311E-05	6732	DP690-11	126.5	93.46			0.91034	1.1077	NaN	1	0	Median	36964000	20139000	16825000	38	1068	36	70	180;181;182	180	1659	3	9606
AADIGVAMGQTGTDVCK	1	0	Unmodified	1692.7811	0.78110538	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	11	0											2						15.312	15.312	2	0.021605	9850	DP690-11	135.04	96.408			NaN	NaN	NaN	0	0	Median	0	0	0	39	1068	36	71;72	183;184	184		2	9606
AADISESSGADCK	1	0	Acetyl (Protein N-term)	1351.5562	0.55617405	181	O43583	DENR	Density-regulated protein	yes	yes	1	0	0	15	0															3		13.997	13.997	2	0.00069146	7425	DP690-15	124.42	63.261			NaN	NaN	NaN	0	0	Median	7508000	7508000	0	40	181	37	73;74;75	185;186;187;188	187		4	9606
AADISESSGADCKGDPR	1	1	Acetyl (Protein N-term)	1776.7585	0.75845568	181	O43583	DENR	Density-regulated protein	yes	yes	1	0	1	11	4							1								1		13.002	13.002	2	1.9414E-08	6011	DP690-15	182.37	172.94			0.80979	0.87984	20.014	2	0	Median	83041000	42315000	40727000	41	181	38	76;77	189;190;191;192;193;194;195;196;197;198	192		10	9606
AADISLDNLVEGK	1	0	Unmodified	1343.6933	0.69325988	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	10	0										1							18.978	18.978	2	0.048392	15248	DP690-10	89.266	50.963			NaN	NaN	NaN	0	0	Median	0	0	0	42	1167	39	78	199	199		1	9606
AADKLIQNLDANHDGR	1	1	Unmodified	1749.8758	0.87580912	1854	Q96FQ6	S100A16	Protein S100-A16	yes	yes	0	0	1	8	0								2									13.117	13.117	3;4	0.0011157	5949	DP690-8	78.69	56.363			4.3695	5.0805	NaN	1	0	Median	6629900	1206300	5423600	43	1854	40	79;80	200;201;202	201		3	9606
AADLNLEWISLPR	0	1	Acetyl (Protein N-term)	1538.8093	0.80929269	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	1	0	0	10	0										1							25.228	25.228	2	0.0033365	23361	DP690-10	103.91	40.215			NaN	NaN	NaN	0	0	Median	0	0	0	44	2155	41	81	203	203		1	9606
AADSDDGAVSAPAASDGGVSK	1	0	Unmodified	1846.8181	0.81807905	1863	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	8	4				1								1					12.303	12.303	2	5.6416E-48	5172	DP690-12	285.81	245.8			0.87401	0.98692	7.8915	2	0	Median	52496000	28342000	24155000	45	1863	42	82;83	204;205;206;207;208	206		5	9606
AADTQVSETLKR	1	1	Acetyl (Protein N-term)	1359.6994	0.69940789	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	1	0	1	6	4		1								1							14.01	14.01	2	0.00073069	6482	DP690-2	126.71	40.846			0.97654	1.1974	NaN	1	0	Median	116890000	60248000	56637000	46	1782	43	84;85	209;210;211	210		2	9606
AADVENVPPVISTPHHYLISIYR	0	1	Unmodified	2590.3544	0.35437219	2447	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	13	0													1				18.049	18.049	4	2.4419E-10	12879	DP690-13	151.64	131.88			0.66796	0.80209	NaN	1	0	Median	89129000	52998000	36131000	47	2447	44	86	212;213;214;215	212		4	9606
AAEAGGAEEQYGFLTTPTK	1	0	Unmodified	1939.9163	0.91633654	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	10	0										1							17.117	17.117	2	1.8338E-05	12530	DP690-10	146.84	103.05			NaN	NaN	NaN	0	0	Median	17967000	17967000	0	48	763	45	87	216	216		1	9606
AAECNIVVTQPR	0	1	Unmodified	1356.682	0.68198369	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	10	0.816									1	1	1						13.298	13.298	2	0.00033692	7008	DP690-10	155	123.72			0.67287	0.82608	2.2893	2	0	Median	245560000	160150000	85415000	49	1137	46	88;89;90	217;218;219;220;221;222	218		6	9606
AAEDLFVNIR	0	1	Unmodified	1146.6033	0.60332266	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	3	0			1														18.283	18.283	2	0.0007336	12970	DP690-3	111.95	63.153			0.88506	0.99342	NaN	1	0	Median	33850000	15906000	17944000	50	2437	47	91	223;224	223		2	9606
AAEEEPSTSATVPMSK	1	0	Oxidation (M)	1649.7454	0.74543138	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	1	0	10	4.06				1					1			1			1		11.697	11.697	2	3.4107E-07	4251	DP690-12	171.62	121.51			0.56301	0.63545	33.356	2	0	Median	50299000	31388000	18911000	51	1200	48	92;93;94;95	225;226;227;228;229;230;231;232;233;234;235;236;237	225	1851	13	9606
AAEEEPSTSATVPMSK	1	0	Unmodified	1633.7505	0.75051676	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	12	0												1					13.054	13.054	2	3.4294E-12	6218	DP690-12	243.85	219.62			0.53583	0.63815	NaN	1	0	Median	41625000	26754000	14871000	52	1200	48	96	238;239;240;241	239		4	9606
AAEESASQIQSSAQR	0	1	Unmodified	1561.7332	0.73322721	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	0	8	3.56			1							1	1						11.331	11.331	2	2.6675E-31	4093	DP690-11	326.79	276.75			0.87788	1.087	11.569	3	0	Plateau	137300000	73067000	64238000	53	1234	49	97;98;99	242;243;244;245;246;247;248;249;250;251;252;253;254;255;256;257	250		16	9606
AAEFGEPTSEQTGTAAGK	1	0	Unmodified	1750.801	0.80097243	323	O95425	SVIL	Supervillin	yes	yes	0	0	0	10.5	0.5										1	1						12.942	12.942	2	6.9367E-12	6469	DP690-10	177.42	159.68			0.63255	0.78222	NaN	1	0	Median	71281000	43126000	28155000	54	323	50	100;101	258;259;260	259		3	9606
AAELEMELNEHSLVIDTLK	1	0	Oxidation (M)	2170.0827	0.082749937	2347	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	1	0	8	0								2									19.046	19.046	3	0.00084679	12587	DP690-8	106.31	80.165			NaN	NaN	NaN	0	0	Median	1658700	0	1658700	55	2347	51	102;103	261;262;263	262	2784	3	9606
AAELIANSLATAGDGLIELR	0	1	Unmodified	1997.0793	0.079319539	660	P35232	PHB	Prohibitin	yes	yes	0	0	0	15	0															1		22.267	22.267	2	3.743E-07	17601	DP690-15	157.68	103.16			NaN	NaN	NaN	0	0	Median	530750	0	530750	56	660	52	104	264;265	265		2	9606
AAEPQEQEFGK	1	0	Unmodified	1232.5673	0.56733108	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										2							11.829	11.829	2	0.0001982	4918	DP690-10	123.21	78.186			0.83684	1.0336	3.3959	2	0	Median	181500000	97158000	84345000	57	2065	53	105;106	266;267;268;269;270;271	270		6	9606
AAESLADPTEYENLFPGLK	1	0	Unmodified	2064.0052	0.0051515425	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	11	0											1						22.04	22.04	2	0.00070105	19398	DP690-11	93.649	74.919			0.78784	0.97371	NaN	1	0	Median	14975000	7788100	7186400	58	670	54	107	272	272		1	9606
AAESVSKPDVSEEAPGPSK	2	0	Unmodified	1883.9113	0.91125116	2043	Q9BY42	RTFDC1	Protein RTF2 homolog	yes	yes	0	0	1	12	3.46						1								3			11.594	11.594	2;3	1.7255E-17	4187	DP690-14	204.78	186.58			0.68236	0.73441	17.182	2	0	Median	81154000	48720000	32434000	59	2043	55	108;109;110;111	273;274;275;276;277;278;279;280;281;282;283	275		11	9606
AAETQTLNFGPEWLR	0	1	Acetyl (Protein N-term)	1773.8686	0.86859848	1512	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	1	0	0	10	0										1							23.57	23.57	2	1.8578E-10	21398	DP690-10	212.09	175.79			0.79988	0.9976	NaN	1	0	Median	7875900	4807400	3068500	60	1512	56	112	284;285;286;287	284		4	9606
AAEVLPSAR	0	1	Acetyl (Protein N-term)	954.51345	0.51344502	2074	Q9GZS1	POLR1E	DNA-directed RNA polymerase I subunit RPA49	yes	yes	1	0	0	13	0													1				16.942	16.942	1	0.047843	11374	DP690-13	50.04	29.52			0.73843	0.90902	NaN	1	0	Median	17322000	10231000	7090900	61	2074	57	113	288	288		0	9606
AAFGGSGGRGSSSGGGYSSGSSSYGSGGR	0	2	Unmodified	2500.0599	0.059934093	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	9.3	4.94	1			1	1		1	1	1					2	1	1	11.341	11.341	3	3.9571E-10	3748	DP690-5	129.54	116.1		+	NaN	NaN	NaN	0	0	Median	43974000	43974000	0	62	44	58	114;115;116;117;118;119;120;121;122;123	289;290;291;292;293;294;295;296;297;298;299;300;301;302;303;304;305;306;307;308	300		20	9606
AAFGLSEAGFNTACVTK	1	0	Unmodified	1742.8298	0.82977013	632	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	12	0												1					18.316	18.316	2	0.049483	13674	DP690-12	84.753	42.01			NaN	NaN	NaN	0	0	Median	9024400	0	9024400	63	632	59	124	309	309		1	9606
AAFQPEANPSHLTLNTALVESEDL	0	0	Unmodified	2566.2551	0.25511165	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	10	0										1							20.94	20.94	2	8.238E-08	18025	DP690-10	157.37	122.43			NaN	NaN	NaN	0	0	Median	0	0	0	64	1758	60	125	310	310		1	9606
AAGASDVVLYK	1	0	Unmodified	1092.5815	0.58152458	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	10	4.06				1					1			1			1		14.132	14.132	2	0.00036648	7367	DP690-4	117.81	92.003			0.87579	0.93151	10.461	3	0	Median	1886399999.9999998	977110000	909320000	65	2210	61	126;127;128;129	311;312;313;314;315;316;317;318;319;320;321;322;323;324;325	320		15	9606
AAGEPIKEGDNDYFTCITK	2	0	Unmodified	2127.9783	0.97828486	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	1	11	0											1						15.984	15.984	3	7.4981E-05	10852	DP690-11	111.73	98.091			0.90448	1.0508	NaN	1	0	Median	72614000	33057000	39558000	66	1941	62	130	326;327	327		2	9606
AAGFKDPLLASGTDGVGTK	2	0	Unmodified	1803.9367	0.93667805	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	3	0			3														15.921	15.921	2;3	1.2134E-10	9919	DP690-3	165.49	165.49			0.92014	0.99205	22.068	2	0	Median	109280000	58595000	50682000	67	559	63	131;132;133	328;329;330;331;332	331		5	9606
AAGFNVLR	0	1	Unmodified	846.47119	0.47118627	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	12	0												1					14.971	14.971	2	0.012478	9014	DP690-12	117.7	55.702			NaN	NaN	NaN	0	0	Median	51783000	51783000	0	68	1147	64	134	333;334;335	335		3	9606
AAGGDHGSPDSYR	0	1	Acetyl (Protein N-term)	1330.5538	0.55380628	627	P30566	ADSL	Adenylosuccinate lyase	yes	yes	1	0	0	4.5	0.5				1	1												10.995	10.995	2	0.00022217	3496	DP690-5	155.26	132.52			0.97878	1.0281	NaN	1	0	Median	23686000	11253000	12432000	69	627	65	135;136	336;337;338;339;340;341	340		6	9606
AAGGGGSCDPLAPAGVPCAFSPHSQAYFALASTDGHLR	0	1	Acetyl (Protein N-term)	3811.7471	0.7471265	1317	Q15061	WDR43	WD repeat-containing protein 43	yes	yes	1	0	0	11	0											1						20.564	20.564	3	3.2421E-18	17375	DP690-11	136.48	111.24			NaN	NaN	NaN	0	0	Median	23390000	23390000	0	70	1317	66	137	342;343	342		2	9606
AAGLATMISTMRPDIDNMDEYVR	0	2	3 Oxidation (M)	2617.1822	0.18222276	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	3	1	10	0										1							16.058	16.058	3	0.027662	11083	DP690-10	46.971	34.524			0.61198	0.7289	NaN	1	0	Median	55974000	38466000	17508000	71	263	67	138	344	344	264;265;266	1	9606
AAGSGELGVTMK	1	0	Oxidation (M)	1135.5543	0.55432356	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	6	4		1								1							11.189	11.189	2	0.012543	3977	DP690-10	79.07	51.741			0.83053	0.91002	5.2302	2	0	Median	220220000	124310000	95906000	72	250	68	139;140	345;346;347	345	236	3	9606
AAGSPHLTLEFCNYPSSMR	0	1	Oxidation (M)	2152.967	0.96700867	1863	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	1	0	12	0												1					16.426	16.426	3	0.0010437	11019	DP690-12	77.031	61.686			0.6674	0.79236	NaN	1	0	Median	54177000	30860000	23317000	73	1863	69	141	348;349	348	2423	2	9606
AAGTAAALAFLSQESR	0	1	Acetyl (Protein N-term)	1604.8158	0.81583463	267	O75607	NPM3	Nucleoplasmin-3	yes	yes	1	0	0	12	4								1								1	24.409	24.409	2	5.6266E-22	19251	DP690-16	240.65	192.68			0.96829	1.1015	8.5914	2	0	Median	39137000	20016000	19121000	74	267	70	142;143	350;351;352;353;354;355;356	353		7	9606
AAGTAAALAFLSQESRTR	0	2	Acetyl (Protein N-term)	1861.9646	0.96462413	267	O75607	NPM3	Nucleoplasmin-3	yes	yes	1	0	1	16	0																1	22.058	22.058	2	0.011676	16939	DP690-16	92.866	49.364			NaN	NaN	NaN	0	0	Median	572650	0	572650	75	267	71	144	357	357		1	9606
AAGTGFTVNVAWNGPR	0	1	Unmodified	1616.8059	0.80593865	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	3	0			1														18.213	18.213	2	1.0369999999999999E-22	12894	DP690-3	261.35	235.31			0.72283	0.816	NaN	1	0	Median	30353000	15699000	14654000	76	2316	72	145	358;359	359		2	9606
AAGTLYTYPENWR	0	1	Acetyl (Protein N-term)	1582.7416	0.74160705	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	13	0													1				21.085	21.085	2	4.7646E-06	16799	DP690-13	194.12	106.55			NaN	NaN	NaN	0	0	Median	0	0	0	77	598	73	146	360	360		1	9606
AAGVEAAAEVAATEIK	1	0	Acetyl (Protein N-term)	1541.7937	0.7937022	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	11.5	0.5											1	1					23.612	23.612	2	3.0938E-18	21227	DP690-11	229.56	182.6			0.72576	0.88541	NaN	1	0	Median	28473000	16600000	11873000	78	849	74	147;148	361;362;363;364;365;366	363		6	9606
AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPK	2	0	Acetyl (Protein N-term)	3390.6249	0.6249289	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	1	11	0											1						24.045	24.045	3	0.0021886	21717	DP690-11	57.076	36.649			NaN	NaN	NaN	0	0	Median	1522700	1522700	0	79	849	75	149	367	367		1	9606
AAHSEGNTTAGLDMR	0	1	Unmodified	1529.6893	0.68925391	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	4	0				2													11.029	11.029	2;3	0.0012596	3503	DP690-4	82.578	51.43			1.4898	1.703	NaN	1	0	Median	22037000	8711600	13326000	80	1044	76	150;151	368;369;370;371;372	369		5	9606
AAIDWFDGKEFSGNPIK	2	0	Unmodified	1893.9261	0.92611336	672	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	12	0												1					19.509	19.509	3	0.0059589	15314	DP690-12	66.965	66.965			0.73748	0.8642	NaN	1	0	Median	23358000	10921000	12437000	81	672	77	152	373	373		1	9606
AAIEAFNK	1	0	Unmodified	862.45487	0.45486751	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	12	0												1					12.81	12.81	2	0.070812	5927	DP690-12	89.369	22.376			NaN	NaN	NaN	0	0	Median	57241000	57241000	0	82	2342	78	153	374	374		1	9606
AAILPTSIFLTNK	1	0	Unmodified	1387.8075	0.80750177	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	8	4				1								1					20.562	20.562	2	4.2784E-05	15295	DP690-4	158.47	141			1.4877	1.6969	78.999	2	0	Median	53791000	16486000	37305000	83	111	79	154;155	375;376;377;378;379;380	378		6	9606
AAILPTSIFLTNKK	2	0	Unmodified	1515.9025	0.90246479	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	1	4	0				1													18.102	18.102	3	2.0892E-05	12494	DP690-4	143.31	122.5			2.789	2.8957	NaN	1	0	Median	26623000	7229200	19394000	84	111	80	156	381;382	382		2	9606
AALAHPFFQDVTKPVPHLR	1	1	Unmodified	2143.1691	0.16907802	580	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	1	14	0														1			15.423	15.423	5	0.0029348	9516	DP690-14	66.939	58.651			0.53704	0.67194	NaN	1	0	Median	41679000	28390000	13289000	85	580	81	157	383;384	384		2	9606
AALAHSEEVTASQVAATK	1	0	Unmodified	1782.9112	0.91119158	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.1	0.833									2	2	3						12.966	12.966	2;3	6.8975E-31	5809	DP690-9	232.78	121.12			0.83868	0.96739	7.5087	5	0	Median	1397700000	794370000	603290000	86	1319	82	158;159;160;161;162;163;164	385;386;387;388;389;390;391;392;393;394;395;396;397;398;399;400;401	397		17	9606
AALAPELALEIPSGSQADIPLPK	1	0	Unmodified	2300.2628	0.26276321	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	10	0										1							21.763	21.763	2	0.00035817	19149	DP690-10	136.14	132.07			0.61805	0.75249	NaN	1	0	Median	20313000	12757000	7556100	87	1602	83	165	402;403;404	402		3	9606
AALDSLSLFTSLGLSEQK	1	0	Acetyl (Protein N-term)	1921.0044	0.004423261	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	1	0	0	10.3	0.943									1		2						27.675	27.675	2	9.7037E-31	25574	DP690-11	250.69	215.91			0.85956	1.0299	NaN	1	0	Median	4203400	2050200	2153200	88	770	84	166;167;168	405;406;407;408;409;410;411;412	409		8	9606
AALEAQNALHNMK	1	0	Oxidation (M)	1425.7034	0.70344741	1795	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	1	0	12	0												1					10.749	10.749	3	0.026196	3221	DP690-12	56.936	36.84			1.0345	1.2325	NaN	1	0	Median	46459000	22451000	24008000	89	1795	85	169	413	413	2367	1	9606
AALEEVYPDLTPEETRR	0	2	Unmodified	1987.9851	0.9850848	2088	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	1	11	0											1						16.573	16.573	3	2.0657E-05	11708	DP690-11	123.29	94.334			0.78392	0.96635	NaN	1	0	Median	94965000	53290000	41675000	90	2088	86	170	414;415;416	414		3	9606
AALETDENLLLCAPTGAGK	1	0	Unmodified	1942.967	0.9669919	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	9.5	0.5									1	1							18.89	18.89	2	1.7874E-31	15136	DP690-10	258.42	258.42			0.77961	0.96215	NaN	1	0	Median	111990000	61673000	50314000	91	269	87	171;172	417;418;419;420;421;422	419		6	9606
AALGEPVRLER	0	2	Acetyl (Protein N-term)	1251.6935	0.69353465	2221	Q9NUP9	LIN7C	Protein lin-7 homolog C	yes	yes	1	0	1	15	0															1		16.51	16.51	2	0.060309	10718	DP690-15	78.113	7.5879			NaN	NaN	NaN	0	0	Median	43302000	0	43302000	92	2221	88	173	423	423		1	9606
AALGHLAGEAAAAPGPGTPCASR	0	1	Acetyl (Protein N-term)	2144.0433	0.043285158	2132	Q9H7E9	C8orf33	UPF0488 protein C8orf33	yes	yes	1	0	0	15	0															1		17.541	17.541	2	1.0505999999999999E-19	12091	DP690-15	189.37	189.37			0.64833	0.74868	NaN	1	0	Median	6970700	4220900	2749800	93	2132	89	174	424;425;426;427;428	425		5	9606
AALGPLVTGLYDVQAFK	1	0	Unmodified	1761.9665	0.96652161	465	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	5	0					1												22.287	22.287	2	0.00025237	17115	DP690-5	112.43	78.544			1.1504	1.1524	NaN	1	0	Median	10696000	4949800	5746100	94	465	90	175	429;430;431;432	431		4	9606
AALLELWELRR	0	2	Unmodified	1368.7878	0.78776939	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							19.347	19.347	3	0.057687	15779	DP690-10	80.688	80.688			0.63181	0.75252	NaN	1	0	Median	39955000	22488000	17467000	95	1236	91	176	433	433		0	9606
AALLETLSLLLAK	1	0	Unmodified	1354.8436	0.84355293	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	9.33	0.471									2	1							25.251	25.251	2	0.00015213	23384	DP690-10	159.34	159.34			0.97413	1.1844	24.602	3	0	Plateau	25518000	13025000	12493000	96	1782	92	177;178;179	434;435;436;437;438;439;440;441;442	434		9	9606
AALLNQHYQVNFK	1	0	Unmodified	1544.81	0.80996139	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	4.67	3.77		2								1							15.427	15.427	2;3	7.3338E-05	8249	DP690-2	130.01	113.91			0.88045	1.0409	0.71155	3	0	Plateau	226960000	120570000	106390000	97	408	93	180;181;182	443;444;445;446;447;448;449;450;451;452;453;454;455	451		13	9606
AALMESQGQQQEER	0	1	Oxidation (M)	1619.7209	0.72094797	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	1	0	10	0										1							10.481	10.481	2	5.1117E-15	2947	DP690-10	233.84	189.41			0.82558	1.0195	NaN	1	0	Median	123460000	67306000	56149000	98	1301	94	183	456;457;458	456	1992	3	9606
AALMESQGQQQEER	0	1	Unmodified	1603.726	0.72603334	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							11.55	11.55	2	4.7026E-16	4434	DP690-10	265.01	206.77			0.8787	1.099	NaN	1	0	Median	34662000	16579000	18084000	99	1301	94	184	459;460;461;462;463	461		5	9606
AALNGADIYAGCCTLK	1	0	Unmodified	1696.7913	0.79127614	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												1					16.426	16.426	2	1.8676E-07	11020	DP690-12	172.33	147.48			0.83549	0.9928	NaN	1	0	Median	75587000	43349000	32238000	100	1750	95	185	464;465;466;467	464		4	9606
AALQEELQLCK	1	0	Unmodified	1301.6649	0.66493664	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															16.297	16.297	2	5.5965E-05	9308	DP690-2	178.55	129.01			0.7488	0.75963	NaN	1	0	Median	38446000	22221000	16225000	101	789	96	186	468;469;470;471	470		4	9606
AALQELLSK	1	0	Unmodified	971.56515	0.56514624	995	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	12	4								1								1	17.03	17.03	2	0.0022335	11129	DP690-16	112.41	88.208			1.0198	1.087	16.031	2	0	Median	490720000	249930000	240780000	102	995	97	187;188	472;473;474;475;476	473		5	9606
AALQLVVDPGDPR	0	1	Unmodified	1349.7303	0.73031409	350	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	0	0	12	0												1					17.494	17.494	2	0.0051779	12577	DP690-12	83.862	52.265			1.0345	1.2317	NaN	1	0	Median	33996000	16153000	17843000	103	350	98	189	477;478;479	478		3	9606
AALQMQFNAAER	0	1	Oxidation (M)	1364.6507	0.65068356	1758	Q8WX93	PALLD	Palladin	yes	yes	0	1	0	11	0											3						13.657	13.657	2	0.00089981	7372	DP690-11	110.53	68.343			0.79844	0.94449	NaN	1	0	Median	241040000	136990000	104050000	104	1758	99	190;191;192	480;481;482;483	480	2327	4	9606
AALQMQFNAAER	0	1	Unmodified	1348.6558	0.65576893	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	11	0											4						15.767	15.767	2	1.2137E-05	10600	DP690-11	196.52	131.24			NaN	NaN	NaN	0	0	Median	67157000	67157000	0	105	1758	99	193;194;195;196	484;485;486;487	485		4	9606
AALRPLVKPK	2	1	Acetyl (Protein N-term)	1133.7285	0.72846359	1005	P62910	RPL32	60S ribosomal protein L32	yes	yes	1	0	2	16	0																1	10.811	10.811	3	0.005022	3368	DP690-16	74.376	74.376			1.0867	1.2005	NaN	1	0	Median	1614900	640050	974870	106	1005	100	197	488;489;490	488		3	9606
AALSALESFLK	1	0	Unmodified	1148.6441	0.64412484	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	8	3.54		1							1	1	1						21.449	21.449	2	2.0342E-06	18650	DP690-10	218.73	160.5			0.89378	1.0308	4.416	4	0	Median	489170000	259850000	229320000	107	1046	101	198;199;200;201	491;492;493;494;495;496;497;498;499;500;501;502;503;504	491		14	9606
AALSEEELEKK	2	0	Unmodified	1245.6452	0.64524705	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	6	4		1								1							11.889	11.889	2	0.00062806	4965	DP690-10	120.31	91.156			1.172	1.3527	11.971	2	0	Median	59341000	30116000	29225000	108	1111	102	202;203	505;506;507;508	505		4	9606
AALSSQQQQQLALLLQQFQTLK	1	0	Unmodified	2484.37	0.37002225	1512	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	10	0										1							24.076	24.076	2	2.9506E-48	21839	DP690-10	287.43	287.43			0.83079	1.0072	NaN	1	0	Median	13477000	7305300	6172000	109	1512	103	204	509;510;511;512;513;514;515	510		7	9606
AALTAEHFAALQSLLK	1	0	Acetyl (Protein N-term)	1724.9461	0.94612052	2282	Q9P000	COMMD9	COMM domain-containing protein 9	yes	yes	1	0	0	16	0																1	23.053	23.053	2	4.7226E-06	17997	DP690-16	140.82	86.048			0.75006	0.87345	NaN	1	0	Median	2941600	1642500	1299100	110	2282	104	205	516;517;518;519	518		4	9606
AALVDLEPGTMDSVR	0	1	Oxidation (M)	1588.7767	0.77667193	2010	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	1	0	9	4					1								1				16.778	16.778	2	2.5755E-05	10279	DP690-5	133.42	101.36			0.97018	1.0861	0.10812	2	0	Median	150850000	80369000	70482000	111	2010	105	206;207	520;521;522;523;524;525	525	2542	6	9606
AALVLEDGSVLR	0	1	Acetyl (Protein N-term)	1283.7085	0.70851601	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	1	0	0	2	0		1															23.386	23.386	2	0.071895	16972	DP690-2	60.398	16.886			1.3618	1.396	NaN	1	0	Median	3494200	1511200	1983000	112	602	106	208	526;527	527		2	9606
AAMDNSEIAGEKK	2	0	Unmodified	1362.6449	0.64492948	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	1	11	0											1						10.468	10.468	3	1.834E-05	2776	DP690-11	132.79	104.17			0.71785	0.80474	NaN	1	0	Median	206620000	115540000	91082000	113	1375	107	209	528;529;530	528		3	9606
AAMEPIVISAK	1	0	Oxidation (M)	1144.6162	0.61619553	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	1	0	2	0		1															13.861	13.861	2	0.059833	6345	DP690-2	66.962	37.489			1.3547	1.3614	NaN	1	0	Median	7217800	2559300	4658500	114	2482	108	210	531	531		1	9606
AANAAENDFSVSQAEMSSR	0	1	Oxidation (M)	1999.8541	0.85414698	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	1	0	8.5	3.28			1						1		2						14.589	14.589	2	3.8077999999999995E-50	8771	DP690-11	249.82	210.86			0.73722	0.85944	16.541	2	0	Median	89451000	34444000	55007000	115	1687	109	211;212;213;214	532;533;534;535;536;537;538;539	534	2287	8	9606
AANAAENDFSVSQAEMSSR	0	1	Unmodified	1983.8592	0.85923236	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	11	0											2						15.834	15.834	2	1.0359E-136	10661	DP690-11	331.7	275.98			NaN	NaN	NaN	0	0	Median	28325000	28325000	0	116	1687	109	215;216	540;541;542	540		3	9606
AANATTNPSQLLPLELVDK	1	0	Acetyl (Protein N-term)	2036.079	0.078985188	2492	Q9Y4Y9	LSM5	U6 snRNA-associated Sm-like protein LSm5	yes	yes	1	0	0	16	0																1	23.807	23.807	2	0.00099554	18761	DP690-16	131.35	92.718			NaN	NaN	NaN	0	0	Median	0	0	0	117	2492	110	217	543	543		1	9606
AANILVGENLVCK	1	0	Unmodified	1399.7493	0.74933497	412;477	P07947;P12931	YES1;SRC	Tyrosine-protein kinase Yes;Proto-oncogene tyrosine-protein kinase Src	no	no	0	0	0	12	0												1					17.359	17.359	2	7.2795E-05	12313	DP690-12	133.91	109.68			0.70897	0.79456	NaN	1	0	Median	186450000	118910000	67542000	118	412;477	111	218	544;545	545		2	9606
AANLLLGYK	1	0	Unmodified	961.55967	0.55966693	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	13	0.816												1	1	1			16.49	16.49	2	0.0020334	11149	DP690-12	114.6	75.796			1.0615	1.2635	29.932	2	0	Median	181370000	104620000	76744000	119	1589	112	219;220;221	546;547;548;549;550;551;552;553;554	549		9	9606
AANVLITR	0	1	Unmodified	856.51305	0.51305109	824	P50750	CDK9	Cyclin-dependent kinase 9	yes	yes	0	0	0	14	0														1			12.516	12.516	2	0.059031	5423	DP690-14	95.815	31.608			NaN	NaN	NaN	0	0	Median	0	0	0	120	824	113	222	555	555		1	9606
AANVLLSEHGEVK	1	0	Unmodified	1365.7252	0.72522871	2518	Q9Y6E0	STK24	Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	yes	yes	0	0	0	13	0													1				12.719	12.719	3	0.030913	5614	DP690-13	53.947	53.947			1.0961	1.2684	NaN	1	0	Median	48176000	24199000	23976000	121	2518	114	223	556	556		1	9606
AAPAPTASSTININTSTSK	1	0	Unmodified	1830.9323	0.93232095	1590	Q86Y37	CACUL1	CDK2-associated and cullin domain-containing protein 1	yes	yes	0	0	0	14	0														2			13.95	13.95	2	0.011255	7483	DP690-14	119.87	83.867			NaN	NaN	NaN	0	0	Median	0	0	0	122	1590	115	224;225	557;558	558		2	9606
AAPDPVLEAGPVAHGPLPVPLVLDNGSFQVR	0	1	Unmodified	3131.6768	0.67676896	2146	Q9H9F9	ACTR5	Actin-related protein 5	yes	yes	0	0	0	12	0												1					21.643	21.643	3	6.5305E-05	17926	DP690-12	59.555	48.3			0.52066	0.63924	NaN	1	0	Median	3208600	1839200	1369400	123	2146	116	226	559;560	560		2	9606
AAPEASGTPSSDAVSR	0	1	Unmodified	1501.7009	0.70086445	633	P31146	CORO1A	Coronin-1A	yes	yes	0	0	0	12.5	0.5												1	1				10.806	10.806	2	8.8889E-13	3202	DP690-13	210.44	164.04			1.1246	1.3609	44.956	2	0	Median	61201000	29713000	31488000	124	633	117	227;228	561;562;563;564;565;566;567;568;569	567		9	9606
AAPEEHDSPTEASQPIVEEEETK	1	0	Acetyl (Protein N-term)	2564.1402	0.14020105	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	1	0	0	13	0													1				15.516	15.516	2	1.8783E-48	9431	DP690-13	284.24	268.6			0.6268	0.71247	NaN	1	0	Median	119100000	70747000	48352000	125	2090	118	229	570;571;572;573	573		4	9606
AAPEERDLTQEQTEK	1	1	Acetyl (Protein N-term)	1785.8381	0.83808621	1834	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	1	0	1	13	0													1				13.746	13.746	2	0.0001155	6988	DP690-13	170.18	91.838			NaN	NaN	NaN	0	0	Median	0	0	0	126	1834	119	230	574	574		1	9606
AAPEPLRPR	0	2	Acetyl (Protein N-term)	1047.5825	0.58252764	1339	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	yes	yes	1	0	1	14	0														1			13.049	13.049	2	0.0014707	6145	DP690-14	95.741	64.438			0.52818	0.6207	NaN	1	0	Median	76830000	46673000	30157000	127	1339	120	231	575;576	576		2	9606
AAPFSLEYR	0	1	Unmodified	1052.5291	0.52909508	1320	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	6	0						1											16.708	16.708	2	0.011843	10168	DP690-6	87.696	41.681			0.54384	0.61374	NaN	1	0	Median	20318000	12456000	7861300	128	1320	121	232	577;578	578		2	9606
AAPGAEFAPNKR	1	1	Unmodified	1227.636	0.63601977	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	11	1.41									1			2					10.688	10.688	2;3	1.8798E-05	3055	DP690-12	163.84	127.52			0.59875	0.60178	25.875	3	0	Median	887220000	534600000	352620000	129	1322	122	233;234;235	579;580;581;582;583;584;585;586;587	579		9	9606
AAPGPALCLFDVDGTLTAPR	0	1	Acetyl (Protein N-term)	2083.0408	0.040825542	151	O15305	PMM2	Phosphomannomutase 2	yes	yes	1	0	0	7	0							1										24.851	24.851	2	0.0010378	20195	DP690-7	118.76	86.324			NaN	NaN	NaN	0	0	Median	0	0	0	130	151	123	236	588	588		1	9606
AAPKEEAEAMNNLKPPQAK	3	0	Oxidation (M)	2052.031	0.030989138	2018	Q9BVC5	C2orf49	Ashwin	yes	yes	0	1	2	15	0															1		11.144	11.144	4	0.0061361	3781	DP690-15	58.658	43.927			0.53179	0.5793	NaN	1	0	Median	23260000	13781000	9479400	131	2018	124	237	589;590	590	2552	2	9606
AAPPEPGEPEERK	1	1	Acetyl (Protein N-term)	1447.6943	0.69432251	1425	Q5RI15	COX20	Cytochrome c oxidase protein 20 homolog	yes	yes	1	0	1	16	0																1	12.004	12.004	2	0.0028619	4693	DP690-16	80.916	33.21			NaN	NaN	NaN	0	0	Median	4837100	4837100	0	132	1425	125	238	591;592	591		2	9606
AAPQSPSVPK	1	0	Unmodified	980.5291	0.52909508	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10	0										1							10.743	10.743	2	0.0014145	3310	DP690-10	106.04	72.526			0.58033	0.64844	NaN	1	0	Median	563620000	357330000	206290000	133	272	126	239	593;594;595;596;597	594		5	9606
AAPSDGFKPR	1	1	Acetyl (Protein N-term)	1086.5458	0.54580778	1801	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	1	0	1	15	0															1		12.745	12.745	2	3.5778E-05	5691	DP690-15	136.27	116.13			0.92118	1.0499	NaN	1	0	Median	43057000	27062000	15995000	134	1801	127	240	598;599;600;601	598		4	9606
AAPTAASDQPDSAATTEK	1	0	Unmodified	1730.7959	0.79588705	1985	Q9BRP8	WIBG	Partner of Y14 and mago	yes	yes	0	0	0	15	0															3		10.574	10.574	2	4.5494E-31	2994	DP690-15	255.24	229.33			0.71101	0.83826	NaN	1	0	Median	10926000	5643700	5282700	135	1985	128	241;242;243	602;603;604;605	602		4	9606
AAPVDLELKK	2	0	Acetyl (Protein N-term)	1124.6441	0.64412484	230	O60925	PFDN1	Prefoldin subunit 1	yes	yes	1	0	1	12	4								1								1	16.045	16.045	2	0.040245	9238	DP690-8	66.299	23.903			0.73281	0.83647	NaN	1	0	Median	19596000	8568400	11027000	136	230	129	244;245	606;607	607		2	9606
AAQAPSSFQLLYDLK	1	0	Unmodified	1650.8617	0.86172219	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7.67	3.4			1						1		1						20.655	20.655	2	1.9322E-05	17458	DP690-11	208.17	193.89			0.90153	0.94827	21.812	3	0	Median	592630000	313920000	278710000	137	470	130	246;247;248	608;609;610;611;612;613;614;615;616	611		9	9606
AAQCGHPVLCVQPHHIGVAVK	1	0	Unmodified	2277.1623	0.16229486	423	P08651	NFIC	Nuclear factor 1 C-type	yes	yes	0	0	0	13	0													1				12.896	12.896	5	0.00033286	5812	DP690-13	83.894	54.318			0.66696	0.75567	NaN	1	0	Median	129480000	77994000	51487000	138	423	131	249	617;618;619	617		3	9606
AAQEQVLNASR	0	1	Unmodified	1185.6102	0.61019895	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	11	0											1						11.692	11.692	2	0.00028413	4520	DP690-11	120.45	86.902			1.0332	1.2375	NaN	1	0	Median	55342000	25913000	29429000	139	1941	132	250	620;621;622;623;624	622		5	9606
AAQGEPQVQFK	1	0	Acetyl (Protein N-term)	1243.6197	0.619701	991	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	1	0	0	9.67	3.77							2								1		16.138	16.138	2	0.00012363	10254	DP690-15	129.42	82.965			0.7848	0.92615	NaN	1	0	Median	33574000	11023000	22550000	140	991	133	251;252;253	625;626;627;628;629	626		5	9606
AAQLAREIESSPQYR	0	2	Unmodified	1717.8747	0.87474649	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	1	13	0													1				14.97	14.97	3	0.01852	8584	DP690-13	58.116	1.8299			0.93652	1.0753	NaN	1	0	Median	4316700000	2228100000	2088499999.9999998	141	1755	134	254	630;631	631		2	9606
AAQLIGTCSQNVAAIQEQVLGLGALR	0	1	Unmodified	2680.433	0.43303321	2274	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	6	0						1											22.677	22.677	2	1.6319E-06	17032	DP690-6	130.12	116.95			0.98004	1.0743	NaN	1	0	Median	1502000	815700	686260	142	2274	135	255	632;633;634;635	633		4	9606
AAQLVDKDSTFLSTLEHHLSR	1	1	Unmodified	2367.2183	0.21827264	1812	Q969V3	NCLN	Nicalin	yes	yes	0	0	1	13	0													1				18.313	18.313	4	0.0021854	13254	DP690-13	66.448	49.524			0.76855	0.93916	NaN	1	0	Median	29892000	14538000	15354000	143	1812	136	256	636	636		1	9606
AAQVAQDEEIAR	0	1	Unmodified	1299.6419	0.64189301	1603	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	yes	yes	0	0	0	14	0														1			11.838	11.838	2	0.00041405	4615	DP690-14	160.36	132.59			1.1127	1.3448	NaN	1	0	Median	56210000	28778000	27432000	144	1603	137	257	637;638	637		2	9606
AASAATAAPTATPAAQESGTIPK	1	0	Unmodified	2082.0593	0.059312378	61	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	12	0												1					13.548	13.548	2	1.4096999999999998E-23	6903	DP690-12	196.37	156.81			0.71414	0.85438	NaN	1	0	Median	33075000	19315000	13760000	145	61	138	258	639;640;641;642	641		4	9606
AASADSTTEGTPADGFTVLSTK	1	0	Unmodified	2126.0015	0.0015227276	249	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	14	0														1			17.344	17.344	2	3.4615999999999996E-19	12097	DP690-14	184.87	148.45			0.83751	1.0175	NaN	1	0	Median	57022000	28482000	28540000	146	249	139	259	643;644;645	643		3	9606
AASDGQYENQSPEATSPR	0	1	Unmodified	1906.8293	0.82931244	2162	Q9HBL0	TNS1	Tensin-1	yes	yes	0	0	0	10	0										2							11.757	11.757	2	7.9409E-07	4757	DP690-10	164.92	129.91			NaN	NaN	NaN	0	0	Median	0	0	0	147	2162	140	260;261	646;647	646		2	9606
AASDIAMTELPPTHPIR	0	1	Oxidation (M)	1834.9247	0.92473315	970	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	1	0	15	0															1		14.303	14.303	3	0.036938	7871	DP690-15	71.286	46.331			NaN	NaN	NaN	0	0	Median	17632000	17632000	0	148	970	141	262	648;649	649	1487	2	9606
AASLEAVSYAIDTLK	1	0	Unmodified	1550.8192	0.81918867	347	O96007	MOCS2	Molybdopterin synthase catalytic subunit	yes	yes	0	0	0	7.5	0.5							1	1									21.126	21.126	2	1.252E-05	15843	DP690-7	152.14	123.56			0.86497	0.95868	12.259	2	0	Median	31371000	17771000	13600000	149	347	142	263;264	650;651;652;653	650		4	9606
AASLEYDYETIR	0	1	Unmodified	1429.6725	0.67252444	1900	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	9.5	0.5									1	1							16.735	16.735	2	3.7404E-10	12030	DP690-10	221.68	176.54			0.8255	0.99113	6.8951	2	0	Median	248960000	146750000	102220000	150	1900	143	265;266	654;655;656;657;658;659;660;661	654		8	9606
AASPAKPSSLDLVPNLPK	2	0	Unmodified	1804.0094	0.0094490594	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	1	11	0											1						16.765	16.765	3	0.00014053	11935	DP690-11	106.87	96.397			0.53494	0.609	NaN	1	0	Median	131530000	86114000	45412000	151	1653	144	267	662;663;664	662		3	9606
AASQPTSLAPEK	1	0	Unmodified	1198.6194	0.61936665	1900	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	9	0									1								11.022	11.022	2	0.0062604	3407	DP690-9	82.417	16.146			0.62761	0.75658	NaN	1	0	Median	37162000	22255000	14907000	152	1900	145	268	665;666;667;668	665		4	9606
AASQQEIEQSIETLNMLMLDLEPASAAAPLHK	1	0	2 Oxidation (M)	3480.7116	0.71163542	2162	Q9HBL0	TNS1	Tensin-1	yes	yes	0	2	0	10	0										1							23.242	23.242	3	9.9598E-06	21077	DP690-10	85.291	59.844			NaN	NaN	NaN	0	0	Median	5495300	5495300	0	153	2162	146	269	669	669	2648;2649	1	9606
AASQSTQVPTITEGVAAALLLLK	1	0	Unmodified	2281.2893	0.28931231	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	9.75	0.433									1	3							25.845	25.845	2	4.5879000000000005E-24	24060	DP690-10	207.85	207.85			0.78504	0.9282	4.7067	3	0	Median	20514000	12067000	8446500	154	1782	147	270;271;272;273	670;671;672;673;674;675	673		6	9606
AASVHTVGEDTEETPHR	0	1	Unmodified	1834.8446	0.84456858	1943	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	9	0									1								10.378	10.378	4	0.019547	2630	DP690-9	52.172	35.233			0.73879	0.9232	NaN	1	0	Median	10963000	6074100	4888800	155	1943	148	274	676;677	676		2	9606
AATASAGAGGIDGKPR	1	1	Acetyl (Protein N-term)	1440.7321	0.732105	1101	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	1	0	1	15	0															2		12.24	12.24	2	2.7455E-13	5011	DP690-15	209.67	145.02			0.76833	0.86731	14.093	2	0	Median	151770000	85042000	66730000	156	1101	149	275;276	678;679;680;681;682;683	682		6	9606
AATENIPVVR	0	1	Unmodified	1068.5928	0.59275797	1484	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	12	0												1					13.656	13.656	2	0.06245	7095	DP690-12	60.118	29.554			0.83424	0.9899	NaN	1	0	Median	50480000	26856000	23624000	157	1484	150	277	684;685	684		2	9606
AATGANAEKAESHNDCPVR	1	1	Acetyl (Protein N-term)	2038.9127	0.91266492	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	1	0	1	8.25	3.34						2	1							1			10.875	10.875	3	7.8247E-23	3346	DP690-6	216	185.36			0.81438	1.0388	11.18	4	0	Linear	135680000	71103000	64577000	158	1372	151	278;279;280;281	686;687;688;689;690;691;692;693;694;695	691		10	9606
AATGEEVSAEDLGGADLHCR	0	1	Unmodified	2056.912	0.91199621	2167	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	6.67	3.77				2								1					14.706	14.706	3	0.00023304	8191	DP690-4	108.96	81.453			NaN	NaN	NaN	0	0	Median	33387000	25819000	7568700	159	2167	152	282;283;284	696;697;698;699;700;701	699		6	9606
AATNHVTPEEKEQVYR	1	1	Unmodified	1870.9173	0.91733959	2308	Q9P2W1	PSMC3IP	Homologous-pairing protein 2 homolog	yes	yes	0	0	1	15	0															2		10.407	10.407	4	1.5619E-07	2746	DP690-15	158.31	119.91			0.61493	0.71704	20.323	2	0	Median	42595000	24916000	17679000	160	2308	153	285;286	702;703	702		1	9606
AATSPALFNR	0	1	Unmodified	1046.5509	0.55089316	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									2								14.061	14.061	2	0.0099659	7243	DP690-9	116.25	73.381			NaN	NaN	NaN	0	0	Median	0	0	0	161	1264	154	287;288	704;705	704		2	9606
AATTGHVIDIYACALDQTGLLEMK	1	0	Oxidation (M)	2606.272	0.27202404	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	1	0	11	0											1						20.682	20.682	3	0.00090566	17481	DP690-11	72.227	72.227			1.101	1.3391	NaN	1	0	Median	37579000	22348000	15231000	162	1332	155	289	706	706	2077	1	9606
AAVAEQPPRPCPVGRPPGASPSCGGR	0	3	Unmodified	2627.2809	0.28090644	1529	Q7L2K0	C16orf59	Uncharacterized protein C16orf59	yes	yes	0	0	2	13	0													1				11.753	11.753	4	0.049137	4361	DP690-13	42.612	31.929			0.43276	0.45067	NaN	1	0	Median	23983000	16402000	7581300	163	1529	156	290	707	707		1	9606
AAVATFLQSVQVPEFTPK	1	0	Unmodified	1932.0357	0.03566381	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														21.727	21.727	2	9.127599999999999E-43	17185	DP690-3	310.34	310.34			0.81895	0.8703	NaN	1	0	Median	29957000	17128000	12829000	164	561	157	291	708;709;710;711;712;713	711		6	9606
AAVDLEK	1	0	Acetyl (Protein N-term)	786.41233	0.41233399	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	1	0	0	3	0			1														15.531	15.531	1	0.031283	9576	DP690-3	67.981	7.2209			1.0802	1.1593	NaN	1	0	Median	20457000	9962500	10494000	165	518	158	292	714	714		0	9606
AAVEDSGTTVETIK	1	0	Unmodified	1419.7093	0.70930387	1448	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	11	0											2						13.306	13.306	2	6.0038E-09	6940	DP690-11	205.52	146.37			NaN	NaN	NaN	0	0	Median	35238000	0	35238000	166	1448	159	293;294	715;716	716		2	9606
AAVEEGIVLGGGCALLR	0	1	Unmodified	1683.8978	0.89779012	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	4	0				1													19.45	19.45	2	0.00030404	14200	DP690-4	109.72	66.219			1.2945	1.5071	NaN	1	0	Median	9975700	4304500	5671200	167	461	160	295	717	717		1	9606
AAVENLPTFLVELSR	0	1	Unmodified	1657.9039	0.90392136	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	8.33	3.77			1								2						23.196	23.196	2	1.5628E-15	18728	DP690-3	240.8	214.01			0.78235	0.94005	10.226	3	0	Plateau	114110000	61721000	52386000	168	1300	161	296;297;298	718;719;720;721;722;723;724;725;726;727;728;729;730	729		13	9606
AAVESLGFILFR	0	1	Unmodified	1321.7394	0.73942221	1935	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	3	0			1														22.607	22.607	2	3.5197E-05	18189	DP690-3	127.4	76.052			1.2247	1.3707	NaN	1	0	Median	7192500	2748300	4444200	169	1935	162	299	731;732;733	732		3	9606
AAVGQESPGGLEAGNAK	1	0	Unmodified	1554.7638	0.76379906	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10	0										1							12.392	12.392	2	1.7854E-12	5681	DP690-10	199.4	178.57			0.7899	0.97528	NaN	1	0	Median	125570000	63857000	61715000	170	1377	163	300	734;735;736	735		3	9606
AAVIGDVIR	0	1	Unmodified	912.53927	0.53926584	2195	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	11	0											1						15.407	15.407	2	0.034524	9964	DP690-11	93.195	49.079			NaN	NaN	NaN	0	0	Median	51859000	51859000	0	171	2195	164	301	737	737		1	9606
AAVLKPVLLGLR	1	1	Acetyl (Protein N-term)	1290.8387	0.83874232	1984	Q9BRP1	PDCD2L	Programmed cell death protein 2-like	yes	yes	1	0	1	9	3.69						3							1	1			22.039	22.039	2	4.2095E-05	17997	DP690-13	138.06	132.1			0.82629	1.094	13.746	3	0	Plateau	64297000	36518000	27779000	172	1984	165	302;303;304;305;306	738;739;740;741;742;743;744;745	738		8	9606
AAVLQQVLER	0	1	Acetyl (Protein N-term)	1167.6612	0.66117189	475	P12270	TPR	Nucleoprotein TPR	yes	yes	1	0	0	10	0										1							24.386	24.386	2	0.00013442	22370	DP690-10	155.07	107.49			0.94435	1.1877	NaN	1	0	Median	9714200	4625900	5088200	173	475	166	307	746;747;748;749;750	747		5	9606
AAVPSGASTGIYEALELR	0	1	Unmodified	1803.9367	0.93667805	395	P06733;P13929;P09104	ENO1;ENO3;ENO2	Alpha-enolase;Beta-enolase;Gamma-enolase	yes	no	0	0	0	5	0					1												19.967	19.967	2	4.4811E-05	14326	DP690-5	124.51	107.57			1.449	1.5141	NaN	1	0	Median	41164000	17736000	23428000	174	395	167	308	751;752	751		2	9606
AAVTMSVPGR	0	1	Acetyl (Protein N-term)	1029.5277	0.52771487	1543	Q7Z406	MYH14	Myosin-14	yes	yes	1	0	0	15	0															1		18.425	18.425	2	0.075699	13238	DP690-15	60.118	21.312			NaN	NaN	NaN	0	0	Median	3446400	3446400	0	175	1543	168	309	753	753		1	9606
AAYEAELGDAR	0	1	Unmodified	1164.5411	0.54111633	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.5	0.5											1	1					13.762	13.762	2	7.7006E-05	7153	DP690-12	147.4	103.01			0.75597	0.84333	1.0575	2	0	Median	533650000	294170000	239480000	176	359	169	310;311	754;755;756;757;758;759;760;761	760		8	9606
AAYEAELGDARK	1	1	Unmodified	1292.6361	0.63607935	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	11.5	0.5											1	1					11.998	11.998	2	0.0033352	4969	DP690-11	99.788	73.346			0.86276	1.0667	0.29933	2	0	Median	99558000	57469000	42090000	177	359	170	312;313	762;763;764;765	762		4	9606
AAYFGIYDTAK	1	0	Unmodified	1218.5921	0.59208927	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	11.3	3.33							1		3					1	1	1	17.264	17.264	2	1.6466E-05	11899	DP690-14	191.17	169.32			0.85745	0.93077	7.1549	4	0	Median	3313499999.9999995	1761099999.9999998	1552399999.9999998	178	381	171	314;315;316;317;318;319;320	766;767;768;769;770;771;772;773;774;775;776;777;778;779;780	766		15	9606
AAYFGVYDTAK	1	0	Unmodified	1204.5764	0.57643921	473	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	15	0															1		16.297	16.297	2	0.010494	10479	DP690-15	77.533	52.695			0.87138	0.9434	NaN	1	0	Median	246840000	130010000	116840000	179	473	172	321	781;782	782		2	9606
AAYLQETGKPLDETLKK	3	0	Unmodified	1904.0255	0.025493054	365	P04083	ANXA1	Annexin A1	yes	yes	0	0	2	6	0						1											13.712	13.712	3	0.0024419	6606	DP690-6	87.519	68.939			1.0316	1.0312	NaN	1	0	Median	15943000	6476300	9466400	180	365	173	322	783	783		1	9606
AAYNVTLLNFMDPQK	1	0	Oxidation (M)	1739.8553	0.8552566	2064	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	1	0	4	0				1													19.415	19.415	2	2.0761E-05	13985	DP690-4	129.34	108.31			0.74464	0.81756	NaN	1	0	Median	13960000	7788000	6171700	181	2064	174	323	784;785;786;787	785	2585	4	9606
AAYPDLENPPLLVTPSQQAK	1	0	Unmodified	2151.1212	0.12118435	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	9.33	3.77				1								2					19.303	19.303	2	3.4572E-13	14930	DP690-12	178.67	178.67			0.64309	0.72774	11.073	2	0	Median	55202000	35524000	19677000	182	886	175	324;325;326	788;789;790;791;792;793;794;795;796;797;798	793		11	9606
ACCISTGGHSQCSESLPVR	0	1	Unmodified	2104.9088	0.90884187	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	10.5	0.5										1	1						12.706	12.706	3	9.3281E-12	6202	DP690-10	167.29	145.51			0.8461	1.0323	19.992	2	0	Median	105960000	58977000	46980000	183	1399	176	327;328	799;800;801;802;803	800		5	9606
ACDSVTSNVLPLLLEQFHK	1	0	Unmodified	2170.1092	0.10923946	1931	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	3	0			1														22.292	22.292	3	0.017344	17892	DP690-3	53.278	53.278			1.1355	1.1902	NaN	1	0	Median	4435400	1910400	2525100	184	1931	177	329	804;805	805		2	9606
ACGDSTLTQITAGLDPVGR	0	1	Unmodified	1930.9418	0.94183978	1001	P62879	GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	yes	yes	0	0	0	14	0														1			20.281	20.281	2	3.1687E-08	15974	DP690-14	195.94	137.16			0.878	1.0647	NaN	1	0	Median	29374000	16444000	12930000	185	1001	178	330	806;807;808	806		3	9606
ACGLVASNLNLKPGECLR	1	1	Acetyl (Protein N-term)	2013.0136	0.013564934	433	P09382	LGALS1	Galectin-1	yes	yes	1	0	1	12	4								1								1	18.981	18.981	2	7.7949E-32	13484	DP690-16	258.23	218.08			0.68438	0.76452	14.987	2	0	Median	87681000	51565000	36117000	186	433	179	331;332	809;810;811;812;813;814;815;816;817;818;819;820	813		12	9606
ACIGDTLCQK	1	0	Unmodified	1164.5267	0.5267286	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														13.104	13.104	2	0.0089296	6092	DP690-3	85.161	73.939			0.80777	0.86226	NaN	1	0	Median	25210000	13635000	11575000	187	5	180	333	821;822	821		2	9606
ACLDTAVENMPSLK	1	0	Oxidation (M)	1563.7273	0.7272789	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	2	0		1															14.777	14.777	2	0.00019907	7438	DP690-2	121.68	79.469			0.69448	0.69923	NaN	1	0	Median	10098000	5608200	4489300	188	789	181	334	823;824;825;826	826	1176	4	9606
ACLDTAVENMPSLK	1	0	Unmodified	1547.7324	0.73236428	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															17.651	17.651	2	0.030602	10931	DP690-2	89.356	22.436			NaN	NaN	NaN	0	0	Median	1940900	1940900	0	189	789	181	335	827	827		1	9606
ACLVTTVTSSGPSQSTIK	1	0	Unmodified	1835.9299	0.92987811	2060	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	11	0											1						15.39	15.39	2	0.0058721	9952	DP690-11	131.32	87.904			NaN	NaN	NaN	0	0	Median	0	0	0	190	2060	182	336	828	828		1	9606
ACQLSVVVDDKK	2	0	Unmodified	1360.7021	0.70205043	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	1	10	0										1							12.663	12.663	3	0.010101	6132	DP690-10	65.563	43.234			0.78372	0.9268	NaN	1	0	Median	162660000	92555000	70107000	191	591	183	337	829;830;831;832	832		4	9606
ACQSIYPLHDVFVR	0	1	Unmodified	1703.8454	0.84536062	946	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	14.3	0.471														2	1		17.428	17.428	2;3	2.3968E-05	12220	DP690-14	124.38	101.84			0.81787	0.91668	0.54582	2	0	Median	450660000	264140000	186520000	192	946	184	338;339;340	833;834;835;836;837;838;839;840;841	834		9	9606
ACVCQTLGISPEEK	1	0	Unmodified	1590.7382	0.73817794	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							15.246	15.246	2	0.0014317	9937	DP690-10	101.35	69.871			0.66664	0.82221	NaN	1	0	Median	54966000	34063000	20903000	193	13	185	341	842;843;844	843		3	9606
ADAASQVLLGSGLTILSQPLMYVK	1	0	Acetyl (Protein N-term);Oxidation (M)	2532.3509	0.35092629	2517	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	1	1	0	11	2.83									2						1		28.791	28.791	2	1.2061E-06	23721	DP690-9	134.85	96.901			NaN	NaN	NaN	0	0	Median	0	0	0	194	2517	186	342;343;344	845;846;847	847	2956	3	9606
ADADTVLLFLK	1	0	Unmodified	1204.6703	0.67033959	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								21.747	21.747	2	0.0059727	16949	DP690-9	101.46	67.287			1.044	1.2739	NaN	1	0	Median	2652800	1572300	1080400	195	2272	187	345	848;849	849		2	9606
ADAEGESDLENSR	0	1	Unmodified	1391.5801	0.58008061	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															11.763	11.763	2	6.2825E-05	3855	DP690-2	175.15	124.09			1.4083	1.4521	NaN	1	0	Median	3968200	1576000	2392200	196	2482	188	346	850;851	850		2	9606
ADAFGDELFSVFEGDSTTAAGTK	1	0	Acetyl (Protein N-term)	2377.0598	0.059765888	726	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	1	0	0	11	0											4						27.598	27.598	2	7.1243E-33	25544	DP690-11	212.7	162.56			NaN	NaN	NaN	0	0	Median	1011500	1011500	0	197	726	189	347;348;349;350	852;853;854;855	852		4	9606
ADCILYYGFGDIFR	0	1	Unmodified	1708.7919	0.79192806	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	10.7	1.25									1		1	1					23.42	23.42	2	4.1557E-05	19899	DP690-12	134.38	95.234			0.9129	1.0988	0.81518	2	0	Median	54522000	28650000	25872000	198	751	190	351;352;353	856;857;858;859;860;861;862;863;864;865;866	864		11	9606
ADDADEFGYSR	0	1	Unmodified	1244.4946	0.49456007	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	11	0											1						14.256	14.256	2	0.011167	8299	DP690-11	76.228	60.967			0.78607	0.93781	NaN	1	0	Median	37053000	20196000	16857000	199	1524	191	354	867	867		1	9606
ADDLDFETGDAGASATFPMQCSALR	0	1	Acetyl (Protein N-term);Oxidation (M)	2703.1429	0.14286037	1021	P63241;Q6IS14	EIF5A;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like	yes	no	1	1	0	16	0																2	21.567	21.567	2	9.4203E-05	16516	DP690-16	113.29	103.19			0.78379	0.90336	NaN	1	0	Median	1030400	586330	444090	200	1021	192	355;356	868;869;870;871;872	871	1548	5	9606
ADDPYAHLSK	1	0	Unmodified	1115.5247	0.52473799	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	11	0											1						11.572	11.572	3	0.022298	4347	DP690-11	80.102	27.847			NaN	NaN	NaN	0	0	Median	6874800	0	6874800	201	1687	193	357	873;874	873		2	9606
ADEALFLLLHNEMVSGVYK	1	0	Acetyl (Protein N-term);Oxidation (M)	2206.098	0.09800607	1563	Q86SZ2	TRAPPC6B	Trafficking protein particle complex subunit 6B	yes	yes	1	1	0	16	0																1	24.054	24.054	2	2.3809E-05	18980	DP690-16	122.78	106.76			0.89687	1.0298	NaN	1	0	Median	1009600	533590	476050	202	1563	194	358	875;876;877;878;879;880	877	2237	6	9606
ADEASELACPTPK	1	0	Unmodified	1387.6289	0.62894506	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	3	0.816		1	1	1													13.274	13.274	2	1.3794E-13	5614	DP690-2	295.32	245.9			0.72182	0.75443	2.3622	2	0	Median	115190000	66728000	48460000	203	789	195	359;360;361	881;882;883;884;885;886;887;888;889;890;891	884		11	9606
ADEDGEGIHPSAPHR	0	1	Acetyl (Protein N-term)	1628.7179	0.7179115	1892	Q96L92	SNX27	Sorting nexin-27	yes	yes	1	0	0	12	0												1					11.789	11.789	3	0.002472	4590	DP690-12	77.192	63.108			0.59988	0.71335	NaN	1	0	Median	66879000	41639000	25240000	204	1892	196	362	892;893;894	894		3	9606
ADEGISFR	0	1	Unmodified	893.4243	0.42429566	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	12.7	3.68							1	1							3	1	13.99	13.99	2	0.028428	12255	DP690-15	125.25	60.449			0.95337	0.93911	5.0614	4	0	Median	11760000000	6073699999.999999	5686200000	205	1128	197	363;364;365;366;367;368	895;896;897;898;899;900	895		2	9606
ADFCIIHYAGK	1	0	Unmodified	1293.6176	0.61759251	668;669	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	2	0		1															15.905	15.905	2	0.0041323	8778	DP690-2	89.886	62.997			1.2283	1.2417	NaN	1	0	Median	20791000	8846100	11945000	206	668;669	198	369	901;902;903;904	903		4	9606
ADFDDRVSDEEK	1	1	Acetyl (Protein N-term)	1466.6161	0.61613177	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	1	0	1	10.5	4.56						2								1		1	14.83	14.83	2	1.7103E-05	7847	DP690-6	134.75	98.436			0.83585	0.94435	8.6382	4	0	Median	279540000	146390000	133150000	207	864	199	370;371;372;373	905;906;907;908;909;910;911;912;913;914;915;916;917;918;919	912		15	9606
ADFDDRVSDEEKVR	1	2	Acetyl (Protein N-term)	1721.7857	0.78565671	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	1	0	2	11.2	4.31						2								2		1	14.536	14.536	2;3	3.0666E-05	8326	DP690-14	142.19	104.77			0.76463	0.81324	10.71	4	0	Median	1694299999.9999998	920630000	773660000	208	864	200	374;375;376;377;378	920;921;922;923;924;925;926;927;928;929;930;931	925		12	9606
ADFDNTVAIHPTSSEELVTLR	0	1	Unmodified	2314.1441	0.14410464	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	4	0				2													18.098	18.098	2;3	5.4006E-23	12491	DP690-4	201.3	163.11			0.76831	0.8294	NaN	1	0	Median	72397000	42488000	29909000	209	353	201	379;380	932;933;934;935	934		4	9606
ADFSGMSQTDLSLSK	1	0	Oxidation (M)	1601.7243	0.72430201	661	P35237	SERPINB6	Serpin B6	yes	yes	0	1	0	6	0						1											15.306	15.306	2	0.058056	8531	DP690-6	80.312	54.3			NaN	NaN	NaN	0	0	Median	1791500	0	1791500	210	661	202	381	936	936		1	9606
ADFVCSTVQKPDAANYYYLIILK	2	0	Unmodified	2691.3618	0.36182533	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	10	0										1							21.012	21.012	3	6.9048E-05	18116	DP690-10	120.15	104.12			0.69659	0.82226	NaN	1	0	Median	166570000	94303000	72271000	211	2190	203	382	937;938;939;940	937		4	9606
ADGELNVDSLITR	0	1	Acetyl (Protein N-term)	1443.7205	0.72053726	964	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	1	0	0	6	0						1											22.018	22.018	2	0.0015526	16256	DP690-6	114.71	66.108			NaN	NaN	NaN	0	0	Median	1804900	0	1804900	212	964	204	383	941;942	942		2	9606
ADGQVAELLLR	0	1	Acetyl (Protein N-term)	1225.6667	0.6666512	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	1	0	0	11	3.16				1								3	2				23.229	23.229	2	7.3994E-06	19651	DP690-12	245.5	178.33			0.95226	1.0968	15.883	3	0	Plateau	148750000	76965000	71788000	213	2434	205	384;385;386;387;388;389	943;944;945;946;947;948;949;950;951;952;953;954;955;956	944		14	9606
ADGYVLEGK	1	0	Unmodified	950.47091	0.4709115	967	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	15	0															1		12.952	12.952	2	0.012061	5984	DP690-15	87.476	60.783			0.95608	1.0568	NaN	1	0	Median	148720000	73345000	75380000	214	967	206	390	957;958;959;960	958		4	9606
ADHQPLTEASYVNLPTIALCNTDSPLR	0	1	Unmodified	2995.4709	0.47093486	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	0	12.2	3.63						1								2	1		20.378	20.378	2;3	2.4841E-36	16001	DP690-14	213.39	195.89			0.68888	0.76222	11.648	2	0	Median	1002999999.9999999	590270000	412710000	215	428	207	391;392;393;394	961;962;963;964;965;966;967;968;969;970;971;972	962		12	9606
ADHSFSDGVPSDSVEAAK	1	0	Acetyl (Protein N-term)	1859.8174	0.81735077	1955	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	1	0	0	4.5	0.5				1	1												15.441	15.441	2	2.0494E-16	8606	DP690-5	242.8	193.61			0.90186	0.97481	NaN	1	0	Median	8046100	4237100	3809000	216	1955	208	395;396	973;974;975;976	976		4	9606
ADIDISGPNVDVDVPDVNIEGPDAK	1	0	Unmodified	2563.229	0.22895648	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								20.43	20.43	2	6.0908E-07	15381	DP690-9	141.6	122.78			NaN	NaN	NaN	0	0	Median	4842400	3146000	1696400	217	1145	209	397	977	977		1	9606
ADIDVSGPSVDTDAPDLDIEGPEGK	1	0	Unmodified	2511.15	0.15003746	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.67	0.471									1	2							19.069	19.069	2	7.593899999999999E-46	13720	DP690-9	243.99	243.99			0.60809	0.76271	10.892	2	0	Median	62399000	37964000	24435000	218	1145	210	398;399;400	978;979;980;981;982;983;984;985	984		8	9606
ADIEMPFDPSK	1	0	Unmodified	1248.5696	0.56963927	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							18.331	18.331	2	0.00028973	14328	DP690-10	120.27	79.279			0.71464	0.87616	NaN	1	0	Median	164860000	93437000	71427000	219	250	211	401	986;987	987		2	9606
ADIEVACYGYEGIDAVK	1	0	Unmodified	1871.8611	0.86112984	382	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	14	0														1			18.64	18.64	2	0.027788	13835	DP690-14	99.844	54.997			NaN	NaN	NaN	0	0	Median	0	0	0	220	382	212	402	988	988		1	9606
ADIIHACDIVEDAAIAYGYNNIQMTLPK	1	0	Oxidation (M)	3134.5053	0.50527146	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	1	0	12	0												1					22.856	22.856	3	1.2603E-08	19304	DP690-12	141.48	141.48			0.84464	1.015	NaN	1	0	Median	26627000	13731000	12896000	221	2210	213	403	989;990;991;992;993;994;995;996	993	2686	8	9606
ADIIHACDIVEDAAIAYGYNNIQMTLPK	1	0	Unmodified	3118.5104	0.51035684	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	12	0												1					23.371	23.371	3	0.062941	19889	DP690-12	53.777	27.973			NaN	NaN	NaN	0	0	Median	0	0	0	222	2210	213	404	997	997		1	9606
ADIQTER	0	1	Acetyl (Protein N-term)	873.41921	0.41921028	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	1	0	0	16	0																1	12.867	12.867	1	0.017291	6203	DP690-16	82.671	39.605			0.86336	0.91232	NaN	1	0	Median	308200000	162360000	145840000	223	976	214	405	998	998		0	9606
ADISLDELIR	0	1	Acetyl (Protein N-term)	1185.6241	0.62411768	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	1	0	0	13	0													1				23.826	23.826	2	0.026534	20110	DP690-13	113.62	71.023			0.67465	0.77556	NaN	1	0	Median	1801500	1046000	755510	224	2045	215	406	999	999		0	9606
ADISLDELIRK	1	1	Acetyl (Protein N-term)	1313.7191	0.7190807	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	1	0	1	3	0			1														21.752	21.752	2	0.026114	17217	DP690-3	72.547	24.973			NaN	NaN	NaN	0	0	Median	0	0	0	225	2045	216	407	1000	1000		1	9606
ADKDYHFKVDNDENEHQLSLR	2	1	Unmodified	2572.1942	0.19424273	397	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	15	0.894														2	1	2	13.26	13.26	4;5	2.3687E-11	6357	DP690-15	161.14	126.56			0.84266	0.9497	9.3049	5	0	Median	6120299999.999999	3253499999.9999995	2866800000	226	397	217	408;409;410;411;412	1001;1002;1003;1004;1005;1006;1007;1008;1009;1010;1011;1012	1008		12	9606
ADKEAAFDDAVEER	1	1	Acetyl (Protein N-term)	1606.7111	0.71109479	1142	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	1	0	1	14.7	1.25													1		1	1	16.125	16.125	2	1.0374E-10	10331	DP690-13	212.1	198.16			0.78062	0.85939	9.7715	2	0	Median	376540000	209850000	166690000	227	1142	218	413;414;415	1013;1014;1015;1016;1017;1018;1019	1015		7	9606
ADKMDMSLDDIIK	2	0	Acetyl (Protein N-term);2 Oxidation (M)	1567.711	0.71096013	1574	Q86V81	ALYREF	THO complex subunit 4	yes	yes	1	2	1	15	0															1		17.448	17.448	2	6.5654E-06	11948	DP690-15	136.27	77.683			0.89385	1.0242	NaN	1	0	Median	151170000	79605000	71567000	228	1574	219	416	1020;1021;1022;1023	1023	2240;2241	4	9606
ADLAAVEAK	1	0	Unmodified	886.476	0.47599688	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	2	0		1															12.262	12.262	2	0.047116	4507	DP690-2	68.371	23.976			1.1049	1.1095	NaN	1	0	Median	6398600	2774500	3624000	229	1264	220	417	1024	1024		1	9606
ADLAEEYSKDR	1	1	Unmodified	1295.5994	0.59935949	1030	P68036	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	yes	0	0	1	8	0								1									12.285	12.285	3	0.00016341	5017	DP690-8	118.9	86.651			0.93787	1.0905	NaN	1	0	Median	7401100	3657400	3743700	230	1030	221	418	1025;1026	1026		2	9606
ADLANEEKPAIAPPVFVFQK	2	0	Acetyl (Protein N-term)	2225.1732	0.17321992	2129	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	1	0	1	4	0				1													21.195	21.195	2	8.0835E-05	16049	DP690-4	134.04	109.69			0.56691	0.57787	NaN	1	0	Median	2006100	1239700	766480	231	2129	222	419	1027;1028;1029	1027		3	9606
ADLDKLNIDSIIQR	1	1	Acetyl (Protein N-term)	1654.889	0.88899957	683	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	1	0	1	12.8	3.96						1								1	1	1	21.511	21.511	2	8.5308E-25	15634	DP690-6	308.6	308.6			0.84346	0.99727	194.62	3	0	Median	136600000	54964000	81637000	232	683	223	420;421;422;423	1030;1031;1032;1033;1034;1035;1036;1037;1038;1039;1040;1041	1037		12	9606
ADLDVSGPK	1	0	Unmodified	900.45526	0.45526144	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	10	0										2							12.019	12.019	2	0.037971	5127	DP690-10	107.01	0			NaN	NaN	NaN	0	0	Median	0	0	0	233	1145	224	424;425	1042;1043	1042		2	9606
ADLEEQLSDEEKVR	1	1	Acetyl (Protein N-term)	1701.8057	0.80572345	768	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	1	0	1	10	4						1								1			18.276	18.276	2	1.884E-14	13320	DP690-14	217.22	176.14			0.85424	0.96587	15.312	2	0	Median	172130000	87744000	84390000	234	768	225	426;427	1044;1045;1046	1045		3	9606
ADLEMQIENLKEELAYLKK	3	0	Oxidation (M)	2293.1875	0.18754936	45	CON__Q04695;Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	1	2	13	0													1				21.084	21.084	4	0.049926	16941	DP690-13	59.252	23.863		+	NaN	NaN	NaN	0	0	Median	13295000	0	13295000	235	45	226	428	1047	1047		1	9606
ADLEMQIESLKEELAYLK	2	0	Oxidation (M)	2138.0817	0.081687304	29	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	1	1	1	0	1																23.075	23.075	3	0.00046929	14791	DP690-1	123.42	90.893		+	NaN	NaN	NaN	0	0	Median	2442300	2442300	0	236	29	227	429	1048	1048	29	1	9606
ADLEMQIESLKEELAYLKK	3	0	Oxidation (M)	2266.1767	0.17665032	29	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	1	2	1	0	1																21.144	21.144	4	0.0099498	12823	DP690-1	82.663	39.28		+	NaN	NaN	NaN	0	0	Median	3028900	3028900	0	237	29	228	430	1049	1049	29	1	9606
ADLEMQIESLTEELAYLK	1	0	Oxidation (M)	2111.0344	0.03440276	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	0	7.5	3.45	1				1				2	1	1						26.372	26.372	2	2.5637E-13	21931	DP690-9	187.74	135.67		+	NaN	NaN	NaN	0	0	Median	9045700	9045700	0	238	42	229	431;432;433;434;435;436	1050;1051;1052;1053;1054;1055;1056;1057;1058;1059;1060;1061	1060	47	12	9606
ADLEMQIESLTEELAYLKK	2	0	Oxidation (M)	2239.1294	0.12936578	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	1	6.67	4.03	1								1	1							23.717	23.717	3	1.5072E-38	15368	DP690-1	231.21	180.14		+	NaN	NaN	NaN	0	0	Median	37859000	37859000	0	239	42	230	437;438;439	1062;1063;1064;1065;1066;1067	1064	47	6	9606
ADLEMQIESLTEELAYLKK	2	0	Unmodified	2223.1345	0.13445116	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	9	0									1								23.527	23.527	3	0.0093393	18973	DP690-9	84.653	43.809		+	NaN	NaN	NaN	0	0	Median	1934700	1934700	0	240	42	230	440	1068;1069	1069		2	9606
ADLFPILMR	0	1	Unmodified	1074.5896	0.58958685	271	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	10	0										1							21.401	21.401	2	0.048366	18785	DP690-10	67.981	38.831			0.96508	1.207	NaN	1	0	Median	8451100	5055100	3396000	241	271	231	441	1070;1071;1072	1072		3	9606
ADLINNLGTIAK	1	0	Unmodified	1241.698	0.69795133	416;409;1411	P07900;Q14568;P08238;Q58FF8	HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	6	3.08			1	1		1					1						17.936	17.936	2	8.1106E-05	12496	DP690-3	133.23	95.499			1.0907	1.2298	20.466	3	0	Median	693120000	368040000	325090000	242	409;416;1411	232	442;443;444;445	1073;1074;1075;1076;1077;1078;1079;1080;1081;1082	1076		10	9606
ADLNQGIGEPQSPSR	0	1	Unmodified	1567.759	0.75904803	1830	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	15	0															1		13.425	13.425	2	6.8053E-05	6613	DP690-15	124.39	93.821			0.71149	0.8216	NaN	1	0	Median	10285000	6387300	3897300	243	1830	233	446	1083;1084;1085	1083		3	9606
ADLSLADALTEPSPDIEGEIKR	1	1	Acetyl (Protein N-term)	2381.1962	0.19619979	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	1	0	1	9.75	0.433									1	3							22.246	22.246	2	1.4282E-62	19571	DP690-10	319.64	277.64			0.6965	0.809	NaN	1	0	Median	263070000	151500000	111560000	244	604	234	447;448;449;450	1086;1087;1088;1089;1090;1091;1092;1093	1090		8	9606
ADLTALFLPR	0	1	Unmodified	1115.6339	0.63389451	1176	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	6.5	3.5			1							1							21.605	21.605	2	0.0026356	17037	DP690-3	98.033	68.884			1.056	1.2378	39.752	2	0	Median	19174000	9204900	9969600	245	1176	235	451;452	1094;1095;1096;1097;1098	1096		5	9606
ADLTEYLSTHYK	1	0	Unmodified	1439.6933	0.69325988	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	12.2	3.05					1				1				4	1	2		16.964	16.964	2;3	2.4798E-08	11446	DP690-13	210.64	183.16			0.87924	1.0211	19.966	7	0	Median	7020899999.999999	3846599999.9999995	3174399999.9999995	246	637	236	453;454;455;456;457;458;459;460;461	1099;1100;1101;1102;1103;1104;1105;1106;1107;1108;1109;1110;1111;1112;1113;1114;1115;1116;1117;1118;1119;1120;1121;1122	1103		24	9606
ADLVIVGAEGVVENGGIINK	1	0	Unmodified	1966.0735	0.073505879	1265	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	14	0														1			20.392	20.392	2	1.305E-06	16080	DP690-14	154.72	106.15			NaN	NaN	NaN	0	0	Median	19804000	0	19804000	247	1265	237	462	1123;1124	1123		2	9606
ADMLCNSQSNDILQHQGSNCGGTSNK	1	0	Oxidation (M)	2851.192	0.1919526	2222	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	1	0	12	0												1					12.946	12.946	3	0.0070713	6091	DP690-12	70.449	59.998			NaN	NaN	NaN	0	0	Median	8735600	8735600	0	248	2222	238	463	1125	1125	2703	1	9606
ADMVIEAVFEDLSLK	1	0	Oxidation (M)	1694.8437	0.84368886	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	1	0	11	0											1						24.216	24.216	2	0.0012951	21954	DP690-11	147.58	98.596			NaN	NaN	NaN	0	0	Median	0	0	0	249	713	239	464	1126	1126	1041	1	9606
ADNDAGNAAIDSLLNYETVK	1	0	Unmodified	2092.9913	0.99129239	233	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	10	0										1							21.147	21.147	2	0.040009	18280	DP690-10	89.232	50.216			NaN	NaN	NaN	0	0	Median	0	0	0	250	233	240	465	1127	1127		1	9606
ADPAFGLESSGIAGTTSDEPERIEESGNDEAR	0	2	Unmodified	3306.476	0.47601606	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	1	10	0										1							17.831	17.831	3	2.8016E-13	13865	DP690-10	137.41	115.09			NaN	NaN	NaN	0	0	Median	82951000	82951000	0	251	1710	241	466	1128;1129	1128		2	9606
ADPDGPEAQAEACSGER	0	1	Unmodified	1758.7115	0.71150549	2248	Q9NX24	NHP2	H/ACA ribonucleoprotein complex subunit 2	yes	yes	0	0	0	16	0																1	12.534	12.534	2	2.4549E-08	5334	DP690-16	177.21	144.71			0.7454	0.87145	NaN	1	0	Median	6473900	3505200	2968700	252	2248	242	467	1130;1131;1132;1133	1132		4	9606
ADPEELFTKLEK	2	0	Unmodified	1418.7293	0.72931103	2518	Q9Y6E0	STK24	Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	yes	yes	0	0	1	12	0												1					18.546	18.546	2	0.031461	13961	DP690-12	77.533	21.984			0.66185	0.76947	NaN	1	0	Median	32888000	16426000	16463000	253	2518	243	468	1134	1134		1	9606
ADPSLLGFSVNASSER	0	1	Unmodified	1648.8057	0.80566387	1512	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	10	0										1							18.95	18.95	2	0.0067299	15319	DP690-10	73.927	31.896			1.5644	1.9292	NaN	1	0	Median	133470000	62970000	70498000	254	1512	244	469	1135	1135		1	9606
ADQDRLDLEER	0	2	Unmodified	1358.6426	0.64262129	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	1	10	0										1							12.859	12.859	3	0.012417	6366	DP690-10	68.786	49.024			0.84975	1.0121	NaN	1	0	Median	252630000	140120000	112510000	255	1285	245	470	1136;1137;1138;1139	1138		4	9606
ADQFEYVMYGK	1	0	Oxidation (M)	1365.5911	0.59110299	854	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	1	0	16	0																1	15.848	15.848	2	0.02599	9628	DP690-16	74.162	49.025			0.95668	1.0914	NaN	1	0	Median	40402000	22918000	17484000	256	854	246	471	1140;1141;1142	1140	1296	3	9606
ADQFLVGTSR	0	1	Unmodified	1092.5564	0.55637247	2165	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	11	0											1						14.737	14.737	2	0.00025528	9070	DP690-11	125.71	69.279			0.93228	1.1248	NaN	1	0	Median	90055000	50012000	40043000	257	2165	247	472	1143;1144	1144		2	9606
ADQLTEEQIAEFK	1	0	Acetyl (Protein N-term)	1562.7464	0.74641766	450	P0DP25;P0DP24;P0DP23			yes	no	1	0	0	16	0																3	20.695	20.695	2	0.017956	15472	DP690-16	83.397	33.202			NaN	NaN	NaN	0	0	Median	0	0	0	258	450	248	473;474;475	1145;1146;1147	1147		3	9606
ADQLTEEQIAEFKEAFSLFDKDGDGTITTK	3	0	Acetyl (Protein N-term)	3388.6198	0.61982675	450	P0DP25;P0DP24;P0DP23			yes	no	1	0	2	16	0																1	24.287	24.287	3	1.0208E-08	19209	DP690-16	133.45	133.45			0.70301	0.86469	NaN	1	0	Median	2049200	1001700	1047400	259	450	249	476	1148;1149;1150;1151;1152;1153;1154	1149		7	9606
ADQVDTQQLMR	0	1	Oxidation (M)	1319.614	0.6139637	2099	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	1	0	12	0												1					12.203	12.203	2	0.0040121	5140	DP690-12	94.409	52.061			1.1671	1.42	NaN	1	0	Median	12750000	5614500	7135800	260	2099	250	477	1155	1155	2611	1	9606
ADRDESSPYAAMLAAQDVAQR	0	2	Oxidation (M)	2280.0441	0.044073019	971	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	1	16	0																2	15.266	15.266	2;3	0.0001288	8871	DP690-16	105.51	84.769			0.82282	0.86934	1.8426	2	0	Median	172450000	92886000	79566000	261	971	251	478;479	1156;1157;1158;1159;1160;1161;1162;1163;1164	1159	1490	9	9606
ADSAVSQEQLR	0	1	Unmodified	1202.5891	0.58912916	2376	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	13	0													1				11.441	11.441	2	2.5512E-06	3955	DP690-13	210.6	162.73			0.72766	0.89365	NaN	1	0	Median	28033000	16549000	11485000	262	2376	252	480	1165;1166;1167;1168	1165		4	9606
ADSGLREPQEDSQK	1	1	Acetyl (Protein N-term)	1600.7329	0.73289286	1702	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	1	0	1	4	0				3													12.394	12.394	2	0.0017608	5072	DP690-4	116.54	62.782			NaN	NaN	NaN	0	0	Median	1789900	1789900	0	263	1702	253	481;482;483	1169;1170;1171;1172	1171		4	9606
ADSLLAVVK	1	0	Unmodified	914.54368	0.54368251	1251	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	yes	no	0	0	0	11	0											1						16.78	16.78	2	0.0091926	11949	DP690-11	90.37	57.477			0.99933	1.2055	NaN	1	0	Median	49635000	25580000	24055000	264	1251	254	484	1173;1174;1175;1176	1173		4	9606
ADSWYIYAGFVAVSFMDVNSGSLVMRENGGTELDR	0	2	Unmodified	3855.7873	0.78725998	2576				yes	yes	0	0	1	2	0		1															17.882	17.882	5	0.093328	11364	DP690-2	17.397	11.104	+		1.0036	1.0024	NaN	1	0	Median	15392000	6823100	8568600	265	2576	255	485	1177	1177		1	9606
ADTGHAFLAKPPAR	1	1	Unmodified	1450.7681	0.76809658	2512	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	0	0	1	10	0										1							11.116	11.116	3	0.0058748	3820	DP690-10	71.933	45.401			1.2122	1.5268	NaN	1	0	Median	76332000	34155000	42178000	266	2512	256	486	1178;1179	1178		2	9606
ADTLTDEINFLR	0	1	Unmodified	1406.7042	0.70415892	31;368	CON__P02538;P02538;CON__P48668;P48668;P04259	KRT6A;KRT6C;KRT6B	Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6B	no	no	0	0	0	9.25	6.3		1		1											1	1	20.761	20.761	2	2.4729E-11	15488	DP690-16	222	152.4		+	NaN	NaN	NaN	0	0	Median	13734000	13734000	0	267	31;368	257	487;488;489;490	1180;1181;1182;1183;1184;1185	1182		6	9606
ADTLTLEER	0	1	Unmodified	1046.5244	0.52440364	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	12	0												1					13.938	13.938	2	0.0049976	7440	DP690-12	99.802	60.84			0.92654	1.0753	NaN	1	0	Median	114260000	57970000	56286000	268	2344	258	491	1186;1187;1188;1189	1188		4	9606
ADTLTPEECQQFK	1	0	Unmodified	1565.7032	0.70317264	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	13	0													1				14.437	14.437	2	8.8172E-06	7942	DP690-13	189.18	165.5			0.77934	0.9	NaN	1	0	Median	70848000	37107000	33741000	269	1351	259	492	1190;1191;1192;1193;1194	1194		5	9606
ADTLTPEECQQFKK	2	0	Unmodified	1693.7981	0.79813565	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	1	13	0													2				12.605	12.605	2;3	4.2592E-07	5424	DP690-13	195.51	195.51			0.77402	0.87472	3.0428	2	0	Median	127780000	69603000	58175000	270	1351	260	493;494	1195;1196;1197;1198;1199;1200;1201;1202	1202		8	9606
ADTNLGNILLNVLIPPNMPCTR	0	1	Oxidation (M)	2451.2614	0.26139978	2379	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	1	0	12	0												1					24.766	24.766	2	0.0030627	21354	DP690-12	75.445	63.062			0.48517	0.57475	NaN	1	0	Median	1037400	656420	381020	271	2379	261	495	1203	1203	2806	1	9606
ADTQTYQPYNK	1	0	Unmodified	1327.6044	0.60444487	1061	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	0	0	0	16	0																1	11.347	11.347	2	0.0001349	3958	DP690-16	168.26	146.81			0.8475	0.9867	NaN	1	0	Median	25031000	13218000	11814000	272	1061	262	496	1204;1205;1206;1207	1207		4	9606
ADTTSTVTPVPGQEK	1	0	Unmodified	1529.7573	0.7573167	2144	Q9H9B1	EHMT1	Histone-lysine N-methyltransferase EHMT1	yes	yes	0	0	0	10	0										1							12.262	12.262	2	0.00014307	5533	DP690-10	120.55	75.393			0.90852	1.1071	NaN	1	0	Median	21810000	9533400	12277000	273	2144	263	497	1208;1209	1208		2	9606
ADVDISGPK	1	0	Unmodified	900.45526	0.45526144	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	10	0										1							12.005	12.005	2	0.01728	5126	DP690-10	104.44	5.8076			NaN	NaN	NaN	0	0	Median	526500000	526500000	0	274	1145	264	498	1210	1210		1	9606
ADVEDGEETCALASHSGSSGSK	1	0	Acetyl (Protein N-term)	2234.9233	0.92334876	2312	Q9UBF6	RNF7	RING-box protein 2	yes	yes	1	0	0	10	3.46								3								1	14.754	14.754	2	1.7557E-83	8286	DP690-16	365.19	363			0.89552	1.0489	NaN	1	0	Median	10136000	3638600	6497000	275	2312	265	499;500;501;502	1211;1212;1213;1214;1215;1216;1217;1218;1219;1220	1213		10	9606
ADVFHAYLSLLK	1	0	Unmodified	1375.75	0.7499869	1576	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	3	0			4														21.458	21.458	2;3	0.00017389	16939	DP690-3	138.22	93.901			1.1755	1.2346	NaN	1	0	Median	8047000	4247200	3799800	276	1576	266	503;504;505;506	1221;1222;1223;1224;1225	1221		5	9606
ADVILSDMAPNATGFR	0	1	Oxidation (M)	1692.8141	0.81412007	2354	Q9UI43	FTSJ2	rRNA methyltransferase 2, mitochondrial	yes	yes	0	1	0	15	0															1		17.047	17.047	2	0.00053416	11459	DP690-15	138.2	95.869			NaN	NaN	NaN	0	0	Median	5832900	5832900	0	277	2354	267	507	1226;1227;1228	1226	2791	3	9606
ADVTTAFPTLGTDQVSELVPGKEELNIVK	2	0	Unmodified	3070.6074	0.60741157	717	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	1	12	0												1					21.026	21.026	3	2.5648E-05	17144	DP690-12	80.02	80.02			0.72815	0.84616	NaN	1	0	Median	8215700	4382400	3833300	278	717	268	508	1229;1230	1229		2	9606
ADVVVSGPK	1	0	Unmodified	870.48108	0.48108226	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	10	0										1							11.077	11.077	2	0.0043246	3805	DP690-10	102.51	73.365			0.7522	0.86292	NaN	1	0	Median	397590000	228230000	169360000	279	1145	269	509	1231;1232	1231		2	9606
ADWWTNTAHYNR	0	1	Unmodified	1533.6749	0.67492447	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							15.366	15.366	3	0.055744	10109	DP690-10	44.829	30.065			1.0439	1.3073	NaN	1	0	Median	54550000	26017000	28534000	280	1492	270	510	1233;1234;1235	1234		3	9606
AEAAAGAAGILLR	0	1	Unmodified	1182.6721	0.67207093	2308	Q9P2W1	PSMC3IP	Homologous-pairing protein 2 homolog	yes	yes	0	0	0	15	0															1		16.891	16.891	2	0.0048644	11329	DP690-15	91.584	70.212			0.69444	0.80326	NaN	1	0	Median	13933000	8414300	5518200	281	2308	271	511	1236	1236		1	9606
AEAESLYQSK	1	0	Unmodified	1124.535	0.53496832	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	1		1		1													11.974	11.974	2	9.4362E-16	4534	DP690-4	196.99	127.18		+	NaN	NaN	NaN	0	0	Median	36251000	36251000	0	282	369	272	512;513	1237;1238;1239	1239		3	9606
AEAESLYQSKYEELQITAGR	1	1	Unmodified	2285.1176	0.11755554	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	6.5	2.5				1					1								16.882	16.882	3	3.9459E-14	10948	DP690-4	182.09	152.51		+	0.62199	0.72139	NaN	1	0	Median	20205000	16687000	3517800	283	369	273	514;515	1240;1241;1242;1243	1240		4	9606
AEAESMYQIK	1	0	Oxidation (M)	1184.5383	0.53833914	38	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	1	0	13	0													1				11.955	11.955	2	0.0022491	4565	DP690-13	106.42	48.564		+	0.91585	1.065	NaN	1	0	Median	24569000	11267000	13303000	284	38	274	516	1244;1245	1245	37	2	9606
AEAESMYQIK	1	0	Unmodified	1168.5434	0.54342452	38	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	13	0													1				13.917	13.917	2	0.010984	7228	DP690-13	82.287	37.126		+	0.67658	0.78693	NaN	1	0	Median	30170000	17503000	12667000	285	38	274	517	1246;1247;1248	1246		3	9606
AEAESWYR	0	1	Unmodified	1010.4458	0.44575938	26	CON__O43790;CON__Q14533;O43790;Q14533;CON__Q6NT21;CON__P78385;CON__P78386;A6NCN2;P78385;P78386;CON__Q61726	KRT86;KRT81;KRT87P;KRT83;KRT85	Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb1;Putative keratin-87 protein;Keratin, type II cuticular Hb3;Keratin, type II cuticular Hb5	yes	no	0	0	0	7	0							1										13.716	13.716	2	0.057121	6751	DP690-7	110.81	67.365		+	0.76252	0.86174	NaN	1	0	Median	27729000	14791000	12937000	286	26	275	518	1249	1249		0	9606
AEAGAGSATEFQFR	0	1	Unmodified	1440.6634	0.66335673	762	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	0	11.8	3.77								2							1	1	15.689	15.689	2	2.8957E-09	9377	DP690-16	221.59	178.17			0.95917	1.046	NaN	1	0	Median	130880000	67587000	63296000	287	762	276	519;520;521;522	1250;1251;1252;1253;1254;1255;1256;1257	1252		8	9606
AEAGEAGQATAEAECHR	0	1	Unmodified	1756.7435	0.74347432	335	O95671	ASMTL	N-acetylserotonin O-methyltransferase-like protein	yes	yes	0	0	0	4	0				1													10.798	10.798	3	8.971E-08	3244	DP690-4	150.37	142.91			0.8727	1.0169	NaN	1	0	Median	12093000	6390400	5702500	288	335	277	523	1258;1259	1258		2	9606
AEAGGGWEGSASYK	1	0	Unmodified	1368.5946	0.59460847	1811	Q969T9	WBP2	WW domain-binding protein 2	yes	yes	0	0	0	10	4						1								1			13.375	13.375	2	8.4067E-05	6589	DP690-14	159.94	135.08			1.2707	1.4922	55.972	2	0	Median	96621000	46274000	50347000	289	1811	278	524;525	1260;1261;1262	1260		3	9606
AEAGVPAEFSIWTR	0	1	Unmodified	1532.7623	0.7623425	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.4	0.8									1	1	3						20.095	20.095	2	4.4965E-09	16805	DP690-10	199.68	169.06			0.79295	0.87378	11.244	2	0	Median	1855999999.9999998	935460000	920580000	290	549	279	526;527;528;529;530	1263;1264;1265;1266;1267;1268;1269;1270;1271;1272;1273;1274	1265		12	9606
AEASIQAGAGDGEWEESEVK	1	0	Unmodified	2061.9127	0.91270772	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.25	0.433									3	1							15.786	15.786	2	2.6793E-20	9545	DP690-9	195.94	155.21			NaN	NaN	NaN	0	0	Median	2986700	2986700	0	291	1145	280	531;532;533;534	1275;1276;1277;1278;1279;1280	1276		6	9606
AEASSANLGSGCEEKR	1	1	Acetyl (Protein N-term)	1706.753	0.75297638	1485	Q6P1K2	PMF1	Polyamine-modulated factor 1	yes	yes	1	0	1	15	0															2		12.174	12.174	2	1.3558E-18	4929	DP690-15	205.8	144.59			NaN	NaN	NaN	0	0	Median	2094300	2094300	0	292	1485	281	535;536	1281;1282;1283	1281		3	9606
AEDAVEAIR	0	1	Unmodified	972.48762	0.4876242	2028	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	yes	no	0	0	0	14	0														1			12.67	12.67	2	0.0045213	5730	DP690-14	101.72	41.04			1.1691	1.4161	NaN	1	0	Median	41095000	19936000	21159000	293	2028	282	537	1284	1284		1	9606
AEDGSVIDYELIDQDAR	0	1	Unmodified	1907.8749	0.87486565	404	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	12.9	2.26						1			2	1	1	2	1	14	1	1	22.248	22.248	2	9.6155E-49	14540	DP690-14	335.25	292.77			0.83957	0.98503	19.02	12	0	Median	5434600000	2980099999.9999995	2454500000	294	404	283	538;539;540;541;542;543;544;545;546;547;548;549;550;551;552;553;554;555;556;557;558;559;560;561	1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1295;1296;1297;1298;1299;1300;1301;1302;1303;1304;1305;1306;1307;1308;1309;1310;1311;1312;1313;1314;1315;1316;1317;1318;1319;1320;1321;1322;1323;1324;1325;1326;1327;1328;1329;1330;1331;1332;1333;1334;1335;1336;1337;1338;1339;1340	1297		56	9606
AEDGSVIDYELIDQDARDLYDAGVK	1	1	Unmodified	2769.2981	0.29809868	404	P07355	ANXA2	Annexin A2	yes	yes	0	0	1	14	0														1			20.811	20.811	3	0.00017851	16693	DP690-14	103.71	75.22			0.69553	0.87534	NaN	1	0	Median	30089000	17051000	13038000	295	404	284	562	1341;1342	1341		2	9606
AEDIPQMDDAFSQTVK	1	0	Oxidation (M)	1809.8091	0.80909427	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	1	0	10	0										1							15.673	15.673	2	0.020284	10503	DP690-10	103.88	34.535			NaN	NaN	NaN	0	0	Median	0	0	0	296	2276	285	563	1343	1343	2729	1	9606
AEDKEWMPVTK	2	0	Oxidation (M)	1348.6333	0.63330216	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	1	1	14	0														2			11.351	11.351	2;3	0.00037454	3938	DP690-14	172.21	142.55			0.76494	0.85623	6.8492	2	0	Median	205250000	124310000	80933000	297	502	286	564;565	1344;1345;1346;1347;1348	1346	636	5	9606
AEDKEWMPVTK	2	0	Unmodified	1332.6384	0.63838754	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	1	14	0														2			13.406	13.406	2;3	0.00027622	6653	DP690-14	109.39	85.113			0.80985	0.90304	NaN	1	0	Median	284850000	175220000	109620000	298	502	286	566;567	1349;1350;1351;1352	1349		4	9606
AEDLNIAPR	0	1	Unmodified	997.51926	0.51925868	1928	Q96SZ5	ADO	2-aminoethanethiol dioxygenase	yes	yes	0	0	0	7	0							1										13.522	13.522	2	0.003105	6580	DP690-7	132.08	42.332			NaN	NaN	NaN	0	0	Median	16203000	16203000	0	299	1928	287	568	1353	1353		1	9606
AEDNADTLALVFEAPNQEK	1	0	Unmodified	2073.9855	0.98547873	472	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	14.5	0.5														1	1		20.453	20.453	2	2.7415000000000003E-31	16192	DP690-14	314.55	275.59			0.96618	1.1394	12.011	2	0	Median	57388000	28840000	28548000	300	472	288	569;570	1354;1355;1356;1357;1358	1355		5	9606
AEDSICLADSKPLPHQNVTNHVGK	2	0	Unmodified	2629.2918	0.29184828	1551	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	1	10	0										1							12.945	12.945	4	0.0012901	6557	DP690-10	66.041	52.398			0.73207	0.9255	NaN	1	0	Median	67895000	34492000	33403000	301	1551	289	571	1359	1359		1	9606
AEDYEENLQVMR	0	1	Oxidation (M)	1511.6562	0.65622244	1092	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	1	0	11	0											2						14.428	14.428	2	0.0064537	8585	DP690-11	88.496	61.607			0.76105	0.90742	NaN	1	0	Median	42671000	21018000	21653000	302	1092	290	572;573	1360;1361	1360	1713	2	9606
AEDYEENLQVMR	0	1	Unmodified	1495.6613	0.66130782	1092	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	11	0											1						16.332	16.332	2	0.00030083	11358	DP690-11	147.2	102.88			NaN	NaN	NaN	0	0	Median	22597000	22597000	0	303	1092	290	574	1362;1363	1362		2	9606
AEEDTQFNYHR	0	1	Unmodified	1408.6008	0.60075648	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	9.75	0.433									1	3							11.858	11.858	2;3	0.0038125	4995	DP690-10	98.943	80.611			0.81573	1.0173	16.91	2	0	Median	26938000	13102000	13835000	304	1285	291	575;576;577;578	1364;1365;1366;1367;1368;1369;1370	1367		7	9606
AEEDVEPECIMEK	1	0	Unmodified	1577.6589	0.65892456	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	8	4				1								1					15.718	15.718	2	5.0834E-05	9478	DP690-4	126.03	113.45			0.71154	0.80591	32.473	2	0	Median	57427000	33065000	24362000	305	2361	292	579;580	1371;1372;1373;1374;1375;1376	1375		6	9606
AEEDVEPECIMEK	1	0	Oxidation (M)	1593.6538	0.65383918	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	1	0	12.5	0.5												1	1				13.565	13.565	2	5.4124E-05	6761	DP690-13	128.51	105.6			0.7893	0.91698	NaN	1	0	Median	54801000	44770000	10030000	306	2361	292	581;582	1377;1378;1379;1380	1380	2796	4	9606
AEEGIAAGGVMDVNTALQEVLK	1	0	Acetyl (Protein N-term);Oxidation (M)	2272.1257	0.12567738	582	P25398	RPS12	40S ribosomal protein S12	yes	yes	1	1	0	16	0																1	25.78	25.78	2	0.00021864	20101	DP690-16	120.66	79.938			NaN	NaN	NaN	0	0	Median	0	0	0	307	582	293	583	1381	1381	770	1	9606
AEENTDQASPQEDYAGFER	0	1	Unmodified	2155.893	0.89303491	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								15.246	15.246	2	0.015059	8819	DP690-9	135.86	113.62			NaN	NaN	NaN	0	0	Median	0	0	0	308	2217	294	584	1382	1382		1	9606
AEEPVKSECTEEAEEGPAK	2	0	Unmodified	2088.9157	0.91574419	2512	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	0	0	1	7.33	3.77		1								2							10.794	10.794	3	3.1343E-11	3535	DP690-10	186.98	159.47			0.70344	0.73026	NaN	1	0	Median	2107900	997080	1110800	309	2512	295	585;586;587	1383;1384;1385;1386	1383		4	9606
AEFEQIVLGK	1	0	Unmodified	1132.6128	0.61282471	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	0	0	10	4						1								1			17.967	17.967	2	0.00044842	11616	DP690-6	120.15	84.859			0.83632	0.9559	9.2855	2	0	Median	197760000	106660000	91101000	310	1372	296	588;589	1387;1388;1389;1390;1391	1390		5	9606
AEFFQHLIEDR	0	1	Unmodified	1403.6834	0.68336389	328	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	6.5	3.5			1							1							17.872	17.872	3	0.008899	13696	DP690-10	70.488	55.111			0.97401	1.1581	6.8813	2	0	Median	67099000	30460000	36640000	311	328	297	590;591	1392;1393;1394	1392		3	9606
AEFGPPGPGAGSR	0	1	Unmodified	1198.5731	0.57308516	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	4	0				1													13.078	13.078	2	0.00028119	5975	DP690-4	115.23	83.298			0.61367	0.70503	NaN	1	0	Median	19893000	11748000	8144900	312	2116	298	592	1395;1396	1395		2	9606
AEFTSYKETASSR	1	1	Acetyl (Protein N-term)	1517.6998	0.69980182	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	1	0	1	11	0											1						14.95	14.95	2	0.051809	9307	DP690-11	68.536	33.815			NaN	NaN	NaN	0	0	Median	0	0	0	313	1573	299	593	1397	1397		1	9606
AEFTVETR	0	1	Unmodified	951.46616	0.46616048	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1															13.23	13.23	2	0.054095	5615	DP690-2	113.5	44.116			1.0192	1.0644	NaN	1	0	Median	13827000	6714400	7112700	314	549	300	594	1398	1398		0	9606
AEFVEVTK	1	0	Unmodified	921.48075	0.48074791	37	CON__P02769			yes	yes	0	0	0	2.5	1.12	1	1	1	1													13.366	13.366	2	7.317E-11	5135	DP690-1	191.63	102.26		+	0.81847	0.86943	NaN	1	0	Median	233210000	200590000	32620000	315	37	301	595;596;597;598	1399;1400;1401;1402;1403;1404;1405;1406	1400		7	
AEGDSAGTAGTPGGTPAGDK	1	0	Unmodified	1715.7598	0.75983589	1797	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	0	0	12.7	0.471												1	2				10.456	10.456	2	1.4803E-44	2823	DP690-12	316.12	292.74			0.94669	1.0895	24.682	2	0	Median	110170000	65819000	44352000	316	1797	302	599;600;601	1407;1408;1409;1410;1411;1412	1407		6	9606
AEGDVAALNR	0	1	Unmodified	1014.5094	0.50942227	1028	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	0	15	0															1		11.979	11.979	2	9.005E-05	4688	DP690-15	155.1	112.99			0.78114	0.88262	NaN	1	0	Median	55989000	31099000	24890000	317	1028	303	602	1413;1414	1413		2	9606
AEGGGGGGRPGAPAAGDGKTEQK	2	1	Unmodified	2023.9671	0.96714333	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	10	0										1							10.045	10.045	4	0.061699	2406	DP690-10	46.953	46.953			0.60693	0.69257	NaN	1	0	Median	1244900	586730	658190	318	1078	304	603	1415;1416;1417	1416		3	9606
AEGPEVDVNLPK	1	0	Unmodified	1266.6456	0.6455814	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	10	0.577									1	4	1						15.677	15.677	2	4.5933E-05	9292	DP690-9	182.64	136.18			0.69188	0.76013	17.685	2	0	Median	944360000	258160000	686200000	319	1145	305	604;605;606;607;608;609	1418;1419;1420;1421;1422;1423;1424;1425;1426;1427;1428;1429;1430	1427		13	9606
AEGSAVSDPQHAAR	0	1	Acetyl (Protein N-term)	1436.6644	0.66441937	2100	Q9H2C0	GAN	Gigaxonin	yes	yes	1	0	0	4	0				2													11.497	11.497	2	0.00056932	4039	DP690-4	133.07	97.801			NaN	NaN	NaN	0	0	Median	1277500	0	1277500	320	2100	306	610;611	1431;1432;1433	1431		3	9606
AEGSDVANAVLDGADCIMLSGETAK	1	0	Oxidation (M)	2509.1312	0.13123305	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	1	0	4	0				1													20.336	20.336	2	2.972E-22	15064	DP690-4	183.88	174.56			0.94679	1.0143	NaN	1	0	Median	3820200	1921300	1898900	321	488	307	612	1434;1435;1436;1437	1435	607	4	9606
AEGSSTASSGSQLAEGK	1	0	Unmodified	1565.7169	0.71690845	2271	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	5.67	3.77			2								1						10.777	10.777	2	3.5709E-23	3209	DP690-11	262.11	224.4			0.93692	1.1373	NaN	1	0	Median	78349000	41877000	36472000	322	2271	308	613;614;615	1438;1439;1440;1441;1442;1443	1438		6	9606
AEGTVFTEEDFQK	1	0	Unmodified	1499.678	0.67800374	1583	Q86WX3	RPS19BP1	Active regulator of SIRT1	yes	yes	0	0	0	16	0																1	16.35	16.35	2	9.0925E-05	10319	DP690-16	172.56	106.5			0.76402	0.89441	NaN	1	0	Median	14849000	7963800	6885300	323	1583	309	616	1444;1445;1446;1447	1447		4	9606
AEGTVNEGRPESDAADHTGPK	1	1	Unmodified	2136.9672	0.96720291	1841	Q96EH3	MALSU1	Mitochondrial assembly of ribosomal large subunit protein 1	yes	yes	0	0	1	15	0															2		10.251	10.251	3;4	5.492E-10	2598	DP690-15	149.24	113.75			0.64637	0.73575	6.3798	2	0	Median	149110000	89439000	59668000	324	1841	310	617;618	1448;1449;1450;1451;1452;1453;1454	1452		7	9606
AEHASSLLELASTTK	1	0	Unmodified	1556.8046	0.80460124	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	2	0		1															15.999	15.999	3	0.0021862	8944	DP690-2	75.02	54.435			1.1333	1.1358	NaN	1	0	Median	4548200	2280600	2267500	325	1437	311	619	1455;1456;1457	1456		3	9606
AEHDQLLLNYAK	1	0	Unmodified	1413.7252	0.72522871	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					14.969	14.969	3	0.056511	8870	DP690-12	46.159	17.982			0.68842	0.80914	NaN	1	0	Median	89491000	47912000	41579000	326	544	312	620	1458	1458		1	9606
AEIAFEDRK	1	1	Unmodified	1077.5455	0.54547343	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	6	4		1								1							11.554	11.554	2	0.0017055	3646	DP690-2	133.86	53.697			0.98576	1.0624	0.33332	2	0	Median	210740000	96644000	114090000	327	1270	313	621;622	1459;1460;1461;1462	1462		4	9606
AEIDLVCELAK	1	0	Unmodified	1259.6431	0.64313856	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											3						19.192	19.192	2	0.0020748	15397	DP690-11	133.23	51.633			NaN	NaN	NaN	0	0	Median	0	0	0	328	1504	314	623;624;625	1463;1464;1465	1463		3	9606
AEIIHHLADLLTDQRDEILLANK	1	1	Unmodified	2640.4235	0.42351438	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	1	11	0											1						20.279	20.279	4	1.2403E-10	16937	DP690-11	157.22	141.63			0.72828	0.83857	NaN	1	0	Median	124410000	67274000	57132000	329	891	315	626	1466	1466		1	9606
AEIIHHLADLLTDQRDEILLANKK	2	1	Unmodified	2768.5185	0.5184774	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	2	11	0											1						19.22	19.22	5	0.00017114	15435	DP690-11	108.12	92.359			0.8285	1.0022	NaN	1	0	Median	904780000	506380000	398400000	330	891	316	627	1467;1468;1469	1467		3	9606
AEISFEDR	0	1	Unmodified	965.44543	0.44542503	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.5	0.5									1	1							14.16	14.16	2	0.043702	7338	DP690-9	122.74	60.025			0.82111	0.95517	5.3635	2	0	Median	562840000	301470000	261370000	331	549	317	628;629	1470;1471	1471		0	9606
AEISFEDRK	1	1	Unmodified	1093.5404	0.54038805	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	8.88	2.67		1							2	4	1						11.649	11.649	2;3	1.3729E-09	3993	DP690-9	180.87	94.397			0.86399	1.0021	15.043	5	0	Median	1628099999.9999998	922030000	706060000	332	549	318	630;631;632;633;634;635;636;637	1472;1473;1474;1475;1476;1477;1478;1479;1480;1481;1482;1483;1484;1485;1486;1487;1488;1489	1489		18	9606
AEITFDDHK	1	0	Unmodified	1074.4982	0.49818889	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	2	0		1															12.018	12.018	2	0.017068	4226	DP690-2	82.426	52.171			0.75827	0.75944	NaN	1	0	Median	4437000	2387300	2049700	333	250	319	638	1490;1491	1491		2	9606
AELDDTPMR	0	1	Oxidation (M)	1062.4652	0.4651742	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	0	11	0											1						11.034	11.034	2	0.0087697	3564	DP690-11	98.629	58.983			0.77791	0.91317	NaN	1	0	Median	147560000	83960000	63595000	334	566	320	639	1492;1493	1492	744	2	9606
AELELELGR	0	1	Unmodified	1028.5502	0.55022446	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.8	0.4									1	4							17.004	17.004	2	2.5419E-05	11108	DP690-9	179.21	59.919			0.85166	0.97275	NaN	1	0	Median	85090000	46055000	39034000	335	1319	321	640;641;642;643;644	1494;1495;1496;1497;1498;1499;1500;1501	1500		8	9606
AELEQHLEQEQEFQVNK	1	0	Unmodified	2097.9967	0.99671212	1353	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	4	0				1													15.097	15.097	3	0.00050829	8716	DP690-4	88.951	72.337			1.1312	1.2361	NaN	1	0	Median	11819000	5531400	6287100	336	1353	322	645	1502	1502		1	9606
AELNEFLTR	0	1	Unmodified	1091.5611	0.56112349	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	11.8	3.83							1		1						1	1	17.121	17.121	2	9.1904E-05	11248	DP690-16	140.5	69			0.90104	0.91344	10.129	3	0	Plateau	1050799999.9999999	547840000	502970000	337	569	323	646;647;648;649	1503;1504;1505;1506;1507;1508;1509;1510;1511;1512;1513	1508		11	9606
AELNSTTEELHK	1	0	Unmodified	1370.6678	0.66777341	310	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	11	0											2						11.328	11.328	2;3	0.019228	3988	DP690-11	88.338	36.266			NaN	NaN	NaN	0	0	Median	0	0	0	338	310	324	650;651	1514;1515	1514		2	9606
AELQMLLEEEIPSGK	1	0	Acetyl (Protein N-term);Oxidation (M)	1743.8601	0.86006721	1636	Q8IZP0	ABI1	Abl interactor 1	yes	yes	1	1	0	12	0												1					25.388	25.388	2	0.015925	21872	DP690-12	77.185	46.792			NaN	NaN	NaN	0	0	Median	0	0	0	339	1636	325	652	1516	1516	2273	1	9606
AELQMLLEEEIPSGKR	1	1	Acetyl (Protein N-term);Oxidation (M)	1899.9612	0.96117824	1636	Q8IZP0	ABI1	Abl interactor 1	yes	yes	1	1	1	14	2												1				1	22.895	22.895	2	2.7404E-07	19335	DP690-12	143.42	117.41			1.0451	1.262	NaN	1	0	Median	3863000	1930600	1932500	340	1636	326	653;654	1517;1518;1519;1520;1521;1522	1518	2273	6	9606
AELQTALAHTQHAAR	0	1	Unmodified	1616.8383	0.83830141	1138	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	11	0											1						11.548	11.548	4	0.043279	4394	DP690-11	42.52	13.741			0.66544	0.79361	NaN	1	0	Median	39388000	20759000	18629000	341	1138	327	655	1523	1523		0	9606
AELSEEALLSVLPTIR	0	1	Acetyl (Protein N-term)	1781.9775	0.97748023	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	1	0	0	3	0			2														27.528	27.528	2	0.0071799	22323	DP690-3	100.19	47.632			NaN	NaN	NaN	0	0	Median	168270	168270	0	342	746	328	656;657	1524;1525	1524		2	9606
AELVAISSSEDEGNLR	0	1	Unmodified	1688.8217	0.82170787	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								16.205	16.205	2	3.8842E-07	10117	DP690-9	205.12	174.25			0.71876	0.90108	NaN	1	0	Median	7081100	4057700	3023500	343	2411	329	658	1526;1527;1528	1526		3	9606
AELVQLVSPFLGK	1	0	Unmodified	1399.8075	0.80750177	1927	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	10	0										1							22.09	22.09	2	0.0047358	19585	DP690-10	118.77	62.96			NaN	NaN	NaN	0	0	Median	15787000	0	15787000	344	1927	330	659	1529	1529		1	9606
AELYKEPTNEELNR	1	1	Unmodified	1704.8319	0.83187862	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	1	11	0											1						13.156	13.156	3	1.5932E-06	6600	DP690-11	182.37	156.14			0.7467	0.82728	NaN	1	0	Median	215850000	111610000	104240000	345	2127	331	660	1530;1531;1532;1533;1534	1531		5	9606
AEMEVLLASK	1	0	Oxidation (M)	1105.5689	0.56891099	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9	0									1								13.497	13.497	2	0.00042331	6457	DP690-9	125.71	72.927			0.94878	1.132	NaN	1	0	Median	43249000	20182000	23068000	346	1319	332	661	1535;1536;1537;1538	1535	2008	4	9606
AENEEAAACPAWER	0	1	Unmodified	1602.6733	0.67326949	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								14.003	14.003	2	1.3545E-05	7153	DP690-9	177.1	157.46			0.79084	0.98729	NaN	1	0	Median	14260000	8014900	6245100	347	1048	333	662	1539;1540;1541;1542	1541		4	9606
AENFFILR	0	1	Unmodified	1008.5393	0.53926584	917	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	0	0	16	0																1	19.021	19.021	2	0.045437	13718	DP690-16	132.09	67.291			0.83994	0.92044	NaN	1	0	Median	113410000	61456000	51951000	348	917	334	663	1543	1543		0	9606
AENHCELLSPAR	0	1	Acetyl (Protein N-term)	1437.6671	0.6670619	2257	Q9NXV2	KCTD5	BTB/POZ domain-containing protein KCTD5	yes	yes	1	0	0	15	0															1		14.509	14.509	2	0.012971	8054	DP690-15	75.739	31.969			1.0112	1.1713	NaN	1	0	Median	16285000	7145000	9140000	349	2257	335	664	1544;1545	1545		2	9606
AENNSEVGASGYGVPGPTWDR	0	1	Unmodified	2161.9665	0.96647463	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	10.5	0.5										1	1						17.022	17.022	2	7.185299999999999E-44	12417	DP690-10	270.99	199.43			0.70129	0.85723	42.213	2	0	Median	91812000	49012000	42800000	350	1137	336	665;666	1546;1547;1548;1549;1550;1551;1552;1553	1547		8	9606
AENPSLENHR	0	1	Acetyl (Protein N-term)	1207.5582	0.55816338	92	O00505	KPNA3	Importin subunit alpha-4	yes	yes	1	0	0	12	0												1					11.346	11.346	2	0.00088212	3924	DP690-12	115.71	88.411			0.90361	1.0738	NaN	1	0	Median	60966000	31256000	29710000	351	92	337	667	1554;1555	1555		2	9606
AENYDIPSADR	0	1	Unmodified	1249.5575	0.55749468	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														13.723	13.723	2	0.07411	6959	DP690-3	80.706	39.982			NaN	NaN	NaN	0	0	Median	0	0	0	352	561	338	668	1556	1556		1	9606
AEPEDHYFLLTEPPLNTPENR	0	1	Unmodified	2481.1812	0.18121843	940	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	13	0													2				18.847	18.847	3	5.3548E-10	13791	DP690-13	135.38	117.58			0.58855	0.69737	0.11745	2	0	Median	231440000	160690000	70746000	353	940	339	669;670	1557;1558;1559;1560;1561	1557		5	9606
AEPPKTHVTHHPLSDHEATLR	1	1	Unmodified	2372.1985	0.19854025	454	P10321	HLA-C	HLA class I histocompatibility antigen, Cw-7 alpha chain	yes	yes	0	0	1	14	0														1			10.235	10.235	5	3.9564E-05	2413	DP690-14	115.91	101.14			0.45623	0.57414	NaN	1	0	Median	29938000	19483000	10455000	354	454	340	671	1562;1563;1564;1565;1566	1563		5	9606
AEPYCSVLPGFTFIQHLPLSER	0	1	Unmodified	2560.2784	0.27843005	2012	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	11	0											1						22.272	22.272	3	0.00025441	19579	DP690-11	97.621	80.27			0.62834	0.75051	NaN	1	0	Median	30889000	20162000	10727000	355	2012	341	672	1567;1568;1569;1570	1567		4	9606
AEQINQAAGEASAVLAK	1	0	Unmodified	1669.8635	0.8635131	2365	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	14	0														1			16.599	16.599	2	1.9934E-13	11041	DP690-14	211.83	144.91			0.82002	0.99699	NaN	1	0	Median	49473000	26502000	22971000	356	2365	342	673	1571;1572;1573;1574	1572		4	9606
AEQLGAEGNVDESQK	1	0	Unmodified	1573.722	0.72199382	2185	Q9NQ29	LUC7L	Putative RNA-binding protein Luc7-like 1	yes	yes	0	0	0	11.5	3.2						1							2	1			11.762	11.762	2	5.5418E-05	4432	DP690-13	155.86	94.077			0.85643	1.009	NaN	1	0	Median	11061000	3575900	7484900	357	2185	343	674;675;676;677	1575;1576;1577;1578;1579;1580;1581;1582;1583	1577		9	9606
AEQMHQSFVAETSQR	0	1	Oxidation (M)	1763.7897	0.78969623	794	P49454	CENPF	Centromere protein F	yes	yes	0	1	0	9	0									1								10.757	10.757	3	0.012288	3118	DP690-9	61.649	44.964			1.025	1.2826	NaN	1	0	Median	4525200	2671400	1853800	358	794	344	678	1584	1584	1203	1	9606
AESCGSGNSTGYQIR	0	1	Unmodified	1585.6791	0.67908315	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	9.67	2.98			1								5						11.944	11.944	2	2.7833999999999997E-46	4849	DP690-11	250.72	170.74			0.84637	0.9428	NaN	1	0	Median	38640000	3011000	35629000	359	2105	345	679;680;681;682;683;684	1585;1586;1587;1588;1589;1590;1591;1592;1593;1594;1595;1596;1597	1585		13	9606
AESDLDYIQYR	0	1	Unmodified	1371.6307	0.63065962	1747	Q8WVK7	SKA2	Spindle and kinetochore-associated protein 2	yes	yes	0	0	0	16	0																1	16.799	16.799	2	1.5317E-06	10840	DP690-16	224.86	163.08			0.78447	0.91236	NaN	1	0	Median	18298000	9297000	9000700	360	1747	346	685	1598;1599;1600;1601	1599		4	9606
AESEEGPDVLR	0	1	Unmodified	1200.5622	0.5622457	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	7	4			1								1						13.423	13.423	2	0.00027226	6560	DP690-3	155.42	74.982			0.6946	0.80685	0.7344	2	0	Median	142880000	78563000	64315000	361	1333	347	686;687	1602;1603;1604	1603		3	9606
AESGDSLGSEDRDLLYSIDAYR	0	2	Unmodified	2431.1139	0.11392672	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	10.5	0.5										1	1						19.669	19.669	3	1.084E-07	16199	DP690-10	143.57	131.51			0.80544	0.97596	12.594	2	0	Median	393650000	215850000	177800000	362	2190	348	688;689	1605;1606;1607;1608	1605		4	9606
AESLIGVYPEQGDCVISK	1	0	Unmodified	1963.9561	0.95609286	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							18.109	18.109	2	6.1133E-10	13977	DP690-10	157.33	127.23			0.80904	0.95685	NaN	1	0	Median	265470000	144190000	121280000	363	1285	349	690	1609;1610;1611;1612	1610		4	9606
AESPEEVACR	0	1	Unmodified	1146.4975	0.49753696	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															11.248	11.248	2	0.00017746	3448	DP690-2	131.06	99.988			1.0942	1.1446	NaN	1	0	Median	5448400	2685900	2762500	364	1555	350	691	1613;1614;1615;1616	1614		4	9606
AETDHLFDLSR	0	1	Unmodified	1302.6204	0.62042929	2182	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	12	0												1					16.304	16.304	3	0.0036865	10828	DP690-12	76.927	46.103			0.76255	0.90358	NaN	1	0	Median	42007000	26146000	15861000	365	2182	351	692	1617;1618	1618		2	9606
AETECQNAEYQQLLDIK	1	0	Unmodified	2051.947	0.94698474	30	CON__P02535-1			yes	yes	0	0	0	4	0				1													18.601	18.601	2	1.3947E-26	13054	DP690-4	222.73	185.11		+	NaN	NaN	NaN	0	0	Median	2837300	2837300	0	366	30	352	693	1619;1620	1619		2	
AETECQNTEYQQLLDIK	1	0	Unmodified	2081.9575	0.95754942	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	5.4	4.41	2			1					1			1					18.646	18.646	2	9.9023E-155	13078	DP690-4	355.81	285.08		+	NaN	NaN	NaN	0	0	Median	24221000	24221000	0	367	42	353	694;695;696;697;698	1621;1622;1623;1624;1625;1626;1627	1626		7	9606
AETEEAEEPEEDGEEHVCVSASK	1	0	Unmodified	2560.0395	0.039500731	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	9.67	0.471									1	2							13.062	13.062	3	2.5595E-05	6712	DP690-10	138.28	118.41			0.89719	1.1136	2.6102	2	0	Median	40896000	25818000	15078000	368	763	354	699;700;701	1628;1629;1630;1631;1632;1633;1634	1631		7	9606
AETEEGPDVLR	0	1	Unmodified	1214.5779	0.57789577	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	11	0											2						13.638	13.638	2	2.7594E-06	7398	DP690-11	203.29	144.47			0.89748	1.0341	NaN	1	0	Median	187750000	99484000	88265000	369	1332	355	702;703	1635;1636	1635		2	9606
AETEKPANQKEPTTCHTVK	3	0	Unmodified	2168.0532	0.053181143	2485	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	2	11	0											1						9.8419	9.8419	4	0.016054	2097	DP690-11	60.542	44.261			0.72596	0.78634	NaN	1	0	Median	2283500	1116600	1167000	370	2485	356	704	1637	1637		1	9606
AETLAGAMPNEAGGHPDAR	0	1	Oxidation (M)	1879.8483	0.84827374	2511	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	1	0	3	0			1														11.075	11.075	3	0.021383	3547	DP690-3	76.586	53.513			NaN	NaN	NaN	0	0	Median	3379200	0	3379200	371	2511	357	705	1638	1638	2943	1	9606
AETLASSLQEDLAHTR	0	1	Unmodified	1740.8642	0.86424139	1466	Q69YQ0	SPECC1L	Cytospin-A	yes	yes	0	0	0	11	0											1						17.76	17.76	3	0.0031322	13449	DP690-11	101.01	61.047			NaN	NaN	NaN	0	0	Median	30928000	0	30928000	372	1466	358	706	1639	1639		1	9606
AETLMTVTDPVHDIAFAPNLGR	0	1	Unmodified	2367.1893	0.18928069	1840	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	14	0														1			20.408	20.408	3	3.3394E-15	16188	DP690-14	164.59	146.84			0.75051	0.90743	NaN	1	0	Median	54407000	32560000	21847000	373	1840	359	707	1640;1641	1641		2	9606
AETNDSYHIILK	1	0	Unmodified	1402.7092	0.70924429	1160	Q12800	TFCP2	Alpha-globin transcription factor CP2	yes	yes	0	0	0	12	0												2					14.15	14.15	2;3	0.0040491	7839	DP690-12	97.163	61.452			1.1488	1.3353	30.485	2	0	Median	203180000	95444000	107730000	374	1160	360	708;709	1642;1643;1644;1645;1646	1646		5	9606
AEVDMDTDAPQVSHKPGGEPK	2	0	Oxidation (M)	2223.0114	0.011375907	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	1	9	0									1								10.441	10.441	4	0.01468	2707	DP690-9	83.891	83.891			0.81386	0.98343	NaN	1	0	Median	8641000	5001300	3639700	375	1264	361	710	1647	1647	1903	0	9606
AEVKFEGDTLVNR	1	1	Unmodified	1476.7573	0.75725712	57	CON__Q9U6Y5			yes	yes	0	0	1	6.39	2.52	2	2	2	1	20	6	30	2	1	1			1	1	2		19.455	19.455	2;3	9.8385E-45	7277	DP690-7	250.26	181.64		+	2.2783	2.7248	201.28	18	0	Median	82512000000	76136000000	6376599999.999999	376	57	362	711;712;713;714;715;716;717;718;719;720;721;722;723;724;725;726;727;728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745;746;747;748;749;750;751;752;753;754;755;756;757;758;759;760;761;762;763;764;765;766;767;768;769;770;771;772;773;774;775;776;777;778;779;780;781	1648;1649;1650;1651;1652;1653;1654;1655;1656;1657;1658;1659;1660;1661;1662;1663;1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;1677;1678;1679;1680;1681;1682;1683;1684;1685;1686;1687;1688;1689;1690;1691;1692;1693;1694;1695;1696;1697;1698;1699;1700;1701;1702;1703;1704;1705;1706;1707;1708;1709;1710;1711;1712;1713;1714;1715;1716;1717;1718;1719;1720;1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;1736;1737;1738;1739;1740;1741;1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753;1754;1755;1756;1757;1758;1759;1760;1761;1762;1763;1764;1765;1766;1767;1768;1769;1770;1771;1772;1773;1774;1775;1776;1777;1778;1779;1780;1781;1782;1783;1784;1785;1786;1787;1788	1738		141	
AEVKFEGDTLVNRIELK	2	1	Unmodified	1960.0629	0.062941193	57	CON__Q9U6Y5			yes	yes	0	0	2	7.33	0.471							2	1									16.788	16.788	3;4	5.0376E-12	10528	DP690-7	178.47	133.09		+	0.19924	0.21226	196.82	2	0	Median	279920000	266100000	13825000	377	57	363	782;783;784	1789;1790;1791;1792;1793;1794;1795;1796;1797	1795		9	
AEVLSEEPILK	1	0	Unmodified	1226.6758	0.6758189	1526	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	13	0													1				16.44	16.44	2	9.8828E-05	10731	DP690-13	131.62	76.504			0.76174	0.88679	NaN	1	0	Median	27998000	16848000	11150000	378	1526	364	785	1798;1799	1798		2	9606
AEVLSFILEDVR	0	1	Unmodified	1389.7504	0.75038083	1791	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	10	0										1							22.557	22.557	2	0.0011124	20159	DP690-10	104.22	64.917			0.74713	0.93244	NaN	1	0	Median	17895000	10594000	7300600	379	1791	365	786	1800;1801;1802;1803	1801		4	9606
AEVLSPVVSVFVPPR	0	1	Unmodified	1594.9083	0.90827845	46	CON__Q1RMK2			yes	yes	0	0	0	2	0		1															20.883	20.883	2	0.023483	14516	DP690-2	91.313	53.757		+	NaN	NaN	NaN	0	0	Median	909850	909850	0	380	46	366	787	1804	1804		1	
AEVQNLGGELVVSGVDSAMSLIQAAK	1	0	Unmodified	2585.3371	0.33706714	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											2						26.505	26.505	2	8.9143E-23	24559	DP690-11	184.32	184.32			0.6468	0.7558	NaN	1	0	Median	2237700	1385700	851980	381	657	367	788;789	1805;1806;1807;1808;1809	1808		5	9606
AEVVETTQVYTEEETR	0	1	Unmodified	1882.8796	0.87961668	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							15.111	15.111	2	1.1542E-17	9723	DP690-10	196.15	130.91			0.90846	1.136	NaN	1	0	Median	25242000	4716500	20525000	382	1319	368	790;791	1810;1811;1812;1813;1814	1810		5	9606
AEVVETTQVYTEEETRR	0	2	Unmodified	2038.9807	0.98072771	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	3.12		1							2	2	1	1	1				14.013	14.013	2;3	1.5277E-48	8024	DP690-10	339.53	298.13			0.85959	0.9505	15.943	7	0	Median	1397000000	721640000	675380000	383	1319	369	792;793;794;795;796;797;798;799	1815;1816;1817;1818;1819;1820;1821;1822;1823;1824;1825;1826;1827;1828;1829;1830;1831;1832;1833;1834;1835;1836;1837;1838;1839;1840	1816		26	9606
AEWQVYKEEISR	1	1	Unmodified	1536.7573	0.75725712	1069	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	1	15	0															2		15.416	15.416	2;3	0.00041958	9256	DP690-15	104.94	74.498			0.93337	1.0503	2.4417	2	0	Median	170470000	85246000	85220000	384	1069	370	800;801	1841;1842;1843;1844	1842		4	9606
AEYLASIFGTEK	1	0	Acetyl (Protein N-term)	1369.6765	0.67654718	1079	Q01081;Q8WU68	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	yes	no	1	0	0	12.5	1.86										3	1			6			26.339	26.339	2	8.7751E-09	22968	DP690-14	202.96	148.24			0.85961	0.98292	NaN	1	0	Median	2151300	1653400	497900	385	1079	371	802;803;804;805;806;807;808;809;810;811	1845;1846;1847;1848;1849;1850;1851;1852;1853;1854;1855;1856;1857	1853		13	9606
AEYLASIFGTEKDK	2	0	Acetyl (Protein N-term)	1612.7985	0.79845323	1079	Q01081;Q8WU68	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	yes	no	1	0	1	11.6	2.56						1					2	1	1	2			23.519	23.519	2	9.7052E-10	19831	DP690-14	202	125.83			1.1067	1.1905	29.39	4	0	Median	87939000	46299000	41640000	386	1079	372	812;813;814;815;816;817;818	1858;1859;1860;1861;1862;1863;1864;1865;1866;1867;1868;1869;1870	1864		13	9606
AEYWAVSSLTGENVR	0	1	Unmodified	1680.8107	0.81074925	2059	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	7	0							1										18.762	18.762	2	0.014748	13117	DP690-7	99.539	71.895			NaN	NaN	NaN	0	0	Median	3613100	0	3613100	387	2059	373	819	1871	1871		1	9606
AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR	0	1	Unmodified	3337.6368	0.63675464	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							17.355	17.355	3	3.2383E-13	12901	DP690-10	126.15	103.91			NaN	NaN	NaN	0	0	Median	46722000	46722000	0	388	1254	374	820	1872;1873;1874	1872		3	9606
AFAFVTFADDQIAQSLCGEDLIIK	1	0	Unmodified	2671.3204	0.32035445	1185	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	13	0													1				25.289	25.289	2	0.0007197	21604	DP690-13	101.2	85.804			0.87984	0.96416	NaN	1	0	Median	1960500	967350	993180	389	1185	375	821	1875;1876;1877	1877		3	9606
AFAHITGGGLLENIPR	0	1	Unmodified	1664.8998	0.89983903	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			2														17.908	17.908	2;3	6.9727E-08	12464	DP690-3	146.27	146.27			0.83294	0.90602	2.6695	2	0	Median	143620000	70983000	72641000	390	559	376	822;823	1878;1879;1880;1881;1882;1883	1880		6	9606
AFAMIIDKLEEDINSSMTNSTAASRPPVTLR	1	2	2 Oxidation (M)	3409.6858	0.68575502	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	2	2	8.25	3.34						2	1							1			20.941	20.941	3;4	8.9818E-07	15232	DP690-6	104.38	92.361			0.67402	0.82301	17.454	4	0	Median	126620000	69826000	56797000	391	1325	377	824;825;826;827	1884;1885;1886;1887;1888;1889;1890;1891	1888	2050;2051	8	9606
AFAMIIDKLEEDINSSMTNSTAASRPPVTLR	1	2	Oxidation (M)	3393.6908	0.6908404	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	1	2	14	0														1			21.1	21.1	4	0.0016951	17157	DP690-14	53.957	43.898			0.6001	0.69974	NaN	1	0	Median	43053000	22724000	20329000	392	1325	377	828	1892	1892	2050;2051	1	9606
AFAMIIDKLEEDISSSMTNSTAASRPPVTLR	1	2	2 Oxidation (M)	3382.6749	0.67485598	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	2	2	14	0														1			21.228	21.228	4	1.6537E-06	17153	DP690-14	84.674	65.183			0.70945	0.81813	NaN	1	0	Median	72194000	37968000	34226000	393	1326	378	829	1893	1893	2057;2058	1	9606
AFAMIIDKLEEDISSSMTNSTAASRPPVTLR	1	2	Oxidation (M)	3366.6799	0.67994136	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	1	2	14	0														1			21.458	21.458	4	2.3454E-05	17355	DP690-14	70.465	46.899			0.81021	0.95873	NaN	1	0	Median	21652000	11783000	9868300	394	1326	378	830	1894;1895;1896	1894	2057;2058	3	9606
AFAVGVQQVLLK	1	0	Unmodified	1271.7602	0.76015765	320	O95373	IPO7	Importin-7	yes	yes	0	0	0	3	0			1														18.788	18.788	2	7.8136E-05	13625	DP690-3	130.75	114.55			1.3993	1.5044	NaN	1	0	Median	17022000	7815300	9206400	395	320	379	831	1897;1898;1899;1900	1898		4	9606
AFCGFEDPR	0	1	Unmodified	1097.46	0.46002924	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							15.373	15.373	2	0.0028486	8992	DP690-9	108.46	92.307			0.78767	0.93519	10.259	2	0	Median	258090000	139000000	119080000	396	1319	380	832;833	1901;1902;1903;1904;1905;1906;1907;1908;1909	1907		9	9606
AFDCPETEYPVK	1	0	Unmodified	1454.6388	0.63878147	194	O43847	NRD1	Nardilysin	yes	yes	0	0	0	3	0			1														15.147	15.147	2	0.0077259	8800	DP690-3	78.655	62.692			0.78016	0.83327	NaN	1	0	Median	13683000	7833100	5850300	397	194	381	834	1910;1911	1911		2	9606
AFDHVLHLRPLSR	0	2	Unmodified	1559.8685	0.86847932	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	1	11	0											1						14.187	14.187	4	4.9663E-05	8188	DP690-11	120.77	120.77			1.1831	1.4584	NaN	1	0	Median	36601000	16820000	19781000	398	2127	382	835	1912;1913;1914;1915	1912		4	9606
AFDLFNPNFK	1	0	Unmodified	1211.5975	0.597509	2470	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	15	0															2		20.313	20.313	2	0.03335	15527	DP690-15	93.429	45.338			NaN	NaN	NaN	0	0	Median	0	0	0	399	2470	383	836;837	1916;1917	1916		2	9606
AFDSGIIPMEFVNK	1	0	Oxidation (M)	1582.7701	0.77012999	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	1	0	3	0			1														19.364	19.364	2	0.0043906	14335	DP690-3	89.403	64.061			0.78326	0.83755	NaN	1	0	Median	14223000	7777600	6445200	400	873	384	838	1918	1918	1318	1	9606
AFDTAGNGYCR	0	1	Unmodified	1230.5088	0.50877035	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															12.653	12.653	2	3.9805E-05	4870	DP690-2	182.53	169.16			0.89951	0.93656	NaN	1	0	Median	35927000	19467000	16460000	401	789	385	839	1919;1920;1921;1922;1923	1922		5	9606
AFEETQIDIPGGGSHGGSTMSLWEVMQSDLIPEEQR	0	1	2 Oxidation (M)	3962.7939	0.7938615	1319	Q15149	PLEC	Plectin	yes	yes	0	2	0	9	0									1								20.063	20.063	3	1.5304E-10	14940	DP690-9	84.183	64.957			0.68511	0.85902	NaN	1	0	Median	6687300	3482100	3205200	402	1319	386	840	1924;1925;1926	1926	2009;2010	3	9606
AFEETQIDIPGGGSHGGSTMSLWEVMQSDLIPEEQR	0	1	Oxidation (M)	3946.7989	0.79894688	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9	0									1								22.346	22.346	3	2.707E-10	17645	DP690-9	81.566	81.566			NaN	NaN	NaN	0	0	Median	2830400	2152700	677640	403	1319	386	841	1927;1928	1927	2009;2010	2	9606
AFEHLQQLELIKPMER	1	1	Oxidation (M)	1997.0404	0.040431612	196	O43929	ORC4	Origin recognition complex subunit 4	yes	yes	0	1	1	13	0													1				16.291	16.291	4	0.03766	10604	DP690-13	49.621	28.388		+	0.70206	0.82584	NaN	1	0	Median	54071000	26770000	27302000	404	196	387	842	1929	1929	208	1	9606
AFEVSENGNLVVSGK	1	0	Unmodified	1548.7784	0.77838649	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														16.488	16.488	2	1.252E-05	9524	DP690-2	162.68	162.68			0.82555	0.85273	0.87386	2	0	Median	23827000	12040000	11787000	405	789	388	843;844	1930;1931;1932;1933;1934	1932		5	9606
AFFPCFDTPAVK	1	0	Unmodified	1398.6642	0.66420836	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	4	0				1													19.672	19.672	2	0.056509	14327	DP690-4	85.533	47.977			NaN	NaN	NaN	0	0	Median	3674800	3674800	0	406	2116	389	845	1935	1935		1	9606
AFGEFNVQTAK	1	0	Unmodified	1210.5982	0.59823728	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	4	0				1													15.717	15.717	2	2.3951E-12	9419	DP690-4	193.1	143.68			NaN	NaN	NaN	0	0	Median	115640000	0	115640000	407	1784	390	846	1936;1937;1938	1936		3	9606
AFGFSHLEALLDDSK	1	0	Unmodified	1648.8097	0.80968662	1856	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	6	0						1											20.55	20.55	3	0.059711	14724	DP690-6	50.024	32.238			0.99831	1.1046	NaN	1	0	Median	2646600	1111600	1535000	408	1856	391	847	1939	1939		1	9606
AFGFSHLEALLDDSKELQR	1	1	Unmodified	2175.096	0.096032235	1856	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	1	6	0						1											20.152	20.152	4	0.00017961	14273	DP690-6	97.352	74.984			0.79293	0.88864	NaN	1	0	Median	6316100	4366200	1949900	409	1856	392	848	1940;1941	1941		2	9606
AFGPGLEGGLVNK	1	0	Unmodified	1257.6717	0.67173657	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							16.67	16.67	2	6.5948E-05	11938	DP690-10	174.86	142.11			0.97337	0.91454	15.528	3	0	Plateau	460390000	256540000	203850000	410	1270	393	849;850;851	1942;1943;1944;1945;1946;1947;1948;1949;1950;1951;1952;1953	1944		12	9606
AFGPGLEPTGCIVDKPAEFTIDAR	1	1	Unmodified	2560.2632	0.26317392	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	7.67	4.03		1								1	1						18.975	18.975	3	3.8739E-10	15240	DP690-10	148.64	125.84			0.77124	0.81954	6.1143	2	0	Median	312000000	189270000	122730000	411	1270	394	852;853;854	1954;1955;1956;1957;1958;1959;1960	1954		7	9606
AFGPGLQGGSAGSPAR	0	1	Unmodified	1428.711	0.71097563	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.8	3.8		1							1	1	1	1	1	1	1		13.7	13.7	2	7.7391E-09	7462	DP690-10	184.98	150.18			0.7256	0.88013	14.228	7	0	Median	3690299999.9999995	2114699999.9999998	1575599999.9999998	412	549	395	855;856;857;858;859;860;861;862	1961;1962;1963;1964;1965;1966;1967;1968;1969;1970;1971;1972;1973;1974;1975;1976;1977;1978;1979;1980;1981;1982;1983;1984	1962		24	9606
AFGYYGPLR	0	1	Unmodified	1042.5236	0.52361577	1064	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	15.5	0.5															1	1	16.868	16.868	2	0.00072608	11119	DP690-15	138.07	93.464			0.829	0.8962	6.9024	2	0	Median	419630000	233160000	186470000	413	1064	396	863;864	1985;1986;1987;1988;1989;1990;1991;1992	1985		8	9606
AFHNEAQVNPER	0	1	Unmodified	1410.664	0.66402543	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	6.67	3.77				2								1					10.487	10.487	2;3	6.169E-05	2833	DP690-4	142.12	126.09			1.0596	1.1643	41.384	2	0	Median	296160000	155760000	140400000	414	520	397	865;866;867	1993;1994;1995;1996;1997;1998;1999;2000	1997		8	9606
AFHPFIAGPYNR	0	1	Unmodified	1388.699	0.69895438	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							15.607	15.607	3	0.00046428	10404	DP690-10	82.831	57.394			0.63031	0.75683	NaN	1	0	Median	199200000	115840000	83361000	415	1071	398	868	2001;2002	2001		2	9606
AFITNIPFDVK	1	0	Unmodified	1263.6863	0.68632401	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11.5	0.5											1	1					20.026	20.026	2	4.0821E-05	16651	DP690-11	182.16	114.66			0.79307	0.90709	15.492	2	0	Median	347820000	192980000	154850000	416	849	399	869;870	2003;2004;2005;2006;2007;2008	2005		6	9606
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	1	0	Unmodified	2751.4596	0.45956554	385	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	10	4						1								1			21.396	21.396	2	2.9984E-35	17312	DP690-14	199.09	190.78			0.71036	0.82232	7.6346	2	0	Median	58796000	35567000	23229000	417	385	400	871;872	2009;2010;2011;2012;2013;2014;2015;2016;2017;2018;2019;2020	2009		12	9606
AFLDALQNQAEASSK	1	0	Unmodified	1591.7842	0.78420015	1171	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	4	0				1													18.112	18.112	2	0.016427	12542	DP690-4	97.957	46.865			NaN	NaN	NaN	0	0	Median	4310700	0	4310700	418	1171	401	873	2021	2021		1	9606
AFLDSLPDVK	1	0	Unmodified	1103.5863	0.58627561	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	11	0											1						18.79	18.79	2	0.0013295	14911	DP690-11	106.6	76.524			0.60592	0.73486	NaN	1	0	Median	73457000	42742000	30715000	419	149	402	874	2022;2023	2022		2	9606
AFLEENNLDYIIR	0	1	Unmodified	1608.8148	0.814772	870	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	4	0				1													20.389	20.389	2	0.00089599	15168	DP690-4	127.76	74.014			0.7804	0.9058	NaN	1	0	Median	6208700	3419700	2788900	420	870	403	875	2024;2025;2026	2024		3	9606
AFLFDVVSK	1	0	Unmodified	1024.5593	0.55933258	2160	Q9HB90;Q9NQL2	RRAGC;RRAGD	Ras-related GTP-binding protein C;Ras-related GTP-binding protein D	yes	no	0	0	0	13	0													1				19.828	19.828	2	0.052499	15116	DP690-13	66.692	32.954			0.8534	0.98945	NaN	1	0	Median	17816000	10469000	7347500	421	2160	404	876	2027;2028	2027		2	9606
AFLGQVLVR	0	1	Unmodified	1001.6022	0.60220045	614	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	14	0														1			17.864	17.864	2	0.00085785	12830	DP690-14	128.48	82.114			0.74856	0.90391	NaN	1	0	Median	59616000	34890000	24726000	422	614	405	877	2029	2029		1	9606
AFLLESLLK	1	0	Unmodified	1032.6219	0.62193284	1884	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	11	0											1						22.112	22.112	2	0.00069144	19382	DP690-11	191.63	106.27			0.79043	0.97268	NaN	1	0	Median	19037000	10004000	9033200	423	1884	406	878	2030;2031;2032;2033	2030		4	9606
AFLNAIMR	0	1	Unmodified	934.50586	0.50585722	1297	Q14839;Q8TDI0	CHD4;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5	yes	no	0	0	0	10	0										1							18.018	18.018	2	0.065972	13859	DP690-10	94.163	36.7			NaN	NaN	NaN	0	0	Median	0	0	0	424	1297	407	879	2034	2034		1	9606
AFLQGGQEATDIALLLR	0	1	Unmodified	1814.989	0.98904797	1263	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	3	0			1														22.426	22.426	2	0.017921	18035	DP690-3	95.417	68.668			NaN	NaN	NaN	0	0	Median	748160	0	748160	425	1263	408	880	2035;2036	2036		2	9606
AFMTADLPNELIELLEK	1	0	Oxidation (M)	1962.002	0.00198042	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	1	0	10	0.816									1	1	1						25.32	25.32	2	3.2514E-07	23428	DP690-10	161.87	140.62			0.75577	0.91621	4.187	3	0	Median	22160000	12782000	9377500	426	1075	409	881;882;883	2037;2038;2039;2040;2041;2042;2043;2044	2038	1674	8	9606
AFMTADLPNELIELLEK	1	0	Unmodified	1946.0071	0.0070657979	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	10.5	0.5										1	1						26.145	26.145	2	4.3306E-06	24384	DP690-10	132.79	112.36			0.89349	1.0631	13.95	2	0	Median	7294500	3697500	3597000	427	1075	409	884;885	2045;2046;2047;2048;2049;2050;2051	2048		7	9606
AFNDPFIQK	1	0	Unmodified	1078.5447	0.54474515	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														16.896	16.896	2	0.0016554	11215	DP690-3	118.74	54.176			1.0142	1.0712	NaN	1	0	Median	37984000	17101000	20883000	428	1778	410	886	2052;2053;2054;2055	2053		4	9606
AFNSSSFNSNTFLTR	0	1	Unmodified	1691.7903	0.79034816	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					18.094	18.094	2	3.5156E-18	13342	DP690-12	281.83	247.94			0.86397	0.98238	NaN	1	0	Median	171420000	89488000	81933000	429	750	411	887	2056;2057;2058;2059;2060	2060		5	9606
AFNSVDPTFDNSVPSK	1	0	Unmodified	1723.8053	0.80532952	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	11	0											1						16.552	16.552	2	0.00047953	11712	DP690-11	106.54	60.89			0.80982	0.97891	NaN	1	0	Median	57781000	34812000	22970000	430	1941	412	888	2061;2062;2063;2064	2062		4	9606
AFPNPYADYNK	1	0	Unmodified	1298.5932	0.5931519	191	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	6	0						1											15.938	15.938	2	0.003017	9195	DP690-6	92.051	71.748			0.70201	0.78397	NaN	1	0	Median	32107000	18727000	13381000	431	191	413	889	2065;2066	2065		2	9606
AFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLR	0	2	Unmodified	3833.8101	0.81012068	300	O94992	HEXIM1	Protein HEXIM1	yes	yes	0	0	1	13	0													1				17.445	17.445	3	0.0023283	12155	DP690-13	65.021	36.806			NaN	NaN	NaN	0	0	Median	8341100	8341100	0	432	300	414	890	2067	2067		1	9606
AFSIASSLLTHPSR	0	1	Unmodified	1485.794	0.79397698	2339	Q9UHB4	NDOR1	NADPH-dependent diflavin oxidoreductase 1	yes	yes	0	0	0	4	0				1													17.195	17.195	3	0.00068428	11423	DP690-4	72.681	48.266			0.77706	0.90353	NaN	1	0	Median	7601900	4123000	3478800	433	2339	415	891	2068;2069;2070	2068		3	9606
AFSITQGLLK	1	0	Unmodified	1076.623	0.62299547	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	3	0			1														18.616	18.616	2	0.00019914	13367	DP690-3	127.46	110.1			0.83184	0.88929	NaN	1	0	Median	23789000	13532000	10257000	434	134	416	892	2071;2072;2073;2074	2071		4	9606
AFSQFVRPLIAAK	1	1	Unmodified	1446.8347	0.83471958	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	1	10	0										1							17.181	17.181	3	0.0018134	12647	DP690-10	85.672	49.672			0.63608	0.77349	NaN	1	0	Median	128400000	83642000	44761000	435	1297	417	893	2075;2076	2075		2	9606
AFTATVYN	0	0	Unmodified	885.42323	0.42323303	2163	Q9HBM1	SPC25	Kinetochore protein Spc25	yes	yes	0	0	0	15	0															1		15.964	15.964	1	0.014412	10041	DP690-15	103.29	55.37			NaN	NaN	NaN	0	0	Median	0	0	0	436	2163	418	894	2077	2077		1	9606
AFTKPEEACSFILSADFPALVVK	2	0	Unmodified	2539.3032	0.30324782	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	4	1			1		1												21.749	21.749	3	0.00050865	17258	DP690-3	82.146	71.463			0.6941	0.71644	18.033	2	0	Median	31812000	20316000	11496000	437	559	419	895;896	2078;2079;2080;2081;2082	2078		5	9606
AFVAIGDYNGHVGLGVK	1	0	Unmodified	1715.8995	0.89950468	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	14	0														2			17.25	17.25	2;3	5.5963E-10	12023	DP690-14	190.57	165.25			0.92808	1.0885	8.9612	2	0	Median	366390000	189340000	177050000	438	502	420	897;898	2083;2084;2085;2086;2087;2088;2089;2090	2086		8	9606
AFVDFLSDEIKEER	1	1	Unmodified	1696.8308	0.83081599	1130	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	1	11	4							1								1		19.958	19.958	3	3.8686E-05	14532	DP690-7	145.81	124.46			0.90927	1.0197	7.9675	2	0	Median	17972000	9050900	8921400	439	1130	421	899;900	2091;2092;2093;2094;2095	2092		4	9606
AFVHWYVGEGMEEGEFSEAR	0	1	Oxidation (M)	2345.0059	0.005896599	1032;1521;1977;452;1033	P0DPH7;P0DPH8;P68363;Q71U36;Q9BQE3;P68366	TUBA1B;TUBA1A;TUBA1C;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain	no	no	0	1	0	9	4					2								2				17.683	17.683	2;3	2.8283E-10	11402	DP690-5	156	142.16			1.0702	1.165	3.8616	2	0	Median	887860000	443280000	444580000	440	452;1032;1521;1977;1033	422	901;902;903;904	2096;2097;2098;2099;2100;2101;2102;2103;2104;2105;2106;2107	2103	520	12	9606
AFVHWYVGEGMEEGEFSEAR	0	1	Unmodified	2329.011	0.010981977	1032;1521;1977;452;1033	P0DPH7;P0DPH8;P68363;Q71U36;Q9BQE3;P68366	TUBA1B;TUBA1A;TUBA1C;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain	no	no	0	0	0	9	4					1								1				18.814	18.814	3	0.00038186	12818	DP690-5	88.548	73.307			0.98293	1.0897	5.8082	2	0	Median	526550000	255080000	271470000	441	452;1032;1521;1977;1033	422	905;906	2108;2109	2109		1	9606
AFVSGLLIGQCSSQK	1	0	Unmodified	1593.8185	0.81847717	1429	Q5SWX8	ODR4	Protein odr-4 homolog	yes	yes	0	0	0	13	0													1				18.261	18.261	2	0.0067268	13166	DP690-13	107.09	71.133			NaN	NaN	NaN	0	0	Median	18903000	18903000	0	442	1429	423	907	2110	2110		1	9606
AFVSMVYSEEGAEDR	0	1	Oxidation (M)	1704.7301	0.73011567	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	1	0	10	0										1							15.591	15.591	2	2.3175E-05	10325	DP690-10	170.04	143.29			0.88934	1.1075	NaN	1	0	Median	76986000	45459000	31527000	443	1285	424	908	2111;2112;2113	2112	1969	3	9606
AFVSMVYSEEGAEDR	0	1	Unmodified	1688.7352	0.73520105	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							17.364	17.364	2	4.9008E-05	12991	DP690-10	125.36	102.88			0.91551	1.1453	NaN	1	0	Median	60241000	33590000	26651000	444	1285	424	909	2114;2115	2114		2	9606
AFYAELYHIISSNLEK	1	0	Unmodified	1896.9622	0.96216452	2384	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	7	0							2										22.45	22.45	2;3	5.5162E-26	17429	DP690-7	220.37	163.21			0.81785	0.88634	NaN	1	0	Median	31663000	13862000	17801000	445	2384	425	910;911	2116;2117;2118;2119;2120;2121	2120		6	9606
AFYMEEGVPYCER	0	1	Oxidation (M)	1665.6803	0.68032871	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	1	0	13	0													1				15.925	15.925	2	0.00032501	10094	DP690-13	119.22	111.86			0.87318	1.0717	NaN	1	0	Median	29079000	14501000	14577000	446	2194	426	912	2122;2123;2124	2124	2675	3	9606
AFYMEEGVPYCER	0	1	Unmodified	1649.6854	0.68541408	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	13	0													1				17.422	17.422	2	0.0016536	12070	DP690-13	95.483	83.32			1.0925	1.3474	NaN	1	0	Median	20593000	10766000	9827100	447	2194	426	913	2125;2126	2125		2	9606
AFYPEEISSMVLTK	1	0	Unmodified	1613.8011	0.80109577	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	8	4				1								1					20.899	20.899	2	0.005911	16928	DP690-12	78.903	78.903			1.1622	1.3143	26.66	2	0	Median	21638000	10396000	11242000	448	449	427	914;915	2127;2128;2129;2130	2127		4	9606
AFYPEEISSMVLTK	1	0	Oxidation (M)	1629.796	0.79601039	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	8	4				1								1					19.031	19.031	2	0.00039476	13375	DP690-4	115.29	92.958			1.5548	1.6809	NaN	1	0	Median	50242000	31947000	18296000	449	449	427	916;917	2131;2132;2133;2134;2135;2136;2137	2134	514	7	9606
AGAANSQLSTSQPSLR	0	1	Unmodified	1586.8012	0.8012472	1832	Q96C57	C12orf43	Uncharacterized protein C12orf43	yes	yes	0	0	0	14	0														1			12.966	12.966	2	4.3377E-05	6007	DP690-14	161.87	121.85			0.83936	1.0247	NaN	1	0	Median	17517000	9796000	7720700	450	1832	428	918	2138;2139	2138		2	9606
AGAGPGGPPQKPAPSSQR	1	1	Unmodified	1658.8489	0.84886609	2500	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	yes	yes	0	0	1	12	0												1					10.128	10.128	3	2.0603E-11	2335	DP690-12	166.3	138.33			0.58185	0.74224	NaN	1	0	Median	34354000	21633000	12721000	451	2500	429	919	2140;2141;2142;2143;2144	2143		5	9606
AGAGVPGEQPVDLNLPLEAPPISK	1	0	Unmodified	2368.2638	0.26382585	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	10	0										1							20.393	20.393	2	4.1056E-05	17277	DP690-10	118.19	53.364			NaN	NaN	NaN	0	0	Median	6866200	6866200	0	452	1602	430	920	2145;2146	2145		2	9606
AGAIAPCEVTVPAQNTGLGPEK	1	0	Unmodified	2179.0943	0.094317676	385	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	10	4						1								1			16.391	16.391	2	1.3004E-44	10757	DP690-14	278.82	259.62			0.71118	0.80656	2.8059	2	0	Median	254580000	143060000	111520000	453	385	431	921;922	2147;2148;2149;2150;2151;2152;2153;2154;2155	2148		9	9606
AGAISASGPELQGAGHSK	1	0	Unmodified	1636.8169	0.81689726	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.33	0.471									2	1							11.703	11.703	2;3	2.0994E-18	4178	DP690-9	203.05	177.32			0.7409	0.8675	31.336	3	0	Median	81908000	50630000	31279000	454	1145	432	923;924;925	2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166	2161		11	9606
AGALPEAIAALSR	0	1	Unmodified	1238.6983	0.69828568	1562	Q86SX3	C14orf80	Uncharacterized protein C14orf80	yes	yes	0	0	0	13	0													1				19.401	19.401	2	0.0079619	14648	DP690-13	84.687	56.915			0.75447	0.92824	NaN	1	0	Median	16678000	8543500	8134100	455	1562	433	926	2167	2167		1	9606
AGALQCSPSDAYTK	1	0	Unmodified	1467.6664	0.6663932	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															12.888	12.888	2	2.5271E-05	5259	DP690-2	138.76	112.64			0.97624	0.97062	NaN	1	0	Median	3444700	1613300	1831400	456	2482	434	927	2168;2169;2170	2169		3	9606
AGASIPSSGAASPR	0	1	Unmodified	1227.6208	0.62076364	2299	Q9P270	SLAIN2	SLAIN motif-containing protein 2	yes	yes	0	0	0	11.5	0.5											1	1					11.408	11.408	2	0.0015308	4191	DP690-11	93.442	73.301			0.83266	0.99847	3.6042	2	0	Median	62276000	37315000	24961000	457	2299	435	928;929	2171;2172;2173;2174;2175	2171		5	9606
AGAYDFPSPEWDTVTPEAK	1	0	Unmodified	2079.9426	0.94255129	1223;1224	Q13555;Q13554;Q9UQM7;Q13557	CAMK2G;CAMK2B;CAMK2A;CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit alpha;Calcium/calmodulin-dependent protein kinase type II subunit delta	no	no	0	0	0	12.5	0.5												1	1				19.567	19.567	2	1.9453E-09	15327	DP690-12	145.81	130.31			0.61326	0.73602	NaN	1	0	Median	38557000	18694000	19863000	458	1223;1224	436	930;931	2176;2177;2178;2179;2180;2181	2179		6	9606
AGDELAYNSSSACASSR	0	1	Unmodified	1744.7322	0.73224093	1590	Q86Y37	CACUL1	CDK2-associated and cullin domain-containing protein 1	yes	yes	0	0	0	6	0						1											12.896	12.896	2	2.3056E-07	5543	DP690-6	156	133.47			0.82532	0.92572	NaN	1	0	Median	2895500	1340100	1555400	459	1590	437	932	2182;2183;2184;2185	2185		4	9606
AGDLSAGFFMEELNTYR	0	1	Acetyl (Protein N-term);Oxidation (M)	1977.8778	0.87784254	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	1	1	0	12	0												1					24.36	24.36	2	1.3518E-06	20962	DP690-12	135.94	128.21			0.9194	1.1225	NaN	1	0	Median	2350700	1325000	1025700	460	538	438	933	2186;2187;2188;2189;2190	2189	687	5	9606
AGEAAELQDAEVESSAK	1	0	Unmodified	1703.785	0.78498801	2279	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	3	0			1														14.506	14.506	2	3.5322E-09	8005	DP690-3	203.88	141.72			0.92331	0.98986	NaN	1	0	Median	21340000	11002000	10338000	461	2279	439	934	2191;2192;2193;2194	2192		4	9606
AGEAGKLEEVMQELR	1	1	Unmodified	1658.8298	0.82977013	1980	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	1	12	0												1					18.918	18.918	3	0.0059732	14419	DP690-12	70.134	27.659			2.2802	2.7253	NaN	1	0	Median	78222000	23578000	54644000	462	1980	440	935	2195;2196;2197	2196		3	9606
AGEAPTENPAPPTQQSSAE	0	0	Unmodified	1880.8388	0.8388145	507	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	13	0													1				13.097	13.097	2	5.4025E-07	6072	DP690-13	158.52	120.28			NaN	NaN	NaN	0	0	Median	0	0	0	463	507	441	936	2198;2199;2200	2198		3	9606
AGEGTYALDSESCMEK	1	0	Oxidation (M)	1762.7026	0.70258029	94	O00541	PES1	Pescadillo homolog	yes	yes	0	1	0	12	0												1					13.35	13.35	2	0.0094416	6696	DP690-12	101.56	81.351			NaN	NaN	NaN	0	0	Median	7785900	0	7785900	464	94	442	937	2201	2201	102	1	9606
AGELTEDEVER	0	1	Unmodified	1246.5677	0.56772501	973	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	12	4								1								1	12.921	12.921	2	0.00020587	5733	DP690-16	167.12	125.7			0.96933	1.027	7.1793	2	0	Median	651230000	336500000	314740000	465	973	443	938;939	2202;2203;2204;2205;2206;2207;2208;2209	2202		8	9606
AGEPDGESLDEQPSSSSSK	1	0	Unmodified	1905.8076	0.80757395	2112	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	yes	yes	0	0	0	13.6	0.49													2	3			12.155	12.155	2	3.6947000000000003E-64	4874	DP690-14	291.75	252.17			0.71448	0.81975	NaN	1	0	Median	12278000	5675700	6602600	466	2112	444	940;941;942;943;944	2210;2211;2212;2213;2214;2215;2216	2215		7	9606
AGEPLGVTFR	0	1	Unmodified	1045.5556	0.55564418	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	12	0												1					16.046	16.046	2	0.0077621	10448	DP690-12	114.89	45.296			NaN	NaN	NaN	0	0	Median	24466000	0	24466000	467	2280	445	945	2217;2218	2218		2	9606
AGEVVPPAMYQFSQYVCQQTGLQIPQLPAPPK	1	0	Oxidation (M)	3557.7687	0.76869679	1452	Q5XKP0	QIL1	Protein QIL1	yes	yes	0	1	0	16	0																1	22.173	22.173	3	0.0050709	17075	DP690-16	61.112	41.514			NaN	NaN	NaN	0	0	Median	1529600	1529600	0	468	1452	446	946	2219	2219	2156	1	9606
AGFAGDDAPR	0	1	Unmodified	975.44101	0.44100836	926;1023;1029	P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;P63261;P68032;P68133;P63267;P62736	ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	7.57	4.98	1	1	1							1	1	1		1			11.606	11.606	2	0.00015687	4236	DP690-12	134.48	92.369			0.82024	0.93707	23.597	7	0	Median	871490000	477340000	394150000	469	926;1023;1029	447	947;948;949;950;951;952;953	2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240;2241;2242;2243;2244;2245;2246;2247;2248;2249;2250	2237		31	9606
AGGAAVVITEPEHTK	1	0	Unmodified	1478.7729	0.77290718	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	11.1	4.03				2	1				2			2	2	2	2	1	12.023	12.023	2;3	1.3218E-14	4752	DP690-12	245.13	214.73			0.79213	0.88551	14.182	11	0	Median	2525600000	1391900000	1133700000	470	2298	448	954;955;956;957;958;959;960;961;962;963;964;965;966;967	2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2265;2266;2267;2268;2269;2270;2271;2272;2273;2274;2275;2276;2277;2278;2279;2280;2281;2282;2283;2284;2285;2286;2287;2288;2289;2290;2291;2292;2293;2294	2254		44	9606
AGGAAVVITEPEHTKER	1	1	Unmodified	1763.9166	0.91661131	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	1	12.1	3.12				1					2		1	2	2	2	2	1	10.825	10.825	3;4	1.2716E-20	3300	DP690-12	230.57	196.25			0.81536	0.9271	10.308	13	0	Median	2183900000	1179100000	1004799999.9999999	471	2298	449	968;969;970;971;972;973;974;975;976;977;978;979;980	2295;2296;2297;2298;2299;2300;2301;2302;2303;2304;2305;2306;2307;2308;2309;2310;2311;2312;2313;2314;2315;2316;2317;2318;2319;2320;2321;2322;2323;2324;2325;2326;2327;2328;2329;2330;2331;2332;2333;2334;2335;2336;2337	2303		43	9606
AGGADAVQTVTGGLR	0	1	Unmodified	1371.7106	0.71064128	2099	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	0	0	12	0												1					15.781	15.781	2	1.7808E-05	10103	DP690-12	136.5	60.935			0.87486	1.0367	NaN	1	0	Median	41988000	20596000	21392000	472	2099	450	981	2338;2339	2339		2	9606
AGGDATDSSQTALDNK	1	0	Unmodified	1549.6856	0.68560832	236	O75122	CLASP2	CLIP-associating protein 2	yes	yes	0	0	0	10	0										1							10.986	10.986	2	5.1221E-24	3690	DP690-10	273.24	239.35			0.7787	0.95098	NaN	1	0	Median	25535000	14407000	11128000	473	236	451	982	2340;2341;2342;2343	2340		4	9606
AGGEAGVTLGQPHLSR	0	1	Acetyl (Protein N-term)	1590.8114	0.81141795	714	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	1	0	0	13	0													1				15.701	15.701	2	2.2331E-26	9682	DP690-13	217.46	161.74			NaN	NaN	NaN	0	0	Median	26168000	0	26168000	474	714	452	983	2344;2345	2345		2	9606
AGGFASALER	0	1	Unmodified	977.49304	0.49304393	2442	Q9Y2Q9	MRPS28	28S ribosomal protein S28, mitochondrial	yes	yes	0	0	0	16	0																1	14.852	14.852	2	0.00028276	8341	DP690-16	124.92	87.763			0.81382	0.92253	NaN	1	0	Median	44701000	24569000	20132000	475	2442	453	984	2346;2347	2347		2	9606
AGGFEIQEESK	1	0	Unmodified	1193.5564	0.55643205	1617	Q8IXQ6	PARP9	Poly [ADP-ribose] polymerase 9	yes	yes	0	0	0	11	0											1						13.672	13.672	2	0.05328	7431	DP690-11	86.882	59.744			NaN	NaN	NaN	0	0	Median	0	0	0	476	1617	454	985	2348	2348		1	9606
AGGGGGLGAGSPALSGGQGR	0	1	Unmodified	1582.7812	0.78118046	1474	Q6IQ22	RAB12	Ras-related protein Rab-12	yes	yes	0	0	0	15	0															1		13.069	13.069	2	0.00056372	6156	DP690-15	96.591	72.126			0.67108	0.77381	NaN	1	0	Median	7887200	4747200	3140000	477	1474	455	986	2349;2350;2351	2349		3	9606
AGGGPTLQCPPPSSPEK	1	0	Unmodified	1678.7985	0.79847001	1900	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	9.6	0.8									3	1	1						12.619	12.619	2	8.6861E-18	5922	DP690-10	220.37	197.79			0.60209	0.74429	23.916	3	0	Median	112560000	69765000	42790000	478	1900	456	987;988;989;990;991	2352;2353;2354;2355;2356;2357;2358;2359	2352		8	9606
AGGIETIANEFSDR	0	1	Unmodified	1478.7001	0.70013617	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														18.851	18.851	2	2.5184E-06	13691	DP690-3	187.42	145.71			1.6254	1.8067	NaN	1	0	Median	40735000	21441000	19294000	479	1778	457	992	2360;2361	2360		2	9606
AGGIETIANEYSDR	0	1	Unmodified	1494.6951	0.69505079	654	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	3	0			1														16.588	16.588	2	6.7715E-05	10790	DP690-3	145.23	106.51			1.5785	1.8	NaN	1	0	Median	12869000	5490100	7378700	480	654	458	993	2362;2363;2364;2365	2365		4	9606
AGGPLGLSIVGGSDHSSHPFGVQEPGVFISK	1	0	Unmodified	3032.5356	0.53558403	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							19.155	19.155	4	3.6267E-05	15539	DP690-10	64.422	52.371			0.4993	0.6164	NaN	1	0	Median	120760000	77760000	43002000	481	1254	459	994	2366;2367	2366		2	9606
AGGPPQVAGAQAACSEDR	0	1	Unmodified	1740.7849	0.78494521	2113	Q9H3R5	CENPH	Centromere protein H	yes	yes	0	0	0	14	0														4			12.28	12.28	2	3.072E-07	5112	DP690-14	175.21	132.97			NaN	NaN	NaN	0	0	Median	0	0	0	482	2113	460	995;996;997;998	2368;2369;2370;2371	2370		4	9606
AGGPTTPLSPTR	0	1	Unmodified	1153.6091	0.60913632	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					12.409	12.409	2	0.00015206	5281	DP690-12	163.38	121.1			0.59932	0.6762	NaN	1	0	Median	199900000	126280000	73622000	483	544	461	999	2372;2373;2374;2375	2375		4	9606
AGGSLCHILAAAYK	1	0	Unmodified	1430.734	0.73401926	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	10	0										1							16.33	16.33	3	7.9398E-05	11468	DP690-10	115.57	95.191			0.66997	0.81332	NaN	1	0	Median	187910000	96686000	91224000	484	1710	462	1000	2376;2377;2378;2379	2378		4	9606
AGIFQPHVR	0	1	Unmodified	1023.5614	0.56139826	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10	0										1							12.567	12.567	2	0.038271	5944	DP690-10	106.42	52.861			NaN	NaN	NaN	0	0	Median	0	0	0	485	272	463	1001	2380	2380		1	9606
AGIICQLNAR	0	1	Unmodified	1114.5917	0.59171211	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	11	0											1						14.935	14.935	2	0.0041129	9288	DP690-11	91.9	46.565			0.81862	0.98903	NaN	1	0	Median	101720000	52608000	49116000	486	651	464	1002	2381;2382	2382		2	9606
AGILTTLNAR	0	1	Unmodified	1028.5978	0.59784335	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	7	4			1								1						16.128	16.128	2	0.0073952	11130	DP690-11	87.308	87.308			1.0242	1.1961	12.648	2	0	Median	126410000	65699000	60707000	487	653	465	1003;1004	2383;2384;2385;2386	2383		4	9606
AGINQNMDAVTEELQAK	1	0	Oxidation (M)	1846.8731	0.87309151	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	1	0	9	0									1								15.493	15.493	2	0.00082637	9200	DP690-9	104.24	87.894			1.0143	1.2641	NaN	1	0	Median	4735200	2619800	2115300	488	2411	466	1005	2387;2388	2388	2831	2	9606
AGITTTLNSR	0	1	Unmodified	1032.5564	0.55637247	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	7.67	3.4			1						1		1						12.842	12.842	2	0.00013528	6327	DP690-11	138.06	93.685			0.80932	0.92905	8.5184	3	0	Median	611360000	317180000	294180000	489	652	467	1006;1007;1008	2389;2390;2391;2392;2393;2394;2395;2396;2397;2398	2391		10	9606
AGKDLVSSLTSGLLTIGDR	1	1	Unmodified	1902.0422	0.042205751	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	11	0											1						22.005	22.005	3	0.06186	19272	DP690-11	39.387	9.3041			0.79796	0.97408	NaN	1	0	Median	18879000	9799500	9080000	490	873	468	1009	2399	2399		1	9606
AGKFPSLLTHNENMVAK	2	0	Oxidation (M)	1871.9564	0.95636763	1004	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	1	15	0															1		13.326	13.326	4	0.028038	6492	DP690-15	51.76	28.233			0.85761	0.98218	NaN	1	0	Median	60282000	31130000	29152000	491	1004	469	1010	2400;2401;2402	2401	1525	3	9606
AGKPVICATQMLESMIK	2	0	2 Oxidation (M)	1907.9519	0.95187588	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	2	1	4	0				2													15.755	15.755	2;3	1.2235E-06	9493	DP690-4	132.4	101.51			0.89597	0.92866	12.936	2	0	Median	104910000	54213000	50696000	492	488	470	1011;1012	2403;2404;2405;2406;2407;2408	2405	608;609	6	9606
AGLAMPGPPLGPVLGQR	0	1	Oxidation (M)	1645.8974	0.89739619	2463	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	1	0	15	0															1		17.925	17.925	2	0.047338	12724	DP690-15	82.831	33.832			NaN	NaN	NaN	0	0	Median	4528400	4528400	0	493	2463	471	1013	2409	2409		1	9606
AGLAPLEVR	0	1	Unmodified	924.53927	0.53926584	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	9.5	0.5									1	1							15.383	15.383	2	0.001342	10003	DP690-10	122.18	79.307			0.68837	0.82483	6.2994	2	0	Median	363120000	196020000	167100000	494	250	472	1014;1015	2410;2411;2412;2413;2414;2415	2411		6	9606
AGLELLSDQGYR	0	1	Acetyl (Protein N-term)	1362.6779	0.67794416	2180	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	1	0	0	15	0															1		22.206	22.206	1	9.8753E-05	17602	DP690-15	57.96	32.021			0.801	0.92772	NaN	1	0	Median	801860	442190	359670	495	2180	473	1016	2416	2416		1	9606
AGLESGAEPGDGDSDTTK	1	0	Unmodified	1705.7279	0.72786706	227	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	12	0												3					11.923	11.923	2	0.00013411	4704	DP690-12	159.5	106.42			NaN	NaN	NaN	0	0	Median	0	0	0	496	227	474	1017;1018;1019	2417;2418;2419	2418		3	9606
AGLESSEGGGGPERPGAR	0	2	Unmodified	1682.7972	0.79722445	1560	Q86SK9	SCD5	Stearoyl-CoA desaturase 5	yes	yes	0	0	1	9	0									1								10.502	10.502	3	0.00027913	2788	DP690-9	95.57	60.366			0.54538	0.59117	NaN	1	0	Median	7150400	4620800	2529600	497	1560	475	1020	2420	2420		1	9606
AGLGSGLSLSGLVHPELSR	0	1	Unmodified	1849.0058	0.005760665	800	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1													19.192	19.192	3	0.00029902	13786	DP690-4	91.518	73.428			0.79575	0.9273	NaN	1	0	Median	12347000	6567500	5779800	498	800	476	1021	2421;2422;2423	2421		3	9606
AGLLHNILPSQSTDLHHSVGTELLSLVYK	1	0	Unmodified	3141.6822	0.68224827	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.33	0.471									2	1							20.65	20.65	4;5	1.5998E-08	15686	DP690-9	135.66	135.66			0.75583	0.93277	8.8897	3	0	Median	261800000	143950000	117850000	499	1046	477	1022;1023;1024	2424;2425;2426;2427;2428;2429;2430;2431;2432;2433;2434;2435	2435		12	9606
AGLNCSTENMPIK	1	0	Unmodified	1433.6643	0.66428471	382	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	10	4						1								1			14.214	14.214	2	9.5458E-05	7843	DP690-14	136.96	109.63			0.94938	1.1362	NaN	1	0	Median	20893000	13019000	7874600	500	382	478	1025;1026	2436;2437;2438	2436		3	9606
AGLQFPVGR	0	1	Unmodified	943.52395	0.52395013	442;1370;378;441	Q71UI9;P0C0S5;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13;Q93077;Q7L7L0;P04908	H2AFV;H2AFZ;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3;HIST1H2AC;HIST3H2A;HIST1H2AB	Histone H2A.V;Histone H2A.Z;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E	no	no	0	0	0	13.8	3.34								1							1	2	16.894	16.894	2	0.00062599	9963	DP690-16	145.04	86.877			0.86892	0.90071	14.873	4	0	Median	3971399999.9999995	2072599999.9999998	1898799999.9999998	501	441;442;1370;378	479	1027;1028;1029;1030	2439;2440;2441;2442;2443;2444;2445;2446;2447;2448;2449;2450;2451	2445		13	9606
AGLVDDFEK	1	0	Unmodified	992.48148	0.48147619	282	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	15	0															1		16.164	16.164	2	0.030505	10204	DP690-15	95.815	32.509			NaN	NaN	NaN	0	0	Median	79343000	79343000	0	502	282	480	1031	2452;2453	2452		2	9606
AGLVDDFEKK	2	0	Unmodified	1120.5764	0.57643921	282	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	1	15.3	0.471															2	1	14.183	14.183	2;3	0.00014772	7640	DP690-15	166.3	114.96			0.84823	0.95991	1.7014	2	0	Median	140620000	70892000	69730000	503	282	481	1032;1033;1034	2454;2455;2456;2457;2458;2459;2460;2461;2462	2456		9	9606
AGLVELLLR	0	1	Unmodified	982.61752	0.61751616	1208	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	12	0												1					21.465	21.465	2	0.0016161	17742	DP690-12	119.17	33.908			0.87305	1.0426	NaN	1	0	Median	29926000	17094000	12832000	504	1208	482	1035	2463;2464;2465;2466	2466		4	9606
AGLVGPEFHEK	1	0	Unmodified	1182.6033	0.60332266	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	3.42		1							2	1	1		1				13.003	13.003	2;3	2.7452E-05	5742	DP690-9	128.81	76.315			0.9437	1.1205	35.085	5	0	Median	203690000	112770000	90925000	505	1319	483	1036;1037;1038;1039;1040;1041	2467;2468;2469;2470;2471;2472;2473;2474;2475;2476;2477;2478;2479;2480	2476		14	9606
AGMAAVASPTGNCDLER	0	1	Oxidation (M)	1734.7665	0.76651795	1487	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	yes	yes	0	1	0	10.4	1.36									2	1		2					13.034	13.034	2	7.153E-05	6232	DP690-12	145.83	114.94			NaN	NaN	NaN	0	0	Median	4960800	4960800	0	506	1487	484	1042;1043;1044;1045;1046	2481;2482;2483;2484;2485;2486	2482	2173	6	9606
AGNELLESSAGDDASSLR	0	1	Unmodified	1790.8282	0.82824981	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								16.055	16.055	2	2.6062E-10	9990	DP690-9	160.18	144.05			0.74179	0.92932	NaN	1	0	Median	7719800	4293300	3426500	507	2411	485	1047	2487;2488;2489;2490	2488		4	9606
AGNLGGGVVTIER	0	1	Unmodified	1241.6728	0.67279921	665	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	10.7	3.77								2								1	14.887	14.887	2	0.00013081	8404	DP690-16	152.69	111.26			0.95946	1.013	NaN	1	0	Median	327830000	167110000	160710000	508	665	486	1048;1049;1050	2491;2492;2493;2494;2495;2496;2497;2498	2492		8	9606
AGNNMLLVGVHGPR	0	1	Oxidation (M)	1449.7511	0.7510663	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	10.3	3.8		1							2	3		1			1	1	13.502	13.502	2;3	8.4341E-05	7026	DP690-10	145.46	128.02			0.75137	0.88071	8.4675	8	0	Median	2204800000	1255100000	949740000	509	549	487	1051;1052;1053;1054;1055;1056;1057;1058;1059	2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514;2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526;2527;2528	2505	702	30	9606
AGNNMLLVGVHGPR	0	1	Unmodified	1433.7562	0.75615168	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.5	0.5										2	2						14.771	14.771	2;3	5.4755E-05	9190	DP690-10	144.65	144.65			0.85038	0.73916	33.31	4	0	Linear	1646599999.9999998	897660000	748980000	510	549	487	1060;1061;1062;1063	2529;2530;2531;2532;2533;2534;2535;2536;2537;2538;2539;2540;2541;2542;2543	2536		15	9606
AGPAHAGHTAPMRPSYSAQEGLAGYQR	0	2	Unmodified	2780.3201	0.32012872	2162	Q9HBL0	TNS1	Tensin-1	yes	yes	0	0	1	10	0										1							12.435	12.435	4	0.019053	5734	DP690-10	39.767	21.469			0.71055	0.8463	NaN	1	0	Median	31838000	19377000	12461000	511	2162	488	1064	2544	2544		1	9606
AGPAHAGHTAPMRPSYSAQEGLAGYQR	0	2	Oxidation (M)	2796.315	0.31504334	2162	Q9HBL0	TNS1	Tensin-1	yes	yes	0	1	1	10	0										1							11.883	11.883	4	0.010385	5004	DP690-10	65.207	46.804			NaN	NaN	NaN	0	0	Median	24849000	24849000	0	512	2162	488	1065	2545;2546	2545	2650	2	9606
AGPESDAQYQFTGIK	1	0	Unmodified	1610.7577	0.75765105	1878	Q96IX5	USMG5	Up-regulated during skeletal muscle growth protein 5	yes	yes	0	0	0	16	0																1	16.2	16.2	2	1.6178E-15	10076	DP690-16	250.51	225.67			0.75099	0.87776	NaN	1	0	Median	22836000	11238000	11598000	513	1878	489	1066	2547;2548;2549;2550;2551	2547		5	9606
AGPESDAQYQFTGIKK	2	0	Unmodified	1738.8526	0.85261407	1878	Q96IX5	USMG5	Up-regulated during skeletal muscle growth protein 5	yes	yes	0	0	1	16	0																1	13.979	13.979	3	0.00030452	7185	DP690-16	113.52	88.496			0.71523	0.80762	NaN	1	0	Median	35730000	18247000	17482000	514	1878	490	1067	2552;2553	2552		2	9606
AGPGSEELTVTNAR	0	1	Unmodified	1400.6896	0.68957148	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11.5	0.5											1	1					13.51	13.51	2	6.1371E-07	6860	DP690-12	163.9	83.912			0.59071	0.71199	NaN	1	0	Median	121150000	68137000	53009000	515	2024	491	1068;1069	2554;2555;2556;2557;2558;2559;2560;2561	2561		8	9606
AGPGSSPLFSLLPGYR	0	1	Unmodified	1617.8515	0.85149185	2093	Q9H0W8	SMG9	Protein SMG9	yes	yes	0	0	0	12	0												1					22.003	22.003	2	0.0019151	18320	DP690-12	88.187	58.419			0.71339	0.87436	NaN	1	0	Median	3992400	2300100	1692300	516	2093	492	1070	2562	2562		1	9606
AGPGTLSVTIEGPSK	1	0	Unmodified	1412.7511	0.75110911	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							15.811	15.811	2	1.438E-05	10728	DP690-10	155.99	126.25			0.70587	0.82894	NaN	1	0	Median	291570000	175170000	116400000	517	250	493	1071	2563;2564;2565;2566;2567	2567		5	9606
AGQCVIGLQMGTNK	1	0	Oxidation (M)	1491.7174	0.71738291	1934	Q99439	CNN2	Calponin-2	yes	yes	0	1	0	11.3	3.77						1								2			13.529	13.529	2	0.00037553	6283	DP690-6	115.91	92.77			0.9923	1.1113	NaN	1	0	Median	39875000	24715000	15159000	518	1934	494	1072;1073;1074	2568;2569;2570;2571;2572;2573;2574	2574	2462	7	9606
AGQCVIGLQMGTNK	1	0	Unmodified	1475.7225	0.72246829	1934	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	6	0						1											15.706	15.706	2	0.00020945	8940	DP690-6	116.84	93.459			0.79427	0.90609	NaN	1	0	Median	8189900	5065200	3124700	519	1934	494	1075	2575;2576;2577	2576		3	9606
AGQGNVGLALLWSEK	1	0	Unmodified	1541.8202	0.82019173	1436	Q5T440	IBA57	Putative transferase CAF17, mitochondrial	yes	yes	0	0	0	14	0														1			20.285	20.285	2	0.003318	16019	DP690-14	84.169	65.202			0.78775	0.95168	NaN	1	0	Median	29620000	17474000	12145000	520	1436	495	1076	2578	2578		1	9606
AGQPHSSSDAAQAPAEQPHSSSDAAQAPCPR	0	1	Unmodified	3112.3653	0.36530059	614	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	14	0														1			10.473	10.473	4	3.5148E-07	2787	DP690-14	112.39	112.39			0.52166	0.61516	NaN	1	0	Median	135710000	86623000	49085000	521	614	496	1077	2579;2580;2581;2582	2582		4	9606
AGQPLPLTLPPELVPPSFR	0	1	Unmodified	2028.1408	0.14079758	2277	Q9NZM3	ITSN2	Intersectin-2	yes	yes	0	0	0	10	0										2							23.187	23.187	2	1.8523E-05	20885	DP690-10	126.09	114.3			0.60144	0.74534	4.0526	2	0	Median	16901000	10677000	6223900	522	2277	497	1078;1079	2583;2584;2585;2586	2583		4	9606
AGQSAAGAAPGGGVDTR	0	1	Unmodified	1441.691	0.69096847	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.5	1.12									1	1	1	1					10.549	10.549	2	1.5744E-22	3050	DP690-10	250.81	229.16			0.79061	0.91114	5.825	2	0	Median	733470000	392970000	340500000	523	549	498	1080;1081;1082;1083	2587;2588;2589;2590;2591;2592;2593;2594;2595	2587		9	9606
AGQSVIGLQMGTNK	1	0	Oxidation (M)	1418.7188	0.71876312	1330	Q15417	CNN3	Calponin-3	yes	yes	0	1	0	12.2	3.63						1								2	1		13.843	13.843	2	5.5827E-05	5970	DP690-6	139.76	72.798			0.85312	0.94798	31.002	4	0	Median	588280000	306530000	281750000	524	1330	499	1084;1085;1086;1087	2596;2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607	2607	2068	12	9606
AGQSVIGLQMGTNK	1	0	Unmodified	1402.7238	0.7238485	1330	Q15417	CNN3	Calponin-3	yes	yes	0	0	0	10	4						1								1			15.51	15.51	2	6.62E-10	9552	DP690-14	211.37	170.65			0.54461	0.60866	0.84322	2	0	Median	506050000	314230000	191820000	525	1330	499	1088;1089	2608;2609;2610;2611;2612;2613;2614;2615;2616	2610		9	9606
AGQTTYSGVIDCFR	0	1	Unmodified	1573.7195	0.7194914	2359;274	O75746;Q9UJS0	SLC25A12;SLC25A13	Calcium-binding mitochondrial carrier protein Aralar1;Calcium-binding mitochondrial carrier protein Aralar2	no	no	0	0	0	12	0												1					17.626	17.626	2	2.0226E-14	12588	DP690-12	227.36	195.49			0.79568	0.91626	NaN	1	0	Median	133310000	73144000	60163000	526	274;2359	500	1090	2617;2618;2619;2620	2617		4	9606
AGQVVTIWAAGAGATHSPPTDLVWK	1	0	Unmodified	2532.3125	0.31250737	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11	0											2						19.636	19.636	3	2.0169E-06	16003	DP690-11	122.65	95.901			NaN	NaN	NaN	0	0	Median	107910000	68851000	39057000	527	359	501	1091;1092	2621;2622;2623;2624	2621		4	9606
AGSMSAELGVGCALR	0	1	Oxidation (M)	1493.6966	0.69664747	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	1	0	7	0							2										15.003	15.003	2	0.0028579	8277	DP690-7	138.25	86.298			NaN	NaN	NaN	0	0	Median	0	0	0	528	296	502	1093;1094	2625;2626	2625	308	2	9606
AGSNMLLIGVHGPTTPCEEVSMK	1	0	Oxidation (M)	2443.1546	0.15455145	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	10	0										1							16.695	16.695	3	0.00027631	11811	DP690-10	103.4	89.146			0.71683	0.88568	NaN	1	0	Median	59380000	40715000	18666000	529	250	503	1095	2627;2628;2629	2627	237	3	9606
AGSNMLLIGVHGPTTPCEEVSMK	1	0	Unmodified	2427.1596	0.15963682	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							17.583	17.583	3	0.039471	13271	DP690-10	58.835	21.283			NaN	NaN	NaN	0	0	Median	45266000	0	45266000	530	250	503	1096	2630	2630		1	9606
AGSPFSPPPSSSSLTGEAAISR	0	1	Unmodified	2102.028	0.02801225	1885	Q96JY6	PDLIM2	PDZ and LIM domain protein 2	yes	yes	0	0	0	14	0														2			17.138	17.138	2	0.0001616	11886	DP690-14	117.48	67.131			NaN	NaN	NaN	0	0	Median	9155800	9155800	0	531	1885	504	1097;1098	2631;2632;2633	2631		3	9606
AGSQLGPGYQHHAQPK	1	0	Unmodified	1674.8227	0.82265134	1092	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	11	0											1						10.282	10.282	4	0.00021209	2492	DP690-11	99.161	76.176			0.73098	0.83114	NaN	1	0	Median	192680000	132100000	60573000	532	1092	505	1099	2634;2635;2636;2637;2638	2637		5	9606
AGSSGNSCITYQPSVSGEHK	1	0	Unmodified	2064.9171	0.91708159	1957	Q99755	PIP5K1A	Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha	yes	yes	0	0	0	12	0												1					12.11	12.11	3	4.2199E-05	4915	DP690-12	114.3	98.954			0.93161	1.1175	NaN	1	0	Median	29333000	16285000	13047000	533	1957	506	1100	2639;2640;2641;2642	2641		4	9606
AGSSTPGDAPPAVAEVQGR	0	1	Unmodified	1765.8595	0.85949036	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															13.924	13.924	2	0.00020395	6417	DP690-2	110.25	91.92			0.65709	0.68505	NaN	1	0	Median	5055200	2739500	2315600	534	1555	507	1101	2643;2644	2644		2	9606
AGSYPEGAPAVLADKR	1	1	Acetyl (Protein N-term)	1642.8315	0.83148469	1881	Q96IZ6	METTL2A	Methyltransferase-like protein 2A	yes	yes	1	0	1	10	4						1								1			16.227	16.227	2	1.0639E-05	9580	DP690-6	130.69	101.15			0.70477	0.78984	NaN	1	0	Median	11511000	6796900	4714600	535	1881	508	1102;1103	2645;2646;2647;2648;2649;2650;2651	2650		7	9606
AGTFQAFEQFGQQLLAHGHYASPEIK	1	0	Unmodified	2874.4089	0.40892695	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							21.361	21.361	4	3.0127E-07	18598	DP690-10	134.62	116.21			0.861	1.0656	NaN	1	0	Median	66061000	34632000	31429000	536	1236	509	1104	2652;2653	2653		2	9606
AGTGVDNVDLEAATR	0	1	Unmodified	1487.7216	0.72159989	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	4	0				1													15.248	15.248	2	2.2519E-16	8877	DP690-4	264.3	198.84			1.304	1.3682	NaN	1	0	Median	125290000	52925000	72368000	537	167	510	1105	2654;2655;2656;2657;2658;2659;2660	2657		7	9606
AGTLLPVIQFLQK	1	0	Unmodified	1426.8548	0.85478632	1	A0A0B4J2E5;Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	no	0	0	0	10	0										1							22.735	22.735	2	0.0018122	20411	DP690-10	93.649	86.268			0.81368	0.98638	NaN	1	0	Median	11102000	6901100	4201000	538	1	511	1106	2661;2662;2663;2664	2664		4	9606
AGTLQVGDR	0	1	Unmodified	915.47739	0.47739386	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							11.092	11.092	2	0.02334	3883	DP690-10	76.1	40.606			0.69239	0.8656	NaN	1	0	Median	62521000	34328000	28193000	539	1254	512	1107	2665;2666	2665		2	9606
AGTLSITEFADMLSGNAGGFR	0	1	Oxidation (M)	2130.0052	0.0051683175	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9.5	0.5									1	1							22.501	22.501	2	4.095E-07	19966	DP690-10	143.46	118.13			0.78421	0.98217	NaN	1	0	Median	51825000	30267000	21558000	540	1319	513	1108;1109	2667;2668;2669;2670;2671;2672;2673	2670	2011	7	9606
AGTLSITEFADMLSGNAGGFR	0	1	Unmodified	2114.0103	0.010253695	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.75	2.28					1				1	1	1						23.196	23.196	2	3.2702999999999997E-19	22236	DP690-10	247.73	214.14			0.89466	1.1187	6.2586	2	0	Median	43879000	13185000	30694000	541	1319	513	1110;1111;1112;1113	2674;2675;2676;2677;2678;2679;2680	2674		7	9606
AGTNMMMVGVHGPK	1	0	3 Oxidation (M)	1476.6523	0.65233982	1270	Q14315	FLNC	Filamin-C	yes	yes	0	3	0	2	0		1															10.319	10.319	3	0.033597	2304	DP690-2	47.189	28.458			0.4571	0.46187	NaN	1	0	Median	18992000	8742400	10250000	542	1270	514	1114	2681;2682	2682	1942;1943;1944	2	9606
AGTQIENIEEDFRDGLK	1	1	Unmodified	1933.9381	0.93813461	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	1	7	4			1								1						19.362	19.362	3	1.062E-07	15680	DP690-11	150.12	114.4			1.2805	1.4568	32.918	2	0	Median	118970000	64509000	54459000	543	476	515	1115;1116	2683;2684;2685;2686;2687	2684		5	9606
AGTVLQEASYK	1	0	Unmodified	1165.5979	0.59790293	1792	Q92828	CORO2A	Coronin-2A	yes	yes	0	0	0	12	0												1					13.576	13.576	2	0.00012456	6996	DP690-12	135.55	77.999			0.74557	0.8865	NaN	1	0	Median	74870000	42982000	31887000	544	1792	516	1117	2688;2689	2689		2	9606
AGTVVLDDVELR	0	1	Acetyl (Protein N-term)	1327.6983	0.69834526	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	1	0	0	7.25	3.77			1	1							2						22.021	22.021	2	8.4503E-05	17497	DP690-3	166.34	142.12			0.68066	0.7644	18.53	2	0	Median	10213000	5237300	4975700	545	581	517	1118;1119;1120;1121	2690;2691;2692;2693;2694;2695;2696;2697;2698;2699	2695		10	9606
AGVAAPATQVAQVTLQSVQR	0	1	Unmodified	1994.0909	0.090887278	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.5	1.12									1	1	1	1					18.451	18.451	2	4.1019E-43	14466	DP690-10	300.49	300.49			0.73672	0.91485	4.7476	3	0	Median	270200000	158700000	111500000	546	1319	518	1122;1123;1124;1125	2700;2701;2702;2703;2704;2705;2706;2707;2708;2709;2710;2711;2712	2700		13	9606
AGVAPLQVK	1	0	Unmodified	881.53345	0.53345218	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.5	0.5									1	1							12.991	12.991	2	0.00080826	5759	DP690-9	132.09	58.119			0.7687	0.83775	9.1129	2	0	Median	1883799999.9999998	1081600000	802200000	547	549	519	1126;1127	2713;2714;2715;2716;2717;2718;2719;2720	2720		8	9606
AGVENGKPTHFTVYTK	2	0	Unmodified	1747.8893	0.88933392	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										2							11.592	11.592	3;4	0.024096	4582	DP690-10	86.214	38.972			0.81568	0.92238	NaN	1	0	Median	333980000	205650000	128340000	548	250	520	1128;1129	2721;2722;2723	2723		3	9606
AGVHAQQEATTGPGAHRPK	1	1	Unmodified	1911.9664	0.96635547	1622	Q8IY92	SLX4	Structure-specific endonuclease subunit SLX4	yes	yes	0	0	1	10	0										1							10.236	10.236	4	0.00051267	2504	DP690-10	84.375	56.917			0.59195	0.72793	NaN	1	0	Median	28924000	14879000	14045000	549	1622	521	1130	2724;2725;2726	2726		3	9606
AGVIFPVGR	0	1	Unmodified	914.53379	0.53378653	249	O75367;Q9P0M6	H2AFY;H2AFY2	Core histone macro-H2A.1;Core histone macro-H2A.2	yes	no	0	0	0	14	0														1			16.345	16.345	2	0.0020226	10754	DP690-14	114.72	71.597			0.91268	1.1034	NaN	1	0	Median	55009000	27202000	27807000	550	249	522	1131	2727;2728;2729;2730	2729		4	9606
AGVLAHLEEER	0	1	Unmodified	1222.6306	0.63060004	668;669	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	2	0		2															14.258	14.258	2;3	0.00015605	6781	DP690-2	114.89	81.352			1.1158	1.162	2.4807	2	0	Median	79991000	36590000	43401000	551	668;669	523	1132;1133	2731;2732;2733;2734;2735;2736;2737;2738	2734		8	9606
AGVLAHLEEERDLK	1	1	Unmodified	1578.8366	0.83657007	668;669	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	1	2	0		1															14.375	14.375	3	0.00012209	6940	DP690-2	111.72	45.471			1.2275	1.2084	NaN	1	0	Median	20415000	9586000	10829000	552	668;669	524	1134	2739;2740	2740		2	9606
AGVMALANLLQIQR	0	1	Oxidation (M)	1512.8446	0.84463234	2426	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	1	0	11	4							1								1		20.8	20.8	2	2.6503E-06	15975	DP690-15	190.62	190.62			0.84478	0.97183	2.7414	2	0	Median	53974000	28419000	25555000	553	2426	525	1135;1136	2741;2742;2743;2744;2745;2746	2742	2860	6	9606
AGVNTVTTLVENKK	2	0	Unmodified	1472.8199	0.81985737	984	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	14.3	0.471														2	1		14.021	14.021	2;3	2.2255E-05	7516	DP690-14	123.95	80.542			0.95838	1.0842	0.076419	2	0	Median	174940000	82411000	92530000	554	984	526	1137;1138;1139	2747;2748;2749;2750;2751;2752	2749		6	9606
AGVPGVAAPGAPAAAPPAK	1	0	Unmodified	1568.8675	0.86747627	871	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	12	0												1					14.094	14.094	2	0.00064597	7725	DP690-12	95.477	95.477			0.48932	0.58297	NaN	1	0	Median	40068000	26548000	13520000	555	871	527	1140	2753;2754;2755;2756	2754		4	9606
AGVQADEDEDGDEKDEK	2	0	Unmodified	1848.7497	0.74972472	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	1	10	0										1							10.38	10.38	3	0.040685	2727	DP690-10	81.651	61.544			0.55192	0.69693	NaN	1	0	Median	68955000	35944000	33011000	556	591	528	1141	2757	2757		0	9606
AGVQADEDEDGDEKDEKK	3	0	Unmodified	1976.8447	0.84468773	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	2	10	0										1							10.284	10.284	3	0.0058111	2611	DP690-10	113.28	80.769			NaN	NaN	NaN	0	0	Median	14223000	14223000	0	557	591	529	1142	2758	2758		1	9606
AGVRPSSSGSAWEACSEAPSK	1	1	Unmodified	2119.9593	0.95928076	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	1	10	0										1							12.514	12.514	3	0.0018797	5884	DP690-10	71.001	40.465			0.59837	0.7622	NaN	1	0	Median	61384000	35160000	26224000	558	1158	530	1143	2759	2759		1	9606
AGVSFSGHR	0	1	Acetyl (Protein N-term)	958.46208	0.46207815	1365	Q16643	DBN1	Drebrin	yes	yes	1	0	0	12.7	1.25											1		1	1			13.184	13.184	2	0.00019613	6735	DP690-11	145.34	91.632			0.96375	1.1663	14.365	2	0	Median	941020000	61930000	879090000	559	1365	531	1144;1145;1146	2760;2761;2762;2763;2764;2765;2766	2761		7	9606
AGVSISVVHGNLSEEAAK	1	0	Unmodified	1766.9163	0.91627696	680	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	6	0						1											14.682	14.682	3	0.0075587	7781	DP690-6	88.385	56.859			NaN	NaN	NaN	0	0	Median	5017400	5017400	0	560	680	532	1147	2767;2768	2767		2	9606
AGVVGPELHEQLLSAEK	1	0	Unmodified	1775.9418	0.94176342	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.2	3.19		1							2	1	1						15.792	15.792	2;3	7.2446E-08	9527	DP690-9	155.14	121.26			0.7048	0.75983	12.551	5	0	Median	1075400000	608430000	466930000	561	1319	533	1148;1149;1150;1151;1152	2769;2770;2771;2772;2773;2774;2775;2776;2777;2778;2779;2780;2781;2782;2783;2784;2785;2786	2786		18	9606
AGVVTPGITEDQLWR	0	1	Unmodified	1640.8522	0.85222014	2030	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	14	0														1			18.854	18.854	2	1.2268E-05	14101	DP690-14	152.64	115.97			0.83531	0.99332	NaN	1	0	Median	114800000	59244000	55559000	562	2030	534	1153	2787;2788	2787		2	9606
AGYAHFLNVQGR	0	1	Unmodified	1331.6735	0.67346791	1436	Q5T440	IBA57	Putative transferase CAF17, mitochondrial	yes	yes	0	0	0	14	0														1			14.608	14.608	3	0.00016568	8377	DP690-14	95.483	73.623			1.1486	1.3752	NaN	1	0	Median	100250000	48858000	51389000	563	1436	535	1154	2789;2790;2791	2790		3	9606
AGYKPVAIQTYPILGEK	2	0	Acetyl (Protein N-term)	1889.0299	0.02985015	1722	Q8TED0	UTP15	U3 small nucleolar RNA-associated protein 15 homolog	yes	yes	1	0	1	12	0												2					19.228	19.228	2	0.00012338	14944	DP690-12	104.09	52.804			0.5096	0.59812	NaN	1	0	Median	12645000	8375300	4269900	564	1722	536	1155;1156	2792;2793;2794;2795;2796	2795		5	9606
AGYLMGLNSAEMLK	1	0	Oxidation (M)	1512.7316	0.73163599	2378	Q9UKX3	MYH13	Myosin-13	yes	yes	0	1	0	12	0												1					13.607	13.607	2	0.021107	7011	DP690-12	72.848	24.757			0.692	0.83161	NaN	1	0	Median	25892000	15705000	10187000	565	2378	537	1157	2797;2798	2797	2805	2	9606
AGYLYALLYLNTEIGPGTVCESAIK	1	0	Unmodified	2715.383	0.3829547	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	0	5	0					1												24.161	24.161	2	0.00083623	19406	DP690-5	95.428	56.395			NaN	NaN	NaN	0	0	Median	0	0	0	566	2208	538	1158	2799	2799		1	9606
AGYSQGATQYTQAQQTR	0	1	Unmodified	1857.8606	0.86055299	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	11	0											3						12.426	12.426	2	3.1677E-34	5561	DP690-11	257.2	195.38			NaN	NaN	NaN	0	0	Median	0	0	0	567	1889	539	1159;1160;1161	2800;2801;2802	2800		3	9606
AGYVDFENGQWATDDIPDDLNSIR	0	1	Unmodified	2710.2147	0.2147034	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						22.19	22.19	2	2.148E-23	19495	DP690-11	202.32	178.43			NaN	NaN	NaN	0	0	Median	0	0	0	568	897	540	1162	2803	2803		1	9606
AHADDELAALR	0	1	Unmodified	1180.5836	0.58364985	781	P48681	NES	Nestin	yes	yes	0	0	0	10.5	0.5										1	1						13.743	13.743	2	7.9109E-05	7579	DP690-10	148.94	130.96			0.73558	0.88014	0.48735	2	0	Median	272170000	150650000	121530000	569	781	541	1163;1164	2804;2805;2806;2807;2808	2805		5	9606
AHDGAEVCSAIFSK	1	0	Unmodified	1490.6824	0.68237762	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	13	0													2				14.342	14.342	2;3	5.5809E-09	7796	DP690-13	218.94	195.42			0.81544	0.92231	0.85407	2	0	Median	307380000	170920000	136460000	570	1114	542	1165;1166	2809;2810;2811;2812;2813;2814;2815;2816	2812		8	9606
AHEEQLKEAQAVPATLPELEATK	2	0	Unmodified	2502.2966	0.29658254	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							15.935	15.935	3;4	0.00039516	9781	DP690-9	80.453	80.453			0.8073	0.96258	5.7125	2	0	Median	143350000	77471000	65882000	571	1319	543	1167;1168	2817;2818;2819	2818		3	9606
AHEGEIEDLALGPDGK	1	0	Unmodified	1649.7897	0.78967946	2171	Q9HCU5	PREB	Prolactin regulatory element-binding protein	yes	yes	0	0	0	13	0													1				15.647	15.647	3	0.0093642	9669	DP690-13	59.728	44.088			0.72061	0.83388	NaN	1	0	Median	48844000	30332000	18513000	572	2171	544	1169	2820	2820		1	9606
AHEPTYFTVDCAEAGQGDVSIGIK	1	0	Unmodified	2564.1853	0.18531753	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.1	1.47		1							1	32	7	2		1			26.162	26.162	2;3	1.4269000000000002E-45	13385	DP690-10	279.91	265.4			0.78568	0.93363	17.515	28	0	Median	1084400000	615740000	468640000	573	549	545	1170;1171;1172;1173;1174;1175;1176;1177;1178;1179;1180;1181;1182;1183;1184;1185;1186;1187;1188;1189;1190;1191;1192;1193;1194;1195;1196;1197;1198;1199;1200;1201;1202;1203;1204;1205;1206;1207;1208;1209;1210;1211;1212;1213	2821;2822;2823;2824;2825;2826;2827;2828;2829;2830;2831;2832;2833;2834;2835;2836;2837;2838;2839;2840;2841;2842;2843;2844;2845;2846;2847;2848;2849;2850;2851;2852;2853;2854;2855;2856;2857;2858;2859;2860;2861;2862;2863;2864;2865;2866;2867;2868;2869;2870;2871;2872;2873;2874;2875;2876;2877;2878;2879;2880;2881;2882;2883;2884;2885;2886;2887;2888;2889;2890;2891;2892;2893;2894;2895;2896;2897;2898;2899;2900;2901;2902;2903;2904	2825		80	9606
AHFGLPSVEAEDKEGKPPISVK	3	0	Unmodified	2334.222	0.22196103	2040	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	2	13	0													1				14.791	14.791	4	4.9387E-07	8450	DP690-13	142.84	119.39			0.79477	0.83253	NaN	1	0	Median	108870000	57385000	51482000	574	2040	546	1214	2905;2906;2907;2908;2909	2908		5	9606
AHIANPSGASTECFVTDNADGTYQVEYTPFEK	1	0	Unmodified	3518.5572	0.55724327	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							18.34	18.34	3	1.4938E-29	14327	DP690-10	187.89	181.39			0.72987	0.86694	NaN	1	0	Median	250790000	162580000	88211000	575	250	547	1215	2910;2911;2912	2911		3	9606
AHLMEIQVNGGTVAEK	1	0	Oxidation (M)	1711.8563	0.85631924	698	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	0	13	0													1				13.155	13.155	2	0.0038676	6180	DP690-13	135.02	90.406			NaN	NaN	NaN	0	0	Median	0	0	0	576	698	548	1216	2913	2913	1020	1	9606
AHLQAEVQHLR	0	1	Unmodified	1300.7	0.70001701	164	O43166	SIPA1L1	Signal-induced proliferation-associated 1-like protein 1	yes	yes	0	0	0	10	0										1							10.796	10.796	3	0.056713	3382	DP690-10	51.727	7.0876			NaN	NaN	NaN	0	0	Median	0	0	0	577	164	549	1217	2914	2914		1	9606
AHMGMFTELAILYSK	1	0	2 Oxidation (M)	1742.8372	0.8371637	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	2	0	6	4		1								1							18.02	18.02	3	0.0013953	11302	DP690-2	78.615	50.881			1.0718	1.1941	1.9384	2	0	Median	77447000	38014000	39434000	578	1075	550	1218;1219	2915;2916;2917;2918;2919;2920	2917	1675;1676	6	9606
AHPVFYQGTYSQALNDAK	1	0	Unmodified	2008.9643	0.96428978	1834	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	13	0													1				15.571	15.571	3	0.00044282	9662	DP690-13	88.637	88.637			0.85585	0.97994	NaN	1	0	Median	98579000	55053000	43525000	579	1834	551	1220	2921	2921		1	9606
AHPVFYQGTYSQALNDAKR	1	1	Unmodified	2165.0654	0.065400809	1834	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	1	13	0													1				14.548	14.548	3	7.0396E-12	8061	DP690-13	168.42	148.51			0.81733	0.95026	NaN	1	0	Median	64836000	33208000	31628000	580	1834	552	1221	2922;2923;2924	2922		3	9606
AHQANQLYPFAISLIESVR	0	1	Unmodified	2156.1378	0.13783747	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								22.414	22.414	3	0.00010035	17632	DP690-9	107.15	90.362			0.92827	1.1601	NaN	1	0	Median	10648000	5858100	4789500	581	1264	553	1222	2925;2926;2927;2928	2926		4	9606
AHQITDESLESTR	0	1	Unmodified	1485.7059	0.70594983	66	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	15	0															2		11.951	11.951	2;3	0.0012377	4607	DP690-15	88.092	75.927			0.78102	0.90812	NaN	1	0	Median	24966000	14345000	10621000	582	66	554	1223;1224	2929;2930;2931	2930		3	9606
AHQITDESLESTRR	0	2	Unmodified	1641.8071	0.80706086	66	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	1	15	0															1		10.59	10.59	3	4.1592E-06	3010	DP690-15	176.87	176.87			0.83495	0.90575	NaN	1	0	Median	251540000	132150000	119400000	583	66	555	1225	2932;2933;2934;2935	2933		4	9606
AHQLVMEGYNWCHDR	0	1	Unmodified	1914.8254	0.82537023	987	P67775;P62714	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	yes	no	0	0	0	6	0						1											14.32	14.32	4	0.0084486	7294	DP690-6	60.55	50.353			1.6545	1.892	NaN	1	0	Median	5654900	1903400	3751500	584	987	556	1226	2936;2937	2936		2	9606
AHQVVEDGYEFFAK	1	0	Unmodified	1638.7678	0.7678218	963;683;964	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	10.9	4.28						3			1					2		2	16.459	16.459	2;3	3.7513E-05	11084	DP690-14	118.13	102.74			0.932	1.039	156.38	3	0	Median	705970000	357960000	348000000	585	963;964;683	557	1227;1228;1229;1230;1231;1232;1233;1234	2938;2939;2940;2941;2942;2943;2944;2945;2946;2947;2948;2949;2950;2951;2952;2953	2944		16	9606
AHSFLMDFIHQVGLFGR	0	1	Oxidation (M)	1989.9883	0.98833646	1738	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	1	0	11	0											1						22.178	22.178	4	0.0010038	19473	DP690-11	75.316	75.316			0.78016	0.96822	NaN	1	0	Median	7946400	4657300	3289100	586	1738	558	1235	2954	2954	2314	1	9606
AHSPMIAVGSDDSSPNAMAK	1	0	2 Oxidation (M)	2016.8881	0.88808965	1840	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	2	0	10	4						1								1			11.297	11.297	3	9.2819E-05	3719	DP690-14	105.2	86.264			0.67391	0.78102	5.1788	2	0	Median	30550000	16824000	13726000	587	1840	559	1236;1237	2955;2956;2957;2958;2959;2960;2961;2962	2957	2412;2413	8	9606
AHSPMIAVGSDDSSPNAMAK	1	0	Oxidation (M)	2000.8932	0.89317503	1840	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	1	0	14	0														1			12.687	12.687	3	0.001815	5654	DP690-14	100.27	56.502			NaN	NaN	NaN	0	0	Median	14961000	0	14961000	588	1840	559	1238	2963;2964	2963	2412;2413	2	9606
AHTSPAPAPRPTPR	0	2	Unmodified	1454.7742	0.77424459	1907	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	0	1	2	0		1															10.02	10.02	3	0.06222	2077	DP690-2	56.956	49.798			0.64599	0.64521	NaN	1	0	Median	490690	203850	286840	589	1907	560	1239	2965;2966	2965		2	9606
AHTSSTQLQEELEK	1	0	Unmodified	1599.774	0.77402939	2530	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	3	0			2														12.9	12.9	2;3	0.0019384	5857	DP690-3	79.639	53.816			0.89739	0.95817	0.7275	2	0	Median	50626000	26874000	23752000	590	2530	561	1240;1241	2967;2968;2969;2970;2971	2970		5	9606
AHVQEVAQHNLK	1	0	Unmodified	1372.7211	0.72114638	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	10	0										1							10.305	10.305	3	9.7201E-05	2670	DP690-10	119.03	90.644			1.6612	1.9466	NaN	1	0	Median	300260000	137830000	162430000	591	1570	562	1242	2972;2973	2973		2	9606
AHVVPCFDASK	1	0	Unmodified	1229.5863	0.58629239	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.88	3.41		1							2	1	2		1	1			12.65	12.65	2;3	0.00010139	5376	DP690-9	136.99	119.52			0.7062	0.79679	10.139	6	0	Median	3388199999.9999995	1913999999.9999998	1474199999.9999998	592	549	563	1243;1244;1245;1246;1247;1248;1249;1250	2974;2975;2976;2977;2978;2979;2980;2981;2982;2983;2984;2985;2986;2987;2988;2989;2990;2991;2992	2990		19	9606
AHWTPFEGQK	1	0	Unmodified	1199.5724	0.57235688	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															13.447	13.447	2	0.0019939	5929	DP690-2	136.27	78.038			NaN	NaN	NaN	0	0	Median	5492000	5492000	0	593	602	564	1251	2993;2994	2993		2	9606
AIAALISEK	1	0	Unmodified	914.54368	0.54368251	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	3	0			1														15.003	15.003	2	0.0029889	8659	DP690-3	107.9	57.192			1.5059	1.6153	NaN	1	0	Median	20913000	8704000	12209000	594	1613	565	1252	2995;2996	2996		2	9606
AIAALISEKLETLR	1	1	Unmodified	1526.9032	0.90319307	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	1	11	0											1						19.329	19.329	3	7.8495E-06	15687	DP690-11	143.55	121.77			0.82367	1.0259	NaN	1	0	Median	40457000	19491000	20966000	595	1613	566	1253	2997;2998;2999	2997		3	9606
AIACLLFGGSR	0	1	Unmodified	1163.6121	0.61211321	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	8.33	3.77			1								2						19.063	19.063	2	0.00011943	13952	DP690-3	136.99	112.47			0.8824	0.96374	1.6205	2	0	Median	469520000	247620000	221900000	596	652	567	1254;1255;1256	3000;3001;3002;3003;3004;3005;3006;3007;3008	3007		9	9606
AIADTGANVVVTGGK	1	0	Unmodified	1371.7358	0.73579339	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	8	4				1								1					14.123	14.123	2	4.2917E-07	7324	DP690-4	165.58	66.445			0.89831	1.0717	NaN	1	0	Median	112350000	36443000	75906000	597	826	568	1257;1258	3009;3010;3011;3012;3013;3014	3013		6	9606
AIAELGIYPAVDPLDSTSR	0	1	Unmodified	1987.0262	0.026221336	392	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	13	0													1				20.954	20.954	2	7.9848E-17	16706	DP690-13	197.38	178.81			0.80447	0.98652	NaN	1	0	Median	30517000	16520000	13997000	598	392	569	1259	3015;3016;3017	3015		3	9606
AIAFLQQPR	0	1	Unmodified	1042.5924	0.59236404	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	4	0.816			1	1	1												16.35	16.35	2	0.00045086	10374	DP690-3	187.14	153.14			0.8568	0.88735	3.5255	2	0	Median	281830000	155750000	126080000	599	559	570	1260;1261;1262	3018;3019;3020;3021;3022;3023;3024	3020		7	9606
AIAGVINQPYYNYEAGPDAVLGR	0	1	Unmodified	2450.223	0.22302366	344	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	6	0						2											19.903	19.903	2	2.1077E-20	14004	DP690-6	201.06	153.45			NaN	NaN	NaN	0	0	Median	1296400	1296400	0	600	344	571	1263;1264	3025;3026;3027	3027		3	9606
AIAMSLGQDIPMDQR	0	1	2 Oxidation (M)	1676.7862	0.78619076	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	2	0	2	0		1															15.301	15.301	2	0.042415	8103	DP690-2	78.548	38.631			NaN	NaN	NaN	0	0	Median	1279400	1279400	0	601	1555	572	1265	3028	3028	2225;2226	1	9606
AIANLYGPLMALNHMVQQDYFPK	1	0	2 Oxidation (M)	2665.3033	0.30326459	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	2	0	12	0												1					21.451	21.451	3	0.00038298	17913	DP690-12	81.967	81.967			0.75001	0.89939	NaN	1	0	Median	29736000	18290000	11446000	602	750	573	1266	3029;3030;3031;3032;3033	3033	1099;1100	5	9606
AIAVLTSGGDAQGMNAAVR	0	1	Oxidation (M)	1816.9101	0.91014572	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	1	0	3	0			1														14.751	14.751	2	2.0581E-09	8353	DP690-3	151.7	125.58			0.88261	1.0188	NaN	1	0	Median	19873000	8946100	10927000	603	415	574	1267	3034;3035;3036	3036	459	3	9606
AIAYLFPSGLFEK	1	0	Unmodified	1454.781	0.78095267	1057	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	14	0														1			22.215	22.215	2	0.00097662	18410	DP690-14	103.31	82.475			0.77935	0.9459	NaN	1	0	Median	34659000	18218000	16441000	604	1057	575	1268	3037;3038;3039;3040;3041	3038		5	9606
AIDNAADLLIFGK	1	0	Unmodified	1359.7398	0.73981614	2508	Q9Y5X2	SNX8	Sorting nexin-8	yes	yes	0	0	0	7.4	4.18				3								1	1				21.395	21.395	2	0.00013891	17225	DP690-13	121.9	72.548			0.8426	0.99462	6.3429	2	0	Median	64158000	34668000	29490000	605	2508	576	1269;1270;1271;1272;1273	3042;3043;3044;3045;3046;3047;3048;3049	3045		8	9606
AIDSSNLKDDYSTAQR	1	1	Unmodified	1782.8384	0.83842057	1421	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	1	14	0														1			13.132	13.132	3	8.8026E-08	6300	DP690-14	171.11	142.38			0.73935	0.85959	NaN	1	0	Median	121100000	73361000	47737000	606	1421	577	1274	3050	3050		1	9606
AIEALHGHELRPGR	0	2	Unmodified	1554.8379	0.83790748	1910	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	1	12	0												1					10.626	10.626	4	0.0011182	3078	DP690-12	86.114	60.92			0.73182	0.82977	NaN	1	0	Median	22115000	12352000	9762800	607	1910	578	1275	3051;3052	3052		2	9606
AIEALKEFNEDGALAVLQQFK	2	0	Unmodified	2333.2267	0.22671206	207	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	1	12	0												1					22.262	22.262	3	1.0752E-23	18637	DP690-12	206.8	169.8			0.86292	1.0183	NaN	1	0	Median	17214000	8635600	8578100	608	207	579	1276	3053;3054	3053		2	9606
AIEDGNLEEMEEEVR	0	1	Oxidation (M)	1777.7676	0.76762339	834	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	1	0	10	0										1							15.352	15.352	2	0.016557	10033	DP690-10	107.09	58.094			NaN	NaN	NaN	0	0	Median	0	0	0	609	834	580	1277	3055	3055	1266	1	9606
AIEEGTLEEIEEEVR	0	1	Unmodified	1744.8367	0.83668923	835	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	12	2										1				1			22.697	22.697	2	2.5482E-05	17309	DP690-10	160.52	133.55			0.80854	1.0086	11.521	2	0	Median	72710000	35363000	37348000	610	835	581	1278;1279	3056;3057	3056		2	9606
AIEEIAGVGVPELINSPK	1	0	Unmodified	1835.004	0.0040293305	2042	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	yes	yes	0	0	0	10	0										1							20.324	20.324	2	0.070327	17183	DP690-10	102.9	102.9			NaN	NaN	NaN	0	0	Median	20640000	13890000	6750700	611	2042	582	1280	3058	3058		0	9606
AIELLQEFSDQHPENAAEIK	1	0	Unmodified	2281.1226	0.12264092	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11	0											2						18.884	18.884	2;3	1.885E-05	15132	DP690-11	128.59	94.327			NaN	NaN	NaN	0	0	Median	101720000	0	101720000	612	288	583	1281;1282	3059;3060;3061	3060		3	9606
AIELQPHFPDAYCNLANALK	1	0	Unmodified	2284.131	0.13103753	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	11	0											1						20.169	20.169	3	0.00025828	16818	DP690-11	103.17	83.379			1.0866	1.3076	NaN	1	0	Median	92309000	48966000	43342000	613	149	584	1283	3062;3063	3062		2	9606
AIELYNDKEK	2	0	Unmodified	1221.6241	0.62411768	1827	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	yes	yes	0	0	1	6	0						1											11.753	11.753	2	0.055029	4301	DP690-6	77.677	77.677			0.85537	0.88426	NaN	1	0	Median	6295800	2875900	3419900	614	1827	585	1284	3064	3064		1	9606
AIEPNDYTGK	1	0	Unmodified	1106.5244	0.52440364	244	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	7	0							1										12.157	12.157	2	0.025789	4761	DP690-7	96.331	19.273			NaN	NaN	NaN	0	0	Median	19380000	0	19380000	615	244	586	1285	3065	3065		1	9606
AIEPPPLDAVIEAEHTLR	0	1	Unmodified	1970.0473	0.047291129	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	9.5	0.5									1	1							20.398	20.398	3	1.1743E-06	17292	DP690-10	132.4	95.651			0.78756	0.93761	NaN	1	0	Median	226470000	131920000	94548000	616	1137	587	1286;1287	3066;3067;3068;3069;3070	3069		5	9606
AIEPQKEEADENYNSVNTR	1	1	Unmodified	2206.0138	0.013818748	1164	Q12846	STX4	Syntaxin-4	yes	yes	0	0	1	14	0														1			12.339	12.339	3	1.5143E-10	5150	DP690-14	158.92	142.98			0.76752	0.96253	NaN	1	0	Median	40300000	24002000	16298000	617	1164	588	1288	3071;3072	3071		2	9606
AIEQADLLQEEAETPR	0	1	Unmodified	1811.8901	0.89012178	906	P56377	AP1S2	AP-1 complex subunit sigma-2	yes	yes	0	0	0	16	0																1	17.077	17.077	2	3.7508E-22	11190	DP690-16	250.69	250.69			0.82014	0.95919	NaN	1	0	Median	6238300	3527600	2710800	618	906	589	1289	3073;3074;3075;3076	3074		4	9606
AIEQADLLQEEDESPR	0	1	Unmodified	1841.8643	0.86430096	958	P61966	AP1S1	AP-1 complex subunit sigma-1A	yes	yes	0	0	0	16	0																1	16.373	16.373	2	8.8248E-33	10253	DP690-16	309.68	283.78			0.78596	0.8985	NaN	1	0	Median	35442000	20620000	14823000	619	958	590	1290	3077;3078;3079;3080	3079		4	9606
AIETQCYVVAAAQCGR	0	1	Unmodified	1795.8345	0.83453794	1586	Q86X76	NIT1	Nitrilase homolog 1	yes	yes	0	0	0	7	0							2										16.008	16.008	2	1.0328E-11	9555	DP690-7	184.36	137.9			NaN	NaN	NaN	0	0	Median	17254000	8364600	8889800	620	1586	591	1291;1292	3081;3082;3083;3084	3082		4	9606
AIETTDIISR	0	1	Unmodified	1117.5979	0.59790293	1873	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	15	0															1		14.863	14.863	2	0.00044842	8516	DP690-15	120.15	120.15			0.85377	0.94752	NaN	1	0	Median	89291000	47583000	41708000	621	1873	592	1293	3085;3086;3087;3088	3085		4	9606
AIETTDVTR	0	1	Unmodified	1004.5138	0.51383895	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	3	0			1														11.328	11.328	2	0.012313	3811	DP690-3	108.74	21.876			NaN	NaN	NaN	0	0	Median	17160000	0	17160000	622	1887	593	1294	3089;3090	3089		2	9606
AIFAVLTSVLTK	1	0	Unmodified	1261.7646	0.76457433	2504	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	11	0											1						22.795	22.795	2	0.00031055	20274	DP690-11	154.85	142.23			0.80282	0.99148	NaN	1	0	Median	14072000	7886800	6185100	623	2504	594	1295	3091;3092;3093	3091		3	9606
AIFDQLMTFGIEPFK	1	0	Oxidation (M)	1771.8855	0.8854941	1966	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	1	0	3	0			1														23.289	23.289	2	0.0052877	18945	DP690-3	84.718	60.218			0.96586	1.0106	NaN	1	0	Median	3557000	1639700	1917300	624	1966	595	1296	3094	3094	2512	1	9606
AIFEIVLNR	0	1	Unmodified	1073.6233	0.62332982	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	9.5	0.5									1	1							19.689	19.689	2	0.00016296	16300	DP690-10	168.45	132.96			0.77017	0.96456	NaN	1	0	Median	50702000	28683000	22019000	625	269	596	1297;1298	3095;3096;3097	3095		3	9606
AIFLADGNVFTTGFSR	0	1	Unmodified	1714.8679	0.8678702	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	11.3	1.7									1	1	2		1	1			21.411	21.411	2	1.0571E-25	18676	DP690-10	213.63	148.9			0.93975	1.1066	14.846	4	0	Median	306000000	174680000	131330000	626	2395	597	1299;1300;1301;1302;1303;1304	3098;3099;3100;3101;3102;3103;3104;3105;3106;3107;3108;3109;3110;3111;3112;3113	3098		16	9606
AIFQEVHVQSLPQVDR	0	1	Unmodified	1864.9795	0.97954591	1931	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	3	0			1														17.048	17.048	3	0.00088411	11376	DP690-3	84.508	57.049			1.2603	1.4359	NaN	1	0	Median	25459000	11281000	14178000	627	1931	598	1305	3114;3115	3115		2	9606
AIFQTIQNR	0	1	Unmodified	1089.5931	0.59309232	320	O95373	IPO7	Importin-7	yes	yes	0	0	0	3	0			1														14.825	14.825	2	0.016208	8331	DP690-3	105.14	47.958			NaN	NaN	NaN	0	0	Median	13652000	0	13652000	628	320	599	1306	3116;3117	3116		2	9606
AIGGGLSSVGGGSSTIK	1	0	Unmodified	1446.7678	0.7678218	31	CON__P02538;P02538;CON__P48668;P48668	KRT6A;KRT6C	Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C	yes	no	0	0	0	7.6	5.54	1	1							1	1						1	14.534	14.534	2	8.8996E-05	6201	DP690-1	145.81	100.95		+	NaN	NaN	NaN	0	0	Median	78217000	78217000	0	629	31	600	1307;1308;1309;1310;1311	3118;3119;3120;3121;3122;3123;3124	3118		7	9606
AIGIITHILPEDHLLLASSK	1	0	Unmodified	2140.2256	0.22558985	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	4.67	0.943				2		1											19.049	19.049	3;4	2.3737E-08	13579	DP690-4	158.45	140.71			NaN	NaN	NaN	0	0	Median	84081000	0	84081000	630	1784	601	1312;1313;1314	3125;3126;3127;3128;3129;3130	3125		6	9606
AIGNIELGIR	0	1	Unmodified	1054.6135	0.61349341	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	10	0										1							17.259	17.259	2	0.046361	12847	DP690-10	65.465	18.384			0.80874	1.0022	NaN	1	0	Median	100810000	55098000	45711000	631	763	602	1315	3131	3131		1	9606
AIGPHDVLATLLNNLK	1	0	Unmodified	1687.9621	0.96210494	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	10	0.535									1	5	1						23.097	23.097	2;3	1.307E-35	20800	DP690-10	234.79	177.44			0.78243	0.96265	9.8386	3	0	Plateau	168300000	102620000	65683000	632	263	603	1316;1317;1318;1319;1320;1321;1322	3132;3133;3134;3135;3136;3137;3138;3139;3140;3141;3142;3143;3144;3145;3146;3147;3148;3149;3150	3136		19	9606
AIGTEPDSDVLSEIMHSFAK	1	0	Unmodified	2146.0252	0.025235058	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	11	0											1						22.956	22.956	3	0.017145	20505	DP690-11	74.776	45.435			NaN	NaN	NaN	0	0	Median	4493100	0	4493100	633	82	604	1323	3151;3152	3151		2	9606
AIGTEPDSDVLSEIMHSFAK	1	0	Oxidation (M)	2162.0201	0.02014968	82	O00410	IPO5	Importin-5	yes	yes	0	1	0	3	0			1														20.656	20.656	3	0.00032056	15738	DP690-3	91.926	82.868			1.0767	1.1371	NaN	1	0	Median	38013000	18198000	19815000	634	82	604	1324	3153;3154;3155;3156	3156	85	4	9606
AIGVLTSGGDAQGMNAAVR	0	1	Oxidation (M)	1802.8945	0.89449566	518;1089	P17858;Q01813	PFKL;PFKP	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type	no	no	0	1	0	9.4	3.2			1								4						14.605	14.605	2	4.8547E-11	8040	DP690-3	166.45	128.73			0.98263	1.0606	NaN	1	0	Median	87712000	52307000	35405000	635	518;1089	605	1325;1326;1327;1328;1329	3157;3158;3159;3160;3161;3162;3163;3164	3162	659	8	9606
AIGVLTSGGDAQGMNAAVR	0	1	Unmodified	1786.8996	0.89958103	518;1089	P17858;Q01813	PFKL;PFKP	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type	no	no	0	0	0	8.33	3.77			1								2						16.284	16.284	2	2.7148E-17	10383	DP690-3	207.95	178.01			1.0418	1.1999	NaN	1	0	Median	18033000	8045600	9987100	636	518;1089	605	1330;1331;1332	3165;3166;3167;3168;3169;3170	3169		6	9606
AIGYLIPLMDAEYANYYTR	0	1	Oxidation (M)	2252.0824	0.082356006	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	1	0	10	0										1							21.718	21.718	2	0.0010018	18977	DP690-10	96.866	96.866			0.75372	0.94173	NaN	1	0	Median	30753000	16052000	14701000	637	263	606	1333	3171;3172	3171	267	2	9606
AIHVLDVEQGQLER	0	1	Unmodified	1605.8475	0.84746911	2128	Q9H6Y2	WDR55	WD repeat-containing protein 55	yes	yes	0	0	0	13	0													1				15.615	15.615	3	1.1307E-05	9585	DP690-13	138.55	138.55			0.8654	0.99102	NaN	1	0	Median	220080000	103160000	116920000	638	2128	607	1334	3173;3174;3175;3176	3174		4	9606
AIIASNIMYIVGQYPR	0	1	Oxidation (M)	1823.9604	0.96039038	128	O14980	XPO1	Exportin-1	yes	yes	0	1	0	3	0			2														20.044	20.044	2	0.00041842	15183	DP690-3	139.32	104.43			NaN	NaN	NaN	0	0	Median	6789700	6789700	0	639	128	608	1335;1336	3177;3178;3179	3178	140	3	9606
AIIDEFEQK	1	0	Unmodified	1091.5499	0.5498901	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	3	0			1														16.704	16.704	2	0.034742	10999	DP690-3	72.23	38.141			1.1097	1.1925	NaN	1	0	Median	16743000	7684100	9058800	640	1311	609	1337	3180	3180		1	9606
AIIEEYLHLNDMK	1	0	Unmodified	1587.7967	0.79667909	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	10	0										1							18.825	18.825	3	0.00038014	15048	DP690-10	101.72	73.61			0.87168	1.0713	NaN	1	0	Median	36351000	21056000	15296000	641	1111	610	1338	3181;3182;3183;3184	3182		4	9606
AIIIFVPVPQLK	1	0	Unmodified	1336.8482	0.84824438	962	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	15	0															1		22.084	22.084	2	0.00044639	17395	DP690-15	113.71	113.71			0.85728	1.0025	NaN	1	0	Median	6982000	3507100	3475000	642	962	611	1339	3185;3186;3187;3188	3187		4	9606
AIIKPQYVDQIPK	2	0	Unmodified	1511.8712	0.87116466	943	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	1	12	0												1					15.055	15.055	3	0.00051469	9150	DP690-12	108.68	100.85			0.79391	0.90772	NaN	1	0	Median	67793000	37022000	30771000	643	943	612	1340	3189;3190;3191	3190		3	9606
AIIKPVIVDKDVK	3	0	Unmodified	1436.8967	0.89665113	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	2	11	0											1						12.756	12.756	3	0.015097	6112	DP690-11	66.708	56.358			0.74095	0.80257	NaN	1	0	Median	72212000	40857000	31355000	644	1573	613	1341	3192;3193	3192		2	9606
AIITALGVER	0	1	Unmodified	1041.6182	0.61824444	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							16.567	16.567	2	0.07406	11900	DP690-10	82.645	19.08			NaN	NaN	NaN	0	0	Median	62053000	0	62053000	645	1782	614	1342	3194	3194		1	9606
AIKVEQATKPSFESGR	2	1	Unmodified	1746.9264	0.92644771	692	P38159	RBMX	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	yes	0	0	2	13	0													1				11.701	11.701	3	0.011256	4368	DP690-13	63.462	31.806			0.77036	0.85052	NaN	1	0	Median	14067000	7080900	6985800	646	692	615	1343	3195;3196;3197	3197		3	9606
AILCAIQNLEER	0	1	Unmodified	1428.7395	0.73949856	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								18.714	18.714	2	0.013797	13263	DP690-9	104.43	44.634			NaN	NaN	NaN	0	0	Median	0	0	0	647	2217	616	1344	3198	3198		1	9606
AILCLLLGGVER	0	1	Unmodified	1312.7537	0.75369207	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	8.67	4.03			1								1	1					22.075	22.075	2	3.045E-05	19304	DP690-11	187.22	132.49			0.85168	1.0215	10.069	3	0	Median	79528000	42930000	36598000	648	581	617	1345;1346;1347	3199;3200;3201;3202;3203;3204;3205;3206	3202		8	9606
AILELHYSQELSLLYLLQDDVDR	0	1	Unmodified	2745.4225	0.42251133	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								23.821	23.821	3	1.8525E-10	19242	DP690-9	155.71	155.71			0.8565	1.0699	NaN	1	0	Median	12149000	6203700	5944900	649	1046	618	1348	3207;3208;3209;3210;3211	3210		5	9606
AILEQQVLSEELTTKK	2	0	Unmodified	1829.0146	0.014594017	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	1	9.5	0.5									1	1							16.986	16.986	3	0.0047493	11115	DP690-9	67.102	56.288			0.75491	0.93736	20.589	2	0	Median	56826000	35802000	21023000	650	2411	619	1349;1350	3212;3213	3213		2	9606
AILHSIDCCSSDDTK	1	0	Unmodified	1720.7396	0.7396345	2142	Q9H981	ACTR8	Actin-related protein 8	yes	yes	0	0	0	12	0												1					12.671	12.671	3	0.069488	5770	DP690-12	39.517	23.343			0.69499	0.83519	NaN	1	0	Median	26166000	15257000	10908000	651	2142	620	1351	3214	3214		1	9606
AILIFNNHGKPR	1	1	Unmodified	1378.7834	0.78335271	1775	Q92572	AP3S1	AP-3 complex subunit sigma-1	yes	yes	0	0	1	16	0																1	12.27	12.27	3	0.00015402	4970	DP690-16	115.78	115.78			0.6913	0.76694	NaN	1	0	Median	27317000	12795000	14522000	652	1775	621	1352	3215;3216	3216		2	9606
AILNGIDSINK	1	0	Unmodified	1156.6452	0.64518747	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							16.263	16.263	2	0.00097769	11337	DP690-10	106.88	48.634			1.2696	1.5666	NaN	1	0	Median	105290000	39260000	66035000	653	2424	622	1353	3217	3217		1	9606
AILQHLGLESTCDDSIIVK	1	0	Unmodified	2111.0933	0.093255043	861	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	11	0											1						18.219	18.219	3	0.068579	14059	DP690-11	35.875	17.091			0.98617	1.1917	NaN	1	0	Median	56418000	28828000	27590000	654	861	623	1354	3218	3218		1	9606
AILQLDSPESAQSMYSFLK	1	0	Oxidation (M)	2143.0507	0.050721527	1299	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	1	0	10	0										2							20.213	20.213	2	1.7182E-05	17017	DP690-10	144.88	115.07			NaN	NaN	NaN	0	0	Median	12872000	12872000	0	655	1299	624	1355;1356	3219;3220	3219	1988	2	9606
AILQNHTDFKDK	2	0	Unmodified	1428.7361	0.73612775	1585	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	1	4	0				1													10.708	10.708	3	0.00018033	3125	DP690-4	114.86	80.361			0.93393	0.97382	NaN	1	0	Median	48519000	24135000	24384000	656	1585	625	1357	3221;3222;3223;3224	3222		4	9606
AILSTKPPGTFLLR	1	1	Unmodified	1512.9028	0.90279914	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	1	3	0			1														17.275	17.275	3	0.00011937	11658	DP690-3	112.08	112.08			0.74019	0.82093	NaN	1	0	Median	31222000	18021000	13201000	657	708	626	1358	3225;3226;3227;3228	3225		4	9606
AILTESENK	1	0	Unmodified	1003.5186	0.51858998	1211	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	2	0		1															11.118	11.118	2	0.028102	3299	DP690-2	74.301	34.234			0.92203	0.91552	NaN	1	0	Median	3291600	1677500	1614200	658	1211	627	1359	3229	3229		1	9606
AILVDLEPGTMDSVR	0	1	Oxidation (M)	1630.8236	0.82362212	406;2017;1217	P07437;Q9BVA1;Q13885;Q13509	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	1	0	9.8	4.07					2	1	1	1	1				1	1	1	1	18.232	18.232	2	2.1048E-10	12858	DP690-13	212.09	143.24			0.90785	1.0483	9.8519	8	0	Median	4801500000	2445600000	2356000000	659	406;2017;1217	628	1360;1361;1362;1363;1364;1365;1366;1367;1368;1369	3230;3231;3232;3233;3234;3235;3236;3237;3238;3239;3240;3241;3242;3243;3244;3245;3246;3247;3248;3249;3250;3251;3252;3253;3254;3255;3256;3257;3258;3259;3260;3261;3262;3263;3264;3265;3266;3267;3268;3269;3270;3271	3232	440	42	9606
AILVDLEPGTMDSVR	0	1	Unmodified	1614.8287	0.8287075	406;2017;1217	P07437;Q9BVA1;Q13885;Q13509	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	9	4					1								1				19.468	19.468	2	1.181E-14	13542	DP690-5	223.87	173.4			0.9394	0.97125	7.5303	2	0	Median	1902199999.9999998	969920000	932240000	660	406;2017;1217	628	1370;1371	3272;3273;3274;3275;3276;3277;3278;3279	3279		8	9606
AILVVFANK	1	0	Unmodified	973.59605	0.59605244	706	P40616	ARL1	ADP-ribosylation factor-like protein 1	yes	yes	0	0	0	8	0								1									17.731	17.731	2	0.0011765	11071	DP690-8	123.99	85.197			0.90947	1.0245	NaN	1	0	Median	11388000	6008800	5378900	661	706	629	1372	3280;3281;3282;3283	3281		4	9606
AIMAQLPQEQK	1	0	Oxidation (M)	1271.6544	0.65437195	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	1	0	7	4			1								1						13.088	13.088	2	0.00075848	6639	DP690-11	114.89	77.083			0.77785	0.94285	NaN	1	0	Median	74214000	49855000	24359000	662	657	630	1373;1374	3284;3285	3284	925	2	9606
AIMAQLPQEQK	1	0	Unmodified	1255.6595	0.65945733	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											1						14.433	14.433	2	8.745E-05	8563	DP690-11	146.79	114.03			0.65158	0.78539	NaN	1	0	Median	90376000	51103000	39273000	663	657	630	1375	3286;3287;3288	3286		3	9606
AIMEMPSFYSHGLPR	0	1	2 Oxidation (M)	1766.812	0.81201158	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	2	0	10.3	0.943									1		2						14.874	14.874	2;3	3.404E-05	9228	DP690-11	122.1	95.555			0.74927	0.82795	6.4324	3	0	Plateau	376800000	209550000	167250000	664	897	631	1376;1377;1378	3289;3290;3291;3292;3293;3294;3295;3296	3294	1381;1382	8	9606
AIMEMPSFYSHGLPR	0	1	Oxidation (M)	1750.8171	0.81709696	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	10.5	0.866									1		3						16.393	16.393	3	4.7277E-06	11138	DP690-11	127.79	95.879			0.66228	0.77746	6.0114	3	0	Median	613140000	394620000	218530000	665	897	631	1379;1380;1381;1382	3297;3298;3299;3300;3301;3302	3299	1381;1382	4	9606
AIMEMPSFYSHGLPR	0	1	Unmodified	1734.8222	0.82218234	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						18.188	18.188	3	4.0472E-07	13949	DP690-11	182.37	149.89			0.71852	0.78502	NaN	1	0	Median	373100000	216430000	156670000	666	897	631	1383	3303;3304;3305;3306;3307	3303		5	9606
AIMTYVSSFYHAFSGAQK	1	0	Oxidation (M)	2022.9509	0.9509479	476;186	P12814;O43707	ACTN1;ACTN4	Alpha-actinin-1;Alpha-actinin-4	no	no	0	1	0	8.33	3.77			1								2						19.482	19.482	2;3	0.00026697	15939	DP690-11	97.291	85.792			0.71855	0.86927	NaN	1	0	Median	61231000	35882000	25349000	667	476;186	632	1384;1385;1386	3308;3309;3310	3308	199	3	9606
AIMTYVSSFYHAFSGAQK	1	0	Unmodified	2006.956	0.95603328	476;186	P12814;O43707	ACTN1;ACTN4	Alpha-actinin-1;Alpha-actinin-4	no	no	0	0	0	11	0											3						21.168	21.168	2;3	8.0262E-05	18177	DP690-11	111.22	111.22			1.0243	1.2522	3.9028	2	0	Median	73738000	34752000	38986000	668	476;186	632	1387;1388;1389	3311;3312;3313;3314;3315;3316;3317	3315		7	9606
AIMYEETTYSK	1	0	Oxidation (M)	1350.6013	0.60133333	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	1	0	6.5	3.5			1							1							13.175	13.175	2	0.00015833	6868	DP690-10	131.11	105.04			0.87942	1.0035	8.4096	2	0	Median	90469000	51670000	38798000	669	858	633	1390;1391	3318;3319;3320;3321;3322;3323	3318	1302	6	9606
AINCATSGVVGLVNCLR	0	1	Unmodified	1802.9131	0.91312261	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															19.945	19.945	2	1.4604E-08	13483	DP690-2	178.1	141.25			0.82164	0.85948	NaN	1	0	Median	8115200	4812000	3303300	670	789	634	1392	3324;3325;3326;3327	3324		4	9606
AINGPTSASGDDISK	1	0	Unmodified	1431.6842	0.68415175	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	11.5	0.5											1	1					12.207	12.207	2	1.2178E-05	5177	DP690-11	150.51	88.048			0.88205	1.0402	NaN	1	0	Median	127730000	73586000	54148000	671	829	635	1393;1394	3328;3329;3330;3331	3328		4	9606
AINILLEGNSDTTSWETVGCK	1	0	Unmodified	2307.1053	0.10527629	1439	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	11	0											1						20.253	20.253	2	0.00652	16999	DP690-11	97.767	69.47			NaN	NaN	NaN	0	0	Median	6839100	6839100	0	672	1439	636	1395	3332;3333	3332		2	9606
AINQIAAALFTIHK	1	0	Unmodified	1509.8667	0.86674799	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	5.67	3.77			2								1						19.972	19.972	3	1.3562E-05	15015	DP690-3	133.88	133.88			1.1449	1.2586	42.881	2	0	Median	239860000	141600000	98260000	673	2437	637	1396;1397;1398	3334;3335;3336;3337;3338;3339;3340;3341;3342;3343	3338		10	9606
AINQQTGAFVEISR	0	1	Unmodified	1532.7947	0.79470526	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	7	4			1								1						15.997	15.997	2	2.5977E-05	9911	DP690-3	174.42	131.87			0.98849	1.1337	44.285	2	0	Median	196770000	80552000	116220000	674	1798	638	1399;1400	3344;3345;3346;3347;3348;3349;3350	3348		7	9606
AINTLNGLR	0	1	Unmodified	970.55598	0.55597854	1346	Q15717;Q12926;P26378	ELAVL1;ELAVL2;ELAVL4	ELAV-like protein 1;ELAV-like protein 2;ELAV-like protein 4	yes	no	0	0	0	14	0														1			14.104	14.104	2	0.00075779	7607	DP690-14	135.77	62.15			0.7439	0.85673	NaN	1	0	Median	217510000	129930000	87583000	675	1346	639	1401	3351;3352;3353;3354	3352		4	9606
AIPLVLVSGNHDIGNTPTAETVEEFCR	0	1	Unmodified	2938.4495	0.44947114	1981	Q9BRF8	CPPED1	Serine/threonine-protein phosphatase CPPED1	yes	yes	0	0	0	6	0						1											19.878	19.878	3	0.0036059	13955	DP690-6	54.465	39.78			0.44021	0.49997	NaN	1	0	Median	4430600	2770400	1660300	676	1981	640	1402	3355	3355		1	9606
AIPQLQGYLR	0	1	Unmodified	1157.6557	0.65569258	1098	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	14	0														1			17.8	17.8	2	8.879E-05	12721	DP690-14	157.21	123.02			0.89003	1.0214	NaN	1	0	Median	233460000	129180000	104280000	677	1098	641	1403	3356;3357;3358;3359	3359		4	9606
AIPVSPSAVEEDEDEDGHTVVATAR	0	1	Unmodified	2593.2144	0.21436905	1132	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	10	0										1							16.131	16.131	3	0.00024862	11220	DP690-10	90.475	79.854			0.56879	0.71241	NaN	1	0	Median	46071000	26450000	19620000	678	1132	642	1404	3360	3360		1	9606
AIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAK	2	0	2 Oxidation (M)	4251.098	0.09802943	1330	Q15417	CNN3	Calponin-3	yes	yes	0	2	1	6	0						1											22.589	22.589	4	0.00099645	16939	DP690-6	49.937	49.937			0.85526	0.88414	NaN	1	0	Median	4696500	2551400	2145100	679	1330	643	1405	3361	3361	2069;2070	1	9606
AIQDAILEVLK	1	0	Unmodified	1211.7125	0.71253876	1591	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	3	0			1														22.102	22.102	2	0.00010876	17576	DP690-3	148.52	73.479			1.0838	1.138	NaN	1	0	Median	6029100	2737200	3292000	680	1591	644	1406	3362;3363;3364;3365	3362		4	9606
AIQDPAFSDGIR	0	1	Unmodified	1288.6412	0.64116473	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															15.893	15.893	2	0.00059607	8806	DP690-2	109.66	79.497			1.1689	1.2233	NaN	1	0	Median	6981100	3462100	3518900	681	1555	645	1407	3366;3367	3366		2	9606
AIQGGTSHHLGQNFSK	1	0	Unmodified	1680.8332	0.83321603	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	4.33	3.3		2							1								10.426	10.426	3;4	0.0001071	2509	DP690-2	110.97	73.959			1.1021	1.1972	10.302	3	0	Plateau	111400000	52759000	58639000	682	408	646	1408;1409;1410	3368;3369;3370;3371;3372	3369		5	9606
AIQINPAFADAHSNLASIHK	1	0	Unmodified	2117.1018	0.10178632	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	7	4			1								1						15.889	15.889	4	6.5365E-07	10696	DP690-11	133.32	133.32			0.62286	0.70201	NaN	1	0	Median	229330000	129320000	100010000	683	149	647	1411;1412	3373;3374;3375;3376;3377	3373		5	9606
AIQLEYSEAR	0	1	Unmodified	1178.5932	0.5931519	168	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	4	0				1													14.69	14.69	2	0.0043389	8126	DP690-4	91.584	13.32			1.5595	1.8177	NaN	1	0	Median	13007000	5027400	7979500	684	168	648	1413	3378;3379	3379		2	9606
AIQLNSNSVQALLLK	1	0	Unmodified	1610.9356	0.93555583	2363	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	12	0												1					20.346	20.346	2	1.143E-05	16334	DP690-12	139.76	112.43			0.8698	1.0457	NaN	1	0	Median	19883000	10354000	9529000	685	2363	649	1414	3380;3381;3382;3383	3381		4	9606
AIQPQAAQGPAAVQQK	1	0	Unmodified	1604.8635	0.86345352	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	9.5	0.5									1	1							11.871	11.871	2	1.723E-07	5056	DP690-10	172.88	172.88			0.57513	0.71064	0.67785	2	0	Median	36932000	20547000	16385000	686	1891	650	1415;1416	3384;3385;3386;3387;3388;3389;3390	3386		7	9606
AIRPQIDLK	1	1	Unmodified	1052.6342	0.63422886	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.33	0.471									2	1							12.938	12.938	2;3	0.0031612	5728	DP690-9	131.22	86.242			0.6913	0.82386	6.8229	3	0	Plateau	204200000	121220000	82979000	687	1046	651	1417;1418;1419	3391;3392;3393;3394;3395;3396	3393		6	9606
AIRPQIDLKR	1	2	Unmodified	1208.7353	0.73533988	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	2	9	0									1								11.496	11.496	3	0.0012774	3911	DP690-9	98.943	72.156			0.26797	0.28678	NaN	1	0	Median	35059000	25456000	9602500	688	1046	652	1420	3397;3398	3397		2	9606
AISHEHSPSDLEAHFVPLVK	1	0	Unmodified	2212.1277	0.12766671	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	8	4				1								1					15.466	15.466	4	1.7356E-10	9258	DP690-4	156.29	136.71			0.99869	1.0695	61.845	2	0	Median	455980000	222390000	233580000	689	624	653	1421;1422	3399;3400;3401;3402;3403;3404	3404		6	9606
AISKDHLYGTLDPNTR	1	1	Unmodified	1799.9166	0.91661131	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								13.285	13.285	3	0.0085985	6261	DP690-9	98.421	62.314			NaN	NaN	NaN	0	0	Median	7865600	7865600	0	690	1264	654	1423	3405;3406	3406		2	9606
AISSASSPQSPGDALR	0	1	Unmodified	1542.7638	0.76379906	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	9.67	0.943									2		1						13.358	13.358	2	0.0034968	7035	DP690-11	138.2	87.753			NaN	NaN	NaN	0	0	Median	37998000	37998000	0	691	1889	655	1424;1425;1426	3407;3408;3409;3410	3407		4	9606
AISSTEAVLNNR	0	1	Unmodified	1273.6626	0.66262845	2307	Q9P2N5	RBM27	RNA-binding protein 27	no	no	0	0	0	11	0											1						13.722	13.722	2	0.062642	7509	DP690-11	103.55	29.245			NaN	NaN	NaN	0	0	Median	0	0	0	692	2307	656	1427	3411	3411		1	9606
AITFFTEDDKPLLR	1	1	Unmodified	1664.8774	0.87737225	2443	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	1	12	0												1					18.525	18.525	3	1.972E-08	13859	DP690-12	196.02	131.08			0.75655	0.88844	NaN	1	0	Median	97678000	54255000	43423000	693	2443	657	1428	3412;3413;3414;3415	3412		4	9606
AITFLQSATR	0	1	Unmodified	1106.6084	0.60840804	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	14	0														1			16.428	16.428	2	0.00044316	10866	DP690-14	120.31	40.593			0.9206	1.0922	NaN	1	0	Median	120150000	59637000	60513000	694	662	658	1429	3416;3417;3418;3419	3416		4	9606
AITGASLADIMAK	1	0	Oxidation (M)	1276.6697	0.66968766	1059	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	0	15	0															1		16.098	16.098	2	0.00020542	10148	DP690-15	140.78	95.757			0.9309	0.9956	NaN	1	0	Median	332890000	168850000	164040000	695	1059	659	1430	3420;3421;3422;3423	3421	1655	4	9606
AITGASLADIMAK	1	0	Unmodified	1260.6748	0.67477304	1059	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	11	4							1								1		18.8	18.8	2	0.0050136	13138	DP690-7	84.31	59.967			0.87819	0.98506	15.162	2	0	Median	12437000	6917600	5519800	696	1059	659	1431;1432	3424;3425	3425		2	9606
AITHLNNNFMFGQK	1	0	Oxidation (M)	1649.7984	0.79841043	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	1	0	12.8	1.3												3			1		14.67	14.67	2;3	5.8267E-05	8453	DP690-12	120.59	95.467			0.85138	0.94671	12.381	2	0	Median	574400000	254780000	319620000	697	494	660	1433;1434;1435;1436	3426;3427;3428;3429;3430;3431	3426	624	6	9606
AITHLNNNFMFGQK	1	0	Unmodified	1633.8035	0.8034958	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	12	0												2					15.93	15.93	2;3	3.3973E-09	10260	DP690-12	203.03	163.09			1.0195	1.1575	23.932	2	0	Median	389450000	187190000	202270000	698	494	660	1437;1438	3432;3433;3434;3435;3436;3437;3438	3437		7	9606
AITIAGIPQSIIECVK	1	0	Unmodified	1711.9542	0.95424237	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	10	4						1								1			21.487	21.487	2	3.7112E-07	17478	DP690-14	165.35	129.86			0.87597	1.0043	10.405	2	0	Median	98179000	50243000	47936000	699	1326	661	1439;1440	3439;3440;3441;3442;3443	3440		5	9606
AITIAGVPQSVTECVK	1	0	Unmodified	1671.8866	0.88655673	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	10	4						1								1			17.734	17.734	2	1.492E-07	12549	DP690-14	173.76	173.76			0.85827	0.97356	3.4846	2	0	Median	386200000	202030000	184170000	700	1325	662	1441;1442	3444;3445;3446;3447;3448;3449	3444		6	9606
AITIANQTNCPLYITK	1	0	Unmodified	1819.9502	0.95021962	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	8	4				1								1					17.171	17.171	2	1.7299E-18	11327	DP690-4	229.75	198.46			0.7263	0.82888	2.0228	2	0	Median	53659000	28609000	25050000	701	1359	663	1443;1444	3450;3451;3452;3453;3454;3455;3456;3457	3456		8	9606
AITIASQTNCPLYVTK	1	0	Unmodified	1778.9237	0.92367052	1260	Q14195	DPYSL3	Dihydropyrimidinase-related protein 3	yes	yes	0	0	0	6.33	4.03			1	1								1					16.684	16.684	2	3.4409E-22	10665	DP690-4	236.08	200.42			0.86181	0.93159	NaN	1	0	Median	43173000	29891000	13282000	702	1260	664	1445;1446;1447	3458;3459;3460;3461;3462;3463;3464;3465	3464		8	9606
AIVAIENPADVSVISSR	0	1	Unmodified	1739.9418	0.94176342	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	0	10	4						1								1			18.652	18.652	2	1.6256999999999998E-22	13734	DP690-14	241.15	241.15			0.90333	0.98819	21.809	2	0	Median	1571299999.9999998	827220000	744130000	703	428	665	1448;1449	3466;3467;3468;3469;3470;3471;3472;3473	3468		8	9606
AIVDCGFEHPSEVQHECIPQAILGMDVLCQAK	1	0	Oxidation (M)	3666.6939	0.69389364	63;1237	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	no	no	0	1	0	13	0													1				18.945	18.945	4	6.2024E-09	14026	DP690-13	117.03	110.75			0.87033	1.0045	NaN	1	0	Median	78536000	38470000	40066000	704	63;1237	666	1450	3474;3475	3474	68	2	9606
AIVDGNLK	1	0	Unmodified	828.47052	0.47051757	549;1270;250	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	10	0										3							12.625	12.625	2	0.049845	6094	DP690-10	114.72	37.874			NaN	NaN	NaN	0	0	Median	0	0	0	705	549;250;1270	667	1451;1452;1453	3476;3477;3478	3477		3	9606
AIVDLTGL	0	0	Unmodified	800.46437	0.46436956	1172	Q12933	TRAF2	TNF receptor-associated factor 2	yes	yes	0	0	0	4	0				1													22.057	22.057	1	0.028533	16907	DP690-4	89.903	52.809			NaN	NaN	NaN	0	0	Median	0	0	0	706	1172	668	1454	3479	3479		1	9606
AIVFVVDSAAFQR	0	1	Unmodified	1421.7667	0.76669959	2502	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	15	0															1		19.773	19.773	2	0.0021272	15026	DP690-15	116.52	116.52			1.0163	1.1855	NaN	1	0	Median	3623400	1872400	1751000	707	2502	669	1455	3480;3481	3481		2	9606
AIVHDNKDGTYAVTYIPDK	2	0	Unmodified	2119.0586	0.058584096	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										1							14.307	14.307	3	0.0067515	8446	DP690-10	96.561	68.861			NaN	NaN	NaN	0	0	Median	122050000	0	122050000	708	250	670	1456	3482	3482		1	9606
AKDLIVTPATILK	2	0	Unmodified	1381.8545	0.85445197	888	P54687	BCAT1	Branched-chain-amino-acid aminotransferase, cytosolic	yes	yes	0	0	1	6	0						1											16.933	16.933	2	0.0067334	10451	DP690-6	94.402	60.658			0.7201	0.74441	NaN	1	0	Median	8054400	4251900	3802400	709	888	671	1457	3483;3484;3485	3484		3	9606
AKDLQDELAGNSEQR	1	1	Unmodified	1672.8016	0.80164113	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	1	10	0										1							13.396	13.396	3	0.0020573	7169	DP690-10	125.39	70.576			NaN	NaN	NaN	0	0	Median	90831000	90831000	0	710	2424	672	1458	3486	3486		1	9606
AKDPFAHLPK	2	0	Unmodified	1122.6186	0.61857879	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	9	4					1								1				12.091	12.091	3	0.012475	4594	DP690-13	77.288	54.726			2.0568	2.3056	NaN	1	0	Median	66441000	23021000	43420000	711	598	673	1459;1460	3487;3488;3489;3490;3491	3489		5	9606
AKEDIVTEQIDFSAAR	1	1	Unmodified	1791.9003	0.90029254	2438	Q9Y2D5	AKAP2	A-kinase anchor protein 2	yes	yes	0	0	1	10.5	0.5										1	1						16.388	16.388	3	7.6736E-05	11497	DP690-11	117.53	94.303			1.1836	1.3852	20.863	2	0	Median	318680000	134080000	184600000	712	2438	674	1461;1462	3492;3493	3493		2	9606
AKEEEGVPDEEGWVK	2	0	Unmodified	1700.7893	0.78934511	2460	Q9Y3A4;Q9NSQ0	RRP7A;RRP7BP	Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B	yes	no	0	0	1	14	0														1			14.285	14.285	2	3.6992E-15	7937	DP690-14	258.23	200.88			0.49937	0.56091	NaN	1	0	Median	24970000	15893000	9077300	713	2460	675	1463	3494;3495;3496;3497	3496		4	9606
AKEFTNVYIK	2	0	Unmodified	1211.655	0.65502388	471	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	1	12	0												1					13.293	13.293	2	0.012346	6567	DP690-12	94.309	54.762			1.0407	1.1893	NaN	1	0	Median	69062000	35375000	33688000	714	471	676	1464	3498;3499	3498		2	9606
AKELLGQGLLLR	1	1	Unmodified	1309.8082	0.80817048	18	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	1	11	0											1						16.858	16.858	3	0.026636	12177	DP690-11	57.106	37.65			0.98458	1.2189	NaN	1	0	Median	23915000	12471000	11444000	715	18	677	1465	3500;3501	3501		2	9606
AKENDENCGPTTTVFVGNISEK	2	0	Unmodified	2409.1118	0.11181823	803	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	1	11	0											1						15.138	15.138	3	6.1532E-10	9552	DP690-11	146.34	127.39			0.90635	1.0487	NaN	1	0	Median	81653000	46391000	35262000	716	803	678	1466	3502;3503;3504;3505;3506	3502		5	9606
AKFEELNMDLFR	1	1	Unmodified	1511.7442	0.74424959	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	8	4				1								1					18.886	18.886	3	0.052147	13447	DP690-4	38.769	8.4375			1.148	1.3914	39.797	2	0	Median	33126000	17458000	15668000	717	462	679	1467;1468	3507;3508;3509	3508		3	9606
AKFEELNMDLFR	1	1	Oxidation (M)	1527.7392	0.73916421	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	1	1	4	0				1													17.081	17.081	3	4.5528E-05	11231	DP690-4	124.38	89.991			1.5387	1.7549	NaN	1	0	Median	122170000	48181000	73993000	718	462	679	1469	3510;3511;3512;3513	3513	539	4	9606
AKHDELTYF	1	0	Unmodified	1122.5346	0.53457439	364	P04080	CSTB	Cystatin-B	yes	yes	0	0	1	8	0								1									14.704	14.704	2	0.0075232	7870	DP690-8	115.49	82.744			0.83207	0.84449	NaN	1	0	Median	236390000	126910000	109480000	719	364	680	1470	3514;3515;3516;3517	3516		4	9606
AKIMLDNMR	1	1	Oxidation (M)	1106.5576	0.55763479	1148	Q0VDG4	SCRN3	Secernin-3	yes	yes	0	1	1	3	0			1														18.297	18.297	1	0.041275	13056	DP690-3	62.659	15.001			NaN	NaN	NaN	0	0	Median	3083100	3083100	0	720	1148	681	1471	3518	3518	1800	1	9606
AKLDVQFAGTAK	2	0	Unmodified	1247.6874	0.68738664	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	7	3.56		1							1	1							13.227	13.227	2	3.5658E-07	6894	DP690-10	203.03	176.34			0.90363	1.0846	6.9526	3	0	Median	259520000	128190000	131330000	721	1270	682	1472;1473;1474	3519;3520;3521;3522;3523;3524;3525;3526;3527;3528;3529	3522		11	9606
AKLEQLFQDEVAK	2	0	Unmodified	1517.809	0.80895834	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.67	0.471									1	2							16.895	16.895	2;3	1.6431E-07	12263	DP690-10	198.52	151.67			0.7695	0.87302	3.9222	3	0	Plateau	665620000	346710000	318910000	722	1319	683	1475;1476;1477	3530;3531;3532;3533;3534;3535;3536;3537;3538	3533		9	9606
AKNEILDEVISLSQVTPK	2	0	Unmodified	1983.0888	0.088821592	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	1	3	0			1														21.206	21.206	3	0.0010257	16707	DP690-3	78.441	62.676			0.69033	0.75043	NaN	1	0	Median	11949000	7869500	4079000	723	203	684	1478	3539	3539		1	9606
AKPFLSNSLGGQDDTR	1	1	Unmodified	1704.8431	0.84311201	8	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	1	11	0											1						13.799	13.799	3	0.0078005	7621	DP690-11	65.231	47.829			0.90837	1.0332	NaN	1	0	Median	148290000	79826000	68460000	724	8	685	1479	3540;3541;3542;3543	3541		4	9606
AKPSPAPPSTTTAPDASGPQK	2	0	Unmodified	2005.0116	0.011633904	709	P40855	PEX19	Peroxisomal biogenesis factor 19	yes	yes	0	0	1	10	4						1								1			10.493	10.493	3	0.00033905	2877	DP690-6	85.969	85.969			0.47106	0.48697	NaN	1	0	Median	13344000	11639000	1705400	725	709	686	1480;1481	3544;3545;3546;3547	3545		4	9606
AKVEFNIR	1	1	Unmodified	975.55016	0.55016488	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	13	0													1				12.738	12.738	2	0.024051	5765	DP690-13	143	75.023			0.89242	0.91389	NaN	1	0	Median	466840000	256880000	209960000	726	1678	687	1482	3548	3548		0	9606
ALAAAGYDVEK	1	0	Unmodified	1106.5608	0.56078914	504;456;1094	P10412;P16402;P22492;P16403;Q02539	HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1C;HIST1H1A	Histone H1.4;Histone H1.3;Histone H1t;Histone H1.2;Histone H1.1	no	no	0	0	0	14.5	0.5														1	1		13.543	13.543	2	0.00065588	6766	DP690-14	109.66	72.903			0.96619	1.0321	1.9093	2	0	Median	1513199999.9999998	743520000	769710000	727	456;504;1094	688	1483;1484	3549;3550;3551;3552;3553;3554;3555;3556	3550		8	9606
ALAAAGYDVEKNNSR	1	1	Unmodified	1577.7798	0.77978347	504;456;1094	P10412;P16402;P22492;P16403;Q02539	HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1C;HIST1H1A	Histone H1.4;Histone H1.3;Histone H1t;Histone H1.2;Histone H1.1	no	no	0	0	1	14.4	0.49														3	2		11.971	11.971	2;3	5.6355E-15	4694	DP690-14	254.07	178.51			0.95358	1.1291	7.2624	3	0	Median	123970000	60499000	63468000	728	456;504;1094	689	1485;1486;1487;1488;1489	3557;3558;3559;3560;3561;3562;3563;3564;3565	3559		9	9606
ALAAGGVGSIVR	0	1	Unmodified	1069.6244	0.62439245	159	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	yes	yes	0	0	0	16	0																1	14.94	14.94	2	0.0013173	8436	DP690-16	102.06	54.404			0.86232	0.95255	NaN	1	0	Median	91039000	47730000	43309000	729	159	690	1490	3566;3567;3568	3566		3	9606
ALAAPAAEEKEEAR	1	1	Unmodified	1454.7365	0.73652168	1086	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	1	10	4						1								1			10.614	10.614	3	3.1946E-05	2959	DP690-14	157.03	127.39			0.59941	0.73949	NaN	1	0	Median	55565000	34047000	21517000	730	1086	691	1491;1492	3569;3570;3571;3572	3570		4	9606
ALAAPAAEEKEEAREK	2	1	Unmodified	1711.8741	0.87407779	1086	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	2	14	0														2			10.37	10.37	3;4	7.6929E-06	2624	DP690-14	128.35	102.15			0.85189	1.0253	20.516	2	0	Median	37255000	19797000	17458000	731	1086	692	1493;1494	3573;3574;3575;3576;3577	3576		5	9606
ALAAVPSAGSVQR	0	1	Unmodified	1225.6779	0.67788459	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							13.553	13.553	2	8.8496E-05	7313	DP690-10	136.02	56.533			0.76443	0.93382	NaN	1	0	Median	159210000	87867000	71340000	732	1254	693	1495	3578	3578		1	9606
ALADDDFLTVTGK	1	0	Unmodified	1364.6824	0.68236084	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	11	0											1						18.56	18.56	2	0.028805	14670	DP690-11	90.685	45.549			NaN	NaN	NaN	0	0	Median	47334000	0	47334000	733	651	694	1496	3579;3580	3580		2	9606
ALAEGVSASLHTLLGDPCPMLESPGAPCR	0	1	Oxidation (M)	3021.4358	0.43581168	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	1	0	3	0			1														20.581	20.581	3	3.2359E-08	15834	DP690-3	132.94	118.54			0.56996	0.60021	NaN	1	0	Median	113690000	68420000	45272000	734	2316	695	1497	3581;3582;3583;3584	3582	2758	4	9606
ALAELFGLLVK	1	0	Unmodified	1172.7169	0.71689585	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															23.59	23.59	2	0.0020702	17241	DP690-2	97.431	97.431			1.2076	1.1866	NaN	1	0	Median	1205900	545630	660300	735	1555	696	1498	3585;3586;3587;3588	3587		4	9606
ALAETSYVK	1	0	Unmodified	980.51786	0.51786169	739	P43358	MAGEA4	Melanoma-associated antigen 4	no	no	0	0	0	10	4						1								1			12.58	12.58	2	0.0016054	5073	DP690-6	119.29	86.82			0.95904	1.0928	5.9887	2	0	Median	192600000	95365000	97238000	736	739	697	1499;1500	3589;3590;3591;3592;3593	3592		5	9606
ALAEYVVQQEGAK	1	0	Unmodified	1404.7249	0.72489436	1751	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	yes	yes	0	0	0	13	0													1				15.201	15.201	2	0.00010445	9115	DP690-13	152.54	126.48			0.70521	0.81646	NaN	1	0	Median	44685000	25884000	18801000	737	1751	698	1501	3594;3595	3595		2	9606
ALALDLGSPAALR	0	1	Unmodified	1266.7296	0.7295858	1725	Q8TER5	ARHGEF40	Rho guanine nucleotide exchange factor 40	yes	yes	0	0	0	2	0		1															18.829	18.829	2	0.00066802	12243	DP690-2	106.88	67.858			1.0178	1.0408	NaN	1	0	Median	2306100	962130	1343900	738	1725	699	1502	3596;3597;3598;3599	3596		4	9606
ALANSLACQGK	1	0	Unmodified	1131.5706	0.57064232	363	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	6	0						2											11.947	11.947	2	6.0072E-06	4430	DP690-6	195.05	124.23			1.3932	1.5956	NaN	1	0	Median	20238000	5951100	14287000	739	363	700	1503;1504	3600;3601;3602;3603;3604	3601		5	9606
ALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKK	2	0	Unmodified	3936.0163	0.016348711	383	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	1	16	0																1	19.447	19.447	3	4.5152E-09	14050	DP690-16	80.87	66.316			NaN	NaN	NaN	0	0	Median	833620	833620	0	740	383	701	1505	3605;3606;3607	3606		3	9606
ALAPLLLAFVTKPNSALESCSFAR	1	1	Unmodified	2575.3832	0.38322947	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	1	12	0												1					22.887	22.887	3	2.1096E-15	19233	DP690-12	162.39	143.44			0.73767	0.94364	NaN	1	0	Median	33163000	18855000	14308000	741	750	702	1506	3608;3609;3610;3611;3612;3613;3614	3608		7	9606
ALAPTWEQLALGLEHSETVK	1	0	Unmodified	2192.1477	0.14773345	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	5	0					1												21.169	21.169	3	1.3631E-23	15823	DP690-5	221.47	221.47			1.45	1.4452	NaN	1	0	Median	65407000	23752000	41655000	742	1675	703	1507	3615;3616;3617;3618	3617		4	9606
ALAQEDQGAGEVER	0	1	Unmodified	1471.6903	0.69029976	130	O15020	SPTBN2	Spectrin beta chain, non-erythrocytic 2	yes	yes	0	0	0	10	0										1							11.994	11.994	2	0.0032811	5113	DP690-10	143	88.456			NaN	NaN	NaN	0	0	Median	0	0	0	743	130	704	1508	3619	3619		1	9606
ALASGTEASSTDPGAPGGPGGAEGPMAK	1	0	Oxidation (M)	2456.1125	0.11254652	1369	Q16763	UBE2S	Ubiquitin-conjugating enzyme E2 S	yes	yes	0	1	0	15	0															1		13.062	13.062	2	1.3588E-11	6127	DP690-15	154.52	148.11			0.49794	0.58484	NaN	1	0	Median	8180400	5455700	2724700	744	1369	705	1509	3620;3621;3622;3623	3621	2116	4	9606
ALASNTSFFSGCSPIEEEAH	0	0	Unmodified	2152.9371	0.93714833	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	0	10	0										1							19.016	19.016	2	3.8204E-65	15254	DP690-10	276.95	248.98			NaN	NaN	NaN	0	0	Median	0	0	0	745	311	706	1510	3624;3625	3624		2	9606
ALATHPGISFYEEPR	0	1	Unmodified	1686.8366	0.83657007	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										1							15.352	15.352	3	2.7398E-05	10053	DP690-10	123.76	91.457			0.74744	0.90339	NaN	1	0	Median	182870000	102460000	80413000	746	1158	707	1511	3626;3627;3628	3628		3	9606
ALAVDAAFR	0	1	Unmodified	932.50797	0.50796571	15	A6NKF1	SAC3D1	SAC3 domain-containing protein 1	yes	yes	0	0	0	14	0														1			15.865	15.865	2	0.0058193	10133	DP690-14	96.492	47.069			0.72497	0.87914	NaN	1	0	Median	26202000	15163000	11040000	747	15	708	1512	3629;3630	3630		2	9606
ALAVGGLGSIIR	0	1	Unmodified	1125.687	0.68699271	1967	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	yes	yes	0	0	0	16	0																1	18.794	18.794	2	0.00011974	13257	DP690-16	133.99	84.457			0.96927	1.105	NaN	1	0	Median	38259000	20942000	17317000	748	1967	709	1513	3631;3632;3633;3634;3635;3636	3632		6	9606
ALAVHLLDLGLR	0	1	Unmodified	1289.782	0.78195573	1591	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	3	0			2														19.437	19.437	3	0.0068314	14390	DP690-3	91.701	61.562			NaN	NaN	NaN	0	0	Median	0	0	0	749	1591	710	1514;1515	3637;3638	3637		2	9606
ALAYFEQLK	1	0	Unmodified	1081.5808	0.5807963	182	O43592	XPOT	Exportin-T	yes	yes	0	0	0	3	0			1														17.545	17.545	2	0.0045512	11998	DP690-3	101.6	57.484			1.1364	1.2072	NaN	1	0	Median	30339000	15038000	15301000	750	182	711	1516	3639;3640;3641;3642	3639		4	9606
ALCDNVDTR	0	1	Unmodified	1062.4764	0.47640759	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	7	4			1								1						11.5	11.5	2	5.3051E-05	3959	DP690-3	176.09	128.43			0.875	1.0123	12	2	0	Median	82752000	44778000	37974000	751	797	712	1517;1518	3643;3644;3645;3646;3647	3647		5	9606
ALCEAAGCGSALLWPR	0	1	Acetyl (Protein N-term)	1772.8338	0.83380965	1381	Q2TAA2	IAH1	Isoamyl acetate-hydrolyzing esterase 1 homolog	yes	yes	1	0	0	7	0							1										23.455	23.455	2	0.033061	18622	DP690-7	75.416	34.827			NaN	NaN	NaN	0	0	Median	0	0	0	752	1381	713	1519	3648	3648		1	9606
ALCQITDSTMLQAIER	0	1	Oxidation (M)	1864.9023	0.90228315	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	1	0	3	0			1														17.522	17.522	2	0.0015532	11977	DP690-3	128.35	80.925			NaN	NaN	NaN	0	0	Median	9395400	0	9395400	753	2515	714	1520	3649;3650;3651	3650	2950	3	9606
ALDDFVLGSAR	0	1	Unmodified	1162.5982	0.59823728	226	O60831	PRAF2	PRA1 family protein 2	yes	yes	0	0	0	16	0																1	18.747	18.747	2	0.0018873	13194	DP690-16	99.013	41.966			0.70053	0.81543	NaN	1	0	Median	9960400	6259500	3700800	754	226	715	1521	3652;3653;3654	3654		3	9606
ALDEGDIALLK	1	0	Unmodified	1156.634	0.63395408	676	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	13	0													1				18.262	18.262	2	0.038679	13185	DP690-13	89.029	48.147			NaN	NaN	NaN	0	0	Median	7846600	0	7846600	755	676	716	1522	3655	3655		1	9606
ALDEYYDKHFTEFVPLR	1	1	Unmodified	2142.0422	0.042205751	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	1	12	0												1					18.373	18.373	4	0.072224	13756	DP690-12	50.04	16.358			NaN	NaN	NaN	0	0	Median	13463000	13463000	0	756	694	717	1523	3656	3656		1	9606
ALDFIASK	1	0	Unmodified	863.47527	0.4752686	476;186	P12814;Q08043;O43707	ACTN1;ACTN3;ACTN4	Alpha-actinin-1;Alpha-actinin-3;Alpha-actinin-4	no	no	0	0	0	11	0											1						15.767	15.767	2	0.046211	10544	DP690-11	98.458	23.861			NaN	NaN	NaN	0	0	Median	82681000	82681000	0	757	476;186	718	1524	3657;3658;3659	3659		3	9606
ALDGAFTEENR	0	1	Unmodified	1221.5626	0.56258006	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															14.365	14.365	2	0.0050347	6968	DP690-2	88.134	18.536			1.1774	1.2317	NaN	1	0	Median	7953200	3499800	4453400	758	2482	719	1525	3660;3661;3662;3663	3661		4	9606
ALDGEESDFEDYPMR	0	1	Oxidation (M)	1788.7149	0.71485954	1612	Q8IX90	SKA3	Spindle and kinetochore-associated protein 3	yes	yes	0	1	0	13	0													1				16.363	16.363	2	0.018112	10691	DP690-13	92.247	77.801			NaN	NaN	NaN	0	0	Median	7943700	7943700	0	759	1612	720	1526	3664	3664	2265	1	9606
ALDIAENEMPGLMR	0	1	2 Oxidation (M)	1590.7382	0.73817794	571	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	2	0	5	0					1												15.414	15.414	2	0.052205	8583	DP690-5	76.165	37.396			NaN	NaN	NaN	0	0	Median	11722000	11722000	0	760	571	721	1527	3665	3665		1	9606
ALDILQQHASHYK	1	0	Unmodified	1522.7892	0.78922595	129	O15014	ZNF609	Zinc finger protein 609	yes	yes	0	0	0	10	0										1							13.022	13.022	3	0.0020941	6632	DP690-10	81.239	81.239			1.0249	1.2658	NaN	1	0	Median	80124000	45556000	34568000	761	129	722	1528	3666	3666		1	9606
ALDLFSDNAPPPELLEIINEDIAK	1	0	Unmodified	2636.3585	0.35851409	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	9	4					1								1				25.862	25.862	2	3.3896E-06	21330	DP690-5	130.64	130.64			0.89364	0.92795	49.049	2	0	Median	13278000	8124100	5153800	762	1318	723	1529;1530	3667;3668;3669;3670;3671;3672	3671		6	9606
ALDLFSDNAPPPELLEIINEDIAKR	1	1	Unmodified	2792.4596	0.45962512	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	1	13	0													1				24.248	24.248	3	2.8691E-07	20523	DP690-13	139.69	139.69			0.53556	0.63964	NaN	1	0	Median	7314500	4737500	2577000	763	1318	724	1531	3673;3674;3675;3676	3675		4	9606
ALDMSYDHKPEDEVELAR	1	1	Oxidation (M)	2132.9684	0.96844846	152	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	1	1	4	0				1													13.874	13.874	4	0.0047462	7054	DP690-4	66.022	51.718			1.0322	1.1773	NaN	1	0	Median	20293000	10616000	9677000	764	152	725	1532	3677;3678	3678	168	2	9606
ALDQSDNDMSAVYR	0	1	Oxidation (M)	1599.6835	0.68349983	1392	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	1	0	12	0												2					12.978	12.978	2	0.0042344	6196	DP690-12	114.86	71.42			NaN	NaN	NaN	0	0	Median	8306200	8306200	0	765	1392	726	1533;1534	3679;3680;3681	3680	2130	3	9606
ALDTMNFDVIK	1	0	Unmodified	1265.6326	0.63257388	471	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	11	0											1						19.076	19.076	2	0.0093976	15281	DP690-11	110.14	63.054			NaN	NaN	NaN	0	0	Median	0	0	0	766	471	727	1535	3682	3682		1	9606
ALDVGSGSGILTACFAR	0	1	Unmodified	1693.8458	0.84575455	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	7	0							1										19.518	19.518	2	1.2338E-22	14024	DP690-7	253.97	224.23			0.91596	1.0516	NaN	1	0	Median	18092000	9256800	8835500	767	557	728	1536	3683;3684	3684		2	9606
ALEATTEHIR	0	1	Unmodified	1139.5935	0.59348625	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															10.788	10.788	3	4.1984E-05	2937	DP690-2	117.53	89.513			1.6484	1.6853	NaN	1	0	Median	2395000	885960	1509100	768	2482	729	1537	3685;3686;3687	3686		3	9606
ALECFCQAASEVGKEEFLDR	1	1	Unmodified	2358.062	0.062031269	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	1	10	0										1							19.062	19.062	3	0.0075721	15455	DP690-10	90.581	56.689			NaN	NaN	NaN	0	0	Median	26802000	26802000	0	769	1156	730	1538	3688	3688		1	9606
ALEDAFLAIDAK	1	0	Unmodified	1275.6711	0.67106787	152	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	4	0				2													20.045	20.045	2	0.004641	14730	DP690-4	115.23	48.664			NaN	NaN	NaN	0	0	Median	0	0	0	770	152	731	1539;1540	3689;3690	3689		2	9606
ALEDAQAVNEQLSSER	0	1	Unmodified	1758.8384	0.83842057	2412	Q9UPN4	CEP131	Centrosomal protein of 131 kDa	yes	yes	0	0	0	11	0											2						15.572	15.572	2	5.4899E-08	10253	DP690-11	174.05	81.438			NaN	NaN	NaN	0	0	Median	7905200	7905200	0	771	2412	732	1541;1542	3691;3692	3691		2	9606
ALEDFLASLR	0	1	Unmodified	1133.6081	0.60807369	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9.5	0.5									1	1							22.265	22.265	2	0.00067415	19791	DP690-10	113.66	56.481			0.73852	0.92383	16.659	2	0	Median	12673000	7963400	4709800	772	1762	733	1543;1544	3693;3694;3695;3696;3697;3698;3699;3700	3693		8	9606
ALEDITASIAMAVIQQK	1	0	Oxidation (M)	1816.9604	0.96044996	911	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	1	0	3	0			1														23.1	23.1	2	0.019594	18732	DP690-3	103.91	70.024			NaN	NaN	NaN	0	0	Median	0	0	0	773	911	734	1545	3701	3701	1407	1	9606
ALEEAMEQK	1	0	Unmodified	1047.4907	0.49066067	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1															12.206	12.206	2	0.001883	4419	DP690-2	116.25	116.25			1.2037	1.2123	NaN	1	0	Median	10668000	4786600	5881700	774	668	735	1546	3702;3703	3702		2	9606
ALEEAMEQKAELER	1	1	Oxidation (M)	1661.7931	0.79305028	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	2	0		2															12.184	12.184	2;3	0.00022436	4354	DP690-2	106.32	80.341			1.1396	1.1218	11.474	2	0	Median	18343000	7431800	10911000	775	668	736	1547;1548	3704;3705;3706;3707;3708	3704	942	5	9606
ALEEANADLEQK	1	0	Unmodified	1329.6412	0.64122431	53	CON__Q7Z3Y8;Q7Z3Y8	KRT27	Keratin, type I cytoskeletal 27	yes	no	0	0	0	8	0								1									13.06	13.06	2	0.040053	5872	DP690-8	88.496	32.965		+	NaN	NaN	NaN	0	0	Median	975470	975470	0	776	53	737	1549	3709	3709		1	9606
ALEEANADLEVK	1	0	Unmodified	1300.6511	0.65106071	40;29	CON__P02533;P02533;CON__P08779;P08779	KRT14;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16	no	no	0	0	0	15	0															1		14.485	14.485	2	0.070591	8078	DP690-15	82.261	32.22		+	NaN	NaN	NaN	0	0	Median	0	0	0	777	29;40	738	1550	3710	3710		1	9606
ALEEANTELEVK	1	0	Unmodified	1344.6773	0.67727546	45	CON__Q04695;Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	13	0													1				14.566	14.566	2	2.7662E-05	8087	DP690-13	188.04	188.04		+	0.83874	0.93347	NaN	1	0	Median	205730000	106670000	99055000	778	45	739	1551	3711;3712;3713;3714	3711		4	9606
ALEEGDGSVSGSSPR	0	1	Unmodified	1446.6587	0.65866529	1654	Q8N3X1	FNBP4	Formin-binding protein 4	yes	yes	0	0	0	10	0										1							11.602	11.602	2	1.277E-06	4517	DP690-10	181.31	162.71			0.84322	1.0517	NaN	1	0	Median	25697000	13602000	12094000	779	1654	740	1552	3715	3715		1	9606
ALEEQNELLSAELGGLR	0	1	Unmodified	1840.9531	0.95305639	781	P48681	NES	Nestin	yes	yes	0	0	0	11	1										1		1					20.318	20.318	2	1.2108E-27	17149	DP690-10	284.92	245.3			0.97241	1.153	NaN	1	0	Median	234630000	115490000	119140000	780	781	741	1553;1554	3716;3717;3718;3719;3720	3716		5	9606
ALEESESSQLISPPLAQAIR	0	1	Unmodified	2138.1219	0.12191263	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	11	0											1						19.362	19.362	2	2.7856E-43	15663	DP690-11	305.69	264.92			0.58797	0.70834	NaN	1	0	Median	24232000	15673000	8559000	781	723	742	1555	3721;3722;3723;3724;3725	3722		5	9606
ALEESNYELEGK	1	0	Unmodified	1380.6409	0.64088996	42;30	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	no	no	0	0	0	8.17	4.74	1	1		1	1	1	1	1	1			1	1		1	1	14.188	14.188	2	1.902E-11	5884	DP690-1	188.04	96.722		+	NaN	NaN	NaN	0	0	Median	918750000	918750000	0	782	42;30	743	1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566;1567	3726;3727;3728;3729;3730;3731;3732;3733;3734;3735;3736;3737;3738;3739;3740;3741;3742;3743;3744;3745;3746;3747;3748;3749	3727		24	9606
ALEFAPACHR	0	1	Unmodified	1170.5604	0.56041199	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	4	0				1													12.723	12.723	3	0.00014939	5542	DP690-4	99.688	81.629			1.2609	1.4578	NaN	1	0	Median	4178400	1797900	2380500	783	1946	744	1568	3750;3751	3751		2	9606
ALEFGEPVLLVGDTGCGK	1	0	Unmodified	1860.9291	0.92914983	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									2								20.871	20.871	2	0.001907	15985	DP690-9	83.692	83.692			1.0937	1.3597	NaN	1	0	Median	4374300	2050600	2323700	784	2217	745	1569;1570	3752;3753	3752		2	9606
ALEFLDQLLLQNIR	0	1	Unmodified	1684.9512	0.9512059	731	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	10	0										2							24.659	24.659	2	1.7249E-14	22686	DP690-10	224.75	162.8			NaN	NaN	NaN	0	0	Median	0	0	0	785	731	746	1571;1572	3754;3755	3754		2	9606
ALEHAFQLEHIMDLTR	0	1	Oxidation (M)	1938.9622	0.96218129	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	9	0									1								16.747	16.747	4	0.030686	10793	DP690-9	47.548	21.473			0.65331	0.78787	NaN	1	0	Median	33196000	20491000	12705000	786	1264	747	1573	3756;3757;3758	3757	1904	3	9606
ALEHAFQLEHIMDLTR	0	1	Unmodified	1922.9673	0.96726667	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								18.755	18.755	3	0.013616	13426	DP690-9	57.148	41.753			0.81922	1.0256	NaN	1	0	Median	4911500	3076500	1835000	787	1264	747	1574	3759	3759		1	9606
ALEHFTDLYDIK	1	0	Unmodified	1463.7296	0.72964538	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	2	0		1															17.633	17.633	3	0.0012543	10846	DP690-2	71.085	57.948			1.3187	1.3222	NaN	1	0	Median	4838400	2180000	2658400	788	1075	748	1575	3760;3761;3762;3763	3760		4	9606
ALEHFTDLYDIKR	1	1	Unmodified	1619.8308	0.83075641	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	7.33	3.77		1								2							15.945	15.945	3;4	4.2664E-05	10934	DP690-10	144.28	122.93			0.86252	1.0418	27.481	3	0	Plateau	366340000	188650000	177690000	789	1075	749	1576;1577;1578	3764;3765;3766;3767;3768	3764		5	9606
ALEHSALAINHK	1	0	Unmodified	1302.7044	0.70443369	516	P17812;Q9NRF8	CTPS1;CTPS2	CTP synthase 1;CTP synthase 2	yes	no	0	0	0	4	0				1													10.447	10.447	3	1.006E-10	2832	DP690-4	195.51	177.18			0.87503	0.89869	NaN	1	0	Median	305910000	162670000	143240000	790	516	750	1579	3769;3770;3771;3772	3772		4	9606
ALEHSALAINHKLEIK	2	0	Unmodified	1786.0101	0.010117761	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	1	4	0				1													13.105	13.105	4	0.013118	6018	DP690-4	56.768	45.906			0.98808	1.0272	NaN	1	0	Median	31707000	14704000	17003000	791	516	751	1580	3773;3774	3773		2	9606
ALELDSNLYR	0	1	Unmodified	1192.6088	0.60880197	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	6	4		1								1							16.98	16.98	2	1.7473E-05	10023	DP690-2	233.21	164.01			1.0106	1.0507	NaN	1	0	Median	145950000	114720000	31229000	792	668	752	1581;1582	3775;3776;3777;3778;3779;3780;3781;3782;3783;3784	3779		10	9606
ALELPPLVVEGIELDQLDLRR	0	2	Unmodified	2387.3424	0.34241052	2504	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	1	11	0											1						23.819	23.819	3	0.00014474	21537	DP690-11	100.39	100.39			0.90273	1.1128	NaN	1	0	Median	10943000	4699200	6243700	793	2504	753	1583	3785;3786;3787	3785		3	9606
ALELTGLK	1	0	Unmodified	843.50657	0.50656873	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11	0											3						15.828	15.828	2	0.0092875	10540	DP690-11	120.49	26.081			NaN	NaN	NaN	0	0	Median	186820000	0	186820000	794	534	754	1584;1585;1586	3788;3789;3790;3791	3788		4	9606
ALEPTGQSGEAVK	1	0	Unmodified	1285.6514	0.65139506	1757	Q8WX92	NELFB	Negative elongation factor B	yes	yes	0	0	0	8	4				1								1					11.21	11.21	2	0.00013891	3640	DP690-4	121.9	121.9			0.99715	1.1322	0.25056	2	0	Median	24897000	12109000	12789000	795	1757	755	1587;1588	3792;3793;3794;3795;3796;3797	3795		6	9606
ALEQKPDDAQYYCQR	1	1	Unmodified	1883.8472	0.84721111	2451	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	1	6	0						1											12.341	12.341	3	8.8707E-05	4886	DP690-6	116.58	96.812			0.77172	0.86488	NaN	1	0	Median	13367000	7213100	6154000	796	2451	756	1589	3798;3799	3799		2	9606
ALEQQVEEMK	1	0	Oxidation (M)	1219.5755	0.57545293	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															11.897	11.897	2	0.00031064	4049	DP690-2	129.42	60.223			1.1152	1.1264	NaN	1	0	Median	17667000	8550200	9116700	797	668	757	1590	3800;3801	3801	943	2	9606
ALEQQVEEMK	1	0	Unmodified	1203.5805	0.58053831	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1															14.386	14.386	2	6.8825E-05	6996	DP690-2	188.66	94.545			1.1048	1.1123	NaN	1	0	Median	9976900	4895000	5081800	798	668	757	1591	3802;3803	3803		2	9606
ALEQQVEEMKTQLEELEDELQATEDAK	2	0	Oxidation (M)	3162.4762	0.47619898	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	6	4		1								1							21.508	21.508	3	1.9906E-11	15211	DP690-2	146.72	140.35			1.0955	1.1373	NaN	1	0	Median	24209000	4787400	19422000	799	668	758	1592;1593	3804;3805;3806;3807;3808;3809;3810;3811;3812	3810	943	9	9606
ALESDMAPVLIMATNR	0	1	2 Oxidation (M)	1762.8594	0.8593557	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	2	0	13	0													1				16.506	16.506	2	0.04128	10693	DP690-13	58.781	28.169			0.84103	1.0375	NaN	1	0	Median	20332000	11071000	9260600	800	2427	759	1594	3813;3814	3813	2862;2863	2	9606
ALESDMAPVLIMATNR	0	1	Oxidation (M)	1746.8644	0.86444108	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	1	0	13	0													1				18.92	18.92	2	0.0047155	14133	DP690-13	83.137	61.506			0.85148	1.0454	NaN	1	0	Median	14526000	7247500	7278900	801	2427	759	1595	3815;3816	3815	2862;2863	2	9606
ALESDMAPVLIMATNR	0	1	Unmodified	1730.8695	0.86952646	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	13	0													1				20.782	20.782	2	0.00040548	16472	DP690-13	108.3	68.679			0.71757	0.87622	NaN	1	0	Median	11743000	6368500	5374100	802	2427	759	1596	3817	3817		1	9606
ALESGDVNTVWK	1	0	Unmodified	1317.6565	0.65648044	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	2	0		1															16.004	16.004	2	0.042476	8930	DP690-2	90.108	14.37			NaN	NaN	NaN	0	0	Median	0	0	0	803	766	760	1597	3818	3818		1	9606
ALESSIAPIVIFASNR	0	1	Unmodified	1686.9305	0.93047046	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	13	0													1				21.593	21.593	2	5.8442E-07	17481	DP690-13	152.96	117.42			0.80033	0.9653	NaN	1	0	Median	77976000	42303000	35673000	804	2431	761	1598	3819;3820;3821;3822	3822		4	9606
ALETHTYFER	0	1	Unmodified	1265.6041	0.60405094	46	CON__Q1RMK2			yes	yes	0	0	0	1	0	1																13.129	13.129	3	0.0037717	4951	DP690-1	104.05	74.274		+	NaN	NaN	NaN	0	0	Median	4367600	4367600	0	805	46	762	1599	3823;3824	3823		2	
ALEVAEYLTPVLK	1	0	Unmodified	1444.8177	0.81773211	2213	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	yes	yes	0	0	0	6	0						1											21.039	21.039	2	0.00025983	15214	DP690-6	116.23	96.99			0.79323	0.86415	NaN	1	0	Median	1675400	1031500	643840	806	2213	763	1600	3825;3826	3825		2	9606
ALEVSEDVK	1	0	Unmodified	988.50769	0.50769094	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	4	0				1													12.898	12.898	2	0.0011681	5836	DP690-4	124.08	52.203			0.7511	0.80095	NaN	1	0	Median	55159000	32286000	22873000	807	2405	764	1601	3827;3828	3828		2	9606
ALEYTIYNQELNETR	0	1	Unmodified	1855.8952	0.89520716	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							17.64	17.64	2	1.0693E-15	13375	DP690-10	235.49	186.31			0.90184	1.1187	NaN	1	0	Median	95152000	50900000	44252000	808	2424	765	1602	3829;3830;3831	3830		3	9606
ALFARPDLLLLDEPTNMLDVR	0	2	Oxidation (M)	2427.2832	0.28318108	2225	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	1	1	3	0			1														21.328	21.328	3	0.00037839	16753	DP690-3	89.483	76.162			0.69564	0.71962	NaN	1	0	Median	5656200	3233500	2422700	809	2225	766	1603	3832	3832	2705	1	9606
ALFGTDGIR	0	1	Unmodified	948.50288	0.50288033	2498	Q9Y5B8	NME7	Nucleoside diphosphate kinase 7	yes	yes	0	0	0	6	0						1											16.411	16.411	2	0.019758	9824	DP690-6	79.713	21.108			1.1487	1.3184	NaN	1	0	Median	9121700	4206200	4915500	810	2498	767	1604	3833;3834	3834		2	9606
ALFLIPR	0	1	Unmodified	828.52216	0.52215921	343	O95819;Q8N4C8;Q9UKE5	MAP4K4;MINK1;TNIK	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1;TRAF2 and NCK-interacting protein kinase	yes	no	0	0	0	10.3	0.471										2	1						18.591	18.591	2	0.0032113	14578	DP690-11	137.2	27.322			NaN	NaN	NaN	0	0	Median	4941700	4941700	0	811	343	768	1605;1606;1607	3835;3836;3837	3837		3	9606
ALFNAQFGSIFR	0	1	Unmodified	1369.7143	0.71427009	2135	Q9H857	NT5DC2	5'-nucleotidase domain-containing protein 2	yes	yes	0	0	0	4	0				1													21.405	21.405	2	0.042684	16276	DP690-4	90.05	35.069			NaN	NaN	NaN	0	0	Median	0	0	0	812	2135	769	1608	3838	3838		1	9606
ALFPGDSEIDQLFR	0	1	Unmodified	1606.7991	0.79912193	580	P24941;Q00526	CDK2;CDK3	Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	yes	no	0	0	0	10	4						1								1			22.647	22.647	2	0.00054919	18940	DP690-14	107.09	72.591			0.77866	0.91462	30.565	2	0	Median	23183000	12709000	10474000	813	580	770	1609;1610	3839;3840;3841	3839		3	9606
ALGALVDSCAPGLCPDWDSWDASKPVTNAR	1	1	Unmodified	3228.4968	0.49683204	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10.5	0.5										1	1						20.161	20.161	3	6.3031E-26	16915	DP690-10	190.24	177.15			0.6379	0.7388	NaN	1	0	Median	299770000	158960000	140810000	814	549	771	1611;1612	3842;3843;3844;3845;3846;3847;3848;3849;3850	3847		9	9606
ALGDLISATK	1	0	Unmodified	987.56006	0.56006086	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															16.837	16.837	2	0.0021131	9894	DP690-2	101.46	48.108			1.2502	1.2562	NaN	1	0	Median	7073100	2902400	4170700	815	2482	772	1613	3851;3852;3853;3854	3851		4	9606
ALGLDTGQQQDAQEFSK	1	0	Unmodified	1834.8697	0.86972069	1572	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	11	0											1						15.875	15.875	2	0.0038564	10667	DP690-11	137.95	70.695			NaN	NaN	NaN	0	0	Median	0	0	0	816	1572	773	1614	3855	3855		1	9606
ALGLEESLVQEGR	0	1	Unmodified	1399.7307	0.73070802	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								17.543	17.543	2	1.1474E-09	11796	DP690-9	246.86	154.62			0.8142	0.98555	NaN	1	0	Median	31128000	16673000	14454000	817	1048	774	1615	3856;3857;3858	3858		3	9606
ALGLGVEQLPVVFEDVVLHQATILPK	1	0	Unmodified	2784.579	0.57895239	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															25.338	25.338	3	4.2413E-05	18604	DP690-2	113.89	107.17			0.76169	0.76435	NaN	1	0	Median	5604900	3191400	2413500	818	789	775	1616	3859;3860;3861	3861		3	9606
ALGNSEEATMLQHR	0	1	Oxidation (M)	1571.7362	0.7362041	765	P46939	UTRN	Utrophin	yes	yes	0	1	0	9	0									1								11.549	11.549	3	0.066429	4043	DP690-9	65.043	39.129			NaN	NaN	NaN	0	0	Median	0	0	0	819	765	776	1617	3862	3862		1	9606
ALGQNPTNAEVLK	1	0	Unmodified	1353.7252	0.72522871	925	P60660;P14649	MYL6;MYL6B	Myosin light polypeptide 6;Myosin light chain 6B	yes	no	0	0	0	12	4								1								1	13.846	13.846	2	1.9495E-05	7029	DP690-16	180.66	139.54			0.81879	0.86691	19.517	2	0	Median	396790000	227180000	169610000	820	925	777	1618;1619	3863;3864;3865;3866;3867;3868;3869;3870	3866		8	9606
ALGTLVSHVTLR	0	1	Unmodified	1265.7456	0.74557022	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	6	4		1								1							15.75	15.75	3	0.00040499	10599	DP690-10	108.98	86.51			1.1037	1.2525	28.169	2	0	Median	151820000	78541000	73284000	821	1782	778	1620;1621	3871;3872;3873;3874;3875;3876	3871		6	9606
ALGTPNNEVWPEVESLQDYK	1	0	Unmodified	2288.0961	0.096091815	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	14	0														1			20.519	20.519	2	2.7956E-30	16195	DP690-14	235.38	199.06			0.75381	0.9162	NaN	1	0	Median	52604000	30150000	22453000	822	391	779	1622	3877;3878;3879;3880;3881	3879		5	9606
ALGTPNNEVWPEVESLQDYKNTFPK	2	0	Unmodified	2875.4028	0.40283852	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	14	0														1			20.208	20.208	3	0.00019481	15905	DP690-14	102.16	82.91			0.62184	0.69824	NaN	1	0	Median	27876000	17270000	10606000	823	391	780	1623	3882;3883;3884	3884		3	9606
ALHGEATNSMASDNQPEGMISESLDNLESMMPNK	1	0	4 Oxidation (M)	3711.5645	0.56445519	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	4	0	11	0											2						17.172	17.172	3	8.9534E-09	12645	DP690-11	119.47	117.24			1.0843	1.3208	NaN	1	0	Median	34947000	21149000	13799000	824	897	781	1624;1625	3885;3886;3887;3888;3889;3890;3891;3892	3890	1383;1384;1385;1386	8	9606
ALHGEATNSMASDNQPEGMISESLDNLESMMPNK	1	0	Oxidation (M)	3663.5797	0.57971132	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	11	0											1						22.404	22.404	3	0.015349	19765	DP690-11	64.718	48.825			NaN	NaN	NaN	0	0	Median	0	0	0	825	897	781	1626	3893	3893	1383;1384;1385;1386	1	9606
ALHQGDSLECTAMTVQILLK	1	0	Oxidation (M)	2243.129	0.12898862	107	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	1	0	6	0						1											19.72	19.72	3	0.019063	13781	DP690-6	75.608	35.594			NaN	NaN	NaN	0	0	Median	2701100	0	2701100	826	107	782	1627	3894	3894	118	1	9606
ALIAAQYSGAQVR	0	1	Unmodified	1346.7306	0.73064844	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	12.1	3.56					1				1				2	1	1	1	14.871	14.871	2	2.4398E-10	8442	DP690-13	246.93	145.21			0.98185	1.1419	10.787	5	0	Median	2032799999.9999998	1035899999.9999999	996960000	827	598	783	1628;1629;1630;1631;1632;1633;1634	3895;3896;3897;3898;3899;3900;3901;3902;3903;3904;3905;3906;3907;3908;3909;3910	3898		16	9606
ALIAGGGAPEIELALR	0	1	Unmodified	1549.8828	0.88279198	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	8	4				1								1					20.064	20.064	2	6.0013E-07	14803	DP690-4	151.79	131			1.1919	1.403	26.729	2	0	Median	36931000	16071000	20860000	828	827	784	1635;1636	3911;3912;3913;3914;3915;3916;3917	3917		7	9606
ALIEMEK	1	0	Unmodified	832.43644	0.43644025	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	12	0												1					13.942	13.942	2	0.076204	7466	DP690-12	97.068	7.3942			NaN	NaN	NaN	0	0	Median	93250000	93250000	0	829	1322	785	1637	3918	3918		1	9606
ALIERPSQNNIGIQTMECSLR	0	2	Oxidation (M)	2445.2104	0.21042684	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	1	1	10	0										1							15.305	15.305	3	0.0038953	9993	DP690-10	95.957	67.632			NaN	NaN	NaN	0	0	Median	48379000	48379000	0	830	1167	786	1638	3919;3920	3919	1815	2	9606
ALIESYQNLTR	0	1	Unmodified	1306.6881	0.68811492	1636	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	0	4	0				1													16.559	16.559	2	0.0024326	10617	DP690-4	94.297	36.05			0.9968	1.1493	NaN	1	0	Median	18484000	9851000	8633400	831	1636	787	1639	3921;3922	3921		2	9606
ALIGATNPADAPPGTIR	0	1	Unmodified	1633.8788	0.87876924	1191	Q13232	NME3	Nucleoside diphosphate kinase 3	yes	yes	0	0	0	16	0																1	15.803	15.803	2	1.8402E-12	9612	DP690-16	198.97	169.91			0.55009	0.63978	NaN	1	0	Median	11564000	6139100	5424600	832	1191	788	1640	3923;3924;3925;3926;3927	3926		5	9606
ALILEEIAIDCHNK	1	0	Unmodified	1637.8447	0.84469192	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	4	0				3													18.311	18.311	2;3	9.3002E-12	12678	DP690-4	179.67	109.23			NaN	NaN	NaN	0	0	Median	45190000	0	45190000	833	1784	789	1641;1642;1643	3928;3929;3930;3931	3929		4	9606
ALILEEIAIDCHNKETEQR	1	1	Unmodified	2281.1372	0.13724512	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	1	4	0				2													17.082	17.082	3;4	9.2058E-09	11236	DP690-4	166.48	118.56			NaN	NaN	NaN	0	0	Median	77252000	0	77252000	834	1784	790	1644;1645	3932;3933;3934;3935	3932		4	9606
ALILSPTR	0	1	Unmodified	869.53345	0.53345218	1721	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	12	0												1					14.353	14.353	2	0.068603	8002	DP690-12	89.752	0			NaN	NaN	NaN	0	0	Median	20204000	0	20204000	835	1721	791	1646	3936	3936		1	9606
ALINADELASDVAGAEALLDR	0	1	Unmodified	2126.0855	0.085527129	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							25.093	25.093	2	4.1893E-19	23263	DP690-10	188.06	167.63			0.77162	0.96364	NaN	1	0	Median	8141500	4416000	3725500	836	1236	792	1647	3937;3938;3939;3940;3941	3941		5	9606
ALIVEPSRELAEQTLNNIK	1	1	Unmodified	2137.1743	0.17428256	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	1	11	0											1						18.782	18.782	3	0.0065317	14927	DP690-11	59.579	28.346			1.0525	1.2784	NaN	1	0	Median	57948000	32566000	25382000	837	1768	793	1648	3942	3942		1	9606
ALIVGHCMPGPR	0	1	Oxidation (M)	1322.6587	0.65874582	1486	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	yes	yes	0	1	0	16	0																1	11.234	11.234	3	0.0056773	3786	DP690-16	73.841	35.82			0.94427	1.0982	NaN	1	0	Median	13073000	7744500	5328300	838	1486	794	1649	3943;3944;3945	3943	2172	3	9606
ALIVVQQGMTPSAK	1	0	Oxidation (M)	1457.7912	0.79119978	537	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	yes	yes	0	1	0	15	0															1		14.166	14.166	2	3.6121E-05	7644	DP690-15	175.33	175.33			0.65924	0.76811	NaN	1	0	Median	40971000	24072000	16899000	839	537	795	1650	3946;3947;3948;3949;3950	3948	686	5	9606
ALKDEEKMELQEIQLK	3	0	Oxidation (M)	1960.0187	0.018693117	398	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	1	2	15	0															4		15.457	15.457	2;3;4	9.1138E-07	9268	DP690-15	140.77	112.6			0.75338	0.82069	8.5523	2	0	Median	888580000	506910000	381670000	840	398	796	1651;1652;1653;1654	3951;3952;3953;3954;3955;3956;3957;3958;3959;3960;3961;3962;3963	3953	430	13	9606
ALKDFVASIDATYAK	2	0	Unmodified	1611.8508	0.85082315	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	8.17	3.76			2						1		2	1					19.336	19.336	2;3	8.3264E-06	14244	DP690-3	127.07	112.83			0.82468	0.90324	9.6317	5	0	Median	479230000	261310000	217910000	841	581	797	1655;1656;1657;1658;1659;1660	3964;3965;3966;3967;3968;3969;3970;3971;3972;3973;3974;3975;3976;3977;3978;3979;3980;3981	3975		18	9606
ALKDPNAFLFDHLLTLKPVK	3	0	Unmodified	2279.3042	0.30417452	1528	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	2	10	4						1								1			19.168	19.168	5	0.014907	14549	DP690-14	77.137	36.141			4.2012	4.1996	NaN	1	0	Median	41970000	38868000	3102200	842	1528	798	1661;1662	3982;3983;3984	3983		3	9606
ALKEEIGNVQLEK	2	0	Unmodified	1469.809	0.80895834	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	1	10	0										1							14.233	14.233	3	0.0047386	8364	DP690-10	74.133	44.918			0.6797	0.81535	NaN	1	0	Median	134940000	72874000	62069000	843	1570	799	1663	3985;3986;3987	3985		3	9606
ALKEENIQTLLINPNIATVQTSQGLADK	2	0	Unmodified	3021.6346	0.63462937	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	1	2	0		1															19.757	19.757	3	6.3311E-12	13288	DP690-2	147.86	129.95			1.0478	1.0877	NaN	1	0	Median	5305600	2309100	2996500	844	602	800	1664	3988;3989;3990;3991;3992	3990		5	9606
ALLAEGVILR	0	1	Unmodified	1053.6546	0.65462995	2470	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	15	0															1		18.239	18.239	2	0.042671	12967	DP690-15	66.692	16.085			0.89434	1.0347	NaN	1	0	Median	30269000	16242000	14027000	845	2470	801	1665	3993;3994	3994		2	9606
ALLAMYTNQAEQCR	0	1	Unmodified	1667.776	0.77596042	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11.7	0.471											1	2					16.679	16.679	2	3.2216E-14	11895	DP690-11	225.22	192.89			1.0344	1.2489	NaN	1	0	Median	94171000	45182000	48989000	846	288	802	1666;1667;1668	3995;3996;3997;3998;3999;4000;4001	3999		7	9606
ALLAMYTNQAEQCR	0	1	Oxidation (M)	1683.7709	0.77087505	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	1	0	11	0											2						15.458	15.458	2	1.4468E-05	10075	DP690-11	192.12	150.24			NaN	NaN	NaN	0	0	Median	0	0	0	847	288	802	1669;1670	4002;4003	4003	301	2	9606
ALLANALTSALR	0	1	Unmodified	1212.719	0.71902112	910	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	11.3	2.62									1	1					1		19.721	19.721	2	1.6132E-05	16349	DP690-10	191.45	191.45			0.87079	1.0757	10.337	3	0	Median	240640000	126060000	114570000	848	910	803	1671;1672;1673	4004;4005;4006;4007;4008;4009;4010;4011;4012;4013;4014	4004		11	9606
ALLANQDSGEVQQDPK	1	0	Unmodified	1711.8377	0.83769228	2177	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	yes	yes	0	0	0	4	0				1													13.106	13.106	2	4.1199E-07	6032	DP690-4	200.82	176.56			0.83317	0.89717	NaN	1	0	Median	6331800	3637000	2694800	849	2177	804	1674	4015;4016;4017;4018	4015		4	9606
ALLDASETTSTR	0	1	Unmodified	1263.6307	0.63065962	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	9.2	2.79				1					1	1	1	1					13.765	13.765	2	3.5506E-10	6816	DP690-9	219.8	175.43			0.90622	1.047	8.3008	5	0	Median	782910000	419170000	363740000	850	1269	805	1675;1676;1677;1678;1679	4019;4020;4021;4022;4023;4024;4025;4026;4027;4028;4029;4030;4031;4032;4033;4034;4035;4036	4035		18	9606
ALLDYGVTADAR	0	1	Unmodified	1263.6459	0.64591575	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	3	0			1														16.881	16.881	2	0.00012849	11147	DP690-3	134.68	107.89			1.0057	1.1608	NaN	1	0	Median	19912000	10451000	9460900	851	1076	806	1680	4037;4038;4039	4038		3	9606
ALLELQLEPEELYQTFQR	0	1	Unmodified	2219.1474	0.1473991	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	10	1									1		1						23.374	23.374	2	5.2263E-37	20981	DP690-11	290.1	271.46			0.74952	0.92273	NaN	1	0	Median	14109000	7444300	6664400	852	483	807	1681;1682	4040;4041;4042;4043;4044	4041		5	9606
ALLELVPWR	0	1	Unmodified	1095.6441	0.64406526	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								21.25	21.25	2	0.0027117	16364	DP690-9	109.01	78.846			0.86569	1.0844	NaN	1	0	Median	5549400	2885600	2663800	853	2411	808	1683	4045;4046;4047	4046		3	9606
ALLEMAEEK	1	0	Unmodified	1032.5161	0.51614714	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	11	0											1						15.551	15.551	2	0.0024164	10156	DP690-11	110.41	46.143			0.96594	1.155	NaN	1	0	Median	100250000	55202000	45047000	854	701	809	1684	4048;4049	4048		2	9606
ALLKDQQPGTFLLR	1	1	Unmodified	1598.9144	0.91442646	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	1	3	0			1														16.84	16.84	3	0.0021176	11118	DP690-3	80.96	53.022			0.7194	0.79787	NaN	1	0	Median	25681000	14804000	10876000	855	724	810	1685	4050;4051;4052	4052		3	9606
ALLLLLVGGVDQSPR	0	1	Unmodified	1549.9192	0.91917749	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			1														22.528	22.528	2	0.00024606	18055	DP690-3	115.29	95.83			1.1196	1.222	NaN	1	0	Median	2906300	1502000	1404200	856	653	811	1686	4053;4054;4055;4056;4057	4054		5	9606
ALLLLPVEQGFTFSGICR	0	1	Unmodified	2020.0816	0.081568145	1430	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	0	0	11	0											1						23.627	23.627	2	0.0001273	21267	DP690-11	118.76	118.76			0.69056	0.83727	NaN	1	0	Median	4213500	2438400	1775000	857	1430	812	1687	4058;4059	4058		2	9606
ALLLTGDFSQAGNK	1	0	Unmodified	1433.7514	0.75144346	2106	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	yes	yes	0	0	0	15	0															1		17.862	17.862	2	0.00023907	12537	DP690-15	115.23	115.23			0.98709	1.1637	NaN	1	0	Median	13839000	7222500	6616900	858	2106	813	1688	4060;4061	4061		2	9606
ALLNLPGTQTSGEAK	1	0	Unmodified	1498.7991	0.79912193	1863	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	8	4				1								1					16.805	16.805	2	1.5259E-05	11529	DP690-12	162.68	162.68			0.8387	0.92315	8.0312	2	0	Median	210810000	117570000	93235000	859	1863	814	1689;1690	4062;4063;4064;4065;4066	4064		5	9606
ALLPILQWHK	1	0	Unmodified	1217.7285	0.72846359	2291	Q9P0J1	PDP1	[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial	yes	yes	0	0	0	13	0													1				19.336	19.336	3	0.010323	14601	DP690-13	70.816	30.758			0.54121	0.61268	NaN	1	0	Median	7261700	4331600	2930200	860	2291	815	1691	4067	4067		1	9606
ALLQEFDNAVLSK	1	0	Unmodified	1446.7718	0.77184455	1092	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	11	0											1						20.375	20.375	2	5.6923E-05	17049	DP690-11	125.74	95.997			0.761	0.92116	NaN	1	0	Median	63855000	36150000	27705000	861	1092	816	1692	4068;4069;4070	4068		3	9606
ALLQQQPEDDSK	1	0	Unmodified	1370.6678	0.66777341	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	8	4				1								1					12.407	12.407	2	0.00032916	5396	DP690-12	166.34	136.79			0.67018	0.79855	NaN	1	0	Median	50056000	28777000	21279000	862	2342	817	1693;1694	4071;4072;4073	4071		3	9606
ALLQQQPEDDSKR	1	1	Unmodified	1526.7689	0.76888444	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	1	9.25	3.27				1					1			2					10.836	10.836	2;3	8.7713E-06	3270	DP690-4	127.37	94.17			0.80157	0.91052	10.041	4	0	Median	448110000	236610000	211500000	863	2342	818	1695;1696;1697;1698	4074;4075;4076;4077;4078;4079;4080;4081;4082;4083;4084	4083		11	9606
ALLSYDGLNQR	0	1	Unmodified	1248.6463	0.64625011	2401	Q9UM22	EPDR1	Mammalian ependymin-related protein 1	yes	yes	0	0	0	7	0							1										16.663	16.663	2	0.00010942	10404	DP690-7	162.97	111.62			0.92929	1.0285	NaN	1	0	Median	48748000	24548000	24200000	864	2401	819	1699	4085;4086;4087	4085		3	9606
ALLTPVAIAAGR	0	1	Unmodified	1151.7026	0.70264277	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	4	0				1													17.886	17.886	2	6.3922E-05	12156	DP690-4	146.79	133.97			0.76467	0.8069	NaN	1	0	Median	111620000	61983000	49639000	865	353	820	1700	4088;4089;4090;4091	4091		4	9606
ALLVEPVINSYLLAER	0	1	Unmodified	1799.0193	0.019285464	556	P21980	TGM2	Protein-glutamine gamma-glutamyltransferase 2	yes	yes	0	0	0	3	0			1														22.285	22.285	2	4.7909E-07	17834	DP690-3	188.91	188.91			1.8527	2.0694	NaN	1	0	Median	6759900	2041200	4718600	866	556	821	1701	4092;4093;4094;4095	4093		4	9606
ALLYLCGGDD	0	0	Unmodified	1095.4907	0.49066067	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	11.3	3.77						1								2			20.666	20.666	1	4.3116E-16	15771	DP690-14	195.85	144			NaN	NaN	NaN	0	0	Median	0	0	0	867	404	822	1702;1703;1704	4096;4097;4098;4099;4100;4101	4096		6	9606
ALMDLLQLTR	0	1	Unmodified	1172.6587	0.65872905	1296	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	0	0	12	0												1					22.102	22.102	2	0.057552	18467	DP690-12	85.731	37.862			NaN	NaN	NaN	0	0	Median	1685200	1685200	0	868	1296	823	1705	4102;4103	4102		2	9606
ALMLQGVDLLADAVAVTMGPK	1	0	2 Oxidation (M)	2144.1221	0.12211233	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	2	0	8	4				1								1					23.985	23.985	2	2.1191E-14	20514	DP690-12	162.46	162.46			0.88647	1.0058	16.05	2	0	Median	11122000	6712400	4409600	869	461	824	1706;1707	4104;4105;4106;4107;4108;4109;4110	4106	531;532	7	9606
ALNEINQFYQK	1	0	Unmodified	1366.6881	0.68811492	33	CON__P02663			yes	yes	0	0	0	5.12	3.85	1	1	2		1	1	1							1			16.394	16.394	1;2	3.2242000000000002E-24	10546	DP690-3	217.66	150.45		+	NaN	NaN	NaN	0	0	Median	755000000	755000000	0	870	33	825	1708;1709;1710;1711;1712;1713;1714;1715	4111;4112;4113;4114;4115;4116;4117;4118;4119;4120;4121;4122;4123;4124;4125	4119		15	
ALNFGLGRPLPLHFLR	0	2	Unmodified	1820.0573	0.057342726	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	1	13	0													1				19.251	19.251	4	0.00092636	14465	DP690-13	82.069	63.89			0.78846	0.90532	NaN	1	0	Median	142420000	83365000	59054000	871	491	826	1716	4126;4127;4128	4127		3	9606
ALNKGDANSEVTVYYQSGTR	1	1	Unmodified	2172.0447	0.044724946	194	O43847	NRD1	Nardilysin	yes	yes	0	0	1	3	0			1														13.887	13.887	3	9.189E-06	7223	DP690-3	125.23	101.17			1.0676	1.1841	NaN	1	0	Median	12071000	6421000	5650200	872	194	827	1717	4129	4129		1	9606
ALNLAYSSIYGSYR	0	1	Unmodified	1576.7886	0.78855725	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	7.67	3.3			1							2							18.595	18.595	2	2.8616E-15	13363	DP690-3	233.13	190.92			0.93872	1.0651	NaN	1	0	Median	27557000	15064000	12492000	873	1531	828	1718;1719;1720	4130;4131;4132;4133;4134	4134		5	9606
ALNLFQGSVEDTTGSQSLAALLNK	1	0	Unmodified	2476.2809	0.28093247	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	11	0											1						22.651	22.651	2	3.2015000000000003E-86	20131	DP690-11	349.54	316.24			0.91915	1.1119	NaN	1	0	Median	86312000	45120000	41192000	874	736	829	1721	4135;4136;4137;4138;4139;4140	4138		6	9606
ALNQEQVIAVHIDNGFMR	0	1	Oxidation (M)	2070.0317	0.031657839	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	1	0	3.5	0.5			1	1													17.41	17.41	3	0.0006188	11654	DP690-4	87.088	67.735			0.89966	1.0341	7.1848	2	0	Median	41407000	22394000	19014000	875	813	830	1722;1723	4141;4142;4143;4144;4145	4143	1221	5	9606
ALNTPVLSVLK	1	0	Unmodified	1153.7071	0.70705945	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								18.499	18.499	2	0.03156	13033	DP690-9	68.557	32.001			0.67889	0.84371	NaN	1	0	Median	4325900	2460100	1865800	876	2272	831	1724	4146;4147	4146		2	9606
ALNVTPDYSPK	1	0	Unmodified	1203.6136	0.61355299	1637	Q8N0Z6	TTC5	Tetratricopeptide repeat protein 5	yes	yes	0	0	0	13	0													1				14.335	14.335	2	0.0014716	7862	DP690-13	102.61	58.299			0.81373	0.94285	NaN	1	0	Median	17227000	8681500	8545500	877	1637	832	1725	4148;4149;4150	4149		3	9606
ALPAVQQNNLDEDLIR	0	1	Unmodified	1807.9428	0.94282606	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														18.137	18.137	2	3.1505E-17	12712	DP690-3	219.92	166.35			0.8582	0.98302	NaN	1	0	Median	23019000	12190000	10829000	878	561	833	1726	4151;4152;4153;4154	4152		4	9606
ALPAVQQNNLDEDLIRK	1	1	Unmodified	1936.0378	0.037789075	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	1	3	0			1														16.149	16.149	3	0.00020581	10200	DP690-3	97.904	79.947			1.6125	1.7884	NaN	1	0	Median	47312000	19378000	27933000	879	561	834	1727	4155	4155		1	9606
ALPDMEVVGLNFSSATTPELLLK	1	0	Oxidation (M)	2460.2822	0.28217803	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	9	0									1								22.522	22.522	2	0.00012702	17811	DP690-9	124.25	98.802			0.68987	0.85133	NaN	1	0	Median	3429500	1966900	1462600	880	1264	835	1728	4156;4157;4158;4159	4158	1905	4	9606
ALPDMEVVGLNFSSATTPELLLK	1	0	Unmodified	2444.2873	0.2872634	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								23.922	23.922	2	0.0011384	19385	DP690-9	89.232	70.443			0.74116	0.88439	NaN	1	0	Median	1824100	1101600	722510	881	1264	835	1729	4160;4161	4161		2	9606
ALPEFFNGK	1	0	Unmodified	1021.5233	0.52328142	1710;1796	Q8TAQ2;Q92922	SMARCC2;SMARCC1	SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1	no	no	0	0	0	10	0										1							17.567	17.567	2	0.00078129	13218	DP690-10	134.06	84.032			0.67943	0.83914	NaN	1	0	Median	138360000	76081000	62283000	882	1710;1796	836	1730	4162;4163;4164;4165	4162		4	9606
ALPFVPMSYQLSQTYYR	0	1	Oxidation (M)	2079.0135	0.013548159	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	1	0	10	0										1							20.205	20.205	2	0.031605	17053	DP690-10	63.091	35.762			1.2163	1.5212	NaN	1	0	Median	34890000	15643000	19247000	883	1158	837	1731	4166	4166	1808	1	9606
ALPGQLKPFETLLSQNQGGK	2	0	Unmodified	2125.1532	0.15315318	432	P09211	GSTP1	Glutathione S-transferase P	yes	yes	0	0	1	7	0							1										19.164	19.164	3	6.3321E-07	13626	DP690-7	137.27	122.06			0.90544	0.96806	NaN	1	0	Median	45374000	24386000	20988000	884	432	838	1732	4167;4168;4169;4170	4170		4	9606
ALPIIVK	1	0	Acetyl (Protein N-term)	794.52658	0.52657589	1752	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	1	0	0	6	0						1											20.95	20.95	1	0.016242	15024	DP690-6	74.597	74.597			0.77327	0.88272	NaN	1	0	Median	8435800	4698100	3737700	885	1752	839	1733	4171	4171		0	9606
ALPILEELLR	0	1	Unmodified	1165.7071	0.70705945	1517	Q6ZXV5	TMTC3	Transmembrane and TPR repeat-containing protein 3	yes	yes	0	0	0	10.5	0.5										1	1						23.651	23.651	2	0.00061036	21219	DP690-11	115.49	115.49			0.79819	0.98142	NaN	1	0	Median	5943400	3285000	2658400	886	1517	840	1734;1735	4172;4173;4174	4173		3	9606
ALPLEAEVAPVKDMAQLPETEIAPAK	2	0	Oxidation (M)	2746.4463	0.44628324	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	1	10	0										1							18.175	18.175	3	6.4167E-07	14155	DP690-10	129.26	106.33			0.57416	0.65354	NaN	1	0	Median	268060000	174880000	93185000	887	604	841	1736	4175;4176;4177	4176	827	3	9606
ALPLEAEVAPVKDMAQLPETEIAPAK	2	0	Unmodified	2730.4514	0.45136862	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	10	0										1							19.938	19.938	3	1.3189E-10	16629	DP690-10	149.12	137.81			0.67574	0.82193	NaN	1	0	Median	112530000	68336000	44198000	888	604	841	1737	4178;4179;4180;4181	4178		4	9606
ALPLPHFDTINLPEKK	2	0	Unmodified	1832.0196	0.019619815	2396	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	1	11	0											1						17.444	17.444	4	0.029472	12991	DP690-11	47.217	34.901			0.75592	0.88733	NaN	1	0	Median	53606000	35866000	17740000	889	2396	842	1738	4182	4182		1	9606
ALPPGPPTGATANR	0	1	Unmodified	1318.6993	0.69934831	798	P49674	CSNK1E	Casein kinase I isoform epsilon	yes	yes	0	0	0	13	0													1				12.371	12.371	2	0.021156	5182	DP690-13	68.786	30.493			0.4919	0.60572	NaN	1	0	Median	23095000	13593000	9502100	890	798	843	1739	4183;4184	4183		2	9606
ALPSEELNR	0	1	Unmodified	1027.5298	0.52982336	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	10	0										3							13.068	13.068	2	0.040684	6659	DP690-10	101.64	48.927			NaN	NaN	NaN	0	0	Median	0	0	0	891	1111	844	1740;1741;1742	4185;4186;4187	4185		3	9606
ALPSQGLSSSAVLEK	1	0	Unmodified	1485.8039	0.80387296	326	O95470	SGPL1	Sphingosine-1-phosphate lyase 1	yes	yes	0	0	0	12	0												1					15.657	15.657	2	8.1917E-05	9910	DP690-12	145.23	113.94			0.76059	0.91275	NaN	1	0	Median	28737000	17720000	11017000	892	326	845	1743	4188;4189	4188		2	9606
ALQAAIQQLAEAQPEATAK	1	0	Unmodified	1951.0375	0.037454724	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	6	4		1								1							18.493	18.493	2	2.2918E-22	14608	DP690-10	214.61	214.61			0.809	0.9979	NaN	1	0	Median	93996000	53354000	40642000	893	1782	846	1744;1745	4190;4191;4192	4190		3	9606
ALQALEELR	0	1	Unmodified	1041.5819	0.58185893	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	7	3.56		1							1	1							16.855	16.855	2	0.00018847	10850	DP690-9	164.72	75.355			0.79582	0.88892	11.053	3	0	Plateau	645890000	353020000	292870000	894	1319	847	1746;1747;1748	4193;4194;4195;4196;4197;4198;4199;4200;4201;4202;4203;4204;4205;4206	4205		14	9606
ALQDMSSTAPPAPQPSTR	0	1	Oxidation (M)	1869.8891	0.88907593	153	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	1	0	3	0			1														12.306	12.306	2	1.4609E-09	5026	DP690-3	155.14	124.58			0.53544	0.59625	NaN	1	0	Median	6142700	3640500	2502100	895	153	848	1749	4207;4208;4209;4210;4211	4209	170	5	9606
ALQEGEGDLSISADR	0	1	Unmodified	1559.7427	0.74272927	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	7	4			1								1						15.257	15.257	2	1.481E-06	8951	DP690-3	178.95	128.15			0.84421	0.90885	NaN	1	0	Median	74769000	40069000	34700000	896	797	849	1750;1751	4212;4213;4214;4215;4216;4217	4215		6	9606
ALQFLEEVK	1	0	Unmodified	1075.5914	0.59136099	702	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	8	4				1								1					18.119	18.119	2	0.00077549	13345	DP690-12	134.48	79.867			1.251	1.4127	28.523	2	0	Median	116320000	52397000	63927000	897	702	850	1752;1753	4218;4219;4220;4221;4222	4218		4	9606
ALQGQISSQQVAVEK	1	0	Unmodified	1584.8471	0.84713476	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	10	0										1							13.673	13.673	2	0.047358	7562	DP690-10	90.793	33.301			NaN	NaN	NaN	0	0	Median	0	0	0	898	1102	851	1754	4223	4223		1	9606
ALQHMAAMSSAQIVSATAIHNK	1	0	2 Oxidation (M)	2311.1413	0.14128464	608	P28347	TEAD1	Transcriptional enhancer factor TEF-1	yes	yes	0	2	0	13	0													1				12.807	12.807	4	0.0011678	5635	DP690-13	95.307	66.438			NaN	NaN	NaN	0	0	Median	10157000	10157000	0	899	608	852	1755	4224;4225;4226	4224	843;844	3	9606
ALQLEVDRLEELK	1	1	Unmodified	1554.8617	0.86172219	183	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	0	1	12	0												1					17.957	17.957	3	0.0020346	13207	DP690-12	84.169	44.423			0.87627	1.1019	NaN	1	0	Median	41160000	20585000	20575000	900	183	853	1756	4227	4227		1	9606
ALQLLDEVLHTMPIADPQPLD	0	0	Oxidation (M)	2344.1984	0.1984484	1213	Q13485	SMAD4	Mothers against decapentaplegic homolog 4	yes	yes	0	1	0	12	0												1					23.337	23.337	2	4.0769E-08	19862	DP690-12	154.69	124.15			NaN	NaN	NaN	0	0	Median	0	0	0	901	1213	854	1757	4228;4229	4228	1858	2	9606
ALQLLHCFPLDIR	0	1	Unmodified	1594.8654	0.86536778	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			3														20.04	20.04	3	0.00061821	15266	DP690-3	93.649	72.843			0.74555	0.8457	NaN	1	0	Median	10830000	6551500	4278800	902	5	855	1758;1759;1760	4230;4231;4232;4233	4231		4	9606
ALQQEQEIEQR	0	1	Unmodified	1370.679	0.6790068	1763;1595	Q86YP4;Q8WXI9	GATAD2A;GATAD2B	Transcriptional repressor p66-alpha;Transcriptional repressor p66-beta	no	no	0	0	0	12.3	1.25											1	1		1			12.269	12.269	2	1.1933E-23	5130	DP690-12	212.03	146.76			0.87853	1.0733	NaN	1	0	Median	68882000	62680000	6202000	903	1595;1763	856	1761;1762;1763	4234;4235;4236;4237;4238	4237		5	9606
ALQQNGAPGIAK	1	0	Unmodified	1166.6408	0.6407708	2026	Q9BW60	ELOVL1	Elongation of very long chain fatty acids protein 1	yes	yes	0	0	0	9	0									1								11.185	11.185	2	0.00032186	3656	DP690-9	117.81	117.81			0.72978	0.93294	NaN	1	0	Median	11608000	6937300	4670400	904	2026	857	1764	4239;4240;4241	4241		3	9606
ALQQVIQDYTTPPNEELSR	0	1	Unmodified	2201.0964	0.096426166	2350	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	9.33	3.77				1								2					19.248	19.248	2	0.00016281	14903	DP690-12	154.72	114.84			0.99862	1.2175	NaN	1	0	Median	7816500	4053100	3763500	905	2350	858	1765;1766;1767	4242;4243;4244	4243		3	9606
ALQQYTLEPSEKPFDLK	2	0	Unmodified	2006.0361	0.03605774	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	1	11	0											1						17.43	17.43	3	0.088136	12797	DP690-11	36.043	18.466			0.76997	0.87129	NaN	1	0	Median	157010000	92331000	64677000	906	2515	859	1768	4245	4245		1	9606
ALQSGQCAGAALDVFTEEPPRDR	0	2	Unmodified	2487.1812	0.1812352	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	1	4	0				1													17.297	17.297	3	6.8152E-08	11503	DP690-4	171	154.49			1.2418	1.3011	NaN	1	0	Median	52582000	25475000	27107000	907	167	860	1769	4246;4247;4248;4249	4248		4	9606
ALQSLACGKPTQR	1	1	Unmodified	1428.7507	0.75073195	1229	Q13618	CUL3	Cullin-3	yes	yes	0	0	1	3	0			1														10.847	10.847	3	0.0096279	3241	DP690-3	69.03	34.852			0.96688	1.0723	NaN	1	0	Median	13023000	6393000	6630000	908	1229	861	1770	4250	4250		1	9606
ALQSPALGLR	0	1	Unmodified	1024.6029	0.60292873	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	2	0		1															15.315	15.315	2	0.0033783	8134	DP690-2	93.162	66.779			1.3625	1.4269	NaN	1	0	Median	5601600	2588900	3012700	909	766	862	1771	4251;4252	4252		2	9606
ALQSVGQIVGEVLK	1	0	Unmodified	1439.8348	0.83477916	983	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	6	0						1											21.516	21.516	2	4.1943E-05	15669	DP690-6	134.49	95.736			1.1057	1.2605	NaN	1	0	Median	7951500	3711800	4239700	910	983	863	1772	4253;4254;4255;4256;4257;4258	4255		6	9606
ALQYACGNALVCDNVEDARR	0	2	Unmodified	2294.0532	0.053197918	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	1	10	0										1							15.526	15.526	3	0.0019445	10327	DP690-10	69.069	47.082			0.64229	0.765	NaN	1	0	Median	72723000	42267000	30456000	911	1285	864	1773	4259	4259		1	9606
ALSAEAALAR	0	1	Unmodified	971.53999	0.53999412	214	O60678	PRMT3	Protein arginine N-methyltransferase 3	yes	yes	0	0	0	4	0				1													13.986	13.986	2	0.00060325	7194	DP690-4	115.7	66.281			1.0962	1.2446	NaN	1	0	Median	25264000	11314000	13951000	912	214	865	1774	4260;4261;4262;4263	4261		4	9606
ALSAIADLLTNEHER	0	1	Unmodified	1651.8529	0.85294842	216	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	11	0											4						18.884	18.884	3	7.5762E-12	15012	DP690-11	193.11	135.59			NaN	NaN	NaN	0	0	Median	82135000	82135000	0	913	216	866	1775;1776;1777;1778	4264;4265;4266;4267	4264		4	9606
ALSDDGVSDLEDPTLTPLKDTER	1	1	Unmodified	2486.2024	0.20240738	206	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	1	4	0				1													18.269	18.269	3	0.026624	12741	DP690-4	45.395	23.531			1.0486	1.196	NaN	1	0	Median	5723100	3791300	1931800	914	206	867	1779	4268	4268		1	9606
ALSEEKDVLK	2	0	Unmodified	1130.6183	0.61830402	1400	Q53EZ4	CEP55	Centrosomal protein of 55 kDa	yes	yes	0	0	1	12	0												1					11.635	11.635	2	0.062215	4317	DP690-12	75.509	44.087			0.94149	1.1091	NaN	1	0	Median	18576000	8848700	9727800	915	1400	868	1780	4269	4269		1	9606
ALSFLGFSAPTPIQALTLAPAIR	0	1	Unmodified	2354.3362	0.33620293	2073	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	11	0											1						25.389	25.389	2	0.00067209	23403	DP690-11	103.21	96.915			0.65291	0.77052	NaN	1	0	Median	2169900	1411800	758120	916	2073	869	1781	4270	4270		1	9606
ALSGTSPDDVQPGPSVGPPSK	1	0	Unmodified	1991.98	0.97999942	2454	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	10	4						1								1			14.237	14.237	2	4.0097E-23	7824	DP690-14	203.52	203.52			0.46368	0.56415	NaN	1	0	Median	46747000	31825000	14922000	917	2454	870	1782;1783	4271;4272;4273;4274	4272		4	9606
ALSGTSPDDVQPGPSVGPPSKDKDK	3	0	Unmodified	2478.2238	0.22381152	2454	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	2	14	0														2			12.184	12.184	3;4	0.00010366	4960	DP690-14	108.5	75.984			0.51357	0.52675	NaN	1	0	Median	57625000	38524000	19101000	918	2454	871	1784;1785	4275;4276	4276		2	9606
ALSGYCGFMAANLYAR	0	1	Unmodified	1763.8123	0.81234593	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	11	0											1						19.728	19.728	2	0.07596	16173	DP690-11	97.163	72.811			1.0263	1.2329	NaN	1	0	Median	26255000	12164000	14091000	919	877	872	1786	4277	4277		0	9606
ALSIFNELR	0	1	Unmodified	1061.5869	0.58694431	2362	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	12	0												1					19.667	19.667	2	0.00078792	15193	DP690-12	133.57	65.203			0.94899	1.1259	NaN	1	0	Median	49303000	24548000	24755000	920	2362	873	1787	4278;4279;4280	4279		3	9606
ALSPLEEWLR	0	1	Unmodified	1212.6503	0.65027285	597	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	11	0											1						21.281	21.281	2	0.0021131	18419	DP690-11	101.46	49.932			0.859	1.0365	NaN	1	0	Median	23163000	11842000	11321000	921	597	874	1788	4281;4282;4283;4284;4285	4284		5	9606
ALSQLAEVEEK	1	0	Unmodified	1215.6347	0.63468237	1227;219	Q13596;O60749	SNX1;SNX2	Sorting nexin-1;Sorting nexin-2	no	no	0	0	0	4	0				1													15.04	15.04	2	3.1524E-05	8584	DP690-4	185.6	130.23			0.87147	0.93549	NaN	1	0	Median	40792000	21399000	19393000	922	1227;219	875	1789	4286;4287;4288	4288		3	9606
ALSSGGSITSPPLSPALPK	1	0	Unmodified	1778.9778	0.97781458	1512	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	10	0										1							17.401	17.401	2	0.00046078	13003	DP690-10	101.62	78.612			0.47866	0.58674	NaN	1	0	Median	30776000	19155000	11621000	923	1512	876	1790	4289	4289		1	9606
ALSSSADDASLVNASISSSVK	1	0	Unmodified	2007.996	0.99604342	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.7	0.471										1	2						17.583	17.583	2	1.6951000000000002E-123	13169	DP690-11	349.81	266.59			0.88415	1.0416	NaN	1	0	Median	279630000	154160000	125470000	924	2190	877	1791;1792;1793	4290;4291;4292;4293;4294;4295	4294		6	9606
ALSTMDLQK	1	0	Oxidation (M)	1021.5114	0.51139611	2172	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	yes	yes	0	1	0	11	4							1								1		11.925	11.925	2	0.032763	4594	DP690-7	79.713	26.927			0.9794	1.0933	22.909	2	0	Median	93734000	44397000	49337000	925	2172	878	1794;1795	4296;4297;4298;4299	4298	2657	4	9606
ALSTTASTAAFDKQPQSR	1	1	Unmodified	1878.9436	0.94355434	914	P57772	EEFSEC	Selenocysteine-specific elongation factor	yes	yes	0	0	1	12	0												1					12.858	12.858	3	0.00030124	6025	DP690-12	93.768	71.115			0.75353	0.96673	NaN	1	0	Median	22985000	13824000	9161200	926	914	879	1796	4300	4300		1	9606
ALTDPIQGTEYSAESLVR	0	1	Unmodified	1948.9742	0.97418577	2330	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	3	0			2														19.591	19.591	2	4.7922E-05	14566	DP690-3	162.72	116.56			NaN	NaN	NaN	0	0	Median	0	0	0	927	2330	880	1797;1798	4301;4302	4301		2	9606
ALTLGALTLPLAR	0	1	Unmodified	1308.8129	0.8129215	1993	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	6	3.56			1	1							1						21.72	21.72	2	1.0329E-05	17244	DP690-3	187.97	173.83			0.8369	0.98497	14.307	3	0	Plateau	40395000	21803000	18592000	928	1993	881	1799;1800;1801	4303;4304;4305;4306;4307;4308;4309;4310;4311	4310		9	9606
ALTLIAGSPLK	1	0	Unmodified	1082.6699	0.66994566	1576	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	3	0			2														17.72	17.72	2	0.017421	12230	DP690-3	102.06	76.167			NaN	NaN	NaN	0	0	Median	0	0	0	929	1576	882	1802;1803	4312;4313	4312		2	9606
ALTLPGSSENEYIMK	1	0	Oxidation (M)	1667.8076	0.80763771	892	P55060	CSE1L	Exportin-2	yes	yes	0	1	0	3	0			2														16.68	16.68	2	0.013908	10780	DP690-3	97.163	60.019			NaN	NaN	NaN	0	0	Median	24453000	14038000	10414000	930	892	883	1804;1805	4314;4315	4314	1358	2	9606
ALTSADGASEEQSQNDEDNQGSEK	1	0	Unmodified	2509.0324	0.032441518	1773	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	14	0														2			11.317	11.317	2;3	4.7562E-58	3785	DP690-14	350.76	346.85			0.86439	1.0255	0.30023	2	0	Median	26617000	13920000	12697000	931	1773	884	1806;1807	4316;4317;4318;4319;4320;4321;4322;4323	4319		8	9606
ALTSEIALLQSR	0	1	Unmodified	1300.7351	0.73506511	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	8.33	3.3				1					1			1					18.572	18.572	2	6.0399E-53	13908	DP690-12	378.74	332.28			1.3813	1.5613	78.89	2	0	Median	313300000	172740000	140560000	932	375	885	1808;1809;1810	4324;4325;4326;4327;4328;4329;4330;4331	4324		8	9606
ALTSFLPAPTQLSQDQLEAEEK	1	0	Acetyl (Protein N-term)	2457.2275	0.22749992	1226	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	1	0	0	12	0												1					24.442	24.442	2	3.386E-10	21004	DP690-12	159.41	159.41			0.65647	0.79405	NaN	1	0	Median	2590300	1682900	907370	933	1226	886	1811	4332;4333;4334;4335	4334		4	9606
ALTVGGFIEEEKEDLLQHFSTANQGPK	2	0	Unmodified	2957.4771	0.4770661	2307	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	1	11	0											1						22.103	22.103	4	0.045462	19406	DP690-11	34.125	34.125			0.70807	0.84527	NaN	1	0	Median	11558000	6444800	5113300	934	2307	887	1812	4336;4337;4338	4336		3	9606
ALTVPELTQQMFDAK	1	0	Oxidation (M)	1706.8549	0.85492225	1034;370;1217	P68371;Q13509;P04350	TUBB4B;TUBB3;TUBB4A	Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	1	0	9	4					1								1				18.353	18.353	2	0.00012133	13154	DP690-13	124.12	12.599			0.95959	0.98774	1.9739	2	0	Median	904300000	457530000	446770000	935	1034;1217;370	888	1813;1814	4339;4340;4341;4342;4343;4344	4339	386	6	9606
ALTVPELTQQMFDAK	1	0	Unmodified	1690.86	0.86000763	1034;370;1217	P68371;Q13509;P04350	TUBB4B;TUBB3;TUBB4A	Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	0	0	10.3	3.77					1								2				21.191	21.191	2	1.3327E-05	15649	DP690-5	130.44	108.11			0.97599	0.96996	NaN	1	0	Median	323840000	223820000	100020000	936	1034;1217;370	888	1815;1816;1817	4345;4346;4347;4348;4349;4350;4351	4349		7	9606
ALTVPELTQQMFDAR	0	1	Oxidation (M)	1734.8611	0.86107026	2010	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	1	0	5	0					1												18.503	18.503	2	0.0031724	12539	DP690-5	120.86	63.836			NaN	NaN	NaN	0	0	Median	18804000	18804000	0	937	2010	889	1818	4352;4353	4352	2543	2	9606
ALTVPELTQQMFDSK	1	0	Oxidation (M)	1722.8498	0.84983687	2017	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	1	0	9	4					1								1				18.222	18.222	2	8.1265E-05	13197	DP690-13	125.36	83.148			0.81758	0.93665	NaN	1	0	Median	148310000	101800000	46512000	938	2017	890	1819;1820	4354;4355;4356;4357;4358	4357	2550	5	9606
ALTVPELTQQMFDSK	1	0	Unmodified	1706.8549	0.85492225	2017	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	13	0													1				18.39	18.39	2	0.0026167	13106	DP690-13	91.914	8.6001			0.9125	0.97405	NaN	1	0	Median	606730000	313520000	293200000	939	2017	890	1821	4359	4359		1	9606
ALTVPELTQQVFDAK	1	0	Unmodified	1658.8879	0.88793694	406	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	11.9	2.96				1	1	1	1	1				1	18	1	1	1	23.639	23.639	2	1.1978E-14	15249	DP690-5	223.77	167.14			0.93939	1.0272	10.361	21	0	Median	8467599999.999999	4429600000	4038099999.9999995	940	406	891	1822;1823;1824;1825;1826;1827;1828;1829;1830;1831;1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846;1847;1848	4360;4361;4362;4363;4364;4365;4366;4367;4368;4369;4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380;4381;4382;4383;4384;4385;4386;4387;4388;4389;4390;4391;4392;4393;4394;4395;4396;4397;4398;4399;4400;4401;4402;4403;4404;4405;4406;4407;4408;4409;4410;4411;4412;4413;4414;4415;4416;4417;4418;4419;4420;4421;4422;4423;4424;4425;4426;4427;4428;4429;4430;4431;4432;4433;4434;4435;4436;4437;4438;4439;4440;4441;4442;4443;4444	4428		84	9606
ALTYMMEALPR	0	1	2 Oxidation (M)	1326.6312	0.63119367	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	2	0	2	0		1															14.896	14.896	2	0.037094	7630	DP690-2	70.552	31.589			1.3439	1.4018	NaN	1	0	Median	5112200	1799700	3312500	941	1282	892	1849	4445;4446	4445	1964;1965	2	9606
ALVADSHPESER	0	1	Unmodified	1309.6262	0.62624295	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							10.481	10.481	3	0.00084704	2952	DP690-10	92.112	52.487			0.76615	0.87246	NaN	1	0	Median	396820000	214620000	182200000	942	1080	893	1850	4447;4448	4448		2	9606
ALVAIGTHDLDTLSGPFTYTAK	1	0	Unmodified	2290.1845	0.18451289	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	9.25	3.27				1					1			2					19.988	19.988	3	6.2518000000000005E-24	15665	DP690-12	202.94	175.24			0.75887	0.90466	25.962	3	0	Median	138060000	51587000	86477000	943	2210	894	1851;1852;1853;1854	4449;4450;4451;4452;4453;4454;4455;4456;4457;4458;4459;4460;4461	4451		13	9606
ALVAVLLSR	0	1	Unmodified	940.60695	0.60695147	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	6	4		1								1							18.701	18.701	2	0.00039444	14828	DP690-10	186.09	120.29			0.89381	1.0065	15.15	2	0	Median	94966000	51359000	43608000	944	1782	895	1855;1856	4462;4463;4464;4465;4466;4467;4468	4462		7	9606
ALVAYYQK	1	0	Unmodified	954.51747	0.51746776	969	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	16	0																1	13.726	13.726	2	0.04776	6815	DP690-16	134.12	12.247			0.92694	0.95315	NaN	1	0	Median	465300000	239560000	225740000	945	969	896	1857	4469	4469		0	9606
ALVDGPCTQVR	0	1	Unmodified	1214.6078	0.60775611	825	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	11	4							1								1		13.473	13.473	2	4.1585E-05	6754	DP690-15	158.76	111.67			0.77203	0.83659	NaN	1	0	Median	166060000	92200000	73859000	946	825	897	1858;1859	4470;4471;4472	4471		3	9606
ALVDHENVISCPHLGASTK	1	0	Unmodified	2047.0157	0.015673424	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	4	0				2													13.923	13.923	3;4	2.5415E-14	7083	DP690-4	193.42	170.19			1.2101	1.2764	3.3109	2	0	Median	257630000	112270000	145360000	947	167	898	1860;1861	4473;4474;4475;4476;4477;4478	4477		6	9606
ALVFQPVAELK	1	0	Unmodified	1213.7071	0.70705945	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	3	0			1														18.635	18.635	2	0.0040177	13466	DP690-3	90.108	32.148			0.97762	1.0452	NaN	1	0	Median	14116000	7060700	7055200	948	415	899	1862	4479;4480	4480		2	9606
ALVFQPVAELKDQTDFEHR	1	1	Unmodified	2242.1382	0.1382314	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	1	3	0			1														17.834	17.834	4	9.77E-05	12433	DP690-3	106.28	51.008			0.88374	0.98013	NaN	1	0	Median	27164000	14565000	12599000	949	415	900	1863	4481;4482	4482		2	9606
ALVGGSSGVTPSNDQSPWEEK	1	0	Unmodified	2144.0022	0.0021914296	2046	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	10	0										1							16.278	16.278	2	0.0092731	11383	DP690-10	100.4	70.709			NaN	NaN	NaN	0	0	Median	0	0	0	950	2046	901	1864	4483	4483		1	9606
ALVGICTGHSNPGEDAR	0	1	Unmodified	1752.8213	0.82133071	1289	Q14699	RFTN1	Raftlin	yes	yes	0	0	0	11	0											1						12.977	12.977	3	0.00089393	6464	DP690-11	81.428	50.861			0.92221	1.1063	NaN	1	0	Median	60876000	30016000	30860000	951	1289	902	1865	4484	4484		1	9606
ALVHDGDTVSVHRPGFYAER	0	2	Unmodified	2225.0978	0.09776357	1957	Q99755	PIP5K1A	Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha	yes	yes	0	0	1	12	0												1					13.09	13.09	4	0.0011826	6305	DP690-12	73.498	47.911			0.88108	0.99901	NaN	1	0	Median	100020000	53328000	46693000	952	1957	903	1866	4485;4486	4486		2	9606
ALVHERDEAAYGELR	0	2	Unmodified	1727.8591	0.85909643	2384	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	1	7.25	0.433							3	1									12.533	12.533	2;3;4	8.1608E-05	5208	DP690-7	117.48	92.515			0.8059	0.83065	6.9391	3	0	Median	581350000	326070000	255280000	953	2384	904	1867;1868;1869;1870	4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497;4498;4499	4488		13	9606
ALVLANPEVSLWR	0	1	Unmodified	1466.8245	0.82454882	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								20.467	20.467	2	0.0014521	15461	DP690-9	97.813	61.854			0.9155	1.1469	NaN	1	0	Median	5659600	2588300	3071300	954	2217	905	1871	4500;4501;4502	4502		3	9606
ALVLDCHYPEDEVGQEDEAESDIFSIR	0	1	Unmodified	3135.3979	0.39788908	1130	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	15	0															1		20.577	20.577	3	3.0737E-06	15716	DP690-15	124	111.5			0.79173	0.92219	NaN	1	0	Median	4124000	2682900	1441100	955	1130	906	1872	4503;4504;4505;4506;4507;4508;4509	4504		7	9606
ALVMLLEVR	0	1	Oxidation (M)	1058.6158	0.6158016	1799	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	yes	no	0	1	0	3	0			1														18.955	18.955	2	0.056618	13930	DP690-3	84.568	41.969			NaN	NaN	NaN	0	0	Median	5601400	5601400	0	956	1799	907	1873	4510	4510		1	9606
ALVNQLHER	0	1	Unmodified	1078.5883	0.5883413	2167	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	12	0												1					11.028	11.028	3	0.0066368	3548	DP690-12	111.46	58.739			NaN	NaN	NaN	0	0	Median	0	0	0	957	2167	908	1874	4511	4511		1	9606
ALVQNDTLLQVK	1	0	Unmodified	1340.7664	0.76636524	1771	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	15	0															1		16.785	16.785	2	0.00012298	11082	DP690-15	135.71	135.71			0.82264	0.93229	NaN	1	0	Median	80711000	44120000	36590000	958	1771	909	1875	4512;4513;4514;4515	4512		4	9606
ALVSEEGEGKNPVDYIQGLLDLK	2	0	Unmodified	2486.2904	0.29043453	1229	Q13618	CUL3	Cullin-3	yes	yes	0	0	1	11	0											1						23.084	23.084	3	0.0030424	20563	DP690-11	96.016	67.203			NaN	NaN	NaN	0	0	Median	8825900	8825900	0	959	1229	910	1876	4516;4517	4517		2	9606
ALVTGYFMQVAHLER	0	1	Oxidation (M)	1749.8872	0.88722543	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	7	4			1								1						18.364	18.364	3	0.0055351	13046	DP690-3	71.031	52.208			1.007	1.1844	7.5271	2	0	Median	47292000	22002000	25290000	960	161	911	1877;1878	4518;4519	4519	181	1	9606
ALVTYDLETAIPSSTR	0	1	Unmodified	1735.8992	0.89922991	1197	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	10	0										2							19.187	19.187	2	0.0066321	15515	DP690-10	128.67	73.274			NaN	NaN	NaN	0	0	Median	0	0	0	961	1197	912	1879;1880	4520;4521	4520		2	9606
ALVVIPIIFGILFAILLVLVFIKK	2	0	Unmodified	2651.7525	0.75254707	588	P25942	CD40	Tumor necrosis factor receptor superfamily member 5	yes	yes	0	0	1	13	0													1				30.336	30.336	3	0.0011604	25637	DP690-13	100.21	100.21			NaN	NaN	NaN	0	0	Median	0	0	0	962	588	913	1881	4522	4522		1	9606
ALWADSGIQNAYDR	0	1	Unmodified	1578.7427	0.74266969	1273	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	14	0														1			17.724	17.724	2	3.988E-05	12579	DP690-14	141.1	118.37			0.97111	1.1741	NaN	1	0	Median	54883000	28635000	26248000	963	1273	914	1882	4523;4524	4523		2	9606
ALWFQGR	0	1	Unmodified	876.46062	0.46062159	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											1						17.202	17.202	2	0.074756	12527	DP690-11	97.64	46.604			NaN	NaN	NaN	0	0	Median	75895000	75895000	0	964	735	915	1883	4525;4526	4525		2	9606
ALYDTFSAFGNILSCK	1	0	Unmodified	1805.8658	0.86582129	471	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	11.5	0.5											1	1					23.033	23.033	2	3.3599E-17	20539	DP690-11	213.84	213.84			1.1376	1.3911	13.735	2	0	Median	22013000	10932000	11081000	965	471	916	1884;1885	4527;4528;4529;4530;4531;4532;4533;4534;4535	4527		9	9606
ALYDYAGQEADELSFR	0	1	Unmodified	1846.8374	0.83735793	2376	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	13	0													1				19.638	19.638	2	5.8028E-09	14963	DP690-13	187.78	162.05			0.71245	0.86548	NaN	1	0	Median	51239000	30261000	20978000	966	2376	917	1886	4536;4537	4536		2	9606
ALYEDVILQPGTQEALK	1	0	Unmodified	1886.9989	0.99894395	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	10	0										1							19.133	19.133	2	0.00017624	15516	DP690-10	117.03	91.047			0.96288	1.1756	NaN	1	0	Median	25142000	11848000	13294000	967	1891	918	1887	4538;4539	4538		2	9606
ALYESELADAR	0	1	Unmodified	1236.5986	0.59863121	1104	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	12	0												1					15.418	15.418	2	0.00068188	9584	DP690-12	109.44	109.44			0.77694	0.9216	NaN	1	0	Median	48275000	26370000	21905000	968	1104	919	1888	4540;4541;4542	4540		3	9606
ALYETELADAR	0	1	Unmodified	1250.6143	0.61428128	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					15.729	15.729	2	0.00019308	9977	DP690-12	147.2	43.366			0.80183	0.89239	NaN	1	0	Median	262390000	140850000	121540000	969	544	920	1889	4543;4544;4545;4546	4545		4	9606
ALYETELADARR	0	2	Unmodified	1406.7154	0.7153923	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	12	0												1					14.128	14.128	3	1.2339E-05	7717	DP690-12	128.03	97.145			0.80777	0.91589	NaN	1	0	Median	108020000	57268000	50756000	970	544	921	1890	4547;4548	4547		2	9606
ALYIHAQPLHSR	0	1	Unmodified	1404.7626	0.76261727	1894	Q96LW7	C9orf89	Bcl10-interacting CARD protein	yes	yes	0	0	0	16	0																1	11.705	11.705	3	0.0011704	4429	DP690-16	96.067	80.566			0.72523	0.83772	NaN	1	0	Median	26658000	15195000	11462000	971	1894	922	1891	4549;4550;4551;4552	4551		4	9606
ALYSTAMESIQGEAR	0	1	Oxidation (M)	1641.7668	0.76683553	1957	Q99755;A2A3N6	PIP5K1A;PIPSL	Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Putative PIP5K1A and PSMD4-like protein	yes	no	0	1	0	12	0												2					15.119	15.119	2	0.010159	9207	DP690-12	116.54	73.12			NaN	NaN	NaN	0	0	Median	0	0	0	972	1957	923	1892;1893	4553;4554	4554	2494	2	9606
ALYTYESK	1	0	Unmodified	973.47566	0.47566253	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										1							13.021	13.021	2	0.074004	6614	DP690-10	92.47	23.273			NaN	NaN	NaN	0	0	Median	0	0	0	973	1783	924	1894	4555	4555		1	9606
ALYYLQIHPQELR	0	1	Unmodified	1642.8831	0.88312633	1355	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	3	0			1														17.427	17.427	3	0.00071856	11877	DP690-3	119.74	86.127			0.92162	1.0363	NaN	1	0	Median	32737000	14144000	18593000	974	1355	925	1895	4556;4557;4558;4559	4556		4	9606
AMDEIQPDLR	0	1	Oxidation (M)	1202.5601	0.56013721	2366	Q9UK41	VPS28	Vacuolar protein sorting-associated protein 28 homolog	yes	yes	0	1	0	11	4							1								1		13.718	13.718	2	0.00029925	7023	DP690-15	130.56	102.74			0.77503	0.87354	8.6462	2	0	Median	89928000	50199000	39729000	975	2366	926	1896;1897	4560;4561;4562;4563;4564;4565;4566;4567	4561	2799	8	9606
AMDLAQAGSTVESK	1	0	Oxidation (M)	1422.6661	0.66605885	1420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	1	0	9.67	0.471									1	2							12.632	12.632	2	0.0027066	6038	DP690-10	134.99	73.031			NaN	NaN	NaN	0	0	Median	0	0	0	976	1420	927	1898;1899;1900	4568;4569;4570	4568	2143	3	9606
AMDQEITVNPQFVQK	1	0	Oxidation (M)	1762.856	0.85598488	2409	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	1	0	6	0						1											15.876	15.876	2	0.02274	9200	DP690-6	99.671	58.591			NaN	NaN	NaN	0	0	Median	0	0	0	977	2409	928	1901	4571	4571	2830	1	9606
AMDSDWFAENYMGR	0	1	2 Oxidation (M)	1723.6607	0.6606559	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	2	0	13	0													1				17.574	17.574	2	0.0010974	12260	DP690-13	104.07	99.276			0.76542	0.94352	NaN	1	0	Median	21433000	11219000	10213000	978	894	929	1902	4572;4573	4572	1366;1367	2	9606
AMEFVDVTESNAR	0	1	Oxidation (M)	1483.6613	0.66130782	1671	Q8NB37	PDDC1	Parkinson disease 7 domain-containing protein 1	yes	yes	0	1	0	15	0															1		14.766	14.766	2	1.0002E-05	8462	DP690-15	191.4	160.79			0.86505	0.97976	NaN	1	0	Median	52633000	27203000	25430000	979	1671	930	1903	4574;4575;4576;4577	4577	2282	4	9606
AMEGIFMKPSELLK	2	0	2 Oxidation (M)	1624.8205	0.820451	1936	Q99470	SDF2	Stromal cell-derived factor 2	yes	yes	0	2	1	15	0															1		16.299	16.299	3	0.0019901	10505	DP690-15	75.483	31.982			0.73974	0.84704	NaN	1	0	Median	42657000	24513000	18145000	980	1936	931	1904	4578;4579	4578	2469;2470	2	9606
AMEVDERPTEQYSDIGGLDK	1	1	Unmodified	2252.0267	0.026691621	519	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	1	5	0					1												15.907	15.907	3	0.0011522	9232	DP690-5	75.017	45.381			0.97164	1.0417	NaN	1	0	Median	39256000	17247000	22009000	981	519	932	1905	4580;4581	4581		2	9606
AMGIMNSFVNDIFER	0	1	2 Oxidation (M)	1774.8018	0.80184082	224;399	P57053;O60814;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;Q99880;P06899;Q16778;P33778;P23527;Q8N257	H2BFS;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B	no	no	0	2	0	13	3.56								1							1	1	20.505	20.505	2	1.4436E-06	15290	DP690-16	184.44	156.58			1.0288	1.1029	19.959	3	0	Median	230630000	113570000	117060000	982	224;399	933	1906;1907;1908	4582;4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594	4587	226;227	13	9606
AMGIMNSFVNDIFERIAGEASR	0	2	2 Oxidation (M)	2459.1573	0.15732864	224;399	P57053;O60814;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P06899;Q16778;P33778;P23527	H2BFS;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O	no	no	0	2	1	16	0																1	22.97	22.97	3	0.0022777	17925	DP690-16	61.87	46.942			1.306	1.3798	NaN	1	0	Median	2270100	1110800	1159300	983	224;399	934	1909	4595;4596	4595	226;227	2	9606
AMGNLQIDFADPSR	0	1	Unmodified	1533.7246	0.72457678	377	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	0	14	0														1			18.855	18.855	2	0.0052194	14119	DP690-14	101.71	70.822			0.82785	1.0039	NaN	1	0	Median	27597000	15724000	11874000	984	377	935	1910	4597	4597		1	9606
AMGNLQIDFADPSR	0	1	Oxidation (M)	1549.7195	0.7194914	377	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	1	0	14	0														1			17.442	17.442	2	0.015902	12249	DP690-14	102.4	61.673			NaN	NaN	NaN	0	0	Median	0	0	0	985	377	935	1911	4598	4598	402	1	9606
AMGQGLPDEEQEK	1	0	Oxidation (M)	1446.6297	0.62967334	2490	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	1	0	11	0											2						11.512	11.512	2	0.002167	4280	DP690-11	125.74	86.932			NaN	NaN	NaN	0	0	Median	0	0	0	986	2490	936	1912;1913	4599;4600	4599	2929	2	9606
AMGTLLNTAISEVIGK	1	0	Oxidation (M)	1632.8757	0.87565769	171	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	1	0	3	0			1														22.11	22.11	2	1.1412E-06	17641	DP690-3	145.23	127.17			0.67522	0.709	NaN	1	0	Median	6075600	3760300	2315300	987	171	937	1914	4601;4602;4603;4604	4602	190	4	9606
AMHQAQTMEGCSSPMVVK	1	0	2 Oxidation (M)	2022.8631	0.86313723	1795	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	2	0	12.3	0.471												2	1				10.509	10.509	3	0.00056776	3285	DP690-12	83.894	49.473			0.86668	1.0186	9.6281	2	0	Median	56256000	36017000	20240000	988	1795	938	1915;1916;1917	4605;4606;4607;4608;4609	4605	2368;2369;2370	5	9606
AMHQAQTMEGCSSPMVVK	1	0	Oxidation (M)	2006.8682	0.8682226	1795	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	1	0	12	0												1					11.287	11.287	3	0.050904	3896	DP690-12	44.1	28.846			0.81237	0.98613	NaN	1	0	Median	9504300	5326200	4178200	989	1795	938	1918	4610	4610	2368;2369;2370	1	9606
AMHQAQTMEGCSSPMVVK	1	0	3 Oxidation (M)	2038.8581	0.85805185	1795	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	3	0	9.67	4.03				1								1	1				10.265	10.265	3	0.0019489	2566	DP690-4	70.335	53.456			0.95747	1.0686	16.811	2	0	Median	51890000	13975000	37915000	990	1795	938	1919;1920;1921	4611;4612;4613;4614;4615;4616	4616	2368;2369;2370	6	9606
AMKPPGGESSNLFGSPEEATPSSRPNR	1	2	Oxidation (M)	2815.3195	0.3195196	2139	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	1	2	11	4							1								1		13.173	13.173	4	1.8767E-05	6324	DP690-15	109.23	94.994			0.52934	0.60028	5.0015	2	0	Median	92861000	56564000	36296000	991	2139	939	1922;1923	4617;4618;4619;4620;4621;4622;4623	4617	2630	7	9606
AMNYNAKDEVDGGPPCAPGGTAK	2	0	Acetyl (Protein N-term);Oxidation (M)	2377.0315	0.031459423	2230	Q9NV96	TMEM30A	Cell cycle control protein 50A	yes	yes	1	1	1	12	0												1					13.974	13.974	2	0.00032567	7534	DP690-12	96.096	67.12			NaN	NaN	NaN	0	0	Median	0	0	0	992	2230	940	1924	4624	4624	2706	1	9606
AMSDSVLPDSIGYLNEAHR	0	1	Unmodified	2073.979	0.97895357	2566				yes	yes	0	0	0	9	0									1								25.317	25.317	2	0.084935	20814	DP690-9	34.685	24.897	+		0.90856	1.1324	NaN	1	0	Median	3346000	1870300	1475700	993	2566	941	1925	4625	4625		1	9606
AMSLVSNEGEGEQNEIR	0	1	Oxidation (M)	1877.8425	0.84251967	1281	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	1	0	9	0									1								13.778	13.778	2	0.039195	6876	DP690-9	92.19	66.071			NaN	NaN	NaN	0	0	Median	0	0	0	994	1281	942	1926	4626	4626	1962	1	9606
AMSTTSISSPQPGK	1	0	Oxidation (M)	1406.6711	0.67114423	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	1	0	8	4				1								1					10.708	10.708	2	6.9758E-06	3169	DP690-12	181.53	156.29			0.70198	0.78885	0.30403	2	0	Median	128150000	70494000	57651000	995	2361	943	1927;1928	4627;4628;4629;4630;4631;4632;4633;4634;4635;4636;4637	4630	2797	11	9606
AMSTTSISSPQPGK	1	0	Unmodified	1390.6762	0.67622961	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	8	4				1								1					12.415	12.415	2	3.4194E-05	5346	DP690-12	139.15	87.204			0.73876	0.83754	15.9	2	0	Median	56260000	30652000	25608000	996	2361	943	1929;1930	4638;4639;4640;4641;4642;4643;4644;4645	4641		8	9606
AMSVEQLTDVLMNEILHGADGTSIK	1	0	2 Oxidation (M)	2703.3095	0.30953176	1829	Q96BW5	PTER	Phosphotriesterase-related protein	yes	yes	0	2	0	6	0						1											22.473	22.473	3	4.2835E-07	16775	DP690-6	137.72	118.32			0.88358	0.99871	NaN	1	0	Median	5525400	3212500	2312900	997	1829	944	1931	4646;4647;4648;4649	4647	2407;2408	4	9606
AMTEDGFLAVCSEAK	1	0	Oxidation (M)	1643.7171	0.71710814	418	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	1	0	4	0				3													16.491	16.491	2	4.3021E-08	10485	DP690-4	174.77	147.88			NaN	NaN	NaN	0	0	Median	4147300	0	4147300	998	418	945	1932;1933;1934	4650;4651;4652;4653	4650	470	4	9606
AMTILLEEAK	1	0	Oxidation (M)	1133.6002	0.60021112	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	9.5	0.866									3		1						15.139	15.139	2	0.00019996	9534	DP690-11	140.5	84.379			0.87534	0.937	NaN	1	0	Median	421500000	218390000	203110000	999	897	946	1935;1936;1937;1938	4654;4655;4656;4657;4658;4659;4660	4654	1387	7	9606
AMTILLEEAK	1	0	Unmodified	1117.6053	0.60529649	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						17.489	17.489	2	0.00019372	12932	DP690-11	128.36	91.17			0.84645	0.91358	NaN	1	0	Median	378730000	203200000	175530000	1000	897	946	1939	4661;4662;4663	4661		3	9606
AMYPGTFYFQFK	1	0	Oxidation (M)	1514.6904	0.69042311	2204	Q9NRW3	APOBEC3C	DNA dC->dU-editing enzyme APOBEC-3C	yes	yes	0	1	0	7	0							1										19.882	19.882	2	0.00035766	14423	DP690-7	164.96	150.72			0.67347	0.72204	NaN	1	0	Median	59626000	34833000	24793000	1001	2204	947	1940	4664;4665;4666;4667	4667	2680	4	9606
ANCSDNEFTQALTAAIPPESLTR	0	1	Unmodified	2505.1806	0.1805665	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	11	0											2						21.452	21.452	2	1.9466E-37	18635	DP690-11	239.19	220.36			0.62949	0.76506	NaN	1	0	Median	19450000	11101000	8348800	1002	1375	948	1941;1942	4668;4669;4670;4671;4672;4673	4671		6	9606
ANDDLADAGLEK	1	0	Unmodified	1230.5728	0.57281039	2160	Q9HB90;Q9NQL2	RRAGC;RRAGD	Ras-related GTP-binding protein C;Ras-related GTP-binding protein D	yes	no	0	0	0	13	0													1				14.214	14.214	2	0.0068493	7678	DP690-13	98.898	60.622			1.0007	1.1605	NaN	1	0	Median	38195000	19925000	18270000	1003	2160	949	1943	4674;4675;4676	4676		3	9606
ANDGEGGDEEAGTEEAVPR	0	1	Unmodified	1901.7875	0.78750721	2112	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	yes	yes	0	0	0	13.5	0.5													1	1			12.891	12.891	2	1.6485E-64	5944	DP690-14	277.31	225.06			0.77295	0.95323	NaN	1	0	Median	28136000	19924000	8211500	1004	2112	950	1944;1945	4677;4678;4679;4680;4681;4682;4683	4683		7	9606
ANDLTHSLSSYLK	1	0	Unmodified	1447.7307	0.73070802	1975	Q9BQ75	CMSS1	Protein CMSS1	yes	yes	0	0	0	14	0														1			17.149	17.149	3	0.012936	11907	DP690-14	63.181	29.42			2.0529	2.4338	NaN	1	0	Median	145880000	63081000	82804000	1005	1975	951	1946	4684;4685	4684		2	9606
ANDQEPCGWWLAK	1	0	Unmodified	1573.6984	0.69836203	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	11	0											1						18.465	18.465	2	3.264E-05	14445	DP690-11	138.76	101.07			0.79061	0.95807	NaN	1	0	Median	69281000	35273000	34008000	1006	829	952	1947	4686;4687;4688;4689	4689		4	9606
ANDYANAVLQALSNVPPLR	0	1	Unmodified	2025.0643	0.064338176	1404	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	12	0												1					24.127	24.127	2	1.0334E-08	20652	DP690-12	169.94	136.18			NaN	NaN	NaN	0	0	Median	963790	963790	0	1007	1404	953	1948	4690;4691;4692	4691		3	9606
ANEAMAIDTLLISDELFR	0	1	Unmodified	2021.0139	0.01394209	1988	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	14	0														3			24.815	24.815	2	1.3244E-09	21367	DP690-14	151.54	126.82			0.78329	0.98114	NaN	1	0	Median	1990500	1201800	788680	1008	1988	954	1949;1950;1951	4693;4694;4695;4696	4694		4	9606
ANEAMAIDTLLISDELFR	0	1	Oxidation (M)	2037.0089	0.0088567119	1988	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	1	0	14	0														1			23.735	23.735	2	3.9018E-08	20203	DP690-14	160.46	119.08			NaN	NaN	NaN	0	0	Median	2777800	0	2777800	1009	1988	954	1952	4697;4698	4697	2527	2	9606
ANEDAVPLCMSADFPR	0	1	Oxidation (M)	1807.7869	0.78691904	2064	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	1	0	4	0				1													16.798	16.798	2	0.00027842	10862	DP690-4	118.76	79.183			0.7194	0.83595	NaN	1	0	Median	6932900	3569200	3363700	1010	2064	955	1953	4699;4700;4701;4702	4700	2586	4	9606
ANEFEFVLSQFK	1	0	Unmodified	1457.7191	0.7190807	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9.5	0.5									1	1							22.726	22.726	2	8.1145E-05	20370	DP690-10	160.75	135.63			1.009	1.2171	19.398	2	0	Median	23483000	13707000	9776800	1011	1762	956	1954;1955	4703;4704;4705;4706;4707	4705		5	9606
ANELPQPPVPEPANAGK	1	0	Unmodified	1727.8842	0.88424855	1041	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	11	0											1						15.591	15.591	2	0.018294	10252	DP690-11	95.094	39.741			NaN	NaN	NaN	0	0	Median	13214000	13214000	0	1012	1041	957	1956	4708	4708		1	9606
ANEPTHFTVDCTEAGEGDVSVGIK	1	0	Unmodified	2532.1438	0.14384664	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10.2	0.373										5	1						26.377	26.377	3	1.1219E-05	11210	DP690-10	126.1	113.29			0.8483	0.95372	15.965	5	0	Median	161740000	89048000	72694000	1013	250	958	1957;1958;1959;1960;1961;1962	4709;4710;4711;4712;4713;4714;4715;4716;4717;4718;4719;4720;4721;4722;4723	4709		15	9606
ANEVEQMIR	0	1	Oxidation (M)	1104.5234	0.52335778	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	2	0		1															11.565	11.565	2	0.046599	3580	DP690-2	74.301	32.014			0.97206	0.99256	NaN	1	0	Median	3059300	1649300	1409900	1014	1264	959	1963	4724	4724		1	9606
ANFQEIISALPFVK	1	0	Unmodified	1575.8661	0.86607929	2066	Q9C0D5	TANC1	Protein TANC1	yes	yes	0	0	0	10	0										1							23.728	23.728	2	0.00083746	21628	DP690-10	103.08	55.856			0.84368	1.0227	NaN	1	0	Median	10174000	5343200	4830900	1015	2066	960	1964	4725;4726;4727	4725		3	9606
ANKLDHVVTIIK	2	0	Unmodified	1349.8031	0.8030851	1962	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	1	10	4						1								1			13.212	13.212	3	7.0897E-05	6338	DP690-14	138.42	112.38			1.4809	1.5914	56.762	2	0	Median	189160000	85685000	103480000	1016	1962	961	1965;1966	4728;4729;4730;4731;4732;4733	4728		6	9606
ANLGVFSVFAPR	0	1	Unmodified	1276.6928	0.69280637	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	9.8	0.748									2	2	1						21.346	21.346	2	1.1207E-05	18647	DP690-10	192.91	154.63			0.65388	0.81632	67.536	3	0	Median	195730000	118480000	77249000	1017	13	962	1967;1968;1969;1970;1971	4734;4735;4736;4737;4738;4739;4740;4741;4742;4743	4738		10	9606
ANLLEIAPHLSAPLPIMLPVYK	1	0	Oxidation (M)	2415.36	0.35997484	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	1	0	11.5	0.5											1	1					22.339	22.339	3	0.00051325	18721	DP690-12	86.258	77.97			0.64408	0.78084	NaN	1	0	Median	23678000	21934000	1745000	1018	737	963	1972;1973	4744;4745;4746;4747	4747	1089	4	9606
ANLLNNEAHAITMQVTK	1	0	Oxidation (M)	1882.9571	0.95709591	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	1	0	9	3.56				1							1	1					16.405	16.405	3	0.00023981	10415	DP690-4	102.03	74.569			0.77048	0.87979	5.1996	3	0	Plateau	362690000	212290000	150400000	1019	751	964	1974;1975;1976	4748;4749;4750;4751;4752;4753;4754;4755;4756;4757	4755	1105	10	9606
ANLLNNEAHAITMQVTK	1	0	Unmodified	1866.9622	0.96218129	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	11.7	0.471											1	2					17.154	17.154	3	3.9805E-05	12515	DP690-11	120.63	97.065			0.88846	0.98784	14.611	3	0	Plateau	506280000	275600000	230680000	1020	751	964	1977;1978;1979	4758;4759;4760;4761;4762;4763;4764;4765;4766;4767	4758		10	9606
ANLPQSFQVDTSK	1	0	Unmodified	1433.7151	0.71505795	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.56	2.95		1							2	3	1	1	1				15.566	15.566	2	2.2246E-07	8323	DP690-2	172.27	129.47			0.81721	0.97512	14.314	5	0	Median	3412399999.9999995	1894599999.9999998	1517799999.9999998	1021	549	965	1980;1981;1982;1983;1984;1985;1986;1987;1988	4768;4769;4770;4771;4772;4773;4774;4775;4776;4777;4778;4779;4780;4781;4782;4783;4784;4785;4786;4787;4788	4786		21	9606
ANLQIDQINTDLNLER	0	1	Unmodified	1868.9592	0.9592044	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	4.67	3.77		2								1							19.25	19.25	2	7.2086E-179	12665	DP690-2	376.65	280.48			NaN	NaN	NaN	0	0	Median	16990000	8400600	8589600	1022	668	966	1989;1990;1991	4789;4790;4791;4792;4793	4790		5	9606
ANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGK	2	0	Acetyl (Protein N-term)	3998.9001	0.90014975	1447	Q5VTL8	PRPF38B	Pre-mRNA-splicing factor 38B	yes	yes	1	0	1	10.7	1.25									1		1	1					13.328	13.328	3	1.8806E-36	6610	DP690-12	189.68	189.68			0.6703	0.76861	NaN	1	0	Median	76310000	54656000	21654000	1023	1447	967	1992;1993;1994	4794;4795;4796;4797;4798	4797		5	9606
ANNSQEPSPQLASSVASTR	0	1	Unmodified	1942.9344	0.93444622	1869	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	12	0												2					14.205	14.205	2	7.3583E-11	7856	DP690-12	191.19	133.02			NaN	NaN	NaN	0	0	Median	0	0	0	1024	1869	968	1995;1996	4799;4800	4800		2	9606
ANNYNEAVYLVR	0	1	Unmodified	1424.7048	0.70482762	1143	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	11	0											1						16.505	16.505	2	0.027985	11621	DP690-11	92.538	48.189			NaN	NaN	NaN	0	0	Median	16750000	0	16750000	1025	1143	969	1997	4801	4801		1	9606
ANPQVGVAFPHIK	1	0	Unmodified	1376.7565	0.75646926	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	11	0											1						15.305	15.305	3	0.021453	9783	DP690-11	56.951	39.817			0.57638	0.68372	NaN	1	0	Median	111240000	63297000	47944000	1026	480	970	1998	4802;4803;4804	4803		3	9606
ANSFTVSSVAAPSWLHR	0	1	Unmodified	1828.922	0.92203104	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							18.047	18.047	3	9.2823E-08	13931	DP690-10	143.93	129.54			0.74135	0.89951	NaN	1	0	Median	173860000	92692000	81168000	1027	1071	971	1999	4805;4806;4807;4808;4809	4806		5	9606
ANSPEKPPEAGAAHKPR	2	1	Unmodified	1755.9016	0.90162994	2333	Q9UFC0	LRWD1	Leucine-rich repeat and WD repeat-containing protein 1	yes	yes	0	0	2	10.5	0.5										1	1						10.028	10.028	4	0.0025439	2384	DP690-10	82.578	82.578			0.42887	0.50389	26.519	2	0	Median	8638700	6951200	1687500	1028	2333	972	2000;2001	4810;4811;4812;4813	4811		4	9606
ANSPSLFGTEGKPK	2	0	Unmodified	1431.7358	0.73579339	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	1	13	0													2				12.598	12.598	2;3	0.0057897	5416	DP690-13	93.839	66.51			0.75075	0.84466	10.461	2	0	Median	131380000	61300000	70081000	1029	1823	973	2002;2003	4814;4815;4816;4817	4815		3	9606
ANTNEVLWAVVAAFTK	1	0	Unmodified	1732.9148	0.91482039	2117	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	yes	yes	0	0	0	14	0														1			26.053	26.053	2	0.00092048	22724	DP690-14	96.059	77.093			1.0692	1.2579	NaN	1	0	Median	1961600	1006600	954990	1030	2117	974	2004	4818;4819;4820	4819		3	9606
ANTNSLEVSWGAVATADSYLLQLQK	1	0	Unmodified	2678.3552	0.35516005	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	11	0											1						24.51	24.51	2	0.050234	22305	DP690-11	96.666	66.685			NaN	NaN	NaN	0	0	Median	0	0	0	1031	837	975	2005	4821	4821		1	9606
ANTTAFLTPLEIK	1	0	Unmodified	1417.7817	0.78168095	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	11	0											1						19.656	19.656	2	1.8402E-05	16103	DP690-11	181.53	148.78			0.7576	0.88383	NaN	1	0	Median	138090000	76992000	61095000	1032	2501	976	2006	4822;4823;4824;4825	4823		4	9606
ANVDISAPK	1	0	Unmodified	913.4869	0.48689592	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10	0										1							12.079	12.079	2	0.028102	5308	DP690-10	74.301	53.602			0.51545	0.62157	NaN	1	0	Median	205340000	124080000	81262000	1033	1145	977	2007	4826;4827;4828;4829	4828		4	9606
ANVELDHATLVR	0	1	Unmodified	1336.7099	0.709913	2489	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	13	0													1				13.703	13.703	3	1.4995E-05	6925	DP690-13	132.17	132.17			0.77762	0.91536	NaN	1	0	Median	130250000	70765000	59486000	1034	2489	978	2008	4830;4831;4832;4833	4833		4	9606
ANVNEILDFFHGYR	0	1	Unmodified	1693.8213	0.82125436	1618	Q8IXT5	RBM12B	RNA-binding protein 12B	yes	yes	0	0	0	11	0											1						21.219	21.219	3	0.0014063	18322	DP690-11	80.967	59.616			0.65925	0.79908	NaN	1	0	Median	20706000	11957000	8749000	1035	1618	979	2009	4834;4835;4836	4835		3	9606
APAEILNGK	1	0	Unmodified	911.50763	0.50763136	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7	4			1								1						12.291	12.291	2	0.00056018	5362	DP690-11	148.04	106.82			0.85612	0.96667	16.71	2	0	Median	129660000	71396000	58259000	1036	470	980	2010;2011	4837;4838;4839	4837		3	9606
APAPKPELIAAEK	2	0	Unmodified	1333.7606	0.76055158	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	1	7	4			1								1						12.252	12.252	3	0.00027572	5265	DP690-11	124.51	112.58			0.63088	0.69454	9.3188	2	0	Median	251050000	149140000	101910000	1037	2501	981	2012;2013	4840;4841;4842;4843;4844	4840		5	9606
APAPQPPSLPDR	0	1	Unmodified	1244.6513	0.65133548	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	11	0											1						13.999	13.999	2	0.00013967	7850	DP690-11	135.55	92.466			0.55965	0.66033	NaN	1	0	Median	138130000	85390000	52735000	1038	1653	982	2014	4845;4846;4847;4848;4849	4848		5	9606
APASVLPAATPR	0	1	Unmodified	1149.6506	0.6506072	485	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	13	0													1				13.852	13.852	2	0.00019365	7118	DP690-13	145.25	64.81			0.63549	0.77377	NaN	1	0	Median	44793000	24994000	19799000	1039	485	983	2015	4850;4851;4852;4853	4850		4	9606
APDEETLIALLAHAK	1	0	Unmodified	1590.8617	0.86172219	2473	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	yes	yes	0	0	0	16	0																1	20.697	20.697	3	0.00033507	15363	DP690-16	98.253	67.925			0.84079	0.98389	NaN	1	0	Median	16974000	8194400	8779200	1040	2473	984	2016	4854;4855;4856;4857;4858	4857		5	9606
APDELHYTYLDTFGRPVIVAYK	1	1	Unmodified	2567.306	0.30602501	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	1	12	0												1					18.734	18.734	4	0.0012211	14162	DP690-12	70.907	56.708			0.64693	0.77162	NaN	1	0	Median	80264000	51530000	28735000	1041	375	985	2017	4859;4860	4859		2	9606
APDFVFYAPR	0	1	Unmodified	1181.5869	0.58694431	498	P26038;P35241;P15311	MSN;RDX;EZR	Moesin;Radixin;Ezrin	yes	no	0	0	0	4	0				1													18.717	18.717	2	0.00064498	13203	DP690-4	114.5	52.033			1.108	1.2883	NaN	1	0	Median	7522100	3353200	4168900	1042	498	986	2018	4861;4862;4863;4864	4863		4	9606
APDMSSSEEFPSFGAQVAPK	1	0	Unmodified	2080.9412	0.94117108	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							18.466	18.466	2	5.8686E-23	14459	DP690-10	217.19	187.16			0.81379	1.0017	NaN	1	0	Median	50368000	26355000	24013000	1043	1071	987	2019	4865;4866;4867;4868	4866		4	9606
APDMSSSEEFPSFGAQVAPK	1	0	Oxidation (M)	2096.9361	0.9360857	1071	Q00341	HDLBP	Vigilin	yes	yes	0	1	0	10	0										1							17.585	17.585	2	2.648E-06	13276	DP690-10	148.41	124.13			NaN	NaN	NaN	0	0	Median	20078000	0	20078000	1044	1071	987	2020	4869;4870	4869	1671	2	9606
APDVEGQGLDWSLK	1	0	Unmodified	1513.7413	0.7412727	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							18.457	18.457	2	3.3707E-06	12997	DP690-9	184.44	136.35			0.71839	0.90348	3.9059	2	0	Median	117600000	67586000	50010000	1045	1145	988	2021;2022	4871;4872;4873;4874	4873		4	9606
APEAAAAEREEVAYDPEDETILEEAK	1	1	Unmodified	2845.3141	0.31414267	1997	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	1	10	0										1							17.355	17.355	3	1.0422E-07	12950	DP690-10	142.23	120.19			NaN	NaN	NaN	0	0	Median	85574000	49455000	36119000	1046	1997	989	2023	4875;4876;4877;4878	4876		4	9606
APEIMLNSK	1	0	Oxidation (M)	1017.5165	0.51648149	610;600	P27361;P28482	MAPK3;MAPK1	Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 1	no	no	0	1	0	6	0						1											12.753	12.753	2	0.010325	5340	DP690-6	94.85	61.587			0.73094	0.80257	NaN	1	0	Median	55351000	31639000	23712000	1047	600;610	990	2024	4879;4880	4880	801	2	9606
APELFSYIAK	1	0	Unmodified	1137.607	0.60701105	1634	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	10	0										1							18.885	18.885	2	0.0082329	15156	DP690-10	86.136	67.696			0.92233	1.1382	NaN	1	0	Median	56326000	28273000	28053000	1048	1634	991	2025	4881;4882	4881		2	9606
APELLFGAR	0	1	Unmodified	972.53927	0.53926584	822	P50613	CDK7	Cyclin-dependent kinase 7	yes	yes	0	0	0	10	4						1								1			17.266	17.266	2	0.007141	10801	DP690-6	92.439	34.88			0.83436	0.96233	22.914	2	0	Median	205070000	122920000	82151000	1049	822	992	2026;2027	4883;4884;4885;4886;4887;4888;4889;4890	4889		8	9606
APEPGPAGDGGPGAPAR	0	1	Unmodified	1472.7008	0.70080487	1918	Q96RF0	SNX18	Sorting nexin-18	yes	yes	0	0	0	4	0				1													11.038	11.038	2	0.00020509	3493	DP690-4	115.29	82.763			0.81232	0.91517	NaN	1	0	Median	1285300	756370	528950	1050	1918	993	2028	4891;4892;4893;4894;4895;4896;4897	4892		7	9606
APEQRPAPNAAPVDPTLR	0	2	Unmodified	1898.9963	0.99625861	1484	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	1	12	0												1					12.865	12.865	3	0.036614	5982	DP690-12	48.51	19.088			0.53521	0.60685	NaN	1	0	Median	67294000	42533000	24762000	1051	1484	994	2029	4898;4899	4898		2	9606
APEYLEPLATLQENMQIR	0	1	Unmodified	2115.067	0.067040293	1424	Q5PSV4	BRMS1L	Breast cancer metastasis-suppressor 1-like protein	yes	yes	0	0	0	14	0														1			22.443	22.443	2	0.025731	18655	DP690-14	99.732	42.506			NaN	NaN	NaN	0	0	Median	0	0	0	1052	1424	995	2030	4900	4900		1	9606
APFDLFENK	1	0	Unmodified	1079.5288	0.52876073	416	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	3	0			1														18.97	18.97	2	0.00045059	13865	DP690-3	153.04	121.08			0.92889	0.96827	NaN	1	0	Median	63081000	32047000	31033000	1053	416	996	2031	4901;4902;4903;4904	4903		4	9606
APFDLFENKK	2	0	Unmodified	1207.6237	0.62372375	416	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	1	3	0			1														16.377	16.377	3	0.00084621	10426	DP690-3	86.882	86.882			0.90089	0.96681	NaN	1	0	Median	44659000	21753000	22906000	1054	416	997	2032	4905;4906;4907;4908	4906		4	9606
APFDLFENR	0	1	Unmodified	1107.5349	0.53490874	409	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	3	0			1														19.264	19.264	2	0.021721	14189	DP690-3	77.732	43.56			1.4202	1.605	NaN	1	0	Median	9667200	3629100	6038100	1055	409	998	2033	4909;4910;4911	4909		3	9606
APFNQEGQSTGPPPLIPGLGQQGAQGR	0	1	Unmodified	2701.3572	0.35722573	2069	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	0	0	0	10	0										1							18.882	18.882	2	1.9253E-11	15117	DP690-10	179.14	163.15			NaN	NaN	NaN	0	0	Median	0	0	0	1056	2069	999	2034	4912	4912		1	9606
APFPLYALQVDPSTGLLIAAGGGGAAK	1	0	Unmodified	2554.3795	0.3795243	2171	Q9HCU5	PREB	Prolactin regulatory element-binding protein	yes	yes	0	0	0	14	0														1			23.718	23.718	2	2.3288E-07	20279	DP690-14	133.71	133.71			0.42678	0.50256	NaN	1	0	Median	2643400	1676900	966500	1057	2171	1000	2035	4913	4913		1	9606
APGAEEYAQQDVLK	1	0	Unmodified	1517.7362	0.73618733	436	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	13	0													1				15.042	15.042	2	0.030893	8889	DP690-13	89.301	53.392			NaN	NaN	NaN	0	0	Median	14482000	14482000	0	1058	436	1001	2036	4914	4914		1	9606
APGAEEYAQQDVLKK	2	0	Unmodified	1645.8312	0.83115034	436	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	1	13	0													1				13.373	13.373	3	3.4336E-06	6527	DP690-13	128.73	108.35			0.59879	0.67017	NaN	1	0	Median	74248000	48459000	25790000	1059	436	1002	2037	4915	4915		1	9606
APGEAQFIPNK	1	0	Unmodified	1170.6033	0.60332266	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	9.5	0.5									1	1							14.13	14.13	2	0.038494	8233	DP690-10	91.265	46.285			NaN	NaN	NaN	0	0	Median	0	0	0	1060	2483	1003	2038;2039	4916;4917	4916		2	9606
APGEQTVPALNLQNAFR	0	1	Unmodified	1824.9482	0.94824579	2499	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	11	0											1						19.456	19.456	2	1.1356E-17	15875	DP690-11	217.22	177.21			0.60366	0.72337	NaN	1	0	Median	57026000	36671000	20355000	1061	2499	1004	2040	4918;4919;4920	4918		3	9606
APGFAQMLK	1	0	Oxidation (M)	977.50044	0.50043749	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	4	0				1													13.32	13.32	2	0.028501	6544	DP690-4	82.305	51.801			2.6198	2.7602	NaN	1	0	Median	95597000	19092000	76505000	1062	826	1005	2041	4921;4922	4921	1240	2	9606
APGLGAFR	0	1	Unmodified	787.43407	0.43407249	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							14.411	14.411	2	3.8453E-06	7701	DP690-9	159.75	100.14			NaN	NaN	NaN	0	0	Median	12505000	12505000	0	1063	1046	1006	2042;2043	4923;4924;4925;4926	4925		4	9606
APGMNSLEQGMVGLK	1	0	2 Oxidation (M)	1562.7433	0.74326331	2053	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	2	0	8	4				1								1					13.99	13.99	2	0.0020118	7182	DP690-4	92.295	59.772			0.7353	0.81651	11.379	2	0	Median	183350000	103120000	80230000	1064	2053	1007	2044;2045	4927;4928;4929;4930;4931;4932	4932	2571;2572	6	9606
APGMNSLEQGMVGLK	1	0	Oxidation (M)	1546.7483	0.74834869	2053	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	1	0	12	0												2					16.058	16.058	2	1.2845E-11	10900	DP690-12	184.87	120.5			0.76045	0.88844	NaN	1	0	Median	157420000	115300000	42115000	1065	2053	1007	2046;2047	4933;4934;4935	4934	2571;2572	3	9606
APGMNSLEQGMVGLK	1	0	Unmodified	1530.7534	0.75343407	2053	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	0	0	12	0												1					18.122	18.122	2	6.8611E-10	13395	DP690-12	206.36	161.94			0.71759	0.83435	NaN	1	0	Median	105730000	58170000	47561000	1066	2053	1007	2048	4936;4937;4938;4939	4937		4	9606
APGMNTIDQGMAALK	1	0	2 Oxidation (M)	1548.7276	0.72761325	2497	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	2	0	12	0												1					13.542	13.542	2	0.0010088	6920	DP690-12	103.43	73.663			0.76101	0.90714	NaN	1	0	Median	39089000	22651000	16438000	1067	2497	1008	2049	4940;4941;4942;4943	4943	2932;2933	4	9606
APGMNTIDQGMAALK	1	0	Oxidation (M)	1532.7327	0.73269863	2497	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	1	0	12	0												3					15.749	15.749	2	0.0013065	9203	DP690-12	147.28	96.489			NaN	NaN	NaN	0	0	Median	29404000	16499000	12905000	1068	2497	1008	2050;2051;2052	4944;4945;4946	4946	2932;2933	3	9606
APGPGLAQGLPQLHSLVLR	0	1	Unmodified	1923.1054	0.10541513	1645	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	12	0												1					19.051	19.051	3	1.4179E-06	14603	DP690-12	127.88	120.08			0.74807	0.88661	NaN	1	0	Median	43221000	23410000	19811000	1069	1645	1009	2053	4947;4948	4947		2	9606
APGPQAGPGPGVR	0	1	Unmodified	1159.6098	0.60980502	286	O76024	WFS1	Wolframin	yes	yes	0	0	0	10	0.816									1	1	1						10.682	10.682	2	0.00010367	3286	DP690-10	143.7	143.7			0.42865	0.53043	12.007	3	0	Median	161280000	104030000	57251000	1070	286	1010	2054;2055;2056	4949;4950;4951;4952;4953;4954;4955;4956;4957;4958	4949		10	9606
APGTNVAMASNQAVR	0	1	Oxidation (M)	1501.7307	0.73072479	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	1	0	9.5	0.5									1	1							11.388	11.388	2	1.4619E-05	3752	DP690-9	173.72	144.76			0.74767	0.93	11.758	2	0	Median	114020000	64939000	49080000	1071	808	1011	2057;2058	4959;4960;4961;4962;4963;4964;4965;4966	4964	1212	8	9606
APGTNVAMASNQAVR	0	1	Unmodified	1485.7358	0.73581017	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.33	0.471									2	1							12.687	12.687	2	1.3005E-15	6141	DP690-10	255.41	222.66			0.77493	0.96739	12.162	2	0	Median	89592000	46010000	43582000	1072	808	1011	2059;2060;2061	4967;4968;4969;4970;4971;4972;4973;4974;4975	4969		9	9606
APHDFQFVQK	1	0	Unmodified	1215.6037	0.60365701	1564	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	3	0			1														13.179	13.179	3	0.0041323	6182	DP690-3	80.706	45.951			11.588	12.303	NaN	1	0	Median	31010000	2827300	28183000	1073	1564	1012	2062	4976;4977	4976		2	9606
APIDTSDVEEK	1	0	Unmodified	1202.5667	0.56666238	1123	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	0	0	4	0				1													12.59	12.59	2	0.00024111	5337	DP690-4	151.83	117.64			NaN	NaN	NaN	0	0	Median	4122800	4122800	0	1074	1123	1013	2063	4978	4978		1	9606
APIIAVTR	0	1	Unmodified	839.52289	0.52288749	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	4	0				1													13.656	13.656	2	0.018693	6779	DP690-4	130.04	91.668			NaN	NaN	NaN	0	0	Median	0	0	0	1075	488	1014	2064	4979	4979		1	9606
APILIATDVASR	0	1	Unmodified	1225.703	0.7030367	517;1793	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	9.43	4.03			1	1					1		1	1	1	1			16.631	16.631	2	2.9694E-10	11836	DP690-11	214.05	183.37			0.76302	0.8648	9.9238	7	0	Median	4282199999.9999995	2401200000	1880999999.9999998	1076	1793;517	1015	2065;2066;2067;2068;2069;2070;2071	4980;4981;4982;4983;4984;4985;4986;4987;4988;4989;4990;4991;4992;4993;4994;4995;4996;4997;4998;4999;5000;5001;5002;5003;5004;5005;5006;5007	4983		28	9606
APIRPDIVNFVHTNLR	0	2	Unmodified	1861.0323	0.032250187	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	10	3.32					1				1				2				17.188	17.188	3;4	0.0035791	11871	DP690-13	72.433	59.654			0.72971	0.7883	11.234	4	0	Median	898040000	503100000	394930000	1077	681	1016	2072;2073;2074;2075	5008;5009;5010;5011;5012;5013;5014	5012		7	9606
APIVTVGVNNDPADVR	0	1	Unmodified	1635.858	0.8580338	1966	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	7	4			1								1						15.939	15.939	2	8.8594E-08	9917	DP690-3	176.05	152.37			0.74269	0.84203	NaN	1	0	Median	10668000	6048500	4619400	1078	1966	1017	2076;2077	5015;5016;5017;5018;5019	5018		5	9606
APKPDGPGGGPGGSHMGGNYGDDR	1	1	Oxidation (M)	2267.9614	0.96140602	672	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	1	11.7	4.11				1					1			1		1	1	1	10.222	10.222	4	0.00083862	2483	DP690-12	71.946	46.748			0.61543	0.69666	19.515	6	0	Median	280290000	167820000	112460000	1079	672	1018	2078;2079;2080;2081;2082;2083	5020;5021;5022;5023;5024;5025;5026;5027;5028;5029;5030;5031;5032	5020	975	13	9606
APKPDGPGGGPGGSHMGGNYGDDR	1	1	Unmodified	2251.9665	0.9664914	672	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	12	0												1					10.577	10.577	4	3.3944E-05	2944	DP690-12	122.68	122.68			0.58197	0.66025	NaN	1	0	Median	151010000	98944000	52066000	1080	672	1018	2084	5033;5034	5033		2	9606
APLATGEDDDDEVPDLVENFDEASK	1	0	Unmodified	2690.1719	0.17189511	541	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	15	0															1		21.348	21.348	2	2.5938E-08	16674	DP690-15	133.23	119.6			NaN	NaN	NaN	0	0	Median	410020	410020	0	1081	541	1019	2085	5035	5035		1	9606
APLDIPIPDPPPKDDEMETDKQEK	3	0	Oxidation (M)	2733.3055	0.30549224	2384	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	1	2	7	0							1										15.656	15.656	4	0.025278	9025	DP690-7	42.209	26.624			0.4796	0.52716	NaN	1	0	Median	100400000	69100000	31303000	1082	2384	1020	2086	5036	5036	2810	1	9606
APLDIPVPDPVK	1	0	Unmodified	1259.7125	0.71253876	1124	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	7	0							1										18.627	18.627	2	0.00017817	12872	DP690-7	130.41	105.28			0.51767	0.5659	NaN	1	0	Median	11628000	7505100	4123300	1083	1124	1021	2087	5037;5038	5037		2	9606
APLDIPVPDPVKEK	2	0	Unmodified	1516.8501	0.85009487	1124	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	1	7	0							1										16.848	16.848	3	0.0005789	10480	DP690-7	94.688	94.688			0.5668	0.606	NaN	1	0	Median	120670000	79115000	41557000	1084	1124	1022	2088	5039;5040;5041;5042	5040		4	9606
APLGAGVIER	0	1	Unmodified	981.56073	0.56072956	1600	Q8IV50	LYSMD2	LysM and putative peptidoglycan-binding domain-containing protein 2	yes	yes	0	0	0	7	0							1										14.224	14.224	2	0.00060325	7358	DP690-7	115.7	61.494			0.76362	0.83259	NaN	1	0	Median	73126000	43607000	29520000	1085	1600	1023	2089	5043;5044	5044		2	9606
APLGTTVLLWSLLR	0	1	Acetyl (Protein N-term)	1580.929	0.92901389	1050	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	1	0	0	3	0			1														22.573	22.573	2	0.068918	18170	DP690-3	63.076	15.182			NaN	NaN	NaN	0	0	Median	1079900	0	1079900	1086	1050	1024	2090	5045	5045		1	9606
APLNVQFNSPLPGDAVK	1	0	Unmodified	1765.9363	0.93628412	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	7.75	3.34		1							1	2							18.599	18.599	2	1.6565E-23	14686	DP690-10	263.89	223.88			0.64946	0.75747	12.875	3	0	Plateau	365250000	192640000	172610000	1087	250	1025	2091;2092;2093;2094	5046;5047;5048;5049;5050;5051;5052;5053;5054;5055	5049		10	9606
APLPDLYPFGTMR	0	1	Oxidation (M)	1492.7384	0.73843593	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	1	0	11	0											1						19.786	19.786	2	0.0017314	16259	DP690-11	102.53	86.333			0.57669	0.65763	NaN	1	0	Median	214550000	130980000	83570000	1088	1793	1026	2095	5056;5057;5058;5059	5057	2358	4	9606
APLPDLYPFGTMR	0	1	Unmodified	1476.7435	0.74352131	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11	0											2						21.015	21.015	2	5.6787E-05	17611	DP690-11	142.83	103.2			0.5949	0.7123	10.088	2	0	Median	174130000	107850000	66286000	1089	1793	1026	2096;2097	5060;5061;5062;5063;5064	5060		5	9606
APLQQCAEDR	0	1	Unmodified	1186.5401	0.54007047	1304	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	3	0			1														10.583	10.583	2	0.00017479	2927	DP690-3	131.5	83.413			0.81448	0.92577	NaN	1	0	Median	11526000	6014000	5511800	1090	1304	1027	2098	5065;5066;5067	5065		3	9606
APLQVAVLGPTGVAEPVEVR	0	1	Unmodified	2001.1259	0.1258758	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							19.468	19.468	2	3.1904000000000004E-30	12918	DP690-2	233.52	233.52			0.69165	0.81228	3.3576	3	0	Plateau	139940000	96643000	43293000	1091	1270	1028	2099;2100;2101	5068;5069;5070;5071;5072;5073;5074;5075;5076;5077	5074		10	9606
APLVCLPVFVSR	0	1	Unmodified	1356.7588	0.75877744	2094	Q9H0W9	C11orf54	Ester hydrolase C11orf54	yes	yes	0	0	0	6	0						1											20.763	20.763	2	0.04151	14937	DP690-6	63.283	63.283			0.57835	0.64486	NaN	1	0	Median	2442300	1270400	1171900	1092	2094	1029	2102	5078	5078		1	9606
APMAAQGMVETR	0	1	Oxidation (M)	1276.5904	0.59039149	1273	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	1	0	14	0														2			11.188	11.188	2	0.014848	3096	DP690-14	98.943	65.021			0.64886	0.78945	NaN	1	0	Median	28167000	11011000	17155000	1093	1273	1030	2103;2104	5079;5080	5080	1955;1956	2	9606
APMVNPTLGVHEADLLK	1	0	Oxidation (M)	1819.9502	0.95021962	1207	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	1	0	9	0									1								16.627	16.627	3	0.051396	10693	DP690-9	45.54	34.926			0.78819	0.9986	NaN	1	0	Median	7239600	4040200	3199400	1094	1207	1031	2105	5081	5081		1	9606
APNISMPDVDLNLK	1	0	Oxidation (M)	1541.7759	0.77594365	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9	0									1								17.176	17.176	2	2.8299E-05	11339	DP690-9	168.85	168.85			0.61208	0.78133	NaN	1	0	Median	10100000	6238200	3861600	1095	1145	1032	2106	5082;5083;5084;5085	5082	1762	4	9606
APNISMPDVDLNLKGPK	2	0	Oxidation (M)	1823.9451	0.94513424	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	1	9.5	0.5									1	1							15.756	15.756	3	8.3631E-05	9399	DP690-9	114.06	90.023			0.89466	1.0817	29.467	2	0	Median	109120000	45457000	63668000	1096	1145	1033	2107;2108	5086;5087;5088;5089;5090;5091	5088	1762	6	9606
APNYSCVMTGSWDK	1	0	Oxidation (M)	1630.6756	0.67557768	1045	P78406	RAE1	mRNA export factor	yes	yes	0	1	0	14	0														1			14.967	14.967	2	0.00012441	8873	DP690-14	124.12	90.358			0.77572	0.94413	NaN	1	0	Median	40701000	25010000	15692000	1097	1045	1034	2109	5092;5093;5094;5095	5094	1579	4	9606
APNYSCVMTGSWDK	1	0	Unmodified	1614.6807	0.68066306	1045	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	14	0														1			17.207	17.207	2	7.3801E-07	11916	DP690-14	193.62	171.04			0.77127	0.93196	NaN	1	0	Median	83676000	45856000	37820000	1098	1045	1034	2110	5096;5097;5098;5099	5097		4	9606
APPAPLAASEVTNSNSAER	0	1	Unmodified	1880.9228	0.9228189	2448	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	11	0											2						14.298	14.298	2	4.3937E-13	8372	DP690-11	196.7	163.66			1.6124	1.929	NaN	1	0	Median	29538000	13900000	15638000	1099	2448	1035	2111;2112	5100;5101	5100		2	9606
APPCEYKDWLTK	2	0	Unmodified	1506.7177	0.71770049	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.33	0.471									2	1							15.356	15.356	2;3	8.3036E-05	8955	DP690-9	140.78	116.32			0.68174	0.78394	15.493	3	0	Plateau	346120000	202360000	143760000	1100	1046	1036	2113;2114;2115	5102;5103;5104;5105;5106;5107;5108;5109;5110;5111;5112;5113;5114;5115;5116;5117	5109		16	9606
APPGPAGLSGGESLLVK	1	0	Unmodified	1548.8512	0.8511575	2201	Q9NRL3	STRN4	Striatin-4	yes	yes	0	0	0	11	0											1						17.424	17.424	2	0.019404	12909	DP690-11	60.161	56.939			0.4027	0.49101	NaN	1	0	Median	30393000	21396000	8997000	1101	2201	1037	2116	5118	5118		1	9606
APPILPPHLLQVILNK	1	0	Unmodified	1762.0869	0.086911519	2481	Q9Y478	PRKAB1	5'-AMP-activated protein kinase subunit beta-1	yes	yes	0	0	0	10	4						1								1			21.444	21.444	3	0.0003529	15592	DP690-6	93.348	93.348			0.60931	0.68965	17.538	2	0	Median	17698000	11487000	6211100	1102	2481	1038	2117;2118	5119;5120;5121;5122	5121		4	9606
APPPSLTDCIGTVDSR	0	1	Unmodified	1684.809	0.80903469	2281	Q9NZZ3	CHMP5	Charged multivesicular body protein 5	yes	yes	0	0	0	7	0							1										16.503	16.503	2	0.00053383	10112	DP690-7	105.25	81.528			1.11	1.2765	NaN	1	0	Median	17304000	7771000	9532700	1103	2281	1039	2119	5123;5124	5123		2	9606
APPQTHLPSGASSGTGSASATHGGGSPPGTR	0	1	Unmodified	2784.3175	0.31754576	754	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	3	0			1														10.79	10.79	4	1.4867E-06	3145	DP690-3	79.512	79.512			1.8245	2.0377	NaN	1	0	Median	6740000	2680300	4059700	1104	754	1040	2120	5125;5126;5127	5126		3	9606
APQETYADIGGLDNQIQEIK	1	0	Unmodified	2202.0804	0.080441751	965	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	4	0				1													19.031	19.031	2	5.8394E-18	13611	DP690-4	209.56	190.06			1.5258	1.6346	NaN	1	0	Median	3806800	1538600	2268200	1105	965	1041	2121	5128;5129;5130;5131	5128		4	9606
APQMYEFHLPLSPEELLK	1	0	Oxidation (M)	2157.0816	0.081627725	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	1	0	3	0			1														21.109	21.109	3	0.018452	16488	DP690-3	55.094	39.887			0.86295	0.90592	NaN	1	0	Median	5834400	3266800	2567500	1106	1311	1042	2122	5132	5132	2004	1	9606
APQVDVDKAVAELK	2	0	Unmodified	1481.809	0.80895834	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	1	3	0			1														16.211	16.211	3	0.051285	10255	DP690-3	49.066	20.09			0.74789	0.80708	NaN	1	0	Median	25282000	13254000	12028000	1107	720	1043	2123	5133;5134	5134		2	9606
APSAPPGTGALPPAAPSGR	0	1	Unmodified	1670.874	0.87401821	2097	Q9H1B7	IRF2BPL	Interferon regulatory factor 2-binding protein-like	yes	yes	0	0	0	11	0											1						13.799	13.799	2	0.0072523	7634	DP690-11	113.54	81.286			NaN	NaN	NaN	0	0	Median	0	0	0	1108	2097	1044	2124	5135	5135		1	9606
APSGNEEPCLLK	1	0	Unmodified	1313.6286	0.62855113	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	8	3.54		1							1	1	1						13.963	13.963	2	5.196E-05	7017	DP690-9	131.52	100.09			0.77096	0.90521	2.4548	3	0	Median	447240000	251910000	195330000	1109	1270	1045	2125;2126;2127;2128	5136;5137;5138;5139;5140;5141;5142;5143;5144;5145	5144		10	9606
APSLDIKGPEVDVSGPK	2	0	Unmodified	1707.9043	0.90431529	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9	0									1								15.675	15.675	3	1.3487E-07	9429	DP690-9	144.41	120.92			0.69752	0.81762	NaN	1	0	Median	27902000	15492000	12410000	1110	1145	1046	2129	5146;5147	5146		2	9606
APSSSSLNSATSSQSK	1	0	Unmodified	1537.722	0.72199382	1415	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	yes	yes	0	0	0	12	0												1					10.518	10.518	2	0.0035358	2850	DP690-12	138.2	74.341			NaN	NaN	NaN	0	0	Median	0	0	0	1111	1415	1047	2130	5148	5148		1	9606
APSTYGGGLSVSSR	0	1	Unmodified	1337.6575	0.65754307	40	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	9.5	0.5									1	1							13.574	13.574	2	0.0014332	7465	DP690-10	172.61	111.78		+	NaN	NaN	NaN	0	0	Median	60770000	60770000	0	1112	40	1048	2131;2132	5149;5150;5151	5150		3	9606
APSTYGGGLSVSSSR	0	1	Unmodified	1424.6896	0.68957148	29	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	8	5.45	1	1			1			1	1						1	1	13.502	13.502	2	2.7418000000000004E-25	5956	DP690-2	211.63	144.14		+	NaN	NaN	NaN	0	0	Median	106110000	106110000	0	1113	29	1049	2133;2134;2135;2136;2137;2138;2139	5152;5153;5154;5155;5156;5157;5158;5159;5160;5161;5162;5163;5164;5165;5166	5160		15	9606
APSVANVGSHCDLSLK	1	0	Unmodified	1653.8145	0.81445442	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.5	0.5									1	1							14.065	14.065	3	1.5095E-05	8115	DP690-10	150.12	128.21			0.62354	0.75889	4.7225	2	0	Median	364400000	221170000	143230000	1114	549	1050	2140;2141	5167;5168;5169;5170;5171;5172	5167		6	9606
APSVATVGSICDLNLK	1	0	Unmodified	1643.8553	0.8552566	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	7.67	4.03		1								1	1						18.31	18.31	2	5.5953E-07	14244	DP690-10	190.35	166.64			0.86629	0.95252	7.3265	2	0	Median	174290000	95570000	78717000	1115	250	1051	2142;2143;2144	5173;5174;5175;5176;5177	5173		5	9606
APSVPAAEPEYPK	1	0	Unmodified	1354.6769	0.67688153	890	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	15	0															1		13.836	13.836	2	0.00014413	7125	DP690-15	143.5	102.78			0.53365	0.6189	NaN	1	0	Median	45898000	30316000	15581000	1116	890	1052	2145	5178;5179;5180	5178		3	9606
APSYIEIFGR	0	1	Unmodified	1151.5975	0.597509	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	2	0		1															19.135	19.135	2	0.017915	12624	DP690-2	74.92	39.625			1.0123	1.0492	NaN	1	0	Median	4447500	2397400	2050100	1117	1437	1053	2146	5181;5182	5182		2	9606
APTIEQMKDVYIVQDLMETDLYK	2	0	2 Oxidation (M)	2774.3394	0.33943491	610	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	2	1	6	0						1											19.294	19.294	3	1.8009E-15	13227	DP690-6	165.13	145.88			0.88135	0.91112	NaN	1	0	Median	16121000	9235400	6885300	1118	610	1054	2147	5183;5184;5185;5186	5186	846;847	4	9606
APTTAAAAAAGVSSTK	1	0	Unmodified	1373.7151	0.71505795	157	O15479	MAGEB2	Melanoma-associated antigen B2	yes	yes	0	0	0	10	4						1								1			12.423	12.423	2	2.7242E-07	5232	DP690-14	169.09	144.86			0.90265	1.0559	9.7072	2	0	Median	67156000	36982000	30174000	1119	157	1055	2148;2149	5187;5188;5189;5190	5187		4	9606
APVDFGYVGIDSILEQMR	0	1	Oxidation (M)	2024.9877	0.98772734	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	1	0	12	0												1					22.136	22.136	2	0.00029883	18676	DP690-12	115.06	99.124			0.77485	0.94416	NaN	1	0	Median	8798100	4333500	4464700	1120	2344	1056	2150	5191;5192	5191	2782	2	9606
APVDITGQFEK	1	0	Unmodified	1203.6136	0.61355299	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	11	0											1						16.097	16.097	2	0.00029328	10803	DP690-11	157.99	93.786			0.83388	0.97695	NaN	1	0	Median	130690000	74098000	56595000	1121	797	1057	2151	5193;5194;5195;5196;5197	5194		5	9606
APVIDIGIANTGK	1	0	Unmodified	1267.7136	0.71360139	2489	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	13	0													1				17.199	17.199	2	0.0001518	11765	DP690-13	146.71	125.02			0.71265	0.82342	NaN	1	0	Median	64331000	34498000	29833000	1122	2489	1058	2152	5198;5199;5200;5201	5199		4	9606
APVIRPGGTLGLSEAADSDAHLFQDSTEPR	0	2	Unmodified	3106.532	0.53195521	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	1	10	0										1							17.959	17.959	4	1.0182E-05	13844	DP690-10	90.757	68.518			0.5815	0.69259	NaN	1	0	Median	220210000	123300000	96908000	1123	2065	1059	2153	5202;5203;5204;5205	5204		4	9606
APVNTAELTDLLIQQNHIGSVIK	1	0	Unmodified	2473.354	0.35403784	2300	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	10	4						1								1			20.901	20.901	3	6.7096E-38	15066	DP690-6	239.1	205.44			0.9448	1.1148	23.789	2	0	Median	44022000	21583000	22439000	1124	2300	1060	2154;2155	5206;5207;5208;5209;5210	5208		5	9606
APVPASELLASGVLSR	0	1	Unmodified	1565.8777	0.8777066	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	11.2	3.82		1							1	1	1	1	1	1	2		19.59	19.59	2	3.0503999999999996E-22	14318	DP690-9	239.48	222.95			0.69262	0.7396	7.5794	6	0	Median	1134200000	677140000	457050000	1125	1319	1061	2156;2157;2158;2159;2160;2161;2162;2163;2164	5211;5212;5213;5214;5215;5216;5217;5218;5219;5220;5221;5222;5223;5224;5225;5226;5227;5228;5229;5230;5231;5232;5233;5234;5235;5236;5237;5238;5239	5238		29	9606
APVPGTPDSLSSGSSR	0	1	Unmodified	1513.7372	0.73724996	2365	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	14	0														1			13.47	13.47	2	3.2235E-07	6633	DP690-14	167.2	111.74			0.6356	0.75284	NaN	1	0	Median	124270000	78107000	46164000	1126	2365	1062	2165	5240;5241;5242;5243	5241		4	9606
APVPTGEVYFADSFDR	0	1	Unmodified	1769.8261	0.82606496	605	P27824	CANX	Calnexin	yes	yes	0	0	0	3	0			1														19.346	19.346	2	0.016506	14337	DP690-3	97.121	68.944			NaN	NaN	NaN	0	0	Median	4998200	0	4998200	1127	605	1063	2166	5244	5244		1	9606
APVQPQQSPAAAPGGTDEKPSGK	2	0	Unmodified	2217.1026	0.10257418	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	1	3	0			1														10.55	10.55	3	1.0505E-15	2820	DP690-3	173.45	158.01			0.97189	1.0439	NaN	1	0	Median	41051000	21259000	19792000	1128	1190	1064	2167	5245;5246;5247;5248;5249	5245		5	9606
APVTCTPGQPGQQR	0	1	Unmodified	1495.7202	0.72016011	2120	Q9H4K7	MTG2	Mitochondrial ribosome-associated GTPase 2	yes	yes	0	0	0	14	0														2			10.518	10.518	2	2.6936E-09	2833	DP690-14	205.18	166.43			0.59817	0.73417	NaN	1	0	Median	14826000	9901300	4924200	1129	2120	1065	2168;2169	5250;5251;5252	5250		3	9606
AQAAAPASVPAQAPK	1	0	Unmodified	1376.7412	0.74121312	771	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	8	7	1														1		11.677	11.677	2	0.00021573	4143	DP690-15	124.39	100.3			0.88527	0.93516	20.404	2	0	Median	119600000	68040000	51560000	1130	771	1066	2170;2171	5253;5254;5255;5256;5257;5258;5259	5257		7	9606
AQAALQAQQVNR	0	1	Unmodified	1296.6898	0.68984626	812	P49848	TAF6	Transcription initiation factor TFIID subunit 6	yes	yes	0	0	0	11	0											1						10.909	10.909	2	0.0042811	3486	DP690-11	122.33	87.177			NaN	NaN	NaN	0	0	Median	11601000	0	11601000	1131	812	1067	2172	5260;5261	5260		2	9606
AQAAPEKEAAAVAPPER	1	1	Unmodified	1704.8795	0.87949752	1924	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	11	0											1						11.777	11.777	3	0.0075792	4717	DP690-11	99.413	66.096			NaN	NaN	NaN	0	0	Median	13601000	0	13601000	1132	1924	1068	2173	5262	5262		1	9606
AQACQENTQQSGLSDK	1	0	Unmodified	1763.7744	0.7744401	2538				yes	yes	0	0	0	7	0							1										10.495	10.495	2	0.0025833	2912	DP690-7	123.62	53.207	+		NaN	NaN	NaN	0	0	Median	153500000	0	153500000	1133	2538	1069	2174	5263;5264;5265	5264		3	9606
AQAEAQQPTFDALR	0	1	Unmodified	1544.7583	0.75831975	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								15.497	15.497	2	1.9069E-05	9103	DP690-9	158.06	158.06			0.49008	0.61414	NaN	1	0	Median	5976300	3425600	2550700	1134	1319	1070	2175	5266;5267;5268;5269	5266		4	9606
AQAEAQQPTFDALRDELR	0	2	Unmodified	2058.013	0.013030887	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	8.5	2.99		1							2	2	1						17.436	17.436	2;3	1.2399E-12	13050	DP690-10	190.34	122.82			0.81712	0.88573	13.821	5	0	Median	1892899999.9999998	1072099999.9999999	820760000	1135	1319	1071	2176;2177;2178;2179;2180;2181	5270;5271;5272;5273;5274;5275;5276;5277;5278;5279;5280;5281;5282;5283;5284;5285;5286;5287;5288;5289	5274		20	9606
AQAELNALKR	1	1	Unmodified	1112.6302	0.63020611	1958	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	1	9	4					1								1				11.041	11.041	3	0.00051005	3482	DP690-13	102.06	48.305			5.454	6.4079	NaN	1	0	Median	6054200	668720	5385500	1136	1958	1072	2182;2183	5290;5291;5292;5293	5291		4	9606
AQAEVEGLGK	1	0	Unmodified	1000.5189	0.51892433	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.3	0.471										2	1						11.845	11.845	2	0.00042361	4815	DP690-10	120.87	77.099			0.7711	0.86138	17.699	2	0	Median	1135800000	653400000	482450000	1137	1319	1073	2184;2185;2186	5294;5295;5296;5297;5298;5299	5295		6	9606
AQALAIETEAELQR	0	1	Unmodified	1541.8049	0.80493559	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														16.803	16.803	2	0.036697	11049	DP690-3	88.187	55.866			NaN	NaN	NaN	0	0	Median	5345800	0	5345800	1138	1293	1074	2187	5300	5300		1	9606
AQASGSAHSTPNLGHPEDSGVSAPAPGKEEGGPGPVSTPDNRK	2	1	Unmodified	4146.9591	0.95910442	238	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	2	11	0											1						12.273	12.273	6	0.046626	5312	DP690-11	10.423	10.423			NaN	NaN	NaN	0	0	Median	65141000	50215000	14926000	1139	238	1075	2188	5301	5301		0	9606
AQAVTQPVPLANKPVPAQSTFPSK	2	0	Unmodified	2475.3486	0.34855853	801	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	1	10	0										1							14.874	14.874	3	0.0021986	9355	DP690-10	96.903	73.907			NaN	NaN	NaN	0	0	Median	47028000	47028000	0	1140	801	1076	2189	5302;5303;5304	5302		3	9606
AQCETLSPDGLPEEQPQTTK	1	0	Unmodified	2228.0267	0.026691621	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		2															15.176	15.176	2	0.047297	7983	DP690-2	82.578	51.75			NaN	NaN	NaN	0	0	Median	0	0	0	1141	1555	1077	2190;2191	5305;5306	5306		2	9606
AQCYMDTEQYEEAVRDYEK	1	1	Oxidation (M)	2442.9944	0.99440521	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	1	1	4	0				1													16.349	16.349	3	0.032167	10396	DP690-4	61.477	49.585			1.0369	1.1826	NaN	1	0	Median	6665300	3389100	3276200	1142	1946	1078	2192	5307	5307	2477	0	9606
AQDAPLSLLQTQGGR	0	1	Unmodified	1553.8162	0.81616898	781	P48681	NES	Nestin	yes	yes	0	0	0	10.5	0.5										1	1						17.633	17.633	2	7.3946E-07	13358	DP690-10	187.58	146.15			0.7734	0.9433	NaN	1	0	Median	162480000	92646000	69833000	1143	781	1079	2193;2194	5308;5309;5310;5311;5312;5313	5309		6	9606
AQDEAFALQDVPLSSVVR	0	1	Unmodified	1943.9953	0.99525556	2463	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	15	0															3		20.731	20.731	2	4.096E-08	16009	DP690-15	162.88	116.15			NaN	NaN	NaN	0	0	Median	2017700	1003900	1013800	1144	2463	1080	2195;2196;2197	5314;5315;5316;5317	5315		4	9606
AQDEGLLSDVVPFKVPGK	2	0	Unmodified	1898.0149	0.014928368	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	1	13	0													1				19.936	19.936	3	0.00016612	15345	DP690-13	104.78	87.901			0.64571	0.72746	NaN	1	0	Median	46643000	26358000	20285000	1145	894	1081	2198	5318;5319	5318		2	9606
AQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSR	0	2	Unmodified	3628.7897	0.78968604	743	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	1	5	0					1												22.148	22.148	3	6.6032E-08	16997	DP690-5	98.189	88.888			0.84056	0.83013	NaN	1	0	Median	12306000	6821000	5484700	1146	743	1082	2199	5320;5321	5321		2	9606
AQDIQCGLQSR	0	1	Unmodified	1274.6037	0.60373336	1746	Q8WVJ2	NUDCD2	NudC domain-containing protein 2	yes	yes	0	0	0	8	0								1									12.107	12.107	2	0.0024528	4829	DP690-8	132.88	79.1			NaN	NaN	NaN	0	0	Median	1445300	1445300	0	1147	1746	1083	2200	5322;5323	5322		2	9606
AQDQGEKENPMR	1	1	Acetyl (Protein N-term)	1443.6412	0.64124108	1006	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	1	10	3.56							1	1							1		11.371	11.371	2	2.4067E-05	3972	DP690-15	144.7	120.47			1.0696	1.0089	12.313	3	0	Plateau	27555000	13564000	13991000	1148	1006	1084	2201;2202;2203	5324;5325;5326;5327;5328;5329;5330;5331;5332;5333	5326		10	9606
AQDQGEKENPMR	1	1	Acetyl (Protein N-term);Oxidation (M)	1459.6362	0.6361557	1006	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	1	1	15	0															1		11.387	11.387	2	0.060763	4131	DP690-15	53.751	22.862			NaN	NaN	NaN	0	0	Median	2461500	0	2461500	1149	1006	1084	2204	5334	5334		1	9606
AQEALDAVSTLEEGHAQYLTSLADASALVAALTR	0	1	Unmodified	3484.7686	0.76855667	237	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	11	0											1						25.898	25.898	3	0.002268	23959	DP690-11	63.44	36.343			NaN	NaN	NaN	0	0	Median	925650	925650	0	1150	237	1085	2205	5335	5335		1	9606
AQEDEVKRLK	2	1	Unmodified	1214.6619	0.66190017	1749	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	2	2	0		1															11.049	11.049	3	0.030648	3209	DP690-2	72.321	7.0872			NaN	NaN	NaN	0	0	Median	0	0	0	1151	1749	1086	2206	5336	5336		1	9606
AQEGGGSEVFQELK	1	0	Unmodified	1477.7049	0.7048872	1680	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	0	12	0												1					16.13	16.13	2	0.005674	10612	DP690-12	112.5	52.434			NaN	NaN	NaN	0	0	Median	40381000	40381000	0	1152	1680	1087	2207	5337	5337		1	9606
AQEILSQLPIK	1	0	Unmodified	1238.7234	0.72343779	675	P35754	GLRX	Glutaredoxin-1	yes	yes	0	0	0	8	0								1									17.952	17.952	2	9.8176E-05	11408	DP690-8	131.52	94.452			0.59111	0.68124	NaN	1	0	Median	5864900	3307300	2557600	1153	675	1088	2208	5338;5339;5340;5341	5341		4	9606
AQELGHSQSALASAQR	0	1	Unmodified	1652.823	0.82304527	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	9.75	0.433									1	3							10.928	10.928	2;3	3.8943E-09	3669	DP690-10	179.66	158.4			0.89039	1.0897	8.583	2	0	Median	219680000	119360000	100330000	1154	1301	1089	2209;2210;2211;2212	5342;5343;5344;5345;5346;5347;5348;5349	5343		8	9606
AQENYEGSEEVSPPQTK	1	0	Unmodified	1891.8436	0.84356552	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	3.6	3.2		4								1							12.913	12.913	2	2.1209E-11	5255	DP690-2	201.08	155.97			1.0985	1.101	NaN	1	0	Median	4578000	2234100	2343900	1155	1803	1090	2213;2214;2215;2216;2217	5350;5351;5352;5353;5354;5355	5355		6	9606
AQEPESGLSEETQVK	1	0	Unmodified	1630.7686	0.76860967	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.25	2.99		1							3	1	1	2					13.391	13.391	2	4.6657E-18	6840	DP690-11	207.34	153.08			0.82464	0.95472	7.9601	5	0	Median	396650000	206170000	190470000	1156	1046	1091	2218;2219;2220;2221;2222;2223;2224;2225	5356;5357;5358;5359;5360;5361;5362;5363;5364;5365;5366;5367;5368;5369;5370;5371;5372;5373;5374;5375;5376;5377	5362		22	9606
AQETEAAPSQAPADEPEPESAAAQSQENQDTRPK	1	1	Unmodified	3577.6041	0.60407012	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	1	4	0				1													12.785	12.785	3	1.7118000000000002E-29	5613	DP690-4	179.07	179.07			0.49907	0.5692	NaN	1	0	Median	40819000	25694000	15125000	1157	2405	1092	2226	5378;5379;5380;5381;5382;5383;5384	5381		7	9606
AQEYDSSFPNWEFAR	0	1	Unmodified	1845.7958	0.79582747	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11.5	0.5											1	1					19.609	19.609	2	1.0949E-19	15936	DP690-11	284.1	254.17			0.80655	0.96989	0.93734	2	0	Median	137220000	78577000	58644000	1158	1950	1093	2227;2228	5385;5386;5387;5388;5389;5390;5391	5387		7	9606
AQFAQPEILIGTIPGAGGTQR	0	1	Unmodified	2124.1328	0.13275209	622	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	7	0							1										20.174	20.174	2	3.5309E-19	14801	DP690-7	189.33	169.58			0.78012	0.90492	NaN	1	0	Median	11512000	6348800	5163500	1159	622	1094	2229	5392;5393;5394;5395	5393		4	9606
AQFEGIVTDLIR	0	1	Unmodified	1360.7351	0.73506511	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	8	4				1								1					20.936	20.936	2	0.00022229	15758	DP690-4	170.47	123.28			1.3952	1.627	91.771	2	0	Median	77396000	37199000	40197000	1160	695	1095	2230;2231	5396;5397;5398;5399;5400;5401;5402	5400		7	9606
AQFEQLKDGK	2	0	Unmodified	1162.5982	0.59823728	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0										2							11.005	11.005	2;3	9.7593E-05	3679	DP690-10	110.39	79.775			0.9249	1.1626	4.9021	2	0	Median	153130000	87315000	65813000	1161	1319	1096	2232;2233	5403;5404;5405;5406;5407;5408;5409	5404		7	9606
AQGATGEVYCPSGEK	1	0	Unmodified	1552.6828	0.68277155	2097	Q9H1B7	IRF2BPL	Interferon regulatory factor 2-binding protein-like	yes	yes	0	0	0	7	4			1								1						11.929	11.929	2	0.004955	5079	DP690-11	130.1	103.98			NaN	NaN	NaN	0	0	Median	2566400	2566400	0	1162	2097	1097	2234;2235	5410;5411	5410		2	9606
AQGPQQQPGSEGPSYAK	1	0	Unmodified	1728.8067	0.80672651	1390	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	12	4.32						1								1		1	10.745	10.745	2	7.158E-23	3053	DP690-14	258.78	144.38			0.73473	0.84228	17.946	2	0	Median	68386000	42146000	26240000	1163	1390	1098	2236;2237;2238	5412;5413;5414;5415;5416;5417;5418	5412		7	9606
AQGSHQIDFQVLHDLR	0	1	Acetyl (Protein N-term)	1904.9493	0.94930842	2262	Q9NYJ8	TAB2	TGF-beta-activated kinase 1 and MAP3K7-binding protein 2	yes	yes	1	0	0	3	0			1														18.219	18.219	3	0.01958	12878	DP690-3	77.562	47.52			NaN	NaN	NaN	0	0	Median	3988600	0	3988600	1164	2262	1099	2239	5419	5419		1	9606
AQHQQALSSLELLNVLFR	0	1	Unmodified	2066.1273	0.12727278	1979	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	10	0										1							22.737	22.737	3	2.0919E-13	20336	DP690-10	153.92	128.58			0.96496	1.2072	NaN	1	0	Median	36093000	18672000	17421000	1165	1979	1100	2240	5420;5421;5422	5420		3	9606
AQIAGYLYGVSPPDNPQVK	1	0	Unmodified	2016.0316	0.031641064	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							18.175	18.175	2	2.6262E-05	14080	DP690-10	141.65	106.44			NaN	NaN	NaN	0	0	Median	26870000	0	26870000	1166	1492	1101	2241	5423	5423		1	9606
AQIEQVIANCEHK	1	0	Unmodified	1538.7511	0.75112588	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										1							13.939	13.939	3	0.0001248	8013	DP690-10	86.699	70.434			0.92919	1.1477	NaN	1	0	Median	142180000	85619000	56565000	1167	1783	1102	2242	5424;5425	5425		2	9606
AQIFANTVDNAR	0	1	Unmodified	1318.663	0.6629628	388	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	13	0													1				14.483	14.483	2	0.0001949	7957	DP690-13	172.59	137.3			0.71003	0.81903	NaN	1	0	Median	191640000	103680000	87957000	1168	388	1103	2243	5426;5427;5428;5429	5426		4	9606
AQIHDLVLVGGSTR	0	1	Unmodified	1464.8049	0.80487601	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	8	4				2								2					15.075	15.075	2;3	7.3419E-05	9128	DP690-12	143.31	143.31			1.1697	1.3001	32.758	4	0	Median	388220000	190900000	197320000	1169	449	1104	2244;2245;2246;2247	5430;5431;5432;5433;5434;5435;5436;5437;5438;5439;5440;5441	5430		12	9606
AQIHEQNPSVEVVYYNK	1	0	Unmodified	2016.9905	0.99050453	2030	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	14	0														2			14.18	14.18	2;3	1.7524E-22	7792	DP690-14	246.25	205.74			0.73841	0.86034	4.2531	2	0	Median	362410000	188620000	173780000	1170	2030	1105	2248;2249	5442;5443;5444;5445;5446;5447;5448	5448		7	9606
AQIIELLCIVEALK	1	0	Unmodified	1611.927	0.92696498	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	11	0											1						25.929	25.929	2	0.00021495	23856	DP690-11	116.54	94.21			0.89495	1.0678	NaN	1	0	Median	3786400	1950500	1835800	1171	2501	1106	2250	5449;5450;5451;5452	5449		4	9606
AQIIELLCIVEALKK	2	0	Unmodified	1740.0219	0.021928001	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	1	11	0											1						23.256	23.256	3	3.6528E-06	20812	DP690-11	180.3	162.83			0.77521	0.93106	NaN	1	0	Median	14990000	8735600	6254000	1172	2501	1107	2251	5453;5454;5455;5456;5457;5458;5459;5460	5454		8	9606
AQKDEEKMEIQEIQLK	3	0	Oxidation (M)	1974.9932	0.99320665	434	P09493	TPM1	Tropomyosin alpha-1 chain	yes	yes	0	1	2	15	0															1		13.336	13.336	3	0.00052151	6527	DP690-15	91.592	91.592			0.69144	0.75321	NaN	1	0	Median	23525000	13632000	9892800	1173	434	1108	2252	5461;5462;5463	5462	504	3	9606
AQLADSFHLQQFFR	0	1	Unmodified	1706.8529	0.85288884	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							19.948	19.948	3	1.4893E-05	16696	DP690-10	125.82	108.75			0.81103	1.0089	NaN	1	0	Median	81309000	41194000	40115000	1174	1236	1109	2253	5464;5465;5466;5467	5464		4	9606
AQLELEVSK	1	0	Unmodified	1015.555	0.55497548	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														14.46	14.46	2	0.019309	7934	DP690-3	80.165	29.462			0.86853	0.92783	NaN	1	0	Median	24470000	14104000	10366000	1175	1293	1110	2254	5468;5469;5470	5469		3	9606
AQLEPVASPAK	1	0	Unmodified	1109.6081	0.60807369	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							12.145	12.145	2	0.00015084	5309	DP690-10	172.59	108.03			0.68099	0.76926	4.4906	2	0	Median	560830000	330350000	230480000	1176	1319	1111	2255;2256	5471;5472;5473;5474;5475;5476;5477;5478	5471		8	9606
AQLEQGEPVLETPVESQQHEIESR	0	1	Unmodified	2732.3253	0.32531648	857	P52630	STAT2	Signal transducer and activator of transcription 2	yes	yes	0	0	0	3	0			1														15.833	15.833	3	2.0321E-10	9769	DP690-3	153.65	153.65			0.71473	0.82049	NaN	1	0	Median	16115000	9862900	6252000	1177	857	1112	2257	5479;5480;5481;5482	5479		4	9606
AQLEQSVEENKER	1	1	Unmodified	1558.7587	0.75871368	1924	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	11	0											1						10.731	10.731	3	0.0022	3166	DP690-11	101.32	63.527			0.60116	0.7321	NaN	1	0	Median	55819000	30458000	25361000	1178	1924	1113	2258	5483;5484	5483		2	9606
AQLLQPTLEINPR	0	1	Unmodified	1491.8409	0.84092717	1171	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	4	0				1													17.866	17.866	2	0.0018199	12209	DP690-4	93.561	73.934			0.99121	1.1505	NaN	1	0	Median	6209500	3280200	2929300	1179	1171	1114	2259	5485	5485		1	9606
AQLMADFQAGR	0	1	Oxidation (M)	1222.5765	0.57645598	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9.5	0.5									1	1							13.908	13.908	2	0.001659	6947	DP690-9	106.68	91.041			0.93701	1.0805	12.406	2	0	Median	361020000	181820000	179210000	1180	1319	1115	2260;2261	5486;5487;5488;5489;5490	5490	2012	5	9606
AQLMADFQAGR	0	1	Unmodified	1206.5815	0.58154136	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0										1							16.092	16.092	2	0.0058121	11177	DP690-10	86.624	47.371			0.98432	1.2076	NaN	1	0	Median	150490000	80644000	69845000	1181	1319	1115	2262	5491;5492	5492		2	9606
AQLQQVEAALSGNGENEDLLK	1	0	Unmodified	2226.1128	0.11280451	281	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	0	15	0															1		20.102	20.102	2	6.4828E-44	15275	DP690-15	284.51	284.51			0.84198	0.99315	NaN	1	0	Median	18849000	10119000	8729200	1182	281	1116	2263	5493;5494;5495;5496;5497	5494		5	9606
AQLSTILEEEKAQQEER	1	1	Unmodified	2001.0015	0.0014631481	1117	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	1	11	0											1						15.602	15.602	3	0.0014755	10227	DP690-11	137.17	84.127			NaN	NaN	NaN	0	0	Median	46604000	46604000	0	1183	1117	1117	2264	5498;5499	5498		2	9606
AQMSNFLASTTNQQEIASLDVK	1	0	Oxidation (M)	2411.1639	0.1638538	1797	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	1	0	12	0												1					18.64	18.64	2	0.017965	14033	DP690-12	89.982	63.751			NaN	NaN	NaN	0	0	Median	0	0	0	1184	1797	1118	2265	5500	5500	2374	1	9606
AQNAPSPGQSQADSSSLEQEK	1	0	Unmodified	2157.9774	0.97743324	312	O95248	SBF1	Myotubularin-related protein 5	yes	yes	0	0	0	10	0										1							12.254	12.254	2	2.4077E-55	5501	DP690-10	285.04	254.17			NaN	NaN	NaN	0	0	Median	11982000	11982000	0	1185	312	1119	2266	5501;5502	5501		2	9606
AQNISSNANMLR	0	1	Unmodified	1317.6459	0.64593253	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							13.44	13.44	2	0.0036317	7247	DP690-10	126.31	81.996			NaN	NaN	NaN	0	0	Median	23608000	0	23608000	1186	1240	1120	2267	5503;5504	5503		2	9606
AQNKPFYVVAESFK	2	0	Unmodified	1626.8406	0.84059282	1265	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	1	14	0														1			16.882	16.882	3	0.0026978	11562	DP690-14	76.311	52.823			0.94116	1.0524	NaN	1	0	Median	102930000	54814000	48119000	1187	1265	1121	2268	5505	5505		1	9606
AQNSELASTANMLR	0	1	Unmodified	1504.7304	0.73039044	386	P05412	JUN	Transcription factor AP-1	yes	yes	0	0	0	14	0														1			16.228	16.228	2	7.8049E-05	10565	DP690-14	149.49	119.17			1.3193	1.5986	NaN	1	0	Median	38924000	22021000	16903000	1188	386	1122	2269	5506;5507	5506		2	9606
AQNTWGCGNSLR	0	1	Unmodified	1362.6099	0.60988137	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.5	0.5											1	1					13.359	13.359	2	9.9879E-08	6604	DP690-12	202.2	172.73			0.82366	0.94744	NaN	1	0	Median	288080000	225250000	62829000	1189	359	1123	2270;2271	5508;5509;5510;5511;5512;5513	5510		6	9606
AQPAITTGGSAAVLAGTIK	1	0	Unmodified	1725.9625	0.96249887	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	9	0									1								17.365	17.365	2	0.075522	11580	DP690-9	81.632	55.1			NaN	NaN	NaN	0	0	Median	0	0	0	1190	1891	1124	2272	5514	5514		1	9606
AQPAQPADEPAEKADEPMEH	1	0	Oxidation (M)	2175.9379	0.93787661	586	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	1	1	7	0							1										10.635	10.635	3	0.0003192	3064	DP690-7	91.065	82.018			0.67987	0.74097	NaN	1	0	Median	17094000	10140000	6953700	1191	586	1125	2273	5515;5516;5517;5518	5515	776	4	9606
AQPPDYTFPSGSGAHFPQVPGGAVR	0	1	Unmodified	2539.2244	0.22442065	2003	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	13	0													1				17.486	17.486	3	0.050109	12110	DP690-13	56.684	31.809			NaN	NaN	NaN	0	0	Median	12630000	12630000	0	1192	2003	1126	2274	5519	5519		1	9606
AQPSASLGVGYR	0	1	Unmodified	1204.62	0.62003536	1910	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	11.5	0.5											1	1					13.796	13.796	2	0.013642	7686	DP690-11	70.552	51.198			0.74964	0.89012	2.6346	2	0	Median	148320000	77767000	70556000	1193	1910	1127	2275;2276	5520;5521	5520		2	9606
AQPTPSSSATQSKPTPVKPNYALK	3	0	Unmodified	2497.3177	0.31765233	957	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	2	14	0														2			11.674	11.674	3;4	0.018553	4349	DP690-14	95.227	78.891			0.53731	0.5511	NaN	1	0	Median	63663000	41713000	21950000	1194	957	1128	2277;2278	5522;5523;5524;5525	5525		4	9606
AQPYDPNFYDETYDYGGFTMMFDDRR	0	2	Oxidation (M)	3229.307	0.30696558	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	1	12	0												1					20.754	20.754	3	0.00050597	16812	DP690-12	65.954	65.954			0.81406	0.92301	NaN	1	0	Median	11589000	6349200	5239800	1195	959	1129	2279	5526;5527;5528	5526	1473;1474	3	9606
AQQAADKYLYVDK	2	0	Acetyl (Protein N-term)	1553.7726	0.77257283	668	P35579	MYH9	Myosin-9	yes	yes	1	0	1	6	4		1								1							16.88	16.88	2	2.2651E-11	9965	DP690-2	216.91	144.31			1.0385	1.2005	3.7903	2	0	Median	66341000	32395000	33945000	1196	668	1130	2280;2281	5529;5530;5531;5532;5533	5530		4	9606
AQQLAEVEVK	1	0	Unmodified	1113.603	0.60298831	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														13.273	13.273	2	0.0026459	6384	DP690-3	97.965	59.212			0.89082	0.9499	NaN	1	0	Median	12958000	6487400	6470400	1197	1293	1131	2282	5534	5534		1	9606
AQQLAEVEVKK	2	0	Unmodified	1241.698	0.69795133	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	1	3	0			1														10.897	10.897	3	0.051806	3267	DP690-3	45.257	10.484			0.85515	0.92908	NaN	1	0	Median	12657000	6561800	6094800	1198	1293	1132	2283	5535;5536	5535		2	9606
AQQLLDAVEQR	0	1	Unmodified	1269.6677	0.66771383	1514	Q6ZSJ8	C1orf122	Uncharacterized protein C1orf122	yes	yes	0	0	0	15	0															1		15.871	15.871	2	0.0016523	9894	DP690-15	136.63	80.072			NaN	NaN	NaN	0	0	Median	16099000	0	16099000	1199	1514	1133	2284	5537;5538	5538		2	9606
AQQMHTGPVLDVCWSDDGSK	1	0	Oxidation (M)	2245.9732	0.97321626	1045	P78406	RAE1	mRNA export factor	yes	yes	0	1	0	14	0														1			15.903	15.903	3	0.00017325	10106	DP690-14	101.53	79.759			0.79297	0.96007	NaN	1	0	Median	73583000	43574000	30009000	1200	1045	1134	2285	5539;5540	5540	1580	2	9606
AQQMHTGPVLDVCWSDDGSK	1	0	Unmodified	2229.9783	0.97830164	1045	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	14	0														1			16.562	16.562	3	0.012244	11008	DP690-14	96.55	83.66			0.96926	1.164	NaN	1	0	Median	113930000	58795000	55131000	1201	1045	1134	2286	5541	5541		0	9606
AQQNNVEHKVETFSGVYK	2	0	Unmodified	2077.0229	0.022867292	962	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	1	15	0															2		13.943	13.943	3;4	5.1408E-05	7280	DP690-15	115.87	103.15			0.93688	1.073	1.86	2	0	Median	172360000	85830000	86525000	1202	962	1135	2287;2288	5542;5543;5544;5545;5546;5547;5548;5549;5550	5543		9	9606
AQSINITELNLPQLEMLK	1	0	Acetyl (Protein N-term);Oxidation (M)	2112.1137	0.11365613	1937	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	1	1	0	12	4								2								2	24.405	24.405	2	4.9455E-05	18092	DP690-8	151.99	110.78			NaN	NaN	NaN	0	0	Median	0	0	0	1203	1937	1136	2289;2290;2291;2292	5551;5552;5553;5554	5554	2471	4	9606
AQSSQDAVSSMNLFDLGGQYLR	0	1	Oxidation (M)	2402.1172	0.11723796	2348	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	1	0	12	0												1					21.08	21.08	2	1.9357E-14	17231	DP690-12	161.82	132.85			1.0558	1.2863	NaN	1	0	Median	9014300	4261500	4752800	1204	2348	1137	2293	5555;5556;5557;5558;5559;5560	5557	2785	6	9606
AQTEGINISEEALNHLGEIGTK	1	0	Unmodified	2323.1656	0.16556836	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	13	0													1				19.174	19.174	3	2.9969E-15	14423	DP690-13	166.06	166.06			0.86775	0.97849	NaN	1	0	Median	146520000	76527000	69989000	1205	2431	1138	2294	5561;5562;5563	5562		3	9606
AQTGAPCLSFDIVR	0	1	Unmodified	1533.761	0.76096229	1972	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	13	0													2				18.842	18.842	2	0.017563	13962	DP690-13	103.43	59.918			NaN	NaN	NaN	0	0	Median	0	0	0	1206	1972	1139	2295;2296	5564;5565	5565		2	9606
AQTLPTSVVTITSESSPGKR	1	1	Unmodified	2058.0957	0.095697884	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							15.751	15.751	3	6.5406E-10	10566	DP690-10	144.17	103.93			NaN	NaN	NaN	0	0	Median	34971000	34971000	0	1207	1080	1140	2297	5566;5567	5566		2	9606
AQTPAFDKPK	2	0	Acetyl (Protein N-term)	1143.5924	0.59242362	357	P00813	ADA	Adenosine deaminase	yes	yes	1	0	1	6	0						1											12.764	12.764	2	0.0011495	5328	DP690-6	91.087	54.327			0.64318	0.6649	NaN	1	0	Median	33632000	19944000	13688000	1208	357	1141	2298	5568;5569;5570;5571	5570		4	9606
AQTTAQASTPGQPPPQPQAPSHAAGQSALPQR	0	1	Unmodified	3175.5759	0.57588571	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	9.5	0.5									1	1							12.671	12.671	3	4.6403E-27	5445	DP690-9	169.23	129.54			0.41116	0.51496	NaN	1	0	Median	51930000	34276000	17653000	1209	1891	1142	2299;2300	5572;5573;5574;5575;5576	5576		5	9606
AQTYELQESNVQLK	1	0	Unmodified	1649.8261	0.82606496	2296	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	13	0													1				15.381	15.381	2	1.5003E-15	9295	DP690-13	301.11	270.04			0.93333	1.0624	NaN	1	0	Median	114890000	56907000	57984000	1210	2296	1143	2301	5577;5578;5579;5580	5580		4	9606
AQVADVVVSR	0	1	Unmodified	1042.5771	0.57710791	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														13.354	13.354	2	4.2671E-05	5748	DP690-2	183.72	95.352			0.92115	0.98629	6.872	2	0	Median	235240000	123850000	111390000	1211	789	1144	2302;2303	5581;5582;5583;5584;5585;5586;5587;5588;5589	5584		9	9606
AQVEEFLAQHGSEYQSVK	1	0	Unmodified	2048.9803	0.98033378	1097	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	11	0											1						16.051	16.051	3	0.019498	11003	DP690-11	78.225	50.728			NaN	NaN	NaN	0	0	Median	71641000	0	71641000	1212	1097	1145	2304	5590	5590		1	9606
AQVEQELTTLR	0	1	Unmodified	1286.683	0.68302954	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							15.812	15.812	2	0.00018135	10811	DP690-10	123.75	83.025			0.82691	0.94275	4.4882	2	0	Median	424450000	229530000	194930000	1213	1319	1146	2305;2306	5591;5592;5593;5594;5595	5592		5	9606
AQVFSCPACR	0	1	Unmodified	1194.5274	0.5273973	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	no	no	0	0	0	11	0											1						12.76	12.76	2	8.4023E-05	6162	DP690-11	162.25	140.51			0.74269	0.86443	NaN	1	0	Median	164710000	89665000	75045000	1214	1932	1147	2307	5596;5597;5598;5599	5599		4	9606
AQVQLQLFK	1	0	Unmodified	1073.6233	0.62332982	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							17.567	17.567	2	0.010608	13189	DP690-10	88.942	73.061			1.2518	1.5456	NaN	1	0	Median	126490000	61213000	65277000	1215	1285	1148	2308	5600;5601	5600		2	9606
AQVSLLIR	0	1	Unmodified	898.56	0.56000128	1948	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	14	0														1			16.021	16.021	2	0.044393	10268	DP690-14	122.13	57.325			0.8839	1.062	NaN	1	0	Median	81268000	42170000	39098000	1216	1948	1149	2309	5602	5602		0	9606
AQVTELEDELTAAEDAK	1	0	Unmodified	1831.8687	0.86871764	1543	Q7Z406	MYH14	Myosin-14	yes	yes	0	0	0	7	0							1										10.756	10.756	2	0.064059	3247	DP690-7	87.184	4.1029			NaN	NaN	NaN	0	0	Median	0	0	0	1217	1543	1150	2310	5603	5603		1	9606
AQYDDIVTR	0	1	Unmodified	1079.5247	0.52473799	26	CON__O43790;CON__Q14533;O43790;Q14533	KRT86;KRT81	Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb1	yes	no	0	0	0	11	4							1								1		13.914	13.914	2	0.003138	7335	DP690-15	107.29	86.67		+	0.7596	0.83109	4.0526	2	0	Median	217300000	116700000	100610000	1218	26	1151	2311;2312	5604;5605;5606	5604		3	9606
AQYEDIANR	0	1	Unmodified	1078.5043	0.5043369	38	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	no	no	0	0	0	12.5	0.5												1	1				12.358	12.358	2	0.00033999	5023	DP690-13	199.29	153.16		+	0.96445	1.1226	15.43	2	0	Median	270090000	143190000	126900000	1219	38	1152	2313;2314	5607;5608;5609;5610;5611;5612;5613	5611		7	9606
AQYEDIAQK	1	0	Unmodified	1064.5138	0.51383895	369	P04264	KRT1	Keratin, type II cytoskeletal 1	yes	yes	0	0	0	7.71	5.55	1	1		1			1		1						1	1	11.738	11.738	2	5.6797E-10	4215	DP690-4	176.09	74.486		+	NaN	NaN	NaN	0	0	Median	449350000	449350000	0	1220	369	1153	2315;2316;2317;2318;2319;2320;2321	5614;5615;5616;5617;5618;5619;5620;5621;5622;5623;5624;5625	5621		12	9606
AQYEEIANR	0	1	Unmodified	1092.52	0.51998696	43	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	1	0	1																12.209	12.209	2	3.5356E-06	4038	DP690-1	163.9	74.601		+	NaN	NaN	NaN	0	0	Median	11843000	11843000	0	1221	43	1154	2322	5626;5627	5626		2	9606
AQYEEIAQR	0	1	Unmodified	1106.5356	0.53563702	44;31;368;25	P35908;CON__P35908v2;CON__P35908;Q01546;CON__P02538;P02538;CON__P48668;P48668;P04259;CON__ENSEMBL:ENSBTAP00000038253	KRT2;KRT76;KRT6A;KRT6C;KRT6B	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6B	no	no	0	0	0	9.8	3.37						1		1	1	1						1	12.216	12.216	2	1.9657E-10	4856	DP690-9	187.34	124.75		+	NaN	NaN	NaN	0	0	Median	227230000	227230000	0	1222	44;31;368;25	1155	2323;2324;2325;2326;2327	5628;5629;5630;5631;5632;5633;5634;5635;5636;5637	5636		10	9606
AQYEQTLAELHR	0	1	Unmodified	1457.7263	0.72629134	2376	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	13	0													2				14.594	14.594	2;3	9.8476E-05	8145	DP690-13	118.9	104.65			0.79587	0.94803	7.2383	2	0	Median	219310000	122970000	96343000	1223	2376	1156	2328;2329	5638;5639;5640	5639		3	9606
AQYYLPDGSTIEIGPSR	0	1	Unmodified	1865.9159	0.9159426	942	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	14	0														1			20.369	20.369	2	5.889E-05	16073	DP690-14	124.12	104.62			0.85855	1.0443	NaN	1	0	Median	19610000	11102000	8508000	1224	942	1157	2330	5641;5642;5643;5644	5641		4	9606
ARDDLITDLLNEAK	1	1	Unmodified	1585.8312	0.83115034	679	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	yes	yes	0	0	1	15	0															1		21.047	21.047	2	0.00079697	16416	DP690-15	116.98	84.365			0.78498	0.91884	NaN	1	0	Median	2706400	1425800	1280600	1225	679	1158	2331	5645;5646;5647	5646		3	9606
AREEFRPTIYSNVIK	1	2	Unmodified	1821.9737	0.97373226	1273	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	2	14	0														1			14.507	14.507	3	0.0018738	8194	DP690-14	82.705	82.705			0.6883	0.79034	NaN	1	0	Median	88224000	51571000	36653000	1226	1273	1159	2332	5648;5649	5648		2	9606
ARFEELCSDLFR	0	2	Unmodified	1541.7297	0.72966216	449;508	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	1	8	4				1								1					18.033	18.033	3	0.00068924	13267	DP690-12	97.86	79.222			1.3291	1.4487	29.668	2	0	Median	66165000	30612000	35552000	1227	508;449	1160	2333;2334	5650;5651;5652;5653;5654	5650		5	9606
ARFEELNADLFR	0	2	Unmodified	1479.747	0.74702678	463	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	9.33	3.82				2							1	2	1				17.668	17.668	2;3	4.6736E-07	11953	DP690-4	199.8	199.8			0.90233	1.0231	41.484	5	0	Median	1268400000	567190000	701170000	1228	463	1161	2335;2336;2337;2338;2339;2340	5655;5656;5657;5658;5659;5660;5661;5662;5663;5664;5665;5666;5667;5668;5669;5670;5671;5672;5673	5672		19	9606
ARGPEEEEIGSPEPMAAPASASQK	1	1	Oxidation (M)	2454.1333	0.13328196	1296	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	1	1	12	0												1					12.54	12.54	3	0.031289	5533	DP690-12	68.158	30.487			NaN	NaN	NaN	0	0	Median	7143800	7143800	0	1229	1296	1162	2341	5674	5674	1979	1	9606
ARHEVLLISAEQDKR	1	2	Unmodified	1763.9642	0.9642302	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	2	10	0										1							11.253	11.253	4	0.00060976	4021	DP690-10	105.63	92.797			0.71036	0.7986	NaN	1	0	Median	274380000	160920000	113460000	1230	1071	1163	2342	5675;5676;5677	5677		3	9606
ARPAEVGGMQLR	0	2	Oxidation (M)	1299.6718	0.67175335	649	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	1	1	8	0								1									12.337	12.337	3	0.018646	5062	DP690-8	59.975	25.202			0.70156	0.74123	NaN	1	0	Median	9151700	5237000	3914700	1231	649	1164	2343	5678	5678	906	1	9606
ARPAEVGGMQLR	0	2	Unmodified	1283.6768	0.67683873	649	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	1	8	0								2									12.335	12.335	2;3	0.027741	5124	DP690-8	108.7	66.302			NaN	NaN	NaN	0	0	Median	14747000	0	14747000	1232	649	1164	2344;2345	5679;5680;5681	5681		3	9606
ARPFPDGLAEDIDKGEVSAR	1	2	Unmodified	2142.0705	0.070545766	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	2	7	4			2								2						16.438	16.438	3;4	4.2438E-10	10328	DP690-3	154.72	140.06			0.6844	0.74765	14.765	3	0	Median	344090000	226070000	118030000	1233	483	1165	2346;2347;2348;2349	5682;5683;5684;5685;5686;5687;5688;5689;5690;5691;5692;5693;5694	5689		13	9606
ARQEELYSELQAR	0	2	Unmodified	1591.7954	0.79543354	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10.3	1.03									2	2	2	1					14.37	14.37	2;3	3.788E-10	8583	DP690-10	222.25	176.28			0.90445	1.0772	14.558	5	0	Median	1366000000	711930000	654100000	1234	1319	1166	2350;2351;2352;2353;2354;2355;2356	5695;5696;5697;5698;5699;5700;5701;5702;5703;5704;5705;5706;5707;5708;5709;5710;5711;5712;5713;5714	5701		20	9606
ARQPLSEASNQQPLSGGEEK	1	1	Unmodified	2125.04	0.039973919	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	11	1.85									1	3	1	1			1		12.088	12.088	2;3	3.002E-14	5296	DP690-10	195.23	167.26			0.75005	0.90965	25.172	6	0	Median	380070000	214680000	165390000	1235	2190	1167	2357;2358;2359;2360;2361;2362;2363	5715;5716;5717;5718;5719;5720;5721;5722;5723;5724;5725;5726;5727;5728;5729;5730;5731	5719		17	9606
ARVEENFLK	1	1	Unmodified	1104.5928	0.59275797	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	1	12	0												1					12.758	12.758	2	0.0090832	5851	DP690-12	111.06	42.69			0.87219	1.0213	NaN	1	0	Median	101330000	55860000	45473000	1236	1814	1168	2364	5732;5733;5734	5733		3	9606
ARVPQTFTVDCSQAGR	0	2	Unmodified	1791.8686	0.86861526	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	6	4		1								1							13.397	13.397	3	1.1424E-06	7210	DP690-10	139.34	121.72			0.99812	1.1888	NaN	1	0	Median	220640000	120600000	100040000	1237	1270	1169	2365;2366	5735;5736;5737	5735		3	9606
ASAAPKPEPVPVQK	2	0	Unmodified	1417.7929	0.79291434	1869	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	1	12	0												1					10.424	10.424	3	0.00072058	2772	DP690-12	92.151	79.769			0.58467	0.66237	NaN	1	0	Median	101000000	61886000	39112000	1238	1869	1170	2367	5738	5738		1	9606
ASADLMSYCEEHAR	0	1	Oxidation (M)	1654.6716	0.67155493	2313	Q9UBI6	GNG12	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12	yes	yes	0	1	0	16	0																3	12.136	12.136	2;3	1.1048E-05	4826	DP690-16	130.19	119.85			0.90741	1.0178	NaN	1	0	Median	59725000	31808000	27918000	1239	2313	1171	2368;2369;2370	5739;5740;5741;5742	5739	2757	4	9606
ASAEGPLLGPEAAPSGEGAGSK	1	0	Unmodified	1951.9487	0.9486993	1982	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	0	15	0															1		15.001	15.001	2	3.8019E-19	8715	DP690-15	183.75	142.99			0.76694	0.90418	NaN	1	0	Median	12932000	6581400	6350700	1240	1982	1172	2371	5743;5744;5745;5746;5747;5748;5749	5743		7	9606
ASAGHAVSIAQDDAGADDWETDPDFVNDVSEK	1	0	Unmodified	3331.4389	0.43890227	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	11	0											1						18.385	18.385	3	5.0442E-22	14306	DP690-11	175.26	166.96			0.63722	0.74609	NaN	1	0	Median	131750000	72929000	58823000	1241	1267	1173	2372	5750;5751;5752;5753;5754	5750		5	9606
ASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQR	1	1	Unmodified	3744.6412	0.64118391	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	1	11	0											1						17.487	17.487	4	7.3446E-14	12990	DP690-11	144.36	136.86			0.85043	0.99375	NaN	1	0	Median	100770000	54854000	45913000	1242	1267	1174	2373	5755	5755		1	9606
ASAGHVAVSSPTPETGPLQR	0	1	Unmodified	1960.9967	0.99665254	731	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	10	0										1							13.058	13.058	3	6.0366E-05	6661	DP690-10	87.668	67.849			0.63323	0.78801	NaN	1	0	Median	79888000	44537000	35351000	1243	731	1175	2374	5756;5757	5757		2	9606
ASALEQFVNSVR	0	1	Acetyl (Protein N-term)	1361.6939	0.69392858	2409	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	1	0	0	6	0						2											25.286	25.286	2	0.00058688	19668	DP690-6	123.79	53.839			NaN	NaN	NaN	0	0	Median	0	0	0	1244	2409	1176	2375;2376	5758;5759	5759		2	9606
ASAPSPNAQVACDHCLK	1	0	Unmodified	1824.8247	0.82470153	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	10.2	2.63				1					1	1	2	2	1				11.709	11.709	2;3	4.2696E-09	4450	DP690-12	166.62	140.71			0.78991	0.87604	13.782	6	0	Median	646780000	352160000	294610000	1245	1269	1177	2377;2378;2379;2380;2381;2382;2383;2384	5760;5761;5762;5763;5764;5765;5766;5767;5768;5769;5770;5771;5772;5773;5774;5775;5776;5777;5778;5779;5780;5781;5782	5773		23	9606
ASAQDAGDHVQPPEGR	0	1	Unmodified	1633.7445	0.7444606	1826	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	0	14	0														1			10.489	10.489	3	5.7626E-05	2790	DP690-14	118.71	105.87			0.66224	0.79381	NaN	1	0	Median	94032000	55966000	38066000	1246	1826	1178	2385	5783;5784;5785;5786;5787;5788	5787		6	9606
ASAQQENSSTCIGSAIK	1	0	Unmodified	1750.8156	0.81557663	2258	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	12	0												2					12.948	12.948	2	4.4488E-26	6085	DP690-12	211.77	140.55			NaN	NaN	NaN	0	0	Median	31164000	16858000	14306000	1247	2258	1179	2386;2387	5789;5790;5791;5792	5791		4	9606
ASASDGSSFVVAR	0	1	Unmodified	1252.6048	0.60477922	2118	Q9H4G4	GLIPR2	Golgi-associated plant pathogenesis-related protein 1	yes	yes	0	0	0	16	0																1	13.749	13.749	2	4.2784E-05	6952	DP690-16	131.09	98.337			0.7685	0.8835	NaN	1	0	Median	30368000	20420000	9948500	1248	2118	1180	2388	5793;5794	5794		2	9606
ASASGSGAQVGGPISSGSSASSVTVTR	0	1	Unmodified	2364.1517	0.15170921	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.5	0.5											1	1					14.141	14.141	2	3.2575000000000004E-62	8124	DP690-11	326.94	254.21			0.77541	0.90137	3.9884	2	0	Median	265960000	156540000	109420000	1249	359	1181	2389;2390	5795;5796;5797;5798;5799;5800;5801;5802	5797		8	9606
ASASTQPAALSAEQAK	1	0	Acetyl (Protein N-term)	1571.7791	0.77911477	1947	Q99622	C12orf57	Protein C10	yes	yes	1	0	0	16	0																3	14.756	14.756	2	0.0011215	8246	DP690-16	116.71	79.369			NaN	NaN	NaN	0	0	Median	3365800	3365800	0	1250	1947	1182	2391;2392;2393	5803;5804;5805;5806	5803		4	9606
ASAVSPANLPAVLLQPR	0	1	Acetyl (Protein N-term)	1744.9836	0.98356866	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	1	0	0	11.8	2.23										2	1	1				1	23.838	23.838	2	5.2063E-18	21529	DP690-11	226.42	226.42			0.64752	0.79115	18.439	4	0	Median	52882000	32011000	20870000	1251	837	1183	2394;2395;2396;2397;2398	5807;5808;5809;5810;5811;5812;5813;5814;5815;5816;5817;5818;5819;5820;5821;5822;5823;5824	5817		18	9606
ASAVTAMGQLSSQGLHAPTSPEHAEAR	0	1	Oxidation (M)	2719.2984	0.29839023	1500	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	1	0	3	0			1														13.278	13.278	4	4.0167E-05	6359	DP690-3	82.639	82.639			0.75308	0.8648	NaN	1	0	Median	16299000	9308600	6990700	1252	1500	1184	2399	5825;5826;5827;5828	5827	2186	4	9606
ASEELQKDLEEVK	2	0	Acetyl (Protein N-term)	1558.7726	0.77263241	2159	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	1	0	1	11	4							1								1		18.977	18.977	2	4.1643E-18	13281	DP690-7	303.33	248.35			0.93194	1.0309	7.0511	2	0	Median	51783000	26650000	25133000	1253	2159	1185	2400;2401	5829;5830;5831;5832;5833;5834;5835;5836;5837	5836		9	9606
ASEGPAFFPGR	0	1	Unmodified	1134.5458	0.54580778	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	10	4.06				1					1			1			1		15.931	15.931	2	9.52E-05	10239	DP690-12	131.06	68.515			0.76405	0.83381	14.359	4	0	Median	1370000000	757060000	612970000	1254	2210	1186	2402;2403;2404;2405	5838;5839;5840;5841;5842;5843;5844;5845;5846;5847;5848;5849;5850;5851;5852	5838		15	9606
ASEKPLAAVTCTAPVNIAVIK	2	0	Acetyl (Protein N-term)	2194.2031	0.20313984	875	P53602	MVD	Diphosphomevalonate decarboxylase	yes	yes	1	0	1	6	0						1											19.567	19.567	2	6.8512E-05	13561	DP690-6	107.63	90.972			0.60916	0.62973	NaN	1	0	Median	2516000	1415000	1100900	1255	875	1187	2406	5853;5854	5853		2	9606
ASELPVSEVASILQADLQNGLNK	1	0	Unmodified	2395.2595	0.25946875	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	11	0											2						25.2	25.2	2	6.7167E-24	23034	DP690-11	205.28	205.28			0.73439	0.88128	NaN	1	0	Median	5771100	3521600	2249500	1256	1068	1188	2407;2408	5855;5856;5857;5858	5857		4	9606
ASEMAGPPQMPNDFLSFQDIATEAAHPIR	0	1	2 Oxidation (M)	3172.4594	0.4593839	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	2	0	10	0										1							20.475	20.475	3	0.00015308	17407	DP690-10	65.887	54.371			0.73832	0.92372	NaN	1	0	Median	36156000	18001000	18155000	1257	1492	1189	2409	5859;5860	5859	2179;2180	2	9606
ASEVEEILDGNDEKYK	2	0	Unmodified	1837.8582	0.85815295	1161	Q12824	SMARCB1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	yes	yes	0	0	1	13	0													1				16.977	16.977	3	3.4809E-05	11520	DP690-13	123.1	98.538			0.42462	0.4778	NaN	1	0	Median	50770000	34562000	16208000	1258	1161	1190	2410	5861;5862	5862		2	9606
ASEVMGPVEAAPEYR	0	1	Unmodified	1604.7505	0.75045718	1756	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	12	0												2					15.659	15.659	2	0.020315	9918	DP690-12	106.01	72.968			NaN	NaN	NaN	0	0	Median	0	0	0	1259	1756	1191	2411;2412	5863;5864	5863		2	9606
ASEVQEFTAEFLEK	1	0	Unmodified	1626.7777	0.77771779	1691	Q8NEM2	SHCBP1	SHC SH2 domain-binding protein 1	yes	yes	0	0	0	11	0											1						21.426	21.426	2	0.017953	18531	DP690-11	97.779	50.518			NaN	NaN	NaN	0	0	Median	7486400	7486400	0	1260	1691	1192	2413	5865	5865		1	9606
ASFENNCEIGCFAK	1	0	Unmodified	1645.6865	0.68647672	907	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	15	0															1		16.191	16.191	2	2.1922E-05	10324	DP690-15	149.49	117.65			1.0383	1.2237	NaN	1	0	Median	30976000	14848000	16128000	1261	907	1193	2414	5866;5867;5868;5869	5868		4	9606
ASFETLPNISDLCLR	0	1	Unmodified	1734.8611	0.86107026	2080	Q9H019	MTFR1L	Mitochondrial fission regulator 1-like	yes	yes	0	0	0	14	0														1			21.254	21.254	2	1.6243E-05	17214	DP690-14	136.53	136.53			0.80988	0.9828	NaN	1	0	Median	21075000	10426000	10649000	1262	2080	1194	2415	5870;5871	5871		2	9606
ASFITPVPGGVGPMTVAMLMQSTVESAK	1	0	2 Oxidation (M)	2837.4013	0.40132366	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	2	0	11	0											2						23.979	23.979	2	0.00011569	21693	DP690-11	100.02	81.551			0.99124	1.2014	NaN	1	0	Median	9564400	2910300	6654100	1263	470	1195	2416;2417	5872;5873;5874;5875;5876	5872	561;562;563	5	9606
ASFITPVPGGVGPMTVAMLMQSTVESAK	1	0	Oxidation (M)	2821.4064	0.40640904	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	1	0	11	0											2						25.297	25.297	2	0.00019482	22673	DP690-11	91.926	91.926			0.93694	1.095	NaN	1	0	Median	4780100	2546900	2233200	1264	470	1195	2418;2419	5877;5878	5877	561;562;563	2	9606
ASFITPVPGGVGPMTVAMLMQSTVESAK	1	0	Unmodified	2805.4115	0.41149441	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	11	0											1						25.624	25.624	2	1.9144E-05	23473	DP690-11	114.99	114.99			0.66337	0.8104	NaN	1	0	Median	6860900	3701300	3159600	1265	470	1195	2420	5879;5880;5881;5882;5883;5884;5885	5882		7	9606
ASFITPVPGGVGPMTVAMLMQSTVESAK	1	0	3 Oxidation (M)	2853.3962	0.39623828	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	3	0	3	0			1														20.675	20.675	2	3.3683E-10	15869	DP690-3	124.98	100.27			NaN	NaN	NaN	0	0	Median	2370600	2370600	0	1266	470	1195	2421	5886;5887;5888	5886	561;562;563	3	9606
ASFITPVPGGVGPMTVAMLMQSTVESAKR	1	1	Unmodified	2961.5126	0.51260544	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	11	0											1						23.888	23.888	3	2.9631E-08	21614	DP690-11	129.04	108.84			0.76852	0.90749	NaN	1	0	Median	10799000	5387500	5411900	1267	470	1196	2422	5889;5890	5889		2	9606
ASFLQSQFPDDAEVYR	0	1	Unmodified	1871.869	0.86899241	2528	Q9Y6X8	ZHX2	Zinc fingers and homeoboxes protein 2	yes	yes	0	0	0	11	0											1						19.223	19.223	2	0.026809	15428	DP690-11	89.44	45.836			NaN	NaN	NaN	0	0	Median	15457000	15457000	0	1268	2528	1197	2423	5891	5891		1	9606
ASFTTFTVTK	1	0	Unmodified	1101.5706	0.57062555	1103	Q03135	CAV1	Caveolin-1	yes	yes	0	0	0	16	0																1	16.078	16.078	2	0.011528	9968	DP690-16	81.525	40.747			0.79203	0.92582	NaN	1	0	Median	22786000	13101000	9684800	1269	1103	1198	2424	5892	5892		1	9606
ASFVTEVLAHSGR	0	1	Acetyl (Protein N-term)	1414.7205	0.72047768	171	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	1	0	0	7	4			1								1						22.464	22.464	2	1.5929E-07	17999	DP690-3	166.69	128.39			NaN	NaN	NaN	0	0	Median	12246000	4918200	7328300	1270	171	1199	2425;2426	5893;5894;5895	5895		3	9606
ASGADSKGDDLSTAILK	2	0	Acetyl (Protein N-term)	1689.8421	0.84210896	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	1	0	1	3	0			1														17.041	17.041	2	3.0158E-13	11286	DP690-3	203.74	162.63			1.074	1.1583	NaN	1	0	Median	26958000	12864000	14094000	1271	893	1200	2427	5896;5897;5898	5896		3	9606
ASGDSARPVLLQVAESAYR	0	2	Unmodified	1989.028	0.02795267	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	1	12	0												1					18.486	18.486	3	3.2586E-05	13784	DP690-12	120.74	76.163			0.71866	0.81485	NaN	1	0	Median	218840000	125800000	93038000	1272	2359	1201	2428	5899;5900;5901	5900		3	9606
ASGLVPNVVVLVATVR	0	1	Unmodified	1592.9614	0.96137665	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	7.67	3.4			1						1		1						22.64	22.64	2	4.9847E-06	20140	DP690-11	134.18	128.15			1.0301	1.2398	25.1	3	0	Plateau	28199000	16714000	11485000	1273	1504	1202	2429;2430;2431	5902;5903;5904;5905;5906;5907;5908;5909	5904		8	9606
ASGNYATVISHNPETK	1	0	Unmodified	1687.8166	0.81656291	1007	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	12.3	3.77							1								2		12.64	12.64	2;3	2.9884E-22	5616	DP690-15	243.37	184.67			0.8515	1.0044	11.538	3	0	Median	237910000	122740000	115170000	1274	1007	1203	2432;2433;2434	5910;5911;5912;5913;5914;5915;5916;5917;5918;5919;5920;5921;5922;5923;5924	5915		15	9606
ASGNYATVISHNPETKK	2	0	Unmodified	1815.9115	0.91152593	1007	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	15	0															1		11.171	11.171	3	0.00015722	3754	DP690-15	102.72	86.833			0.91741	1.0504	NaN	1	0	Median	38725000	17707000	21018000	1275	1007	1204	2435	5925;5926;5927;5928	5925		4	9606
ASGPGLNASGIPASLPVEFTIDAR	0	1	Unmodified	2339.2121	0.21212463	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	5	3.69		3							1	1							21.622	21.622	2	1.7689E-15	15346	DP690-2	171.26	121.82			NaN	NaN	NaN	0	0	Median	13817000	13817000	0	1276	1270	1205	2436;2437;2438;2439;2440	5929;5930;5931;5932;5933;5934;5935;5936	5931		8	9606
ASGPGLNTTGVPASLPVEFTIDAK	1	0	Unmodified	2341.2165	0.2165413	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9	3.27		1							1	2	1	1					20.97	20.97	2	2.2056E-53	17847	DP690-10	252.37	230.46			0.67678	0.78679	30.979	4	0	Median	856120000	519370000	336750000	1277	549	1206	2441;2442;2443;2444;2445;2446	5937;5938;5939;5940;5941;5942;5943;5944;5945;5946;5947;5948;5949;5950;5951;5952;5953;5954	5938		18	9606
ASGPPVSELITK	1	0	Unmodified	1197.6605	0.66050319	504;456	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	0	14	0														1			15.68	15.68	2	0.034761	9622	DP690-14	65.842	28.334			0.87276	0.97823	NaN	1	0	Median	429020000	234040000	194980000	1278	456;504	1207	2447	5955	5955		1	9606
ASGQPAGPDNKENCPVPGKPGEAVAAR	2	1	Unmodified	2673.2929	0.29291092	367	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	0	2	11	4							2								2		11.015	11.015	3;4	2.5745E-08	3552	DP690-15	122.59	94.133			0.54497	0.62284	NaN	1	0	Median	122550000	102270000	20282000	1279	367	1208	2448;2449;2450;2451	5956;5957;5958;5959;5960;5961;5962;5963;5964;5965;5966;5967;5968	5962		13	9606
ASGVAVSDGVIK	1	0	Acetyl (Protein N-term)	1143.6136	0.61355299	572	P23528	CFL1	Cofilin-1	yes	yes	1	0	0	11.8	3.85								3							1	2	17.114	17.114	2	0.00019819	10438	DP690-8	123.96	92.196			0.88452	0.94737	4.5129	3	0	Plateau	229920000	108690000	121230000	1280	572	1209	2452;2453;2454;2455;2456;2457	5969;5970;5971;5972;5973;5974;5975;5976;5977	5975		9	9606
ASGVQVADEVCR	0	1	Acetyl (Protein N-term)	1331.614	0.6139637	932	P60981	DSTN	Destrin	yes	yes	1	0	0	16	0																1	16.693	16.693	2	0.00010045	10754	DP690-16	131.82	86.682			0.89418	1.04	NaN	1	0	Median	16292000	8622800	7669300	1281	932	1210	2458	5978;5979	5979		2	9606
ASHTAPQVLFSHR	0	1	Unmodified	1449.7477	0.74769548	139	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	10	4						1								1			11.746	11.746	3	2.9707E-11	4380	DP690-14	215.02	189.3			0.98952	1.1579	24.04	2	0	Median	87630000	48122000	39508000	1282	139	1211	2459;2460	5980;5981;5982;5983;5984	5982		5	9606
ASIHEAWTDGK	1	0	Unmodified	1213.5728	0.57275081	476;186	P12814;O43707	ACTN1;ACTN4	Alpha-actinin-1;Alpha-actinin-4	no	no	0	0	0	11	0											1						12.188	12.188	3	0.022272	5332	DP690-11	57.885	29.088			0.8096	0.96783	NaN	1	0	Median	100620000	56397000	44227000	1283	476;186	1212	2461	5985;5986;5987	5986		3	9606
ASIPFSVVGSNQLIEAK	1	0	Unmodified	1758.9516	0.95159983	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	14	0														1			19.617	19.617	2	2.8359E-07	15129	DP690-14	146.79	88.006			0.74512	0.88885	NaN	1	0	Median	129500000	71282000	58214000	1284	1310	1213	2462	5988;5989;5990;5991	5989		4	9606
ASITACVGNSR	0	1	Acetyl (Protein N-term)	1176.5557	0.55572054	445	P0CG32	ZCCHC18	Putative zinc finger CCHC domain-containing protein 18	yes	yes	1	0	0	12	0												1					16.835	16.835	2	0.0035912	11554	DP690-12	94.114	35.197			0.83926	0.94524	NaN	1	0	Median	207070000	112030000	95039000	1285	445	1214	2463	5992;5993	5993		2	9606
ASITALEAK	1	0	Unmodified	902.5073	0.50729701	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1															13.416	13.416	2	0.0066504	5831	DP690-2	93.143	2.7734			1.1598	1.1793	NaN	1	0	Median	57921000	26694000	31227000	1286	668	1215	2464	5994;5995	5995		2	9606
ASITPGTILIILTGR	0	1	Unmodified	1524.9239	0.92392852	1098	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	7.5	6.5	2													2			24.752	24.752	2	9.7772E-06	21246	DP690-14	173.04	173.04			0.8735	1.0651	1.031	2	0	Median	63461000	33258000	30203000	1287	1098	1216	2465;2466;2467;2468	5996;5997;5998;5999;6000;6001;6002;6003;6004	6003		9	9606
ASKPLPPAPAPDEYLVSPITGEK	2	0	Unmodified	2376.2577	0.25767783	1334	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	11	0											1						17.581	17.581	3	0.052939	13101	DP690-11	47.281	32.04			NaN	NaN	NaN	0	0	Median	0	0	0	1288	1334	1217	2469	6005	6005		1	9606
ASLEAAIADAEQR	0	1	Unmodified	1343.6681	0.66810776	38	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	12	0												1					17.918	17.918	2	6.2825E-05	13056	DP690-12	175.15	135.53		+	0.62185	0.73831	NaN	1	0	Median	54386000	34181000	20205000	1289	38	1218	2470	6006;6007	6007		2	9606
ASLEAAIADAEQRGELAIK	1	1	Unmodified	1955.0324	0.032369346	38	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	13	0													1				20.189	20.189	3	0.0021444	15671	DP690-13	72.489	53.91		+	0.85302	1.056	NaN	1	0	Median	20457000	10552000	9904500	1290	38	1219	2471	6008	6008		1	9606
ASLEGNLAETENR	0	1	Unmodified	1402.6688	0.66883604	45	CON__Q04695;Q04695	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	13	0													1				14.04	14.04	2	6.231E-05	7337	DP690-13	144.7	109.52		+	0.88268	1.0139	NaN	1	0	Median	207870000	106890000	100980000	1291	45	1220	2472	6009;6010	6009		2	9606
ASLENSLEETK	1	0	Unmodified	1219.5932	0.59321148	40;29;50	CON__P02533;P02533;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8	KRT14;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16	no	no	0	0	0	12	4								1								1	14.141	14.141	2	1.1933E-23	7513	DP690-16	212.03	131.58		+	NaN	NaN	NaN	0	0	Median	35354000	35354000	0	1292	29;40;50	1221	2473;2474	6011;6012;6013	6012		3	9606
ASLENSLEETKGR	1	1	Unmodified	1432.7158	0.71578623	40;29;50	CON__P02533;P02533;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8	KRT14;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16	no	no	0	0	1	1	0	1																12.778	12.778	3	0.002484	4576	DP690-1	121.21	43.611		+	NaN	NaN	NaN	0	0	Median	2986600	2986600	0	1293	29;40;50	1222	2475	6014	6014		1	9606
ASLEQLLQVLHSTTPHYIR	0	1	Unmodified	2205.1906	0.19060132	1866	Q96H55	MYO19	Unconventional myosin-XIX	yes	yes	0	0	0	11	0											1						20.847	20.847	4	2.8815E-05	17728	DP690-11	118.5	118.5			0.74808	0.89936	NaN	1	0	Median	70472000	40144000	30328000	1294	1866	1223	2476	6015;6016;6017	6015		3	9606
ASLGSLEGEAEAEASSPK	1	0	Unmodified	1731.8163	0.81628814	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							17.485	17.485	2	1.0637E-16	13104	DP690-10	201.08	168.83			0.76628	0.95789	25.283	2	0	Median	60526000	36990000	23535000	1295	1145	1224	2477;2478	6018;6019;6020;6021;6022	6018		5	9606
ASLLDDYQLPEILR	0	1	Unmodified	1644.8723	0.87228688	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	8.67	4.03			1								1	1					22.53	22.53	2	9.7087E-09	19972	DP690-11	198.97	125.13			0.83887	0.97251	23.905	2	0	Median	6601300	3490400	3110900	1296	2105	1225	2479;2480;2481	6023;6024;6025;6026;6027;6028	6023		6	9606
ASLLDPVPEVR	0	1	Unmodified	1194.6608	0.66083754	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	6	4		1								1							17.89	17.89	2	0.003996	13684	DP690-10	102.52	78.494			0.96919	1.091	28.175	2	0	Median	107240000	62149000	45093000	1297	1782	1226	2482;2483	6029;6030;6031;6032;6033	6030		5	9606
ASLLDQALPNDVLFSSTYPSLPK	1	0	Unmodified	2475.2897	0.28970624	164	O43166	SIPA1L1	Signal-induced proliferation-associated 1-like protein 1	yes	yes	0	0	0	10	0										2							23.043	23.043	2	2.6004E-06	20868	DP690-10	136.63	136.63			0.833	1.0097	NaN	1	0	Median	7148400	3915900	3232500	1298	164	1227	2484;2485	6034;6035	6034		2	9606
ASLLTDEEDVDMALDQR	0	1	Unmodified	1919.8782	0.87823647	867	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	7	0							1										10.262	10.262	3	0.0040463	2627	DP690-7	83.823	50.157			NaN	NaN	NaN	0	0	Median	10822000	10822000	0	1299	867	1228	2486	6036;6037	6037		2	9606
ASLNGADIYSGCCTLK	1	0	Unmodified	1728.7811	0.78110538	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	12	0												1					16.076	16.076	2	5.0524E-07	10531	DP690-12	158.86	118.24			0.85421	0.93438	NaN	1	0	Median	271130000	141950000	129180000	1300	494	1229	2487	6038;6039;6040;6041;6042	6041		5	9606
ASLNHSTAFNPQPQSQMQDTR	0	1	Oxidation (M)	2373.0768	0.076770131	1082	Q01196	RUNX1	Runt-related transcription factor 1	yes	yes	0	1	0	13	0													1				12.216	12.216	3	0.00020413	4897	DP690-13	100.95	87.627			0.87889	1.0814	NaN	1	0	Median	16744000	8397700	8346700	1301	1082	1230	2488	6043;6044;6045;6046	6043	1704	4	9606
ASLNPSDTPPSVVNEDFLHDLK	1	0	Unmodified	2394.1703	0.17031939	61	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	12	0												1					19.238	19.238	3	0.00049901	14851	DP690-12	81.574	66.568			0.61475	0.73898	NaN	1	0	Median	20955000	13457000	7498300	1302	61	1231	2489	6047;6048	6047		2	9606
ASLPTGEGSISHEEQK	1	0	Unmodified	1668.7955	0.79549312	1986	Q9BRQ6	CHCHD6	MICOS complex subunit MIC25	yes	yes	0	0	0	15	0															2		11.966	11.966	3	9.1368E-05	4720	DP690-15	113.43	92.339			0.76457	0.9025	NaN	1	0	Median	25674000	17729000	7944700	1303	1986	1232	2490;2491	6049;6050;6051	6050		3	9606
ASLSLAPVNIFK	1	0	Acetyl (Protein N-term)	1300.7391	0.73908786	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	0	8	4				1								1					24.192	24.192	2	0.00018604	19012	DP690-4	124.23	103.36			1.0862	1.236	40.733	2	0	Median	5983700	2948600	3035100	1304	1044	1233	2492;2493	6052;6053;6054;6055;6056;6057;6058;6059;6060;6061;6062;6063	6061		12	9606
ASMGTLAFDEYGRPFLIIK	1	1	Acetyl (Protein N-term);Oxidation (M)	2186.1082	0.10817683	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	1	1	8	4				1								1					22.42	22.42	2	1.3205E-09	18835	DP690-12	148.96	113.88			1.226	1.4745	NaN	1	0	Median	3267300	1492500	1774800	1305	779	1234	2494;2495	6064;6065	6064	1155	2	9606
ASMQQQQQLASAR	0	1	Unmodified	1445.7045	0.70451004	2479	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	0	0	15	0															1		11.232	11.232	2	3.6284E-05	3865	DP690-15	126.71	96.9			0.83482	0.96819	NaN	1	0	Median	5364900	2846800	2518100	1306	2479	1235	2496	6066;6067;6068	6068		3	9606
ASNGDAWVEAHGK	1	0	Unmodified	1340.6109	0.61092723	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	11	0											1						11.246	11.246	3	0.017144	3931	DP690-11	58.32	43.811			0.67748	0.81919	NaN	1	0	Median	59069000	36891000	22178000	1307	695	1236	2497	6069;6070;6071	6071		3	9606
ASNLENSTYDLYTIPK	1	0	Unmodified	1827.8891	0.88905915	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														18.254	18.254	2	0.00034806	12945	DP690-3	126.09	81.472			1.5452	1.6464	NaN	1	0	Median	27045000	11141000	15904000	1308	878	1237	2498	6072;6073;6074;6075	6073		4	9606
ASNLLYGQLK	1	0	Unmodified	1105.6132	0.61315906	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	7	4			1								1						15.904	15.904	2	0.0020732	10736	DP690-11	101.72	69.879			1.2527	1.3722	25.042	2	0	Median	246410000	121500000	124910000	1309	1613	1238	2499;2500	6076;6077;6078;6079	6076		4	9606
ASNTAEVFFDGVR	0	1	Unmodified	1411.6732	0.67319314	800	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				3													18.16	18.16	2	0.00016118	12537	DP690-4	120.86	93.031			0.97653	1.1373	NaN	1	0	Median	10729000	4596100	6132800	1310	800	1239	2501;2502;2503	6080;6081;6082;6083	6080		4	9606
ASNVTNKTDPR	1	1	Acetyl (Protein N-term)	1243.6157	0.61567826	410	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	1	0	1	14	0														1			10.642	10.642	2	0.0022608	2951	DP690-14	79.986	61.379			0.71557	0.89016	NaN	1	0	Median	9945200	6115300	3829900	1311	410	1240	2504	6084	6084		1	9606
ASPAAAEEVVPEWASCLK	1	0	Unmodified	1913.9193	0.91931342	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	11	0											1						19.739	19.739	2	1.6445E-05	16224	DP690-11	153	111.89			NaN	NaN	NaN	0	0	Median	28462000	28462000	0	1312	1653	1241	2505	6085	6085		1	9606
ASPAGTAGGPGAGAAAGGTGPLAAR	0	1	Unmodified	1962.9872	0.98715049	1174	Q12962	TAF10	Transcription initiation factor TFIID subunit 10	yes	yes	0	0	0	15	0															1		13.593	13.593	2	2.2522000000000002E-56	6775	DP690-15	270.78	230.06			0.63915	0.7195	NaN	1	0	Median	61681000	37204000	24477000	1313	1174	1242	2506	6086;6087;6088;6089;6090	6087		5	9606
ASPATQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVK	1	0	Unmodified	3725.988	0.98799192	1133	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	12	0												1					20.256	20.256	3	0.037253	16198	DP690-12	43.017	28.2			NaN	NaN	NaN	0	0	Median	13434000	13434000	0	1314	1133	1243	2507	6091;6092	6091		2	9606
ASPESQEPLIQLVQAFVR	0	1	Unmodified	2011.0738	0.07384023	1427	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	9.67	0.471									1	2							25.787	25.787	2	1.9445E-09	23977	DP690-10	146.5	122.25			0.7393	0.91355	0.49103	2	0	Median	21016000	11526000	9490200	1315	1427	1244	2508;2509;2510	6093;6094;6095;6096;6097;6098	6096		6	9606
ASPQSEFMPSK	1	0	Oxidation (M)	1223.5492	0.54923818	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	1	0	10	0										1							12.164	12.164	2	0.0093633	5321	DP690-10	104.42	65.648			NaN	NaN	NaN	0	0	Median	65269000	65269000	0	1316	2190	1245	2511	6099;6100	6099	2668	2	9606
ASPQSEFMPSK	1	0	Unmodified	1207.5543	0.55432356	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10	0										1							14.076	14.076	2	0.026748	8201	DP690-10	94.409	37.975			NaN	NaN	NaN	0	0	Median	51694000	51694000	0	1317	2190	1245	2512	6101;6102	6102		2	9606
ASPSPQPSSQPLQIHR	0	1	Unmodified	1728.8907	0.89073091	2165	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	11	0											1						12.458	12.458	3	0.0044381	5610	DP690-11	96.247	59.472			NaN	NaN	NaN	0	0	Median	69431000	69431000	0	1318	2165	1246	2513	6103;6104	6103		2	9606
ASQLGIFISK	1	0	Unmodified	1062.6073	0.6073454	1414	Q5EBL8	PDZD11	PDZ domain-containing protein 11	yes	yes	0	0	0	16	0																1	17.392	17.392	2	0.012983	11558	DP690-16	79.489	68.268			0.82706	0.93551	NaN	1	0	Median	49384000	26898000	22486000	1319	1414	1247	2514	6105;6106	6105		2	9606
ASQNRDPAATSVAAAR	0	2	Acetyl (Protein N-term)	1626.8074	0.80739521	100	O00762	UBE2C	Ubiquitin-conjugating enzyme E2 C	yes	yes	1	0	1	8	0								1									12.17	12.17	2	6.4267E-06	4892	DP690-8	126.32	85.036			0.66472	0.7023	NaN	1	0	Median	3111400	1767700	1343700	1320	100	1248	2515	6107;6108	6107		2	9606
ASQSQGIQQLLQAEKR	1	1	Acetyl (Protein N-term)	1825.9646	0.96462413	247	O75348;O95670	ATP6V1G1;ATP6V1G2	V-type proton ATPase subunit G 1;V-type proton ATPase subunit G 2	yes	no	1	0	1	16	0																1	18.276	18.276	2	3.2559E-13	12674	DP690-16	209.25	187.85			0.65219	0.7648	NaN	1	0	Median	3579200	1847900	1731300	1321	247	1249	2516	6109;6110;6111;6112	6110		4	9606
ASREEILAQAK	1	1	Unmodified	1214.6619	0.66190017	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	4	3.46		3								1							11.098	11.098	2;3	0.00072721	3234	DP690-2	123.51	68.532			0.96662	1.0719	2.5654	2	0	Median	117500000	55650000	61854000	1322	668	1250	2517;2518;2519;2520	6113;6114;6115;6116;6117;6118;6119;6120;6121	6117		9	9606
ASSAASSEHFEK	1	0	Acetyl (Protein N-term)	1291.5681	0.56805936	2331	Q9UEU0	VTI1B	Vesicle transport through interaction with t-SNAREs homolog 1B	yes	yes	1	0	0	15	0															1		11.952	11.952	2	0.00059465	4664	DP690-15	133.91	80.155			NaN	NaN	NaN	0	0	Median	3515100	0	3515100	1323	2331	1251	2521	6122;6123	6122		2	9606
ASSAQSGGSSGGPAVPTVQR	0	1	Acetyl (Protein N-term)	1841.8868	0.88676774	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	1	0	0	11	0											1						14.741	14.741	2	3.049E-16	9009	DP690-11	204.18	140.32			NaN	NaN	NaN	0	0	Median	0	0	0	1324	1524	1252	2522	6124	6124		1	9606
ASSDLEQLCSHVNEK	1	0	Acetyl (Protein N-term)	1757.789	0.78902753	1824	Q96BD8	SKA1	Spindle and kinetochore-associated protein 1	yes	yes	1	0	0	15	0															1		17.045	17.045	2	5.7739E-15	11483	DP690-15	228.61	169.54			1.0208	1.2035	NaN	1	0	Median	14360000	7433900	6926000	1325	1824	1253	2523	6125;6126;6127;6128	6127		4	9606
ASSEQAEQPSQPSSTPGSENVLPR	0	1	Acetyl (Protein N-term)	2524.1678	0.16775321	251	O75381	PEX14	Peroxisomal membrane protein PEX14	yes	yes	1	0	0	13	0													1				16.402	16.402	2	2.8588E-12	10695	DP690-13	199.61	172.96			NaN	NaN	NaN	0	0	Median	0	0	0	1326	251	1254	2524	6129	6129		1	9606
ASSESSYPTAESQAEAER	0	1	Unmodified	1898.813	0.81299368	1403	Q53GS7	GLE1	Nucleoporin GLE1	yes	yes	0	0	0	11	0											1						12.693	12.693	2	4.1895E-06	6042	DP690-11	129.77	107.73			0.72344	0.88843	NaN	1	0	Median	14913000	8343600	6569300	1327	1403	1255	2525	6130;6131;6132	6131		3	9606
ASSFAGYVGMLTGFK	1	0	Unmodified	1534.749	0.74900062	1218	Q13510	ASAH1	Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta	yes	yes	0	0	0	7	0							1										13.197	13.197	3	0.0016567	6106	DP690-7	77.633	11.61			0.070901	0.073505	NaN	1	0	Median	765390000	719210000	46177000	1328	1218	1256	2526	6133	6133		1	9606
ASSSAGNLGVLIPVIAVLTR	0	1	Unmodified	1937.131	0.13096118	728	P42356	PI4KA	Phosphatidylinositol 4-kinase alpha	yes	yes	0	0	0	10	0										1							25.526	25.526	2	0.0010206	23677	DP690-10	89.506	89.506			0.73749	0.89996	NaN	1	0	Median	4577100	2785500	1791600	1329	728	1257	2527	6134;6135;6136;6137	6135		4	9606
ASSSAGTDPQLLLYR	0	1	Unmodified	1577.8049	0.80493559	1505	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	11	0											1						17.307	17.307	2	0.016476	12736	DP690-11	97.911	71.793			NaN	NaN	NaN	0	0	Median	9680600	0	9680600	1330	1505	1258	2528	6138	6138		1	9606
ASSSLGLQDFDLLR	0	1	Unmodified	1520.7835	0.78347187	722	P41743	PRKCI	Protein kinase C iota type	yes	yes	0	0	0	4	0				1													21.256	21.256	2	8.2238E-05	16116	DP690-4	155.48	86.135			0.9151	1.0569	NaN	1	0	Median	2959400	1337800	1621600	1331	722	1259	2529	6139;6140;6141;6142;6143	6142		5	9606
ASSVGNVADSTEPTKR	1	1	Acetyl (Protein N-term)	1659.8064	0.80639216	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	1	0	1	7	4			1								1						13.469	13.469	2	3.4107999999999997E-23	7137	DP690-11	253.42	217.88			0.7687	0.86657	19.03	2	0	Median	150880000	85778000	65107000	1332	149	1260	2530;2531	6144;6145;6146;6147;6148;6149;6150;6151	6144		8	9606
ASSVIFGLK	1	0	Unmodified	920.53312	0.53311783	2087	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	13	0													1				16.926	16.926	2	0.0046191	11416	DP690-13	101.33	64.233			0.96651	1.0995	NaN	1	0	Median	116510000	60912000	55599000	1333	2087	1261	2532	6152;6153;6154;6155	6153		4	9606
ASSVTTFTGEPNTCPR	0	1	Unmodified	1723.7835	0.78354822	866	P52943	CRIP2	Cysteine-rich protein 2	yes	yes	0	0	0	15	0															1		14.109	14.109	2	4.4156E-07	7588	DP690-15	162.68	120.47			0.70103	0.81003	NaN	1	0	Median	11533000	6035600	5497000	1334	866	1262	2533	6156;6157;6158;6159	6158		4	9606
ASTDVAGQAVTINLVPTEEQAKPYR	1	1	Unmodified	2657.3661	0.36605909	2131	Q9H792	PEAK1	Pseudopodium-enriched atypical kinase 1	yes	yes	0	0	1	10	0										1							17.44	17.44	3	0.056463	13055	DP690-10	47.554	14.025			NaN	NaN	NaN	0	0	Median	21277000	21277000	0	1335	2131	1263	2534	6160	6160		1	9606
ASTEATELLQNIR	0	1	Unmodified	1444.7522	0.75217174	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	10	0										1							18.112	18.112	2	0.00014026	14019	DP690-10	142.98	142.98			1.0151	1.2664	NaN	1	0	Median	69867000	36452000	33415000	1336	106	1264	2535	6161;6162	6161		2	9606
ASTEGVAIQGQQGTR	0	1	Unmodified	1501.7485	0.74848335	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										4							11.531	11.531	2	5.1728E-06	4503	DP690-10	176.32	141.52			0.65459	0.81191	NaN	1	0	Median	95871000	41371000	54500000	1337	1783	1265	2536;2537;2538;2539	6163;6164;6165;6166;6167;6168	6165		6	9606
ASTNAMLISAGLPPLK	1	0	Unmodified	1582.8753	0.87526376	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	11	0											1						19.601	19.601	2	0.0032606	16066	DP690-11	80.871	60.567			0.76816	0.9351	NaN	1	0	Median	36445000	19941000	16504000	1338	161	1266	2540	6169	6169		1	9606
ASTSDYQVISDR	0	1	Unmodified	1340.6208	0.62082322	1700	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	0	0	0	14	0														1			13.841	13.841	2	0.0082587	7406	DP690-14	77.288	55.542			0.72706	0.85216	NaN	1	0	Median	153240000	79301000	73935000	1339	1700	1267	2541	6170;6171	6170		2	9606
ASVDELFAEIVR	0	1	Unmodified	1347.7034	0.70343063	945	P61225	RAP2B	Ras-related protein Rap-2b	yes	yes	0	0	0	16	0																1	22.811	22.811	2	0.00019889	17702	DP690-16	157.75	121.32			0.69933	0.81356	NaN	1	0	Median	10552000	6174000	4377800	1340	945	1268	2542	6172;6173;6174;6175	6173		4	9606
ASVGECPAPVPVK	1	0	Acetyl (Protein N-term)	1351.6806	0.6805867	904	P56134	ATP5J2	ATP synthase subunit f, mitochondrial	yes	yes	1	0	0	16	0																1	16.074	16.074	2	0.0002598	10058	DP690-16	120.09	76.455			0.71218	0.8234	NaN	1	0	Median	29490000	16328000	13162000	1341	904	1269	2543	6176;6177;6178;6179	6179		4	9606
ASVGECPAPVPVKDK	2	0	Acetyl (Protein N-term)	1594.8025	0.80249275	904	P56134	ATP5J2	ATP synthase subunit f, mitochondrial	yes	yes	1	0	1	10.7	3.77								2								1	13.929	13.929	2	3.4899E-07	7117	DP690-16	179.59	127.42			0.60657	0.67782	NaN	1	0	Median	80217000	50204000	30014000	1342	904	1270	2544;2545;2546	6180;6181;6182;6183;6184;6185;6186	6181		7	9606
ASVGECPAPVPVKDKK	3	0	Acetyl (Protein N-term)	1722.8975	0.89745577	904	P56134	ATP5J2	ATP synthase subunit f, mitochondrial	yes	yes	1	0	2	16	0																4	12.195	12.195	2;3	0.00033742	4921	DP690-16	128.95	97.631			NaN	NaN	NaN	0	0	Median	78117000	44429000	33688000	1343	904	1271	2547;2548;2549;2550	6187;6188;6189;6190;6191;6192	6188		6	9606
ASVGMYLISK	1	0	Oxidation (M)	1083.5634	0.56343168	418	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	1	0	4	0				1													15.528	15.528	2	0.023693	9158	DP690-4	77.662	50.408			2.809	3.0747	NaN	1	0	Median	16771000	5418300	11353000	1344	418	1272	2551	6193;6194	6194	471	2	9606
ASVITQVFHVPLEER	0	1	Unmodified	1723.9257	0.92571943	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	9.5	0.5									1	1							18.858	18.858	3	5.4556E-06	15124	DP690-10	134.04	95.038			0.70741	0.8526	6.7409	2	0	Median	320260000	189700000	130550000	1345	1071	1273	2552;2553	6195;6196;6197;6198;6199	6197		5	9606
ASVLFDTMQHHLALNR	0	1	Oxidation (M)	1867.9363	0.93630089	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	1	0	9	0									1								14.704	14.704	3	0.026585	8104	DP690-9	54.234	54.234			0.79606	0.99713	NaN	1	0	Median	7896200	4361100	3535000	1346	763	1274	2554	6200;6201	6200	1134	2	9606
ASVPAAPNPAATSATSVHVR	0	1	Unmodified	1902.9912	0.99117323	1621	Q8IY33	MICALL2	MICAL-like protein 2	yes	yes	0	0	0	11	0											1						13.561	13.561	3	0.00047462	7337	DP690-11	89.557	72.472			1.1502	1.3711	NaN	1	0	Median	120980000	64391000	56591000	1347	1621	1275	2555	6202;6203	6202		2	9606
ASVSPMDEPVPDSESPIEK	1	0	Oxidation (M)	2028.9198	0.91976693	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	1	0	9	0									2								14.763	14.763	2	0.0043625	8158	DP690-9	126.09	91.391			NaN	NaN	NaN	0	0	Median	0	0	0	1348	763	1276	2556;2557	6204;6205	6204	1135	2	9606
ASVSQVEADLK	1	0	Unmodified	1145.5928	0.59281755	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	12	0												3					15.247	15.247	2	0.026936	9407	DP690-12	94.692	33.782			NaN	NaN	NaN	0	0	Median	36372000	0	36372000	1349	1131	1277	2558;2559;2560	6206;6207;6208	6207		3	9606
ASYDVSDSGQLEHVQPWSV	0	0	Unmodified	2102.9545	0.95451296	1089	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	3	0			1														19.338	19.338	2	0.014484	14299	DP690-3	93.716	66.387			NaN	NaN	NaN	0	0	Median	0	0	0	1350	1089	1278	2561	6209;6210	6210		2	9606
ASYGVEDPEYAVTQLAQTTMR	0	1	Oxidation (M)	2345.0845	0.084540851	2365	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	1	0	14	0														1			20.128	20.128	2	0.05595	15835	DP690-14	71.98	46.45			NaN	NaN	NaN	0	0	Median	11226000	11226000	0	1351	2365	1279	2562	6211	6211		1	9606
ASYGVEDPEYAVTQLAQTTMR	0	1	Unmodified	2329.0896	0.089626228	2365	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	14	0														1			21.537	21.537	2	7.3619E-11	17553	DP690-14	162.46	116.64			NaN	NaN	NaN	0	0	Median	5605600	5605600	0	1352	2365	1279	2563	6212	6212		1	9606
ASYVAPLTAQPATYR	0	1	Unmodified	1607.8308	0.83075641	1910	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	11.5	0.5											2	2					15.848	15.848	2	2.0399E-05	10215	DP690-12	140.45	117.08			0.70099	0.82589	0.085667	2	0	Median	146400000	84619000	61783000	1353	1910	1280	2564;2565;2566;2567	6213;6214;6215;6216;6217;6218;6219;6220	6219		8	9606
ASYYVVSGNDPANGEPSR	0	1	Unmodified	1881.8493	0.8493196	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	15	0															1		14.482	14.482	2	1.0212000000000001E-33	8063	DP690-15	279.65	249.62			0.71049	0.82627	NaN	1	0	Median	25513000	13913000	11601000	1354	1048	1281	2568	6221;6222;6223;6224;6225	6224		5	9606
ATAAFILANEHNVALFK	1	0	Unmodified	1828.9836	0.98356866	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			2														18.629	18.629	2;3	6.7065E-08	13391	DP690-3	161.82	161.82			1.0435	1.0886	0.65325	2	0	Median	98142000	49246000	48896000	1355	82	1282	2569;2570	6226;6227;6228;6229;6230;6231;6232	6226		7	9606
ATAAPAGAPPQPQDLEFTK	1	0	Unmodified	1908.9581	0.95814177	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13.8	0.829													2	1	1		19.902	19.902	2	3.2878E-11	10218	DP690-13	164.88	164.88			0.78114	0.86952	53.828	2	0	Median	647000000	406510000	240490000	1356	565	1283	2571;2572;2573;2574	6233;6234;6235;6236;6237;6238;6239	6235		7	9606
ATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSR	1	1	Unmodified	3818.9843	0.98430353	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	1	13	0													1				21.985	21.985	3	2.7493E-12	17843	DP690-13	106.19	95.201			0.42763	0.5271	NaN	1	0	Median	18076000	12497000	5579700	1357	565	1284	2575	6240;6241;6242;6243	6240		4	9606
ATAGDTHLGGEDFDNR	0	1	Unmodified	1674.7234	0.72339081	449;508	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	8	4				2								2					12.844	12.844	2;3	7.2755E-24	5673	DP690-4	269.44	260.49			1.1863	1.2962	32.694	4	0	Median	796970000	384850000	412120000	1358	508;449	1285	2576;2577;2578;2579	6244;6245;6246;6247;6248;6249;6250;6251;6252;6253;6254;6255;6256;6257;6258	6254		15	9606
ATAPQTQHVSPMR	0	1	Unmodified	1422.7038	0.70378176	617	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	11.3	3.77						1								2			10.35	10.35	2;3	2.4571E-05	2591	DP690-14	155.99	127.71			0.90062	1.0223	41.73	3	0	Median	311590000	161180000	150410000	1359	617	1286	2580;2581;2582	6259;6260;6261;6262;6263;6264;6265	6260		7	9606
ATAPVPTVGEGYGYGHESELSQASAAAR	0	1	Unmodified	2775.31	0.31000077	2028	Q9BWF3	RBM4	RNA-binding protein 4	yes	yes	0	0	0	14	0														1			15.802	15.802	3	8.0942E-18	10014	DP690-14	169.33	152.45			0.63684	0.76781	NaN	1	0	Median	65650000	38133000	27518000	1360	2028	1287	2583	6266;6267;6268;6269	6269		4	9606
ATATPVPPR	0	1	Acetyl (Protein N-term)	950.51853	0.5185304	544	P20700	LMNB1	Lamin-B1	yes	yes	1	0	0	12	0												1					13.642	13.642	1	0.015094	7429	DP690-12	82.241	42.137			0.61084	0.72477	NaN	1	0	Median	39147000	24860000	14287000	1361	544	1288	2584	6270	6270		0	9606
ATAVMPDGQFK	1	0	Oxidation (M)	1179.5594	0.55940893	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	1	0	10.5	3.82						1	3	3	1						4	1	12.65	12.65	2	0.00012757	4707	DP690-16	128.86	101.03			0.84319	0.81003	6.5816	11	0	Linear	10565000000	5566400000	4998300000	1362	1128	1289	2585;2586;2587;2588;2589;2590;2591;2592;2593;2594;2595;2596;2597	6271;6272;6273;6274;6275;6276;6277;6278;6279;6280;6281;6282;6283;6284;6285;6286;6287;6288;6289;6290;6291;6292;6293;6294;6295;6296;6297;6298;6299;6300;6301;6302;6303;6304;6305;6306;6307;6308;6309;6310;6311;6312;6313;6314	6284	1751	44	9606
ATAVMPDGQFK	1	0	Unmodified	1163.5645	0.56449431	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	9.75	3.11							1	1	1						1		14.214	14.214	2	6.9464E-05	7134	DP690-8	177.7	147.96			0.93054	0.96929	17.477	4	0	Median	2927799999.9999995	1483499999.9999998	1444300000	1363	1128	1289	2598;2599;2600;2601	6315;6316;6317;6318;6319;6320;6321;6322;6323;6324;6325;6326;6327;6328;6329;6330	6327		16	9606
ATAVMPDGQFKDISLSDYK	2	0	Oxidation (M)	2101.0038	0.003771334	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	1	1	15	0															2		16.691	16.691	2;3	1.6905E-16	10967	DP690-15	206.67	193.34			0.82044	0.94028	3.0474	2	0	Median	1112100000	595710000	516370000	1364	1128	1290	2602;2603	6331;6332;6333;6334;6335;6336	6336	1751	6	9606
ATAVMPDGQFKDISLSDYK	2	0	Unmodified	2085.0089	0.0088567119	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	11	4							1								1		17.693	17.693	3	9.478E-07	11730	DP690-7	135.08	120.28			0.64608	0.71489	12.155	2	0	Median	137830000	79402000	58429000	1365	1128	1290	2604;2605	6337;6338;6339;6340;6341;6342;6343	6342		7	9606
ATAVVDGAFK	1	0	Unmodified	977.5182	0.51819605	643	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	11.3	3.68							1	2							3		13.451	13.451	2	0.00013528	6458	DP690-8	138.06	90.147			0.86906	0.94185	7.4318	3	0	Median	462160000	239720000	222440000	1366	643	1291	2606;2607;2608;2609;2610;2611	6344;6345;6346;6347;6348;6349;6350;6351;6352;6353;6354;6355	6353		12	9606
ATAVVDGAFKEVK	2	0	Unmodified	1333.7242	0.72416608	643	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	1	15	0															1		13.625	13.625	2	0.00013631	6906	DP690-15	138.63	78.459			0.95579	1.0945	NaN	1	0	Median	50351000	23385000	26965000	1367	643	1292	2612	6356;6357;6358;6359	6358		4	9606
ATCAPQHGAPGPGPADASK	1	0	Unmodified	1788.8213	0.82133071	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	11.5	4.18		1	2	1					2	2	3	2	2	3	5	3	10.243	10.243	2;3	3.0974E-33	2717	DP690-10	260.07	199.99			0.59156	0.66574	23.179	15	0	Median	8504799999.999999	5276500000	3228399999.9999995	1368	549	1293	2613;2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629;2630;2631;2632;2633;2634;2635;2636;2637;2638	6360;6361;6362;6363;6364;6365;6366;6367;6368;6369;6370;6371;6372;6373;6374;6375;6376;6377;6378;6379;6380;6381;6382;6383;6384;6385;6386;6387;6388;6389;6390;6391;6392;6393;6394;6395;6396;6397;6398;6399;6400;6401;6402;6403;6404;6405;6406;6407;6408;6409;6410;6411;6412;6413;6414;6415;6416;6417;6418;6419;6420;6421;6422;6423;6424;6425;6426;6427;6428;6429	6367		70	9606
ATCFAYGQTGSGK	1	0	Unmodified	1346.5925	0.59249998	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11.5	0.5											1	1					12.74	12.74	2	8.7472E-10	6102	DP690-11	242.49	210.86			1.326	1.4589	NaN	1	0	Median	315540000	146970000	168570000	1369	1950	1294	2639;2640	6430;6431;6432;6433;6434;6435	6431		6	9606
ATCQETVEPPQTLHQQQQQQQQQQEK	1	0	Unmodified	3147.464	0.463952	1632	Q8IZD4	DCP1B	mRNA-decapping enzyme 1B	yes	yes	0	0	0	12	0												1					11.881	11.881	3	9.5203E-11	4629	DP690-12	151.01	134.71			0.60038	0.72169	NaN	1	0	Median	21347000	12681000	8666400	1370	1632	1295	2641	6436;6437	6437		2	9606
ATDLILDHIR	0	1	Unmodified	1165.6455	0.64552182	1592	Q86Y79	PTRH1	Probable peptidyl-tRNA hydrolase	yes	yes	0	0	0	15	0															2		15.895	15.895	2;3	0.00070725	10044	DP690-15	85.355	34.55			0.91563	1.0567	NaN	1	0	Median	9214800	4148800	5066000	1371	1592	1296	2642;2643	6438;6439;6440;6441	6439		4	9606
ATEGMILTNHDHQIR	0	1	Acetyl (Protein N-term);Oxidation (M)	1792.8526	0.85263084	2191	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	yes	yes	1	1	0	3	0			1														13.906	13.906	3	7.1037E-06	7216	DP690-3	136.3	114.49			0.64763	0.72241	NaN	1	0	Median	38092000	19860000	18232000	1372	2191	1297	2644	6442;6443	6443	2672	2	9606
ATEMVEVGADDDEGGAER	0	1	Oxidation (M)	1865.7585	0.75851526	1482	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	1	0	13	0													3				12.774	12.774	2	2.4869E-10	5720	DP690-13	181.98	157.47			NaN	NaN	NaN	0	0	Median	5532100	0	5532100	1373	1482	1298	2645;2646;2647	6444;6445;6446	6446	2170	3	9606
ATENDIANFFSPLNPIR	0	1	Unmodified	1917.9585	0.95847612	638	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	14	0														1			22.822	22.822	2	1.337E-10	19138	DP690-14	195.72	141.78			0.75302	0.91198	NaN	1	0	Median	41925000	26247000	15679000	1374	638	1299	2648	6447;6448;6449;6450;6451;6452;6453;6454;6455	6450		9	9606
ATENDIYNFFSPLNPMR	0	1	Oxidation (M)	2043.936	0.93602612	901	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	1	0	11	4.32					1								1		1		22.148	22.148	2	4.4237E-06	18068	DP690-13	137.62	110.49			0.73608	0.8113	0.99238	2	0	Median	164620000	95309000	69310000	1375	901	1300	2649;2650;2651	6456;6457;6458;6459;6460;6461;6462	6457	1396	7	9606
ATENDIYNFFSPLNPMR	0	1	Unmodified	2027.9411	0.9411115	901	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	0	14	0														1			23.258	23.258	2	0.075416	19652	DP690-14	98.368	66.379			NaN	NaN	NaN	0	0	Median	1968300	1968300	0	1376	901	1300	2652	6463	6463		1	9606
ATENDIYNFFSPLNPVR	0	1	Unmodified	1995.969	0.96904081	639;856	P31943;P52597	HNRNPH1;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	12	2.69					1	1	1		1	1	1		14	1	1	1	23.826	23.826	2;3	3.0202999999999998E-40	18997	DP690-13	327.3	285.06			0.72443	0.8618	11.127	14	0	Median	1046899999.9999999	596600000	450340000	1377	639;856	1301	2653;2654;2655;2656;2657;2658;2659;2660;2661;2662;2663;2664;2665;2666;2667;2668;2669;2670;2671;2672;2673;2674;2675	6464;6465;6466;6467;6468;6469;6470;6471;6472;6473;6474;6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486;6487;6488;6489;6490;6491;6492;6493;6494;6495;6496;6497;6498;6499;6500;6501;6502;6503;6504;6505;6506;6507;6508;6509;6510;6511;6512;6513;6514;6515;6516;6517;6518;6519;6520;6521;6522;6523;6524	6473		60	9606
ATENPEQVASEGLPEPVLR	0	1	Unmodified	2035.0222	0.02219859	2051	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	yes	yes	0	0	0	14	0														1			18.245	18.245	2	0.0035365	13307	DP690-14	105.58	70.622			NaN	NaN	NaN	0	0	Median	14139000	0	14139000	1378	2051	1302	2676	6525	6525		1	9606
ATESGAQSAPLPMEGVDISPK	1	0	Oxidation (M)	2100.0045	0.0044996155	1096	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	1	0	4	0				2													15.582	15.582	2	6.6162E-06	9321	DP690-4	127.57	89.977			NaN	NaN	NaN	0	0	Median	3033300	0	3033300	1379	1096	1303	2677;2678	6526;6527	6527	1716	2	9606
ATFDAISK	1	0	Unmodified	851.43888	0.43888309	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	14	0														1			12.953	12.953	2	0.067724	5968	DP690-14	107.9	66.593			0.94135	1.0808	NaN	1	0	Median	270330000	136090000	134250000	1380	502	1304	2679	6528	6528		0	9606
ATFYGEQVDYYK	1	0	Unmodified	1482.6667	0.66671078	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	6	4		1								1							16.685	16.685	2	0.0033734	9701	DP690-2	89.827	69.126			0.84329	0.93909	19.017	2	0	Median	65161000	36133000	29027000	1381	766	1305	2680;2681	6529;6530;6531;6532;6533;6534	6533		6	9606
ATFYLNVLEQK	1	0	Unmodified	1324.7027	0.70270235	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	3	0			1														19.358	19.358	2	0.0001982	14416	DP690-3	123.21	77.84			7.3086	7.8074	NaN	1	0	Median	24507000	1879800	22627000	1382	2515	1306	2682	6535	6535		1	9606
ATGANATPLDFPSKK	2	0	Acetyl (Protein N-term)	1558.7991	0.79912193	1341	Q15637	SF1	Splicing factor 1	yes	yes	1	0	1	12	0												2					15.964	15.964	2	0.0045099	10374	DP690-12	98.368	48.174			NaN	NaN	NaN	0	0	Median	28550000	28550000	0	1383	1341	1307	2683;2684	6536;6537;6538	6538		3	9606
ATGDTDQSPSPNSHR	0	1	Unmodified	1568.6815	0.68152599	2535				yes	yes	0	0	0	14	0														1			15.366	15.366	2	0.0037122	9450	DP690-14	82.494	63.87	+		0.66237	0.80257	NaN	1	0	Median	38998000	23978000	15020000	1384	2535	1308	2685	6539;6540	6540		2	9606
ATGEADVEFVTHEDAVAAMSK	1	0	Oxidation (M)	2192.9896	0.98957783	638	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	1	0	14	0														1			15.915	15.915	3	0.00017125	10108	DP690-14	103.45	69.82			0.81769	0.9872	NaN	1	0	Median	88541000	47793000	40748000	1385	638	1309	2686	6541;6542	6542	885	2	9606
ATGGGLSSVGGGSSTIK	1	0	Unmodified	1434.7314	0.7314363	368	P04259	KRT6B	Keratin, type II cytoskeletal 6B	no	no	0	0	0	16	0																1	12.973	12.973	2	0.00086862	5833	DP690-16	174.46	122.93			NaN	NaN	NaN	0	0	Median	15856000	15856000	0	1386	368	1310	2687	6543;6544	6544		2	9606
ATGILLYGLASR	0	1	Unmodified	1233.7081	0.70812208	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	7	4			1								1						19.256	19.256	2	0.00031132	14164	DP690-3	150.15	91.922			1.0817	1.2464	NaN	1	0	Median	74378000	10082000	64296000	1387	770	1311	2688;2689	6545;6546;6547;6548;6549;6550	6548		6	9606
ATGISFAIHGNFSGTK	1	0	Unmodified	1606.8104	0.81035532	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10	0										1							16.012	16.012	3	0.004534	10983	DP690-10	69.431	52.937			0.74093	0.91545	NaN	1	0	Median	77300000	47500000	29799000	1388	1329	1312	2690	6551;6552	6551		2	9606
ATGYPLAYVAAK	1	0	Unmodified	1223.655	0.65502388	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															16.475	16.475	2	0.0029501	9391	DP690-2	93.178	65.096			1.2243	1.2379	NaN	1	0	Median	21358000	9384200	11973000	1389	602	1313	2691	6553;6554;6555;6556	6554		4	9606
ATHGQTCARPMCIPPSYADLGK	1	1	Acetyl (Protein N-term);Oxidation (M)	2488.1297	0.12973368	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	1	1	1	14	0														1			14.453	14.453	3	0.00036584	8106	DP690-14	89.831	72.48			0.70523	0.81437	NaN	1	0	Median	133670000	78526000	55142000	1390	744	1314	2692	6557;6558;6559;6560;6561	6559	1095	5	9606
ATHGQTCARPMCIPPSYADLGK	1	1	Acetyl (Protein N-term)	2472.1348	0.13481906	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	1	0	1	14	0														1			15.771	15.771	3	0.04038	9954	DP690-14	77.469	60.099			NaN	NaN	NaN	0	0	Median	17095000	17095000	0	1391	744	1314	2693	6562	6562		1	9606
ATIAGGGVIPHIHK	1	0	Unmodified	1369.783	0.78301836	441	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	13.8	3.34								1							1	2	12.97	12.97	2;3	2.739E-05	5839	DP690-16	130.41	94.031			0.92097	1.0205	12.478	4	0	Median	600350000	303590000	296760000	1392	441	1315	2694;2695;2696;2697	6563;6564;6565;6566;6567;6568;6569;6570;6571;6572;6573;6574;6575;6576	6573		14	9606
ATIEDILFK	1	0	Unmodified	1048.5805	0.58046195	1239	Q6P1K8;Q13888	GTF2H2C;GTF2H2	General transcription factor IIH subunit 2-like protein;General transcription factor IIH subunit 2	yes	no	0	0	0	14	0														1			20.879	20.879	2	0.0022758	16689	DP690-14	111.95	71.946			0.82358	0.99659	NaN	1	0	Median	31296000	17089000	14206000	1393	1239	1316	2698	6577;6578;6579;6580	6577		4	9606
ATIISEQQAK	1	0	Unmodified	1087.5873	0.58733824	840	P51692;P42229	STAT5B;STAT5A	Signal transducer and activator of transcription 5B;Signal transducer and activator of transcription 5A	yes	no	0	0	0	3	0			1														11.264	11.264	2	0.023908	3798	DP690-3	72.928	36.504			0.80271	0.84298	NaN	1	0	Median	6218700	3018500	3200200	1394	840	1317	2699	6581	6581		1	9606
ATIQFHQPQR	0	1	Unmodified	1224.6364	0.63635412	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	13	0													2				11.46	11.46	2;3	4.4581E-05	3992	DP690-13	159.28	111.32			0.87974	1.0468	10.273	2	0	Median	217450000	119610000	97841000	1395	1597	1318	2700;2701	6582;6583;6584;6585;6586;6587	6586		6	9606
ATIRPVFDPSK	1	1	Unmodified	1229.6768	0.67682195	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	6	4		1								1							13.558	13.558	3	0.0060333	6077	DP690-2	74.392	15.763			0.87605	0.92133	7.844	2	0	Median	449970000	253550000	196420000	1396	1270	1319	2702;2703	6588;6589	6589		2	9606
ATISNDGATILK	1	0	Unmodified	1202.6507	0.65066678	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	8	4				1								1					14.373	14.373	2	0.00011845	7656	DP690-4	150.15	91.171			1.224	1.3642	35.858	2	0	Median	162130000	77573000	84561000	1397	1959	1320	2704;2705	6590;6591;6592;6593;6594;6595;6596;6597	6595		8	9606
ATLDVFFVPLK	1	0	Unmodified	1248.7118	0.71181048	2258	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	12	0												1					22.052	22.052	2	0.0001982	18369	DP690-12	123.21	123.21			0.82834	1.0057	NaN	1	0	Median	6121700	3330000	2791800	1398	2258	1321	2706	6598	6598		1	9606
ATLECHPLTMTDPIEEHR	0	1	Oxidation (M)	2164.9881	0.98813804	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	1	0	11.5	0.5											1	1					13.508	13.508	4	0.0019467	7239	DP690-11	71.143	52.107			0.83531	0.95872	18.359	2	0	Median	354530000	207820000	146710000	1399	1950	1322	2707;2708	6599;6600;6601;6602;6603	6600	2481	5	9606
ATLECHPLTMTDPIEEHR	0	1	Unmodified	2148.9932	0.99322342	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11	0											1						15.026	15.026	4	0.00039741	9387	DP690-11	87.157	68.152			0.94151	1.0303	NaN	1	0	Median	365320000	193920000	171400000	1400	1950	1322	2709	6604;6605	6605		2	9606
ATLHAVDVTLDPDTAHPHLFLYEDSK	1	0	Unmodified	2904.4294	0.42938762	1204	Q13410	BTN1A1	Butyrophilin subfamily 1 member A1	yes	yes	0	0	0	1	0	2																17.833	17.833	4;5	0.00025519	9325	DP690-1	98.887	79.677			NaN	NaN	NaN	0	0	Median	11539000	11539000	0	1401	1204	1323	2710;2711	6606;6607;6608;6609	6608		4	9606
ATLKDQLIYNLLK	2	0	Acetyl (Protein N-term)	1573.9079	0.9079441	352	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	1	6	0						1											22.679	22.679	2	2.2353E-07	16982	DP690-6	169.82	137.81			NaN	NaN	NaN	0	0	Median	1751300	0	1751300	1402	352	1324	2712	6610;6611	6610		2	9606
ATLNAFLYR	0	1	Unmodified	1067.5764	0.57637963	2235	Q9NVI7;Q5T2N8	ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	yes	no	0	0	0	12	0												1					17.796	17.796	2	0.017863	12945	DP690-12	104.06	45.275			NaN	NaN	NaN	0	0	Median	41426000	0	41426000	1403	2235	1325	2713	6612	6612		1	9606
ATLPDADKER	1	1	Unmodified	1114.5619	0.56185177	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	1	11	0											1						10.467	10.467	3	0.0006903	2783	DP690-11	104.05	69.661			8.424	10.531	NaN	1	0	Median	28178000	2163800	26015000	1404	476	1326	2714	6613	6613		1	9606
ATLPSPDKLPGFK	2	0	Unmodified	1369.7606	0.76055158	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	1	3	0			1														16.213	16.213	3	0.010878	10250	DP690-3	73.466	57.117			0.66167	0.71257	NaN	1	0	Median	31216000	17957000	13259000	1405	561	1327	2715	6614;6615;6616	6615		3	9606
ATLQEILPEVLK	1	0	Unmodified	1352.7915	0.79151736	1979	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	10	0										1							21.486	21.486	2	0.0017546	18875	DP690-10	97.452	56.728			0.81982	1.0078	NaN	1	0	Median	46418000	23235000	23182000	1406	1979	1328	2716	6617;6618;6619	6617		3	9606
ATLYVTAIEDR	0	1	Unmodified	1250.6507	0.65066678	1962	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	6	0						1											16.794	16.794	2	9.8176E-05	10221	DP690-6	139.38	98.155			0.82585	0.9077	NaN	1	0	Median	45209000	22370000	22839000	1407	1962	1329	2717	6620;6621;6622;6623	6620		4	9606
ATNDEIFSILK	1	0	Unmodified	1249.6554	0.65541781	1143	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	11	0											2						20.106	20.106	2	0.006621	16727	DP690-11	111.61	66.525			NaN	NaN	NaN	0	0	Median	24848000	0	24848000	1408	1143	1330	2718;2719	6624;6625;6626	6625		3	9606
ATNFLAHEK	1	0	Acetyl (Protein N-term)	1071.5349	0.53490874	617	P29692	EEF1D	Elongation factor 1-delta	yes	yes	1	0	0	12	3.65						1		1						3		1	15.412	15.412	2	0.0010834	8623	DP690-6	137.05	78.816			0.94903	1.0668	13.159	3	0	Plateau	379010000	31152000	347860000	1409	617	1331	2720;2721;2722;2723;2724;2725	6627;6628;6629;6630;6631;6632;6633;6634;6635;6636	6635		10	9606
ATNIEVLSNTFQFTNEAR	0	1	Unmodified	2054.0069	0.006882877	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	5.67	3.77			2								1						20.223	20.223	2	3.0689E-59	16894	DP690-11	338.79	338.79			1.203	1.3902	31.871	2	0	Median	55516000	29055000	26462000	1410	264	1332	2726;2727;2728	6637;6638;6639;6640;6641;6642	6637		6	9606
ATNTDLLLAYANLMLLTLSTR	0	1	Oxidation (M)	2323.2457	0.24573294	808;16;446	P49792;O14715;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD8;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	1	0	9	0									1								25.469	25.469	2	0.0027656	21046	DP690-9	81.448	81.448			0.94047	1.1075	NaN	1	0	Median	1213100	535870	677190	1411	808;16;446	1333	2729	6643;6644	6643	18	2	9606
ATPMPSRPSTTPFIDK	1	1	Oxidation (M)	1760.8767	0.87672033	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	1	10	0										1							13.312	13.312	3	0.030562	6949	DP690-10	52.008	6.678			0.57509	0.61813	NaN	1	0	Median	798800000	495110000	303690000	1412	604	1334	2730	6645;6646	6645	828	2	9606
ATPMPSRPSTTPFIDK	1	1	Unmodified	1744.8818	0.8818057	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	10	0										2							14.36	14.36	2;3	2.4259E-06	8596	DP690-10	153.49	115.8			0.56968	0.66815	4.1043	2	0	Median	683460000	437630000	245830000	1413	604	1334	2731;2732	6647;6648;6649;6650;6651;6652	6651		6	9606
ATQAHSLSYAGCNFLR	0	1	Acetyl (Protein N-term)	1836.8577	0.85771622	2441	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	1	0	0	14	0														1			17.835	17.835	2	2.1525E-12	12815	DP690-14	208.51	175.65			1.0086	1.2241	NaN	1	0	Median	20994000	10132000	10863000	1414	2441	1335	2733	6653;6654;6655;6656	6655		4	9606
ATQALVLAPTR	0	1	Unmodified	1139.6663	0.66625727	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	13	0													1				14.612	14.612	2	2.2574E-05	8124	DP690-13	188.91	152.36			0.90655	1.0171	NaN	1	0	Median	324930000	166660000	158270000	1415	927	1336	2734	6657;6658;6659;6660	6657		4	9606
ATQLLEGLVQELQK	1	0	Unmodified	1568.8774	0.87737225	840	P51692	STAT5B	Signal transducer and activator of transcription 5B	yes	yes	0	0	0	3	0			1														22.11	22.11	2	0.003544	17645	DP690-3	124.6	83.884			NaN	NaN	NaN	0	0	Median	2245900	2245900	0	1416	840	1337	2735	6661	6661		1	9606
ATQLQGDEEPSAPPTSTQAQQK	1	0	Unmodified	2311.0928	0.092797351	197	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	11	0											1						12.651	12.651	2	1.1120000000000001E-48	5909	DP690-11	294.94	255.91			0.66351	0.8121	NaN	1	0	Median	22773000	14539000	8234000	1417	197	1338	2736	6662;6663;6664;6665	6662		4	9606
ATQMPEGGQGAPPMYQLYK	1	0	2 Oxidation (M)	2097.95	0.94996162	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	9.5	0.5									1	1							14.634	14.634	2	1.8689E-09	7911	DP690-9	151.16	136.65			0.61082	0.74044	7.0311	2	0	Median	115130000	71601000	43531000	1418	1046	1339	2737;2738	6666;6667;6668;6669;6670;6671;6672;6673;6674;6675;6676	6672	1584;1585	11	9606
ATQMPEGGQGAPPMYQLYK	1	0	Oxidation (M)	2081.955	0.955047	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									3	3							16.015	16.015	2	2.5149E-11	11619	DP690-10	172.57	134.55			0.62726	0.77546	12.119	3	0	Median	121130000	84823000	36302000	1419	1046	1339	2739;2740;2741;2742;2743;2744	6677;6678;6679;6680;6681;6682;6683;6684;6685;6686;6687;6688	6678	1584;1585	12	9606
ATQMPEGGQGAPPMYQLYK	1	0	Unmodified	2065.9601	0.96013238	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.67	0.471									1	2							17.256	17.256	2	2.7164E-05	12824	DP690-10	151.99	120.85			NaN	NaN	NaN	0	0	Median	52590000	29576000	23014000	1420	1046	1339	2745;2746;2747	6689;6690;6691;6692;6693	6690		5	9606
ATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIK	1	0	Unmodified	3839.853	0.85301458	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13	0													1				24.636	24.636	3	0.016338	20994	DP690-13	52.226	33.931			NaN	NaN	NaN	0	0	Median	1203500	0	1203500	1421	565	1340	2748	6694	6694		1	9606
ATQQQHDFTLTQTADGR	0	1	Unmodified	1916.8977	0.89766678	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	8.29	2.6		1							4	2							13.017	13.017	2;3	6.765099999999999E-205	5818	DP690-9	384.73	329.95			0.86883	0.99497	11.288	4	0	Median	1693299999.9999998	892460000	800840000	1422	1046	1341	2749;2750;2751;2752;2753;2754;2755	6695;6696;6697;6698;6699;6700;6701;6702;6703;6704;6705;6706;6707;6708;6709;6710;6711;6712;6713;6714;6715;6716	6711		22	9606
ATQVEPLLPGGATLLQAEEHGGLVR	0	1	Acetyl (Protein N-term)	2597.3813	0.38131522	1501	Q6PKG0	LARP1	La-related protein 1	yes	yes	1	0	0	10	0										1							22.342	22.342	2	7.4196E-05	19866	DP690-10	105.39	79.033			NaN	NaN	NaN	0	0	Median	0	0	0	1423	1501	1342	2756	6717	6717		1	9606
ATSAGSSPSCSLAGR	0	1	Unmodified	1407.6412	0.64124108	2037	Q9BXB5	OSBPL10	Oxysterol-binding protein-related protein 10	yes	yes	0	0	0	13	2											1				1		10.981	10.981	2	1.1588E-05	3581	DP690-11	147.28	109			0.61926	0.73989	NaN	1	0	Median	50877000	30077000	20800000	1424	2037	1343	2757;2758	6718;6719;6720;6721;6722;6723;6724	6718		7	9606
ATSEIFHSQSFLATGSNLR	0	1	Unmodified	2065.0229	0.022867292	2296	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	13	0													1				17.091	17.091	3	1.2156E-13	11596	DP690-13	154.31	117.31			NaN	NaN	NaN	0	0	Median	54708000	54708000	0	1425	2296	1344	2759	6725;6726;6727	6725		3	9606
ATSEVPGSQASPNPVPGDGLHR	0	1	Unmodified	2172.056	0.055958335	1863	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	12	0												2					13.556	13.556	2;3	3.751E-15	6960	DP690-12	206.13	172.93			0.59561	0.68744	5.4275	2	0	Median	306900000	182590000	124320000	1426	1863	1345	2760;2761	6728;6729;6730;6731;6732;6733;6734	6733		7	9606
ATSFLLALEPELEAR	0	1	Unmodified	1658.8879	0.88793694	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												1					22.386	22.386	2	2.0652E-14	18749	DP690-12	218.55	218.55			0.71477	0.84863	NaN	1	0	Median	38126000	21304000	16822000	1427	375	1346	2762	6735;6736;6737;6738;6739	6737		5	9606
ATSFSSAGEVPKPRPPSTR	1	2	Unmodified	1971.0174	0.017387984	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	2	11	0											2						12.369	12.369	3;4	0.017106	5571	DP690-11	59.345	43.403			0.58945	0.65146	10.982	2	0	Median	331300000	200970000	130330000	1428	144	1347	2763;2764	6740;6741;6742;6743;6744	6744		5	9606
ATSLGRPEEEEDELAHR	0	2	Unmodified	1937.9079	0.90789711	680	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	1	6	0						2											12.818	12.818	3;4	0.00065745	5462	DP690-6	84.508	64.836			0.80284	0.86347	1.2319	2	0	Median	47189000	25567000	21622000	1429	680	1348	2765;2766	6745;6746;6747;6748	6746		4	9606
ATSNVFAMFDQSQIQEFK	1	0	Oxidation (M)	2105.9728	0.97280556	123	O14950;P19105;P24844	MYL12B;MYL12A;MYL9	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9	yes	no	0	1	0	8	0								1									20.135	20.135	2	3.6258E-06	13766	DP690-8	136.83	108.04			1.3356	1.5176	NaN	1	0	Median	1682600	679610	1003000	1430	123	1349	2767	6749;6750;6751;6752	6749	132	4	9606
ATSNVFAMFDQSQIQEFKEAFNMIDQNR	1	1	2 Oxidation (M)	3340.5129	0.51287603	123	O14950;P19105;P24844	MYL12B;MYL12A;MYL9	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9	yes	no	0	2	1	16	0																1	22.809	22.809	3	0.0001296	17897	DP690-16	69.619	47.22			0.9899	1.1525	NaN	1	0	Median	2479500	1330600	1148900	1431	123	1350	2768	6753;6754	6754	132;133	2	9606
ATSPADALQYLLQFAR	0	1	Unmodified	1763.9206	0.92063405	1874	Q96HW7	INTS4	Integrator complex subunit 4	yes	yes	0	0	0	11	0											1						25.764	25.764	2	9.7647E-05	23639	DP690-11	126.66	105.71			0.78875	0.97796	NaN	1	0	Median	7299000	3793400	3505600	1432	1874	1351	2769	6755;6756;6757;6758	6757		4	9606
ATSTATSGFAGAIGQK	1	0	Unmodified	1466.7365	0.73652168	838	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	11	0											1						14.356	14.356	2	0.007448	8495	DP690-11	73.435	59.5			0.62475	0.76026	NaN	1	0	Median	36875000	22334000	14541000	1433	838	1352	2770	6759	6759		1	9606
ATTAALLLEAQAATGFLVDPVR	0	1	Unmodified	2227.2212	0.22123275	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.42	0.64									8	3	1						24.906	24.906	2;3	8.753499999999999E-88	20424	DP690-9	318.62	258.25			0.86592	1.0732	5.7393	3	0	Median	73237000	45849000	27388000	1434	1319	1353	2771;2772;2773;2774;2775;2776;2777;2778;2779;2780;2781;2782	6760;6761;6762;6763;6764;6765;6766;6767;6768;6769;6770;6771;6772;6773;6774;6775;6776;6777;6778;6779;6780	6780		21	9606
ATTAELFEEPFVADEYIER	0	1	Acetyl (Protein N-term)	2271.0583	0.058309325	90	O00471	EXOC5	Exocyst complex component 5	yes	yes	1	0	0	11	0											1						25.568	25.568	2	2.3757E-09	23519	DP690-11	171.21	108.92			NaN	NaN	NaN	0	0	Median	1180600	0	1180600	1435	90	1354	2783	6781;6782	6781		2	9606
ATTGTPTADRGDAAATDDPAAR	0	2	Acetyl (Protein N-term)	2142.9778	0.97776759	1564	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	1	0	1	3	0			3														12.985	12.985	2	0.00026383	5864	DP690-3	107.13	71.128			NaN	NaN	NaN	0	0	Median	11033000	0	11033000	1436	1564	1355	2784;2785;2786	6783;6784;6785	6783		3	9606
ATTLSNAVSSLASTGLSLTK	1	0	Unmodified	1921.0368	0.036786022	1214	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	12	0												1					22.228	22.228	2	7.8916E-32	18540	DP690-12	255.39	218.86			0.87489	1.047	NaN	1	0	Median	32594000	16922000	15672000	1437	1214	1356	2787	6786;6787;6788;6789	6786		4	9606
ATTSTNWILESQNINELK	1	0	Unmodified	2061.0378	0.037848654	251	O75381	PEX14	Peroxisomal membrane protein PEX14	yes	yes	0	0	0	13	0													1				19.505	19.505	2	0.00017949	14836	DP690-13	115.12	83.048			0.75814	0.87488	NaN	1	0	Median	14977000	7908600	7068700	1438	251	1357	2788	6790;6791;6792;6793;6794	6793		5	9606
ATVAAFAASEGHSHPR	0	1	Unmodified	1607.7805	0.78045218	2221	Q9NUP9;O14910	LIN7C;LIN7A	Protein lin-7 homolog C;Protein lin-7 homolog A	yes	no	0	0	0	15	0															2		11.013	11.013	3;4	1.4958E-12	3472	DP690-15	198.85	172.43			0.76442	0.85627	3.3125	2	0	Median	145090000	80070000	65020000	1439	2221	1358	2789;2790	6795;6796;6797;6798;6799;6800;6801;6802;6803;6804	6796		10	9606
ATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIK	2	0	Acetyl (Protein N-term)	3948.8389	0.83888066	394	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	1	0	1	7	0							1										16.526	16.526	3	1.7505E-07	10087	DP690-7	94.016	75.877			NaN	NaN	NaN	0	0	Median	58926000	58926000	0	1440	394	1359	2791	6805;6806;6807;6808	6807		4	9606
ATVLNLHQHLK	1	0	Unmodified	1272.7303	0.73025451	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								11.581	11.581	3	0.0052124	4095	DP690-9	83.883	83.883			0.7288	0.92931	NaN	1	0	Median	9097800	5580800	3517000	1441	1762	1360	2792	6809;6810	6810		2	9606
ATVMLYDDGNKR	1	1	Oxidation (M)	1397.6609	0.66091389	821	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	1	1	13	0													1				11.617	11.617	2	0.00088201	4214	DP690-13	112.71	87.152			0.68861	0.83687	NaN	1	0	Median	12052000	7503100	4548900	1442	821	1361	2793	6811;6812;6813;6814	6811	1236	4	9606
ATVMLYDDGNKR	1	1	Unmodified	1381.666	0.66599927	821	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	1	13	0													3				12.713	12.713	2;3	0.00089512	5499	DP690-13	114.86	88.795			0.79664	0.98657	NaN	1	0	Median	24287000	13029000	11258000	1443	821	1361	2794;2795;2796	6815;6816;6817;6818;6819	6815		5	9606
ATVSAPFGK	1	0	Unmodified	876.47052	0.47051757	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							13.219	13.219	2	0.0077219	5990	DP690-9	91.853	45.838			0.79344	0.89042	NaN	1	0	Median	338740000	289870000	48865000	1444	1319	1362	2797;2798	6820;6821;6822;6823;6824	6821		5	9606
ATYDGNHDTFR	0	1	Unmodified	1295.5531	0.553078	650	P33947;P24390	KDELR2;KDELR1	ER lumen protein-retaining receptor 2;ER lumen protein-retaining receptor 1	yes	no	0	0	0	10	0										2							10.952	10.952	2;3	0.0021587	3640	DP690-10	96.665	96.665			0.79305	0.97738	15.116	2	0	Median	204220000	106350000	97875000	1445	650	1363	2799;2800	6825;6826;6827;6828	6827		4	9606
ATYLEFIQQNEER	0	1	Acetyl (Protein N-term)	1681.7948	0.79476484	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	1	0	0	7	4			1								1						23.366	23.366	2	1.8808E-05	18997	DP690-3	185.96	144.56			0.84089	0.97938	21.143	2	0	Median	11106000	6340200	4765400	1446	1333	1364	2801;2802	6829;6830;6831;6832;6833;6834	6832		6	9606
ATYLEFIQQNEERDGVR	0	2	Acetyl (Protein N-term)	2109.0127	0.012696536	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	1	0	1	7	4			1								1						21.485	21.485	2	2.3162E-08	18625	DP690-11	170.95	138.96			0.96778	1.193	NaN	1	0	Median	36158000	13105000	23052000	1447	1333	1365	2803;2804	6835;6836;6837;6838	6835		4	9606
AVAFFLESIAMHDIIAAEK	1	0	Oxidation (M)	2091.0711	0.071063038	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.2	0.4									4	1							22.422	22.422	2;3	4.0519E-10	17289	DP690-9	153.92	134.94			0.83033	1.041	22.105	3	0	Median	334050000	194550000	139500000	1448	1046	1366	2805;2806;2807;2808;2809	6839;6840;6841;6842;6843;6844;6845;6846;6847;6848;6849;6850;6851;6852;6853;6854;6855;6856;6857	6847	1586	19	9606
AVAFFLESIAMHDIIAAEK	1	0	Unmodified	2075.0761	0.076148416	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.33	0.471									2	1							23.449	23.449	2;3	1.8105E-07	18766	DP690-9	163.02	135.89			0.76621	0.93416	5.0088	3	0	Median	46598000	25411000	21186000	1449	1046	1366	2810;2811;2812	6858;6859;6860;6861;6862;6863;6864;6865;6866;6867	6864		10	9606
AVAFQNPQTHVIENLHAAAYR	0	1	Unmodified	2349.1978	0.19781197	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13.5	0.5													1	1			15.893	15.893	3;4	2.1769E-23	9920	DP690-13	197.67	182.01			0.71082	0.7814	NaN	1	0	Median	564170000	352590000	211580000	1450	565	1367	2813;2814	6868;6869;6870;6871;6872;6873	6869		6	9606
AVAFSPVTELKK	2	0	Unmodified	1288.7391	0.73908786	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	1	3	0			1														14.591	14.591	3	0.0088331	8079	DP690-3	67.252	44.531			0.81947	0.87959	NaN	1	0	Median	43872000	23552000	20320000	1451	518	1368	2815	6874;6875	6874		2	9606
AVAGDASESALLK	1	0	Unmodified	1230.6456	0.6455814	379	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	7	4			1								1						14.457	14.457	2	0.0072199	8652	DP690-11	93.442	65.7			0.71644	0.81253	1.3902	2	0	Median	78284000	55920000	22364000	1452	379	1369	2816;2817	6876;6877;6878	6876		3	9606
AVAGLEGTSQQALQR	0	1	Unmodified	1527.8005	0.80051892	1598	Q8IUG5	MYO18B	Unconventional myosin-XVIIIb	yes	yes	0	0	0	10	0										1							14.166	14.166	2	1.4355E-05	8322	DP690-10	131.83	104.68			1.2396	1.5519	NaN	1	0	Median	39300000	20103000	19197000	1453	1598	1370	2818	6879;6880	6879		2	9606
AVAGNISDPGLQK	1	0	Unmodified	1268.6725	0.67246486	526	P18206	VCL	Vinculin	yes	yes	0	0	0	3	0			1														13.233	13.233	2	0.006334	6290	DP690-3	80.706	44.372			0.94394	0.99109	NaN	1	0	Median	5986100	2952100	3034000	1454	526	1371	2819	6881;6882	6881		2	9606
AVALDEAISQSTQFHDKIDQILESLER	1	1	Unmodified	3055.5462	0.5462083	1102	Q03001	DST	Dystonin	yes	yes	0	0	1	9	0									1								23.86	23.86	4	5.0147E-05	19332	DP690-9	86.211	74.15			0.89972	1.0435	NaN	1	0	Median	2072300	983930	1088400	1455	1102	1372	2820	6883;6884;6885	6884		3	9606
AVANETGAFFFLINGPEIMSK	1	0	Oxidation (M)	2271.1246	0.12455517	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	1	0	3	0			1														23.116	23.116	2	0.016671	18777	DP690-3	61.186	61.186			1.4429	1.494	NaN	1	0	Median	1145000	548610	596370	1456	893	1373	2821	6886	6886	1363	1	9606
AVANQTSATFLR	0	1	Unmodified	1277.6728	0.67279921	965	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	4	0				1													14.404	14.404	2	0.00017211	7757	DP690-4	153.97	114.67			1.2116	1.3903	NaN	1	0	Median	20405000	9315900	11089000	1457	965	1374	2822	6887;6888;6889;6890	6888		4	9606
AVANYDSVEEGEK	1	0	Unmodified	1409.6311	0.63105355	838	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	11	0											1						12.922	12.922	2	0.014209	6319	DP690-11	103.31	69.567			NaN	NaN	NaN	0	0	Median	0	0	0	1458	838	1375	2823	6891	6891		1	9606
AVAPSIIFFDELDALAVER	0	1	Unmodified	2075.0939	0.09390697	1672	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	11	0											1						25.923	25.923	2	0.0015095	23915	DP690-11	85.909	57.277			1.0897	1.2768	NaN	1	0	Median	1822500	1082300	740200	1459	1672	1376	2824	6892;6893;6894	6892		3	9606
AVAQALEVIPR	0	1	Unmodified	1165.6819	0.68190733	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	8	4				1								1					17.014	17.014	2	7.6932E-05	11853	DP690-12	138.08	124.5			1.1291	1.2774	35.186	2	0	Median	151500000	72739000	78763000	1460	791	1377	2825;2826	6895;6896;6897;6898;6899;6900;6901;6902;6903	6897		9	9606
AVASAAAALVLK	1	0	Unmodified	1083.6652	0.66519463	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															17.084	17.084	2	0.015263	10257	DP690-2	73.233	50.704			1.6273	1.6316	NaN	1	0	Median	4806100	1691400	3114700	1461	2482	1378	2827	6904;6905	6904		2	9606
AVASPEATVSQTDENK	1	0	Unmodified	1645.7795	0.7795087	1454	Q9Y4E1;Q641Q2	FAM21C;FAM21A	WASH complex subunit FAM21C;WASH complex subunit FAM21A	yes	no	0	0	0	10	0										1							12.026	12.026	2	6.8941E-07	5536	DP690-10	145.14	103.75			0.75951	0.92728	NaN	1	0	Median	174270000	97649000	76621000	1462	1454	1379	2828	6906	6906		1	9606
AVAVGRPSNEELR	0	2	Acetyl (Protein N-term)	1438.7528	0.75284044	2231	Q9NVA2	SEPT11	Septin-11	yes	yes	1	0	1	13	0													1				14.146	14.146	2	1.396E-05	7523	DP690-13	125.74	75.696			0.69788	0.80132	NaN	1	0	Median	155180000	94087000	61089000	1463	2231	1380	2829	6907;6908;6909	6907		3	9606
AVAWCPWQSNVLATGGGTSDR	0	1	Unmodified	2232.0382	0.03819978	1163	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	0	0	12	0												1					19.931	19.931	2	0.043978	15749	DP690-12	85.271	55.095			NaN	NaN	NaN	0	0	Median	0	0	0	1464	1163	1381	2830	6910	6910		1	9606
AVCMLSNTTAIAEAWAR	0	1	Oxidation (M)	1879.8921	0.89205282	1032;1521;452;1033	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;P68366	TUBA3E;TUBA1B;TUBA1A;TUBA4A	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain	no	no	0	1	0	6.5	3.77				2	1								1				19.066	19.066	2	6.0507000000000004E-24	14214	DP690-13	267.07	244.04			1.0469	1.1328	0.52174	2	0	Median	590150000	282370000	307780000	1465	452;1032;1521;1033	1382	2831;2832;2833;2834	6911;6912;6913;6914;6915;6916;6917;6918;6919;6920;6921;6922	6914	521	12	9606
AVCMLSNTTAIAEAWAR	0	1	Unmodified	1863.8971	0.89713819	1032;1521;452;1033	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;P68366	TUBA3E;TUBA1B;TUBA1A;TUBA4A	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain	no	no	0	0	0	9.25	4.26					2								1	1			20.866	20.866	2	7.447E-48	15332	DP690-5	257.13	200.18			NaN	NaN	NaN	0	0	Median	180050000	0	180050000	1466	452;1032;1521;1033	1382	2835;2836;2837;2838	6923;6924;6925;6926;6927;6928	6927		6	9606
AVCMLSNTTAVAEAWAR	0	1	Oxidation (M)	1865.8764	0.87640275	1977	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	1	0	7.67	3.77					2								1				18.127	18.127	2	1.1096E-17	13002	DP690-13	222.72	222.72			1.1205	1.2485	5.1805	2	0	Median	230180000	111880000	118300000	1467	1977	1383	2839;2840;2841	6929;6930;6931;6932;6933;6934;6935;6936;6937;6938;6939;6940	6929	2519	12	9606
AVCMLSNTTAVAEAWAR	0	1	Unmodified	1849.8815	0.88148813	1977	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	0	0	9	4					1								1				19.884	19.884	2	1.0172E-17	14151	DP690-5	218.62	183.85			1.1725	1.3163	10.762	2	0	Median	143450000	65154000	78298000	1468	1977	1383	2842;2843	6941;6942;6943;6944;6945;6946;6947;6948;6949;6950;6951;6952;6953	6949		13	9606
AVDDGVNTFK	1	0	Unmodified	1064.5138	0.51383895	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	4	0				1													13.43	13.43	2	0.00015514	6482	DP690-4	134.77	75.984			1.5264	1.617	NaN	1	0	Median	74548000	29925000	44623000	1469	826	1384	2844	6954;6955;6956;6957	6957		4	9606
AVDEAVILLQEIGVLDQR	0	1	Unmodified	1980.0892	0.089155943	1527	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	11	0											1						25.266	25.266	2	0.001847	23216	DP690-11	116.63	77.073			NaN	NaN	NaN	0	0	Median	906950	906950	0	1470	1527	1385	2845	6958;6959	6959		2	9606
AVDIPHMDIEALK	1	0	Oxidation (M)	1466.7439	0.74391524	1004	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	15	0															2		15.467	15.467	2	0.0027223	9401	DP690-15	123.01	74.916			NaN	NaN	NaN	0	0	Median	0	0	0	1471	1004	1386	2846;2847	6960;6961	6961	1526	2	9606
AVDIPHMDIEALKK	2	0	Oxidation (M)	1594.8389	0.83887826	1004	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	1	15	0															2		13.863	13.863	3;4	0.0014497	7211	DP690-15	79.089	66.668			1.6052	1.8388	83.28	2	0	Median	237320000	108130000	129190000	1472	1004	1387	2848;2849	6962;6963;6964;6965;6966	6965	1526	5	9606
AVDSLVPIGR	0	1	Unmodified	1025.5869	0.58694431	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	12.5	0.5												1	1				16.4	16.4	2	7.4929E-05	11038	DP690-12	164.53	111.6			0.73721	0.84224	0.72593	2	0	Median	413960000	240450000	173520000	1473	585	1388	2850;2851	6967;6968;6969;6970;6971;6972;6973;6974;6975	6967		9	9606
AVDSQILPK	1	0	Unmodified	969.5495	0.54949617	1098	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	14	0														1			13.847	13.847	2	0.017252	7175	DP690-14	82.241	47.988			0.95215	1.1355	NaN	1	0	Median	130130000	64398000	65728000	1474	1098	1389	2852	6976	6976		1	9606
AVDTSLYILPK	1	0	Unmodified	1218.686	0.68598966	2183	Q9NPH0	ACP6	Lysophosphatidic acid phosphatase type 6	yes	yes	0	0	0	6	0						1											18.156	18.156	2	0.012226	11981	DP690-6	75.378	59.763			0.64289	0.72053	NaN	1	0	Median	4081300	2622500	1458700	1475	2183	1390	2853	6977	6977		1	9606
AVEDDFVEMR	0	1	Oxidation (M)	1225.5285	0.52850274	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	1	0	4	0				1													14.676	14.676	2	0.025588	8106	DP690-4	76.064	40.769			0.87958	1.0053	NaN	1	0	Median	22096000	11330000	10767000	1476	2000	1391	2854	6978	6978	2534	1	9606
AVEDIHGLFSLSK	1	0	Unmodified	1414.7456	0.7456298	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	6	4		1								1							17.92	17.92	3	0.00052332	13742	DP690-10	96.866	59.912			1.122	1.2422	2.3723	2	0	Median	155380000	75230000	80152000	1477	1252	1392	2855;2856	6979;6980;6981;6982;6983;6984	6981		6	9606
AVEEEEEETANVEMSEK	1	0	Oxidation (M)	1967.8154	0.81536144	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	1	0	7	3.56		1							1	1							13.342	13.342	2	2.9992E-22	6294	DP690-9	245.5	148.74			0.92281	1.1807	NaN	1	0	Median	12591000	5664000	6926700	1478	1048	1393	2857;2858;2859	6985;6986;6987;6988;6989;6990;6991	6989	1648	7	9606
AVEEEEEETANVEMSEK	1	0	Unmodified	1951.8204	0.82044682	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									3								14.437	14.437	2	2.5135E-05	7777	DP690-9	171.26	144.85			0.97363	1.21	NaN	1	0	Median	4325500	2110300	2215200	1479	1048	1393	2860;2861;2862	6992;6993;6994	6992		2	9606
AVEEQIEYLQK	1	0	Unmodified	1348.6874	0.68744622	1448	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	11	0											1						15.553	15.553	2	0.055528	10324	DP690-11	60.102	37.573			0.76251	0.92247	NaN	1	0	Median	61300000	36338000	24962000	1480	1448	1394	2863	6995	6995		1	9606
AVEIVTSTSAAK	1	0	Unmodified	1175.6398	0.63976774	1299	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	10	0										1							12.691	12.691	2	0.0043421	6033	DP690-10	121.83	74.173			NaN	NaN	NaN	0	0	Median	30712000	0	30712000	1481	1299	1395	2864	6996	6996		1	9606
AVELLGDIVQNCSLEDSQIEK	1	0	Unmodified	2359.1577	0.15770579	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	13	0													2				20.828	20.828	2	3.6173E-44	16575	DP690-13	250.46	250.46			0.85328	0.9665	5.2879	2	0	Median	275680000	150880000	124810000	1482	637	1396	2865;2866	6997;6998;6999;7000;7001	7001		5	9606
AVELLGDIVQNCSLEDSQIEKER	1	1	Unmodified	2644.3014	0.30140992	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	1	13.2	1.92									1				4	1	1	1	19.989	19.989	2;3	3.7987E-44	14584	DP690-13	287.43	287.43			0.72884	0.80084	47.842	7	0	Median	2147600000	1182200000	965380000	1483	637	1397	2867;2868;2869;2870;2871;2872;2873;2874	7002;7003;7004;7005;7006;7007;7008;7009;7010;7011;7012;7013;7014;7015;7016;7017;7018;7019;7020;7021;7022;7023;7024;7025;7026;7027	7009		26	9606
AVENPTATEIQDVCSAVGLNVFLEK	1	0	Unmodified	2703.3425	0.34254645	431	P09132	SRP19	Signal recognition particle 19 kDa protein	yes	yes	0	0	0	16	0																1	23.474	23.474	2	0.053914	18427	DP690-16	74.812	47.164			NaN	NaN	NaN	0	0	Median	0	0	0	1484	431	1398	2875	7028	7028		1	9606
AVESITSLEAIIIPYR	0	1	Unmodified	1773.9877	0.98765098	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								23.102	23.102	2	3.5536E-12	18511	DP690-9	201.6	178.38			0.80504	0.99364	NaN	1	0	Median	2471400	1565800	905540	1485	1762	1399	2876	7029;7030;7031;7032;7033	7033		5	9606
AVEVQGPSLESGDHGK	1	0	Unmodified	1608.7744	0.77436375	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									2	2							12.317	12.317	2;3	4.6428E-07	4940	DP690-9	171.32	155.36			0.75621	0.87295	8.3098	4	0	Median	446460000	263150000	183310000	1486	1145	1400	2877;2878;2879;2880	7034;7035;7036;7037;7038;7039;7040;7041;7042;7043;7044;7045;7046;7047;7048;7049;7050;7051;7052	7049		19	9606
AVEYYFASDASAVIEHTNR	0	1	Unmodified	2142.0018	0.0017974991	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	3.33	0.471			2	1													18.453	18.453	3	3.0942E-07	13199	DP690-3	140.89	123.92			0.83013	0.95111	NaN	1	0	Median	25656000	15868000	9787900	1487	1122	1401	2881;2882;2883	7053;7054;7055	7053		3	9606
AVFFDLDNTLIDTAGASR	0	1	Unmodified	1924.9531	0.95305639	1712	Q8TBE9	NANP	N-acylneuraminate-9-phosphatase	yes	yes	0	0	0	7	0							1										22.314	22.314	2	9.916E-14	17266	DP690-7	194.06	194.06			0.80524	0.91547	NaN	1	0	Median	4198700	2452700	1745900	1488	1712	1402	2884	7056;7057;7058	7056		3	9606
AVFPSIVGR	0	1	Unmodified	944.54435	0.54435122	926;1023;1029	P60709;Q6S8J3;A5A3E0;P0CG38;P63261;P68032;P68133;P63267;P62736	ACTB;POTEE;POTEF;POTEI;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	12.2	3.17					1	2			1	1	1	1	1	10	1	1	18.545	18.545	1;2	0.000359	11552	DP690-14	157.21	110.84			0.75878	0.88127	24.802	13	0	Median	10777000000	6070599999.999999	4706200000	1489	926;1023;1029	1403	2885;2886;2887;2888;2889;2890;2891;2892;2893;2894;2895;2896;2897;2898;2899;2900;2901;2902;2903;2904	7059;7060;7061;7062;7063;7064;7065;7066;7067;7068;7069;7070;7071;7072;7073;7074;7075;7076;7077;7078;7079;7080;7081;7082;7083;7084;7085;7086;7087;7088;7089;7090;7091;7092;7093;7094;7095;7096;7097;7098;7099;7100;7101;7102;7103;7104;7105	7069		46	9606
AVFPSIVGRPR	0	2	Unmodified	1197.6982	0.6982261	926;1023;1029	P60709;Q6S8J3;A5A3E0;P0CG38;P63261;P68032;P68133;P63267;P62736	ACTB;POTEE;POTEF;POTEI;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	1	12.5	3.08						4			2	1	1		1	16	2	2	16.696	16.696	2;3	1.1302E-05	8464	DP690-14	168.25	140.43			1.4081	1.6548	68.709	19	0	Median	40952000000	18336000000	22616000000	1490	926;1023;1029	1404	2905;2906;2907;2908;2909;2910;2911;2912;2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924;2925;2926;2927;2928;2929;2930;2931;2932;2933	7106;7107;7108;7109;7110;7111;7112;7113;7114;7115;7116;7117;7118;7119;7120;7121;7122;7123;7124;7125;7126;7127;7128;7129;7130;7131;7132;7133;7134;7135;7136;7137;7138;7139;7140;7141;7142;7143;7144;7145;7146;7147;7148;7149;7150;7151;7152;7153;7154;7155;7156;7157;7158;7159;7160;7161;7162;7163;7164;7165;7166;7167;7168;7169;7170;7171;7172;7173;7174;7175;7176;7177;7178;7179;7180;7181;7182;7183;7184;7185;7186;7187;7188;7189;7190;7191;7192;7193	7131		88	9606
AVFQANQENLPILK	1	0	Unmodified	1583.8671	0.86714192	379	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	11	0											1						18.297	18.297	2	7.9971E-05	14168	DP690-11	155.11	136.16			0.75562	0.89002	NaN	1	0	Median	121920000	69286000	52629000	1491	379	1405	2934	7194;7195;7196;7197	7195		4	9606
AVFVDLEPTVIDEIR	0	1	Unmodified	1714.9142	0.91415169	1033	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	9	4					1								1				21.769	21.769	2	0.00019572	16538	DP690-5	117.86	96.487			0.98685	1.12	14.336	2	0	Median	30433000	16700000	13733000	1492	1033	1406	2935;2936	7198;7199;7200	7199		3	9606
AVFVDLEPTVIDEVR	0	1	Unmodified	1700.8985	0.89850163	1032;1521;1977	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	9	4.5		1	1	2	2	1	1	1	1			1	4	1	1	1	21.651	21.651	2	9.716500000000001E-20	16678	DP690-13	285.83	251.06			0.96642	1.0469	21.609	15	0	Median	2836100000	1408800000	1427300000	1493	1032;1521;1977	1407	2937;2938;2939;2940;2941;2942;2943;2944;2945;2946;2947;2948;2949;2950;2951;2952;2953;2954	7201;7202;7203;7204;7205;7206;7207;7208;7209;7210;7211;7212;7213;7214;7215;7216;7217;7218;7219;7220;7221;7222;7223;7224;7225;7226;7227;7228;7229;7230;7231;7232;7233;7234;7235;7236;7237;7238;7239;7240;7241;7242;7243;7244;7245;7246;7247;7248;7249;7250;7251;7252;7253;7254;7255;7256;7257;7258	7205		58	9606
AVFVDLEPTVVDEVR	0	1	Unmodified	1686.8829	0.88285156	452	P0DPH7;P0DPH8;Q6PEY2	TUBA3E	Tubulin alpha-3E chain	yes	no	0	0	0	9	4					1								1				20.374	20.374	2	1.8087E-17	14818	DP690-5	214.26	152.67			0.91587	1.1027	NaN	1	0	Median	125480000	78192000	47292000	1494	452	1408	2955;2956	7259;7260;7261;7262;7263;7264	7263		6	9606
AVGHPFVIQLGR	0	1	Unmodified	1292.7353	0.73533988	128	O14980	XPO1	Exportin-1	yes	yes	0	0	0	11	0											1						15.998	15.998	3	0.043554	10801	DP690-11	94.692	64.688			0.78293	0.93919	NaN	1	0	Median	111530000	61184000	50343000	1495	128	1409	2957	7265	7265		0	9606
AVGPSSTQLYMVR	0	1	Oxidation (M)	1423.7129	0.71294946	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	1	0	3	0			1														14.871	14.871	2	0.00088529	8429	DP690-3	108.43	93.752			0.79167	0.89835	NaN	1	0	Median	27505000	13665000	13841000	1496	1531	1410	2958	7266;7267;7268;7269	7266	2207	4	9606
AVGTQTLSGAGLLK	1	0	Unmodified	1314.7507	0.75071518	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	4	0				1													16.459	16.459	2	1.0938E-06	10446	DP690-4	192.38	131.94			0.94157	1.0087	NaN	1	0	Median	44674000	22981000	21694000	1497	1227	1411	2959	7270;7271;7272;7273	7272		4	9606
AVHLQGHEGPVYAVHAVYQR	0	1	Unmodified	2230.1396	0.13956881	1472	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	3	0			1														13.367	13.367	4	0.00077445	6470	DP690-3	74.993	63.336			1.0959	1.2521	NaN	1	0	Median	24163000	12715000	11449000	1498	1472	1412	2960	7274;7275;7276	7274		3	9606
AVIFCLSADKK	2	0	Unmodified	1250.6693	0.66929373	932	P60981	DSTN	Destrin	yes	yes	0	0	1	8	0								3									14.781	14.781	2;3	0.00017574	7916	DP690-8	128.86	89.553			1.1983	1.3741	27.635	2	0	Median	36432000	17263000	19170000	1499	932	1413	2961;2962;2963	7277;7278;7279;7280;7281;7282;7283;7284	7280		8	9606
AVIGMTAGATGAFVGTPAEVALIR	0	1	Oxidation (M)	2288.2199	0.21985254	1101	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	1	0	15	0															1		20.298	20.298	2	4.5225E-53	15535	DP690-15	249.36	223.25			0.66157	0.76309	NaN	1	0	Median	8375800	5231000	3144800	1500	1101	1414	2964	7285;7286;7287;7288	7287	1718	4	9606
AVIHLLLCQLR	0	1	Unmodified	1334.7857	0.7856609	332	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	10	0										1							18.12	18.12	3	0.0055914	14069	DP690-10	97.565	68.76			NaN	NaN	NaN	0	0	Median	19973000	0	19973000	1501	332	1415	2965	7289	7289		1	9606
AVIHYRDDETMYVESK	1	1	Oxidation (M)	1970.9044	0.90439164	139	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	1	1	14	0														1			12.736	12.736	3	0.00025502	5731	DP690-14	101.61	88.434			0.86236	1.0458	NaN	1	0	Median	65624000	35398000	30226000	1502	139	1416	2966	7290;7291;7292;7293	7291	157	4	9606
AVITSLLDQIPEMFADTR	0	1	Oxidation (M)	2035.0296	0.029592154	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	1	0	8.33	3.77			1								2						23.149	23.149	2	2.7901E-11	20713	DP690-11	174.94	148.81			0.7221	0.83798	1.5309	2	0	Median	43059000	24589000	18470000	1503	883	1417	2967;2968;2969	7294;7295;7296;7297;7298;7299;7300	7295	1338	7	9606
AVITSLLDQIPEMFADTR	0	1	Unmodified	2019.0347	0.034677532	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	11	0											1						25.526	25.526	2	1.3403E-29	23394	DP690-11	237.41	204.41			0.84787	1.0417	NaN	1	0	Median	14564000	8058300	6505800	1504	883	1417	2970	7301;7302;7303;7304;7305	7303		5	9606
AVKDELLGEKPEVK	3	0	Unmodified	1553.8665	0.86647322	423	P08651	NFIC	Nuclear factor 1 C-type	yes	yes	0	0	2	13	0													1				12.884	12.884	4	0.0062365	5842	DP690-13	78.615	78.615			0.8027	0.84085	NaN	1	0	Median	17531000	9545300	7985500	1505	423	1418	2971	7306;7307	7307		2	9606
AVLCPPPVK	1	0	Unmodified	979.55247	0.55247306	1012	P63000;P60763	RAC1;RAC3	Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3	yes	no	0	0	0	11.5	3.5								1							1		13.402	13.402	2	0.019873	6279	DP690-8	79.597	79.597			0.71036	0.82932	22.731	2	0	Median	24642000	15034000	9608200	1506	1012	1419	2972;2973	7308;7309	7309		2	9606
AVLDALLEGK	1	0	Unmodified	1027.5914	0.59136099	763;1048	P78559;P46821	MAP1A;MAP1B	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2;Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	no	no	0	0	0	14.6	0.728														4	2	1	19.517	19.517	2	0.00042361	14530	DP690-15	120.87	58.404			0.89803	1.0333	11.197	2	0	Median	93354000	50848000	42506000	1507	1048;763	1420	2974;2975;2976;2977;2978;2979;2980	7310;7311;7312;7313;7314;7315;7316;7317;7318;7319;7320	7315		11	9606
AVLEQEETAAASR	0	1	Unmodified	1373.6787	0.67867245	2439	Q9Y2J2	EPB41L3	Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed	yes	yes	0	0	0	8.33	3.77			1								2						13.088	13.088	2	0.00018359	6118	DP690-3	156.48	110.48			0.62693	0.70374	NaN	1	0	Median	7876700	3821000	4055600	1508	2439	1421	2981;2982;2983	7321;7322;7323;7324;7325	7323		5	9606
AVLFCLSEDK	1	0	Unmodified	1180.5798	0.57981002	572	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	12	4								1								1	17.72	17.72	2	0.00057987	12014	DP690-16	116.37	96.375			0.79934	0.92626	12.67	2	0	Median	22134000	11855000	10279000	1509	572	1422	2984;2985	7326;7327;7328;7329;7330;7331	7326		6	9606
AVLFCLSEDKK	2	0	Unmodified	1308.6748	0.67477304	572	P23528	CFL1	Cofilin-1	yes	yes	0	0	1	12.6	3.77								2							1	2	15.205	15.205	2;3	7.9269E-05	8217	DP690-8	120.63	99.235			0.85176	0.92686	4.0255	5	0	Median	1385200000	753470000	631730000	1510	572	1423	2986;2987;2988;2989;2990	7332;7333;7334;7335;7336;7337;7338;7339;7340;7341;7342;7343;7344;7345;7346;7347;7348;7349	7345		18	9606
AVLIAGQPGTGK	1	0	Unmodified	1110.6397	0.63970816	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	13	0													1				12.978	12.978	2	0.026836	6034	DP690-13	68.846	51.378			0.81429	0.92826	NaN	1	0	Median	110500000	61660000	48838000	1511	2427	1424	2991	7350	7350		1	9606
AVLLDLEPR	0	1	Unmodified	1024.5917	0.59169534	567	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	13	0													1				18.048	18.048	2	0.020944	12864	DP690-13	78.516	45.704			0.60241	0.71942	NaN	1	0	Median	98925000	58376000	40549000	1512	567	1425	2992	7351	7351		1	9606
AVLLGPPGAGK	1	0	Unmodified	978.58622	0.58621603	890	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	15	0															1		14.258	14.258	2	0.003883	7705	DP690-15	90.37	39.034			0.63574	0.73364	NaN	1	0	Median	51823000	31932000	19892000	1513	890	1426	2993	7352;7353;7354;7355	7353		4	9606
AVLLVGLCDSGK	1	0	Unmodified	1230.6642	0.66420836	2502	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	15	0															1		17.777	17.777	2	0.00095662	12402	DP690-15	105.86	52.181			0.68505	0.78682	NaN	1	0	Median	58188000	34477000	23711000	1514	2502	1427	2994	7356;7357;7358;7359	7359		4	9606
AVLNPLCQVDYR	0	1	Unmodified	1446.7289	0.72893388	1332;1333	Q15437;Q15436	SEC23B;SEC23A	Protein transport protein Sec23B;Protein transport protein Sec23A	no	no	0	0	0	9	3.46			1								3						17.832	17.832	2	0.00084923	13486	DP690-11	139.38	87.854			0.9407	1.0272	NaN	1	0	Median	57099000	26550000	30548000	1515	1333;1332	1428	2995;2996;2997;2998	7360;7361;7362;7363;7364;7365;7366	7360		7	9606
AVLNPTPIKR	1	1	Unmodified	1107.6764	0.67642802	1062	P84095	RHOG	Rho-related GTP-binding protein RhoG	yes	yes	0	0	1	16	0																1	11.588	11.588	3	0.049804	4189	DP690-16	64.841	39.033			NaN	NaN	NaN	0	0	Median	1498500	0	1498500	1516	1062	1429	2999	7367	7367		1	9606
AVLQPSINEEIQTVFNK	1	0	Unmodified	1929.0207	0.020742027	2095	Q9H147	DNTTIP1	Deoxynucleotidyltransferase terminal-interacting protein 1	yes	yes	0	0	0	14	0														2			21.082	21.082	2	0.0013444	16923	DP690-14	126.12	88.974			NaN	NaN	NaN	0	0	Median	28715000	11926000	16789000	1517	2095	1430	3000;3001	7368;7369	7368		2	9606
AVLSAEQLR	0	1	Unmodified	985.55564	0.55564418	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	5	0					1												13.908	13.908	2	0.0029889	6828	DP690-5	107.9	58.799			0.70675	0.73806	NaN	1	0	Median	44007000	23316000	20690000	1518	819	1431	3002	7370;7371;7372;7373	7372		4	9606
AVLSAEQLRDEEVHAGLGELLR	0	2	Unmodified	2404.271	0.27103649	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	1	7.67	3.77					2								1				19.024	19.024	3;4	0.00011016	13099	DP690-5	111.93	92.171			0.88549	1.0167	10.375	3	0	Plateau	1031899999.9999999	526320000	505560000	1519	819	1432	3003;3004;3005	7374;7375;7376;7377;7378;7379;7380;7381;7382;7383;7384;7385	7383		12	9606
AVLSSPAVTEQEVAQVASAILSLR	0	1	Unmodified	2438.3381	0.33805342	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	0	10.7	0.471										1	2						27.419	27.419	2	1.1178E-30	25408	DP690-11	198.95	198.95			0.85349	1.0173	5.4458	2	0	Median	5555200	3025800	2529400	1520	1234	1433	3006;3007;3008	7386;7387;7388;7389;7390;7391;7392;7393;7394	7393		9	9606
AVLTILLAHK	1	0	Unmodified	1077.691	0.69101545	1582	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	12	0												1					17.082	17.082	2	0.0017172	11927	DP690-12	104.06	94.874			0.98634	1.1619	NaN	1	0	Median	86473000	43879000	42594000	1521	1582	1434	3009	7395;7396	7396		2	9606
AVLTVVKDDDHGILDQFSR	1	1	Unmodified	2127.096	0.096032235	2438	Q9Y2D5	AKAP2	A-kinase anchor protein 2	yes	yes	0	0	1	11	0											2						17.77	17.77	3;4	0.00015777	13384	DP690-11	103.88	67.105			1.2953	1.5397	NaN	1	0	Median	166760000	114960000	51795000	1522	2438	1435	3010;3011	7397;7398;7399	7397		3	9606
AVLVDLEPGTMDSVR	0	1	Oxidation (M)	1616.808	0.80797206	1034;370;1389	P68371;P04350;Q3ZCM7	TUBB4B;TUBB4A;TUBB8	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain	no	no	0	1	0	10.2	4.79				1	1								2			1	17.666	17.666	2	0.00053006	11992	DP690-13	111.52	80.975			0.89943	0.98607	5.1779	4	0	Median	1368400000	723610000	644830000	1523	1034;370;1389	1436	3012;3013;3014;3015;3016	7400;7401;7402;7403;7404;7405;7406;7407;7408;7409;7410;7411;7412;7413;7414	7401	387	15	9606
AVLVDLEPGTMDSVR	0	1	Unmodified	1600.8131	0.81305744	1034;370;1389	P68371;P04350;Q3ZCM7	TUBB4B;TUBB4A;TUBB8	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain	no	no	0	0	0	5	0					1												18.776	18.776	2	1.6243E-05	12801	DP690-5	166.29	131.11			1.0243	1.0502	NaN	1	0	Median	314950000	162360000	152590000	1524	1034;370;1389	1436	3017	7415;7416;7417;7418	7418		4	9606
AVMDHVSDSFLETNVPLLVLIEAAK	1	0	Oxidation (M)	2726.4201	0.42006849	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	1	0	11	0											1						24.478	24.478	3	3.8829E-09	22346	DP690-11	137.38	113.33			NaN	NaN	NaN	0	0	Median	3078100	3078100	0	1525	657	1437	3018	7419	7419	926	1	9606
AVNILPNR	0	1	Unmodified	895.52395	0.52395013	2128	Q9H6Y2	WDR55	WD repeat-containing protein 55	yes	yes	0	0	0	13	0													1				14.009	14.009	2	0.054563	7294	DP690-13	113.08	38.645			0.77346	0.93371	NaN	1	0	Median	74075000	41128000	32947000	1526	2128	1438	3019	7420	7420		0	9606
AVNPFLADVDKLK	2	0	Unmodified	1428.7977	0.79766537	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	1	10	0										1							18.208	18.208	3	0.028272	14231	DP690-10	56.139	33.358			0.84709	1.0761	NaN	1	0	Median	45214000	18929000	26285000	1527	1240	1439	3020	7421	7421		1	9606
AVNSIISIVFGTR	0	1	Unmodified	1375.7823	0.78234966	1915	Q96QE5	TEFM	Transcription elongation factor, mitochondrial	yes	yes	0	0	0	14	0														1			23.272	23.272	2	0.0050583	19678	DP690-14	84.188	60.816			0.81493	1.0277	NaN	1	0	Median	2858100	1537800	1320300	1528	1915	1440	3021	7422	7422		1	9606
AVPETRPNHTIYINNLNEK	1	1	Acetyl (Protein N-term)	2264.1549	0.1549441	429	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	1	0	1	14	0														1			15.038	15.038	3	0.00055998	8888	DP690-14	86.016	70.495			0.68875	0.80481	NaN	1	0	Median	112560000	68329000	44227000	1529	429	1441	3022	7423;7424	7423		2	9606
AVPKEDIYSGGGGGGSR	1	1	Unmodified	1605.7747	0.7746981	1186	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	1	14	0														2			11.29	11.29	2;3	5.4919E-08	3700	DP690-14	167.18	128.73			0.83268	1.005	15.422	2	0	Median	130490000	74123000	56369000	1530	1186	1442	3023;3024	7425;7426;7427;7428;7429;7430	7425		6	9606
AVPLALALISVSNPR	0	1	Unmodified	1519.9086	0.9086128	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	3.5	0.5			1	1													22.111	22.111	2	3.1272E-08	17600	DP690-3	195.83	195.83			1.2389	1.4285	NaN	1	0	Median	18676000	8187400	10488000	1531	1190	1443	3025;3026	7431;7432;7433;7434;7435;7436;7437	7434		7	9606
AVPLAVPLGQTEVFQALQR	0	1	Unmodified	2036.1419	0.14186022	1580	Q86W42	THOC6	THO complex subunit 6 homolog	yes	yes	0	0	0	14	0														1			21.878	21.878	2	1.6885E-09	17996	DP690-14	147.96	147.96			0.71406	0.87709	NaN	1	0	Median	14475000	8311900	6162700	1532	1580	1444	3027	7438;7439;7440;7441;7442	7439		5	9606
AVPLIHQEGNR	0	1	Unmodified	1232.6626	0.66256887	67	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	6	0						1											11.087	11.087	3	0.0012443	3589	DP690-6	90.827	38.102			0.87564	1.0035	NaN	1	0	Median	6612700	3757400	2855300	1533	67	1445	3028	7443;7444	7444		2	9606
AVPQSPENVAK	1	0	Unmodified	1138.5982	0.59823728	1519	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	2	0		1															11.175	11.175	2	0.045801	3311	DP690-2	63.534	17.854			0.9818	0.96862	NaN	1	0	Median	2634800	1355700	1279000	1534	1519	1446	3029	7445;7446	7446		2	9606
AVQAFVDGSAIQVLK	1	0	Unmodified	1544.8562	0.85624288	2223	Q9NUQ6	SPATS2L	SPATS2-like protein	yes	yes	0	0	0	12	0												1					19.12	19.12	2	0.0016811	14668	DP690-12	91.123	91.123			0.85098	1.0243	NaN	1	0	Median	17601000	8394300	9206900	1535	2223	1447	3030	7447;7448	7447		2	9606
AVQAQGGESQQEAQR	0	1	Unmodified	1585.7445	0.7444606	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										2							10.301	10.301	2	3.29E-15	2633	DP690-10	229	206.67			0.71573	0.89646	NaN	1	0	Median	45025000	24032000	20993000	1536	1301	1448	3031;3032	7449;7450;7451	7449		3	9606
AVQDLCGWR	0	1	Unmodified	1103.5182	0.51821282	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	11.6	1.36									1			3	1				15.507	15.507	2	0.00077092	9451	DP690-13	134.81	65.635			0.87047	1.0609	0.16311	2	0	Median	616240000	64677000	551570000	1537	2298	1449	3033;3034;3035;3036;3037	7452;7453;7454;7455;7456;7457;7458;7459;7460	7457		9	9606
AVQEIMQEK	1	0	Unmodified	1074.5379	0.53794521	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	5	0					2												12.527	12.527	2	0.00082244	5075	DP690-5	131.06	58.272			0.72273	0.72084	NaN	1	0	Median	49709000	29922000	19787000	1538	559	1450	3038;3039	7461;7462;7463	7462		3	9606
AVQFFVQALR	0	1	Unmodified	1177.6608	0.66077796	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	8	4				1								1					19.219	19.219	2	0.00013069	13745	DP690-4	138.83	99.279			0.93411	1.0832	NaN	1	0	Median	38997000	8453400	30544000	1539	1946	1451	3040;3041	7464;7465;7466;7467;7468	7465		5	9606
AVQGFFTSNNATR	0	1	Unmodified	1411.6844	0.68442653	168	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	4	0				1													15.313	15.313	2	0.0065029	8973	DP690-4	80.245	63.867			1.216	1.4165	NaN	1	0	Median	11425000	5851900	5572900	1540	168	1452	3042	7469	7469		1	9606
AVQGMLDFDYVCSR	0	1	Oxidation (M)	1675.7334	0.73342691	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	1	0	3	0			1														17.678	17.678	2	0.00044611	12162	DP690-3	113.61	95.341			1.0512	1.202	NaN	1	0	Median	14105000	7089500	7015100	1541	873	1453	3043	7470;7471;7472	7470	1319	3	9606
AVQGMLDFDYVCSR	0	1	Unmodified	1659.7385	0.73851229	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	3	0			1														19.553	19.553	2	0.059137	14558	DP690-3	87.216	67.558			NaN	NaN	NaN	0	0	Median	0	0	0	1542	873	1453	3044	7473	7473		1	9606
AVQIVSHPFFGR	0	1	Unmodified	1356.7303	0.73025451	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	0	0	3	0			2														15.859	15.859	2;3	0.007833	9779	DP690-3	90.653	55.158			NaN	NaN	NaN	0	0	Median	64641000	0	64641000	1543	2061	1454	3045;3046	7474;7475;7476	7475		3	9606
AVQLGSLLVR	0	1	Unmodified	1054.6499	0.64987892	1842	Q96EK7	FAM120B	Constitutive coactivator of peroxisome proliferator-activated receptor gamma	yes	yes	0	0	0	11	0											1						18.279	18.279	2	0.069421	14186	DP690-11	58.23	29.08			0.72716	0.87418	NaN	1	0	Median	25716000	14265000	11452000	1544	1842	1455	3047	7477	7477		1	9606
AVQLYQQTANVFENEER	0	1	Unmodified	2037.9756	0.97558275	1956	Q99747	NAPG	Gamma-soluble NSF attachment protein	yes	yes	0	0	0	14	0														1			18.232	18.232	2	5.9736E-05	13403	DP690-14	124.07	86.924			0.96778	1.1735	NaN	1	0	Median	32420000	15213000	17207000	1545	1956	1456	3048	7478	7478		1	9606
AVQNVGNMDTPASR	0	1	Oxidation (M)	1474.6834	0.68344025	19	O43374;C9J798	RASA4;RASA4B	Ras GTPase-activating protein 4;Putative Ras GTPase-activating protein 4B	yes	no	0	1	0	11	0											1						10.598	10.598	2	0.0039547	2925	DP690-11	116.84	85.203			NaN	NaN	NaN	0	0	Median	21704000	21704000	0	1546	19	1457	3049	7479	7479	23	1	9606
AVQSLDKNGVDLLMK	2	0	Oxidation (M)	1645.8709	0.87090667	159	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	yes	yes	0	1	1	16	0																1	15.053	15.053	3	0.023563	8626	DP690-16	55.186	39.913			0.76193	0.86577	NaN	1	0	Median	22235000	11614000	10621000	1547	159	1458	3050	7480;7481	7481	179	2	9606
AVQSTINHVKEERPEK	2	1	Unmodified	1863.9803	0.9802742	1896	Q96MF7	NSMCE2	E3 SUMO-protein ligase NSE2	yes	yes	0	0	2	14	0														2			10.328	10.328	3;4	0.00078759	2557	DP690-14	99.927	81.094			0.86716	1.0437	4.9151	2	0	Median	38935000	20696000	18239000	1548	1896	1459	3051;3052	7482;7483	7483		2	9606
AVQTLQMELQQIMK	1	0	2 Oxidation (M)	1691.8586	0.85862742	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	2	0	4	0				1													18.584	18.584	2	0.0060571	13033	DP690-4	84.31	47.632			1.5989	1.7436	NaN	1	0	Median	10983000	3983900	6999200	1549	1122	1460	3053	7484;7485;7486;7487	7484	1742;1743	4	9606
AVSEEQQPALK	1	0	Unmodified	1198.6194	0.61936665	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	3	0			1														11.075	11.075	2	0.00010359	3477	DP690-3	153.08	103.98			0.76856	0.82598	NaN	1	0	Median	16811000	8747200	8064100	1550	1687	1461	3054	7488;7489;7490;7491;7492;7493	7490		6	9606
AVSEGNLLLLHEALAK	1	0	Unmodified	1676.9461	0.94612052	1421	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	14	0														1			18.206	18.206	3	0.0064771	13198	DP690-14	65.528	51.586			0.91683	1.0999	NaN	1	0	Median	116050000	55001000	61052000	1551	1421	1462	3055	7494;7495	7494		2	9606
AVSELELLGFIKPTK	2	0	Unmodified	1643.9498	0.94980892	2311	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	1	11	0											1						20.265	20.265	3	0.013104	16973	DP690-11	59.884	42.632			0.74842	0.88012	NaN	1	0	Median	50823000	25713000	25110000	1552	2311	1463	3056	7496;7497	7496		2	9606
AVSESQLKK	2	0	Acetyl (Protein N-term)	1030.5659	0.56587452	1958	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	1	0	1	13	0													1				11.448	11.448	2	0.0062029	3922	DP690-13	110.12	80.95			0.82943	0.93987	NaN	1	0	Median	30995000	17111000	13884000	1553	1958	1464	3057	7498	7498		0	9606
AVSILGDEVFR	0	1	Unmodified	1204.6452	0.64518747	1519	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	2	0		1															19.303	19.303	2	0.035843	12740	DP690-2	92.051	18.387			NaN	NaN	NaN	0	0	Median	0	0	0	1554	1519	1465	3058	7499	7499		1	9606
AVSISTEPPTYLR	0	1	Unmodified	1432.7562	0.75619449	1161	Q12824	SMARCB1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	yes	yes	0	0	0	13.5	0.5													1	1			16.476	16.476	2	2.286E-05	10873	DP690-14	178.84	138.9			0.62587	0.74794	14.395	2	0	Median	193930000	115740000	78186000	1555	1161	1466	3059;3060	7500;7501;7502;7503;7504;7505	7505		6	9606
AVSREDSVKPGAHLTVK	2	1	Unmodified	1792.9795	0.97954591	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	2	14	0														1			10.337	10.337	4	0.0033947	2578	DP690-14	77.13	58.455			0.77063	0.92755	NaN	1	0	Median	53202000	30837000	22365000	1556	848	1467	3061	7506;7507	7506		2	9606
AVSTGLPHMIQELQNHIHDEGLR	0	1	Oxidation (M)	2610.2973	0.29726801	1228	Q13617	CUL2	Cullin-2	yes	yes	0	1	0	3	0			1														17.056	17.056	5	7.995E-06	11191	DP690-3	120.71	98.01			NaN	NaN	NaN	0	0	Median	20149000	0	20149000	1557	1228	1468	3062	7508;7509	7509	1875	2	9606
AVSVTPIRDTK	1	1	Acetyl (Protein N-term)	1227.6823	0.68230126	2197	Q9NR56	MBNL1	Muscleblind-like protein 1	yes	yes	1	0	1	13	0													1				14.244	14.244	2	0.0014977	7617	DP690-13	132.88	73.63			NaN	NaN	NaN	0	0	Median	23190000	0	23190000	1558	2197	1469	3063	7510;7511	7510		2	9606
AVTELNEPLSNEDR	0	1	Unmodified	1585.7584	0.75837933	1113	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	15	0															1		14.728	14.728	2	7.938E-05	8397	DP690-15	184.36	134.89			0.79892	0.91943	NaN	1	0	Median	34761000	18966000	15795000	1559	1113	1470	3064	7512;7513	7512		2	9606
AVTELNEPLSNEDRNLLSVAYK	1	1	Unmodified	2474.2653	0.26528241	1113	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	1	15	0															1		18.536	18.536	3	0.00036645	13434	DP690-15	92.897	72.82			0.93852	1.1254	NaN	1	0	Median	7709500	3770400	3939100	1560	1113	1471	3065	7514;7515	7514		2	9606
AVTEQGAELSNEER	0	1	Unmodified	1531.7114	0.71142914	599	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	9.25	3.34							2	1							1		12.338	12.338	2	3.2730999999999997E-19	5142	DP690-15	285.83	229.57			0.94206	0.95674	9.279	3	0	Plateau	448020000	236240000	211780000	1561	599	1472	3066;3067;3068;3069	7516;7517;7518;7519;7520;7521;7522;7523;7524;7525;7526;7527;7528;7529;7530	7520		15	9606
AVTEQGHELSNEER	0	1	Unmodified	1597.7332	0.73322721	640	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	15	0															3		10.462	10.462	2;3	6.154E-06	2821	DP690-15	150.49	119.76			1.0021	1.1118	NaN	1	0	Median	90049000	47818000	42231000	1562	640	1473	3070;3071;3072	7531;7532;7533;7534;7535;7536;7537;7538	7531		8	9606
AVTGTHTLALAAK	1	0	Unmodified	1252.7139	0.71393574	806	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	yes	yes	0	0	0	14	0														1			11.897	11.897	3	0.028279	4691	DP690-14	54.871	54.871			1.034	1.25	NaN	1	0	Median	30254000	15217000	15037000	1563	806	1474	3073	7539	7539		1	9606
AVTGYKDPYSGK	2	0	Unmodified	1284.635	0.63501672	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.6	0.8									3	1	1						11.352	11.352	2;3	0.0003236	3688	DP690-9	120.03	98.638			0.7476	0.90592	2.7571	4	0	Median	159920000	77705000	82210000	1564	1319	1475	3074;3075;3076;3077;3078	7540;7541;7542;7543;7544;7545;7546;7547;7548;7549;7550;7551;7552;7553	7550		14	9606
AVTGYKDPYTGQQISLFQAMQK	2	0	Oxidation (M)	2489.2261	0.22606013	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	9.5	0.5									1	1							17.347	17.347	3	2.8959E-15	11530	DP690-9	167.51	159.78			0.6973	0.80516	2.5464	2	0	Median	272920000	163140000	109780000	1565	1319	1476	3079;3080	7554;7555;7556;7557;7558;7559;7560;7561;7562	7559	2013	9	9606
AVTGYRDPYSGSTISLFQAMQK	1	1	Oxidation (M)	2435.1791	0.17910994	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	9	0									1								17.533	17.533	3	0.00041838	11847	DP690-9	88.471	57.069			0.60326	0.69968	NaN	1	0	Median	7488700	2996300	4492400	1566	1319	1477	3081	7563;7564	7564	2014	2	9606
AVTGYRDPYTEQTISLFQAMK	1	1	Unmodified	2418.1889	0.18894634	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0										1							19.928	19.928	3	3.1223E-05	16570	DP690-10	120.9	92.94			0.76542	0.91753	NaN	1	0	Median	158780000	92492000	66289000	1567	1319	1478	3082	7565;7566;7567;7568	7565		4	9606
AVTGYRDPYTEQTISLFQAMK	1	1	Oxidation (M)	2434.1839	0.18386096	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	9.6	0.8									3	1	1						18.18	18.18	3	1.5307E-05	14157	DP690-10	123.83	84.465			0.66689	0.77347	NaN	1	0	Median	180640000	168800000	11833000	1568	1319	1478	3083;3084;3085;3086;3087	7569;7570;7571;7572;7573;7574;7575;7576;7577	7571	2015	9	9606
AVTHTSPEDVSFAESR	0	1	Unmodified	1731.8064	0.80639216	2005	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	3	0			1														13.247	13.247	3	0.0053834	6279	DP690-3	92.8	66.029			NaN	NaN	NaN	0	0	Median	8322800	0	8322800	1569	2005	1479	3088	7578	7578		1	9606
AVTPPMPLLTPATPGGLPPAAAVAAAAATAK	1	0	Oxidation (M)	2809.5412	0.54118668	2348	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	1	0	12	0												1					21.442	21.442	2	1.7234E-06	17696	DP690-12	102.5	86.323			NaN	NaN	NaN	0	0	Median	2198900	2198900	0	1570	2348	1480	3089	7579;7580	7580	2786	2	9606
AVVDAGITTK	1	0	Unmodified	973.54441	0.5444108	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	12	0												1					12.509	12.509	2	0.0040049	5491	DP690-12	92.051	54.406			0.84022	0.98217	NaN	1	0	Median	97356000	50148000	47208000	1571	2280	1481	3090	7581;7582;7583;7584	7583		4	9606
AVVGVVAGGGR	0	1	Unmodified	940.54541	0.54541385	1007	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	11	4							1								1		11.943	11.943	2	0.00012598	4582	DP690-7	135.84	80.401			0.93802	1.0312	1.3132	2	0	Median	217760000	110540000	107230000	1572	1007	1482	3091;3092	7585;7586;7587;7588;7589;7590;7591;7592	7590		8	9606
AVVIVDDR	0	1	Unmodified	885.49198	0.4919813	566;1322	P23246;Q15233	SFPQ;NONO	Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein	no	no	0	0	0	11	0											2						13.027	13.027	2	0.057314	6495	DP690-11	101.28	53.368			NaN	NaN	NaN	0	0	Median	0	0	0	1573	566;1322	1483	3093;3094	7593;7594	7594		2	9606
AVVLEYFTR	0	1	Unmodified	1096.5917	0.59169534	336	O95707	POP4	Ribonuclease P protein subunit p29	yes	yes	0	0	0	15	0															1		18.495	18.495	2	0.0033709	13365	DP690-15	106.36	83.575			3.2778	3.7939	NaN	1	0	Median	14982000	4387400	10594000	1574	336	1484	3095	7595;7596;7597;7598;7599	7595		5	9606
AVVMLEYVER	0	1	Oxidation (M)	1223.622	0.62200919	1228	Q13617	CUL2	Cullin-2	yes	yes	0	1	0	3	0			1														16.189	16.189	2	0.0076541	10293	DP690-3	109.71	78.22			NaN	NaN	NaN	0	0	Median	27278000	0	27278000	1575	1228	1485	3096	7600;7601	7600	1876	2	9606
AVVMLEYVER	0	1	Unmodified	1207.6271	0.62709457	1228	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	3	0			1														18.176	18.176	2	0.065673	12898	DP690-3	84.213	53.139			NaN	NaN	NaN	0	0	Median	7399900	0	7399900	1576	1228	1485	3097	7602;7603	7603		2	9606
AVVMPLQLIQEQAASPNAEIHILK	1	0	Oxidation (M)	2628.4309	0.43090795	1296	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	1	0	12	0												1					20.484	20.484	3	0.076107	16473	DP690-12	40.994	40.994			0.52748	0.64031	NaN	1	0	Median	9527300	6793600	2733700	1577	1296	1486	3098	7604	7604		0	9606
AVVPSYIPLVK	1	0	Unmodified	1184.7169	0.71689585	680	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	6	0						1											18.516	18.516	2	0.055764	12265	DP690-6	60.019	40.022			0.73157	0.84071	NaN	1	0	Median	11365000	6431100	4933800	1578	680	1487	3099	7605;7606	7605		2	9606
AVVQVFEGTSGIDAK	1	0	Unmodified	1519.7882	0.7882229	547	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	yes	yes	0	0	0	8	4				1								1					17.032	17.032	2	6.8053E-05	11889	DP690-12	124.39	84.327			0.80794	0.91604	3.1831	2	0	Median	49383000	27510000	21874000	1579	547	1488	3100;3101	7607;7608;7609;7610	7608		4	9606
AVVTHSSGNHGQALTYAAK	1	0	Unmodified	1910.9599	0.9598731	2076	Q9GZT4	SRR	Serine racemase	yes	yes	0	0	0	6	0						2											10.38	10.38	3;4	1.0327E-06	2777	DP690-6	132.4	113.73			0.66386	0.74708	13.389	2	0	Median	56177000	30453000	25725000	1580	2076	1489	3102;3103	7611;7612;7613;7614;7615;7616;7617;7618	7617		8	9606
AVVVNAAQLASYSQSK	1	0	Unmodified	1634.8628	0.86278482	1101	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	15	0															1		16.685	16.685	2	2.8643E-23	10944	DP690-15	264.3	220.89			0.82426	0.94051	NaN	1	0	Median	68335000	37346000	30988000	1581	1101	1490	3104	7619;7620;7621;7622	7621		4	9606
AVVYSNTIQSIMAIVK	1	0	Unmodified	1735.9542	0.95424237	377	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	0	14	0														1			22.865	22.865	2	5.6556E-06	19110	DP690-14	132.56	101.74			0.72387	0.86319	NaN	1	0	Median	18064000	9263600	8800800	1582	377	1491	3105	7623	7623		1	9606
AVYQARPQLHK	1	1	Unmodified	1309.7255	0.72550348	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	1	12	0												1					10.315	10.315	3	0.0040986	2602	DP690-12	78.098	78.098			0.87409	1.0524	NaN	1	0	Median	71271000	38178000	33093000	1583	1269	1492	3106	7624;7625	7624		2	9606
AVYTTTLDYNCR	0	1	Unmodified	1475.6715	0.67147858	1661	Q8N5W9	FAM101B	Filamin-interacting protein FAM101B	yes	yes	0	0	0	15	0															1		15.188	15.188	2	0.0014677	8977	DP690-15	100.48	77.157			0.65995	0.7629	NaN	1	0	Median	12535000	7334500	5200900	1584	1661	1493	3107	7626;7627	7626		2	9606
AWGPGLEGGVVGK	1	0	Unmodified	1225.6455	0.64552182	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	0.816									1	1	1						16.575	16.575	2	9.6978E-05	11779	DP690-10	167.12	117.31			0.77752	0.81113	6.4808	3	0	Plateau	2104599999.9999998	1186800000	917780000	1585	549	1494	3108;3109;3110	7628;7629;7630;7631;7632;7633;7634;7635;7636;7637;7638;7639;7640;7641	7633		14	9606
AWGPGLETGQVGK	1	0	Unmodified	1298.6619	0.66190017	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										1							15.622	15.622	2	7.3403E-05	10438	DP690-10	133.99	94.145			0.87025	1.0327	NaN	1	0	Median	254010000	139050000	114960000	1586	1270	1495	3111	7642;7643;7644;7645	7644		4	9606
AWGPGLHGGIVGR	0	1	Unmodified	1275.6836	0.68363867	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	9.5	0.5									1	1							14.658	14.658	3	0.0012271	8992	DP690-10	98.898	80.153			0.73917	0.88223	4.2827	2	0	Median	401590000	223940000	177640000	1587	250	1496	3112;3113	7646;7647;7648;7649	7646		4	9606
AYAALAALEK	1	0	Unmodified	1019.5651	0.56514624	1170	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	11	0											1						16.697	16.697	2	0.015319	11977	DP690-11	76.221	44.287			0.87689	1.0355	NaN	1	0	Median	117880000	63615000	54262000	1588	1170	1497	3114	7650;7651;7652;7653	7651		4	9606
AYAPGGPAYQPVVEAFGTDILHK	1	0	Unmodified	2400.2114	0.21139634	1178	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	4	0				1													20.497	20.497	3	1.4057E-06	15269	DP690-4	132.01	117.57			0.65975	0.71309	NaN	1	0	Median	8033800	4394800	3638900	1589	1178	1498	3115	7654;7655;7656	7654		3	9606
AYAYLFK	1	0	Acetyl (Protein N-term)	916.46945	0.46945494	935	P61019	RAB2A	Ras-related protein Rab-2A	yes	yes	1	0	0	15	0															1		22.532	22.532	1	0.026726	17825	DP690-15	80.377	27.694			NaN	NaN	NaN	0	0	Median	423410	423410	0	1590	935	1499	3116	7657	7657		1	9606
AYCEGCYVATLEK	1	0	Unmodified	1562.6745	0.67451505	1344	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	0	0	4	0				1													15.831	15.831	2	8.8496E-05	9632	DP690-4	136.02	114.35			0.8092	0.86743	NaN	1	0	Median	4269300	2397100	1872200	1591	1344	1500	3117	7658;7659	7658		2	9606
AYEAAASALQIATHTAFVAK	1	0	Unmodified	2033.0582	0.058190166	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	11	0											1						19.473	19.473	3	0.005195	15997	DP690-11	50.493	50.493			0.87423	1.0611	NaN	1	0	Median	77791000	41762000	36028000	1592	723	1501	3118	7660;7661;7662	7662		3	9606
AYEEQLAQLQQK	1	0	Unmodified	1447.7307	0.73070802	1211	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	2	0		1															15.294	15.294	2	0.0015364	8097	DP690-2	111.46	88.894			1.0475	1.0459	NaN	1	0	Median	3983800	1848500	2135300	1593	1211	1502	3119	7663	7663		1	9606
AYEVLKDEDLR	1	1	Unmodified	1349.6827	0.68269519	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	1	8.33	3.77			1								2						14.288	14.288	2;3	0.0026369	8365	DP690-11	109.42	73.037			0.98736	1.1454	25.606	3	0	Median	223110000	114560000	108540000	1594	1613	1503	3120;3121;3122	7664;7665;7666;7667	7665		4	9606
AYEVLKDEDLRK	2	1	Unmodified	1477.7777	0.77765821	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	2	7	4			1								1						12.674	12.674	3	3.8023E-05	5994	DP690-11	125.97	87.011			0.80568	0.97464	NaN	1	0	Median	208260000	106870000	101380000	1595	1613	1504	3123;3124	7668;7669;7670;7671;7672	7669		5	9606
AYEYVECPIR	0	1	Unmodified	1298.5965	0.59652272	879	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	14	0														1			15.281	15.281	2	0.00055678	9246	DP690-14	117.04	89.392			0.7695	0.9269	NaN	1	0	Median	69459000	41737000	27722000	1596	879	1505	3125	7673;7674	7673		2	9606
AYFHLLNQIAPK	1	0	Unmodified	1413.7769	0.77687035	484	P13797;Q14651	PLS3;PLS1	Plastin-3;Plastin-1	yes	no	0	0	0	4	0				1													17.212	17.212	3	0.00034143	11375	DP690-4	105.4	86.587			0.50758	0.5523	NaN	1	0	Median	22007000	14506000	7500400	1597	484	1506	3126	7675;7676;7677;7678	7676		4	9606
AYGENIGYSEKDR	1	1	Unmodified	1500.6845	0.68448611	380	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	1	13	0													2				12.125	12.125	2;3	0.00013638	4814	DP690-13	112.5	98.782			1.0662	1.2495	NaN	1	0	Median	57307000	27854000	29453000	1598	380	1507	3127;3128	7679;7680;7681;7682	7679		4	9606
AYGPGIEPTGNMVK	1	0	Oxidation (M)	1448.697	0.69696505	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	8	3.54		1							1	1	1						13.474	13.474	2	6.5185E-05	6389	DP690-9	133.75	104.2			0.73722	0.79143	10.274	4	0	Median	1697499999.9999998	981830000	715710000	1599	549	1508	3129;3130;3131;3132	7683;7684;7685;7686;7687;7688;7689;7690;7691;7692;7693;7694;7695;7696	7694	703	14	9606
AYGPGIEPTGNMVK	1	0	Unmodified	1432.7021	0.70205043	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8	3.54		1							1	1	1						15.031	15.031	2	3.1475E-05	9515	DP690-10	173.24	153.47			0.7241	0.85596	7.7406	4	0	Median	1253400000	717030000	536350000	1600	549	1508	3133;3134;3135;3136	7697;7698;7699;7700;7701;7702;7703;7704;7705;7706;7707;7708	7700		12	9606
AYHEQLSVAEITNACFEPANQMVK	1	0	Oxidation (M)	2765.2789	0.27890034	1032;1521;452;1033	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;P68366	TUBA3E;TUBA1B;TUBA1A;TUBA4A	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain	no	no	0	1	0	11.2	3.63					1								2	1			17.675	17.675	2;3	5.7673E-22	12398	DP690-13	180.32	169.43			0.84565	0.93499	17.384	4	0	Median	1584099999.9999998	820520000	763540000	1601	452;1032;1521;1033	1509	3137;3138;3139;3140	7709;7710;7711;7712;7713;7714;7715;7716;7717;7718;7719;7720;7721;7722;7723	7713	522	15	9606
AYHEQLSVAEITNACFEPANQMVK	1	0	Unmodified	2749.284	0.28398571	1032;1521;452;1033	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;P68366	TUBA3E;TUBA1B;TUBA1A;TUBA4A	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain	no	no	0	0	0	7.67	3.77					2								1				18.543	18.543	3	2.0203E-28	12496	DP690-5	201.85	158.73			0.84389	0.92596	NaN	1	0	Median	596390000	296130000	300260000	1602	452;1032;1521;1033	1509	3141;3142;3143	7724;7725;7726;7727;7728;7729;7730;7731;7732;7733	7728		10	9606
AYHEQLTVAEITNACFEPANQMVK	1	0	Oxidation (M)	2779.2946	0.2945504	1977	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	1	0	9	4					1								1				17.792	17.792	3	2.4324E-23	12499	DP690-13	193.51	193.51			0.86904	0.91136	4.7864	2	0	Median	415550000	212730000	202810000	1603	1977	1510	3144;3145	7734;7735;7736;7737;7738;7739;7740;7741;7742	7734	2520	9	9606
AYHEQLTVAEITNACFEPANQMVK	1	0	Unmodified	2763.2996	0.29963578	1977	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	0	0	9	4					1								1				18.678	18.678	3	2.4371E-16	12697	DP690-5	176.7	163.79			0.85549	0.91663	1.3589	2	0	Median	224720000	122710000	102010000	1604	1977	1510	3146;3147	7743;7744;7745;7746;7747;7748;7749	7748		7	9606
AYHMVCLDPDMEKAPEGK	2	0	Oxidation (M)	2105.922	0.92203231	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	1	10	0										1							13.444	13.444	4	0.047607	6981	DP690-10	46.68	28.446			0.59637	0.76298	NaN	1	0	Median	49019000	23372000	25647000	1605	1297	1511	3148	7750	7750		0	9606
AYIAYELNSVQHR	0	1	Unmodified	1562.7841	0.78414057	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		4															15.118	15.118	2;3	0.0010563	7907	DP690-2	106.26	68.832			NaN	NaN	NaN	0	0	Median	4607600	0	4607600	1606	1179	1512	3149;3150;3151;3152	7751;7752;7753;7754;7755	7755		5	9606
AYIQENLELVEK	1	0	Unmodified	1447.7559	0.75586013	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	11	0											1						17.397	17.397	2	0.00013234	12795	DP690-11	197.27	142.29			0.90802	0.98809	NaN	1	0	Median	340540000	182990000	157550000	1607	470	1513	3153	7756;7757;7758;7759	7756		4	9606
AYLCTITGFILPEK	1	0	Unmodified	1624.8535	0.85346569	276	O75818	RPP40	Ribonuclease P protein subunit p40	yes	yes	0	0	0	14	0														1			21.485	21.485	2	0.0012094	17533	DP690-14	97.911	97.911			0.77739	0.92455	NaN	1	0	Median	16227000	10014000	6213200	1608	276	1514	3154	7760;7761	7760		2	9606
AYLEGTCVEWLR	0	1	Unmodified	1495.7129	0.71294946	454	P10321	HLA-C	HLA class I histocompatibility antigen, Cw-7 alpha chain	yes	yes	0	0	0	14	0														1			19.285	19.285	2	0.020418	14664	DP690-14	97.915	46.152			NaN	NaN	NaN	0	0	Median	0	0	0	1609	454	1515	3155	7762	7762		1	9606
AYLPVNESFGFTADLR	0	1	Unmodified	1798.889	0.88899957	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	9	0									2								20.941	20.941	2	0.02802	15952	DP690-9	89.189	39.723			NaN	NaN	NaN	0	0	Median	4715600	0	4715600	1610	483	1516	3156;3157	7763;7764	7763		2	9606
AYLSSGGGFPEGPEPR	0	1	Unmodified	1619.758	0.7579854	69	O00192	ARVCF	Armadillo repeat protein deleted in velo-cardio-facial syndrome	yes	yes	0	0	0	11	0											1						16.22	16.22	2	0.072313	11169	DP690-11	84.169	43.58			NaN	NaN	NaN	0	0	Median	0	0	0	1611	69	1517	3158	7765	7765		1	9606
AYMCPFMQFIEGGR	0	1	Unmodified	1705.7415	0.74148917	883	P53992;O94855	SEC24C;SEC24D	Protein transport protein Sec24C;Protein transport protein Sec24D	yes	no	0	0	0	11	0											1						22.712	22.712	2	0.00029719	20155	DP690-11	121.36	104.78			0.78438	0.96654	NaN	1	0	Median	12173000	5788600	6384300	1612	883	1518	3159	7766;7767	7766		2	9606
AYPLADAHLTK	1	0	Unmodified	1198.6346	0.63462279	899	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	0	16	0																1	13.581	13.581	2	0.0002674	6658	DP690-16	120.99	88.574			0.76638	0.86198	NaN	1	0	Median	56405000	27054000	29351000	1613	899	1519	3160	7768;7769;7770;7771	7770		4	9606
AYPLADAHLTKK	2	0	Unmodified	1326.7296	0.7295858	899	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	1	16	0																1	11.63	11.63	3	0.012254	4184	DP690-16	62.694	35.266			0.82294	0.92527	NaN	1	0	Median	49352000	26657000	22695000	1614	899	1520	3161	7772;7773;7774	7774		3	9606
AYPVSGSPEYLTEDLPDSIQVGGR	0	1	Unmodified	2549.2286	0.22856255	1777	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	10	0										1							20.362	20.362	2	1.9191E-11	17275	DP690-10	163.8	124.79			NaN	NaN	NaN	0	0	Median	8995100	8995100	0	1615	1777	1521	3162	7775;7776	7775		2	9606
AYSDPSTGEPATYGELQQR	0	1	Unmodified	2068.9338	0.93377751	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	11.1	4.32		1							1		1	1	1		1	1	15.043	15.043	2	1.1663E-42	9445	DP690-11	302.63	245.69			0.77893	0.91844	14.132	4	0	Median	167730000	95806000	71920000	1616	1319	1522	3163;3164;3165;3166;3167;3168;3169	7777;7778;7779;7780;7781;7782;7783;7784;7785;7786;7787;7788;7789;7790;7791;7792;7793	7777		17	9606
AYSDQAIVNLLK	1	0	Unmodified	1333.7242	0.72416608	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	9.5	0.5									1	1							19.963	19.963	2	4.7378E-05	16631	DP690-10	128.35	86.921			0.84424	1.052	8.3375	2	0	Median	129030000	69074000	59956000	1617	1782	1523	3170;3171	7794;7795;7796;7797;7798;7799	7794		6	9606
AYTGFSSNSER	0	1	Unmodified	1217.5313	0.53127993	152	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	4	0				1													11.941	11.941	2	0.0021587	4667	DP690-4	96.665	67.969			1.1133	1.2951	NaN	1	0	Median	15437000	7117100	8319900	1618	152	1524	3172	7800	7800		1	9606
AYTNFDAER	0	1	Unmodified	1085.4778	0.47778779	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	9	4.97	1					1		1	1					1		1	13.194	13.194	2	1.3613E-05	6153	DP690-16	178.3	148.11			0.85743	0.91272	10.075	6	0	Median	7432099999.999999	3980099999.9999995	3451899999.9999995	1619	404	1525	3173;3174;3175;3176;3177;3178	7801;7802;7803;7804;7805;7806;7807;7808;7809;7810;7811;7812;7813;7814;7815;7816;7817;7818;7819;7820	7808		20	9606
AYTNFDAERDALNIETAIK	1	1	Unmodified	2154.0593	0.059312378	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	13	2.77						2		1	1					16	1	2	22.785	22.785	2;3	7.1913E-24	13033	DP690-6	220.97	220.97			0.81894	0.97864	11.895	21	0	Median	15543000000	8409499999.999999	7133699999.999999	1620	404	1526	3179;3180;3181;3182;3183;3184;3185;3186;3187;3188;3189;3190;3191;3192;3193;3194;3195;3196;3197;3198;3199;3200;3201	7821;7822;7823;7824;7825;7826;7827;7828;7829;7830;7831;7832;7833;7834;7835;7836;7837;7838;7839;7840;7841;7842;7843;7844;7845;7846;7847;7848;7849;7850;7851;7852;7853;7854;7855;7856;7857;7858;7859;7860;7861;7862;7863;7864;7865;7866;7867;7868;7869;7870;7871;7872;7873;7874;7875;7876;7877;7878;7879;7880;7881;7882;7883;7884;7885;7886;7887;7888;7889;7890	7882		70	9606
AYTNFDAERDALNIETAIKTK	2	1	Unmodified	2383.202	0.20195387	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	2	14	0														1			18.371	18.371	3	0.042033	13464	DP690-14	45.469	28.118			0.74285	0.8941	NaN	1	0	Median	27037000	17351000	9685800	1621	404	1527	3202	7891	7891		1	9606
AYVDDTPAEQMK	1	0	Oxidation (M)	1382.6024	0.60239596	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	1	0	2	0		1															11.779	11.779	2	0.0015687	3976	DP690-2	105.98	89.343			0.73842	0.74415	NaN	1	0	Median	11867000	6631100	5235700	1622	408	1528	3203	7892;7893;7894	7893	445	3	9606
AYVLLGDDSFLER	0	1	Unmodified	1496.7511	0.75110911	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	0	0	3	0			1														20.578	20.578	2	0.0046661	15770	DP690-3	119.22	75.266			NaN	NaN	NaN	0	0	Median	19612000	0	19612000	1623	2061	1529	3204	7895;7896	7895		2	9606
AYVPALQMAFK	1	0	Oxidation (M)	1253.6478	0.64783001	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									1	1							17.483	17.483	2	0.013201	13215	DP690-10	82.452	49.702			0.77857	0.90311	9.8215	2	0	Median	334780000	189100000	145670000	1624	1046	1530	3205;3206	7897;7898;7899;7900;7901;7902	7898	1587	6	9606
AYVPALQMAFK	1	0	Unmodified	1237.6529	0.65291539	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							19.25	19.25	2	0.0055253	13923	DP690-9	87.181	87.181			0.83477	1.0056	5.8858	2	0	Median	228300000	121940000	106350000	1625	1046	1530	3207;3208	7903;7904;7905;7906;7907;7908	7908		6	9606
AYVSTLMGVPGR	0	1	Oxidation (M)	1265.6438	0.64380726	80	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	1	0	13	0													1				14.916	14.916	2	0.032394	8625	DP690-13	71.614	50.642			1.1267	1.3705	NaN	1	0	Median	47349000	20628000	26721000	1626	80	1531	3209	7909	7909	83	1	9606
CAAAGSSSSGSAAAALDADCR	0	1	Unmodified	1954.8109	0.81090196	1647	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	0	13	0													1				13.349	13.349	2	1.2084E-14	6475	DP690-13	165.49	150.1			0.73634	0.90812	NaN	1	0	Median	20686000	11184000	9501600	1627	1647	1532	3210	7910;7911;7912;7913	7911		4	9606
CAGCTNPISGLGGTK	1	0	Unmodified	1491.681	0.68099741	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	10	4						1								1			14.44	14.44	2	7.1621E-16	8122	DP690-14	236.11	203.79			0.90351	1.0436	1.0331	2	0	Median	175650000	93543000	82107000	1628	1258	1533	3211;3212	7914;7915;7916;7917;7918;7919;7920	7918		7	9606
CAGNEDIITLR	0	1	Unmodified	1260.6132	0.61323542	472	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	9.67	3.77							2								1		15.913	15.913	2	0.00040681	10016	DP690-15	116.52	64.036			0.69431	0.80658	NaN	1	0	Median	30429000	13880000	16549000	1629	472	1534	3213;3214;3215	7921;7922;7923;7924;7925	7922		5	9606
CALGWDHQEK	1	0	Unmodified	1242.5452	0.54515585	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	11	0											1						12.017	12.017	3	0.016008	4914	DP690-11	65.278	44.44			0.99253	1.1887	NaN	1	0	Median	98266000	47303000	50964000	1630	1267	1535	3216	7926	7926		1	9606
CAPGVVGPAEADIDFDIIR	0	1	Unmodified	2013.983	0.98297631	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.5	0.5									1	1							21.012	21.012	2	1.5353E-22	18114	DP690-10	219.89	219.89			0.71475	0.87287	NaN	1	0	Median	159830000	94108000	65722000	1631	549	1536	3217;3218	7927;7928;7929;7930;7931;7932	7928		6	9606
CAPGVVGPAEADIDFDIIRNDNDTFTVK	1	1	Unmodified	3048.4499	0.44986507	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10	0.816									1	1	1						20.734	20.734	3	1.6156E-18	17791	DP690-10	177.32	149.15			0.65958	0.77474	NaN	1	0	Median	245040000	149570000	95467000	1632	549	1537	3219;3220;3221	7933;7934;7935;7936	7934		4	9606
CASQAGMTAYGTR	0	1	Unmodified	1372.5864	0.58636874	1330	Q15417	CNN3	Calponin-3	yes	yes	0	0	0	12	3.46						1								3			11.785	11.785	2	1.7226E-08	4686	DP690-14	203.02	151.68			0.91143	1.0452	13.087	2	0	Median	206800000	108790000	98016000	1633	1330	1538	3222;3223;3224;3225	7937;7938;7939;7940;7941;7942;7943;7944;7945;7946	7942		10	9606
CASQAGMTAYGTR	0	1	Oxidation (M)	1388.5813	0.58128336	1330	Q15417	CNN3	Calponin-3	yes	yes	0	1	0	14	0														1			11.784	11.784	2	0.0095706	4434	DP690-14	103.21	16.029			NaN	NaN	NaN	0	0	Median	12659000	12659000	0	1634	1330	1538	3226	7947;7948	7947	2071	2	9606
CASQSGMTAYGTR	0	1	Unmodified	1388.5813	0.58128336	1934	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	6	0						2											11.408	11.408	2	0.0035125	3925	DP690-6	143.96	16.195			NaN	NaN	NaN	0	0	Median	0	0	0	1635	1934	1539	3227;3228	7949;7950	7949		2	9606
CAVCLDTVHFGR	0	1	Unmodified	1433.6544	0.65438873	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	10	0										1							15.827	15.827	3	0.064737	10779	DP690-10	43.501	23.86			0.73337	0.91859	NaN	1	0	Median	43162000	28416000	14746000	1636	106	1540	3229	7951	7951		1	9606
CCFLCMVCR	0	1	Oxidation (M)	1320.4906	0.49055956	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	1	0	15.5	0.5															1	1	15.71	15.71	2	0.0060999	9470	DP690-16	105.12	100.15			0.88378	0.97336	14.434	2	0	Median	470560000	245090000	225470000	1637	1354	1541	3230;3231	7952;7953;7954;7955;7956;7957;7958	7956	2100	7	9606
CCFLCMVCR	0	1	Unmodified	1304.4956	0.49564494	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	0	15	0															1		18.075	18.075	2	0.00045086	12712	DP690-15	187.14	167.83			0.85949	0.96353	NaN	1	0	Median	68710000	34696000	34014000	1638	1354	1541	3232	7959;7960;7961;7962	7962		4	9606
CCLTYCFNKPEDK	2	0	Unmodified	1733.7211	0.72114766	1009	P62979;A0A2R8Y422	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	no	0	0	1	16	0																2	14.013	14.013	2;3	3.6742E-10	7230	DP690-16	247.96	247.96			0.88079	0.98785	5.3643	2	0	Median	221500000	118260000	103240000	1639	1009	1542	3233;3234	7963;7964;7965;7966;7967;7968;7969;7970	7967		8	9606
CCNICGTSENDDQLLFCDDCDR	0	1	Unmodified	2766.0084	0.0084338484	1789	Q92785	DPF2	Zinc finger protein ubi-d4	yes	yes	0	0	0	13	0													1				18.202	18.202	2	2.7892E-05	13070	DP690-13	148.57	130.66			NaN	NaN	NaN	0	0	Median	0	0	0	1640	1789	1543	3235	7971	7971		1	9606
CDDFVVNDTK	1	0	Unmodified	1211.5129	0.51285267	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	0	12	0												1					13.857	13.857	2	0.00044316	7362	DP690-12	120.31	87.891			0.91442	1.0903	NaN	1	0	Median	71767000	39198000	32569000	1641	2521	1544	3236	7972;7973;7974;7975	7973		4	9606
CDKEFMWALK	2	0	Acetyl (Protein N-term);Oxidation (M)	1384.6155	0.6155436	916	P58546	MTPN	Myotrophin	yes	yes	1	1	1	8	0								1									18.549	18.549	2	0.038372	12049	DP690-8	65.719	65.719			0.88952	1.0462	NaN	1	0	Median	4015900	2162900	1853100	1642	916	1545	3237	7976;7977	7977	1410	2	9606
CDMEVSCPDGYTCCR	0	1	Oxidation (M)	1924.6518	0.65182382	611	P28799	GRN	Granulins;Acrogranin;Paragranulin;Granulin-1;Granulin-2;Granulin-3;Granulin-4;Granulin-5;Granulin-6;Granulin-7	yes	yes	0	1	0	16	0																1	13.076	13.076	2	0.010687	6032	DP690-16	115.33	103.46			NaN	NaN	NaN	0	0	Median	0	0	0	1643	611	1546	3238	7978	7978	849	1	9606
CDNFTSSWR	0	1	Unmodified	1171.4717	0.47165656	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							15.261	15.261	2	0.00078396	8847	DP690-9	133.86	86.868			0.85228	1.0398	0.13677	2	0	Median	170160000	89933000	80229000	1644	1319	1547	3239;3240	7979;7980;7981;7982;7983;7984;7985	7983		7	9606
CDVDIRKDLYANTVLSGGTTMYPGIADR	1	2	Unmodified	3100.4958	0.4957694	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	2	14	0														1			19.228	19.228	4	1.5137E-05	14616	DP690-14	117.96	100.43			0.67635	0.77017	NaN	1	0	Median	130260000	75946000	54317000	1645	926;1023	1548	3241	7986;7987	7987		2	9606
CEFFNAGGSVK	1	0	Unmodified	1214.539	0.53900784	666	P35520	CBS	Cystathionine beta-synthase	yes	yes	0	0	0	4	0				1													15.159	15.159	2	0.00013398	8779	DP690-4	140.45	112.23			0.87173	0.93679	NaN	1	0	Median	38811000	20562000	18249000	1646	666	1549	3242	7988;7989;7990;7991;7992	7992		5	9606
CEFQDAYVLLSEK	1	0	Unmodified	1600.7443	0.74430917	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	8	4				1								1					19.984	19.984	2	5.4355E-05	15816	DP690-12	175.74	160.73			1.0025	1.1508	24.351	2	0	Median	37961000	19650000	18311000	1647	461	1550	3243;3244	7993;7994;7995;7996;7997;7998;7999	7995		7	9606
CEGINISGNFYR	0	1	Unmodified	1428.6456	0.64559818	705	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	0	15	0															1		17.16	17.16	2	0.00031511	11632	DP690-15	118.03	100.52			0.90864	1.052	NaN	1	0	Median	15528000	8134400	7394000	1648	705	1551	3245	8000;8001	8001		2	9606
CELENCQPFVVETLHGK	1	0	Unmodified	2058.9503	0.95029598	1121	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	4	0				1													16.735	16.735	3	0.0001464	10825	DP690-4	106.19	84.421			0.76759	0.84221	NaN	1	0	Median	15037000	8040700	6995800	1649	1121	1552	3246	8002;8003;8004	8002		3	9606
CELLYEGPPDDEAAMGIK	1	0	Oxidation (M)	2022.8914	0.89144369	483	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	6	3.56			1	1							1						17.424	17.424	2	9.942E-11	11810	DP690-3	164.13	150.17			0.93542	1.0028	11.563	3	0	Median	91048000	45957000	45090000	1650	483	1553	3247;3248;3249	8005;8006;8007;8008;8009;8010;8011;8012;8013;8014;8015;8016	8010	597	12	9606
CELLYEGPPDDEAAMGIK	1	0	Unmodified	2006.8965	0.89652907	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	8.33	3.77			1								2						18.775	18.775	2	4.3284E-11	13602	DP690-3	168.31	148.18			0.85773	0.91002	NaN	1	0	Median	10947000	5847500	5099100	1651	483	1553	3250;3251;3252	8017;8018;8019;8020;8021;8022;8023	8021		7	9606
CENVQPSGSFK	1	0	Unmodified	1251.5554	0.55538619	1858	Q96GA7	SDSL	Serine dehydratase-like	yes	yes	0	0	0	6	0						3											11.518	11.518	2	0.0034335	4013	DP690-6	128.27	82.589			NaN	NaN	NaN	0	0	Median	1586200	0	1586200	1652	1858	1554	3253;3254;3255	8024;8025;8026;8027	8024		4	9606
CEPIIMTVPR	0	1	Oxidation (M)	1230.6101	0.6100643	2395	Q9ULV4;Q6QEF8	CORO1C;CORO6	Coronin-1C;Coronin-6	yes	no	0	1	0	13	0													1				14.627	14.627	2	0.025401	8223	DP690-13	76.221	50.662			0.56912	0.69711	NaN	1	0	Median	32428000	19179000	13249000	1653	2395	1555	3256	8028	8028	2825	1	9606
CEYPAACNALETLLIHR	0	1	Unmodified	2029.9714	0.97136577	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						20.327	20.327	3	8.1687E-08	17053	DP690-11	154.46	154.46			0.88187	1.0617	NaN	1	0	Median	77509000	43450000	34060000	1654	891	1556	3257	8029;8030;8031;8032	8032		4	9606
CFIVGADNVGSK	1	0	Unmodified	1265.6074	0.60742176	385	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	10	4						1								1			15.097	15.097	2	0.00026198	8987	DP690-14	145.25	107.69			0.94008	1.085	1.1096	2	0	Median	212670000	96984000	115680000	1655	385	1557	3258;3259	8033;8034;8035;8036;8037	8034		5	9606
CFNTLTNSFQPSLLGR	0	1	Unmodified	1853.9094	0.90941744	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	1.29									1	1	2	1	1				21.207	21.207	2	2.6821E-27	16569	DP690-11	285.83	257.96			0.80036	0.91282	37.284	3	0	Median	313460000	157380000	156080000	1656	897	1558	3260;3261;3262;3263;3264;3265	8038;8039;8040;8041;8042;8043;8044;8045;8046;8047;8048;8049;8050;8051;8052	8043		15	9606
CFQPPIHQSLASS	0	0	Unmodified	1470.6925	0.69254837	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	7	4			1								1						15.38	15.38	2	0.0063126	9141	DP690-3	108.43	70.128			NaN	NaN	NaN	0	0	Median	0	0	0	1657	1531	1559	3266;3267	8053;8054;8055	8054		3	9606
CFSVLGFCK	1	0	Unmodified	1116.5096	0.50962197	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	3	0			1														18.601	18.601	2	0.014306	13366	DP690-3	85.212	66.108			3.6596	3.8728	NaN	1	0	Median	9736200	2232200	7503900	1658	480	1560	3268	8056	8056		1	9606
CGAALAGHQLIR	0	1	Unmodified	1265.6663	0.66627404	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.33	0.471									4	2							12.778	12.778	2;3	4.2966E-05	5598	DP690-9	160.53	77.45			0.83423	0.98881	10.973	4	0	Median	511860000	275760000	236100000	1659	1046	1561	3269;3270;3271;3272;3273;3274	8057;8058;8059;8060;8061;8062;8063;8064;8065;8066;8067;8068;8069;8070;8071;8072	8063		16	9606
CGDLEEELKNVTNNLK	2	0	Unmodified	1874.9044	0.90439164	1028	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	1	11	4							1								1		19.48	19.48	3	0.00040931	14564	DP690-15	93.716	62.397			0.82384	0.90864	16.779	2	0	Median	11947000	6467400	5480000	1660	1028	1562	3275;3276	8073;8074;8075;8076	8073		4	9606
CGEEIAVQFVDMVK	1	0	Oxidation (M)	1639.7586	0.75857903	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	1	0	4	0				1													19.646	19.646	2	0.018146	14285	DP690-4	99.539	67.285			NaN	NaN	NaN	0	0	Median	0	0	0	1661	167	1563	3277	8077	8077	185	1	9606
CGESMLCVVPDISAFR	0	1	Oxidation (M)	1855.8267	0.82667537	1125	Q06330	RBPJ	Recombining binding protein suppressor of hairless	yes	yes	0	1	0	12	0												1					20.346	20.346	2	0.00032701	16288	DP690-12	117.2	88.394			0.68478	0.83359	NaN	1	0	Median	11178000	6279900	4897800	1662	1125	1564	3278	8078;8079;8080;8081;8082	8078	1747	5	9606
CGFLPGNEK	1	0	Unmodified	1020.4699	0.46986564	2384	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	7.5	0.5							1	1									13.942	13.942	2	0.0032093	7037	DP690-7	107.01	80.211			0.79696	0.88587	0.3135	2	0	Median	87440000	43791000	43648000	1663	2384	1565	3279;3280	8083;8084;8085;8086	8085		4	9606
CGHGIVGTIVK	1	0	Unmodified	1139.6121	0.61211321	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	0	14	0														2			12.639	12.639	2;3	0.00095554	5621	DP690-14	81.525	51.207			0.68801	0.82704	17.714	2	0	Median	78678000	46756000	31922000	1664	820	1566	3281;3282	8087;8088;8089;8090;8091;8092;8093;8094	8091		8	9606
CGIGQEEMEASSSQDQSK	1	0	Oxidation (M)	1985.7942	0.79424884	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	1	0	10	0										2							11.936	11.936	2	1.5761999999999999E-50	5081	DP690-10	276.12	240.58			0.80515	0.98149	NaN	1	0	Median	22405000	10906000	11499000	1665	2065	1567	3283;3284	8095;8096;8097;8098	8098	2587	4	9606
CGIGQEEMEASSSQDQSK	1	0	Unmodified	1969.7993	0.79933422	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										2							13.244	13.244	2	5.582699999999999E-79	6970	DP690-10	281.32	254.97			NaN	NaN	NaN	0	0	Median	10186000	10186000	0	1666	2065	1567	3285;3286	8099;8100;8101	8099		3	9606
CGNQAAIMELDDTLK	1	0	Oxidation (M)	1693.7651	0.76512097	987	P67775;P62714	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	yes	no	0	1	0	6	0						1											17.764	17.764	2	3.4587E-05	11513	DP690-6	144.47	106.07			2.0472	2.3474	NaN	1	0	Median	10292000	2618700	7673300	1667	987	1568	3287	8102;8103;8104	8104	1505	3	9606
CGPTHQGSEDPSMLSQAQSATEVEER	0	1	Oxidation (M)	2846.2083	0.20831417	2022	Q9BVS5	TRMT61B	tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial	yes	yes	0	1	0	12	0												1					13.474	13.474	3	0.00061604	6865	DP690-12	95.052	70.776			NaN	NaN	NaN	0	0	Median	7635700	7635700	0	1668	2022	1569	3288	8105	8105	2554	1	9606
CGSGPVHISGQHLVAVEEDAESEDEEEEDVK	1	0	Unmodified	3379.4634	0.46340246	397	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	14	0														1			16.045	16.045	4	1.5458E-06	10326	DP690-14	96.505	83.867			0.75233	0.90561	NaN	1	0	Median	107310000	50996000	56312000	1669	397	1570	3289	8106;8107;8108	8106		3	9606
CGSRPPPGFPGLETMLPLLLTAVSEGR	0	2	Oxidation (M)	2867.4674	0.46736981	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	1	2	0		1															22.969	22.969	3	6.0534E-05	16575	DP690-2	89.829	77.381			0.85665	0.85561	NaN	1	0	Median	2671100	1353000	1318100	1670	602	1571	3290	8109;8110;8111;8112;8113;8114;8115;8116	8110	808	8	9606
CGVCEVCQQPECGK	1	0	Unmodified	1709.663	0.66298086	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							11.881	11.881	2	3.8301E-15	4979	DP690-10	236.22	225.99			0.77832	0.95389	NaN	1	0	Median	30519000	15030000	15488000	1671	591	1572	3291	8117;8118;8119;8120;8121;8122	8118		6	9606
CGVTSVPDIR	0	1	Unmodified	1102.5441	0.54409322	2087	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	13	0													1				14.541	14.541	2	0.00044842	8109	DP690-13	120.15	79.886			0.91481	1.0909	NaN	1	0	Median	101740000	48359000	53379000	1672	2087	1573	3292	8123;8124	8123		2	9606
CHFDYNPYNDNLIPCK	1	0	Unmodified	2068.8771	0.87713103	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	12	0												1					16.962	16.962	3	0.045391	11805	DP690-12	45.864	38.914			0.69358	0.8335	NaN	1	0	Median	26096000	15101000	10995000	1673	2280	1574	3293	8125	8125		1	9606
CHIDLSGIVEEVK	1	0	Unmodified	1497.7497	0.7497289	52	Q6KB66;CON__Q6KB66-1;CON__Q0VBK2	KRT80	Keratin, type II cytoskeletal 80	yes	no	0	0	0	13	0													1				18.258	18.258	3	0.0019311	13223	DP690-13	82.543	67.206		+	0.58221	0.67117	NaN	1	0	Median	14459000	8349500	6109200	1674	52	1575	3294	8126;8127	8126		2	9606
CIECVQPQSLQFIIDAFK	1	0	Unmodified	2195.0755	0.075496489	1283	Q14671;Q8TB72	PUM1;PUM2	Pumilio homolog 1;Pumilio homolog 2	yes	no	0	0	0	11	0											1						24.395	24.395	2	0.011005	22160	DP690-11	111.79	74.18			NaN	NaN	NaN	0	0	Median	0	0	0	1675	1283	1576	3295	8128	8128		1	9606
CILPFDKETGFHR	1	1	Unmodified	1618.7926	0.79259677	2075	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	yes	yes	0	0	1	16	0																1	15.395	15.395	4	0.044215	9099	DP690-16	48.044	48.044			0.70934	0.79568	NaN	1	0	Median	20050000	10806000	9244700	1676	2075	1577	3296	8129	8129		1	9606
CILVASPGFVR	0	1	Unmodified	1217.6591	0.6590634	1988	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	8	5			1										1				17.068	17.068	2;3	0.026305	12099	DP690-13	80.455	47.642			0.93099	1.09	29.372	2	0	Median	81081000	41760000	39321000	1677	1988	1578	3297;3298	8130;8131	8130		2	9606
CIPALDSLTPANEDQK	1	0	Unmodified	1770.8458	0.84581413	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	8	4				1								1					17.764	17.764	2	7.0381E-09	12053	DP690-4	185.99	165.22			0.79846	0.90709	28.212	2	0	Median	36850000	20659000	16191000	1678	461	1579	3299;3300	8132;8133;8134;8135;8136;8137	8137		6	9606
CISEVQANNVVLGQYVGNPDGEGEATK	1	0	Unmodified	2847.3345	0.33450096	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	4	0				1													18.22	18.22	2	1.4843000000000002E-62	12698	DP690-4	292.35	292.35			0.85406	0.93305	NaN	1	0	Median	11718000	6361400	5356400	1679	469	1580	3301	8138;8139;8140;8141;8142;8143	8143		6	9606
CITDPQTGLCLLPLK	1	0	Unmodified	1727.895	0.89501293	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.3	1.25									1	1		1					20.504	20.504	2	2.4931E-05	17450	DP690-10	155.48	120.71			0.80111	0.9795	41.729	3	0	Median	37426000	19883000	17543000	1680	1319	1581	3302;3303;3304	8144;8145;8146;8147;8148;8149	8144		6	9606
CITDTLQELVNQSK	1	0	Unmodified	1647.8138	0.81378572	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10.6	0.49										2	3						21.225	21.225	2	3.75E-61	18181	DP690-10	371.4	307.98			0.83807	0.97042	NaN	1	0	Median	359720000	185130000	174590000	1681	272	1582	3305;3306;3307;3308;3309	8150;8151;8152;8153;8154;8155;8156;8157;8158	8150		9	9606
CIVHSPTNPGFMTCSDDFR	0	1	Oxidation (M)	2255.9398	0.93980764	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	1	0	13	0													1				15.265	15.265	3	4.5424E-10	9116	DP690-13	152.94	122.08			0.66569	0.79827	NaN	1	0	Median	91483000	54581000	36901000	1682	1114	1583	3310	8159;8160;8161;8162	8160	1726	4	9606
CIVHSPTNPGFMTCSDDFR	0	1	Unmodified	2239.9449	0.94489302	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	13	0													1				16.525	16.525	3	3.8337E-10	10855	DP690-13	152.68	139.09			0.7573	0.91669	NaN	1	0	Median	63121000	40969000	22152000	1683	1114	1583	3311	8163;8164	8164		2	9606
CKAEHDQLLLNYAK	2	0	Unmodified	1701.8508	0.85083993	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	12	0												1					13.402	13.402	3	9.1252E-10	6744	DP690-12	206.46	188.45			0.7988	0.88924	NaN	1	0	Median	215730000	124550000	91175000	1684	544	1584	3312	8165;8166;8167;8168	8166		4	9606
CKELGITALHIK	2	0	Unmodified	1381.7752	0.77515579	971	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	16	0																1	13.944	13.944	3	6.1077E-05	7175	DP690-16	118.87	102.64			0.92001	1.029	NaN	1	0	Median	73468000	40579000	32890000	1685	971	1585	3313	8169;8170;8171;8172	8170		4	9606
CKIPALDLLIK	2	0	Unmodified	1282.7683	0.7682795	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.75	0.433									1	3							19.071	19.071	3	5.3736E-05	13754	DP690-9	116.03	116.03			0.7828	0.95443	4.3962	2	0	Median	59893000	30103000	29789000	1686	1046	1586	3314;3315;3316;3317	8173;8174;8175;8176;8177;8178;8179;8180;8181	8180		9	9606
CLANLRPLLDSGTMGTK	1	1	Oxidation (M)	1861.939	0.93900301	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	1	1	3	0			1														16.449	16.449	3	0.0083839	10559	DP690-3	60.246	36.365			0.71643	0.79457	NaN	1	0	Median	36513000	20286000	16228000	1687	5	1587	3318	8182;8183	8182	5	2	9606
CLEPEGAAELR	0	1	Unmodified	1243.5867	0.58668632	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	4	0				1													14.317	14.317	2	0.00012562	7598	DP690-4	135.71	111.68			0.69781	0.80543	NaN	1	0	Median	18099000	10828000	7271300	1688	2116	1588	3319	8184;8185	8184		2	9606
CLFQSPLFAK	1	0	Unmodified	1209.6216	0.62161526	1585	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	4	0				1													19.434	19.434	2	0.00074084	13994	DP690-4	111.74	90.367			0.92647	1.0094	NaN	1	0	Median	10643000	5877700	4765700	1689	1585	1589	3320	8186;8187	8186		2	9606
CLLASTYLAR	0	1	Unmodified	1166.6118	0.61177885	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															17.091	17.091	2	0.0047072	10283	DP690-2	91.069	65.494			0.95561	0.99931	NaN	1	0	Median	8968700	5036800	3932000	1690	2418	1590	3321	8188	8188		1	9606
CLMDQATDPNILGR	0	1	Oxidation (M)	1618.7443	0.74432595	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									1	1							15.944	15.944	2	3.8232E-09	9675	DP690-9	206.36	170.4			1.0041	1.2122	41.445	2	0	Median	140260000	67672000	72592000	1691	1046	1591	3322;3323	8189;8190;8191;8192;8193;8194;8195;8196;8197;8198;8199	8196	1588	11	9606
CLMDQATDPNILGR	0	1	Unmodified	1602.7494	0.74941132	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							17.923	17.923	2	7.2597E-15	12235	DP690-9	229.68	193.26			0.77472	0.95269	2.4898	2	0	Median	116800000	67536000	49269000	1692	1046	1591	3324;3325	8200;8201;8202;8203;8204	8204		5	9606
CLNNLAASQLK	1	0	Unmodified	1230.6391	0.63905624	1271	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	13	0													1				14.52	14.52	2	0.00035955	8069	DP690-13	118.03	93.258			0.61603	0.7119	NaN	1	0	Median	62435000	42328000	20108000	1693	1271	1592	3326	8205;8206;8207;8208	8206		4	9606
CLSEQSVAISR	0	1	Unmodified	1248.6132	0.61323542	715	P41134	ID1	DNA-binding protein inhibitor ID-1	yes	yes	0	0	0	16	0																1	13.556	13.556	2	0.008752	6687	DP690-16	80.916	49.422			0.71694	0.83644	NaN	1	0	Median	7943800	4559500	3384300	1694	715	1593	3327	8209	8209		1	9606
CLSLSAGQTTLSR	0	1	Unmodified	1392.7031	0.70311306	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	4	0				2													15.265	15.265	2	0.0045844	8891	DP690-4	117.02	66.218			NaN	NaN	NaN	0	0	Median	0	0	0	1695	2000	1594	3328;3329	8210;8211	8210		2	9606
CLTLTPRPATEAELLTCHSAEYVGHLR	0	2	Unmodified	3094.5328	0.53282361	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	1	3	0			1														17.749	17.749	5	0.00027135	12302	DP690-3	89.979	66.463			NaN	NaN	NaN	0	0	Median	31067000	0	31067000	1696	2316	1595	3330	8212;8213	8212		2	9606
CLYASVLTAQPR	0	1	Unmodified	1377.7075	0.70747015	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	6	3.56			1	1							1						16.867	16.867	2	1.6132E-05	11092	DP690-3	191.45	172.19			1.0129	1.171	15.768	3	0	Median	148550000	70959000	77596000	1697	483	1596	3331;3332;3333	8214;8215;8216;8217;8218;8219;8220;8221;8222	8219		9	9606
CMPTFQFFK	1	0	Oxidation (M)	1220.5358	0.53583672	459	P10599	TXN	Thioredoxin	yes	yes	0	1	0	12	4								1								1	18.498	18.498	2	0.020485	12814	DP690-16	87.181	69.196			0.84776	0.91431	6.4281	2	0	Median	170640000	93239000	77399000	1698	459	1597	3334;3335	8223;8224;8225;8226;8227;8228;8229	8224	526	7	9606
CMPTFQFFK	1	0	Unmodified	1204.5409	0.5409221	459	P10599	TXN	Thioredoxin	yes	yes	0	0	0	8	0								1									20.081	20.081	2	0.02825	13682	DP690-8	74.255	59.39			0.92877	1.0705	NaN	1	0	Median	5850400	2974400	2876100	1699	459	1597	3336	8230;8231	8230		2	9606
CMQLTDFILK	1	0	Oxidation (M)	1283.6254	0.62538001	825	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	1	0	15	0															1		19.309	19.309	2	0.00014884	14276	DP690-15	155.58	120.15			0.93819	1.1005	NaN	1	0	Median	34756000	17658000	17098000	1700	825	1598	3337	8232;8233;8234;8235	8233	1239	4	9606
CNEQPNRVEIYEK	1	1	Unmodified	1677.7781	0.77806891	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	1	3	0			1														11.882	11.882	3	0.00056265	4539	DP690-3	98.407	69.618			0.72995	0.80957	NaN	1	0	Median	22147000	13883000	8263500	1701	1531;1849	1599	3338	8236;8237	8236		2	9606
CNGVLEGIR	0	1	Unmodified	1016.5073	0.50731378	668;669;1543;2378	P35579;A7E2Y1;Q7Z406;P35580;Q9UKX3;Q9Y623;P12882;P11055;Q9UKX2	MYH9;MYH7B;MYH14;MYH10;MYH13;MYH4;MYH1;MYH3;MYH2	Myosin-9;Myosin-7B;Myosin-14;Myosin-10;Myosin-13;Myosin-4;Myosin-1;Myosin-3;Myosin-2	no	no	0	0	0	2	0		1															14.421	14.421	2	0.001952	7042	DP690-2	115.49	76.702			1.1041	1.1522	NaN	1	0	Median	17367000	7781000	9586400	1702	668;1543;669;2378	1600	3339	8238;8239;8240	8239		3	9606
CNIQYPATEHR	0	1	Unmodified	1387.6303	0.63028247	1400	Q53EZ4	CEP55	Centrosomal protein of 55 kDa	yes	yes	0	0	0	12	0												1					10.978	10.978	3	0.0021397	3505	DP690-12	86.114	67.015			0.69693	0.82966	NaN	1	0	Median	34136000	18837000	15299000	1703	1400	1601	3340	8241;8242	8242		2	9606
CNTQQPGCENVCYDK	1	0	Unmodified	1871.7237	0.72366686	511	P17302	GJA1	Gap junction alpha-1 protein	yes	yes	0	0	0	14	0														1			11.746	11.746	2	2.0453E-25	4419	DP690-14	215.72	208.38			NaN	NaN	NaN	0	0	Median	4034200	4034200	0	1704	511	1602	3341	8243;8244	8243		2	9606
CPDYYENNVHK	1	0	Unmodified	1437.5983	0.59831364	2146	Q9H9F9	ACTR5	Actin-related protein 5	yes	yes	0	0	0	12	0												1					10.816	10.816	3	0.049416	3316	DP690-12	49.28	29.753			0.72947	0.87671	NaN	1	0	Median	24471000	12688000	11784000	1705	2146	1603	3342	8245	8245		1	9606
CPEALFQPSFLGMESCGIHETTFNSIMK	1	0	2 Oxidation (M)	3262.4443	0.44432746	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	2	0	13	2.76						1			1				1	6	1	1	22.804	22.804	3	9.3553E-06	15312	DP690-14	109.28	90.043			0.71565	0.83886	14.889	9	0	Median	3164299999.9999995	1691299999.9999998	1472999999.9999998	1706	926;1023	1604	3343;3344;3345;3346;3347;3348;3349;3350;3351;3352;3353	8246;8247;8248;8249;8250;8251;8252;8253;8254;8255;8256;8257;8258;8259;8260;8261;8262;8263;8264;8265;8266;8267;8268;8269;8270;8271;8272;8273;8274;8275	8249	1420;1421	30	9606
CPEALFQPSFLGMESCGIHETTFNSIMK	1	0	Oxidation (M)	3246.4494	0.44941284	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	14.1	0.235														16	1		27.092	27.092	3	3.6433E-05	21038	DP690-14	76.471	67.553			0.69486	0.80765	8.4657	11	0	Median	4030999999.9999995	2228600000	1802499999.9999998	1707	926;1023	1604	3354;3355;3356;3357;3358;3359;3360;3361;3362;3363;3364;3365;3366;3367;3368;3369;3370	8276;8277;8278;8279;8280;8281;8282;8283;8284;8285;8286;8287;8288;8289;8290;8291;8292;8293;8294;8295;8296;8297;8298;8299;8300;8301;8302;8303;8304;8305;8306	8279	1420;1421	28	9606
CPEALFQPSFLGMESCGIHETTFNSIMK	1	0	Unmodified	3230.4545	0.45449822	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	14.2	0.433														3	1		23.697	23.697	3	2.3619E-08	17708	DP690-14	137.58	127.43			0.7166	0.80907	7.1896	2	0	Median	535940000	301220000	234730000	1708	926;1023	1604	3371;3372;3373;3374	8307;8308;8309;8310;8311;8312;8313;8314;8315;8316;8317;8318;8319;8320;8321;8322	8308		16	9606
CPENAFFLDHVR	0	1	Unmodified	1503.6929	0.69288272	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						16.408	16.408	3	3.3524E-05	11402	DP690-11	174.21	147.46			0.8165	0.97036	NaN	1	0	Median	125820000	68340000	57482000	1709	65	1605	3375	8323;8324;8325;8326	8324		4	9606
CPFTGNVSIR	0	1	Unmodified	1149.5601	0.56007764	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	13	3.56								1							1	1	14.786	14.786	2	8.3057E-05	8456	DP690-15	162.49	119.58			0.81392	0.8298	11.649	3	0	Median	1095200000	595050000	500150000	1710	976	1606	3376;3377;3378	8327;8328;8329;8330;8331;8332;8333;8334;8335;8336;8337;8338;8339;8340	8330		14	9606
CPLDPYFIMPDK	1	0	Oxidation (M)	1510.6836	0.68362317	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	0	11	0											1						18.544	18.544	2	0.0012009	14624	DP690-11	108.31	61.358			0.72091	0.87848	NaN	1	0	Median	33243000	19720000	13523000	1711	652	1607	3379	8341;8342	8342	910	2	9606
CPLDPYFIMPDK	1	0	Unmodified	1494.6887	0.68870855	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	7	4			1								1						20.098	20.098	2	3.6694E-05	16756	DP690-11	147.3	107.45			0.65372	0.76973	NaN	1	0	Median	126870000	79771000	47097000	1712	652	1607	3380;3381	8343;8344;8345;8346;8347	8344		5	9606
CPLLYQWHR	0	1	Unmodified	1271.6233	0.62334659	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	0	8	3.56					1	1							1				15.675	15.675	3	0.0005513	8779	DP690-5	119.17	94.882			0.7579	0.78048	21.707	3	0	Median	236050000	133140000	102910000	1713	2208	1608	3382;3383;3384	8348;8349;8350;8351;8352;8353;8354	8352		7	9606
CPLSGACYSPEFK	1	0	Unmodified	1514.6534	0.65338567	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														15.799	15.799	2	6.9134E-05	9737	DP690-3	155.26	111.84			1.7937	1.9292	NaN	1	0	Median	18821000	6881200	11940000	1714	878	1609	3385	8355;8356	8356		2	9606
CPPGVVPACHNSK	1	0	Unmodified	1421.6544	0.65438873	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															10.326	10.326	3	4.3305E-05	2334	DP690-2	122.46	101.6			0.63784	0.65039	NaN	1	0	Median	95231000	56585000	38646000	1715	789	1610	3386	8357;8358;8359;8360	8359		4	9606
CPVTVCGDVHGQFHDLMELFR	0	1	Oxidation (M)	2532.1348	0.13481906	987	P67775;P62714	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	yes	no	0	1	0	6	0						1											19.136	19.136	4	0.0044673	13138	DP690-6	57.366	57.366			1.6531	1.8946	NaN	1	0	Median	6721400	2498700	4222700	1716	987	1611	3387	8361;8362	8362	1506	2	9606
CQCSDSQMYEIFSIIR	0	1	Oxidation (M)	2051.8751	0.87508212	104	O14531	DPYSL4	Dihydropyrimidinase-related protein 4	yes	yes	0	1	0	4	0				1													20.712	20.712	2	0.046218	15538	DP690-4	83.081	64.023			NaN	NaN	NaN	0	0	Median	580320	580320	0	1717	104	1612	3388	8363;8364	8363		2	9606
CQDVSAGSLQELALLTGIISK	1	0	Unmodified	2202.1566	0.15658358	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										1							24.562	24.562	2	0.045016	22593	DP690-10	84.94	33.215			NaN	NaN	NaN	0	0	Median	0	0	0	1718	1783	1613	3389	8365	8365		1	9606
CQLEINFNTLQTK	1	0	Unmodified	1607.7977	0.79774172	476;186	P12814;P35609;Q08043;O43707	ACTN1;ACTN2;ACTN3;ACTN4	Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-4	no	no	0	0	0	7	4			1								1						18.55	18.55	2	1.0366E-10	14539	DP690-11	220.82	220.82			1.2164	1.3846	52.076	2	0	Median	73592000	36768000	36824000	1719	476;186	1614	3390;3391	8366;8367;8368;8369;8370	8366		5	9606
CQLLDDLTTSEMEQLR	0	1	Oxidation (M)	1966.8976	0.8975917	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	1	0	2	0		1															19.566	19.566	2	1.1064E-06	13055	DP690-2	146.79	120.08			0.75189	0.76977	NaN	1	0	Median	1850800	1039900	810910	1720	2418	1615	3392	8371;8372;8373	8371	2839	3	9606
CQLLFALK	1	0	Unmodified	991.55247	0.55247306	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	0	15	0															2		18.643	18.643	2	3.1943E-06	13495	DP690-15	162.51	117.18			NaN	NaN	NaN	0	0	Median	31623000	31623000	0	1721	1983	1616	3393;3394	8374;8375;8376	8375		3	9606
CQPVFSFGNSEQTKDENSSK	2	0	Unmodified	2288.0015	0.0015395026	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	1	10	0										1							14.528	14.528	3	0.00063348	8837	DP690-10	84.107	70.919			0.71627	0.90308	NaN	1	0	Median	41445000	24121000	17324000	1722	807	1617	3395	8377	8377		1	9606
CQQEGQELLR	0	1	Unmodified	1259.5928	0.59283433	2101	Q9H2D6	TRIOBP	TRIO and F-actin-binding protein	yes	yes	0	0	0	12	0												1					12.965	12.965	2	9.1261E-05	6135	DP690-12	153.08	72.917			0.88305	1.0556	NaN	1	0	Median	28766000	14525000	14241000	1723	2101	1618	3396	8378;8379	8378		2	9606
CQQLQQEYSR	0	1	Unmodified	1338.5986	0.59864799	1883	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	0	12	0												1					11.432	11.432	2	2.3779E-05	4054	DP690-12	189.38	142.56			0.77212	0.91596	NaN	1	0	Median	39449000	22428000	17021000	1724	1883	1619	3397	8380;8381;8382;8383;8384	8382		5	9606
CQSLTEDLEFR	0	1	Unmodified	1396.6293	0.62927941	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					17.901	17.901	2	8.8894E-05	13017	DP690-12	153.97	96.01			0.81934	0.9717	NaN	1	0	Median	46966000	26522000	20443000	1725	544	1620	3398	8385	8385		1	9606
CQSLTEDLEFRK	1	1	Unmodified	1524.7242	0.72424243	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	12	0												1					15.353	15.353	3	3.5488E-05	9503	DP690-12	147.26	112.2			0.61232	0.69983	NaN	1	0	Median	137580000	84546000	53037000	1726	544	1621	3399	8386;8387	8387		2	9606
CQTGCWSPDGSR	0	1	Unmodified	1409.5452	0.54523221	2199	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	12	0												1					12.683	12.683	2	0.00095662	5660	DP690-12	105.86	89.192			0.97945	1.175	NaN	1	0	Median	21279000	10942000	10338000	1727	2199	1622	3400	8388	8388		1	9606
CQVFEETQIGGER	0	1	Unmodified	1551.6988	0.69875596	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	8	4				1								1					15.189	15.189	2	9.9473E-07	9271	DP690-12	159.09	90.46			1.506	1.7225	NaN	1	0	Median	43347000	30778000	12569000	1728	1959	1623	3401;3402	8389;8390;8391;8392;8393;8394;8395;8396	8389		8	9606
CRPDQLTGLSLLPLSEK	1	1	Unmodified	1926.0244	0.024447197	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.33	0.471									2	1							19.252	19.252	2;3	0.00034154	13994	DP690-9	94.325	74.656			0.78851	0.91452	NaN	1	0	Median	47349000	26689000	20660000	1729	1319	1624	3403;3404;3405	8397;8398;8399;8400	8398		4	9606
CSALATQYMHCVNHAK	1	0	Oxidation (M)	1905.8284	0.8284067	2250	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	1	0	15	0															1		10.841	10.841	3	9.2671E-05	3342	DP690-15	115.83	107.64			0.89104	1.0516	NaN	1	0	Median	23984000	12357000	11627000	1730	2250	1625	3406	8401;8402;8403;8404;8405;8406	8403	2717	6	9606
CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK	1	0	Unmodified	3944.8639	0.86393039	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	10	4						2								2			18.157	18.157	4;5	1.8217E-13	13118	DP690-14	121.21	112.21			0.66118	0.69545	5.9243	4	0	Linear	1211900000	672190000	539730000	1731	1325	1626	3407;3408;3409;3410	8407;8408;8409;8410;8411;8412;8413;8414;8415	8407		9	9606
CSDNTEVEVSNLENK	1	0	Unmodified	1736.7523	0.75230767	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10	0										2							14.676	14.676	2	1.3309E-25	9077	DP690-10	219.92	179.98			NaN	NaN	NaN	0	0	Median	55715000	32665000	23050000	1732	2190	1627	3411;3412	8416;8417;8418;8419	8418		4	9606
CSDNTEVEVSNLENKQPVESTSAK	2	0	Unmodified	2664.2185	0.21846815	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	10	0										1							14.431	14.431	3	5.5744E-05	8724	DP690-10	121.48	121.48			0.8325	0.97677	NaN	1	0	Median	180270000	106670000	73604000	1733	2190	1628	3413	8420;8421	8420		2	9606
CSEGSFLLTTFPR	0	1	Unmodified	1513.7235	0.72351415	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	12	0												1					19.945	19.945	2	0.0030227	15768	DP690-12	123.62	99.109			NaN	NaN	NaN	0	0	Median	0	0	0	1734	1322	1629	3414	8422	8422		1	9606
CSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEK	1	1	Oxidation (M)	3651.696	0.69604493	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	1	1	12	0												1					20.564	20.564	3	1.2649E-07	16716	DP690-12	83.318	68.388			0.7229	0.89678	NaN	1	0	Median	11854000	7120400	4733200	1735	1322	1630	3415	8423;8424	8424	2040	2	9606
CSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK	1	1	Unmodified	3595.7967	0.79674526	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	11	0											1						22.176	22.176	3	0.003045	19547	DP690-11	50.036	33.635			1.0027	1.193	NaN	1	0	Median	12273000	6645300	5627300	1736	566	1631	3416	8425;8426	8425		2	9606
CSGPGLGAGVR	0	1	Unmodified	1029.5026	0.50256276	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	2	0		1															11.794	11.794	2	0.00013733	3949	DP690-2	125.16	107.25			1.1879	1.2403	NaN	1	0	Median	14993000	6601400	8391400	1737	1270	1632	3417	8427;8428;8429;8430	8430		4	9606
CSGPGLSPGMVR	0	1	Unmodified	1216.5693	0.56926211	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.5	0.5									1	1							13.933	13.933	2	5.0637E-05	7905	DP690-10	140.11	110.35			0.80038	0.93854	15.624	2	0	Median	628870000	358450000	270420000	1738	549	1633	3418;3419	8431;8432;8433;8434;8435;8436	8431		6	9606
CSGPGLSPGMVR	0	1	Oxidation (M)	1232.5642	0.56417674	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	5.5	3.5		1							1								12.424	12.424	2	0.049495	4563	DP690-2	67.704	38.977			0.76806	0.87587	3.0829	2	0	Median	20614000	11692000	8921800	1739	549	1633	3420;3421	8437;8438;8439;8440;8441;8442;8443	8437		7	9606
CSLGLFPPPPPR	0	1	Acetyl (Protein N-term)	1378.7067	0.70674187	2199	Q9NRG9	AAAS	Aladin	yes	yes	1	0	0	12	0												1					21.706	21.706	2	0.00017634	18126	DP690-12	161.79	131.1			0.43379	0.52187	NaN	1	0	Median	18356000	14231000	4124600	1740	2199	1634	3422	8444;8445;8446;8447;8448;8449	8448		6	9606
CSLLDPFAAVR	0	1	Unmodified	1247.6332	0.63324258	1591	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	3	0			1														20.759	20.759	2	0.051663	15981	DP690-3	86.67	38.579			NaN	NaN	NaN	0	0	Median	3325400	0	3325400	1741	1591	1635	3423	8450	8450		1	9606
CSLPAEEDSVLEK	1	0	Unmodified	1475.6814	0.68137456	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10	0										1							15.592	15.592	2	0.00015196	10435	DP690-10	121.29	75.689			0.79865	0.90273	NaN	1	0	Median	483740000	275870000	207870000	1742	604	1636	3424	8451;8452;8453;8454	8454		4	9606
CSLQAAAILDANDAHQTETSSSQVK	1	0	Unmodified	2644.2399	0.23987229	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	8	4				1								1					15.721	15.721	3	2.3246000000000002E-54	10015	DP690-12	259.16	241.16			0.97914	1.09	8.7998	2	0	Median	122250000	70341000	51909000	1743	2342	1637	3425;3426	8455;8456;8457;8458;8459;8460	8458		6	9606
CSLSLVGR	0	1	Unmodified	890.46439	0.46438634	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	14	0														1			14.239	14.239	2	0.066621	7881	DP690-14	108.09	74.73			1.0896	1.2462	NaN	1	0	Median	249880000	117130000	132740000	1744	1258	1638	3427	8461	8461		0	9606
CSNPLDTSVK	1	0	Unmodified	1119.523	0.52302343	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	4	0				1													12.96	12.96	2	9.5032E-05	5810	DP690-4	146.79	95.45			0.82659	0.85382	NaN	1	0	Median	235580000	126700000	108890000	1745	516	1639	3428	8462;8463;8464;8465;8466	8462		5	9606
CSNPLDTSVKEK	2	0	Unmodified	1376.6606	0.66057954	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	1	4	0				3													11.216	11.216	2;3	5.7974E-08	3698	DP690-4	173.76	101.95			0.78208	0.80721	14.24	2	0	Median	38937000	20839000	18098000	1746	516	1640	3429;3430;3431	8467;8468;8469;8470;8471;8472	8468		6	9606
CSPIGVYTSGK	1	0	Unmodified	1167.5594	0.55940893	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	3	0			1														13.88	13.88	2	0.038271	7168	DP690-3	66.19	46.193			0.82142	0.86873	NaN	1	0	Median	9463800	5343600	4120200	1747	652	1641	3432	8473	8473		1	9606
CSQDPESLLLQHNLR	0	1	Unmodified	1808.8839	0.88393097	857	P52630	STAT2	Signal transducer and activator of transcription 2	yes	yes	0	0	0	3	0			1														16.863	16.863	3	0.076408	11103	DP690-3	32.815	13.1			2.1244	2.4143	NaN	1	0	Median	11467000	3137900	8329100	1748	857	1642	3433	8474	8474		1	9606
CSTSIANQAVR	0	1	Unmodified	1205.5823	0.58226964	1885	Q96JY6	PDLIM2	PDZ and LIM domain protein 2	yes	yes	0	0	0	14	0														1			11.231	11.231	2	1.0424E-05	3760	DP690-14	193.41	168.52			0.95345	1.1502	NaN	1	0	Median	63248000	33053000	30196000	1749	1885	1643	3434	8475;8476;8477;8478	8478		4	9606
CSVCGGAIMPEPGQEETVR	0	1	Oxidation (M)	2091.9024	0.9023595	1344	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	1	0	4	0				1													14.001	14.001	2	0.00070979	7262	DP690-4	119.62	89.927			NaN	NaN	NaN	0	0	Median	2322000	2322000	0	1750	1344	1644	3435	8479	8479	2089	1	9606
CSVCKEPIMPAPGQEETVR	1	1	Oxidation (M)	2203.0072	0.0071589274	1806	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	1	1	4	0				1													12.538	12.538	3	0.00068723	5264	DP690-4	82.877	48.93			0.91895	1.0481	NaN	1	0	Median	3612500	1813100	1799400	1751	1806	1645	3436	8480	8480	2382	1	9606
CSVLAAANPVYGR	0	1	Unmodified	1376.6871	0.68706906	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	3	0			1														15.854	15.854	2	2.8992E-08	9812	DP690-3	203.29	144.61			0.69616	0.77493	NaN	1	0	Median	39639000	23068000	16571000	1752	581	1646	3437	8481;8482	8482		2	9606
CSVLAAANSVFGR	0	1	Unmodified	1350.6714	0.671419	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	3	0			1														19.065	19.065	2	9.0925E-05	13953	DP690-3	172.56	138.37			0.74019	0.82742	NaN	1	0	Median	36592000	19334000	17258000	1753	652	1647	3438	8483;8484;8485	8483		3	9606
CSVLPLSQNQEFMPFVK	1	0	Unmodified	2022.9907	0.99070423	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3	0			1														21.206	21.206	2	5.8706E-06	16579	DP690-3	128.31	108.3			0.82768	0.86888	NaN	1	0	Median	5816500	3305200	2511300	1754	720	1648	3439	8486;8487	8486		2	9606
CSVLPLSQNQEFMPFVK	1	0	Oxidation (M)	2038.9856	0.98561885	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	1	0	3	0			1														19.875	19.875	2	4.7917E-05	14994	DP690-3	150.14	114.55			NaN	NaN	NaN	0	0	Median	9211200	0	9211200	1755	720	1648	3440	8488;8489	8489	1052	2	9606
CSYIAESDAAVKEK	2	0	Unmodified	1569.7345	0.73447277	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	1	4	0				1													12.566	12.566	2	0.00099768	5326	DP690-4	148.78	113.98			NaN	NaN	NaN	0	0	Median	3046000	0	3046000	1756	1784	1649	3441	8490;8491;8492	8491		3	9606
CSYQPTMEGVHTVHVTFAGVPIPR	0	1	Oxidation (M)	2698.2996	0.2995762	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	10	0										2							16.894	16.894	3;4	0.00011891	12255	DP690-10	108.37	92.609			0.65311	0.75104	0.28257	2	0	Median	1000999999.9999999	619230000	381770000	1757	549	1650	3442;3443	8493;8494;8495;8496;8497;8498;8499	8496	704	7	9606
CSYQPTMEGVHTVHVTFAGVPIPR	0	1	Unmodified	2682.3047	0.30466158	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	0										1							17.787	17.787	4	1.3037E-06	13502	DP690-10	128.75	115.1			0.70593	0.78356	NaN	1	0	Median	553730000	330750000	222970000	1758	549	1650	3444	8500;8501;8502;8503	8501		4	9606
CTEDMTEDELREFFSQYGDVMDVFIPK	1	1	2 Oxidation (M)	3332.4199	0.41994643	1185	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	2	1	13	0													1				24.315	24.315	3	0.00011407	20580	DP690-13	72.513	68.233			0.94637	1.0889	NaN	1	0	Median	2506900	1134300	1372600	1759	1185	1651	3445	8504;8505	8505	1834;1835	2	9606
CTELNQAWSSLGK	1	0	Unmodified	1492.698	0.69802768	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							17.569	17.569	2	0.0068746	13329	DP690-10	79.23	63.366			0.7044	0.86568	NaN	1	0	Median	35149000	22111000	13038000	1760	1236	1652	3446	8506;8507	8507		2	9606
CTGGEVGATSALAPK	1	0	Unmodified	1417.6871	0.68712864	621	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	12	4								1								1	13.265	13.265	2	1.0573E-07	6185	DP690-16	194.96	161.09			0.90688	1.0038	11.171	2	0	Median	173490000	92203000	81285000	1761	621	1653	3447;3448	8508;8509;8510;8511;8512;8513;8514;8515;8516	8511		9	9606
CTSYNIPCTSDMAK	1	0	Oxidation (M)	1662.6688	0.66877774	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	1	0	11	0											1						13.585	13.585	2	0.00013082	7354	DP690-11	149.49	108.38			1.0878	1.3253	NaN	1	0	Median	34032000	17508000	16524000	1762	883	1654	3449	8517;8518	8518	1339	2	9606
CTSYNIPCTSDMAK	1	0	Unmodified	1646.6739	0.67386312	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	11	0											2						15.037	15.037	2	4.4114E-05	9486	DP690-11	135.1	114.81			0.76724	0.93051	NaN	1	0	Median	41344000	23456000	17888000	1763	883	1654	3450;3451	8519;8520;8521;8522	8521		4	9606
CTVDVPEDLREACANENAHK	1	1	Unmodified	2327.027	0.027042747	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	12	0												2					14.647	14.647	3;4	0.00068781	8491	DP690-12	77.506	68.687			0.71186	0.85836	18.996	2	0	Median	200510000	119080000	81430000	1764	829	1655	3452;3453	8523;8524;8525;8526;8527	8524		5	9606
CTVFHGAQVEDAFR	0	1	Unmodified	1635.7464	0.74637486	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.33	0.471		2	1														15.474	15.474	2;3	2.7664E-05	8223	DP690-2	196.84	166.86			0.90186	0.93689	12.788	3	0	Median	107550000	53493000	54059000	1765	789	1656	3454;3455;3456	8528;8529;8530;8531;8532;8533;8534;8535;8536	8529		9	9606
CTYAVGNHDFIEAYK	1	0	Unmodified	1786.7985	0.79847001	1421	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	14	0														1			15.675	15.675	2	0.0463	9822	DP690-14	91.093	63.945			NaN	NaN	NaN	0	0	Median	0	0	0	1766	1421	1657	3457	8537	8537		1	9606
CTYLVLDEADR	0	1	Unmodified	1353.6235	0.62346575	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11.5	0.5											1	1					17.112	17.112	2	0.00022784	12513	DP690-11	122.26	102.26			0.83028	0.95367	NaN	1	0	Median	195460000	104580000	90886000	1767	1793	1658	3458;3459	8538;8539;8540	8538		3	9606
CVACQNPDKPSPSTSVPAPASFK	2	0	Unmodified	2444.1464	0.1464296	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	1	10	0										1							13.872	13.872	3	0.013777	7831	DP690-10	80.702	56.424			NaN	NaN	NaN	0	0	Median	42791000	42791000	0	1768	808	1659	3460	8541;8542	8541		2	9606
CVANNQVETLEK	1	0	Unmodified	1403.6715	0.67147858	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10	0										1							12.908	12.908	2	0.0040823	6462	DP690-10	123.96	95.23			NaN	NaN	NaN	0	0	Median	28383000	0	28383000	1769	732	1660	3461	8543;8544	8543		2	9606
CVDEVAFQEEVVAVLKK	2	0	Unmodified	1962.0132	0.013213808	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	1	14	0														1			20.727	20.727	3	0.0020596	16606	DP690-14	103.39	51.664			NaN	NaN	NaN	0	0	Median	9523400	0	9523400	1770	662	1661	3462	8545;8546	8546		2	9606
CVEDPETGLCLLPLTDK	1	0	Unmodified	1958.9329	0.93291458	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							20.591	20.591	2	2.9735E-18	15586	DP690-9	200.76	148.07			NaN	NaN	NaN	0	0	Median	46168000	46168000	0	1771	1319	1662	3463;3464	8547;8548;8549;8550	8549		4	9606
CVEDPETGLR	0	1	Unmodified	1174.5288	0.52883709	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							13.097	13.097	2	9.8782E-05	6026	DP690-9	144.12	110.12			0.69458	0.84167	0.082821	2	0	Median	187040000	106170000	80863000	1772	1319	1663	3465;3466	8551;8552;8553;8554;8555;8556	8555		6	9606
CVEVETDVVSNTSGSAR	0	1	Unmodified	1808.8211	0.82105594	1312	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	14	0														3			14.31	14.31	2	1.9502E-11	7924	DP690-14	202.29	148.04			NaN	NaN	NaN	0	0	Median	0	0	0	1773	1312	1664	3467;3468;3469	8557;8558;8559	8557		3	9606
CVFELPAENDKPHDVEINK	2	0	Unmodified	2253.0736	0.073582234	313	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	1	15	0															1		15.462	15.462	3	7.2948E-05	9377	DP690-15	112.16	87.802			0.42473	0.48606	NaN	1	0	Median	14425000	8039200	6386200	1774	313	1665	3470	8560;8561;8562	8561		3	9606
CVFEMPNENDKLNDMEPSK	2	0	2 Oxidation (M)	2327.9708	0.970833	2293	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	2	1	15	0															3		13.73	13.73	2;3	3.2139E-05	7001	DP690-15	117.65	117.65			0.65184	0.74689	NaN	1	0	Median	157120000	95399000	61717000	1775	2293	1666	3471;3472;3473	8563;8564;8565;8566;8567;8568;8569;8570	8566	2744;2745	8	9606
CVFEMPNENDKLNDMEPSK	2	0	Oxidation (M)	2311.9759	0.97591838	2293	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	1	1	15	0															1		15.709	15.709	3	0.00018054	9726	DP690-15	100.77	92.684			0.56608	0.6479	NaN	1	0	Median	18589000	10293000	8296200	1776	2293	1666	3474	8571;8572;8573;8574;8575	8574	2744;2745	5	9606
CVGAELGLDCPGR	0	1	Unmodified	1402.6333	0.63331893	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	0	0	14	0														1			15.695	15.695	2	0.00084836	9890	DP690-14	104.79	80.452			0.81835	0.99008	NaN	1	0	Median	49346000	26639000	22707000	1777	1372	1667	3475	8576;8577	8576		2	9606
CVGAELGLDCPGRDYPNICAGTDR	0	2	Unmodified	2665.1683	0.16830403	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	0	1	14	0														1			17.212	17.212	3	0.00041122	11969	DP690-14	89.668	78.273			0.34159	0.40143	NaN	1	0	Median	37856000	27981000	9875200	1778	1372	1668	3476	8578;8579	8578		2	9606
CVGNFGNSSGEVDTK	1	0	Unmodified	1569.6729	0.67293514	1464	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	12	0												1					13	13	2	0.014865	6169	DP690-12	111.63	80.344			NaN	NaN	NaN	0	0	Median	0	0	0	1779	1464	1669	3477	8580	8580		1	9606
CVGNFGNSSGEVDTKK	2	0	Unmodified	1697.7679	0.76789816	1464	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	1	12	0												1					11.128	11.128	3	8.2602E-05	3671	DP690-12	112.24	99.064			0.846	0.98228	NaN	1	0	Median	34826000	19623000	15203000	1780	1464	1670	3478	8581;8582	8582		2	9606
CVICDSYVRPCTLVR	0	2	Unmodified	1896.9008	0.90084336	1536	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	1	16	0																2	15.937	15.937	2;3	0.0015916	9700	DP690-16	81.431	52.091			0.78894	0.83353	5.0885	2	0	Median	170460000	92081000	78384000	1781	1536	1671	3479;3480	8583;8584;8585;8586;8587	8583		5	9606
CVICGGPGVSDAYYCK	1	0	Unmodified	1804.7583	0.75826145	1536	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	0	12	4								1								1	15.712	15.712	2	7.8723E-08	9379	DP690-16	176.42	162.7			0.77988	0.82401	NaN	1	0	Median	246970000	137450000	109530000	1782	1536	1672	3481;3482	8588;8589;8590;8591;8592;8593;8594;8595	8590		8	9606
CVIFEIPGAPDDEAVR	0	1	Unmodified	1786.856	0.85598488	1876	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	13	0													1				20.181	20.181	2	6.1961E-07	15661	DP690-13	179.19	157.41			0.62358	0.76879	NaN	1	0	Median	21214000	12879000	8335600	1783	1876	1673	3483	8596;8597	8596		2	9606
CVISEHMQVEEK	1	0	Oxidation (M)	1503.6698	0.66976402	206	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	1	0	4	0				1													10.612	10.612	3	0.010272	3036	DP690-4	69.65	32.506			1.001	1.0831	NaN	1	0	Median	8343500	4764700	3578900	1784	206	1674	3484	8598	8598	214	1	9606
CVLLSNLSSTSHVPEVDPGSAELQK	1	0	Unmodified	2666.3221	0.32214536	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														17.901	17.901	3	2.5922E-10	11137	DP690-2	146.34	146.34			0.72261	0.75295	7.2399	2	0	Median	82405000	46637000	35768000	1785	789	1675	3485;3486	8599;8600;8601;8602;8603;8604	8599		6	9606
CVLNEGMPIYR	0	1	Oxidation (M)	1366.6373	0.63734168	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	1	0	13	0													1				14.835	14.835	2	0.00038415	8480	DP690-13	122.13	91.881			1.3049	1.5268	NaN	1	0	Median	146160000	62864000	83299000	1786	636	1676	3487	8605;8606;8607;8608	8607	873	4	9606
CVLPEEDSGELAKPK	2	0	Unmodified	1670.8185	0.81853675	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	1	6	0						1											13.73	13.73	3	1.004E-05	6580	DP690-6	156.08	156.08			0.7937	0.8205	NaN	1	0	Median	12223000	6549500	5673200	1787	2474	1677	3488	8609;8610;8611	8609		3	9606
CVSCQNLNPSNK	1	0	Unmodified	1419.6235	0.62348253	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.5	0.5									1	1							11.156	11.156	2	3.5887E-05	3513	DP690-9	185.61	152.23			0.7746	0.96024	4.0869	2	0	Median	48080000	25922000	22158000	1788	808	1678	3489;3490	8612;8613;8614;8615;8616;8617	8617		6	9606
CVTCIYYLNK	1	0	Unmodified	1332.6206	0.62062898	2077	Q9GZT9	EGLN1	Egl nine homolog 1	yes	yes	0	0	0	12	4								1								1	19.7	19.7	2	0.029038	13272	DP690-8	71.223	24.229			0.85328	0.99303	7.9325	2	0	Median	13846000	7102400	6743800	1789	2077	1679	3491;3492	8618;8619;8620	8620		3	9606
CVTVFSAPNYCDQMGNK	1	0	Oxidation (M)	2005.8332	0.83321731	870	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	1	0	4	0				2													16.11	16.11	2	0.007692	9973	DP690-4	122.33	95.619			NaN	NaN	NaN	0	0	Median	0	0	0	1790	870	1680	3493;3494	8621;8622	8621	1313	2	9606
CVVILPDSVR	0	1	Unmodified	1156.6274	0.62742892	666	P35520	CBS	Cystathionine beta-synthase	yes	yes	0	0	0	4	0				1													16.867	16.867	2	5.1948E-05	10875	DP690-4	170.3	127.7			0.74258	0.79852	NaN	1	0	Median	76114000	43092000	33022000	1791	666	1681	3495	8623;8624;8625	8624		3	9606
CYCADVIYPMAVVATAER	0	1	Unmodified	2087.9479	0.94785313	1045	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	14	0														2			20.937	20.937	2	3.0081E-08	16876	DP690-14	166.38	134.95			NaN	NaN	NaN	0	0	Median	17580000	17580000	0	1792	1045	1682	3496;3497	8626;8627;8628;8629	8627		4	9606
CYLTMTQALEAR	0	1	Oxidation (M)	1471.6799	0.67993477	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	5.5	3.5		1							1								15.173	15.173	2	0.00036773	8756	DP690-9	141.95	111.38			0.86952	0.98342	4.7974	2	0	Median	11331000	6766500	4564700	1793	1264	1683	3498;3499	8630;8631;8632;8633;8634;8635	8635	1906	6	9606
DAAAPAEPQAQHTR	0	1	Unmodified	1461.6961	0.69605384	286	O76024	WFS1	Wolframin	yes	yes	0	0	0	11	0											1						10.298	10.298	2	2.2059E-34	2506	DP690-11	229	178.97			NaN	NaN	NaN	0	0	Median	25726000	25726000	0	1794	286	1684	3500	8636;8637	8637		2	9606
DAADLLSPLALLR	0	1	Unmodified	1366.782	0.78201531	1290	Q14728	MFSD10	Major facilitator superfamily domain-containing protein 10	yes	yes	0	0	0	11.5	1.71									1	1	1	1	1	1			24.809	24.809	2	1.0303E-05	22836	DP690-10	187.99	165.41			0.65972	0.80268	9.5939	6	0	Median	105330000	61422000	43907000	1795	1290	1685	3501;3502;3503;3504;3505;3506	8638;8639;8640;8641;8642;8643;8644;8645;8646;8647;8648;8649;8650;8651;8652;8653;8654;8655;8656;8657;8658;8659;8660;8661;8662;8663	8638		26	9606
DAAFEALGTALK	1	0	Unmodified	1205.6292	0.62920306	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							19.336	19.336	2	0.00015206	15838	DP690-10	136.52	109.47			0.67086	0.82795	NaN	1	0	Median	85870000	46776000	39094000	1796	1240	1686	3507	8664;8665	8665		2	9606
DAAINSLVEIYR	0	1	Unmodified	1362.7143	0.71432967	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	10	0										1							20.241	20.241	2	0.0011521	17037	DP690-10	135.55	85.834			NaN	NaN	NaN	0	0	Median	0	0	0	1797	1546	1687	3508	8666	8666		1	9606
DAAIYLVTSLASK	1	0	Unmodified	1350.7395	0.73948179	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														21.189	21.189	2	0.0054269	16620	DP690-3	83.182	83.182			1.294	1.3592	NaN	1	0	Median	6464000	2769300	3694700	1798	892	1688	3509	8667;8668	8667		2	9606
DAALATALGDK	1	0	Unmodified	1044.5451	0.54513908	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					15.621	15.621	2	0.035029	9876	DP690-12	67.334	30.887			0.77049	0.91786	NaN	1	0	Median	44616000	25232000	19383000	1799	544	1689	3510	8669	8669		1	9606
DAALATALGDKK	2	0	Unmodified	1172.6401	0.6401021	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	12	0												2					13.211	13.211	2	0.00075228	6435	DP690-12	117.02	72			0.79612	0.87731	NaN	1	0	Median	446980000	183280000	263700000	1800	544	1690	3511;3512	8670;8671;8672	8671		3	9606
DAALAVAEAMADKAELEK	2	0	Oxidation (M)	1860.9139	0.91389369	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	1	1	12	0												1					17.049	17.049	2	2.3869E-12	11745	DP690-12	186.05	155.72			0.75671	0.87738	NaN	1	0	Median	36972000	23777000	13195000	1801	750	1691	3513	8673;8674;8675;8676	8673	1101	4	9606
DAANLLNDALAIR	0	1	Unmodified	1368.7361	0.73612775	1135	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	4	0				1													21.977	21.977	2	0.043862	16947	DP690-4	60.691	43.524			1.0684	1.2078	NaN	1	0	Median	1396500	574670	821830	1802	1135	1692	3514	8677	8677		1	9606
DAASVDKVLELK	2	0	Unmodified	1286.7082	0.70818166	127	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	1	14	0														1			16.635	16.635	2	0.0014008	11155	DP690-14	155.33	100.61			0.70213	0.78718	NaN	1	0	Median	45169000	31974000	13196000	1803	127	1693	3515	8678;8679	8679		2	9606
DADETKEWIEEK	2	0	Unmodified	1491.6729	0.67291837	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							14.626	14.626	2	0.0017749	8972	DP690-10	144.1	80.695			NaN	NaN	NaN	0	0	Median	24759000	24759000	0	1804	1236	1694	3516	8680;8681	8680		2	9606
DADPILISLR	0	1	Unmodified	1111.6237	0.62372375	1980	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	12.5	0.5												1	1				19.74	19.74	2	0.002319	15525	DP690-12	134.77	57.448			0.66277	0.81234	NaN	1	0	Median	79320000	66808000	12512000	1805	1980	1695	3517;3518	8682;8683;8684;8685	8683		4	9606
DADSITLFDVQQK	1	0	Unmodified	1478.7253	0.72528829	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	6.5	3.5			1							1							19.468	19.468	2	7.7659E-05	14482	DP690-3	149.33	123.52			2.9427	3.1291	NaN	1	0	Median	29252000	8723700	20528000	1806	878	1696	3519;3520	8686;8687;8688;8689	8689		4	9606
DAEAWFNEK	1	0	Unmodified	1108.4825	0.48253882	42;53	CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Z0;Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Y8	KRT10;KRT28;KRT25;KRT27	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27	no	no	0	0	0	5	2.74	1	1	1	1		1	1	1	1								17.273	17.273	2	1.0358999999999999E-22	8687	DP690-1	211.39	128.94		+	NaN	NaN	NaN	0	0	Median	130600000	130600000	0	1807	42;53	1697	3521;3522;3523;3524;3525;3526;3527;3528	8690;8691;8692;8693;8694;8695;8696;8697;8698;8699;8700;8701;8702;8703;8704;8705	8691		16	9606
DAEDAMDAMDGAVLDGR	0	1	2 Oxidation (M)	1782.7036	0.70364292	1081	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	yes	yes	0	2	0	15	0															1		14.816	14.816	2	3.8312E-07	8523	DP690-15	149.57	141.81			1.1238	1.2961	NaN	1	0	Median	8113500	4364600	3748900	1808	1081	1698	3529	8706;8707;8708	8707	1701;1702	3	9606
DAEDWFFSK	1	0	Unmodified	1143.4873	0.48728985	45	CON__Q04695;Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	13	0													3				20.811	20.811	2	0.025647	16456	DP690-13	119.21	47.831		+	NaN	NaN	NaN	0	0	Median	0	0	0	1809	45	1699	3530;3531;3532	8709;8710;8711	8711		3	9606
DAEEWFFTK	1	0	Unmodified	1171.5186	0.51858998	29	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	no	no	0	0	0	1	0	1																20.346	20.346	2	0.0025425	11981	DP690-1	134.48	77.197		+	NaN	NaN	NaN	0	0	Median	595860	595860	0	1810	29	1700	3533	8712;8713	8712		2	9606
DAEGILEDLQSYR	0	1	Unmodified	1507.7155	0.71545188	2226	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	6	0						1											21.831	21.831	2	6.6528E-05	16104	DP690-6	145.28	121.9			0.89282	1.0119	NaN	1	0	Median	4108100	2287200	1820900	1811	2226	1701	3534	8714;8715;8716	8715		3	9606
DAELQDQEFGKR	1	1	Unmodified	1434.6739	0.67392142	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	1	6	4		1								1							12.825	12.825	2	0.00017654	6378	DP690-10	144.65	61.003			0.66282	0.84133	NaN	1	0	Median	57484000	31230000	26255000	1812	2065	1702	3535;3536	8717;8718;8719;8720	8718		4	9606
DAESIHQYLLQR	0	1	Unmodified	1471.7419	0.74194141	900	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	3	0			1														15.94	15.94	2	0.0044886	9920	DP690-3	120.63	58.328			NaN	NaN	NaN	0	0	Median	4173800	0	4173800	1813	900	1703	3537	8721;8722	8721		2	9606
DAETWFLSK	1	0	Unmodified	1095.5237	0.52367535	40	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	10	0										1							19.658	19.658	2	0.068769	16223	DP690-10	87.639	40.558		+	NaN	NaN	NaN	0	0	Median	0	0	0	1814	40	1704	3538	8723	8723		1	9606
DAFADAVQR	0	1	Unmodified	991.47231	0.47230849	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	7	4			1								1						14.473	14.473	2	0.041952	8654	DP690-11	99.136	9.4375			0.67519	0.77233	NaN	1	0	Median	23634000	13813000	9820700	1815	1798	1705	3539;3540	8724;8725	8724		2	9606
DAFLGSFLYEYSR	0	1	Unmodified	1566.7355	0.73545904	37	CON__P02769			yes	yes	0	0	0	2.5	1.12	1	1	1	1													23.062	23.062	2	5.6382E-17	16694	DP690-2	193.83	149.22		+	NaN	NaN	NaN	0	0	Median	41477000	41477000	0	1816	37	1706	3541;3542;3543;3544	8726;8727;8728;8729;8730;8731;8732;8733;8734	8729		9	
DAFPEAIIVKPSDIFGR	1	1	Unmodified	1873.9938	0.993799	1371	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	1	14	0														1			21.473	21.473	3	0.031869	17501	DP690-14	68.257	39.3			0.8999	1.0992	NaN	1	0	Median	5199400	2350100	2849400	1817	1371	1707	3545	8735	8735		0	9606
DAGEGGLSLAIEGPSK	1	0	Unmodified	1499.7468	0.74675201	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9	3.21		1							1	1	3						17.93	17.93	2	4.2044E-22	12232	DP690-9	244.73	223.16			0.73694	0.77296	7.1687	3	0	Plateau	1371100000	776680000	594390000	1818	549	1708	3546;3547;3548;3549;3550;3551	8736;8737;8738;8739;8740;8741;8742;8743;8744;8745;8746;8747;8748;8749;8750;8751	8749		16	9606
DAGEGGLSLAVEGPSK	1	0	Unmodified	1485.7311	0.73110195	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	9	3.16		1								3	2						16.864	16.864	2	4.0268E-09	12190	DP690-10	190.35	151.6			0.74706	0.83345	21.285	2	0	Median	138850000	67108000	71738000	1819	1270	1709	3552;3553;3554;3555;3556;3557	8752;8753;8754;8755;8756;8757;8758;8759;8760;8761;8762	8753		11	9606
DAGEGLLAVQITDPEGKPK	2	0	Unmodified	1937.0106	0.010571271	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	9.25	3.39		2							2	2	3	3					17.747	17.747	2;3	2.1079E-36	11994	DP690-9	302.73	273.65			0.68523	0.73866	10.237	7	0	Median	2513700000	1999599999.9999998	514130000	1820	549	1710	3558;3559;3560;3561;3562;3563;3564;3565;3566;3567;3568;3569	8763;8764;8765;8766;8767;8768;8769;8770;8771;8772;8773;8774;8775;8776;8777;8778;8779;8780;8781;8782;8783;8784;8785;8786;8787;8788;8789;8790	8785		28	9606
DAGEGLLAVQITDQEGKPK	2	0	Unmodified	1968.0164	0.016384931	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	8.67	3.04		1							1	3	1						17.152	17.152	2;3	4.1022999999999996E-50	12664	DP690-10	330.26	249.57			0.78649	0.89147	25.525	4	0	Median	629630000	359850000	269780000	1821	250	1711	3570;3571;3572;3573;3574;3575	8791;8792;8793;8794;8795;8796;8797;8798;8799;8800;8801;8802;8803;8804;8805;8806;8807;8808	8796		18	9606
DAGEGLLTVQILDPEGKPK	2	0	Unmodified	1979.0575	0.057521464	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	6	4		2								2							19.716	19.716	2;3	1.0257E-13	16291	DP690-10	186.72	134.12			0.74873	0.84605	37.218	4	0	Median	146490000	84901000	61586000	1822	1270	1712	3576;3577;3578;3579	8809;8810;8811;8812;8813;8814;8815;8816;8817;8818;8819;8820;8821	8809		13	9606
DAGIEPGPDTYLALLNAYAEK	1	0	Unmodified	2220.095	0.095029182	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10	0										1							24.253	24.253	2	1.7741E-09	22152	DP690-10	145.52	122.61			0.65844	0.79976	NaN	1	0	Median	16796000	10242000	6554100	1823	732	1713	3580	8822;8823;8824	8822		3	9606
DAGIEPGPDTYLALLNAYAEKGDIDHVK	2	0	Unmodified	2984.4767	0.47673175	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	10	0										1							21.851	21.851	4	3.0823E-05	19263	DP690-10	83.465	83.465			0.6245	0.79077	NaN	1	0	Median	43543000	26322000	17222000	1824	732	1714	3581	8825;8826	8825		2	9606
DAGIYTCIATNR	0	1	Unmodified	1353.6347	0.63469914	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	10.5	0.5										1	1						15.984	15.984	2	0.00041036	10948	DP690-10	114.89	82.143			1.0639	1.2339	31.882	2	0	Median	506710000	262840000	243870000	1825	1758	1715	3582;3583	8827;8828;8829;8830	8827		4	9606
DAGLHCLELGHTGEAGPHAMVR	0	1	Oxidation (M)	2343.0848	0.084832397	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	1	0	3	0			1														13.392	13.392	4	0.02169	6538	DP690-3	43.37	43.37			0.84817	0.96597	NaN	1	0	Median	25675000	15170000	10506000	1826	134	1716	3584	8831	8831	153	1	9606
DAGLSFKDDMPK	2	0	Oxidation (M)	1338.6126	0.61256672	2242	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	1	1	13	0													1				13.364	13.364	2	0.0028071	6387	DP690-13	110.08	91.405			0.93993	1.0587	NaN	1	0	Median	47483000	22988000	24495000	1827	2242	1717	3585	8832;8833;8834;8835	8833	2711	4	9606
DAGPLLISLK	1	0	Unmodified	1025.6121	0.61209643	633	P31146	CORO1A	Coronin-1A	yes	yes	0	0	0	13	0													1				19.497	19.497	2	0.077662	14742	DP690-13	81.972	30.905			NaN	NaN	NaN	0	0	Median	9843800	0	9843800	1828	633	1718	3586	8836	8836		1	9606
DAGQISGLNVLR	0	1	Unmodified	1241.6728	0.67279921	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	8	4				1								1					18.014	18.014	2	7.6873E-08	13154	DP690-12	204.79	150.01			1.9841	2.2763	66.45	2	0	Median	105930000	42460000	63467000	1829	695	1719	3587;3588	8837;8838;8839;8840;8841;8842	8837		6	9606
DAGSGPPATEGSMDTLENVQLK	1	0	Unmodified	2216.0267	0.026691621	1579	Q86VY4	TSPYL5	Testis-specific Y-encoded-like protein 5	yes	yes	0	0	0	13	0													2				18.309	18.309	2	0.0011796	13320	DP690-13	125.36	99.638			NaN	NaN	NaN	0	0	Median	3385600	0	3385600	1830	1579	1720	3589;3590	8843;8844	8844		2	9606
DAGTIAGLNVLR	0	1	Unmodified	1198.667	0.66698555	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	7	4.04		1	3	1	1	1	1		1		2	1			1		18.968	18.968	2	2.1852E-06	13402	DP690-4	195.57	142.64			1.2977	1.4931	39.419	6	0	Median	1366800000	574880000	791910000	1831	463	1721	3591;3592;3593;3594;3595;3596;3597;3598;3599;3600;3601;3602;3603	8845;8846;8847;8848;8849;8850;8851;8852;8853;8854;8855;8856;8857;8858;8859;8860;8861;8862;8863;8864;8865;8866;8867;8868;8869;8870;8871;8872	8861		28	9606
DAGTIAGLNVMR	0	1	Unmodified	1216.6234	0.62340617	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	7.5	3.5				1							1						18.003	18.003	2	0.0016065	12454	DP690-4	99.013	66.693			1.435	1.6293	NaN	1	0	Median	25274000	10426000	14849000	1832	462	1722	3604;3605	8873;8874	8874		2	9606
DAGTIAGLNVMR	0	1	Oxidation (M)	1232.6183	0.6183208	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	1	0	4	0				1													15.851	15.851	2	0.00069961	9608	DP690-4	114.51	73.087			1.5678	1.6281	NaN	1	0	Median	154440000	58250000	96189000	1833	462	1722	3606	8875;8876;8877	8875	540	3	9606
DAGVIAGLNVLR	0	1	Unmodified	1196.6877	0.68772099	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	8	4				1								1					19.98	19.98	2	0.00015812	15764	DP690-12	143.04	113.26			1.3062	1.4513	21.181	2	0	Median	208800000	95781000	113020000	1834	449	1723	3607;3608	8878;8879;8880;8881;8882;8883;8884;8885	8879		8	9606
DAGYGGLSLSIEGPSK	1	0	Unmodified	1549.7624	0.76240208	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.67	0.471									1	2							18.909	18.909	2	0.00019961	15185	DP690-10	117.07	98.106			0.61649	0.77424	47.275	2	0	Median	125970000	57941000	68028000	1835	549	1724	3609;3610;3611	8886;8887;8888;8889	8886		4	9606
DAIAALGLLQK	1	0	Unmodified	1111.6601	0.66010926	10	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	10	0										1							20.415	20.415	2	0.00073522	17316	DP690-10	108.98	75.979			0.7588	0.93668	NaN	1	0	Median	84154000	47297000	36857000	1836	10	1725	3612	8890;8891;8892;8893	8891		4	9606
DAIGISLLK	1	0	Unmodified	928.55933	0.55933258	1703	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	yes	yes	0	0	0	13	0													1				19.12	19.12	2	0.062993	14344	DP690-13	63.419	14.663			0.8205	0.94886	NaN	1	0	Median	54991000	29845000	25145000	1837	1703	1726	3613	8894;8895;8896	8896		3	9606
DAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADR	1	1	Oxidation (M)	3916.9894	0.98940568	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	1	1	8.33	3.77			1								2						19.756	19.756	4;5	3.4158E-12	16414	DP690-11	104.29	95.596			0.65512	0.77296	7.6764	3	0	Plateau	273470000	162860000	110610000	1838	470	1727	3614;3615;3616	8897;8898;8899;8900;8901;8902;8903;8904;8905;8906;8907;8908;8909;8910;8911	8903	564	15	9606
DAINQGMDEELERDEK	1	1	Oxidation (M)	1906.8214	0.82144987	466	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	1	1	14	0														1			12.862	12.862	3	0.054782	5841	DP690-14	54.812	37.111			0.67564	0.84923	NaN	1	0	Median	25136000	14926000	10211000	1839	466	1728	3617	8912	8912		0	9606
DAITQALFLR	0	1	Unmodified	1146.6397	0.63970816	2410	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	11	0											1						21.293	21.293	2	0.0033783	18371	DP690-11	93.162	70.671			0.81947	0.99801	NaN	1	0	Median	18540000	9459100	9081100	1840	2410	1729	3618	8913;8914	8914		2	9606
DAKSHGLIDEQILCQLK	2	0	Unmodified	1967.0146	0.014610792	1102	Q03001	DST	Dystonin	yes	yes	0	0	1	9	0									1								17.224	17.224	3	0.089526	11311	DP690-9	35.757	12.531			0.95617	1.1285	NaN	1	0	Median	21467000	11890000	9577500	1841	1102	1730	3619	8915	8915		1	9606
DALDGPAAEAEPEHSFDGLR	0	1	Unmodified	2095.9447	0.94467655	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.4	0.49									3	2							17.025	17.025	2;3	1.0804E-39	11121	DP690-9	243.3	200			0.83834	1.0067	15.277	2	0	Median	244340000	169370000	74977000	1842	1319	1731	3620;3621;3622;3623;3624	8916;8917;8918;8919;8920;8921;8922;8923;8924	8924		9	9606
DALDGPAAEAEPEHSFDGLRR	0	2	Unmodified	2252.0458	0.045787579	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							15.624	15.624	3	1.1019E-05	9357	DP690-9	124.29	99.088			0.80103	0.91016	9.7569	2	0	Median	132540000	74876000	57659000	1843	1319	1732	3625;3626	8925;8926;8927;8928;8929;8930	8929		6	9606
DALGDSLQVPVSPSSTTSSR	0	1	Unmodified	2002.9807	0.98072771	2438	Q9Y2D5	AKAP2	A-kinase anchor protein 2	yes	yes	0	0	0	11	0											2						17.859	17.859	2	2.2198E-17	13518	DP690-11	203.85	136.77			0.76192	0.91579	NaN	1	0	Median	69453000	25620000	43833000	1844	2438	1733	3627;3628	8931;8932;8933	8933		3	9606
DALLSALSIQNYHLECNETK	1	0	Unmodified	2318.1213	0.12126071	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										2							19.938	19.938	3	2.286E-05	16705	DP690-10	125.59	92.441			NaN	NaN	NaN	0	0	Median	88666000	45153000	43513000	1845	1080	1734	3629;3630	8934;8935	8935		2	9606
DALNIETAIK	1	0	Unmodified	1086.5921	0.59208927	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	9.89	4.84	1					2		1	1					2	1	1	17.635	17.635	2	4.4306E-05	11614	DP690-9	172.21	112.19			0.83198	0.89599	14.455	8	0	Median	6348899999.999999	3417699999.9999995	2931199999.9999995	1846	404	1735	3631;3632;3633;3634;3635;3636;3637;3638;3639	8936;8937;8938;8939;8940;8941;8942;8943;8944;8945;8946;8947;8948;8949;8950;8951;8952;8953;8954;8955;8956;8957;8958;8959;8960;8961;8962	8961		27	9606
DALNLAQMQEQTLQLEQQSK	1	0	Oxidation (M)	2331.1376	0.13763905	2235	Q9NVI7;Q5T2N8	ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	yes	no	0	1	0	12	0												1					18.467	18.467	2	1.7004000000000001E-31	13830	DP690-12	252.46	252.46			0.72094	0.87501	NaN	1	0	Median	11709000	6293400	5415400	1847	2235	1736	3640	8963;8964;8965	8964	2707	3	9606
DALNQATSQVESK	1	0	Unmodified	1389.6736	0.67358707	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	10.5	0.5										1	1						14.273	14.273	2	0.00029233	8512	DP690-10	114.71	92.682			0.89209	1.1043	NaN	1	0	Median	64941000	30363000	34578000	1848	2303	1737	3641;3642	8966;8967	8966		2	9606
DALQQNPGAFR	0	1	Unmodified	1215.5996	0.59963426	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	13	0													1				14.19	14.19	2	7.2321E-05	7631	DP690-13	140.5	108.97			0.77904	0.93498	NaN	1	0	Median	90025000	48500000	41525000	1849	1906	1738	3643	8968;8969;8970;8971	8970		4	9606
DALQVAQEMK	1	0	Oxidation (M)	1147.5543	0.55432356	2059	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	1	0	15	0															1		12.845	12.845	2	0.003541	5809	DP690-15	125.16	23.496			NaN	NaN	NaN	0	0	Median	59045000	59045000	0	1850	2059	1739	3644	8972;8973	8973	2575	2	9606
DALQVAQEMK	1	0	Unmodified	1131.5594	0.55940893	2059	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	15	0															1		16.073	16.073	2	0.017642	10216	DP690-15	102.07	64.518			NaN	NaN	NaN	0	0	Median	9130100	9130100	0	1851	2059	1739	3645	8974	8974		1	9606
DALSDLALHFLNK	1	0	Unmodified	1455.7722	0.7721789	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	8	4				2								2					22.894	22.894	2;3	2.6273E-06	19392	DP690-12	194.12	153.01			0.91778	1.1029	27.671	3	0	Median	42455000	19864000	22591000	1852	827	1740	3646;3647;3648;3649	8975;8976;8977;8978;8979;8980;8981;8982;8983;8984;8985;8986;8987;8988;8989;8990;8991;8992;8993;8994	8978		20	9606
DALVNAVIDSLSAYR	0	1	Unmodified	1605.8362	0.83623572	327	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	11	0											1						25.301	25.301	2	1.187E-05	23237	DP690-11	128.46	113.13			1.0972	1.3553	NaN	1	0	Median	6648500	3128500	3520000	1853	327	1741	3650	8995;8996;8997;8998	8997		4	9606
DALVNAVVDSLSAYGSTVSNLQHSALMAPSSLK	1	0	Unmodified	3344.6922	0.69222061	328	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	11	0											1						26.013	26.013	3	0.059697	24017	DP690-11	54.017	27.097			NaN	NaN	NaN	0	0	Median	0	0	0	1854	328	1742	3651	8999	8999		1	9606
DAMLELNASNDR	0	1	Oxidation (M)	1363.6038	0.60379294	663	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	1	0	6	0						1											14.142	14.142	2	0.00057338	7120	DP690-6	117.02	70.894			1.0604	1.2149	NaN	1	0	Median	6223700	3079000	3144700	1855	663	1743	3652	9000;9001	9001	933	2	9606
DANLYISGLPR	0	1	Unmodified	1217.6404	0.64043645	1346	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	14	0														3			18.298	18.298	2	0.0069494	13321	DP690-14	109.83	44.525			NaN	NaN	NaN	0	0	Median	125610000	125610000	0	1856	1346	1744	3653;3654;3655	9002;9003;9004	9002		3	9606
DAPPLLPSDTGQGYR	0	1	Unmodified	1585.7736	0.77363546	2182	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	12	0												1					16.814	16.814	2	0.0085674	11571	DP690-12	105.36	72.499			NaN	NaN	NaN	0	0	Median	11667000	0	11667000	1857	2182	1745	3656	9005	9005		1	9606
DAPQDFHPDR	0	1	Unmodified	1196.521	0.52104959	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8.67	3.65		2							1	2	3	1					11.133	11.133	2;3	0.00012374	3319	DP690-9	139.98	113.93			0.82105	0.85881	89.533	9	0	Median	2271900000	1037599999.9999999	1234300000	1858	549	1746	3657;3658;3659;3660;3661;3662;3663;3664;3665	9006;9007;9008;9009;9010;9011;9012;9013;9014;9015;9016;9017;9018;9019;9020;9021;9022;9023;9024;9025;9026;9027;9028;9029;9030;9031;9032;9033;9034;9035;9036;9037;9038	9034		33	9606
DAPQDFHPDRVK	1	1	Unmodified	1423.6844	0.68442653	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	9.5	0.5									1	1							10.941	10.941	3	0.00126	3706	DP690-10	90.434	67.422			0.67821	0.78895	10.141	2	0	Median	242390000	141340000	101060000	1859	549	1747	3666;3667	9039;9040;9041;9042	9039		4	9606
DAPVDHLGTEHCYDSSAPPK	1	0	Unmodified	2194.9589	0.95894641	1047	P78549	NTHL1	Endonuclease III-like protein 1	yes	yes	0	0	0	14	0														1			12.862	12.862	3	1.9495E-05	5941	DP690-14	121.51	96.608			0.6347	0.76953	NaN	1	0	Median	33449000	22617000	10832000	1860	1047	1748	3668	9043;9044;9045	9044		3	9606
DAQDVQASQAEADQQQTR	0	1	Unmodified	1987.8831	0.88313893	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	10.8	0.829										2	1	1					11.766	11.766	2	3.2362E-59	4802	DP690-10	338.12	298.94			0.70937	0.86688	10.943	2	0	Median	93690000	57774000	35916000	1861	2303	1749	3669;3670;3671;3672	9046;9047;9048;9049;9050;9051;9052;9053;9054;9055;9056;9057;9058	9049		13	9606
DAQELYAAGENR	0	1	Unmodified	1335.6055	0.6055075	828	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	4	0				1													14.044	14.044	2	0.00018379	7328	DP690-4	143.24	102.67			0.91404	1.0445	NaN	1	0	Median	22189000	10277000	11912000	1862	828	1750	3673	9059;9060	9060		2	9606
DAQGQPGLER	0	1	Unmodified	1069.5152	0.51523593	131	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	2	0		1															10.787	10.787	2	0.0091751	2910	DP690-2	84.817	59.009			1.1292	1.1715	NaN	1	0	Median	4540500	2332900	2207600	1863	131	1751	3674	9061	9061		1	9606
DAQKHDVEVLER	1	1	Unmodified	1437.7212	0.72120596	1473	Q6ICH7	ASPHD2	Aspartate beta-hydroxylase domain-containing protein 2	yes	yes	0	0	1	14	0														1			10.893	10.893	3	6.7247E-07	3351	DP690-14	195.72	165.58			0.74082	0.90526	NaN	1	0	Median	58751000	33850000	24900000	1864	1473	1752	3675	9062;9063;9064	9063		3	9606
DAQPSFSAEDIAK	1	0	Unmodified	1377.6412	0.64122431	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	7	4			1								1						16.047	16.047	2	0.0026783	10874	DP690-11	90.685	50.627			0.71408	0.7557	2.5777	2	0	Median	471690000	273800000	197890000	1865	581	1753	3676;3677	9065;9066;9067;9068;9069;9070	9066		6	9606
DASALLDPMECTDTAEEQR	0	1	Oxidation (M)	2166.9045	0.90452757	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	1	0	4	0				1													17.244	17.244	2	7.4356E-12	11520	DP690-4	177.21	158.48			0.73401	0.84917	NaN	1	0	Median	4503700	2161800	2342000	1866	2000	1754	3678	9071;9072;9073	9073	2535	3	9606
DASDDLDDLNFFNQK	1	0	Unmodified	1755.7588	0.75877326	540	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	13	0													1				22.006	22.006	2	1.383E-05	17943	DP690-13	131.12	105.88			0.85634	0.9741	NaN	1	0	Median	8832000	4106500	4725400	1867	540	1755	3679	9074;9075;9076;9077	9075		4	9606
DASLMVTNDGATILK	1	0	Oxidation (M)	1563.7814	0.78142296	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	0	6	3.46				3								1					17.371	17.371	2	1.8369E-09	11578	DP690-4	201.46	139.9			1.0909	1.2463	20.846	2	0	Median	46584000	25432000	21152000	1868	1044	1756	3680;3681;3682;3683	9078;9079;9080;9081;9082;9083	9082	1574	6	9606
DASSTYSQVENLNR	0	1	Unmodified	1582.7223	0.72232817	2333	Q9UFC0	LRWD1	Leucine-rich repeat and WD repeat-containing protein 1	yes	yes	0	0	0	10	0										1							15.612	15.612	2	0.03644	10379	DP690-10	61.419	41.038			1.1718	1.4678	NaN	1	0	Median	44374000	19792000	24582000	1869	2333	1757	3684	9084	9084		1	9606
DASVAEAWLLGQEPYLSSR	0	1	Unmodified	2091.0273	0.027283968	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							23.031	23.031	2	3.7942E-31	20758	DP690-10	250.81	220.33			0.89086	1.1175	NaN	1	0	Median	12569000	7253600	5315900	1870	1080	1758	3685	9085;9086	9085		2	9606
DATPVPCGR	0	1	Unmodified	971.44946	0.44946455	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	11	0											1						10.81	10.81	2	0.054483	3440	DP690-11	66.073	21.381			0.73312	0.87451	NaN	1	0	Median	37941000	17825000	20116000	1871	83	1759	3686	9087	9087		1	9606
DATSLLAAGEGGLLDEVEPLRPDELER	0	2	Unmodified	2864.4403	0.44034624	2299	Q9P270	SLAIN2	SLAIN motif-containing protein 2	yes	yes	0	0	1	11	0											1						23.091	23.091	3	6.8373E-05	20723	DP690-11	88.555	73.156			0.63276	0.78002	NaN	1	0	Median	26158000	15873000	10284000	1872	2299	1760	3687	9088;9089	9088		2	9606
DAVEDLESVGK	1	0	Unmodified	1160.5561	0.55609769	1049	P81605	DCD	Dermcidin;Survival-promoting peptide;DCD-1	yes	yes	0	0	0	8	0								1									17.335	17.335	2	0.023303	10702	DP690-8	96.143	59.122			NaN	NaN	NaN	0	0	Median	0	0	0	1873	1049	1761	3688	9090	9090		1	9606
DAVIEFLLDK	1	0	Unmodified	1161.6281	0.62814043	2043	Q9BY42	RTFDC1	Protein RTF2 homolog	yes	yes	0	0	0	6	0						1											22.673	22.673	2	0.011209	16929	DP690-6	81.972	81.972			1.1458	1.2656	NaN	1	0	Median	2515200	918970	1596200	1874	2043	1762	3689	9091;9092;9093	9092		3	9606
DAVIQDLER	0	1	Unmodified	1057.5404	0.54038805	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	8.67	4.03			1								1	1					16.297	16.297	2	0.00065327	11270	DP690-11	143.37	58.876			0.89018	1.0087	17.951	2	0	Median	473400000	259290000	214120000	1875	1758	1763	3690;3691;3692	9094;9095;9096;9097;9098;9099;9100	9094		7	9606
DAVLLLFANK	1	0	Unmodified	1102.6386	0.63864553	524	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	12	4								1								1	21.331	21.331	2	0.014239	15019	DP690-8	77.732	51.039			0.95589	1.0955	44.533	2	0	Median	3053000	1467000	1586000	1876	524	1764	3693;3694	9101;9102;9103	9102		3	9606
DAVSNTTNQLESK	1	0	Unmodified	1405.6685	0.66850169	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	10.5	0.5										1	1						13.931	13.931	2	1.3089E-05	7969	DP690-10	185.77	159.06			0.93627	1.1562	NaN	1	0	Median	81387000	39783000	41605000	1877	1570	1765	3695;3696	9104;9105;9106;9107;9108	9105		5	9606
DAYRPTTDADKIEDEVTR	1	2	Unmodified	2093.9865	0.98654137	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	2	9	0									1								14.947	14.947	3	0.0091878	8466	DP690-9	61.096	61.096			0.7631	0.86607	NaN	1	0	Median	10241000	5735900	4504700	1878	2411	1766	3697	9109	9109		1	9606
DCAVLSAIIDLIK	1	0	Unmodified	1429.7851	0.78505177	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	11	0											1						27.411	27.411	2	0.0031479	25319	DP690-11	89.403	72.237			0.85472	1.0211	NaN	1	0	Median	3912200	2380400	1531900	1879	2105	1767	3698	9110;9111;9112;9113;9114	9112		5	9606
DCDLQEDACYNCGR	0	1	Unmodified	1774.6345	0.6345175	985	P62633	CNBP	Cellular nucleic acid-binding protein	yes	yes	0	0	0	15	0															1		14.052	14.052	2	3.3991E-09	7490	DP690-15	203.02	199.81			1.0075	1.1709	NaN	1	0	Median	23482000	11915000	11567000	1880	985	1768	3699	9115;9116	9115		2	9606
DCGGAAQLAGPAAEADPLGR	0	1	Unmodified	1895.8796	0.87957387	2493	Q9Y508	RNF114	E3 ubiquitin-protein ligase RNF114	yes	yes	0	0	0	15	0															1		17.705	17.705	2	7.319E-05	12298	DP690-15	119.77	91.009			0.86631	1.0008	NaN	1	0	Median	6812400	3418900	3393500	1881	2493	1769	3700	9117;9118	9117		2	9606
DCHEEVYAGSHQYPGR	0	1	Unmodified	1903.7908	0.79075887	2111	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	8	4				1								1					11.53	11.53	3	5.194E-10	4223	DP690-12	193.98	166.72			0.81258	0.95417	7.8605	2	0	Median	50724000	28864000	21860000	1882	2111	1770	3701;3702	9119;9120;9121;9122;9123;9124;9125;9126;9127;9128	9123		10	9606
DCPGTAEEYER	0	1	Unmodified	1325.5194	0.51939461	1849	Q96F07	CYFIP2	Cytoplasmic FMR1-interacting protein 2	yes	yes	0	0	0	3	0			1														12.165	12.165	2	0.060243	4868	DP690-3	84.817	40.44			NaN	NaN	NaN	0	0	Median	0	0	0	1883	1849	1771	3703	9129	9129		1	9606
DCPLNAEAASSK	1	0	Unmodified	1261.5609	0.5608655	1152	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	11	0											1						12.229	12.229	2	0.0013807	5278	DP690-11	101.39	75.33			0.83923	1.013	NaN	1	0	Median	51921000	27572000	24349000	1884	1152	1772	3704	9130;9131;9132	9130		3	9606
DCQIAHGAAQFLR	0	1	Unmodified	1485.7147	0.7146808	630	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	3	0			1														16.094	16.094	3	0.050774	10062	DP690-3	66.538	39.208			NaN	NaN	NaN	0	0	Median	5009600	0	5009600	1885	630	1773	3705	9133	9133		1	9606
DCTVEMPILK	1	0	Unmodified	1204.5832	0.58318084	908	P56545;Q13363	CTBP2;CTBP1	C-terminal-binding protein 2;C-terminal-binding protein 1	yes	no	0	0	0	13	0													1				18.173	18.173	2	0.0012673	13096	DP690-13	113.71	93.92			0.77955	0.90109	NaN	1	0	Median	59772000	31588000	28185000	1886	908	1774	3706	9134;9135;9136;9137	9136		4	9606
DCTVNGDEPDCVPCQEGK	1	0	Unmodified	2078.798	0.79795401	583	P25445	FAS	Tumor necrosis factor receptor superfamily member 6	yes	yes	0	0	0	13.2	0.433													3	1			13.394	13.394	2	1.4201E-39	6666	DP690-14	244.71	234.57			NaN	NaN	NaN	0	0	Median	14276000	8046500	6229700	1887	583	1775	3707;3708;3709;3710	9138;9139;9140;9141;9142	9142		5	9606
DCVSPSEYTAACSR	0	1	Unmodified	1601.645	0.64500583	2366	Q9UK41	VPS28	Vacuolar protein sorting-associated protein 28 homolog	yes	yes	0	0	0	15	0															2		13.709	13.709	2	0.0031503	7051	DP690-15	126.71	100.19			NaN	NaN	NaN	0	0	Median	6430800	0	6430800	1888	2366	1776	3711;3712	9143;9144	9143		2	9606
DDAVPNLIQLITNSVEMHAYTVQR	0	1	Oxidation (M)	2742.3647	0.36467888	188	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	1	0	11	0											1						25.632	25.632	3	0.00041073	23613	DP690-11	93.729	93.729			0.75652	0.93837	NaN	1	0	Median	7370400	3823400	3547000	1889	188	1777	3713	9145;9146;9147	9147	200	3	9606
DDAVPNLIQLITNSVEMHAYTVQR	0	1	Unmodified	2726.3698	0.36976425	188	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	11	0											1						26.006	26.006	3	0.00013404	23998	DP690-11	110.4	90.712			0.84693	1.0271	NaN	1	0	Median	4235500	2455100	1780400	1890	188	1777	3714	9148;9149;9150;9151;9152;9153	9150		6	9606
DDDIAALVVDNGSGMCK	1	0	Acetyl (Protein N-term);Oxidation (M)	1836.787	0.78697862	926	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	1	1	0	13.1	2.52				1		1	1		1	1		1	1	27	2	1	24.583	24.583	2	7.6584E-13	15876	DP690-6	198.97	184.73			0.84298	1.0076	10.514	21	0	Median	516080000	282970000	233110000	1891	926	1778	3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727;3728;3729;3730;3731;3732;3733;3734;3735;3736;3737;3738;3739;3740;3741;3742;3743;3744;3745;3746;3747;3748;3749;3750;3751	9154;9155;9156;9157;9158;9159;9160;9161;9162;9163;9164;9165;9166;9167;9168;9169;9170;9171;9172;9173;9174;9175;9176;9177;9178;9179;9180;9181;9182;9183;9184;9185;9186;9187;9188;9189;9190;9191;9192;9193;9194;9195;9196;9197;9198;9199;9200;9201;9202;9203;9204;9205;9206;9207;9208;9209;9210;9211;9212;9213;9214;9215;9216;9217;9218;9219;9220;9221;9222;9223;9224;9225;9226;9227;9228;9229;9230;9231;9232;9233;9234;9235;9236;9237;9238;9239;9240;9241;9242;9243;9244;9245;9246;9247;9248;9249;9250;9251;9252;9253;9254;9255;9256;9257	9247	1422	103	9606
DDDIAALVVDNGSGMCK	1	0	Acetyl (Protein N-term)	1820.7921	0.792064	926	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	1	0	0	13.6	1.57						1			1	1	2		1	40	3	1	26.919	26.919	2	1.6619E-27	18927	DP690-14	285.83	262.45			0.85664	0.99962	10.488	21	0	Median	2260800000	1214100000	1046699999.9999999	1892	926	1778	3752;3753;3754;3755;3756;3757;3758;3759;3760;3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776;3777;3778;3779;3780;3781;3782;3783;3784;3785;3786;3787;3788;3789;3790;3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801	9258;9259;9260;9261;9262;9263;9264;9265;9266;9267;9268;9269;9270;9271;9272;9273;9274;9275;9276;9277;9278;9279;9280;9281;9282;9283;9284;9285;9286;9287;9288;9289;9290;9291;9292;9293;9294;9295;9296;9297;9298;9299;9300;9301;9302;9303;9304;9305;9306;9307;9308;9309;9310;9311;9312;9313;9314;9315;9316;9317;9318;9319;9320;9321;9322;9323;9324;9325;9326;9327;9328;9329;9330;9331;9332;9333;9334;9335;9336;9337;9338;9339;9340;9341;9342;9343;9344;9345;9346;9347;9348	9272		88	9606
DDDIAALVVDNGSGMCK	1	0	Oxidation (M)	1794.7764	0.77641393	926	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	0	1	0	14	0														1			18.93	18.93	2	0.0011739	14180	DP690-14	98.337	76.942			0.97658	1.1889	NaN	1	0	Median	38618000	22309000	16309000	1893	926	1778	3802	9349;9350;9351	9350	1422	3	9606
DDDRTPGLHGDCDDDKYR	1	2	Unmodified	2148.8767	0.87667334	305	O95159	ZFPL1	Zinc finger protein-like 1	yes	yes	0	0	2	14	0														1			10.849	10.849	4	7.6523E-05	3211	DP690-14	122.5	104.18			0.60313	0.69844	NaN	1	0	Median	59423000	35646000	23776000	1894	305	1779	3803	9352;9353	9353		2	9606
DDEAAAVALSSLIHALDDLDMVAIVR	0	1	Oxidation (M)	2738.3797	0.37966024	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	1	0	11	0											1						29.062	29.062	3	8.4858E-06	26396	DP690-11	112.64	85.587			NaN	NaN	NaN	0	0	Median	721970	721970	0	1895	480	1780	3804	9354;9355	9354	592	2	9606
DDEENYLDLFSHK	1	0	Unmodified	1623.7053	0.70528113	1133	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	12	0												2					19.662	19.662	2;3	1.8233E-10	15322	DP690-12	231.42	231.42			0.83485	0.98474	3.9234	2	0	Median	170580000	95265000	75313000	1896	1133	1781	3805;3806	9356;9357;9358;9359;9360	9356		5	9606
DDFLGQVDVPLYPLPTENPR	0	1	Unmodified	2284.1376	0.1375627	764	P46934	NEDD4	E3 ubiquitin-protein ligase NEDD4	yes	yes	0	0	0	3	0			1														22.883	22.883	2	1.5307E-09	18470	DP690-3	199.33	199.33			0.65921	0.72102	NaN	1	0	Median	3208000	1675200	1532700	1897	764	1782	3807	9361;9362;9363;9364;9365;9366	9362		6	9606
DDGLFSGDPNWFPK	1	0	Unmodified	1593.71	0.70997257	690	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	7	0							1										22.227	22.227	2	0.00027328	17181	DP690-7	113.38	75.682			0.8008	0.87393	NaN	1	0	Median	15450000	8831200	6618300	1898	690	1783	3808	9367;9368;9369;9370	9369		4	9606
DDGSTLMEIDGDKGK	2	0	Unmodified	1579.7036	0.70356657	351	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	1	13	0													1				14.948	14.948	2	0.042407	8669	DP690-13	104.87	71.604			NaN	NaN	NaN	0	0	Median	8087600	8087600	0	1899	351	1784	3809	9371	9371		1	9606
DDGTGQLLLPLSDAR	0	1	Unmodified	1569.7999	0.79985021	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.707									1	2	1						20.469	20.469	2	6.7633E-16	15393	DP690-9	282.21	247.68			0.75811	0.91086	15.743	3	0	Median	329700000	175730000	153970000	1900	1319	1785	3810;3811;3812;3813	9372;9373;9374;9375;9376;9377;9378;9379;9380;9381;9382	9382		11	9606
DDGVFVQEVTQNSPAAR	0	1	Unmodified	1831.8701	0.87005504	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.75	0.829									2	1	1						18.08	18.08	2	1.5901E-12	13945	DP690-10	200.93	175.02			0.63504	0.78023	11.56	2	0	Median	179980000	114990000	64994000	1901	1145	1786	3814;3815;3816;3817	9383;9384;9385;9386;9387;9388;9389;9390;9391;9392	9384		10	9606
DDGVSIPGEYTSFLAPISSSK	1	0	Unmodified	2169.0477	0.047744639	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	4	0				1													22.319	22.319	2	0.00034849	17171	DP690-4	105.46	105.46			2.9152	3.1034	NaN	1	0	Median	1694800	480430	1214300	1902	111	1787	3818	9393;9394;9395;9396	9395		4	9606
DDIIENAPTTHTEEYSGEEK	1	0	Unmodified	2276.9921	0.99208025	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	4	0				3													14.232	14.232	2;3	2.6279E-20	7561	DP690-4	196.22	157.85			2.8138	3.0057	NaN	1	0	Median	53095000	14314000	38781000	1903	111	1788	3819;3820;3821	9397;9398;9399;9400;9401;9402	9401		6	9606
DDIQALDIFLANLPEAK	1	0	Unmodified	1884.9833	0.98329389	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								25.965	25.965	2	0.042392	21601	DP690-9	56.139	37.936			0.68018	0.75498	NaN	1	0	Median	542000	309090	232910	1904	1453	1789	3822	9403	9403		1	9606
DDKHGSYEDAVHSGALND	1	0	Unmodified	1928.8137	0.81366238	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	1	8	4				1								1					12.987	12.987	3	0.00022582	6152	DP690-12	99.915	99.915			1.114	1.2249	35.344	2	0	Median	213210000	102630000	110580000	1905	520	1790	3823;3824	9404;9405;9406;9407;9408;9409;9410;9411	9406		8	9606
DDMKADCILYYGFGDIFR	1	1	Oxidation (M)	2213.9762	0.97617637	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	1	1	12	0												1					23.004	23.004	3	0.005231	19506	DP690-12	64.83	49.576			0.7637	0.93038	NaN	1	0	Median	5571300	3008900	2562400	1906	751	1791	3825	9412;9413	9412	1106	2	9606
DDNMFQIGK	1	0	Oxidation (M)	1082.4703	0.47025958	884	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	1	0	16	0																1	14.567	14.567	2	0.039296	8109	DP690-16	75.738	55.113			0.94701	1.1011	NaN	1	0	Median	25842000	13304000	12538000	1907	884	1792	3826	9414	9414	1343	1	9606
DDPALATYYGSLFK	1	0	Unmodified	1559.7508	0.75077476	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	13	0													1				21.853	21.853	2	1.8993E-06	17651	DP690-13	189.57	153.19			0.81953	0.92013	NaN	1	0	Median	163870000	88389000	75482000	1908	1597	1793	3827	9415;9416;9417;9418	9415		4	9606
DDPHACYSTVFDK	1	0	Unmodified	1553.6457	0.64565776	37	CON__P02769			yes	yes	0	0	0	4	0				1													14.791	14.791	2	0.016175	8275	DP690-4	100.04	67.514		+	NaN	NaN	NaN	0	0	Median	7909800	7909800	0	1909	37	1794	3828	9419;9420;9421	9421		3	
DDPLTNLNTAFDVAEK	1	0	Unmodified	1761.8421	0.84210896	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	4.6	3.2			4								1						21.469	21.469	2	4.3817E-07	18593	DP690-11	189.3	162.59			1.3599	1.6449	NaN	1	0	Median	63087000	28986000	34101000	1910	476	1795	3829;3830;3831;3832;3833	9422;9423;9424;9425;9426;9427;9428;9429;9430	9423		9	9606
DDPSKPVHLTAFLGYK	2	0	Unmodified	1786.9254	0.92538508	698	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	9	3.27					1				1				1				17.125	17.125	3	1.778E-07	11656	DP690-13	162.64	139.79			0.79554	0.94708	10.09	3	0	Median	151160000	84013000	67143000	1911	698	1796	3834;3835;3836	9431;9432;9433;9434;9435;9436;9437;9438	9431		8	9606
DDSIEGIYDTLK	1	0	Unmodified	1367.6456	0.64564098	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	3	0			1														20.705	20.705	2	0.017988	16074	DP690-3	72.2	48.828			0.92802	0.97505	NaN	1	0	Median	6783700	2698300	4085400	1912	574	1797	3837	9439;9440	9440		2	9606
DDSLDLSPQGR	0	1	Unmodified	1201.5575	0.55749468	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	2	0		1															15.159	15.159	2	0.0023869	7952	DP690-2	94.692	58.748			0.98757	1.0306	NaN	1	0	Median	5161900	2356400	2805600	1913	1282	1798	3838	9441;9442;9443	9441		3	9606
DDWLVSWVQSYCR	0	1	Unmodified	1712.7617	0.76169057	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									2								24.117	24.117	2	0.00097662	19589	DP690-9	103.31	67.789			0.91208	1.1192	NaN	1	0	Median	3256000	2212100	1043800	1914	1046	1799	3839;3840	9444;9445;9446;9447	9446		4	9606
DDWWNLLLK	1	0	Unmodified	1201.6132	0.61315906	2504	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	11	0											1						24.705	24.705	2	0.070208	22543	DP690-11	87.181	48.888			NaN	NaN	NaN	0	0	Median	0	0	0	1915	2504	1800	3841	9448	9448		1	9606
DEAAYGELR	0	1	Unmodified	1022.4669	0.46688876	2384	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	7.5	0.5							1	1									13.827	13.827	2	0.00078396	6878	DP690-7	133.86	78.332			1.2446	1.4076	56.526	2	0	Median	99516000	40084000	59432000	1916	2384	1801	3842;3843	9449;9450;9451;9452;9453;9454;9455;9456	9451		8	9606
DEDGSTLFR	0	1	Unmodified	1038.4618	0.46180338	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	2	0		1															15.723	15.723	2	0.030143	8647	DP690-2	73.665	28.943			0.81613	0.83354	NaN	1	0	Median	2927600	1667600	1260000	1917	2065	1802	3844	9457	9457		1	9606
DEDPYCVACFGELFAPK	1	0	Unmodified	2016.8597	0.85974963	1232	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	10	4						1								1			23.154	23.154	2	0.0029719	19597	DP690-14	79.089	61.877			0.57294	0.67495	NaN	1	0	Median	5203000	3609900	1593100	1918	1232	1803	3845;3846	9458;9459	9458		2	9606
DEEVHAGLGELLR	0	1	Unmodified	1436.726	0.72595699	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	5	0					1												17.457	17.457	3	6.6495E-05	11132	DP690-5	123.28	109.41			1.1259	1.1767	NaN	1	0	Median	40374000	23585000	16789000	1919	819	1804	3847	9460;9461;9462;9463	9460		4	9606
DEFRPNLSHTGR	0	2	Unmodified	1427.6906	0.69057454	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	1	8	4				1								1					11.563	11.563	3	0.00049019	4220	DP690-12	103.46	70.404			0.83496	0.91008	11.189	2	0	Median	205510000	116170000	89342000	1920	1200	1805	3848;3849	9464;9465;9466;9467;9468;9469;9470;9471	9464		8	9606
DEHNEERDVMLAK	1	1	Unmodified	1584.7202	0.72021968	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	11	0											1						11.891	11.891	3	0.00014473	4868	DP690-11	111.52	84.813			1.1533	1.3342	NaN	1	0	Median	116360000	48909000	67455000	1921	652	1806	3850	9472;9473	9473		2	9606
DEHNEERDVMLAK	1	1	Oxidation (M)	1600.7151	0.71513431	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	1	7	4			1								1						10.624	10.624	3	0.021439	3102	DP690-11	90.913	56.527			0.93133	1.0329	NaN	1	0	Median	18963000	10840000	8123200	1922	652	1806	3851;3852	9474;9475	9474	911	1	9606
DEILEWESR	0	1	Unmodified	1175.5459	0.54586736	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	4	0				1													18.136	18.136	2	0.019256	12582	DP690-4	80.219	43.458			0.65922	0.76376	NaN	1	0	Median	5190700	3047500	2143200	1923	1227	1807	3853	9476	9476		1	9606
DEILPTTPISEQK	1	0	Unmodified	1469.7613	0.76133944	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	15.5	0.5															1	1	16.811	16.811	2	0.00017637	11050	DP690-15	161.51	122.49			1.3563	1.5348	91.754	2	0	Median	204260000	117580000	86679000	1924	569	1808	3854;3855	9477;9478;9479;9480;9481;9482	9480		6	9606
DEKIEELEALLQEAR	1	1	Unmodified	1784.9156	0.91560825	310	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	1	11	0											1						21.802	21.802	3	0.00033456	19044	DP690-11	101.04	83.959			0.56018	0.66243	NaN	1	0	Median	11067000	8067100	3000000	1925	310	1809	3856	9483;9484	9483		2	9606
DELHIVEAEAMNYEGSPIK	1	0	Oxidation (M)	2160.0045	0.0044996155	397	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	12	4.32						1								1		1	19.531	19.531	3	6.7406E-10	14127	DP690-16	148.52	117.41			0.7309	0.8592	8.1636	2	0	Median	173940000	97420000	76516000	1926	397	1810	3857;3858;3859	9485;9486;9487;9488;9489;9490;9491;9492	9490	424	8	9606
DELHIVEAEAMNYEGSPIK	1	0	Unmodified	2144.0096	0.0095849934	397	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	14	0														1			20.387	20.387	3	6.0037E-12	16094	DP690-14	171.52	144.69			0.73988	0.8665	NaN	1	0	Median	184490000	106100000	78395000	1927	397	1810	3860	9493;9494;9495;9496;9497	9493		5	9606
DELTLEGIK	1	0	Unmodified	1016.539	0.53899107	696	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	13	0													1				17.359	17.359	2	0.005495	12000	DP690-13	97.798	42.294			0.89319	1.0339	NaN	1	0	Median	46498000	26593000	19905000	1928	696	1811	3861	9498;9499;9500	9499		3	9606
DENSVELTMAEGPYK	1	0	Oxidation (M)	1697.7454	0.74543138	1288	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	1	0	3	0			1														15.678	15.678	2	0.0032419	9573	DP690-3	136.01	91.401			NaN	NaN	NaN	0	0	Median	0	0	0	1929	1288	1812	3862	9501	9501	1974	1	9606
DEPDWESLIFLAR	0	1	Unmodified	1589.7726	0.77257283	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	11	0											1						25.082	25.082	2	0.071555	22973	DP690-11	83.862	48.638			NaN	NaN	NaN	0	0	Median	0	0	0	1930	813	1813	3863	9502	9502		1	9606
DEPIHILNVAIK	1	0	Unmodified	1360.7715	0.77145062	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															18.266	18.266	2	5.331E-05	11599	DP690-2	163.38	115.68			0.97946	0.98559	NaN	1	0	Median	9122500	3959300	5163200	1931	1179	1814	3864	9503;9504;9505;9506	9505		4	9606
DEPSVAAMVYPFTGDHK	1	0	Unmodified	1862.8509	0.85089951	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	11	0											2						19.664	19.664	2	0.0024216	16140	DP690-11	118.73	87.545			NaN	NaN	NaN	0	0	Median	19993000	9672600	10320000	1932	873	1815	3865;3866	9507;9508;9509	9507		3	9606
DEPSVAAMVYPFTGDHK	1	0	Oxidation (M)	1878.8458	0.84581413	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	1	0	3	0			1														16.968	16.968	2	0.017464	11225	DP690-3	92.151	57.191			NaN	NaN	NaN	0	0	Median	5180200	0	5180200	1933	873	1815	3867	9510;9511	9510	1320	2	9606
DEPTGEVLSLVGK	1	0	Unmodified	1342.698	0.6980109	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							19.53	19.53	2	0.0036052	15989	DP690-10	88.155	66.469			0.69785	0.86331	NaN	1	0	Median	68724000	31175000	37549000	1934	269	1816	3868	9512;9513	9512		2	9606
DEQLLTNVLETLR	0	1	Unmodified	1542.8253	0.82533668	2304	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	11	0											2						23.831	23.831	2	0.00016996	21533	DP690-11	158.08	158.08			0.80039	0.98247	NaN	1	0	Median	15329000	8275500	7053600	1935	2304	1817	3869;3870	9514;9515;9516	9514		3	9606
DEQPSGSVETGFEDK	1	0	Unmodified	1623.69	0.69002499	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	12	0												1					14.499	14.499	2	5.3126E-10	8215	DP690-12	207.95	174.76			0.82579	0.98453	NaN	1	0	Median	55083000	27767000	27316000	1936	2240	1818	3871	9517;9518;9519;9520	9518		4	9606
DESSPYAAMLAAQDVAQR	0	1	Oxidation (M)	1937.8789	0.87890517	971	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	0	16	0																1	17.021	17.021	2	3.425E-09	11026	DP690-16	145.52	107.53			0.81709	0.94911	NaN	1	0	Median	22857000	13459000	9397900	1937	971	1819	3872	9521;9522	9521	1490	2	9606
DETEFYLGK	1	0	Unmodified	1100.5026	0.50260556	523	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	12	4								1								1	17.079	17.079	2	0.014306	10384	DP690-8	85.212	53.908			0.96774	1.1244	NaN	1	0	Median	37535000	2660200	34875000	1938	523	1820	3873;3874	9523;9524;9525;9526	9526		4	9606
DETEFYLGKR	1	1	Unmodified	1256.6037	0.60371659	523	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	1	16	0																1	14.765	14.765	2	0.00019078	8261	DP690-16	202.17	106.35			1.3312	1.4434	NaN	1	0	Median	51956000	23293000	28663000	1939	523	1821	3875	9527;9528;9529;9530	9530		4	9606
DETNYGIPQR	0	1	Unmodified	1191.552	0.55201537	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	11.2	3.96						1			1					1		1	14.057	14.057	2	0.0001409	7527	DP690-14	137.13	107.97			0.81601	0.88663	7.4509	3	0	Plateau	606540000	350110000	256440000	1940	1022	1822	3876;3877;3878;3879	9531;9532;9533;9534;9535;9536;9537;9538;9539;9540;9541	9533		11	9606
DETVSDCSPHIANIGR	0	1	Unmodified	1769.8003	0.80026092	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	14	0														1			14.324	14.324	2	0.017961	7959	DP690-14	108.72	55.927			NaN	NaN	NaN	0	0	Median	0	0	0	1941	769	1823	3880	9542	9542		1	9606
DFAVLEDHTLAHSLQEQEIEHHLASNVQR	0	1	Unmodified	3365.6389	0.6388799	1603	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	yes	yes	0	0	0	14	0														1			17.831	17.831	5	1.7229E-05	12750	DP690-14	94.087	84.63			0.95518	1.1301	NaN	1	0	Median	127060000	59531000	67530000	1942	1603	1824	3881	9543;9544	9543		2	9606
DFDDEKILIQHQK	2	0	Unmodified	1627.8206	0.82058566	184	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	1	12	0												1					14.394	14.394	3	4.2717E-05	8139	DP690-12	138.42	118.33			0.89644	0.99256	NaN	1	0	Median	272640000	140290000	132340000	1943	184	1825	3882	9545	9545		1	9606
DFDFESANAQFNKEEIDR	1	1	Unmodified	2173.9552	0.95524124	1683	Q8ND56	LSM14A	Protein LSM14 homolog A	yes	yes	0	0	1	12	0												1					18.071	18.071	3	0.050557	13244	DP690-12	75.445	62.407			0.35951	0.45222	NaN	1	0	Median	16195000	11956000	4239800	1944	1683	1826	3883	9546	9546		0	9606
DFEEYPEHR	0	1	Unmodified	1220.5098	0.5098162	128	O14980	XPO1	Exportin-1	yes	yes	0	0	0	3	0			1														12.664	12.664	2	0.026188	5553	DP690-3	98.629	75.849			NaN	NaN	NaN	0	0	Median	5420200	5420200	0	1945	128	1827	3884	9547	9547		1	9606
DFEIIDNHDYSYTVK	1	0	Unmodified	1857.8421	0.84210896	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							17.862	17.862	2	7.3279E-17	13639	DP690-10	246.63	194.14			0.99235	1.0996	9.9302	2	0	Median	174180000	86994000	87184000	1946	1270	1828	3885;3886;3887	9548;9549;9550;9551;9552;9553;9554;9555;9556;9557;9558	9550		11	9606
DFFAQQQHLTPDK	1	0	Unmodified	1573.7525	0.75250609	2126	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	4	0				1													15.228	15.228	2	9.5264E-05	8866	DP690-4	148.13	92.042			0.85826	0.92261	NaN	1	0	Median	5462200	2784000	2678200	1947	2126	1829	3888	9559;9560;9561;9562	9561		4	9606
DFFLANASR	0	1	Unmodified	1039.5087	0.50869399	405	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	3	0			1														17.93	17.93	2	0.041072	12541	DP690-3	70.256	46.733			0.95701	1.0834	NaN	1	0	Median	10208000	4999400	5208100	1948	405	1830	3889	9563;9564	9564		2	9606
DFFLGELEK	1	0	Unmodified	1096.5441	0.54407645	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	2	0		1															20.846	20.846	2	0.043086	14434	DP690-2	69.628	23.655			1.2054	1.1861	NaN	1	0	Median	1813300	717980	1095400	1949	283	1831	3890	9565;9566	9565		2	9606
DFFQSYGNVVELR	0	1	Unmodified	1572.7573	0.75725712	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	12	0												2					21.144	21.144	2	0.00018329	17293	DP690-12	154.15	123.33			0.85788	1.0301	NaN	1	0	Median	19466000	9694500	9771100	1950	1196	1832	3891;3892	9567;9568;9569;9570	9568		4	9606
DFGGAVQDYFK	1	0	Unmodified	1245.5666	0.5666028	2015	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	0	0	4	0				1													19.819	19.819	2	0.0013248	14540	DP690-4	103.88	103.88			0.85828	0.9284	NaN	1	0	Median	8265200	4529800	3735400	1951	2015	1833	3893	9571;9572	9572		2	9606
DFGLLVFVR	0	1	Unmodified	1064.6019	0.6018661	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							23.386	23.386	2	0.00085673	18696	DP690-9	128.57	112.09			0.87553	1.0736	6.252	2	0	Median	48631000	25227000	23404000	1952	1046	1834	3894;3895	9573;9574;9575;9576;9577;9578;9579	9576		7	9606
DFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSSKPR	1	1	Unmodified	3581.5237	0.52371131	2160	Q9HB90	RRAGC	Ras-related GTP-binding protein C	yes	yes	0	0	1	13	0													1				17.892	17.892	3	1.0139E-06	12708	DP690-13	79.559	69.412			NaN	NaN	NaN	0	0	Median	7154700	7154700	0	1953	2160	1835	3896	9580;9581	9580		2	9606
DFHILFVPR	0	1	Unmodified	1142.6237	0.62366417	1820	Q96AX1	VPS33A	Vacuolar protein sorting-associated protein 33A	yes	yes	0	0	0	12	0												1					19.441	19.441	2	0.006054	15025	DP690-12	121.99	74.03			NaN	NaN	NaN	0	0	Median	4618800	4618800	0	1954	1820	1836	3897	9582;9583	9583		2	9606
DFIATLEAEAFDDVVGETVGK	1	0	Unmodified	2225.074	0.073959389	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10	0.816									1	1	1						28.197	28.197	2	9.5287E-30	26375	DP690-10	290.71	224.69			0.86861	1.0529	27.144	3	0	Plateau	12016000	6242500	5774000	1955	604	1837	3898;3899;3900	9584;9585;9586;9587;9588;9589;9590;9591;9592;9593;9594;9595	9587		12	9606
DFIIQTGDPTGTGR	0	1	Unmodified	1476.7209	0.72087161	1733	Q8WUA2	PPIL4	Peptidyl-prolyl cis-trans isomerase-like 4	yes	yes	0	0	0	12	0												1					17.351	17.351	2	0.0024934	12291	DP690-12	89.9	57.15			0.88979	1.061	NaN	1	0	Median	31855000	17918000	13937000	1956	1733	1838	3901	9596;9597;9598	9596		3	9606
DFILPISDVR	0	1	Unmodified	1173.6394	0.63937381	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	6	3			1						1								20.84	20.84	2	0.0085656	15938	DP690-9	85.67	29.16			0.82753	1.0315	NaN	1	0	Median	3354400	1948300	1406100	1957	1504	1839	3902;3903	9599;9600	9600		2	9606
DFLAGGIAAAISK	1	0	Unmodified	1232.6765	0.6764876	473	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	0	11.8	2.32									1	1	1			1	1		20.819	20.819	2	0.00081906	15840	DP690-9	105.13	69.226			0.83928	1.0526	3.456	4	0	Linear	380850000	211730000	169110000	1958	473	1840	3904;3905;3906;3907;3908	9601;9602;9603;9604;9605;9606;9607;9608;9609;9610;9611;9612;9613;9614;9615;9616;9617;9618	9615		18	9606
DFLAGGVAAAISK	1	0	Unmodified	1218.6608	0.66083754	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	12	2.86							1		1	2	1		1	1	2	1	19.495	19.495	2	3.6268E-05	15947	DP690-10	125.23	93.468			0.85309	0.92693	29.793	9	0	Median	2296300000	1231200000	1065099999.9999999	1959	381	1841	3909;3910;3911;3912;3913;3914;3915;3916;3917;3918	9619;9620;9621;9622;9623;9624;9625;9626;9627;9628;9629;9630;9631;9632;9633;9634;9635;9636;9637;9638;9639;9640;9641;9642;9643;9644;9645;9646;9647;9648;9649;9650;9651;9652	9619		34	9606
DFLAGGVAAAISKTAVAPIER	1	1	Unmodified	2056.1317	0.13168946	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	1	15	0															1		20.869	20.869	3	0.00042423	16163	DP690-15	89.028	72.449			0.69433	0.81243	NaN	1	0	Median	2662900	1633000	1029900	1960	381	1842	3919	9653;9654;9655	9653		3	9606
DFLDEYIFLAVGR	0	1	Unmodified	1556.7875	0.78749461	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	10	1									1		1						26.162	26.162	2	4.9221E-05	24155	DP690-11	148.32	122.38			0.9388	1.1131	8.9669	2	0	Median	5176600	2664000	2512600	1961	96	1843	3920;3921	9656;9657;9658;9659;9660;9661;9662	9657		7	9606
DFLLKPELLR	1	1	Unmodified	1242.7336	0.73360855	63;1237	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	no	no	0	0	1	11.7	1.89									1				2				19.038	19.038	2;3	6.7175E-05	14155	DP690-13	142.36	106.82			0.80592	0.82996	2.2529	3	0	Plateau	678370000	373570000	304800000	1962	63;1237	1844	3922;3923;3924	9663;9664;9665;9666;9667;9668;9669;9670;9671	9667		9	9606
DFLTHVSAR	0	1	Unmodified	1044.5352	0.53524309	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	3	0			1														14.039	14.039	2	0.043181	7397	DP690-3	69.598	29.33			0.85207	0.95689	NaN	1	0	Median	33515000	17129000	16386000	1963	134	1845	3925	9672;9673	9673		2	9606
DFLTPPLLSVR	0	1	Unmodified	1256.7129	0.71287311	339	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	11	0											1						22.019	22.019	2	0.00017788	19313	DP690-11	123.86	100.54			0.73263	0.87425	NaN	1	0	Median	35623000	20441000	15182000	1964	339	1846	3926	9674;9675	9674		2	9606
DFMATNPEHLEILK	1	0	Oxidation (M)	1672.8131	0.81305744	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	1	0	3	0			1														17.044	17.044	2	0.0026854	11354	DP690-3	125.72	76.722			NaN	NaN	NaN	0	0	Median	6526400	0	6526400	1965	2061	1847	3927	9676	9676	2577	1	9606
DFMATNPEHLEILKK	2	0	Oxidation (M)	1800.908	0.90802046	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	1	1	3	0			1														15.145	15.145	3	0.06739	8826	DP690-3	65.219	38.07			NaN	NaN	NaN	0	0	Median	13964000	0	13964000	1966	2061	1848	3928	9677	9677	2577	1	9606
DFMIQGGDPTGTGR	0	1	Oxidation (M)	1466.646	0.64599211	2464	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	1	0	16	0																1	15.264	15.264	2	0.047275	8938	DP690-16	65.241	41.719			0.82656	0.96131	NaN	1	0	Median	15303000	7946900	7356500	1967	2464	1849	3929	9678	9678	2908	1	9606
DFMYVSQDPK	1	0	Oxidation (M)	1244.5383	0.53833914	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	1	0	13	0													1				14.374	14.374	2	0.0021834	7837	DP690-13	106.68	87.42			0.82958	0.96031	NaN	1	0	Median	45981000	27036000	18945000	1968	894	1850	3930	9679;9680	9680	1368	2	9606
DFMYVSQDPKDQLLLGPTYATPK	2	0	Unmodified	2626.2989	0.29889072	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	1	13	0													1				20.078	20.078	3	0.0028836	15613	DP690-13	61.437	40.236			0.46131	0.52506	NaN	1	0	Median	22642000	14607000	8035100	1969	894	1851	3931	9681	9681		1	9606
DFNVPLSISR	0	1	Unmodified	1146.6033	0.60332266	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	13	0													2				18.855	18.855	2	0.010482	14108	DP690-13	114.51	59.143			NaN	NaN	NaN	0	0	Median	37629000	0	37629000	1970	2194	1852	3932;3933	9682;9683	9683		2	9606
DFPLNDLLSATELDK	1	0	Unmodified	1689.8461	0.8461317	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									3								24.296	24.296	2	0.0043857	19892	DP690-9	79.633	63.69			0.79608	0.93608	NaN	1	0	Median	1425600	849210	576340	1971	1264	1853	3934;3935;3936	9684;9685;9686	9684		3	9606
DFPLNDLLSATELDKIR	1	1	Unmodified	1959.0313	0.031306713	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	8	3.03		1							2	2							23.115	23.115	2;3	1.7793E-06	18507	DP690-9	162.7	135.68			1.0504	1.1224	57.065	4	0	Median	27489000	10993000	16495000	1972	1264	1854	3937;3938;3939;3940;3941	9687;9688;9689;9690;9691;9692;9693;9694;9695;9696;9697;9698;9699	9698		13	9606
DFPYEEDSRPR	0	2	Unmodified	1409.6212	0.62115757	1876	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	1	13	0													1				13.84	13.84	2	0.019318	7275	DP690-13	88.177	62.603			0.84992	0.97588	NaN	1	0	Median	31308000	15792000	15516000	1973	1876	1855	3942	9700	9700		1	9606
DFQAISDVIGNK	1	0	Unmodified	1305.6565	0.65648044	2372	Q9UKL0	RCOR1	REST corepressor 1	yes	yes	0	0	0	12	0												1					19.433	19.433	2	0.00047287	15145	DP690-12	112.83	91.088			0.85107	1.023	NaN	1	0	Median	22685000	13354000	9330200	1974	2372	1856	3943	9701;9702	9702		2	9606
DFQQYLPLVIEPLIK	1	0	Unmodified	1815.0182	0.018222832	208	O60518	RANBP6	Ran-binding protein 6	yes	yes	0	0	0	11	0											1						25.354	25.354	2	0.00049244	23267	DP690-11	107.39	107.39			1.0865	1.2792	NaN	1	0	Median	2704500	1141700	1562700	1975	208	1857	3944	9703;9704;9705;9706;9707	9704		5	9606
DFSAFINLVEFCR	0	1	Unmodified	1616.7657	0.76571331	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								25.483	25.483	2	0.00015628	21109	DP690-9	149.23	126.31			0.65263	0.77542	NaN	1	0	Median	1387900	738050	649890	1976	1046	1858	3945	9708;9709	9709		2	9606
DFSALESQLQDTQELLQEENR	0	1	Unmodified	2492.1667	0.16669058	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	7.67	4.03		1								1	1						23.623	23.623	2	4.5373000000000005E-167	21427	DP690-10	448.81	422.1			0.95888	1.2004	7.4633	3	0	Median	49711000	24845000	24866000	1977	668	1859	3946;3947;3948	9710;9711;9712;9713;9714;9715;9716;9717;9718;9719;9720;9721;9722;9723;9724;9725;9726	9711		17	9606
DFSAPLTISR	0	1	Unmodified	1105.5768	0.57677356	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	0	14	0														1			17.723	17.723	2	0.00014087	12567	DP690-14	137.14	82.93			0.81014	0.91468	NaN	1	0	Median	323090000	177830000	145260000	1978	820	1860	3949	9727;9728;9729;9730	9729		4	9606
DFSPSGIFGAFQR	0	1	Unmodified	1427.6834	0.68336389	904	P56134	ATP5J2	ATP synthase subunit f, mitochondrial	yes	yes	0	0	0	12.5	3.5									1							1	22.45	22.45	2	0.00025376	17354	DP690-16	116.52	86.708			0.76642	0.90856	23.026	2	0	Median	8253300	4794100	3459300	1979	904	1861	3950;3951	9731;9732;9733;9734;9735;9736;9737	9733		7	9606
DFSWSPGGNIIAFWVPEDKDIPAR	1	1	Unmodified	2716.3286	0.32855137	902	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	1	11	0											2						23.873	23.873	3	0.0084101	21570	DP690-11	83.245	26.998			NaN	NaN	NaN	0	0	Median	2255400	2255400	0	1980	902	1862	3952;3953	9738;9739	9738		2	9606
DFSYNYFGFK	1	0	Unmodified	1286.5608	0.56078914	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	3	0			1														21.066	21.066	2	0.00014609	16428	DP690-3	136.27	66.456			0.97208	1.0299	NaN	1	0	Median	10281000	5313500	4967200	1981	574	1863	3954	9740;9741;9742;9743	9743		4	9606
DFTVASPAEFVTR	0	1	Unmodified	1438.7092	0.70924429	1179	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	0	0	2	0		2															19.812	19.812	2	0.00029073	13328	DP690-2	146.71	91.143			NaN	NaN	NaN	0	0	Median	6175700	2896300	3279400	1982	1179	1864	3955;3956	9744;9745;9746	9745		3	9606
DFTVSALHGDMDQK	1	0	Oxidation (M)	1578.6984	0.69842161	1266	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	1	0	13	0													1				14.536	14.536	2	0.014719	8102	DP690-13	103.91	59.6			NaN	NaN	NaN	0	0	Median	0	0	0	1983	1266	1865	3957	9747	9747	1934	1	9606
DFTVSALHGDMDQKER	1	1	Oxidation (M)	1863.8421	0.84212573	1266	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	1	1	13	0													1				13.406	13.406	3	0.00036518	6496	DP690-13	94.551	73.458			1.1034	1.3703	NaN	1	0	Median	23274000	11993000	11281000	1984	1266	1866	3958	9748;9749	9748	1934	2	9606
DFTVSAMHGDMDQK	1	0	2 Oxidation (M)	1612.6498	0.64975686	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	2	0	13	0													1				11.454	11.454	2	0.00020172	3975	DP690-13	120.55	92.779			1.0806	1.2561	NaN	1	0	Median	31828000	14964000	16864000	1985	927	1867	3959	9750;9751;9752;9753;9754;9755;9756;9757	9752	1431;1432	8	9606
DFTVSAMHGDMDQK	1	0	Oxidation (M)	1596.6548	0.65484224	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	1	0	13	0													1				13.024	13.024	2	0.00042681	6016	DP690-13	114.24	78.296			1.1547	1.3437	NaN	1	0	Median	28837000	14433000	14404000	1986	927	1867	3960	9758;9759;9760;9761	9760	1431;1432	4	9606
DFTVSAMHGDMDQKER	1	1	2 Oxidation (M)	1897.7935	0.79346098	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	2	1	13	0													1				10.621	10.621	3	0.00072889	2892	DP690-13	84.14	65.351			0.99708	1.0905	NaN	1	0	Median	167700000	82879000	84825000	1987	927	1868	3961	9762;9763;9764;9765	9762	1431;1432	4	9606
DFTVSAMHGDMDQKER	1	1	Oxidation (M)	1881.7985	0.79854636	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	1	1	13	0													1				11.982	11.982	3	0.00034002	4618	DP690-13	96.163	75.07			0.96715	1.1639	NaN	1	0	Median	37932000	19395000	18537000	1988	927	1868	3962	9766;9767;9768;9769	9767	1431;1432	4	9606
DFVAEPMGEKPVGSLAGIGEVLGK	2	0	Oxidation (M)	2415.2356	0.23556218	262	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	1	1	16	0																1	19.666	19.666	3	0.0035761	14326	DP690-16	89.462	63.851			NaN	NaN	NaN	0	0	Median	11107000	0	11107000	1989	262	1869	3963	9770;9771	9770	263	2	9606
DFVASIDATYAK	1	0	Unmodified	1299.6347	0.63468237	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	5	3.46			3								1						18.58	18.58	2	0.0042402	13339	DP690-3	116.77	79.29			0.82807	1.0077	NaN	1	0	Median	43165000	21338000	21827000	1990	581	1870	3964;3965;3966;3967	9772;9773;9774;9775	9774		4	9606
DFVEDDTTHG	0	0	Unmodified	1134.4465	0.44654725	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							13.69	13.69	2	0.040369	7556	DP690-10	88.942	65.419			NaN	NaN	NaN	0	0	Median	0	0	0	1991	2424	1871	3968	9776;9777	9776		2	9606
DFVSEAYLLTLGK	1	0	Unmodified	1454.7657	0.76569654	1849	Q96F07	CYFIP2	Cytoplasmic FMR1-interacting protein 2	yes	yes	0	0	0	5.67	3.77			2								1						23.492	23.492	2	0.00012201	19021	DP690-3	122.69	0			0.86787	1.0717	28.789	3	0	Plateau	21445000	10337000	11107000	1992	1849	1872	3969;3970;3971	9778;9779;9780;9781;9782;9783;9784;9785	9783		8	9606
DFYAAHPSADAANGSNEDRGEVADEDKR	1	2	Unmodified	3006.2976	0.29759818	659	P35226	BMI1	Polycomb complex protein BMI-1	yes	yes	0	0	2	14	0														1			12.388	12.388	4	4.1846E-05	5210	DP690-14	107.56	90.69			0.59248	0.67263	NaN	1	0	Median	150010000	93306000	56700000	1993	659	1873	3972	9786;9787	9787		2	9606
DFYPLTFFTAR	0	1	Unmodified	1376.6765	0.6764876	730	P42694	HELZ	Probable helicase with zinc finger domain	yes	yes	0	0	0	10	0										1							23.832	23.832	2	0.0016121	21761	DP690-10	103.7	84.385			0.71103	0.88158	NaN	1	0	Median	6800400	4168100	2632300	1994	730	1874	3973	9788	9788		1	9606
DFYVAFQDLPTR	0	1	Unmodified	1470.7143	0.71432967	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	11	0											1						21.179	21.179	2	0.0053632	18028	DP690-11	113.47	74.758			NaN	NaN	NaN	0	0	Median	3506400	3506400	0	1995	1280	1875	3974	9789	9789		1	9606
DGALTLLLDEFENMSVTR	0	1	Oxidation (M)	2038.9881	0.98812127	350	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	1	0	12	0												2					25.919	25.919	2	0.022872	22222	DP690-12	99.011	59.863			NaN	NaN	NaN	0	0	Median	0	0	0	1996	350	1876	3975;3976	9790;9791	9790	359	2	9606
DGATILTHAYSR	0	1	Unmodified	1303.6521	0.65206377	1265	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	14	0														1			14.208	14.208	2	0.0029836	7758	DP690-14	90.827	50.979			1.1524	1.382	NaN	1	0	Median	91463000	48791000	42673000	1997	1265	1877	3977	9792;9793	9793		2	9606
DGAVNGPSVVGDQTPIEPQTSIER	0	1	Unmodified	2465.2034	0.20341043	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	3	0			1														17.282	17.282	2	0.010417	11681	DP690-3	88.551	52.332			NaN	NaN	NaN	0	0	Median	0	0	0	1998	788	1878	3978	9794	9794		1	9606
DGAWGAFR	0	1	Unmodified	878.4035	0.40350064	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															16.882	16.882	2	0.020896	10061	DP690-2	110.34	51.555			NaN	NaN	NaN	0	0	Median	16790000	16790000	0	1999	789	1879	3979	9795;9796;9797	9797		3	9606
DGCLYEVAYQAEAGWFSQR	0	1	Unmodified	2248.9848	0.98476723	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10	0										1							23.543	23.543	2	0.0072442	21388	DP690-10	113.59	89.171			NaN	NaN	NaN	0	0	Median	0	0	0	2000	272	1880	3980	9798	9798		1	9606
DGDMHSSSLTVECSK	1	0	Oxidation (M)	1667.6767	0.67669989	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	1	0	10	0										1							10.858	10.858	3	0.0098486	3523	DP690-10	65.038	58.145			0.89964	1.1085	NaN	1	0	Median	52711000	31272000	21439000	2001	1167	1881	3981	9799	9799	1816	1	9606
DGEDQTQDTELVETRPAGDGTFQK	1	1	Unmodified	2636.1838	0.1837972	454;372	P10321;P04439;P01893	HLA-C;HLA-A;HLA-H	HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, A-3 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H	no	no	0	0	1	11.3	3.77						1								2			15.243	15.243	3	9.535999999999999E-46	9057	DP690-14	239.87	225.67			0.71751	0.80846	5.7119	2	0	Median	198280000	118590000	79691000	2002	454;372	1882	3982;3983;3984	9800;9801;9802;9803;9804;9805;9806;9807;9808;9809;9810;9811;9812	9803		13	9606
DGEEAGAYDGPR	0	1	Unmodified	1235.5055	0.50545911	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	4	0				1													12.339	12.339	2	8.3067E-05	5038	DP690-4	125.68	74.347			0.89552	1.0444	NaN	1	0	Median	14676000	8515300	6160800	2003	623	1883	3985	9813;9814	9814		2	9606
DGELPVEDDIDLSDVELDDLGKDEL	1	0	Unmodified	2757.2604	0.26037577	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	1	7.67	3.77					2								1				24.499	24.499	2	2.3887E-20	19780	DP690-5	187.75	169.08			0.78674	0.87586	NaN	1	0	Median	9869100	8207300	1661800	2004	1318	1884	3986;3987;3988	9815;9816;9817;9818;9819;9820;9821;9822	9820		8	9606
DGFIDKEDLHDMLASLGK	2	0	Oxidation (M)	2018.9619	0.96190652	123	O14950;P19105;P24844	MYL12B;MYL12A;MYL9	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9	yes	no	0	1	1	16	0																1	17.72	17.72	3	0.0010353	12001	DP690-16	76.526	60.033			0.73153	0.83687	NaN	1	0	Median	13346000	7656400	5689300	2005	123	1885	3989	9823;9824	9824	134	2	9606
DGHNLISLLEVLSGDSLPR	0	1	Unmodified	2034.0746	0.074568512	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.8	0.748									2	2	1						25.526	25.526	2;3	2.7875E-10	21051	DP690-9	155.24	155.24			0.76914	0.96002	8.0019	4	0	Median	62064000	33438000	28626000	2006	1319	1886	3990;3991;3992;3993;3994	9825;9826;9827;9828;9829;9830;9831;9832;9833;9834;9835;9836;9837;9838;9839;9840;9841	9837		17	9606
DGHNLISLLEVLSGIK	1	0	Unmodified	1706.9567	0.95668521	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								25.837	25.837	3	0.026648	21424	DP690-9	52.52	41.665			0.61605	0.72592	NaN	1	0	Median	1477100	969590	507530	2007	2411	1887	3995	9842	9842		1	9606
DGIDDESYEAIFKPVMSK	2	0	Oxidation (M)	2058.9456	0.94558775	1222	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	1	1	8	4				1								1					18.942	18.942	3	0.013987	13462	DP690-4	56.039	56.039			0.63082	0.68564	8.0221	2	0	Median	52902000	30685000	22216000	2008	1222	1888	3996;3997	9843;9844	9844	1864	2	9606
DGIDDESYEAIFKPVMSK	2	0	Unmodified	2042.9507	0.95067313	1222	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	1	12	0												1					20.157	20.157	3	0.0022924	16123	DP690-12	72.932	56.248			0.55793	0.6574	NaN	1	0	Median	18415000	11349000	7065400	2009	1222	1888	3998	9845;9846	9845		2	9606
DGIDDESYGQIFKPIISK	2	0	Unmodified	2024.0102	0.01023692	1788	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	1	12	0												2					19.755	19.755	2;3	2.551E-06	15544	DP690-12	127.2	103.67			0.74789	0.85995	11.181	2	0	Median	125960000	66010000	59948000	2010	1788	1889	3999;4000	9847;9848;9849;9850;9851	9848		5	9606
DGIILCELINK	1	0	Unmodified	1286.6904	0.69042311	1330	Q15417	CNN3	Calponin-3	yes	yes	0	0	0	12.5	3.84						1								2		1	21.265	21.265	2	0.00015354	15136	DP690-6	155.58	105.87			0.77753	0.86236	7.2282	3	0	Median	565060000	306940000	258120000	2011	1330	1890	4001;4002;4003;4004	9852;9853;9854;9855;9856;9857;9858;9859;9860;9861;9862;9863;9864;9865	9864		14	9606
DGLAAQAEIEALQK	1	0	Unmodified	1455.7569	0.75692277	2550				yes	yes	0	0	0	12	0												1					10.353	10.353	2	0.0025989	2648	DP690-12	89.561	43.963	+		0.89157	1.079	NaN	1	0	Median	13772000	7719900	6052600	2012	2550	1891	4005	9866	9866		1	9606
DGLAFCAILHR	0	1	Unmodified	1271.6445	0.64447597	1621;1650	Q8IY33;Q8N3F8	MICALL2;MICALL1	MICAL-like protein 2;MICAL-like protein 1	no	no	0	0	0	11	0											1						18.429	18.429	2	0.0073863	14399	DP690-11	107.47	63.83			NaN	NaN	NaN	0	0	Median	22840000	22840000	0	2013	1621;1650	1892	4006	9867	9867		1	9606
DGLDYILGALESGK	1	0	Unmodified	1449.7351	0.73512469	1413	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	11	0											1						24.849	24.849	2	0.0036149	22751	DP690-11	124.21	80.91			NaN	NaN	NaN	0	0	Median	3385000	0	3385000	2014	1413	1893	4007	9868	9868		1	9606
DGLGGLPDIVR	0	1	Unmodified	1110.6033	0.60332266	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	3	0			1														19.607	19.607	2	0.038679	14591	DP690-3	89.029	19.217			NaN	NaN	NaN	0	0	Median	4367500	4367500	0	2015	746	1894	4008	9869	9869		1	9606
DGLLENQTPEFFQDVCKPK	2	0	Unmodified	2264.0783	0.078333261	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		1															19.173	19.173	3	0.000244	12561	DP690-2	108.96	90.019			0.7556	0.78441	NaN	1	0	Median	48139000	26577000	21562000	2016	789	1895	4009	9870;9871;9872;9873	9870		4	9606
DGLLPENTFIVGYAR	0	1	Unmodified	1663.857	0.85697116	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	6	3.46				3								1					22.049	22.049	2	1.0591E-06	16344	DP690-4	183.85	149.16			0.80806	0.92975	3.7714	4	0	Median	102070000	54017000	48057000	2017	469	1896	4010;4011;4012;4013	9874;9875;9876;9877;9878;9879;9880;9881;9882;9883;9884;9885;9886;9887;9888	9880		15	9606
DGLNDDDFEPYLSPQAR	0	1	Unmodified	1950.8595	0.85954994	2497	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	12	0												1					19.798	19.798	2	2.6644E-28	15667	DP690-12	296.28	254.59			0.68803	0.81548	NaN	1	0	Median	43381000	26073000	17309000	2018	2497	1897	4014	9889;9890;9891;9892	9891		4	9606
DGLSCLIVLLQR	0	1	Unmodified	1385.7701	0.77007041	2122	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	10	0										1							24.534	24.534	2	0.016206	22560	DP690-10	102.06	68.684			NaN	NaN	NaN	0	0	Median	0	0	0	2019	2122	1898	4015	9893	9893		1	9606
DGLSEAAAQSR	0	1	Unmodified	1103.5207	0.52071524	1178	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	4	0				1													12.124	12.124	2	8.7281E-05	4763	DP690-4	129.85	86.082			0.80465	0.89158	NaN	1	0	Median	41454000	23251000	18204000	2020	1178	1899	4016	9894;9895;9896;9897	9894		4	9606
DGMAFNALIHK	1	0	Oxidation (M)	1231.6019	0.60194245	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										1							15.06	15.06	2	0.070411	9582	DP690-10	64.711	44.571			0.89214	1.0966	NaN	1	0	Median	40287000	22434000	17853000	2021	1080	1900	4017	9898	9898		1	9606
DGMDNQGGYGSVGR	0	1	Oxidation (M)	1427.5736	0.57355545	638	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	1	0	14	0														1			11.45	11.45	2	3.635E-05	4043	DP690-14	160.18	145.88			0.78021	0.96057	NaN	1	0	Median	13468000	6649000	6819100	2022	638	1901	4018	9899;9900;9901;9902	9902	886	4	9606
DGMDNQGGYGSVGR	0	1	Unmodified	1411.5786	0.57864083	638	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	14	0														2			13.137	13.137	2	7.5759E-08	6286	DP690-14	174.57	115.33			NaN	NaN	NaN	0	0	Median	39826000	22488000	17338000	2023	638	1901	4019;4020	9903;9904;9905;9906;9907	9904		5	9606
DGNASGTTLLEALDCILPPTRPTDK	1	1	Unmodified	2654.3221	0.32214536	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	11.6	3.32					1								3	1			23.366	23.366	2;3	7.5296E-15	19503	DP690-13	169.15	130.95			0.73136	0.84418	12.518	4	0	Median	153180000	86720000	66456000	2024	1031	1902	4021;4022;4023;4024;4025	9908;9909;9910;9911;9912;9913;9914;9915;9916;9917;9918;9919	9913		12	9606
DGNASGTTLLEALDCILPPTRPTDKPLR	1	2	Unmodified	3020.5601	0.56008422	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	2	10.5	3.16					2	2			2	2		1	6	2			23.204	23.204	3;4	3.6185E-08	17903	DP690-13	137.43	113.15			0.59198	0.67249	8.1366	16	0	Median	3667899999.9999995	2166600000	1501299999.9999998	2025	1031	1903	4026;4027;4028;4029;4030;4031;4032;4033;4034;4035;4036;4037;4038;4039;4040;4041;4042	9920;9921;9922;9923;9924;9925;9926;9927;9928;9929;9930;9931;9932;9933;9934;9935;9936;9937;9938;9939;9940;9941;9942;9943;9944;9945;9946;9947;9948;9949;9950;9951;9952;9953;9954;9955;9956;9957;9958;9959;9960;9961;9962;9963;9964;9965	9926		46	9606
DGNVLLHEMQIQHPTASLIAK	1	0	Oxidation (M)	2330.2053	0.20526511	702	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	1	0	8	4				1								1					15.782	15.782	3	3.3099E-07	9580	DP690-4	141.08	141.08			1.1818	1.3378	35.054	2	0	Median	77288000	32246000	45042000	2026	702	1904	4043;4044	9966;9967;9968;9969;9970;9971;9972;9973	9970	1029	8	9606
DGNVLLHEMQIQHPTASLIAK	1	0	Unmodified	2314.2104	0.21035049	702	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	4	0				1													17.91	17.91	3	0.0088189	12249	DP690-4	84.159	54.065			NaN	NaN	NaN	0	0	Median	0	0	0	2027	702	1904	4045	9974	9974		1	9606
DGPLNMILDDGGDLTNLIHTK	1	0	Oxidation (M)	2267.1104	0.11036167	571	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	1	0	5	0					1												22.716	22.716	3	1.9371E-05	17753	DP690-5	123.6	123.6			0.87526	0.87392	NaN	1	0	Median	33247000	17105000	16142000	2028	571	1905	4046	9975;9976;9977	9976	759	3	9606
DGPSLLVVEQVR	0	1	Unmodified	1310.7194	0.71941505	1645	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	12	0												1					18.865	18.865	2	0.0023168	14380	DP690-12	92.538	50.2			1.3203	1.59	NaN	1	0	Median	17803000	7798300	10005000	2029	1645	1906	4047	9978	9978		1	9606
DGPYITAEEAVAVYTTTVHWLESR	0	1	Unmodified	2707.313	0.31296088	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										2							26.688	26.688	3	0.00023331	24988	DP690-10	102.19	87.144			0.86131	1.0197	NaN	1	0	Median	4177300	1955600	2221600	2030	1492	1907	4048;4049	9979;9980;9981;9982;9983;9984	9980		6	9606
DGQAMLWDLNEGK	1	0	Oxidation (M)	1491.6664	0.6663932	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	1	0	14	0														1			18.032	18.032	2	3.0784E-05	13064	DP690-14	181.4	141.85			0.92859	1.1127	NaN	1	0	Median	118770000	59892000	58875000	2031	1022	1908	4050	9985;9986	9986	1550	2	9606
DGQILPVPNVVVR	0	1	Unmodified	1404.8089	0.80889876	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	10.8	3.53				1					1			2	1		1		19.626	19.626	2	4.6936E-05	14131	DP690-9	142.98	125.09			0.73231	0.83335	8.061	6	0	Median	979510000	548650000	430860000	2032	2298	1909	4051;4052;4053;4054;4055;4056	9987;9988;9989;9990;9991;9992;9993;9994;9995;9996;9997;9998;9999;10000;10001;10002;10003	10001		17	9606
DGQLIATGSADASIK	1	0	Unmodified	1445.7362	0.73618733	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	13	0													1				15.404	15.404	2	1.1317E-05	9277	DP690-13	127.71	102.65			0.77539	0.88598	NaN	1	0	Median	104030000	57063000	46962000	2033	1114	1910	4057	10004;10005;10006;10007	10007		4	9606
DGQVINETSQHHDDLE	0	0	Unmodified	1835.7922	0.79219865	424	P08670	VIM	Vimentin	yes	yes	0	0	0	11.3	3.42				2							1	3	4	1	1		13.04	13.04	2;3	1.5009E-35	5683	DP690-13	213.63	187.57			NaN	NaN	NaN	0	0	Median	0	0	0	2034	424	1911	4058;4059;4060;4061;4062;4063;4064;4065;4066;4067;4068;4069	10008;10009;10010;10011;10012;10013;10014;10015;10016;10017;10018;10019;10020;10021;10022;10023;10024;10025;10026;10027;10028;10029	10014		22	9606
DGQYFEPVVPLPDLVEVSSGEENEQVVFSHR	0	1	Unmodified	3500.6736	0.67359365	808;16;446	P49792;O14715;Q99666;A6NKT7;P0DJD0	RANBP2;RGPD8;RGPD5;RGPD3;RGPD1	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 1	no	no	0	0	0	9	0									1								22.955	22.955	3	0.03282	18330	DP690-9	50.322	34.399			NaN	NaN	NaN	0	0	Median	1662300	1662300	0	2035	808;16;446	1912	4070	10030;10031	10030		2	9606
DGSAFEDGLR	0	1	Unmodified	1065.4727	0.47270242	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	10.5	0.866									1		3						15.476	15.476	2	0.0033041	9111	DP690-9	93.649	60.098			0.83485	1.0115	NaN	1	0	Median	292990000	278490000	14497000	2036	897	1913	4071;4072;4073;4074	10032;10033;10034;10035;10036;10037;10038	10038		7	9606
DGSCGVAYVVQEPGDYEVSVK	1	0	Unmodified	2257.0209	0.020877961	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	0.816									1	1	1						18.489	18.489	2	1.2344E-48	14453	DP690-11	296.49	253.09			0.79894	0.84379	12.088	3	0	Plateau	771980000	441170000	330800000	2037	549	1914	4075;4076;4077	10039;10040;10041;10042;10043;10044;10045;10046;10047;10048	10044		10	9606
DGSCGVSYVVQEPGDYEVSIK	1	0	Unmodified	2287.0314	0.031442647	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	9.33	0.471									2	1							18.826	18.826	2	2.2039000000000002E-41	15132	DP690-10	251.91	220.25			0.86541	1.064	4.3859	2	0	Median	108900000	63309000	45594000	2038	1270	1915	4078;4079;4080	10049;10050;10051;10052;10053;10054;10055	10051		7	9606
DGSCSVEYIPYEAGTYSLNVTYGGHQVPGSPFK	1	0	Unmodified	3578.63	0.63001428	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.5	0.5									1	1							20.741	20.741	3	9.56E-12	17790	DP690-10	138.95	133.08			0.72751	0.89611	12.663	2	0	Median	229160000	134660000	94495000	2039	549	1916	4081;4082	10056;10057;10058;10059;10060;10061;10062;10063;10064	10057		9	9606
DGSLANNPYPGDVTK	1	0	Unmodified	1546.7264	0.72635092	1439	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	10.5	0.5										1	1						14.756	14.756	2	1.8653E-05	9000	DP690-11	166.7	127.92			0.83554	1.0219	15.018	2	0	Median	121840000	56652000	65189000	2040	1439	1917	4083;4084	10065;10066;10067;10068	10067		4	9606
DGSTATCVLAVDNILYIANLGDSR	0	1	Unmodified	2537.2432	0.24316676	2087	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	13	0													1				25.664	25.664	2	0.012354	21994	DP690-13	115.31	75.245			NaN	NaN	NaN	0	0	Median	0	0	0	2041	2087	1918	4085	10069	10069		1	9606
DGTCTVTYLPTLPGDYSILVK	1	0	Unmodified	2312.161	0.16100026	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							22.794	22.794	2	7.7473E-05	20489	DP690-10	120.92	120.92			0.61676	0.75561	NaN	1	0	Median	29949000	18158000	11790000	2042	250	1919	4086	10070;10071;10072;10073;10074	10073		5	9606
DGTESYLTVSSHPNSLMK	1	0	Unmodified	1964.915	0.91495633	871	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	12	0												1					16.323	16.323	2	0.0016282	10882	DP690-12	118.24	77.472			NaN	NaN	NaN	0	0	Median	5863400	0	5863400	2043	871	1920	4087	10075	10075		1	9606
DGTGVVEFVR	0	1	Unmodified	1077.5455	0.54547343	1136	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	15	0															1		16.828	16.828	2	0.00052985	11187	DP690-15	117.81	84.999			0.88669	0.98356	NaN	1	0	Median	90464000	49083000	41381000	2044	1136	1921	4088	10076;10077	10077		2	9606
DGTHFGDVLNFLR	0	1	Unmodified	1489.7314	0.73137672	1898	Q96MP8	KCTD7	BTB/POZ domain-containing protein KCTD7	yes	yes	0	0	0	6.5	0.5						1	1										21.351	21.351	3	9.9194E-06	16163	DP690-7	134.49	97.163			0.65559	0.74457	12.009	2	0	Median	18845000	10938000	7906800	2045	1898	1922	4089;4090	10078;10079;10080;10081;10082;10083;10084;10085	10085		8	9606
DGTILCTLMNK	1	0	Oxidation (M)	1280.6105	0.61045823	1934	Q99439	CNN2	Calponin-2	yes	yes	0	1	0	6	0						1											17.141	17.141	2	0.0059811	10557	DP690-6	90.906	74.188			1.0285	1.1833	NaN	1	0	Median	12329000	5728700	6599800	2046	1934	1923	4091	10086;10087	10087	2463	2	9606
DGTLKPGDTIIEPTSGNTGIGLALAAAVR	1	1	Unmodified	2807.5029	0.50288692	666	P35520	CBS	Cystathionine beta-synthase	yes	yes	0	0	1	4	0				1													21.067	21.067	3	3.8915E-09	15904	DP690-4	143.08	133.36			0.89312	1.0186	NaN	1	0	Median	2271500	1280900	990610	2047	666	1924	4092	10088;10089;10090;10091	10088		4	9606
DGTPAPGYPSYQQYH	0	0	Unmodified	1679.7216	0.72159989	225	O60830	TIMM17B	Mitochondrial import inner membrane translocase subunit Tim17-B	yes	yes	0	0	0	16	0																1	15.289	15.289	2	1.4377E-07	8873	DP690-16	172.56	146.44			NaN	NaN	NaN	0	0	Median	0	0	0	2048	225	1925	4093	10092;10093	10093		2	9606
DGTQCLSGSSDGTIR	0	1	Unmodified	1552.6787	0.6787488	1708	Q8TAF3	WDR48	WD repeat-containing protein 48	yes	yes	0	0	0	11	0											2						13.287	13.287	2	0.00063386	6837	DP690-11	167.2	122.04			NaN	NaN	NaN	0	0	Median	0	0	0	2049	1708	1926	4094;4095	10094;10095	10094		2	9606
DGTYAVTYVPLTAGMYTLTMK	1	0	2 Oxidation (M)	2327.1065	0.10652185	250	O75369	FLNB	Filamin-B	yes	yes	0	2	0	10	0										1							20.563	20.563	2	3.2886E-15	17408	DP690-10	176.4	154.62			0.82773	1.0174	NaN	1	0	Median	41404000	23813000	17592000	2050	250	1927	4096	10096;10097;10098	10096	238;239	3	9606
DGTYAVTYVPLTAGMYTLTMK	1	0	Oxidation (M)	2311.1116	0.11160722	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	10	0										3							21.901	21.901	2	6.8891E-19	20067	DP690-10	188.12	173.52			0.88918	1.0795	NaN	1	0	Median	33700000	14495000	19205000	2051	250	1927	4097;4098;4099	10099;10100;10101;10102	10100	238;239	4	9606
DGVIEASINHEK	1	0	Unmodified	1310.6466	0.64664404	168	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	4	0				1													13.103	13.103	2	0.0056974	6061	DP690-4	83.862	52.44			1.5181	1.6619	NaN	1	0	Median	12596000	5210100	7385500	2052	168	1928	4100	10103	10103		1	9606
DGVLTLANNVTPAK	1	0	Unmodified	1411.7671	0.76709352	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10	0										1							17.625	17.625	2	3.988E-05	13256	DP690-10	150.46	103.61			0.87668	0.97351	NaN	1	0	Median	611850000	324620000	287230000	2053	604	1929	4101	10104;10105;10106;10107	10104		4	9606
DGVPGLNIEELIEK	1	0	Unmodified	1524.8035	0.80353861	1718	Q8TCG1	KIAA1524	Protein CIP2A	yes	yes	0	0	0	3	0			1														22.525	22.525	2	0.0050651	18059	DP690-3	81.625	53.761			0.85145	0.89268	NaN	1	0	Median	4625100	2272700	2352400	2054	1718	1930	4102	10108;10109;10110;10111	10108		4	9606
DGVVEITGKHEER	1	1	Unmodified	1467.7318	0.73177065	374	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	1	7	0							1										10.666	10.666	3	5.7379E-05	3164	DP690-7	154.67	118.14			NaN	NaN	NaN	0	0	Median	17759000	17759000	0	2055	374	1931	4103	10112;10113	10113		2	9606
DGVWKPTLVILR	1	1	Unmodified	1395.8238	0.82382054	1786	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	yes	yes	0	0	1	14	0														1			19.097	19.097	3	2.6207E-05	14394	DP690-14	134.38	117.17			0.77137	0.97004	NaN	1	0	Median	27014000	15354000	11660000	2056	1786	1932	4104	10114;10115	10114		2	9606
DGWPAMGIHGDK	1	0	Oxidation (M)	1298.5714	0.5713706	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	0	12	0												2					12.99	12.99	2;3	0.0028867	6072	DP690-12	97.597	77.6			0.83872	0.99088	9.7945	2	0	Median	145600000	73163000	72441000	2057	517	1933	4105;4106	10116;10117;10118;10119;10120;10121	10119	652	6	9606
DGWPAMGIHGDK	1	0	Unmodified	1282.5765	0.57645598	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	12	0												2					15.336	15.336	2;3	0.01791	9552	DP690-12	59.116	39.458			0.81238	0.95241	13.266	2	0	Median	163360000	90024000	73336000	2058	517	1933	4107;4108	10122;10123;10124;10125;10126	10125		5	9606
DGYIHYGQTVK	1	0	Unmodified	1279.6197	0.619701	1125	Q06330	RBPJ	Recombining binding protein suppressor of hairless	yes	yes	0	0	0	12	0												1					13.046	13.046	2	0.0013667	6212	DP690-12	137.98	73.556			NaN	NaN	NaN	0	0	Median	64025000	64025000	0	2059	1125	1934	4109	10127;10128	10127		2	9606
DHAISLSEPR	0	1	Unmodified	1123.5622	0.56218613	2495	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	5.5	3.5		1							1								12.476	12.476	2	0.00089052	5133	DP690-9	109.48	87.485			0.74739	0.84647	35.712	2	0	Median	15492000	8563300	6929200	2060	2495	1935	4110;4111	10129;10130;10131;10132	10131		4	9606
DHASIQMNVAEVDK	1	0	Oxidation (M)	1571.725	0.72497071	1020	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	1	0	13.3	3.77								1								2	12.618	12.618	2;3	6.0331E-09	5402	DP690-16	202.29	142.13			0.90756	1.0267	10.099	2	0	Median	104730000	55577000	49157000	2061	1020	1936	4112;4113;4114	10133;10134;10135;10136;10137;10138;10139	10135	1545	7	9606
DHASIQMNVAEVDKVTGR	1	1	Oxidation (M)	1984.9636	0.96363785	1020	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	1	1	16	0																3	13.784	13.784	3;4	5.0438E-07	7742	DP690-16	139.74	121.54			0.89157	0.90444	8.5516	3	0	Plateau	382740000	203500000	179240000	2062	1020	1937	4115;4116;4117	10140;10141;10142;10143;10144;10145;10146	10141	1545	7	9606
DHAVVVGVYRPPPK	1	1	Unmodified	1532.8463	0.8463469	558	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	14	0														1			12.047	12.047	3	1.579E-05	4792	DP690-14	136.01	117.2			0.6652	0.77339	NaN	1	0	Median	121060000	73228000	47828000	2063	558	1938	4118	10147;10148	10147		2	9606
DHEDYDPQTVR	0	1	Unmodified	1373.5848	0.58477206	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	2.5	0.5		1	1														11.475	11.475	2	0.0071069	3556	DP690-2	108.98	88.691			NaN	NaN	NaN	0	0	Median	6638300	0	6638300	2064	1803	1939	4119;4120	10149;10150	10149		2	9606
DHGLEVLGLVR	0	1	Unmodified	1206.6721	0.67207093	1983	Q9BRJ7;Q96DE0	NUDT16L1;NUDT16	Protein syndesmos;U8 snoRNA-decapping enzyme	yes	no	0	0	0	13	3.51							1	1							4	1	18.371	18.371	2;3	5.8338E-05	12939	DP690-15	117.71	96.918			0.91966	1.0301	17.655	7	0	Median	551680000	291360000	260310000	2065	1983	1940	4121;4122;4123;4124;4125;4126;4127	10151;10152;10153;10154;10155;10156;10157;10158;10159;10160;10161;10162;10163;10164;10165;10166;10167;10168;10169	10158		18	9606
DHGLLIYHIPQVEPR	0	1	Unmodified	1785.9526	0.95260288	2514	Q9Y676	MRPS18B	28S ribosomal protein S18b, mitochondrial	yes	yes	0	0	0	14	0														1			17.172	17.172	3	0.031745	11885	DP690-14	72.615	48.784			NaN	NaN	NaN	0	0	Median	0	0	0	2066	2514	1941	4128	10170	10170		1	9606
DHGVNSFLVYMAFK	1	0	Oxidation (M)	1642.7814	0.78136338	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	1	0	4	0				1													18.899	18.899	3	0.0023649	13448	DP690-4	79.614	65.261			1.0168	1.0999	NaN	1	0	Median	8287600	4473400	3814300	2067	1359	1942	4129	10171	10171	2102	1	9606
DHIMEIFSTYGK	1	0	Oxidation (M)	1455.6704	0.67041595	1324	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	yes	yes	0	1	0	9	0									1								16.767	16.767	2	0.0016596	10828	DP690-9	105.4	70.676			0.79885	1.0177	NaN	1	0	Median	8345200	4181600	4163600	2068	1324	1943	4130	10172	10172	2049	1	9606
DHIPITDSPVVVQQHMLPPK	1	0	Oxidation (M)	2266.178	0.17798773	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	1	0	10	0										2							14.571	14.571	3	0.0029862	8878	DP690-10	102.03	54.295			NaN	NaN	NaN	0	0	Median	36484000	36484000	0	2069	272	1944	4131;4132	10173;10174	10174	287	2	9606
DHIVLTVLPDQDQSDEAQEK	1	0	Unmodified	2279.0917	0.091734718	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	13	0													2				16.893	16.893	2;3	9.568299999999999E-40	11355	DP690-13	243.49	173.4			0.79027	0.88403	NaN	1	0	Median	187810000	108510000	79300000	2070	1597	1945	4133;4134	10175;10176;10177;10178;10179;10180;10181	10180		7	9606
DHLYGTLDPNTR	0	1	Unmodified	1400.6684	0.66844211	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								13.989	13.989	2	8.0603E-05	7107	DP690-9	130.94	99.006			1.0279	1.2833	NaN	1	0	Median	16743000	7282700	9460600	2071	1264	1946	4135;4136	10182;10183;10184;10185;10186;10187	10185		6	9606
DHPFGFVAVPTK	1	0	Unmodified	1313.6768	0.67682195	1024	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	0	0	16	0																1	16.663	16.663	2	0.00079617	10594	DP690-16	107.55	44.972			0.63044	0.69588	NaN	1	0	Median	87813000	52786000	35027000	2072	1024	1947	4137	10188;10189;10190	10189		3	9606
DHPLPEVAHVK	1	0	Unmodified	1240.6564	0.65642086	481	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	16	0																1	11.143	11.143	3	0.0006172	3659	DP690-16	94.465	74.003			0.66878	0.78314	NaN	1	0	Median	13451000	7568500	5883000	2073	481	1948	4138	10191;10192;10193;10194	10193		4	9606
DHQEVETEGPESADTGDKSESPDEANVGK	2	0	Unmodified	3056.2967	0.29665471	1702	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	1	4	0				1													12.105	12.105	4	1.9609E-05	4774	DP690-4	83.216	83.216			0.62914	0.64686	NaN	1	0	Median	6747300	3506000	3241400	2074	1702	1949	4139	10195;10196;10197;10198	10196		4	9606
DHQTITIQEMPEK	1	0	Oxidation (M)	1584.7454	0.7453718	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	1	0	7	4			2								2						12.4	12.4	2;3	8.9944E-05	5427	DP690-11	174.23	147.44			0.69184	0.82644	1.6081	3	0	Plateau	45816000	27200000	18616000	2075	581	1950	4140;4141;4142;4143	10199;10200;10201;10202;10203;10204;10205;10206;10207;10208;10209;10210	10199	762	12	9606
DHQTITIQEMPEK	1	0	Unmodified	1568.7505	0.75045718	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	7	4			1								1						14.066	14.066	2	1.1073E-107	8024	DP690-11	322.07	254.37			NaN	NaN	NaN	0	0	Median	31774000	31774000	0	2076	581	1950	4144;4145	10211;10212;10213	10211		3	9606
DHQTITIQEMPEKAPAGQLPR	1	1	Unmodified	2359.1954	0.1954287	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	11	0											1						15.048	15.048	3	2.0977E-19	9479	DP690-11	186.06	171.89			0.60605	0.73781	NaN	1	0	Median	56071000	31529000	24542000	2077	581	1951	4146	10214;10215;10216	10214		3	9606
DHRDNLEFFLAGIGR	0	2	Unmodified	1758.8802	0.88016622	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2.5	0.5		2	2														19.994	19.994	3	0.000145	13371	DP690-2	109.84	78.182			0.93051	0.92939	NaN	1	0	Median	10175000	5778200	4396400	2078	789	1952	4147;4148;4149;4150	10217;10218;10219;10220;10221;10222;10223;10224	10218		8	9606
DHSGTLGPEEFK	1	0	Unmodified	1315.6044	0.60444487	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	11	0											1						13.558	13.558	2	0.04973	7383	DP690-11	60.167	43.59			0.83709	1.0199	NaN	1	0	Median	33773000	19985000	13788000	2079	476	1953	4151	10225	10225		1	9606
DHVFEDSYR	0	1	Unmodified	1166.4993	0.49925152	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1.5	0.5	1	1															12.82	12.82	2	0.00077549	5116	DP690-2	134.48	97.777			1.2229	1.2406	13.143	2	0	Median	9632200	4603600	5028700	2080	1555	1954	4152;4153	10226;10227;10228;10229;10230;10231	10230		6	9606
DHVFLCEGEEPK	1	0	Unmodified	1458.6449	0.64492948	2139	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	11	4							1								1		13.788	13.788	2	4.3364E-05	7102	DP690-15	128.03	104.89			0.87662	0.9927	24.408	2	0	Median	31265000	17988000	13277000	2081	2139	1955	4154;4155	10232;10233;10234;10235;10236;10237;10238;10239;10240	10232		9	9606
DHVVSDFSEHGSLK	1	0	Unmodified	1555.7267	0.72668527	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						12.613	12.613	3	0.0017279	5896	DP690-11	71.279	50.03			0.90963	1.1033	NaN	1	0	Median	74112000	37795000	36317000	2082	891	1956	4156	10241;10242;10243	10241		3	9606
DHYSNGFCTVYAK	1	0	Unmodified	1560.6667	0.66672755	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	10	4						1								1			14.017	14.017	2	1.9882E-10	7487	DP690-14	266.93	235.43			0.91111	1.048	6.5854	2	0	Median	187870000	99362000	88509000	2083	864	1957	4157;4158	10244;10245;10246;10247;10248;10249;10250;10251;10252	10247		9	9606
DIADVTAVAEAILPK	1	0	Unmodified	1524.8399	0.83992412	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	9.5	0.5									1	1							24.824	24.824	2	3.4148E-05	22840	DP690-10	126.12	98.474			0.70582	0.85768	5.3242	2	0	Median	16842000	10526000	6316100	2084	1891	1958	4159;4160	10253;10254;10255;10256;10257;10258	10254		6	9606
DIALGVFDVVVTDPSCPASVLK	1	0	Unmodified	2301.1926	0.19263474	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	10	0.816									1	1	1						20.699	20.699	2	0.00087971	22558	DP690-10	130.06	90.548			0.7772	0.9396	NaN	1	0	Median	46034000	25017000	21018000	2085	1167	1959	4161;4162;4163	10259;10260;10261	10259		3	9606
DIALSLPQLPR	0	1	Unmodified	1221.7081	0.70812208	2268	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	12	0												1					20.728	20.728	2	8.9475E-05	16744	DP690-12	176.44	144.91			0.67073	0.80288	NaN	1	0	Median	25996000	15115000	10880000	2086	2268	1960	4164	10262;10263;10264	10262		3	9606
DIDAFWLQR	0	1	Unmodified	1162.5771	0.57710791	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	9.5	0.5									1	1							21.226	21.226	2	0.00039628	18465	DP690-10	155.51	124.28			0.87174	1.0902	3.4063	2	0	Median	39559000	21403000	18156000	2087	269	1961	4165;4166	10265;10266;10267	10265		3	9606
DIDDDLEGEVTEECGK	1	0	Unmodified	1822.7415	0.74146822	2348	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	12	0												1					18.283	18.283	2	1.2355E-22	13553	DP690-12	260.57	241.95			0.94355	1.1245	NaN	1	0	Median	49361000	26621000	22740000	2088	2348	1962	4167	10268;10269;10270;10271;10272;10273	10270		6	9606
DIDEVSSLLR	0	1	Unmodified	1145.5928	0.59281755	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	4	0				1													19.715	19.715	2	5.2174E-05	14318	DP690-4	170.24	136.44			1.4884	1.6601	NaN	1	0	Median	36233000	15354000	20878000	2089	826	1963	4168	10274;10275;10276;10277;10278	10275		5	9606
DIDGHMVNLDK	1	0	Oxidation (M)	1271.5816	0.58160094	686	P36969	GPX4	Phospholipid hydroperoxide glutathione peroxidase, mitochondrial	yes	yes	0	1	0	16	0																1	12.653	12.653	2	0.0052947	5480	DP690-16	111.86	65.393			NaN	NaN	NaN	0	0	Median	7650000	7650000	0	2090	686	1964	4169	10279;10280	10280	989	2	9606
DIDGHMVNLDKYR	1	1	Oxidation (M)	1590.746	0.7460405	686	P36969	GPX4	Phospholipid hydroperoxide glutathione peroxidase, mitochondrial	yes	yes	0	1	1	15.5	0.5															1	1	13.539	13.539	3	7.2833E-05	6599	DP690-16	119.21	91.873			0.83762	0.9252	7.3037	2	0	Median	120410000	60949000	59458000	2091	686	1965	4170;4171	10281;10282;10283	10283	989	3	9606
DIDIHEVR	0	1	Unmodified	995.50361	0.50360861	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	8.33	3.77			1								2						13.02	13.02	2	0.025258	6490	DP690-11	133.6	72.918			0.97805	1.0298	NaN	1	0	Median	113930000	54806000	59125000	2092	1078	1966	4172;4173;4174	10284;10285;10286	10284		2	9606
DIDISSPEFK	1	0	Unmodified	1149.5554	0.55536941	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								17.309	17.309	2	0.0049643	11492	DP690-9	90.709	62.885			0.6007	0.74735	NaN	1	0	Median	23393000	13321000	10073000	2093	1145	1967	4175	10287;10288;10289;10290	10287		4	9606
DIEAQTQKPEPPESAEK	2	0	Unmodified	1895.9113	0.91125116	1480	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	1	11	0											2						11.733	11.733	2;3	1.6202E-35	4636	DP690-11	237.59	170.44			0.80191	0.92609	NaN	1	0	Median	95649000	54116000	41532000	2094	1480	1968	4176;4177	10291;10292;10293;10294;10295;10296	10296		6	9606
DIEGFMEENQTK	1	0	Oxidation (M)	1455.6188	0.61877431	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	1	0	9	0									1								14.53	14.53	2	0.0049475	7875	DP690-9	90.827	79.191			0.74112	0.94447	NaN	1	0	Median	8611600	5456800	3154700	2095	2411	1969	4178	10297;10298;10299	10297	2832	3	9606
DIELSPEAQAK	1	0	Unmodified	1199.6034	0.60338224	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											1						14.598	14.598	2	0.01231	8795	DP690-11	107.21	55.76			NaN	NaN	NaN	0	0	Median	0	0	0	2096	1504	1970	4179	10300	10300		1	9606
DIELVMSQANVSR	0	1	Unmodified	1460.7293	0.72932781	59	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	0	0	14	0														1			18.146	18.146	2	1.2851E-05	13174	DP690-14	185.96	18.872			0.97971	1.1875	NaN	1	0	Median	37028000	18115000	18914000	2097	59	1971	4180	10301	10301		1	9606
DIELVMSQANVSR	0	1	Oxidation (M)	1476.7242	0.72424243	59	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	1	0	6	0						1											15.609	15.609	2	0.0050906	8881	DP690-6	108.37	63.947			NaN	NaN	NaN	0	0	Median	2198700	0	2198700	2098	59	1971	4181	10302;10303	10303	63	2	9606
DIENQYETQITQIEHEVSSSGQEVQSSAK	1	0	Unmodified	3263.5066	0.5065879	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	7.6	4.27	1	1			1	1	1	1	1	1		1				1	21.329	21.329	3	2.4648E-44	16363	DP690-9	214.08	175.54		+	0.50776	0.62278	NaN	1	0	Median	220750000	207150000	13598000	2099	667	1972	4182;4183;4184;4185;4186;4187;4188;4189;4190;4191	10304;10305;10306;10307;10308;10309;10310;10311;10312;10313;10314;10315;10316;10317;10318;10319;10320;10321;10322;10323;10324;10325;10326;10327;10328;10329;10330;10331;10332;10333	10331		30	9606
DIENQYETQITQIEHEVSSSGQEVQSSAKEVTQLR	1	1	Unmodified	3989.909	0.90902591	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	5	0					1												22.175	22.175	4	0.039527	17062	DP690-5	48.088	34.425		+	NaN	NaN	NaN	0	0	Median	6629600	6629600	0	2100	667	1973	4192	10334	10334		1	9606
DIENYIQDGKDDYKK	3	0	Unmodified	1842.8636	0.86357268	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	2	10	0										1							14.646	14.646	3	0.049281	9031	DP690-10	81.311	51.956			NaN	NaN	NaN	0	0	Median	96967000	96967000	0	2101	1794	1974	4193	10335	10335		1	9606
DIEQIAEFLEQSVK	1	0	Unmodified	1647.8356	0.83556702	532	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	11	0											1						26.156	26.156	2	2.6175E-05	24212	DP690-11	126.76	126.76			0.79144	0.92895	NaN	1	0	Median	2504000	1334200	1169800	2102	532	1975	4194	10336;10337;10338	10337		3	9606
DIEREDIEFICK	1	1	Unmodified	1565.7396	0.73955814	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	1	4	0				1													16.951	16.951	3	0.007643	11115	DP690-4	71.806	52.483			1.4159	1.6148	NaN	1	0	Median	7756500	3209100	4547400	2103	827	1976	4195	10339	10339		1	9606
DIFGGLVLLK	1	0	Unmodified	1073.6485	0.64848194	1487	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	yes	yes	0	0	0	10.5	1.5									1			1					23.188	23.188	2	0.049975	19700	DP690-12	64.265	28.909			0.71682	0.85888	3.072	2	0	Median	8368300	4845800	3522500	2104	1487	1977	4196;4197	10340;10341	10340		2	9606
DIFLFITR	0	1	Unmodified	1023.5753	0.57531699	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10	0										2							22.447	22.447	2	0.054007	20019	DP690-10	111.82	62.457			NaN	NaN	NaN	0	0	Median	0	0	0	2105	1377	1978	4198;4199	10342;10343	10343		2	9606
DIGEGNLSTAAAAALAAAAVK	1	0	Unmodified	1883.9953	0.99525556	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	10	0										1							22.412	22.412	2	4.1374E-23	19958	DP690-10	203.2	203.2			0.80961	0.98065	NaN	1	0	Median	193530000	103730000	89806000	2106	1710	1979	4200	10344;10345;10346;10347;10348	10345		5	9606
DIGFIKLD	1	0	Unmodified	919.50148	0.50148335	974	P62273	RPS29	40S ribosomal protein S29	yes	yes	0	0	1	16	0																1	20.718	20.718	1	0.021786	15763	DP690-16	80.165	52.911			0.95638	1.1201	NaN	1	0	Median	12572000	6359300	6212600	2107	974	1980	4201	10349	10349		0	9606
DIHTLAQLISAYSLVDPEK	1	0	Unmodified	2112.1103	0.11028532	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11.2	1.17									1		1	3					24.258	24.258	2;3	6.035E-05	20726	DP690-12	112.56	85.064			0.69557	0.83385	13.48	2	0	Median	11357000	5055100	6301700	2108	288	1981	4202;4203;4204;4205;4206	10350;10351;10352;10353;10354;10355;10356;10357;10358;10359;10360;10361;10362;10363;10364;10365	10355		16	9606
DIHTLAQLISAYSLVDPEKAK	2	0	Unmodified	2311.2424	0.24236212	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	1	11	0											2						22.513	22.513	3;4	1.3021E-20	19971	DP690-11	195.55	184.92			0.91453	1.087	20.038	2	0	Median	69156000	32607000	36550000	2109	288	1982	4207;4208	10366;10367;10368;10369;10370	10367		5	9606
DIICQIAYAR	0	1	Unmodified	1221.6176	0.61759251	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	12	3.46						1								3			18.189	18.189	2	0.002707	11999	DP690-6	105.14	71.047			0.73164	0.83749	NaN	1	0	Median	5850200	3627300	2222800	2110	757	1983	4209;4210;4211;4212	10371;10372;10373;10374;10375	10374		5	9606
DIIGLAETGSGK	1	0	Unmodified	1159.6085	0.60846762	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	13	0													1				17.384	17.384	2	0.0010009	11924	DP690-13	105.4	55.974			0.83499	0.91278	NaN	1	0	Median	327470000	175750000	151720000	2111	2090	1984	4213	10376;10377;10378;10379;10380	10377		5	9606
DIILGMEISAPSQQR	0	1	Oxidation (M)	1672.8454	0.8454202	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	1	0	10	0										1							17.848	17.848	2	0.025265	13619	DP690-10	96.64	53.556			NaN	NaN	NaN	0	0	Median	0	0	0	2112	1492	1985	4214	10381	10381	2181	1	9606
DIILPFR	0	1	Unmodified	872.51199	0.51198846	1836	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	13	0													1				19.983	19.983	2	0.04493	15367	DP690-13	109.7	9.4311			NaN	NaN	NaN	0	0	Median	22290000	22290000	0	2113	1836	1986	4215	10382	10382		1	9606
DIISDTSGDFR	0	1	Unmodified	1224.5622	0.5622457	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	10	4						1								1			17.676	17.676	2	2.4602E-06	12497	DP690-14	233.46	180.74			0.83096	0.90106	0.034904	2	0	Median	691730000	378350000	313380000	2114	404	1987	4216;4217	10383;10384;10385;10386;10387;10388;10389;10390	10386		8	9606
DIISDTSGDFRK	1	1	Unmodified	1352.6572	0.65720872	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	10.7	3.82						2			1					2	1		15.421	15.421	2;3	0.00011293	9415	DP690-14	141.89	126.35			0.85894	0.93291	7.4838	6	0	Median	2538300000	1373200000	1165100000	2115	404	1988	4218;4219;4220;4221;4222;4223	10391;10392;10393;10394;10395;10396;10397;10398;10399;10400;10401;10402;10403;10404;10405;10406;10407;10408;10409;10410;10411;10412;10413	10398		23	9606
DIISELLTSDDMK	1	0	Oxidation (M)	1494.7123	0.71234034	2268	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	1	0	12	0												1					23.191	23.191	2	0.00026346	19653	DP690-12	146.71	115.22			0.84984	1.0215	NaN	1	0	Median	22650000	12470000	10180000	2116	2268	1989	4224	10414;10415;10416;10417	10416	2722	4	9606
DIISIAEDEDLR	0	1	Unmodified	1387.6831	0.68308912	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	4	0				1													20.094	20.094	2	0.0077505	14806	DP690-4	110.39	60.574			NaN	NaN	NaN	0	0	Median	0	0	0	2117	479	1990	4225	10418	10418		1	9606
DIIVIGNDITYR	0	1	Unmodified	1390.7456	0.7456298	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															19.641	19.641	2	0.0076839	13182	DP690-2	78.653	48.089			1.0821	1.1279	NaN	1	0	Median	5032300	2267200	2765200	2118	1179	1991	4226	10419	10419		1	9606
DIKPENLLLGSAGELK	2	0	Unmodified	1695.9407	0.94070079	124	O14965	AURKA	Aurora kinase A	yes	yes	0	0	1	13	0													2				19.161	19.161	2;3	2.556E-06	14430	DP690-13	159	135.86			0.80769	0.90349	12.037	2	0	Median	158010000	81184000	76830000	2119	124	1992	4227;4228	10420;10421;10422;10423;10424;10425;10426;10427	10427		8	9606
DIKPQNLLLDPDTAVLK	2	0	Unmodified	1892.0619	0.06187856	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	1	10.3	3.77					1								2				19.77	19.77	2;3	1.8746E-08	15143	DP690-13	179.55	140.59			0.66876	0.74624	9.2902	2	0	Median	218930000	132740000	86188000	2120	811	1993	4229;4230;4231	10428;10429;10430;10431;10432;10433;10434;10435;10436;10437;10438	10434		11	9606
DILAVLTMK	1	0	Unmodified	1002.5784	0.57835346	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	12	0												1					22.089	22.089	2	0.014771	18452	DP690-12	84.743	68.599			1.0162	1.2336	NaN	1	0	Median	8431600	3640700	4790900	2121	1147	1994	4232	10439;10440	10439		2	9606
DILCGAADEVLAVLK	1	0	Unmodified	1585.8385	0.83854391	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	9.67	0.745									3	2	1						25.393	25.393	2	1.9248E-05	23429	DP690-10	152.85	129.62			0.83435	1.0174	22.451	3	0	Median	30333000	16819000	13513000	2122	269	1995	4233;4234;4235;4236;4237;4238	10441;10442;10443;10444;10445;10446;10447;10448;10449;10450;10451	10441		11	9606
DILETHLR	0	1	Unmodified	995.53999	0.53999412	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								14.221	14.221	2	0.03973	7390	DP690-9	127.12	75.33			0.80808	0.89182	NaN	1	0	Median	154240000	81743000	72501000	2123	1046	1996	4239	10452	10452		0	9606
DILLLPLQLPR	0	1	Unmodified	1289.8071	0.80710784	1233	Q13671	RIN1	Ras and Rab interactor 1	yes	yes	0	0	0	3	0			1														23.577	23.577	2	0.00050851	19241	DP690-3	113.26	113.26			0.8777	0.95282	NaN	1	0	Median	2271100	1274100	997040	2124	1233	1997	4240	10453;10454;10455;10456	10454		4	9606
DILPCLDGYLK	1	0	Unmodified	1305.6639	0.663874	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7.5	3.2		1							2	1							21.498	21.498	2	0.00015354	19111	DP690-10	139.98	111.06			0.76512	0.90371	11.547	4	0	Median	293760000	169660000	124090000	2125	1046	1998	4241;4242;4243;4244	10457;10458;10459;10460;10461;10462;10463;10464;10465;10466;10467	10459		11	9606
DILQNVFK	1	0	Unmodified	975.53893	0.53893149	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	10	3.46				1								3					19.815	19.815	2	0.052721	14474	DP690-4	114.72	34.166			0.69924	0.75095	NaN	1	0	Median	5030000	2917900	2112100	2126	751	1999	4245;4246;4247;4248	10468;10469;10470;10471	10471		3	9606
DILQQVVDHLSPVSTMNK	1	0	Oxidation (M)	2039.0357	0.035740164	1532	Q7L7V1	DHX32	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32	yes	yes	0	1	0	3	0			1														21.843	21.843	3	0.041685	17337	DP690-3	47.223	47.223			1.6427	1.7151	NaN	1	0	Median	2820700	1138000	1682600	2127	1532	2000	4249	10472	10472	2214	1	9606
DILYVFQGIDGK	1	0	Unmodified	1366.7133	0.71326704	1837	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	11	0											1						22.009	22.009	2	0.00040182	19387	DP690-11	115.18	76.899			0.85279	1.0457	NaN	1	0	Median	21444000	12032000	9411900	2128	1837	2001	4250	10473;10474	10474		2	9606
DIMEIEGEPAPDHR	0	1	Oxidation (M)	1623.7199	0.71988533	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	1	0	9	0									1								13.46	13.46	2	0.034098	6464	DP690-9	91.961	43.957			NaN	NaN	NaN	0	0	Median	0	0	0	2129	2411	2002	4251	10475	10475	2833	1	9606
DINAVLIDMER	0	1	Unmodified	1287.6493	0.64928657	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11.2	1.34									1	1	1	2	1				21.24	21.24	2	7.5396E-05	16246	DP690-9	128.03	67.206			0.95493	1.1675	27.997	5	0	Median	475580000	262690000	212890000	2130	897	2003	4252;4253;4254;4255;4256;4257	10476;10477;10478;10479;10480;10481;10482;10483;10484;10485;10486;10487;10488;10489	10489		14	9606
DINAVLIDMER	0	1	Oxidation (M)	1303.6442	0.6442012	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	12.3	1.89											2				1		17.809	17.809	2	0.0017598	13416	DP690-11	106.16	55.684			0.79479	0.89249	NaN	1	0	Median	261770000	141810000	119960000	2131	897	2003	4258;4259;4260	10490;10491;10492;10493;10494;10495	10490	1388	6	9606
DINAYNCEEPTEK	1	0	Unmodified	1581.6617	0.66170175	618	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	7	0							3										13.476	13.476	2	6.9852E-05	6501	DP690-7	155.97	125.4			NaN	NaN	NaN	0	0	Median	19876000	0	19876000	2132	618	2004	4261;4262;4263	10496;10497;10498;10499	10497		4	9606
DINLQDEDWNEFNDINK	1	0	Unmodified	2120.9287	0.92869214	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										3							20.666	20.666	2	8.8561E-13	17691	DP690-10	206.45	194.14			0.98801	1.2058	NaN	1	0	Median	24551000	13225000	11326000	2133	1492	2005	4264;4265;4266	10500;10501;10502;10503;10504;10505	10502		6	9606
DINTDFLLVVLR	0	1	Unmodified	1416.7977	0.79766537	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	9.8	0.748									2	2	1						25.462	25.462	2	6.0638E-05	21070	DP690-9	129.38	61.159			0.7581	0.93524	14.276	3	0	Median	19524000	9157800	10366000	2134	1137	2006	4267;4268;4269;4270;4271	10506;10507;10508;10509;10510;10511;10512;10513;10514;10515;10516;10517	10515		12	9606
DIPFSAIYFPCYAHVK	1	0	Unmodified	1926.9338	0.93384128	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	12	0												2					20.738	20.738	2;3	0.00079387	16845	DP690-12	121.68	40.155			0.6982	0.83696	5.1569	2	0	Median	53979000	32896000	21083000	2135	2359	2007	4272;4273	10518;10519;10520;10521;10522;10523	10521		6	9606
DIPFSAIYFPVYAHCK	1	0	Unmodified	1926.9338	0.93384128	274	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	12	0												2					20.738	20.738	2;3	0.00084737	16839	DP690-12	99.215	0			0.6982	0.83696	5.1569	2	0	Median	53979000	32896000	21083000	2136	274	2008	4274;4275	10524;10525;10526	10524		3	9606
DIPGLTDTTVPR	0	1	Unmodified	1283.6721	0.67213051	989	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	10.8	3.77							2							1	1		17.586	17.586	2	8.3067E-05	12445	DP690-14	125.68	95.07			0.82158	0.94237	8.4057	2	0	Median	205040000	114550000	90484000	2137	989	2009	4276;4277;4278;4279	10527;10528;10529;10530;10531;10532	10528		6	9606
DIPNENEAQFQIR	0	1	Unmodified	1572.7532	0.75323437	1152	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	11	0											1						16.854	16.854	2	0.023496	11916	DP690-11	94.616	56.621			NaN	NaN	NaN	0	0	Median	18119000	0	18119000	2138	1152	2010	4280	10533;10534	10534		2	9606
DIPNENELQFQIK	1	0	Unmodified	1586.794	0.79403655	1013	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	11	0											1						18.776	18.776	2	0.023393	14969	DP690-11	94.692	39.908			NaN	NaN	NaN	0	0	Median	35242000	35242000	0	2139	1013	2011	4281	10535	10535		1	9606
DIPSLPPLPPLPPLPPLDR	0	1	Unmodified	2043.1768	0.17684874	801	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	10	0										3							24.848	24.848	2	8.4648E-06	22857	DP690-10	153.32	125.46			0.29064	0.36458	22.442	2	0	Median	27959000	20945000	7014900	2140	801	2012	4282;4283;4284	10536;10537;10538;10539;10540;10541	10540		6	9606
DIPVTIHNLEEYLR	0	1	Unmodified	1710.8941	0.89408495	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	10	0										2							21.582	21.582	2;3	0.00013453	18948	DP690-10	112.94	108.85			0.68089	0.84933	9.0553	2	0	Median	51797000	29667000	22130000	2141	1282	2013	4285;4286	10542;10543;10544;10545	10544		4	9606
DIQDSLTVSNEVQTAK	1	0	Unmodified	1746.8636	0.86357268	768	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	0	10	4						1								1			16.697	16.697	2	7.0651E-24	11235	DP690-14	269.81	219.02			0.85438	0.99456	31.039	2	0	Median	109940000	54746000	55190000	2142	768	2014	4287;4288	10546;10547;10548;10549;10550;10551	10548		6	9606
DIQQTLTQNMER	0	1	Oxidation (M)	1491.6988	0.69875596	2158	Q9HAV4	XPO5	Exportin-5	yes	yes	0	1	0	3	0			2														14.768	14.768	2	0.019001	8358	DP690-3	95.483	43.534			NaN	NaN	NaN	0	0	Median	4817800	0	4817800	2143	2158	2015	4289;4290	10552;10553	10552	2644	2	9606
DIRPGAAFEPTYIYR	0	2	Unmodified	1767.8944	0.8944193	1287	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	1	11	0											1						17.634	17.634	3	0.0015386	13223	DP690-11	81.992	81.992			1.2293	1.5154	NaN	1	0	Median	83834000	39320000	44514000	2144	1287	2016	4291	10554	10554		1	9606
DISCLNRDPAR	0	2	Unmodified	1315.6303	0.63028247	1390	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	1	14	0														1			12.049	12.049	2	0.0052537	4785	DP690-14	103.55	58.683			1.1675	1.372	NaN	1	0	Median	24477000	10494000	13983000	2145	1390	2017	4292	10555;10556	10556		2	9606
DISEASVFDAYVLPK	1	0	Unmodified	1652.8298	0.82975336	996	P62854	RPS26	40S ribosomal protein S26	yes	yes	0	0	0	16	0																1	22.059	22.059	2	0.0062134	16982	DP690-16	109.24	72.124			NaN	NaN	NaN	0	0	Median	1941100	1941100	0	2146	996	2018	4293	10557;10558	10558		2	9606
DISEVIALGVPNPR	0	1	Unmodified	1478.8093	0.80929269	1226	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	8	4				1								1					21.087	21.087	2	2.9425E-05	15832	DP690-4	126.31	99.424			1.2576	1.4793	23.931	2	0	Median	13481000	6731000	6750500	2147	1226	2019	4294;4295	10559;10560;10561;10562;10563;10564	10562		6	9606
DISLSDYK	1	0	Unmodified	939.45493	0.45492709	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	15	0															1		15.755	15.755	2	0.046236	9658	DP690-15	120.49	44.454			0.91377	0.87448	NaN	1	0	Median	5044600000	2653400000	2391200000	2148	1128	2020	4296	10565	10565		0	9606
DISLSDYKGK	2	0	Unmodified	1124.5714	0.57135383	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	15	0															1		13.467	13.467	2	0.0066435	6637	DP690-15	104.01	80.058			1.0381	1.1902	NaN	1	0	Median	526410000	226710000	299700000	2149	1128	2021	4297	10566;10567;10568	10567		3	9606
DISMEIDSPENMMR	0	1	3 Oxidation (M)	1714.6848	0.68482174	1353	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	3	0	4	0				1													15.001	15.001	2	0.00095276	8576	DP690-4	120.77	104.39			NaN	NaN	NaN	0	0	Median	1911300	0	1911300	2150	1353	2022	4298	10569;10570	10570	2097;2098;2099	2	9606
DISTNYYASQK	1	0	Unmodified	1288.5935	0.59354583	490	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	3	0			1														13.866	13.866	2	0.0001201	7128	DP690-3	125.71	91.326			1.3471	1.4398	NaN	1	0	Median	24054000	10365000	13689000	2151	490	2023	4299	10571;10572;10573;10574;10575	10575		5	9606
DISTTLNADEAVAR	0	1	Unmodified	1474.7264	0.72635092	1778	Q92598;O95757	HSPH1;HSPA4L	Heat shock protein 105 kDa;Heat shock 70 kDa protein 4L	yes	no	0	0	0	3	0			1														16.89	16.89	2	3.6616E-05	11162	DP690-3	172.13	113.76			1.0564	1.1457	NaN	1	0	Median	64999000	30294000	34706000	2152	1778	2024	4300	10576;10577;10578;10579	10579		4	9606
DITLFHAMDTLYR	0	1	Unmodified	1594.7814	0.78136338	1998	Q9BTC8	MTA3	Metastasis-associated protein MTA3	yes	yes	0	0	0	12	0												1					20.919	20.919	3	0.066024	17140	DP690-12	42.797	15.468			0.59667	0.72879	NaN	1	0	Median	6181300	4076900	2104500	2153	1998	2025	4301	10580	10580		1	9606
DITPLQVVLPNTALHLK	1	0	Unmodified	1871.088	0.088033731	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														20.719	20.719	3	7.5675E-05	16019	DP690-3	114.27	114.27			0.62615	0.66356	NaN	1	0	Median	10386000	6562600	3823400	2154	1293	2026	4302	10581;10582;10583	10581		3	9606
DITSDSENSNFR	0	1	Unmodified	1383.5903	0.59025137	583	P25445	FAS	Tumor necrosis factor receptor superfamily member 6	yes	yes	0	0	0	13.5	0.5													1	1			13.842	13.842	2	6.1455E-11	7291	DP690-14	176.33	129.43			0.76015	0.92584	NaN	1	0	Median	63505000	26640000	36865000	2155	583	2027	4303;4304	10584;10585;10586;10587;10588;10589;10590	10587		7	9606
DITSDTSGDFR	0	1	Unmodified	1212.5259	0.5258602	365	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	6	0						1											14.922	14.922	2	3.0013E-05	8020	DP690-6	186.16	149.76			0.8427	0.90399	NaN	1	0	Median	94343000	51068000	43275000	2156	365	2028	4305	10591;10592;10593;10594	10593		4	9606
DITSSIHFEAYR	0	1	Unmodified	1437.6888	0.6888432	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	12	0												1					17.187	17.187	3	0.015515	12069	DP690-12	96.64	58.006			NaN	NaN	NaN	0	0	Median	0	0	0	2157	2344	2029	4306	10595	10595		1	9606
DITVFVPQWR	0	1	Unmodified	1259.6663	0.66625727	132	O15037	KHNYN	Protein KHNYN	yes	yes	0	0	0	11	0											1						21.213	21.213	2	0.025561	18547	DP690-11	96.492	51.469			NaN	NaN	NaN	0	0	Median	15355000	0	15355000	2158	132	2030	4307	10596	10596		1	9606
DITVLDLGCGK	1	0	Unmodified	1189.6013	0.60127375	162	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	8	4				1								1					19.114	19.114	2	0.00043185	13716	DP690-4	115.71	66.178			0.92581	1.0508	2.2276	2	0	Median	96544000	46968000	49576000	2159	162	2031	4308;4309	10597;10598;10599;10600	10600		4	9606
DITYFIQQLLR	0	1	Unmodified	1408.7715	0.77145062	940	P61158;Q9C0K3;Q9P1U1	ACTR3;ACTR3C;ACTR3B	Actin-related protein 3;Actin-related protein 3C;Actin-related protein 3B	yes	no	0	0	0	10.6	3.2					1				1				3				27.08	27.08	2	0.00011352	22620	DP690-5	133.86	112.41			0.98328	1.106	8.1167	3	0	Plateau	11362000	5033900	6328500	2160	940	2032	4310;4311;4312;4313;4314	10601;10602;10603;10604;10605;10606;10607;10608;10609;10610	10606		10	9606
DIVEYAELK	1	0	Unmodified	1078.5546	0.55464113	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	3	0			1														17.541	17.541	2	0.071036	12237	DP690-3	60.91	29.15			1.0265	1.1038	NaN	1	0	Median	19008000	8796400	10212000	2161	1531	2033	4315	10611	10611		1	9606
DIVINANPASPPLSLLVLHR	0	1	Unmodified	2138.2212	0.22117317	1187	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	10	4						1								1			21.516	21.516	3	2.1063E-05	17537	DP690-14	121.01	121.01			0.94097	1.167	NaN	1	0	Median	9604400	4640300	4964000	2162	1187	2034	4316;4317	10612;10613;10614	10612		3	9606
DIVPFSELGTTPSGGGFFQGISFPEISTRPPLGSTELQAAK	1	1	Unmodified	4235.1427	0.14265466	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	1	11	0											1						24.051	24.051	3	2.1744E-11	21767	DP690-11	84.183	76.141			NaN	NaN	NaN	0	0	Median	8536700	6047700	2488900	2163	723	2035	4318	10615	10615		1	9606
DIVPGDIVEIAVGDKVPADIR	1	1	Unmodified	2190.1896	0.18959827	506	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	1	11	0											1						21.922	21.922	3	2.6977E-05	19142	DP690-11	121.82	107.56			0.49497	0.62362	NaN	1	0	Median	34327000	21887000	12440000	2164	506	2036	4319	10616;10617;10618	10616		3	9606
DIVQFVPFR	0	1	Unmodified	1119.6077	0.60767976	1813	Q96A23	CPNE4	Copine-4	no	no	0	0	0	6.67	3.77				2								1					20.848	20.848	2	0.00067876	16879	DP690-12	141.52	86.969			0.64563	0.76973	NaN	1	0	Median	36363000	19048000	17315000	2165	1813	2037	4320;4321;4322	10619;10620;10621;10622;10623;10624;10625;10626;10627;10628	10619		10	9606
DIYQDLNR	0	1	Unmodified	1035.4985	0.49852324	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	11	0											1						15.939	15.939	2	0.0083681	10838	DP690-11	121.29	60.532			NaN	NaN	NaN	0	0	Median	97611000	97611000	0	2166	736	2038	4323	10629;10630	10630		2	9606
DKAPVQPQQSPAAAPGGTDEKPSGK	3	0	Unmodified	2460.2245	0.22448023	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	2	3	0			2														10.459	10.459	3	1.5885E-15	2736	DP690-3	164.27	150.91			0.78561	0.815	NaN	1	0	Median	15947000	8219700	7727400	2167	1190	2039	4324;4325	10631;10632	10631		2	9606
DKDAYSSFGSR	1	1	Unmodified	1231.5469	0.54692999	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	1	10.2	3.12				1							1	3					12.026	12.026	2	0.00035216	4560	DP690-4	176.33	146.25			0.83997	0.941	8.0339	3	0	Median	608370000	357830000	250530000	2168	96	2040	4326;4327;4328;4329;4330	10633;10634;10635;10636;10637;10638;10639;10640;10641;10642;10643;10644;10645	10645		13	9606
DKDDDGGEDDDANCNLICGDEYGPETR	1	1	Unmodified	3044.152	0.15198108	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	1	10	0										1							16.259	16.259	3	8.5713E-10	11379	DP690-10	129.37	127.57			NaN	NaN	NaN	0	0	Median	21598000	21598000	0	2169	1137	2041	4331	10646	10646		1	9606
DKDFAIDIIK	2	0	Unmodified	1176.639	0.63903946	1320	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	1	6	0						1											17.388	17.388	2	0.00073619	11057	DP690-6	128.81	93.515			0.74377	0.76888	NaN	1	0	Median	11925000	7510500	4414200	2170	1320	2042	4332	10647;10648	10647		2	9606
DKEAEALETETK	2	0	Unmodified	1362.6515	0.65145464	1571	Q86UU1	PHLDB1	Pleckstrin homology-like domain family B member 1	yes	yes	0	0	1	3	0			1														11.586	11.586	2	0.032639	4174	DP690-3	106.62	62.849			NaN	NaN	NaN	0	0	Median	1498800	1498800	0	2171	1571	2043	4333	10649	10649		1	9606
DKEIIAEYDTQVK	2	0	Unmodified	1550.7828	0.78280317	234	O75044;P0DMP2;P0DJJ0	SRGAP2;SRGAP2B;SRGAP2C	SLIT-ROBO Rho GTPase-activating protein 2;SLIT-ROBO Rho GTPase-activating protein 2B;SLIT-ROBO Rho GTPase-activating protein 2C	yes	no	0	0	1	11	0											1						14.64	14.64	2	0.00047747	8943	DP690-11	160.67	24.175			0.75182	0.88442	NaN	1	0	Median	50330000	30530000	19800000	2172	234	2044	4334	10650;10651;10652	10652		3	9606
DKELEGLQVK	2	0	Unmodified	1157.6292	0.62920306	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	1	9	3.56				1							1	1					13.276	13.276	2	9.2515E-05	6860	DP690-11	177.3	58.562			0.8796	0.98283	NaN	1	0	Median	252300000	141980000	110320000	2173	701	2045	4335;4336;4337	10653;10654;10655;10656;10657;10658;10659	10653		7	9606
DKELTGALIASLINCYIR	1	1	Unmodified	2049.0929	0.092861113	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	1	10	0.707									1	2	1						24.585	24.585	2;3	5.1948E-14	22369	DP690-11	193.41	170.43			0.80746	1.0139	7.9348	3	0	Median	69998000	32968000	37030000	2174	272	2046	4338;4339;4340;4341	10660;10661;10662;10663;10664;10665;10666;10667;10668;10669	10667		10	9606
DKELVASAGLDR	1	1	Unmodified	1272.6674	0.66737948	1708	Q8TAF3	WDR48	WD repeat-containing protein 48	yes	yes	0	0	1	11	0											1						13.235	13.235	2	0.02739	6867	DP690-11	80.245	49.99			0.80567	1.0172	NaN	1	0	Median	33273000	15066000	18207000	2175	1708	2047	4342	10670	10670		1	9606
DKEVQQLQENLDSTVTQLAAFTK	2	0	Unmodified	2605.3235	0.32352557	1294	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	1	9	0									1								23.408	23.408	3	0.00038617	18834	DP690-9	95.742	85.121			1.4268	1.7425	NaN	1	0	Median	2817800	1370000	1447900	2176	1294	2048	4343	10671;10672	10671		2	9606
DKFESSFSHKPSLFNK	3	0	Unmodified	1896.937	0.9370124	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	2	3	0			1														13.953	13.953	4	0.0070643	7309	DP690-3	77.324	51.346			0.76558	0.79422	NaN	1	0	Median	91017000	51640000	39377000	2177	5	2049	4344	10673;10674	10674		2	9606
DKFNECGHVLYADIK	2	0	Unmodified	1807.8563	0.85631924	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	11	0											1						14.738	14.738	3	8.8421E-06	9017	DP690-11	142.91	103.48			0.81523	0.89518	NaN	1	0	Median	379070000	200920000	178150000	2178	849	2050	4345	10675;10676;10677	10677		3	9606
DKFPEVIINFPDPAQK	2	0	Unmodified	1856.9672	0.96724989	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	1	10	0										2							19.836	19.836	2;3	2.8955E-06	16520	DP690-10	128.82	97.778			0.56701	0.70429	3.2921	2	0	Median	108880000	65284000	43600000	2179	1071	2051	4346;4347	10678;10679;10680;10681;10682	10679		5	9606
DKFQETSDEFEAAR	1	1	Unmodified	1671.7376	0.73764389	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	1	10	0										2							14.533	14.533	2;3	1.0451E-08	8866	DP690-10	205.12	118.22			0.78862	0.96005	11.494	2	0	Median	273630000	145610000	128020000	2180	1285	2052	4348;4349	10683;10684;10685;10686;10687;10688	10688		6	9606
DKFTDSAIAMNSK	2	0	Unmodified	1426.6762	0.67622961	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	1	11	0											1						14.071	14.071	2	0.00034081	8058	DP690-11	136.01	136.01			0.66434	0.78341	NaN	1	0	Median	46868000	28872000	17996000	2181	1755	2053	4350	10689;10690;10691	10690		3	9606
DKFTDSAIAMNSK	2	0	Oxidation (M)	1442.6711	0.67114423	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	1	1	13	0													1				12.332	12.332	2	0.01821	5115	DP690-13	113.61	73.761			NaN	NaN	NaN	0	0	Median	4038300	0	4038300	2182	1755	2053	4351	10692;10693	10692	2325	2	9606
DKGEYTLVVK	2	0	Unmodified	1150.6234	0.6233894	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10.8	4.18		1							2	1	1			1	1	1	13.502	13.502	2	0.00025614	7264	DP690-11	166.66	120.53			0.79107	0.86483	10.587	7	0	Median	3406599999.9999995	1850599999.9999998	1555999999.9999998	2183	549	2054	4352;4353;4354;4355;4356;4357;4358;4359	10694;10695;10696;10697;10698;10699;10700;10701;10702;10703;10704;10705;10706;10707;10708;10709;10710;10711;10712;10713	10699		20	9606
DKKDEEEDMSLD	2	0	Unmodified	1452.5926	0.59261913	1352	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	2	13	0													1				13.001	13.001	2	0.0074953	5966	DP690-13	125.68	106.94			NaN	NaN	NaN	0	0	Median	0	0	0	2184	1352	2055	4360	10714	10714		1	9606
DKLESEMEDAYHEHQANLLR	1	1	Oxidation (M)	2443.1074	0.10740156	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	1	11	0											1						13.64	13.64	4	5.4748E-05	7400	DP690-11	111.63	93.907			0.88506	0.99743	NaN	1	0	Median	169160000	101290000	67871000	2185	566	2056	4361	10715;10716	10716	745	2	9606
DKLESEMEDAYHEHQANLLR	1	1	Unmodified	2427.1125	0.11248694	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	11	0											1						16.984	16.984	4	1.0868E-06	12201	DP690-11	128.1	103.55			0.75794	0.87114	NaN	1	0	Median	127670000	70362000	57304000	2186	566	2056	4362	10717;10718;10719	10717		3	9606
DKLNNLVLFDK	2	0	Unmodified	1317.7293	0.72925145	995	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	1	12	4								1								1	17.378	17.378	2	2.9023E-05	11520	DP690-16	249.83	188.92			0.96384	1.0841	5.8411	2	0	Median	378380000	190070000	188310000	2187	995	2057	4363;4364	10720;10721;10722;10723;10724;10725;10726;10727	10722		8	9606
DKLPQPVQPDPVSHCK	2	0	Unmodified	1843.9251	0.9250675	387	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	1	3	0			1														12.11	12.11	3	0.0034909	4731	DP690-3	72.583	58.718			0.73886	0.80039	NaN	1	0	Median	17081000	9322600	7758300	2188	387	2058	4365	10728	10728		1	9606
DKLVGAIVYYDGQHNDAR	1	1	Unmodified	2032.9967	0.99665254	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	1	11	0											1						15.502	15.502	3	1.6709E-06	10130	DP690-11	129.88	102.84			0.86589	1.0092	NaN	1	0	Median	104500000	57377000	47124000	2189	737	2059	4366	10729;10730	10729		2	9606
DKLYHPECFMCSDCGLNLK	2	0	Unmodified	2386.0214	0.021428783	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	1	14	0														1			17.023	17.023	3	4.4402E-05	11751	DP690-14	118.23	104.21			0.76833	0.85971	NaN	1	0	Median	83737000	48768000	34969000	2190	820	2060	4367	10731;10732	10731		2	9606
DKMMNGGHYTYSENRVEK	2	1	Oxidation (M)	2173.9521	0.95208689	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	1	2	7	0							1										10.347	10.347	4	0.0019358	2765	DP690-7	73.252	51.551			0.8302	0.88085	NaN	1	0	Median	27731000	13448000	14283000	2191	1939	2061	4368	10733;10734	10734	2472;2473	2	9606
DKMYITCAEYTHFYGGK	2	0	Oxidation (M)	2098.9128	0.91284784	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	1	1	12	0												1					15.198	15.198	3	0.00038681	9281	DP690-12	91.932	74.957			0.66306	0.77369	NaN	1	0	Median	28088000	14592000	13496000	2192	1200	2062	4369	10735;10736	10735	1852	2	9606
DKNFNAVGSVLSK	2	0	Unmodified	1377.7252	0.72522871	1820	Q96AX1	VPS33A	Vacuolar protein sorting-associated protein 33A	yes	yes	0	0	1	12	0												1					15.068	15.068	2	0.015922	9167	DP690-12	126.71	77.649			NaN	NaN	NaN	0	0	Median	11153000	11153000	0	2193	1820	2063	4370	10737	10737		1	9606
DKNTNQIVAIK	2	0	Unmodified	1242.6932	0.6932003	822	P50613	CDK7	Cyclin-dependent kinase 7	yes	yes	0	0	1	14	0														1			12.012	12.012	2	0.0093697	4820	DP690-14	94.309	32.53			0.73297	0.82359	NaN	1	0	Median	22396000	11569000	10827000	2194	822	2064	4371	10738	10738		1	9606
DKPHVNVGTIGHVDHGK	2	0	Unmodified	1808.9282	0.92817905	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	11	2									1				1				10.39	10.39	4	4.9309E-07	2631	DP690-13	140.68	122.21			0.66447	0.76589	10.203	2	0	Median	393310000	223050000	170260000	2195	793	2065	4372;4373	10739;10740;10741;10742	10740		4	9606
DKPLKDVIIADCGK	3	0	Unmodified	1570.8389	0.83887826	568	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	2	15	0															1		13.52	13.52	3	0.020605	6840	DP690-15	55.885	40.889			0.60527	0.65934	NaN	1	0	Median	16412000	8944800	7467500	2196	568	2066	4374	10743	10743		1	9606
DKPSGDTAAVFEEGGDVDDLLDMI	1	0	Oxidation (M)	2524.1163	0.11629449	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	1	1	11	0											1						24.401	24.401	2	0.014583	22168	DP690-11	100.23	75.263			NaN	NaN	NaN	0	0	Median	0	0	0	2197	480	2067	4375	10744	10744	593	1	9606
DKQNKPTGFALGSIEGR	2	1	Unmodified	1816.9432	0.94316041	1045	P78406	RAE1	mRNA export factor	yes	yes	0	0	2	14	0														2			14.333	14.333	3;4	1.2774E-07	7946	DP690-14	152.68	129.83			0.65031	0.78272	14.55	2	0	Median	227420000	124290000	103130000	2198	1045	2068	4376;4377	10745;10746;10747	10745		3	9606
DKQPNAQPQYLHGSK	2	0	Unmodified	1709.8485	0.84853174	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	1	3	0			2														10.334	10.334	3	0.0027926	2583	DP690-3	112.24	73.258			NaN	NaN	NaN	0	0	Median	49186000	49186000	0	2199	1531	2069	4378;4379	10748;10749	10748		2	9606
DKQQAEENEKNLEDQSSK	3	0	Unmodified	2118.9665	0.9665342	1289	Q14699	RFTN1	Raftlin	yes	yes	0	0	2	11	0											1						10.481	10.481	3	9.0824E-31	2794	DP690-11	247.02	247.02			1.2038	1.304	NaN	1	0	Median	116420000	54619000	61805000	2200	1289	2070	4380	10750;10751;10752	10750		3	9606
DKRPLSGPDVGTPQPAGLASGAK	2	1	Unmodified	2218.1706	0.17059416	350	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	0	2	12	0												1					13.523	13.523	3	0.00012619	6861	DP690-12	116.94	104.4			0.5276	0.58227	NaN	1	0	Median	60507000	41234000	19273000	2201	350	2071	4381	10753;10754	10753		2	9606
DKSTTPGGTGIKPFLER	2	1	Unmodified	1802.9527	0.95266246	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	2	10.2	0.829									1	1	2						14.157	14.157	3	5.2737E-05	8227	DP690-10	131.45	104.72			0.69717	0.79555	NaN	1	0	Median	425490000	246080000	179410000	2202	2190	2072	4382;4383;4384;4385	10755;10756;10757;10758	10755		4	9606
DKTGTDSNSTESSETSTGSLCK	2	0	Unmodified	2290.9707	0.97069288	1654	Q8N3X1	FNBP4	Formin-binding protein 4	yes	yes	0	0	1	10	0										2							10.772	10.772	3	0.00019374	3306	DP690-10	133.65	112.71			NaN	NaN	NaN	0	0	Median	0	0	0	2203	1654	2073	4386;4387	10759;10760	10759		2	9606
DKTSDLVEEYFEAHSSSK	2	0	Unmodified	2070.9382	0.93819419	1205	Q13416	ORC2	Origin recognition complex subunit 2	yes	yes	0	0	1	12	0												1					18.404	18.404	3	0.052005	13799	DP690-12	43.115	32.316			0.94226	1.0844	NaN	1	0	Median	51142000	26742000	24401000	2204	1205	2074	4388	10761	10761		1	9606
DKVAGHSLGYGFVNYVTAK	2	0	Unmodified	2025.032	0.031975415	1346	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	1	14	0														2			16.668	16.668	3;4	0.0081992	11152	DP690-14	93.804	69.904			0.81257	0.91082	NaN	1	0	Median	125670000	27771000	97898000	2205	1346	2075	4389;4390	10762;10763;10764;10765	10764		4	9606
DKVDVASVIVTK	2	0	Unmodified	1272.7289	0.7289171	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	1	13	0													1				14.943	14.943	2	0.021222	8661	DP690-13	84.352	56.27			0.86646	0.9724	NaN	1	0	Median	61226000	32673000	28552000	2206	934	2076	4391	10766;10767	10767		2	9606
DKVQAGDVITIDK	2	0	Unmodified	1400.7511	0.75110911	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	1	13	0													1				14.055	14.055	2	1.6431E-07	7430	DP690-13	198.52	126.27			0.8408	0.93766	NaN	1	0	Median	95605000	53114000	42491000	2207	2427	2077	4392	10768;10769;10770	10769		3	9606
DKVVGKDYLLCDYNR	2	1	Unmodified	1856.9091	0.90908309	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	2	15	0															1		14.59	14.59	3	0.004921	8233	DP690-15	73.166	60.452			0.59968	0.68537	NaN	1	0	Median	22163000	12871000	9292200	2208	769	2078	4393	10771;10772	10771		2	9606
DKWLAPDGLIFPDR	1	1	Unmodified	1641.8515	0.85149185	1962	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	1	14	0														1			20.021	20.021	2	0.0019074	15673	DP690-14	107.85	86.191			0.50161	0.62862	NaN	1	0	Median	16488000	11471000	5017200	2209	1962	2079	4394	10773	10773		1	9606
DKWSNFDPTGLER	1	1	Unmodified	1563.7318	0.73177065	2235	Q9NVI7;Q5T9A4	ATAD3A;ATAD3B	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B	yes	no	0	0	1	12	0												1					17.329	17.329	3	0.034931	12379	DP690-12	52.101	31.093			0.76843	0.99253	NaN	1	0	Median	25914000	14439000	11475000	2210	2235	2080	4395	10774	10774		1	9606
DKYPLSENHNNNTFLK	2	0	Unmodified	1932.933	0.93298965	2046	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	1	10	0										1							13.445	13.445	3	0.0089838	7315	DP690-10	63.212	40.885			2.1498	2.631	NaN	1	0	Median	103800000	21192000	82607000	2211	2046	2081	4396	10775;10776	10775		2	9606
DKYPNLQVIGGNVVTAAQAK	2	0	Unmodified	2085.1219	0.12185306	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	1	4	0				3													18.002	18.002	2;3	3.1519E-09	12350	DP690-4	159.72	127.53			1.0876	1.1129	NaN	1	0	Median	39062000	19417000	19645000	2212	474	2082	4397;4398;4399	10777;10778;10779;10780	10778		4	9606
DLAALGDKVNSLGETAER	1	1	Unmodified	1857.9432	0.94321999	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							17.475	17.475	3	0.00022706	13128	DP690-10	99.813	82.532			0.77128	0.9289	NaN	1	0	Median	148140000	78777000	69365000	2213	1236	2083	4400	10781;10782	10782		2	9606
DLADELALVDVIEDK	1	0	Unmodified	1656.8458	0.84579735	352	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	6	0						1											24.558	24.558	2	0.00044147	18959	DP690-6	129.71	129.71			1.372	1.4826	NaN	1	0	Median	1320300	497450	822870	2214	352	2084	4401	10783	10783		1	9606
DLADIAAFFR	0	1	Unmodified	1137.5819	0.58185893	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	8	3.46		1								3							24.447	24.447	2	0.010722	22540	DP690-10	113.71	57.275			1.0264	1.049	NaN	1	0	Median	1109900	586580	523270	2215	283	2085	4402;4403;4404;4405	10784;10785;10786;10787;10788;10789;10790	10786		7	9606
DLADWLNIK	1	0	Unmodified	1086.571	0.5709599	1649	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	10	0										1							22.648	22.648	2	0.072556	20318	DP690-10	60.436	33.107			1.0865	1.3056	NaN	1	0	Median	4133300	2109800	2023500	2216	1649	2086	4406	10791	10791		1	9606
DLAEDAPWKK	2	0	Unmodified	1171.5873	0.58733824	549;1270;250	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	1	10	0										1							14.574	14.574	2	0.035569	8815	DP690-10	107.01	62.63			NaN	NaN	NaN	0	0	Median	266420000	266420000	0	2217	549;250;1270	2087	4407	10792;10793	10792		2	9606
DLAEITTLDR	0	1	Unmodified	1145.5928	0.59281755	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	7.75	3.11					1	1	1						1				18.141	18.141	2	3.8766E-05	11965	DP690-5	183.47	115.1			0.78745	0.86135	5.6406	4	0	Median	1094200000	589060000	505140000	2218	1989	2088	4408;4409;4410;4411	10794;10795;10796;10797;10798;10799;10800;10801;10802;10803;10804;10805;10806	10799		13	9606
DLAGEEAFR	0	1	Unmodified	1006.472	0.47197413	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	0	11	0											1						15.423	15.423	2	0.00018847	10005	DP690-11	166.68	49.28			0.81978	0.93433	NaN	1	0	Median	216040000	119110000	96930000	2219	144	2089	4412	10807;10808	10808		2	9606
DLAGSIIGK	1	0	Unmodified	872.49673	0.49673232	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	9.67	4.03				1								1	1				16.887	16.887	2	0.014945	10901	DP690-4	84.568	23.808			0.84081	0.7945	13.57	3	0	Plateau	2789900000	1523599999.9999998	1266300000	2220	959	2090	4413;4414;4415	10809;10810;10811;10812;10813	10812		5	9606
DLAILQCHGELDPMVPVR	0	1	Oxidation (M)	2078.0289	0.028880648	319	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	1	0	7	0							2										18.584	18.584	2;3	0.00015785	12928	DP690-7	105.89	82.983			0.72383	0.78055	NaN	1	0	Median	98535000	57156000	41380000	2221	319	2091	4416;4417	10814;10815;10816;10817;10818	10817	328	5	9606
DLAILQCHGELDPMVPVR	0	1	Unmodified	2062.034	0.033966025	319	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	7	0							1										19.795	19.795	3	4.4548E-05	14343	DP690-7	118.53	118.53			0.82838	0.94221	NaN	1	0	Median	23299000	13265000	10034000	2222	319	2091	4418	10819;10820	10819		2	9606
DLALVNDQLLGFVR	0	1	Unmodified	1571.8671	0.86714192	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10	0.471									1	7	1						23.239	23.239	2	1.5804E-09	21013	DP690-10	213.35	148.69			0.87699	1.0705	6.1952	2	0	Median	11816000	6439600	5376300	2223	1377	2092	4419;4420;4421;4422;4423;4424;4425;4426;4427	10821;10822;10823;10824;10825;10826;10827;10828;10829;10830;10831;10832;10833;10834;10835;10836;10837	10823		17	9606
DLAQDEAVWLER	0	1	Unmodified	1443.6994	0.69940789	614	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	14	0														1			20.675	20.675	2	0.0040309	16509	DP690-14	152.04	78.14			NaN	NaN	NaN	0	0	Median	28609000	28609000	0	2224	614	2093	4428	10838;10839	10839		2	9606
DLASGAVPTNLKPSK	2	0	Unmodified	1496.8199	0.81985737	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	1	9	0									1								14.154	14.154	2	0.0040974	7325	DP690-9	96.745	76.538			0.63964	0.75749	NaN	1	0	Median	18802000	11295000	7506800	2225	1048	2094	4429	10840;10841	10841		2	9606
DLATVAFCDAQSTQEIHEK	1	0	Unmodified	2161.995	0.99499756	908	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	13	0													2				17.976	17.976	2;3	3.8739E-34	12709	DP690-13	315.21	315.21			0.91642	1.0269	15.319	2	0	Median	445960000	236340000	209620000	2226	908	2095	4430;4431	10842;10843;10844;10845;10846;10847;10848;10849;10850;10851	10842		10	9606
DLCNTHLMR	0	1	Oxidation (M)	1174.5223	0.52231192	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.33	0.471									2	1							11.055	11.055	2;3	0.0043047	3408	DP690-9	109.48	66.232			0.8591	1.0557	1.3555	3	0	Plateau	45566000	23042000	22523000	2227	1046	2096	4432;4433;4434	10852;10853;10854;10855;10856;10857;10858;10859;10860	10857	1589	9	9606
DLCNTHLMR	0	1	Unmodified	1158.5274	0.5273973	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							12.894	12.894	3	0.016073	5713	DP690-9	68.371	48.609			0.80833	1.0127	20.471	2	0	Median	18109000	9321400	8787700	2228	1046	2096	4435;4436	10861;10862;10863;10864;10865	10864		5	9606
DLDDFQSWLSR	0	1	Unmodified	1380.631	0.63099397	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							22.413	22.413	2	2.0168E-06	19931	DP690-10	218.94	163.96			0.78002	0.97613	NaN	1	0	Median	37277000	21273000	16004000	2229	1080	2097	4437	10866;10867;10868;10869	10866		4	9606
DLDELSRYPEDK	1	1	Unmodified	1478.6889	0.68890278	735	P43243	MATR3	Matrin-3	yes	yes	0	0	1	11	0											1						15.158	15.158	2	4.2309E-07	9580	DP690-11	201.09	164.41			0.7619	0.8836	NaN	1	0	Median	112270000	66025000	46243000	2230	735	2098	4438	10870;10871;10872;10873;10874;10875	10872		6	9606
DLDFQLQDPFLLYR	0	1	Unmodified	1781.8988	0.89883598	1632	Q8IZD4	DCP1B	mRNA-decapping enzyme 1B	yes	yes	0	0	0	12	0												1					24.422	24.422	2	0.054114	21028	DP690-12	88.441	47.944			NaN	NaN	NaN	0	0	Median	0	0	0	2231	1632	2099	4439	10876	10876		1	9606
DLDIIDNYDYSHTVK	1	0	Unmodified	1809.8421	0.84210896	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	9.67	0.471									2	4							18.011	18.011	2;3	8.5728E-16	13889	DP690-10	231.67	147.16			0.81581	1.0776	8.6527	4	0	Linear	455520000	261260000	194260000	2232	250	2100	4440;4441;4442;4443;4444;4445	10877;10878;10879;10880;10881;10882;10883;10884;10885;10886;10887;10888;10889;10890	10883		14	9606
DLDKADSMIR	1	1	Unmodified	1162.5652	0.56522259	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	11	0											1						13.492	13.492	2	0.057779	7203	DP690-11	76.679	36.411			0.76266	0.89505	NaN	1	0	Median	94718000	52065000	42652000	2233	1319	2101	4446	10891	10891		1	9606
DLDLVQTWNLEK	1	0	Unmodified	1472.7511	0.75110911	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	10	0										1							21.102	21.102	2	0.057326	18222	DP690-10	85.963	37.362			NaN	NaN	NaN	0	0	Median	0	0	0	2234	2411	2102	4447	10892	10892		1	9606
DLDVITIPSK	1	0	Unmodified	1099.6125	0.61249036	62	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	11	0											1						18.188	18.188	2	0.012126	14054	DP690-11	80.688	33.086			0.67348	0.8151	NaN	1	0	Median	44346000	25743000	18604000	2235	62	2103	4448	10893;10894	10893		2	9606
DLDYYGTLLK	1	0	Unmodified	1199.6074	0.60740498	1152	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	11	0											1						19.765	19.765	2	0.015319	16272	DP690-11	76.221	56.225			0.93149	1.1343	NaN	1	0	Median	36034000	18760000	17274000	2236	1152	2104	4449	10895;10896	10895		2	9606
DLEAEHVEVEDTTLNR	0	1	Unmodified	1868.8752	0.8752	2109	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	0	0	0	8	0								2									15.547	15.547	2;3	3.7754999999999996E-22	8692	DP690-8	239.87	215.62			0.80858	0.89819	0.37967	2	0	Median	58878000	33183000	25695000	2237	2109	2105	4450;4451	10897;10898;10899;10900;10901;10902;10903;10904	10903		8	9606
DLEAHIDSANK	1	0	Unmodified	1211.5782	0.57823012	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		3															12.095	12.095	2	3.8041E-08	4223	DP690-2	199.11	128.59			1.1574	1.173	NaN	1	0	Median	32311000	14258000	18053000	2238	668	2106	4452;4453;4454	10905;10906;10907	10907		3	9606
DLEASHQHSSPNEQLK	1	0	Unmodified	1818.8497	0.84965395	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	10	1									1		1						10.408	10.408	3	1.9747E-06	2763	DP690-11	132.24	102.02			0.88933	1.0642	6.4196	2	0	Median	222380000	119590000	102790000	2239	2302	2107	4455;4456	10908;10909;10910;10911	10908		4	9606
DLEDKEGEIQAGAK	2	0	Unmodified	1501.726	0.72601657	1203	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	1	4	0				1													12.614	12.614	2	0.003696	5367	DP690-4	101.39	79.52			1.4711	1.502	NaN	1	0	Median	2534800	1225900	1309000	2240	1203	2108	4457	10912;10913;10914;10915;10916	10914		5	9606
DLEEDHACIPIK	1	0	Unmodified	1438.6762	0.67622961	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	7	4			1								1						14.773	14.773	2	0.0004081	8277	DP690-3	114.97	82.75			0.84181	0.90326	NaN	1	0	Median	39008000	10874000	28134000	2241	483	2109	4458;4459	10917;10918;10919;10920;10921	10919		5	9606
DLEEDHACIPIKK	2	0	Unmodified	1566.7712	0.77119262	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	7	4			1								1						12.836	12.836	3	0.00078835	5683	DP690-3	131.12	78.326			0.92231	0.99052	14.942	2	0	Median	657110000	348020000	309090000	2242	483	2110	4460;4461	10922;10923;10924;10925;10926;10927;10928	10927		7	9606
DLEEFFSTVGK	1	0	Unmodified	1270.6081	0.60813326	1277	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	10.5	1.5									1			1					22.035	22.035	2	0.00013122	18314	DP690-12	136.57	95.118			0.92317	1.1236	7.0658	2	0	Median	30852000	15374000	15477000	2243	1277	2111	4462;4463	10929;10930;10931;10932	10929		4	9606
DLEGLSQR	0	1	Unmodified	916.46141	0.46140945	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1															13.801	13.801	2	0.042637	6280	DP690-2	123.69	67.568			1.148	1.1922	NaN	1	0	Median	81302000	37537000	43766000	2244	668	2112	4464	10933	10933		0	9606
DLEGSDIDTR	0	1	Unmodified	1119.5044	0.50439647	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														13.504	13.504	2	0.048241	6608	DP690-3	64.841	33.767			0.68654	0.75733	NaN	1	0	Median	47077000	26146000	20932000	2245	892	2113	4465	10934;10935	10935		2	9606
DLEKEDAPQEK	2	0	Unmodified	1300.6147	0.61467521	2046	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	1	10	0										1							10.45	10.45	2	0.00060353	2881	DP690-10	155.11	107.54			NaN	NaN	NaN	0	0	Median	23195000	0	23195000	2246	2046	2114	4466	10936	10936		1	9606
DLEKPFLLPVEAVYSVPGR	1	1	Unmodified	2128.1568	0.15684158	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	13	0													2				21.674	21.674	2;3	1.0871E-05	17540	DP690-13	133.23	112.5			0.54335	0.63834	19.322	2	0	Median	52050000	30581000	21469000	2247	793	2115	4467;4468	10937;10938;10939;10940	10937		4	9606
DLENLPATNFSNLVHLVAHLLK	1	0	Unmodified	2457.338	0.33799384	1413	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	11	0											1						26.08	26.08	4	0.011699	24121	DP690-11	51.611	35.202			0.70593	0.86167	NaN	1	0	Median	25937000	15173000	10764000	2248	1413	2116	4469	10941	10941		1	9606
DLEQAISQR	0	1	Unmodified	1058.5356	0.53563702	1108	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	4	0				1													15.368	15.368	2	0.0052887	9001	DP690-4	98.629	50.714			0.98417	1.1447	NaN	1	0	Median	15493000	7829500	7663100	2249	1108	2117	4470	10942;10943;10944;10945	10944		4	9606
DLEQFER	0	1	Unmodified	935.43486	0.43486035	1511	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	7	0							1										15.254	15.254	2	0.049797	8571	DP690-7	107.55	0			NaN	NaN	NaN	0	0	Median	99095000	99095000	0	2250	1511	2118	4471	10946	10946		1	9606
DLEQKDTALEQK	2	0	Unmodified	1416.7096	0.70963822	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	1	9	0									1								11.414	11.414	2	0.061928	3805	DP690-9	72.928	47.307			0.46346	0.56679	NaN	1	0	Median	2911100	1993700	917450	2251	1048	2119	4472	10947;10948	10947		2	9606
DLEQPTYR	0	1	Unmodified	1020.4876	0.4876242	1132	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	10	0										1							13.11	13.11	2	0.054095	6796	DP690-10	113.5	56.778			0.68917	0.86184	NaN	1	0	Median	34262000	16758000	17504000	2252	1132	2120	4473	10949	10949		0	9606
DLESLREYVESQLQR	0	2	Unmodified	1863.9327	0.9326553	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	1	5	0					1												22.227	22.227	3	0.0034216	17104	DP690-5	73.802	48.867			1.481	1.4626	NaN	1	0	Median	1991100	482570	1508500	2253	1675	2121	4474	10950	10950		1	9606
DLETLPFGIALPIR	0	1	Unmodified	1553.8817	0.88172935	2096	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	10	0										2							24.501	24.501	2	0.0030823	22551	DP690-10	130.94	70.542			NaN	NaN	NaN	0	0	Median	0	0	0	2254	2096	2122	4475;4476	10951;10952	10952		2	9606
DLEVTCDPDSGGSQGLR	0	1	Unmodified	1804.7898	0.78975581	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	8	4.32		1								1		1					15.513	15.513	2	1.4025999999999999E-22	10273	DP690-10	242.97	231.44			0.68864	0.77612	19.498	2	0	Median	91384000	50157000	41227000	2255	2065	2123	4477;4478;4479	10953;10954;10955;10956;10957;10958;10959;10960;10961;10962;10963	10956		11	9606
DLFDFSTR	0	1	Unmodified	999.46616	0.46616048	2014	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	13	0													1				20.318	20.318	2	0.050047	15825	DP690-13	136.11	104.82			0.7785	0.94944	NaN	1	0	Median	41012000	22471000	18541000	2256	2014	2124	4480	10964	10964		0	9606
DLFDMKPFEDALR	1	1	Oxidation (M)	1611.7603	0.76029359	613	P29353	SHC1	SHC-transforming protein 1	yes	yes	0	1	1	4.5	0.5				1	1												19.719	19.719	3	0.00051991	14403	DP690-4	98.407	63.639			0.69967	0.77367	10.258	2	0	Median	22341000	12451000	9889200	2257	613	2125	4481;4482	10965;10966;10967;10968	10967	850	4	9606
DLFEDELVPLFEK	1	0	Unmodified	1592.7974	0.7973906	207	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	9	3.56				1							1	1					24.661	24.661	2	1.1626E-10	21283	DP690-12	290.51	251.94			0.82717	0.93145	16.687	2	0	Median	23418000	9896100	13522000	2258	207	2126	4483;4484;4485	10969;10970;10971;10972;10973;10974;10975;10976;10977;10978;10979;10980	10977		12	9606
DLFPYEESK	1	0	Unmodified	1126.5183	0.51825563	844	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	6	0						1											17.415	17.415	2	0.001952	11012	DP690-6	115.49	84.19			0.73628	0.8367	NaN	1	0	Median	18332000	11179000	7153400	2259	844	2127	4486	10981;10982;10983;10984	10981		4	9606
DLFPYEESKEK	2	0	Unmodified	1383.6558	0.65581174	844	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	1	6	0						1											15.002	15.002	2	0.00047702	8122	DP690-6	135.43	103.21			0.79221	0.81896	NaN	1	0	Median	30202000	15901000	14301000	2260	844	2128	4487	10985;10986;10987	10986		3	9606
DLFQVAFNR	0	1	Unmodified	1108.5665	0.56654322	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								20.457	20.457	2	0.00039628	15446	DP690-9	155.51	98.229			1.1193	1.273	14.014	2	0	Median	21634000	11021000	10613000	2261	1264	2129	4488;4489	10988;10989;10990;10991;10992;10993;10994	10994		7	9606
DLGALAQVHAENGDIVEEEQKR	1	1	Unmodified	2420.1932	0.1931801	104	O14531	DPYSL4	Dihydropyrimidinase-related protein 4	yes	yes	0	0	1	4	0				1													16.06	16.06	3	0.00016216	9940	DP690-4	102.61	79.05			0.81281	0.92703	NaN	1	0	Median	6230900	3412400	2818500	2262	104	2130	4490	10995;10996	10995		2	9606
DLGEELEALK	1	0	Unmodified	1115.571	0.57101948	668	P35579	MYH9	Myosin-9	no	no	0	0	0	2	0		1															20.072	20.072	2	0.062748	13582	DP690-2	60.019	31.811			0.97287	0.9573	NaN	1	0	Median	1854200	842690	1011500	2263	668	2131	4491	10997	10997		1	9606
DLGEELEALKTELEDTLDSTAAQQELR	1	1	Unmodified	3016.4724	0.47243423	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	10	0										2							27.016	27.016	3	3.4226E-24	25225	DP690-10	184.47	165.78			0.79311	0.86524	NaN	1	0	Median	4435700	2744000	1691700	2264	668	2132	4492;4493	10998;10999;11000;11001;11002;11003	11000		6	9606
DLGFFGIYK	1	0	Unmodified	1058.5437	0.54368251	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	11	1.41									1			2					21.651	21.651	1;2	0.0098049	16774	DP690-9	89.752	43.78			0.85323	0.95747	6.58	3	0	Median	194740000	105810000	88928000	2265	2359	2133	4494;4495;4496	11004;11005;11006;11007;11008;11009;11010	11009		7	9606
DLGIFGLYK	1	0	Unmodified	1024.5593	0.55933258	274	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	12	0												1					21.651	21.651	2	0.0058193	17814	DP690-12	96.492	33.833			0.86551	1.0321	NaN	1	0	Median	57731000	30885000	26846000	2266	274	2134	4497	11011;11012;11013;11014	11012		4	9606
DLGVLDVIFHPTQPWVFSSGADGTVR	0	1	Unmodified	2812.4184	0.41842901	1247	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	11	0											1						25.375	25.375	3	4.3316E-05	23297	DP690-11	113.6	98.842			0.62619	0.76521	NaN	1	0	Median	5108600	3361000	1747600	2267	1247	2135	4498	11015;11016;11017;11018;11019	11015		5	9606
DLGYIYFYQR	0	1	Unmodified	1336.6452	0.64518747	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	3	0			1														20.281	20.281	2	0.0032045	15433	DP690-3	94.302	59.034			0.85945	0.96311	NaN	1	0	Median	34907000	19112000	15795000	2268	746	2136	4499	11020;11021	11020		2	9606
DLHDANTDLIGR	0	1	Unmodified	1338.6528	0.65279205	882	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	10.8	2.05									2		1			1			14.3	14.3	2;3	9.0449E-05	8002	DP690-14	110.08	63.347			0.88914	1.0563	1.543	2	0	Median	184620000	93082000	91539000	2269	882	2137	4500;4501;4502;4503	11022;11023;11024;11025;11026;11027	11023		6	9606
DLHDANTDLIGRHPK	1	1	Unmodified	1700.8594	0.85943078	882	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	1	14	0														1			11.605	11.605	3	0.00013195	4194	DP690-14	111.07	111.07			0.76677	0.9656	NaN	1	0	Median	32916000	16991000	15925000	2270	882	2138	4504	11028;11029;11030;11031	11028		4	9606
DLHQGIEAASDEEDLR	0	1	Unmodified	1796.8177	0.81768512	2376	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	13	0													1				15.464	15.464	3	9.8523E-08	9421	DP690-13	168.47	144.62			0.87529	1.0314	NaN	1	0	Median	127700000	67580000	60121000	2271	2376	2139	4505	11032;11033;11034;11035	11035		4	9606
DLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINK	1	0	Unmodified	4227.1118	0.11176524	1013	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	11	0											1						25.844	25.844	3	4.9841E-07	23785	DP690-11	71.207	71.207			0.58288	0.69979	NaN	1	0	Median	4426900	2456000	1970900	2272	1013	2140	4506	11036;11037;11038;11039	11036		4	9606
DLIDDATNLVQLYHVLHPDGQSAQGAK	1	0	Unmodified	2917.457	0.45699936	1050	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	14	0														1			22.753	22.753	4	0.026382	19046	DP690-14	37.44	37.44			0.61461	0.72476	NaN	1	0	Median	7908000	4371200	3536800	2273	1050	2141	4507	11040;11041	11040		2	9606
DLIDEGHAATQLVNQLHDVVVENNLSDKQK	2	0	Unmodified	3341.6852	0.68516139	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	1	14	0														1			21.211	21.211	4	0.0047666	17259	DP690-14	46.771	46.771			0.98965	1.1096	NaN	1	0	Median	44071000	18261000	25810000	2274	662	2142	4508	11042	11042		1	9606
DLIEFGMIPEFVGR	0	1	Oxidation (M)	1637.8123	0.81232916	287	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	1	0	12	0												4					22.929	22.929	2	0.0001151	19431	DP690-12	146.16	122.93			0.71642	0.87762	NaN	1	0	Median	4258100	2104000	2154100	2275	287	2143	4509;4510;4511;4512	11043;11044;11045;11046;11047;11048	11044	300	6	9606
DLIEFPPDDIEVVYSPR	0	1	Unmodified	2002.9888	0.9887732	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										1							22.393	22.393	2	0.005567	19989	DP690-10	106.13	66.864			NaN	NaN	NaN	0	0	Median	4349100	4349100	0	2276	1901	2144	4513	11049	11049		1	9606
DLIHDVSFDFHGR	0	1	Unmodified	1556.7372	0.73719038	1840	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	14	0														1			18.472	18.472	3	0.00028153	13608	DP690-14	130.15	103.06			NaN	NaN	NaN	0	0	Median	0	0	0	2277	1840	2145	4514	11050	11050		1	9606
DLIHGAPVGKPAANR	1	1	Unmodified	1514.8318	0.83175947	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	1	10	0										1							11.874	11.874	3	0.012372	4992	DP690-10	60.937	37.468			0.73054	0.86313	NaN	1	0	Median	196740000	110300000	86445000	2278	1285	2146	4515	11051	11051		1	9606
DLILPTIQK	1	0	Unmodified	1039.6277	0.6277465	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							18.496	18.496	2	0.0059638	14555	DP690-10	95.909	52.786			0.77066	0.95267	NaN	1	0	Median	73765000	40117000	33648000	2279	1782	2147	4516	11052;11053	11052		2	9606
DLINLAK	1	0	Unmodified	785.4647	0.46470391	558	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	14	0														1			16.615	16.615	2	0.010442	11199	DP690-14	126.24	18.005			NaN	NaN	NaN	0	0	Median	4343200	0	4343200	2280	558	2148	4517	11054;11055	11055		2	9606
DLIVTPATILK	1	0	Unmodified	1182.7224	0.72237516	888	P54687	BCAT1	Branched-chain-amino-acid aminotransferase, cytosolic	yes	yes	0	0	0	6	0						1											20.444	20.444	2	0.0062329	14552	DP690-6	85.807	26.827			0.79706	0.91069	NaN	1	0	Median	8780300	4817100	3963200	2281	888	2149	4518	11056;11057;11058;11059	11057		4	9606
DLKDYFSK	2	0	Unmodified	1014.5022	0.50221163	1243	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	1	14	0														1			15.964	15.964	2	0.016937	10214	DP690-14	125.31	125.31			0.90381	1.0112	NaN	1	0	Median	86148000	46042000	40106000	2282	1243	2150	4519	11060	11060		0	9606
DLKPENLLLASK	2	0	Unmodified	1339.7711	0.77111627	1223;1224	Q13555;Q13554;Q9UQM7;Q13557	CAMK2G;CAMK2B;CAMK2A;CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit alpha;Calcium/calmodulin-dependent protein kinase type II subunit delta	no	no	0	0	1	12	0												1					17.25	17.25	2	0.0078279	12190	DP690-12	94.538	5.4586			0.78583	0.88161	NaN	1	0	Median	154120000	85482000	68639000	2283	1223;1224	2151	4520	11061;11062;11063	11061		3	9606
DLKPQNLLIDDKGTIK	3	0	Unmodified	1810.02	0.020013746	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	2	10	4						1								1			15.948	15.948	3	2.5745E-09	10129	DP690-14	188.9	173.05			0.94842	0.96033	24.099	2	0	Median	471900000	243550000	228340000	2284	391	2152	4521;4522	11064;11065;11066;11067;11068	11064		5	9606
DLKPSNIFLVDTK	2	0	Unmodified	1488.8188	0.81879474	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	1	13	1.41												2			1		18.195	18.195	2;3	7.3211E-05	13454	DP690-12	164.13	138.4			0.74762	0.83884	10.733	3	0	Median	170000000	96528000	73475000	2285	538	2153	4523;4524;4525	11069;11070;11071;11072;11073;11074;11075	11073		7	9606
DLKPSNLAVNEDCELK	2	0	Unmodified	1843.8986	0.89857798	1357	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	1	6	0						1											15.3	15.3	3	0.0076362	8512	DP690-6	65.511	49.504			0.47218	0.48812	NaN	1	0	Median	8189200	5888500	2300700	2286	1357	2154	4526	11076	11076		1	9606
DLKPSNLLLNTTCDLK	2	0	Unmodified	1843.9713	0.97134899	610	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	1	6	0						1											18.467	18.467	3	9.8588E-05	12322	DP690-6	114.63	0			0.72802	0.7526	NaN	1	0	Median	15391000	8549500	6841900	2287	610	2155	4527	11077;11078;11079;11080	11078		4	9606
DLKPVLDSYVFNDGSSR	1	1	Unmodified	1910.9374	0.93740633	1958	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	1	10.3	3.77					1								2				18.956	18.956	2;3	7.6926E-12	14088	DP690-13	212.83	147.59			0.85345	0.94087	15.61	3	0	Median	208800000	113190000	95609000	2288	1958	2156	4528;4529;4530	11081;11082;11083;11084;11085;11086;11087;11088;11089;11090;11091	11082		11	9606
DLLDDLKSELTGK	2	0	Unmodified	1445.7613	0.76133944	427	P08758	ANXA5	Annexin A5	yes	yes	0	0	1	7	0							2										23.101	23.101	2;3	0.0011141	18216	DP690-7	114.86	91.434			1.8867	2.0172	NaN	1	0	Median	2939000	508290	2430700	2289	427	2157	4531;4532	11092;11093;11094	11093		3	9606
DLLDDLKSELTGKFEK	3	0	Unmodified	1849.9673	0.96730947	427	P08758	ANXA5	Annexin A5	yes	yes	0	0	2	7	0							1										22.329	22.329	3	0.0030956	17396	DP690-7	86.539	86.539			1.532	1.6839	NaN	1	0	Median	2819100	1246500	1572600	2290	427	2158	4533	11095	11095		1	9606
DLLDLLVEAK	1	0	Unmodified	1127.6438	0.64379049	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	9.29	3.61				2					1		2	1		1			24.27	24.27	2	3.5561E-05	21993	DP690-11	174.41	174.41			0.86902	1.0441	5.4492	4	0	Median	65045000	31760000	33284000	2291	96	2159	4534;4535;4536;4537;4538;4539;4540	11096;11097;11098;11099;11100;11101;11102;11103;11104;11105;11106;11107;11108;11109;11110;11111;11112;11113;11114;11115;11116;11117;11118;11119;11120;11121	11098		26	9606
DLLDTVLPHLYNETK	1	0	Unmodified	1769.92	0.91996535	1576	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	3	0			2														21.872	21.872	2;3	1.2163E-09	17368	DP690-3	200.93	200.93			1.0308	1.0801	15.542	2	0	Median	8380800	4182100	4198700	2292	1576	2160	4541;4542	11122;11123;11124;11125;11126;11127;11128	11124		7	9606
DLLFDPLGGVK	1	0	Unmodified	1172.6441	0.64412484	2337	Q9UGR2	ZC3H7B	Zinc finger CCCH domain-containing protein 7B	yes	yes	0	0	0	11	0											1						22.247	22.247	2	0.047816	19719	DP690-11	62.823	62.823			0.9465	1.1538	NaN	1	0	Median	31510000	15953000	15556000	2293	2337	2161	4543	11129	11129		1	9606
DLLFILTAK	1	0	Unmodified	1032.6219	0.62193284	1355	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	3	0			1														22.942	22.942	2	0.019309	18578	DP690-3	80.165	35.473			1.4478	1.5139	NaN	1	0	Median	3323400	1283700	2039700	2294	1355	2162	4544	11130;11131;11132	11132		3	9606
DLLFQALGR	0	1	Unmodified	1031.5764	0.57637963	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	11.5	2.93				1					1	1		5	1	1		1	21.457	21.457	2	0.00062599	15548	DP690-4	145.04	66.429			0.951	1.1079	14.287	7	0	Median	1516399999.9999998	780460000	735960000	2295	2210	2163	4545;4546;4547;4548;4549;4550;4551;4552;4553;4554;4555	11133;11134;11135;11136;11137;11138;11139;11140;11141;11142;11143;11144;11145;11146;11147;11148;11149;11150;11151;11152;11153;11154;11155;11156;11157;11158;11159;11160;11161;11162;11163;11164;11165;11166;11167;11168;11169	11156		37	9606
DLLGASGLMLLLPPK	1	0	Oxidation (M)	1552.8899	0.8898512	204	O60318	MCM3AP	Germinal-center associated nuclear protein	yes	yes	0	1	0	10	0										1							23.514	23.514	2	0.0017721	21364	DP690-10	96.64	96.64			0.52351	0.63453	NaN	1	0	Median	6957700	4514700	2443000	2296	204	2164	4556	11170;11171;11172	11172	213	3	9606
DLLGQDVFLIGPPGPLR	0	1	Unmodified	1806.004	0.003969751	9	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	10	0										1							24.043	24.043	2	3.7827E-07	21984	DP690-10	144.28	124.08			0.5817	0.71245	NaN	1	0	Median	5014400	3311700	1702700	2297	9	2165	4557	11173;11174;11175;11176	11173		4	9606
DLLHPSLEEEK	1	0	Unmodified	1308.6561	0.65614609	1522	Q71UM5	RPS27L	40S ribosomal protein S27-like	yes	yes	0	0	0	13.3	3.77								1								2	15.647	15.647	2;3	2.5741E-06	9320	DP690-16	209.73	209.73			0.85996	0.95257	28.288	2	0	Median	267700000	149840000	117870000	2298	1522	2166	4558;4559;4560	11177;11178;11179;11180;11181;11182;11183;11184	11178		8	9606
DLLHPSLEEEKKK	3	0	Unmodified	1564.8461	0.84607213	1522	Q71UM5	RPS27L	40S ribosomal protein S27-like	yes	yes	0	0	2	14.4	3.2								1								4	12.302	12.302	2;3	3.0972E-05	5050	DP690-16	190.78	157.47			0.8315	0.92663	NaN	1	0	Median	18251000	10234000	8016700	2299	1522	2167	4561;4562;4563;4564;4565	11185;11186;11187;11188;11189	11185		5	9606
DLLHPSPEEEK	1	0	Unmodified	1292.6248	0.62484596	729	P42677	RPS27	40S ribosomal protein S27	yes	yes	0	0	0	12	4								1								1	13.474	13.474	2	0.00014964	6484	DP690-16	169.41	121.45			0.74041	0.78831	NaN	1	0	Median	209920000	115990000	93932000	2300	729	2168	4566;4567	11190;11191;11192;11193;11194;11195	11192		6	9606
DLLHPSPEEEKR	1	1	Unmodified	1448.726	0.72595699	729	P42677	RPS27	40S ribosomal protein S27	yes	yes	0	0	1	11	3.56								1	1							1	11.982	11.982	3	1.3296E-08	4627	DP690-16	208.17	177.69			0.78375	0.80128	31.123	3	0	Plateau	293590000	163940000	129650000	2301	729	2169	4568;4569;4570	11196;11197;11198;11199;11200;11201;11202;11203;11204;11205;11206;11207	11196		12	9606
DLLHPSPEEEKRK	2	1	Unmodified	1576.8209	0.82092001	729	P42677	RPS27	40S ribosomal protein S27	yes	yes	0	0	2	10.5	3.2								1	2							1	10.506	10.506	3	1.2896E-05	2782	DP690-9	148.13	125.64			0.78719	0.86962	6.3285	3	0	Plateau	2111399999.9999998	1155200000	956280000	2302	729	2170	4571;4572;4573;4574	11208;11209;11210;11211;11212;11213;11214;11215;11216;11217;11218;11219	11217		12	9606
DLLILQQLLMR	0	1	Unmodified	1354.8006	0.80064226	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	10.5	0.5										1	1						25.313	25.313	2	0.00039065	23289	DP690-11	117.04	100.32			0.88354	1.0618	13.28	2	0	Median	6512100	3234300	3277900	2303	1156	2171	4575;4576	11220;11221;11222;11223	11222		4	9606
DLLILQQLLMR	0	1	Oxidation (M)	1370.7956	0.79555688	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	1	0	8.83	2.67			1						1	3	1						24.48	24.48	2	0.00071691	22232	DP690-11	115.7	91.355			0.91703	1.1144	3.8688	2	0	Median	32849000	29400000	3448900	2304	1156	2171	4577;4578;4579;4580;4581;4582	11224;11225;11226;11227;11228;11229;11230;11231;11232;11233;11234	11229	1805	11	9606
DLLLNTMSQEEK	1	0	Unmodified	1419.6915	0.69154532	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.67	0.471									1	2							18.244	18.244	2	5.0198E-17	12646	DP690-9	196.27	129.31			NaN	NaN	NaN	0	0	Median	30634000	0	30634000	2305	1046	2172	4583;4584;4585	11235;11236;11237;11238	11238		4	9606
DLLLNTMSQEEK	1	0	Oxidation (M)	1435.6865	0.68645994	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									2								16.908	16.908	2	6.0847E-05	12690	DP690-9	181.87	132.81			0.87635	1.033	5.7509	2	0	Median	188940000	98242000	90694000	2306	1046	2172	4586;4587	11239;11240;11241;11242;11243;11244;11245;11246;11247	11246	1590	9	9606
DLLNMYIETEGK	1	0	Oxidation (M)	1440.6806	0.68064628	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	1	0	3	0			1														19.485	19.485	2	0.0036705	14486	DP690-3	120.06	85.307			NaN	NaN	NaN	0	0	Median	5808800	5808800	0	2307	1778	2173	4588	11248;11249	11248	2338	2	9606
DLLPGPVTLVMER	0	1	Unmodified	1438.7854	0.78538612	1568	Q86U90	YRDC	YrdC domain-containing protein, mitochondrial	yes	yes	0	0	0	7	0							1										22.234	22.234	2	0.044084	17295	DP690-7	60.598	60.598			0.66691	0.75087	NaN	1	0	Median	2577400	1481800	1095600	2308	1568	2174	4589	11250	11250		1	9606
DLLPSDMAVALLEAQAGTGHIIDPATSAR	0	1	Oxidation (M)	2948.4913	0.49133595	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	10.2	1.07									2	2	1	1					22.482	22.482	3	4.2897E-12	19737	DP690-10	148.26	125.54			0.74525	0.88429	10.502	5	0	Median	351710000	205210000	146500000	2309	1319	2175	4590;4591;4592;4593;4594;4595	11251;11252;11253;11254;11255;11256;11257;11258;11259;11260;11261;11262;11263;11264;11265;11266;11267;11268;11269;11270	11257	2016	20	9606
DLLPSDMAVALLEAQAGTGHIIDPATSAR	0	1	Unmodified	2932.4964	0.49642133	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.33	0.471									2	1							24.102	24.102	3	2.4348E-08	21961	DP690-10	133.91	122.11			0.71398	0.89065	10.661	3	0	Plateau	50719000	28403000	22316000	2310	1319	2175	4596;4597;4598	11271;11272;11273;11274;11275;11276;11277;11278	11272		7	9606
DLLQFFKPR	1	1	Unmodified	1162.6499	0.64987892	1804	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	1	11	0											1						20.12	20.12	2	0.0029206	16732	DP690-11	135.77	83.912			0.86772	1.0692	NaN	1	0	Median	22091000	11706000	10385000	2311	1804	2176	4599	11279;11280	11280		2	9606
DLLQQLLPK	1	0	Unmodified	1066.6386	0.63864553	646	P32780	GTF2H1	General transcription factor IIH subunit 1	yes	yes	0	0	0	12	0												1					22.066	22.066	2	0.0059872	18303	DP690-12	95.815	41.093			0.72572	0.87311	NaN	1	0	Median	17951000	9587300	8364100	2312	646	2177	4600	11281;11282;11283;11284	11283		4	9606
DLLSHENAATLNDVK	1	0	Unmodified	1638.8213	0.82131394	1689	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	yes	yes	0	0	0	15	0															1		15.401	15.401	3	0.023827	9325	DP690-15	76.574	49.116			NaN	NaN	NaN	0	0	Median	12078000	12078000	0	2313	1689	2178	4601	11285	11285		1	9606
DLLTDEPFSR	0	1	Unmodified	1191.5772	0.57716749	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	12	0												1					19.026	19.026	2	8.0441E-05	14555	DP690-12	193.41	136.23			0.73609	0.8269	NaN	1	0	Median	218010000	126320000	91684000	2314	1200	2179	4602	11286;11287	11286		2	9606
DLMACAQTGSGK	1	0	Oxidation (M)	1253.538	0.53802156	96	O00571;O15523;Q9NQI0	DDX3X;DDX3Y;DDX4	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4	yes	no	0	1	0	11	0											1						10.804	10.804	2	0.00046265	3243	DP690-11	159.34	125.16			0.89968	1.0271	NaN	1	0	Median	182870000	97594000	85273000	2315	96	2180	4603	11288;11289;11290;11291;11292	11289	104	5	9606
DLMACAQTGSGK	1	0	Unmodified	1237.5431	0.54310694	96	O00571;O15523;Q9NQI0	DDX3X;DDX3Y;DDX4	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4	yes	no	0	0	0	11.5	0.5											1	1					13.401	13.401	2	6.6979E-05	7110	DP690-11	133.81	76.218			0.88691	1.0278	6.3935	2	0	Median	261350000	130770000	130590000	2316	96	2180	4604;4605	11293;11294;11295;11296;11297;11298;11299;11300	11294		8	9606
DLMPHDLAR	0	1	Oxidation (M)	1082.5179	0.51787847	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	1	0	13	0													1				11.848	11.848	2	0.072531	4381	DP690-13	69.423	42.821			0.68295	0.82227	NaN	1	0	Median	84741000	48603000	36138000	2317	894	2181	4606	11301	11301		1	9606
DLNCVPEIADTLGAVAK	1	0	Unmodified	1784.8978	0.8978497	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	4	0				1													21.627	21.627	2	0.00053863	16498	DP690-4	103.11	75.555			2.0287	2.2183	NaN	1	0	Median	17579000	7297900	10281000	2318	111	2182	4607	11302;11303	11303		2	9606
DLNLMAPGLTIQAVR	0	1	Unmodified	1610.8814	0.88141177	257	O75477	ERLIN1	Erlin-1	yes	yes	0	0	0	14	0														1			21.469	21.469	2	5.4918E-05	17420	DP690-14	155.88	48.429			NaN	NaN	NaN	0	0	Median	10114000	10114000	0	2319	257	2183	4608	11304;11305	11304		2	9606
DLNMDCIIAEIK	1	0	Oxidation (M)	1449.6844	0.68435145	26	CON__O43790;CON__Q14533;O43790;Q14533;CON__P78386;P78386	KRT86;KRT81;KRT85	Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb1;Keratin, type II cuticular Hb5	yes	no	0	1	0	7	0							1										19.102	19.102	2	0.0031356	13518	DP690-7	96.015	73.435		+	0.82991	0.90825	NaN	1	0	Median	12352000	6070100	6281600	2320	26	2184	4609	11306;11307;11308	11308	26	3	9606
DLNMDCIIAEIK	1	0	Unmodified	1433.6894	0.68943683	26	CON__O43790;CON__Q14533;O43790;Q14533;CON__P78386;P78386	KRT86;KRT81;KRT85	Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb1;Keratin, type II cuticular Hb5	yes	no	0	0	0	7	0							1										22.567	22.567	2	0.005337	17579	DP690-7	113.69	58.903		+	NaN	NaN	NaN	0	0	Median	2492400	2492400	0	2321	26	2184	4610	11309;11310	11310		2	9606
DLNSDMDSILASLK	1	0	Unmodified	1520.7392	0.73922379	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	11	0											1						25.088	25.088	2	2.3247E-05	22927	DP690-11	193.22	170.53			0.88448	1.0895	NaN	1	0	Median	18429000	10281000	8147900	2322	713	2185	4611	11311;11312;11313;11314;11315	11311		5	9606
DLNSDMDSILASLK	1	0	Oxidation (M)	1536.7341	0.73413841	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	1	0	8.33	3.77			1								2						22.131	22.131	2	0.0023028	15977	DP690-3	95.417	49.011			0.7525	0.83504	11.254	2	0	Median	18797000	4630200	14166000	2323	713	2185	4612;4613;4614	11316;11317;11318;11319;11320;11321	11320	1042	6	9606
DLNSQLEYLR	0	1	Unmodified	1249.6303	0.63026569	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							18.79	18.79	2	0.018376	14981	DP690-10	104.17	42.574			NaN	NaN	NaN	0	0	Median	0	0	0	2324	13	2186	4615	11322	11322		1	9606
DLNYCFSGMSDHR	0	1	Oxidation (M)	1616.6348	0.6347755	639;901	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	1	0	13.8	0.898													3	1	2		14.693	14.693	2;3	0.00034684	7840	DP690-13	118.61	91.126			0.85217	1.0109	12.987	5	0	Median	2530900000	1359100000	1171800000	2325	639;901	2187	4616;4617;4618;4619;4620;4621	11323;11324;11325;11326;11327;11328;11329;11330;11331;11332;11333;11334;11335;11336;11337;11338;11339;11340;11341	11329	887	19	9606
DLNYCFSGMSDHR	0	1	Unmodified	1600.6399	0.63986087	639;901	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	11.8	3.96					2								2	2	2		16.089	16.089	2;3	9.0845E-06	10238	DP690-13	193.3	156.88			0.85733	0.89656	10.917	4	0	Linear	1403800000	750800000	653050000	2326	639;901	2187	4622;4623;4624;4625;4626;4627;4628;4629	11342;11343;11344;11345;11346;11347;11348;11349;11350;11351;11352;11353;11354;11355	11348		14	9606
DLPDEIPLPLVIGTK	1	0	Unmodified	1618.9182	0.91817444	1445	Q5TKA1	LIN9	Protein lin-9 homolog	yes	yes	0	0	0	12	0												1					23.339	23.339	2	0.0029641	19872	DP690-12	85.672	85.672			0.5531	0.67018	NaN	1	0	Median	3881600	2433100	1448400	2327	1445	2188	4630	11356;11357;11358;11359	11357		4	9606
DLPDVQELITQVR	0	1	Unmodified	1524.8148	0.814772	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	8	4				1								1					22.402	22.402	2	4.8407E-05	18783	DP690-12	176.48	131.62			0.78142	0.91367	1.689	2	0	Median	43748000	23926000	19822000	2328	2342	2189	4631;4632	11360;11361;11362;11363;11364;11365	11362		6	9606
DLPEHAVLK	1	0	Unmodified	1020.5604	0.56039521	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	7	4			1								1						12.821	12.821	2	0.0038473	6132	DP690-11	104.44	48.761			0.84317	0.87695	5.3766	2	0	Median	649780000	345790000	303980000	2329	1078	2190	4633;4634	11366;11367;11368;11369;11370;11371;11372;11373;11374	11368		9	9606
DLPFETLEVEAK	1	0	Unmodified	1389.7028	0.70276193	2263	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	14	0														1			20.454	20.454	2	4.7567E-05	16187	DP690-14	144.77	96.677			0.7679	0.93312	NaN	1	0	Median	54830000	30700000	24130000	2330	2263	2191	4635	11375;11376	11375		2	9606
DLPLLLFR	0	1	Unmodified	985.59605	0.59605244	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	9.67	4.03				1								1	1				23.101	23.101	2	0.04118	19190	DP690-13	128.38	89.576			1.2108	1.3143	27.616	3	0	Plateau	109650000	51099000	58554000	2331	167	2192	4636;4637;4638	11377;11378;11379	11378		0	9606
DLPSADSVQYR	0	1	Unmodified	1249.5939	0.59388018	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										2							15.026	15.026	2	0.011197	9596	DP690-10	76.17	25.697			0.81489	1.0062	NaN	1	0	Median	124140000	78261000	45879000	2332	1783	2193	4639;4640	11380;11381	11380		2	9606
DLPTIPGVTSPSSDEPPMEASQSHLR	0	1	Oxidation (M)	2763.3021	0.3021382	1220	Q13541	EIF4EBP1	Eukaryotic translation initiation factor 4E-binding protein 1	yes	yes	0	1	0	8	0								1									17.763	17.763	3	0.075626	11207	DP690-8	47.648	19.349			NaN	NaN	NaN	0	0	Median	1850900	1850900	0	2333	1220	2194	4641	11382	11382		1	9606
DLPVTEAVFSALVTGHAR	0	1	Unmodified	1881.9949	0.99486163	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	8	3.56			1							1	1						22.588	22.588	3	3.64E-08	20182	DP690-10	144.15	144.15			0.77703	0.89905	10.942	2	0	Median	58396000	27800000	30596000	2334	732	2195	4642;4643;4644	11383;11384;11385;11386;11387;11388	11386		6	9606
DLQANVEHLVQK	1	0	Unmodified	1392.7361	0.73612775	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	3	0			1														16.758	16.758	2	6.623E-05	10967	DP690-3	129.82	92.311			0.94353	0.99408	NaN	1	0	Median	41779000	21340000	20439000	2335	415	2196	4645	11389;11390	11389		2	9606
DLQCPVLQSSELEGTPEVSCR	0	1	Unmodified	2403.1046	0.10462437	276	O75818	RPP40	Ribonuclease P protein subunit p40	yes	yes	0	0	0	14	0														1			18.648	18.648	2	2.7211E-41	13836	DP690-14	248.81	215.53			1.0883	1.3198	NaN	1	0	Median	22099000	8547500	13551000	2336	276	2197	4646	11391;11392;11393;11394	11392		4	9606
DLQEFIPLINQITAK	1	0	Unmodified	1741.9614	0.96143623	182	O43592	XPOT	Exportin-T	yes	yes	0	0	0	3	0			2														24.571	24.571	2	0.006766	20283	DP690-3	126.5	67.718			NaN	NaN	NaN	0	0	Median	0	0	0	2337	182	2198	4647;4648	11395;11396	11396		2	9606
DLQEVIELTK	1	0	Unmodified	1186.6445	0.64451877	281	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	0	11	4							1								1		20.082	20.082	2	3.7091E-05	15198	DP690-15	187.22	120.79			0.5371	0.62149	NaN	1	0	Median	55586000	47982000	7604800	2338	281	2199	4649;4650	11397;11398;11399;11400;11401;11402	11398		6	9606
DLQGLTVEHAIDSFR	0	1	Unmodified	1699.8529	0.85294842	172	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	11	0											3						20.095	20.095	2;3	5.5523E-05	16723	DP690-11	119.54	79.666			0.79858	0.95352	NaN	1	0	Median	46320000	24654000	21667000	2339	172	2200	4651;4652;4653	11403;11404;11405;11406;11407;11408	11404		6	9606
DLQHPNEFIR	0	1	Unmodified	1267.6309	0.63093439	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	8.33	3.77			1								2						14.645	14.645	2;3	9.453E-05	8166	DP690-3	132.88	99.876			0.82243	0.96663	70.549	3	0	Median	306190000	156380000	149810000	2340	877	2201	4654;4655;4656	11409;11410;11411;11412;11413	11413		5	9606
DLQLQCEANVR	0	1	Unmodified	1344.6456	0.64559818	2102	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	2	0		1															15.008	15.008	2	0.0013868	7756	DP690-2	103.34	53.924			1.0527	1.0746	NaN	1	0	Median	3177300	1408200	1769100	2341	2102	2202	4657	11414	11414		1	9606
DLQLQILR	0	1	Unmodified	997.59203	0.59202969	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	11	0											1						19.213	19.213	2	0.057342	15334	DP690-11	110.61	59.276			0.96567	1.1624	NaN	1	0	Median	76941000	36688000	40253000	2342	295	2203	4658	11415	11415		0	9606
DLQMVNISLR	0	1	Unmodified	1187.6332	0.63324258	1948	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	14	0														1			19.269	19.269	2	0.00024639	14659	DP690-14	125.97	29.477			0.93928	1.1327	NaN	1	0	Median	64825000	34327000	30498000	2343	1948	2204	4659	11416;11417;11418;11419	11417		4	9606
DLQNVNITLR	0	1	Unmodified	1184.6513	0.65133548	660	P35232	PHB	Prohibitin	yes	yes	0	0	0	15	0															1		17.178	17.178	2	0.00015838	11654	DP690-15	134.23	58.058			0.82659	0.9021	NaN	1	0	Median	138080000	74634000	63449000	2344	660	2205	4660	11420;11421	11421		2	9606
DLQQYVSVVVLDEVGLAEDSPK	1	0	Unmodified	2402.2217	0.22168626	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									3								26.515	26.515	2	9.592E-05	22105	DP690-9	145.94	96.453			NaN	NaN	NaN	0	0	Median	0	0	0	2345	1453	2206	4661;4662;4663	11422;11423;11424	11424		3	9606
DLQYHNLDLFK	1	0	Unmodified	1404.7038	0.70376498	2268	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	12	0												1					18.345	18.345	2	0.00014202	13607	DP690-12	138.22	86.691			0.83412	1.0025	NaN	1	0	Median	24817000	13924000	10893000	2346	2268	2207	4664	11425	11425		1	9606
DLRPATDYHVR	0	2	Unmodified	1341.6789	0.67894722	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	1	10	0										1							11.901	11.901	3	0.007882	4988	DP690-10	92.792	56.345			NaN	NaN	NaN	0	0	Median	159600000	159600000	0	2347	1399	2208	4665	11426;11427	11426		2	9606
DLRPSALPFVASLIR	0	2	Unmodified	1653.9566	0.95662563	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	1	9.5	0.5									1	1							22.07	22.07	3	0.0012536	19486	DP690-10	85.006	55.878			0.64278	0.73035	0.015465	2	0	Median	25735000	15763000	9971000	2348	2483	2209	4666;4667	11428;11429;11430	11428		3	9606
DLSAAGIGLLAAATQSLSMPASLGR	0	1	Oxidation (M)	2386.2526	0.25260923	735	P43243	MATR3	Matrin-3	yes	yes	0	1	0	10.4	0.728									1	2	4						26.547	26.547	2	4.4178000000000005E-45	24139	DP690-11	234.36	217.42			0.70377	0.84024	15.3	3	0	Median	37797000	22197000	15600000	2349	735	2210	4668;4669;4670;4671;4672;4673;4674	11431;11432;11433;11434;11435;11436;11437;11438;11439;11440;11441;11442;11443;11444;11445;11446;11447;11448	11435	1080	18	9606
DLSAAGIGLLAAATQSLSMPASLGR	0	1	Unmodified	2370.2577	0.25769461	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											2						27.212	27.212	2	1.4376E-85	25055	DP690-11	340.32	307.85			0.7651	0.93936	NaN	1	0	Median	15711000	9493000	6218000	2350	735	2210	4675;4676	11449;11450;11451;11452;11453	11450		5	9606
DLSDGIHVVK	1	0	Unmodified	1081.5768	0.57677356	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	12	0												1					14.185	14.185	2	0.033284	7955	DP690-12	69.812	34.193			0.83904	0.99199	NaN	1	0	Median	81725000	43872000	37853000	2351	1131	2211	4677	11454;11455	11455		2	9606
DLSELGSVR	0	1	Unmodified	974.50327	0.50327426	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	7	3.56		1							1	1							16.151	16.151	2	0.00021935	11203	DP690-10	164.53	83.343			0.83287	0.92245	16.883	3	0	Median	706720000	392330000	314400000	2352	1319	2212	4678;4679;4680	11456;11457;11458;11459;11460;11461;11462	11456		7	9606
DLSFFGGLLR	0	1	Unmodified	1123.6026	0.60259438	1385	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	7	4			1								1						23.743	23.743	2	0.0033377	19407	DP690-3	93.429	53.361			1.2116	1.3099	NaN	1	0	Median	3844600	2869300	975310	2353	1385	2213	4681;4682	11463;11464;11465;11466	11464		4	9606
DLSGSAQNSGCLSR	0	1	Unmodified	1450.6471	0.64705474	2198	Q9NR82	KCNQ5	Potassium voltage-gated channel subfamily KQT member 5	yes	yes	0	0	0	9	0									2								12.649	12.649	2	0.00079662	5386	DP690-9	139.32	101.02			NaN	NaN	NaN	0	0	Median	2952300	2952300	0	2354	2198	2214	4683;4684	11467;11468;11469	11468		3	9606
DLSHIGDAVVISCAK	1	0	Unmodified	1583.7977	0.79774172	472	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	15	0															1		17.077	17.077	3	0.001156	11501	DP690-15	83.869	58.326			0.80033	0.92963	NaN	1	0	Median	44172000	22411000	21761000	2355	472	2215	4685	11470;11471	11470		2	9606
DLSHILGIPQSWR	0	1	Unmodified	1520.81	0.80996139	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								20.84	20.84	3	0.0090541	15953	DP690-9	67.952	67.952			0.93239	1.1409	NaN	1	0	Median	2167700	1006500	1161100	2356	1453	2216	4686	11472;11473	11473		2	9606
DLSILSYLSQLQPPMPK	1	0	Oxidation (M)	1945.0231	0.023050213	1430	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	1	0	11	0											1						25.078	25.078	2	7.297E-06	22991	DP690-11	132.59	90.112			0.6224	0.75897	NaN	1	0	Median	6554700	3944300	2610300	2357	1430	2217	4687	11474;11475;11476;11477	11477	2148	4	9606
DLSILSYLSQLQPPMPK	1	0	Unmodified	1929.0281	0.028135591	1430	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	0	0	11	0											1						25.933	25.933	2	6.3558E-05	23906	DP690-11	123.84	104.06			0.61457	0.73114	NaN	1	0	Median	3516500	2089500	1427000	2358	1430	2217	4688	11478;11479;11480	11479		3	9606
DLSLDDFK	1	0	Unmodified	951.45493	0.45492709	620	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	15	0															1		18.806	18.806	2	0.040596	13700	DP690-15	116.9	50.474			0.66067	0.77635	NaN	1	0	Median	33282000	20427000	12855000	2359	620	2218	4689	11481	11481		0	9606
DLSLDDFKGK	2	0	Unmodified	1136.5714	0.57135383	620	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	1	15	0															1		16.038	16.038	2	0.057372	10116	DP690-15	76.827	27.404			0.70816	0.81089	NaN	1	0	Median	43884000	24765000	19120000	2360	620	2219	4690	11482	11482		1	9606
DLSMSEEDQMMR	0	1	3 Oxidation (M)	1518.5636	0.56364397	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	3	0	2	0		1															11.108	11.108	2	0.00073931	3247	DP690-2	112.75	104.82			1.3069	1.3492	NaN	1	0	Median	4071700	1965600	2106100	2361	1555	2220	4691	11483;11484;11485;11486	11486	2227;2228;2229	4	9606
DLSNINCEELGPLPPGWEIR	0	1	Unmodified	2308.1158	0.1157814	2156	Q9HAU4	SMURF2	E3 ubiquitin-protein ligase SMURF2	yes	yes	0	0	0	11	0											3						22.184	22.184	2	7.0489E-39	19537	DP690-11	234.22	198.92			NaN	NaN	NaN	0	0	Median	12775000	6566700	6208100	2362	2156	2221	4692;4693;4694	11487;11488;11489;11490;11491;11492	11488		6	9606
DLSSEELAAFQK	1	0	Unmodified	1336.6511	0.65106071	2463	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	15	0															1		18.524	18.524	2	1.2046E-07	13359	DP690-15	199.89	170.34			0.84307	0.99489	NaN	1	0	Median	22854000	12882000	9971700	2363	2463	2222	4695	11493;11494;11495;11496	11496		4	9606
DLSSVQTLLTK	1	0	Unmodified	1203.6711	0.67106787	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10.5	0.5										1	1						19.594	19.594	2	0.00020513	16188	DP690-10	147.2	101.83			0.41388	0.50783	30.234	2	0	Median	116280000	84766000	31513000	2364	1236	2223	4696;4697	11497;11498;11499;11500	11497		4	9606
DLSTPAQYALMEK	1	0	Oxidation (M)	1481.7072	0.70719538	2059	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	1	0	15	0															1		17.342	17.342	2	0.0019958	11759	DP690-15	100.69	67.462			0.73814	0.82973	NaN	1	0	Median	98534000	54701000	43833000	2365	2059	2224	4698	11501;11502;11503;11504	11504	2576	4	9606
DLSTPAQYALMEK	1	0	Unmodified	1465.7123	0.71228076	2059	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	15	0															1		18.402	18.402	2	0.0012917	13336	DP690-15	109.16	55.663			0.73676	0.86864	NaN	1	0	Median	9574000	6139200	3434800	2366	2059	2224	4699	11505;11506;11507	11507		3	9606
DLSYCLSGMYDHR	0	1	Oxidation (M)	1631.6708	0.67082665	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	13.2	3.27					1								2	1	3	1	15.507	15.507	2;3	9.439E-05	8637	DP690-5	125.74	113.53			0.91272	0.97837	5.1348	4	0	Linear	1395300000	706390000	688870000	2367	856	2225	4700;4701;4702;4703;4704;4705;4706;4707	11508;11509;11510;11511;11512;11513;11514;11515;11516;11517;11518;11519;11520;11521;11522;11523;11524;11525;11526;11527;11528;11529	11526	1297	22	9606
DLSYCLSGMYDHR	0	1	Unmodified	1615.6759	0.67591203	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	13.3	0.471													2	1			17.433	17.433	2;3	1.6667E-05	12054	DP690-13	145.09	134.04			0.8754	0.95929	3.8213	2	0	Median	1041199999.9999999	541740000	499480000	2368	856	2225	4708;4709;4710	11530;11531;11532;11533;11534;11535;11536;11537;11538	11533		9	9606
DLTDYLMK	1	0	Unmodified	997.47903	0.47903335	926;1023;1029;1408	P60709;P63261;P68032;P68133;P63267;P62736;Q562R1	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	0	10	2.92						1			1		1			1			22.062	22.062	1	1.6904E-06	13805	DP690-6	159.04	79.586			1.3615	1.6803	NaN	1	0	Median	35192000	5409000	29783000	2369	926;1023;1029;1408	2226	4711;4712;4713;4714	11539;11540;11541;11542;11543	11542		4	9606
DLTDYLMK	1	0	Oxidation (M)	1013.4739	0.47394797	926;1023;1029;1408	P60709;P63261;P68032;P68133;P63267;P62736;Q562R1	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	1	0	15	0															1		17.96	17.96	1	0.01298	13051	DP690-15	98.997	64.81			0.83183	0.96197	NaN	1	0	Median	49217000	26644000	22573000	2370	926;1023;1029;1408	2226	4715	11544	11544	1423	0	9606
DLTDYLMKILTER	1	1	Oxidation (M)	1625.8335	0.83345853	926;1023;1029;1408	P60709;P63261;P68032;P68133;P63267;P62736;Q562R1	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	1	1	14	0														2			23.69	23.69	2;3	0.02433	20081	DP690-14	84.821	58.757			0.74156	0.89569	14.615	2	0	Median	7049300	3833800	3215500	2371	926;1023;1029;1408	2227	4716;4717	11545;11546	11545	1423	1	9606
DLTDYLMKILTER	1	1	Unmodified	1609.8385	0.83854391	926;1023;1029;1408	P60709;P63261;P68032;P68133;P63267;P62736;Q562R1	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	1	14	0														2			25.217	25.217	2;3	7.739E-05	21834	DP690-14	180.19	107.34			0.79883	0.95762	4.225	2	0	Median	5851600	3382300	2469300	2372	926;1023;1029;1408	2227	4718;4719	11547;11548;11549	11548		3	9606
DLTEYLSR	0	1	Unmodified	995.49238	0.49237523	127	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	14	0														2			18.174	18.174	2	0.00063347	13216	DP690-14	140.98	81.779			NaN	NaN	NaN	0	0	Median	71896000	0	71896000	2373	127	2228	4720;4721	11550;11551;11552	11550		3	9606
DLTGELEYATK	1	0	Unmodified	1238.603	0.60304789	2072	Q9GZP4	PITHD1	PITH domain-containing protein 1	yes	yes	0	0	0	7	0							1										18.301	18.301	2	0.00012459	12419	DP690-7	125.57	55.313			0.61294	0.65989	NaN	1	0	Median	43408000	28698000	14710000	2374	2072	2229	4722	11553;11554;11555	11553		3	9606
DLTGQVPTPVVK	1	0	Unmodified	1252.7027	0.70270235	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	9	0									1								16.143	16.143	2	0.008163	10048	DP690-9	77.533	77.533			0.98413	1.2557	NaN	1	0	Median	9650000	4855000	4795000	2375	763	2230	4723	11556;11557;11558	11557		3	9606
DLTPAVTDNDEADKK	2	0	Unmodified	1630.7686	0.76860967	914	P57772	EEFSEC	Selenocysteine-specific elongation factor	yes	yes	0	0	1	12	0												1					12.313	12.313	2	0.0021223	5271	DP690-12	139.76	98.643			NaN	NaN	NaN	0	0	Median	3964900	0	3964900	2376	914	2231	4724	11559	11559		1	9606
DLTQEMEVHAEK	1	0	Oxidation (M)	1444.6504	0.65040879	765	P46939	UTRN	Utrophin	yes	yes	0	1	0	9.5	0.5									1	1							11.166	11.166	2	0.00028147	4011	DP690-10	140.49	96.168			0.96534	1.1809	5.0375	2	0	Median	29456000	13449000	16007000	2377	765	2232	4725;4726	11560;11561;11562;11563;11564;11565;11566	11560	1138	7	9606
DLTQNTVVSINFKDPQFAEDYIFK	2	0	Unmodified	2831.4018	0.40177589	2088	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	1	11	0											1						22.271	22.271	3	0.027811	19696	DP690-11	42.454	30.225			0.71721	0.85853	NaN	1	0	Median	12998000	6740900	6257100	2378	2088	2233	4727	11567	11567		1	9606
DLTSWVTEMK	1	0	Unmodified	1208.5747	0.57472465	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							21.327	21.327	2	0.057552	18559	DP690-10	85.731	35.124			NaN	NaN	NaN	0	0	Median	2714500	2714500	0	2379	1236	2234	4728	11568	11568		1	9606
DLTTAGAVTQCYR	0	1	Unmodified	1454.6824	0.68237762	1095	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	11.5	3.5								1							1		15.364	15.364	2	1.0627E-09	9201	DP690-15	245.5	206.7			0.62841	0.71769	49.401	2	0	Median	118140000	59367000	58775000	2380	1095	2235	4729;4730	11569;11570;11571;11572;11573;11574	11570		6	9606
DLVAQAPLKPK	2	0	Unmodified	1178.7023	0.70230842	291	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	1	11	0											1						13.238	13.238	2	0.014507	6783	DP690-11	90.601	68.021			0.65926	0.76309	NaN	1	0	Median	80844000	49505000	31340000	2381	291	2236	4731	11575;11576	11575		2	9606
DLVDYITTHYK	1	0	Unmodified	1366.6769	0.67688153	256	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	5	0					1												19.483	19.483	2	0.0015348	13796	DP690-5	102.06	63.347			0.82704	0.82726	NaN	1	0	Median	17790000	6934400	10855000	2382	256	2237	4732	11577	11577		1	9606
DLVEAVAHILGIR	0	1	Unmodified	1404.8089	0.80889876	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															26.445	26.445	2	3.1089E-06	19170	DP690-2	185.33	150.8			0.71096	0.73393	NaN	1	0	Median	4070900	2204400	1866500	2383	789	2238	4733	11578;11579;11580;11581	11581		4	9606
DLVGLELSPALYPMLFNK	1	0	Oxidation (M)	2035.07	0.070000406	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	1	0	9.5	0.5									1	1							24.063	24.063	2	0.0013063	22088	DP690-10	92.781	76.309			0.36575	0.44171	NaN	1	0	Median	5249700	3351600	1898100	2384	550	2239	4734;4735	11582;11583;11584;11585;11586	11583	713	5	9606
DLVISLSGILHK	1	0	Unmodified	1293.7656	0.76563696	823	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	2	0		1															20.685	20.685	2	0.022315	14333	DP690-2	96.342	48.518			NaN	NaN	NaN	0	0	Median	663090	0	663090	2385	823	2240	4736	11587	11587		1	9606
DLVLLSEIEVAQANDIISSTEISSAEK	1	0	Unmodified	2873.4757	0.47572869	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10.5	0.5										1	1						26.465	26.465	2	1.3033E-46	24693	DP690-10	232.73	232.73			0.8193	0.99297	NaN	1	0	Median	6288900	3210000	3078900	2386	604	2241	4737;4738	11588;11589;11590;11591;11592;11593;11594	11590		7	9606
DLVPDLSNFYAQYK	1	0	Unmodified	1671.8144	0.81443765	554	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	15	0															1		22.082	22.082	2	0.0029123	17400	DP690-15	85.958	63.425			0.71202	0.80756	NaN	1	0	Median	1697800	1024900	672910	2387	554	2242	4739	11595;11596;11597;11598;11599	11596		5	9606
DLVSSLTSGLLTIGDR	0	1	Unmodified	1645.8887	0.88866522	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	6.5	3.57			2						1		1						25.882	25.882	2	2.9064000000000002E-24	23836	DP690-11	277.15	244.82			0.92064	1.0448	9.3608	2	0	Median	35718000	20056000	15662000	2388	873	2243	4740;4741;4742;4743	11600;11601;11602;11603;11604;11605;11606;11607;11608;11609;11610	11603		11	9606
DLYANTVLSGGTTMYPGIADR	0	1	Unmodified	2214.0627	0.062683196	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	13.8	1.17									1	1	1		1	33	2	1	26.071	26.071	2;3	4.2527E-96	17045	DP690-14	369.51	322.26			0.80086	0.99781	14.052	25	0	Median	11742000000	6549499999.999999	5192100000	2389	926;1023	2244	4744;4745;4746;4747;4748;4749;4750;4751;4752;4753;4754;4755;4756;4757;4758;4759;4760;4761;4762;4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773;4774;4775;4776;4777;4778;4779;4780;4781;4782;4783	11611;11612;11613;11614;11615;11616;11617;11618;11619;11620;11621;11622;11623;11624;11625;11626;11627;11628;11629;11630;11631;11632;11633;11634;11635;11636;11637;11638;11639;11640;11641;11642;11643;11644;11645;11646;11647;11648;11649;11650;11651;11652;11653;11654;11655;11656;11657;11658;11659;11660;11661;11662;11663;11664;11665;11666;11667;11668;11669;11670;11671;11672;11673;11674;11675;11676;11677;11678;11679;11680;11681;11682;11683;11684;11685;11686;11687;11688;11689;11690;11691;11692;11693;11694;11695;11696;11697;11698;11699;11700;11701;11702;11703;11704;11705;11706;11707;11708;11709;11710;11711;11712;11713;11714;11715;11716;11717;11718;11719;11720;11721;11722;11723	11626		113	9606
DLYANTVLSGGTTMYPGIADR	0	1	Oxidation (M)	2230.0576	0.057597819	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	13.5	1.84						1			1		1	1	1	22	2	1	23.726	23.726	2;3	2.877E-41	14334	DP690-9	254.72	232.39			0.86158	1.0517	20.005	17	0	Median	9609000000	5265500000	4343500000	2390	926;1023	2244	4784;4785;4786;4787;4788;4789;4790;4791;4792;4793;4794;4795;4796;4797;4798;4799;4800;4801;4802;4803;4804;4805;4806;4807;4808;4809;4810;4811;4812;4813	11724;11725;11726;11727;11728;11729;11730;11731;11732;11733;11734;11735;11736;11737;11738;11739;11740;11741;11742;11743;11744;11745;11746;11747;11748;11749;11750;11751;11752;11753;11754;11755;11756;11757;11758;11759;11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775;11776;11777;11778;11779;11780;11781;11782;11783;11784;11785;11786;11787;11788;11789;11790;11791;11792;11793;11794;11795;11796;11797;11798;11799;11800;11801;11802;11803;11804;11805;11806;11807;11808;11809	11807	1424	86	9606
DLYDAGVK	1	0	Unmodified	879.4338	0.43379771	404	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	15	0															1		14	14	1	0.061841	7525	DP690-15	107.9	18.6			0.92671	1.093	NaN	1	0	Median	18362000	8316100	10046000	2391	404	2245	4814	11810	11810		0	9606
DLYDAGVKR	1	1	Unmodified	1035.5349	0.53490874	404	P07355	ANXA2	Annexin A2	yes	yes	0	0	1	11.2	3.98						1	1		1					1	1	1	12.021	12.021	2	0.0012903	4664	DP690-14	146.54	101.85			0.88479	0.98005	15.567	6	0	Median	7539099999.999999	4008099999.9999995	3530999999.9999995	2392	404	2246	4815;4816;4817;4818;4819;4820	11811;11812;11813;11814;11815;11816;11817;11818;11819;11820;11821;11822;11823;11824;11825;11826;11827	11813		17	9606
DLYEDELVPLFEK	1	0	Unmodified	1608.7923	0.79230522	176	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	11.3	0.471											2	1					22.991	22.991	2	2.7936E-11	20484	DP690-11	217.02	161.95			0.754	0.90612	NaN	1	0	Median	53693000	30161000	23532000	2393	176	2247	4821;4822;4823	11828;11829;11830;11831;11832;11833;11834;11835;11836;11837;11838;11839	11830		12	9606
DLYLASVFHATAFELDTDGNPFDQDIYGR	0	1	Unmodified	3289.5204	0.52038748	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	13	0													1				25.188	25.188	3	8.1753E-06	21514	DP690-13	108.44	99.553			0.74146	0.847	NaN	1	0	Median	1561500	865680	695820	2394	819	2248	4824	11840;11841	11841		2	9606
DMALNIGNEIDAQNPQIK	1	0	Oxidation (M)	1998.9681	0.96805453	66	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	1	0	15	0															1		17.931	17.931	2	8.4927E-05	12597	DP690-15	124.07	94.064			0.74096	0.86076	NaN	1	0	Median	5410500	3821700	1588700	2395	66	2249	4825	11842	11842	74	1	9606
DMAQLPETEIAPAKDVAPSTVK	2	0	Unmodified	2310.1777	0.17771295	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	10	0										1							16.791	16.791	3	0.048681	12060	DP690-10	68.634	27.121			NaN	NaN	NaN	0	0	Median	70648000	70648000	0	2396	604	2250	4826	11843	11843		1	9606
DMASLPSESNEPK	1	0	Oxidation (M)	1419.6188	0.61877431	2530	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	1	0	3	0			1														12.547	12.547	2	0.017166	5405	DP690-3	96.229	68.748			NaN	NaN	NaN	0	0	Median	2228700	2228700	0	2397	2530	2251	4827	11844;11845	11845	2962	2	9606
DMCLEKDTLGLFLR	1	1	Oxidation (M)	1725.843	0.84297736	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	1	10	0										1							20.687	20.687	3	0.0074218	17688	DP690-10	69.345	56.853			1.0979	1.3412	NaN	1	0	Median	25863000	12778000	13085000	2398	269	2252	4828	11846;11847	11846	271	2	9606
DMEALLPLMNMVIYSIDK	1	0	3 Oxidation (M)	2143.0251	0.025100403	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	3	0	12	0												2					22.044	22.044	2	0.00098267	18380	DP690-12	97.631	55.589			0.84124	1.0213	NaN	1	0	Median	6048200	3007600	3040700	2399	1814	2253	4829;4830	11848;11849;11850;11851	11849	2391;2392;2393	4	9606
DMEALNVLPPDVLTR	0	1	Unmodified	1681.8709	0.87090667	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	7	4			1								1						21.864	21.864	2	0.0033342	19091	DP690-11	123.95	74.95			NaN	NaN	NaN	0	0	Median	9863600	9863600	0	2400	797	2254	4831;4832	11852;11853;11854	11852		3	9606
DMEALNVLPPDVLTR	0	1	Oxidation (M)	1697.8658	0.86582129	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	3.5	0.5			1	1													20.543	20.543	2	2.486E-11	15652	DP690-3	176.99	132.43			0.67386	0.77813	NaN	1	0	Median	12789000	1516700	11273000	2401	797	2254	4833;4834	11855;11856;11857;11858;11859;11860;11861;11862	11855	1205	8	9606
DMEANLLPGFLR	0	1	Oxidation (M)	1390.6915	0.69148574	195	O43913	ORC5	Origin recognition complex subunit 5	yes	yes	0	1	0	13	0													1				21.483	21.483	2	0.00010599	17338	DP690-13	126.31	98.232			0.83813	1.0294	NaN	1	0	Median	27827000	14959000	12867000	2402	195	2255	4835	11863;11864	11864	207	2	9606
DMGFTEEEFKR	1	1	Oxidation (M)	1403.6027	0.60273031	357	P00813	ADA	Adenosine deaminase	yes	yes	0	1	1	6	0						2											13.943	13.943	2;3	0.0091907	6815	DP690-6	119.68	90.723			0.68282	0.76524	NaN	1	0	Median	23084000	12014000	11070000	2403	357	2256	4836;4837	11865;11866;11867	11866	368	3	9606
DMGSVALDAGTAK	1	0	Oxidation (M)	1250.5813	0.58126659	2169	Q9HCN4	GPN1	GPN-loop GTPase 1	yes	yes	0	1	0	6	0						1											12.897	12.897	2	0.03949	5544	DP690-6	86.463	43.38			NaN	NaN	NaN	0	0	Median	1542300	0	1542300	2404	2169	2257	4838	11868	11868	2655	1	9606
DMGYGNWISKPQEEK	2	0	Oxidation (M)	1796.8039	0.80394931	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	1	11	0											2						14.928	14.928	2;3	5.6036E-09	9334	DP690-11	202	178.49			0.73479	0.84005	8.3806	2	0	Median	334710000	201400000	133310000	2405	897	2258	4839;4840	11869;11870;11871;11872;11873	11873	1389	5	9606
DMGYGNWISKPQEEK	2	0	Unmodified	1780.809	0.80903469	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	11	0											2						16.097	16.097	2;3	4.7326E-07	11017	DP690-11	173.59	123.11			0.70601	0.78165	NaN	1	0	Median	322560000	172680000	149890000	2406	897	2258	4841;4842	11874;11875;11876;11877;11878;11879	11878		6	9606
DMIILPEMVGSMVGVYNGK	1	0	3 Oxidation (M)	2099.9941	0.99413463	993	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	3	0	16	0																1	18.925	18.925	2	0.00080808	13437	DP690-16	99.669	86.873			0.91782	1.0695	NaN	1	0	Median	4234500	2442800	1791700	2407	993	2259	4843	11880;11881;11882;11883;11884	11880	1513;1514;1515	5	9606
DMLEAGILDTYLGK	1	0	Oxidation (M)	1553.7647	0.76471026	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	8	4				1								1					21.624	21.624	2	3.635E-05	16512	DP690-4	132.76	85.059			1.1683	1.3433	29.726	2	0	Median	20675000	9931100	10744000	2408	826	2260	4844;4845	11885;11886;11887;11888;11889;11890;11891;11892;11893	11891	1241	9	9606
DMLTQTYDLIER	0	1	Oxidation (M)	1512.713	0.71300904	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	1	0	10	0										1							19.298	19.298	2	0.057174	15700	DP690-10	83.397	46.285			NaN	NaN	NaN	0	0	Median	0	0	0	2409	1158	2261	4846	11894	11894		1	9606
DMLTQTYDLIER	0	1	Unmodified	1496.7181	0.71809442	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										1							22.258	22.258	2	0.014937	19751	DP690-10	103.31	56.905			NaN	NaN	NaN	0	0	Median	0	0	0	2410	1158	2261	4847	11895	11895		1	9606
DMPIQAFLLYQEPVLGPVR	0	1	Oxidation (M)	2201.1555	0.15546137	34	CON__P02666			yes	yes	0	1	0	5.57	3.49	3	4	13	3	3	6	10	4	1					1	2	1	24.599	24.599	2;3	4.7689E-65	15060	DP690-1	278.64	235.84		+	NaN	NaN	NaN	0	0	Median	1050599999.9999999	1050599999.9999999	0	2411	34	2262	4848;4849;4850;4851;4852;4853;4854;4855;4856;4857;4858;4859;4860;4861;4862;4863;4864;4865;4866;4867;4868;4869;4870;4871;4872;4873;4874;4875;4876;4877;4878;4879;4880;4881;4882;4883;4884;4885;4886;4887;4888;4889;4890;4891;4892;4893;4894;4895;4896;4897;4898	11896;11897;11898;11899;11900;11901;11902;11903;11904;11905;11906;11907;11908;11909;11910;11911;11912;11913;11914;11915;11916;11917;11918;11919;11920;11921;11922;11923;11924;11925;11926;11927;11928;11929;11930;11931;11932;11933;11934;11935;11936;11937;11938;11939;11940;11941;11942;11943;11944;11945;11946;11947;11948;11949;11950;11951;11952;11953;11954;11955;11956;11957;11958;11959;11960;11961;11962;11963;11964;11965;11966;11967;11968;11969;11970;11971;11972;11973;11974;11975;11976;11977;11978;11979;11980;11981;11982;11983;11984;11985;11986;11987;11988;11989;11990;11991;11992;11993;11994;11995	11897	34	100	
DMPIQAFLLYQEPVLGPVR	0	1	Unmodified	2185.1605	0.16054675	34	CON__P02666			yes	yes	0	0	0	4.62	3.71		2	3		2									1			24.806	24.806	2	5.0248000000000006E-64	19970	DP690-5	273.07	224.53		+	NaN	NaN	NaN	0	0	Median	22344000	22344000	0	2412	34	2262	4899;4900;4901;4902;4903;4904;4905;4906	11996;11997;11998;11999;12000;12001;12002;12003;12004;12005	12003		10	
DMQPSMESDMALVK	1	0	3 Oxidation (M)	1628.6732	0.67319442	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	3	0	10	0										1							12.87	12.87	2	0.00026632	6325	DP690-10	118.9	107.75			0.73516	0.90887	NaN	1	0	Median	73142000	39233000	33909000	2413	604	2263	4907	12006;12007;12008;12009	12006	829;830;831	4	9606
DMQPSMESDMALVK	1	0	2 Oxidation (M)	1612.6783	0.67827979	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	2	0	10	0										1							14.04	14.04	2	0.001373	8122	DP690-10	101.39	93.849			0.67274	0.83002	NaN	1	0	Median	88446000	45154000	43292000	2414	604	2263	4908	12010;12011;12012	12012	829;830;831	3	9606
DMQPSMESDMALVK	1	0	Oxidation (M)	1596.6834	0.68336517	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	0	10	0										2							16.756	16.756	2	0.0021432	13040	DP690-10	96.756	71.37			0.73145	0.89962	15.042	2	0	Median	91431000	45607000	45824000	2415	604	2263	4909;4910	12013;12014;12015;12016;12017;12018	12017	829;830;831	6	9606
DMQPSMESDMALVK	1	0	Unmodified	1580.6885	0.68845055	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10	0										1							18.283	18.283	2	0.054537	14251	DP690-10	88.338	44.135			NaN	NaN	NaN	0	0	Median	0	0	0	2416	604	2263	4911	12019	12019		1	9606
DMSGHYQNALYLGDVSER	0	1	Oxidation (M)	2069.9113	0.91126793	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	1	0	3	0			1														16.364	16.364	3	0.0010432	10493	DP690-3	78.794	59.502			1.95	2.2485	NaN	1	0	Median	18721000	6185800	12535000	2417	878	2264	4912	12020;12021;12022	12020	1333	3	9606
DMSGHYQNALYLGDVSER	0	1	Unmodified	2053.9164	0.91635331	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														17.199	17.199	3	0.019799	11576	DP690-3	77.969	44.616			NaN	NaN	NaN	0	0	Median	4982400	0	4982400	2418	878	2264	4913	12023	12023		1	9606
DMSISNTTMDEFR	0	1	2 Oxidation (M)	1577.6338	0.63377244	1229	Q13618	CUL3	Cullin-3	yes	yes	0	2	0	3	0			1														14.828	14.828	2	0.013098	8418	DP690-3	93.561	65.789			NaN	NaN	NaN	0	0	Median	5129700	5129700	0	2419	1229	2265	4914	12024;12025	12024	1885;1886	2	9606
DMTAQFNNLGVLHVTK	1	0	Oxidation (M)	1802.8985	0.8985184	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	1	0	3	0			1														17.095	17.095	3	0.03754	11440	DP690-3	71.143	44.114			NaN	NaN	NaN	0	0	Median	11193000	0	11193000	2420	1076	2266	4915	12026	12026	1683	1	9606
DMTLPPETNVILTK	1	0	Oxidation (M)	1586.8226	0.82255949	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	0	10	0										1							17.69	17.69	2	0.0024238	13451	DP690-10	94.402	52.064			0.72503	0.82913	NaN	1	0	Median	414480000	237080000	177400000	2421	604	2267	4916	12027;12028	12027	832	2	9606
DMVGIAQTGSGK	1	0	Oxidation (M)	1178.5601	0.56013721	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	1	0	11	0											1						11.386	11.386	2	0.00049558	4130	DP690-11	154.84	130.01			0.823	0.91283	NaN	1	0	Median	265900000	143580000	122320000	2422	1793	2268	4917	12029;12030;12031;12032	12032	2359	4	9606
DMVGIAQTGSGK	1	0	Unmodified	1162.5652	0.56522259	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11.7	0.471											1	2					13.972	13.972	2	0.00029887	7927	DP690-11	161.17	111.75			0.83641	0.91439	NaN	1	0	Median	320690000	162210000	158480000	2423	1793	2268	4918;4919;4920	12033;12034;12035;12036	12034		4	9606
DMYEQFQNIMK	1	0	2 Oxidation (M)	1477.6218	0.62175119	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	2	0	13	0													1				15.423	15.423	2	0.0021069	9380	DP690-13	102.61	87.636			1.188	1.3819	NaN	1	0	Median	30042000	14242000	15800000	2424	934	2269	4921	12037;12038	12038	1446;1447	2	9606
DNAAVDGISLHLQDICPLLYSTDDAICSK	1	0	Unmodified	3203.5115	0.51147905	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10	0										1							23.272	23.272	3	6.0119E-06	21026	DP690-10	110.46	99.355			0.92661	1.1332	NaN	1	0	Median	27341000	15111000	12230000	2425	272	2270	4922	12039;12040	12040		2	9606
DNFFEVFTPVFER	0	1	Unmodified	1645.7777	0.77765821	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	5.67	3.77			2								1						24.637	24.637	2	1.1776E-45	22405	DP690-11	255.52	201.92			NaN	NaN	NaN	0	0	Median	20402000	0	20402000	2426	1941	2271	4923;4924;4925	12041;12042;12043;12044;12045	12041		5	9606
DNFTAIPEGTNGVEER	0	1	Unmodified	1747.8013	0.80130678	1260	Q14195	DPYSL3	Dihydropyrimidinase-related protein 3	yes	yes	0	0	0	4	0				1													16.346	16.346	2	3.5694E-07	10278	DP690-4	193.15	148.29			0.76892	0.89601	NaN	1	0	Median	12252000	6971500	5280100	2427	1260	2272	4926	12046;12047;12048;12049	12047		4	9606
DNFTLIPEGTNGTEER	0	1	Unmodified	1791.8275	0.82752153	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	8	4				1								1					18.188	18.188	2	2.6108E-07	13434	DP690-12	166.45	117.45			NaN	NaN	NaN	0	0	Median	16728000	0	16728000	2428	1359	2273	4927;4928	12050;12051;12052;12053;12054	12051		5	9606
DNFTLIPEGVNGIEER	0	1	Unmodified	1801.8846	0.88464248	1259	Q14194	CRMP1	Dihydropyrimidinase-related protein 1	yes	yes	0	0	0	4	0				1													20.42	20.42	2	0.0025271	15174	DP690-4	102.97	74.165			1.7597	2.033	NaN	1	0	Median	3287500	1197900	2089600	2429	1259	2274	4929	12055	12055		1	9606
DNGDGTHTVHYTPATDGPYTVAVK	1	0	Unmodified	2515.1615	0.16154562	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	6.6	3.77		2							1	2							14.431	14.431	3;4	7.1729E-05	7018	DP690-2	118.37	79.99			0.89424	1.1045	12.545	3	0	Plateau	259160000	179890000	79272000	2430	1270	2275	4930;4931;4932;4933;4934	12056;12057;12058;12059;12060;12061;12062;12063;12064;12065;12066;12067	12062		12	9606
DNGIRPSSLEQMAK	1	1	Oxidation (M)	1560.7566	0.75660519	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	1	1	13	0													1				12.726	12.726	2	0.023024	5573	DP690-13	83.226	54.428			0.70957	0.85984	NaN	1	0	Median	11084000	6766900	4317100	2431	894	2276	4935	12068;12069	12068	1369	2	9606
DNGNGTYSCSYVPR	0	1	Unmodified	1588.6576	0.65761943	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.5	0.5									1	1							14.276	14.276	2	1.0762E-06	8439	DP690-10	192.44	146.53			0.80503	0.98938	0.27186	2	0	Median	197620000	105060000	92558000	2432	549	2277	4936;4937	12070;12071;12072;12073;12074;12075	12072		6	9606
DNHLLGTFDLTGIPPAPR	0	1	Unmodified	1933.0058	0.005760665	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	6.8	3.87			1	2							1	1					20.146	20.146	2;3	1.0747E-13	14826	DP690-4	189.44	172.45			1.1583	1.2852	24.572	3	0	Median	97843000	65138000	32705000	2433	462	2278	4938;4939;4940;4941;4942	12076;12077;12078;12079;12080;12081;12082;12083;12084;12085;12086;12087;12088	12084		13	9606
DNILPELGVR	0	1	Unmodified	1124.619	0.61897272	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														19.117	19.117	2	0.00018734	13954	DP690-3	129.42	100.5			0.72986	0.80909	NaN	1	0	Median	42876000	24347000	18529000	2434	797	2279	4943	12089;12090;12091;12092	12092		4	9606
DNIQGITKPAIR	1	1	Unmodified	1324.7463	0.7462985	990	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	13.7	3.61								2								5	13.508	13.508	2;3	4.5975E-11	6732	DP690-16	190.57	141.78			0.83175	0.89946	3.0978	5	0	Median	8026899999.999999	4118999999.9999995	3907899999.9999995	2435	990	2280	4944;4945;4946;4947;4948;4949;4950	12093;12094;12095;12096;12097;12098;12099;12100;12101;12102;12103;12104;12105;12106;12107;12108;12109;12110;12111;12112;12113;12114	12103		22	9606
DNIQGITKPAIRR	1	2	Unmodified	1480.8474	0.84740953	990	P62805	HIST1H4A	Histone H4	yes	yes	0	0	2	16	0																1	11.876	11.876	3	0.0018102	4430	DP690-16	88.338	75.918			0.95195	0.95489	NaN	1	0	Median	153160000	79887000	73276000	2436	990	2281	4951	12115;12116;12117;12118	12117		4	9606
DNITNNTAAATVR	0	1	Unmodified	1359.6743	0.67425577	1542	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	2	0		1															12.812	12.812	2	3.6284E-05	5143	DP690-2	126.71	84.369			1.2613	1.2904	NaN	1	0	Median	2118100	836660	1281500	2437	1542	2282	4952	12119;12120;12121;12122	12120		4	9606
DNLAEDIMR	0	1	Oxidation (M)	1091.4917	0.4917233	424	P08670	VIM	Vimentin	yes	yes	0	1	0	12.7	0.471												1	2				15.028	15.028	2	0.0087892	8821	DP690-13	98.582	47.389			0.8062	0.90837	5.0923	3	0	Plateau	630490000	340770000	289730000	2438	424	2283	4953;4954;4955	12123;12124;12125;12126;12127;12128;12129;12130;12131	12127	480	9	9606
DNLAEDIMR	0	1	Unmodified	1075.4968	0.49680868	424	P08670	VIM	Vimentin	yes	yes	0	0	0	12.5	0.5												1	1				18.53	18.53	2	0.00025218	13568	DP690-13	162.25	112.13			0.83652	0.97348	1.0712	2	0	Median	266520000	142110000	124420000	2439	424	2283	4956;4957	12132;12133;12134;12135;12136;12137;12138;12139	12137		8	9606
DNLAEELEGVAGR	0	1	Unmodified	1371.663	0.66302238	781	P48681	NES	Nestin	yes	yes	0	0	0	10.5	0.5										1	1						20.334	20.334	2	6.4239E-10	17145	DP690-10	257.72	200.8			0.79524	0.94722	6.3097	2	0	Median	260480000	142320000	118160000	2440	781	2284	4958;4959	12140;12141;12142;12143;12144;12145;12146;12147;12148	12141		9	9606
DNLEFFLAGIGR	0	1	Unmodified	1350.6932	0.6932003	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														23.211	23.211	2	4.2268E-05	16786	DP690-2	183.72	135.3			0.90385	0.98212	7.2639	2	0	Median	41416000	22232000	19185000	2441	789	2285	4960;4961	12149;12150;12151;12152;12153;12154;12155;12156	12152		8	9606
DNLPLQENVTIQK	1	0	Unmodified	1510.7991	0.79912193	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11	0											1						16.504	16.504	2	2.2591E-08	11690	DP690-11	205.52	168.46			0.92586	1.0139	NaN	1	0	Median	313900000	176140000	137760000	2442	1950	2286	4962	12157;12158;12159;12160;12161	12161		5	9606
DNNLELVQEILR	0	1	Unmodified	1454.7729	0.77290718	1256	Q14168	MPP2	MAGUK p55 subfamily member 2	yes	yes	0	0	0	12	0												1					22.777	22.777	2	4.0318E-07	19226	DP690-12	169.58	90.088			NaN	NaN	NaN	0	0	Median	4123000	4123000	0	2443	1256	2287	4963	12162	12162		1	9606
DNNQFASASLDR	0	1	Unmodified	1336.6008	0.60075648	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	7	4			1								1						14.626	14.626	2	0.00021418	8165	DP690-3	167.09	154.03			2.095	2.3321	NaN	1	0	Median	39603000	15085000	24518000	2444	670	2288	4964;4965	12163;12164;12165;12166;12167	12167		5	9606
DNPGVVTCLDEAR	0	1	Unmodified	1444.6616	0.66164217	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														15.936	15.936	2	0.00015529	9872	DP690-3	192.44	166.82			0.90297	1.0065	NaN	1	0	Median	38628000	20790000	17838000	2445	561	2289	4966	12168;12169	12168		2	9606
DNQNFCVPCYEK	1	0	Unmodified	1572.6337	0.63371286	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	11.7	4.03						1								1	1		15.913	15.913	2	2.3855E-05	10095	DP690-14	189.17	163.93			0.96579	1.1228	9.036	3	0	Median	386810000	195630000	191180000	2446	1258	2290	4967;4968;4969	12170;12171;12172;12173;12174;12175;12176;12177;12178	12173		9	9606
DNSTMGYMMAK	1	0	2 Oxidation (M)	1279.4883	0.48829418	416	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	2	0	3	0			1														11.42	11.42	2	0.054795	3871	DP690-3	66.19	60.988			0.95616	1.015	NaN	1	0	Median	31268000	15320000	15948000	2447	416	2291	4970	12179	12179		1	9606
DNSVFHVSNLEFPFR	0	1	Unmodified	1806.8689	0.86893283	232	O60942	RNGTT	mRNA-capping enzyme;Polynucleotide 5'-triphosphatase;mRNA guanylyltransferase	yes	yes	0	0	0	12	0												1					21.131	21.131	2	0.0012189	17191	DP690-12	93.839	60.61			0.88187	1.0802	NaN	1	0	Median	4332500	2431300	1901100	2448	232	2292	4971	12180	12180		1	9606
DNSVFHVSNLEFPFRK	1	1	Unmodified	1934.9639	0.96389585	232	O60942	RNGTT	mRNA-capping enzyme;Polynucleotide 5'-triphosphatase;mRNA guanylyltransferase	yes	yes	0	0	1	12	0												1					18.947	18.947	3	0.0010211	14452	DP690-12	66.809	49.885			1.7139	2.2187	NaN	1	0	Median	26966000	9839300	17127000	2449	232	2293	4972	12181	12181		1	9606
DNTDLMKELDDRK	2	1	Oxidation (M)	1607.7461	0.74610008	2547				yes	yes	0	1	2	14	0														1			17.968	17.968	2	0.011599	12867	DP690-14	68.657	7.0636	+		0.14764	0.1777	NaN	1	0	Median	65660000	56662000	8997500	2450	2547	2294	4973	12182	12182	2975	1	9606
DNTNEIYSGK	1	0	Unmodified	1139.5095	0.50948185	387	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	3	0			1														12.118	12.118	2	0.0064139	4775	DP690-3	88.681	59.207			1.5102	1.6029	NaN	1	0	Median	11116000	4394600	6721000	2451	387	2295	4974	12183;12184	12183		2	9606
DNTRPGANSPEMWSEAIK	1	1	Unmodified	2001.9214	0.92143869	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	1	11	0											1						16.353	16.353	3	0.00098164	11448	DP690-11	79.332	63.026			0.67905	0.77815	NaN	1	0	Median	133220000	73066000	60157000	2452	1768	2296	4975	12185;12186;12187	12185		3	9606
DNTSVYHISGK	1	0	Unmodified	1219.5833	0.5833155	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	3	0			1														11.812	11.812	2	0.010807	4375	DP690-3	76.927	32.61			1.0022	1.0534	NaN	1	0	Median	7130800	3516300	3614500	2453	2215	2297	4976	12188;12189	12188		2	9606
DNTYLVELSSLLVR	0	1	Unmodified	1620.8723	0.87228688	1883	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	0	12	0												3					25.236	25.236	2	3.5735E-07	21777	DP690-12	168.98	120.24			0.98537	1.1873	NaN	1	0	Median	2364700	832390	1532300	2454	1883	2298	4977;4978;4979	12190;12191;12192	12191		3	9606
DNVSSPGGATIHALHVLESGGFR	0	1	Unmodified	2320.156	0.15600673	645	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	14	0														1			19.587	19.587	3	0.0016176	15146	DP690-14	67.413	52.995			1.0495	1.2724	NaN	1	0	Median	35719000	19686000	16033000	2455	645	2299	4980	12193	12193		1	9606
DNYVPEVSALDQEIIEVDPDTK	1	0	Unmodified	2488.1857	0.18569468	425	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	12	4								1								1	22.71	22.71	2	3.6354E-06	17813	DP690-16	131.61	119.29			0.88725	1.0067	19.737	2	0	Median	6726600	3760000	2966600	2456	425	2300	4981;4982	12194;12195;12196;12197;12198;12199;12200;12201;12202;12203;12204	12198		11	9606
DNYVPEVSALDQEIIEVDPDTKEMLK	2	0	Oxidation (M)	3005.4427	0.44271401	425	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	1	1	12	4								1								1	21.488	21.488	3	0.00067443	16308	DP690-16	67.31	54.862			0.75706	0.86842	9.8049	2	0	Median	84012000	47173000	36839000	2457	425	2301	4983;4984	12205;12206;12207;12208;12209;12210;12211;12212;12213	12208	489	9	9606
DPAEALQLPMDYVQR	0	1	Oxidation (M)	1760.8403	0.84033482	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	0	8	4				1								1					18.867	18.867	2	6.1757E-12	14307	DP690-12	189.24	139.78			0.65083	0.75777	NaN	1	0	Median	39785000	6241200	33544000	2458	2434	2302	4985;4986	12214;12215;12216;12217;12218	12214	2872	5	9606
DPAEALQLPMDYVQR	0	1	Unmodified	1744.8454	0.8454202	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	12	0												1					20.776	20.776	2	1.4129E-25	16835	DP690-12	219.43	141.84			NaN	NaN	NaN	0	0	Median	11883000	0	11883000	2459	2434	2302	4987	12219;12220	12219		2	9606
DPDSNPYSLLDNTESDQTADTDASESHHSTNR	0	1	Unmodified	3518.4578	0.45779981	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	11.5	0.5											1	1					16.087	16.087	4	1.2382E-29	10546	DP690-12	187.45	185.64			0.75754	0.90249	5.1158	2	0	Median	106440000	63170000	43274000	2460	829	2303	4988;4989	12221;12222;12223;12224;12225;12226	12225		6	9606
DPEAGDVEADPGLADLPQQLLFVHQGETELK	1	0	Unmodified	3330.6256	0.62558083	1972	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	13	0													1				22.269	22.269	3	3.3079E-09	18256	DP690-13	117.83	79.458			NaN	NaN	NaN	0	0	Median	2196700	2196700	0	2461	1972	2304	4990	12227;12228;12229	12228		3	9606
DPEEIEKEEQAAAEK	2	0	Unmodified	1714.7897	0.78973904	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	1	14	0														1			14.081	14.081	2	1.0974E-90	7552	DP690-14	403.8	303.11			1.6471	1.844	NaN	1	0	Median	70446000	28399000	42047000	2462	428	2305	4991	12230;12231;12232;12233	12231		4	9606
DPEFVFYDQLK	1	0	Unmodified	1399.666	0.66598249	1812	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	12	0												1					20.563	20.563	2	0.0029254	16645	DP690-12	130.66	55.443			NaN	NaN	NaN	0	0	Median	7078800	7078800	0	2463	1812	2306	4992	12234	12234		1	9606
DPEPEQAGPSSGVTNR	0	1	Unmodified	1639.7438	0.7437919	841	P51784	USP11	Ubiquitin carboxyl-terminal hydrolase 11	yes	yes	0	0	0	3	0			1														11.817	11.817	2	3.3166E-06	4434	DP690-3	138.2	105.21			1.3296	1.4701	NaN	1	0	Median	4916600	1988000	2928600	2464	841	2307	4993	12235;12236;12237;12238;12239	12238		5	9606
DPESETDNDSQEIFK	1	0	Unmodified	1752.7326	0.73261809	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								16.063	16.063	2	4.1084000000000003E-20	9847	DP690-9	293.71	284.06			0.70924	0.9066	NaN	1	0	Median	11519000	6232000	5287200	2465	1046	2308	4994	12240;12241;12242;12243	12240		4	9606
DPESNINSDNEK	1	0	Unmodified	1360.5743	0.57426695	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	11	0											2						10.708	10.708	2	0.0029749	3109	DP690-11	121.61	76.585			NaN	NaN	NaN	0	0	Median	0	0	0	2466	2105	2309	4995;4996	12244;12245	12244		2	9606
DPETLVGYSMVGCQR	0	1	Oxidation (M)	1726.7655	0.76545532	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	2.5	0.5		1	1														16.832	16.832	2	7.4595E-06	9876	DP690-2	176.8	128.36			0.83583	0.90538	7.6183	2	0	Median	30023000	16397000	13626000	2467	789	2310	4997;4998	12246;12247;12248;12249;12250;12251;12252	12249	1177	7	9606
DPETLVGYSMVGCQR	0	1	Unmodified	1710.7705	0.7705407	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															18.523	18.523	2	1.243E-07	11893	DP690-2	173.04	123.74			NaN	NaN	NaN	0	0	Median	2193400	0	2193400	2468	789	2310	4999	12253;12254	12254		2	9606
DPGGITAGSTDEPPMLTK	1	0	Oxidation (M)	1801.8404	0.8403944	1742	Q8WUZ0	BCL7C	B-cell CLL/lymphoma 7 protein family member C	yes	yes	0	1	0	14	0														2			15.401	15.401	2	2.0403999999999998E-19	9526	DP690-14	195.71	153.08			NaN	NaN	NaN	0	0	Median	8344300	8344300	0	2469	1742	2311	5000;5001	12255;12256;12257	12256	2320	3	9606
DPGGITAGSTDEPPMLTK	1	0	Unmodified	1785.8455	0.84547978	1742	Q8WUZ0	BCL7C	B-cell CLL/lymphoma 7 protein family member C	yes	yes	0	0	0	14	0														1			16.835	16.835	2	0.0025251	11488	DP690-14	111.66	71.783			NaN	NaN	NaN	0	0	Median	23599000	23599000	0	2470	1742	2311	5002	12258	12258		1	9606
DPIPYLPPLEK	1	0	Unmodified	1280.7016	0.70163972	422	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	12	0												1					19.806	19.806	2	0.006173	15714	DP690-12	96.665	59.157			0.62386	0.74336	NaN	1	0	Median	47440000	29927000	17513000	2471	422	2312	5003	12259;12260;12261;12262	12262		4	9606
DPLLLAIIPK	1	0	Unmodified	1091.6954	0.69543213	2158	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	5	3.46			3								1						22.698	22.698	2	9.5153E-05	20161	DP690-11	146.58	146.58			0.92567	1.0487	14.138	2	0	Median	12229000	5470100	6758700	2472	2158	2313	5004;5005;5006;5007	12263;12264;12265;12266;12267;12268;12269	12263		7	9606
DPNLFPFEK	1	0	Unmodified	1105.5444	0.5444108	2186	Q9NQ50	MRPL40	39S ribosomal protein L40, mitochondrial	yes	yes	0	0	0	15	0															1		19.818	19.818	2	0.031526	15021	DP690-15	73.233	45.93			0.66178	0.77103	NaN	1	0	Median	6105700	3589700	2516000	2473	2186	2314	5008	12270	12270		1	9606
DPNNLFMVR	0	1	Unmodified	1104.5386	0.53861391	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	3	0			1														18.346	18.346	2	0.00080839	13050	DP690-3	132.08	87.637			1.2513	1.4184	NaN	1	0	Median	10616000	5240100	5375900	2474	1190	2315	5009	12271	12271		1	9606
DPNNLFMVR	0	1	Oxidation (M)	1120.5335	0.53352853	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	1	0	3	0			1														17.195	17.195	2	0.056618	11623	DP690-3	84.568	31.631			NaN	NaN	NaN	0	0	Median	15716000	0	15716000	2475	1190	2315	5010	12272	12272		1	9606
DPNTYFIVGTAMVYPEEAEPK	1	0	Unmodified	2370.109	0.10896469	1355	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	11	0											1						22.246	22.246	2	0.053429	19566	DP690-11	82.259	58.862			NaN	NaN	NaN	0	0	Median	0	0	0	2476	1355	2316	5011	12273	12273		1	9606
DPPDPYVSLLLLPDK	1	0	Unmodified	1680.8974	0.89743899	1993	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	3	0			1														23.288	23.288	2	0.028806	18932	DP690-3	62.088	62.088			0.90821	0.9433	NaN	1	0	Median	1602500	928570	673890	2477	1993	2317	5012	12274;12275	12275		2	9606
DPPEEEIPFCTLK	1	0	Unmodified	1573.7334	0.73341013	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														19.115	19.115	2	0.0237	14138	DP690-3	94.465	35.398			NaN	NaN	NaN	0	0	Median	4057000	4057000	0	2478	5	2318	5013	12276;12277	12277		2	9606
DPPLAAVTTAVQELLR	0	1	Unmodified	1692.941	0.94103514	1335	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	10	0										1							26.844	26.844	2	6.3811E-07	25086	DP690-10	148.96	148.96			0.68098	0.82745	NaN	1	0	Median	4115200	2297800	1817400	2479	1335	2319	5014	12278;12279;12280;12281	12280		4	9606
DPQALSEHLK	1	0	Unmodified	1136.5826	0.58258722	642	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	4	0				1													12.306	12.306	2	0.031868	5017	DP690-4	92.051	53.891			NaN	NaN	NaN	0	0	Median	4926700	4926700	0	2480	642	2320	5015	12282	12282		1	9606
DPQALSEHLKNPVIAQK	2	0	Unmodified	1887.0214	0.021410729	642	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	1	4	0				1													14.205	14.205	3	0.00691	7488	DP690-4	64.588	48.45			1.0203	1.0513	NaN	1	0	Median	9174300	4579300	4594900	2481	642	2321	5016	12283;12284	12283		2	9606
DPQGLGLHFYK	1	0	Unmodified	1273.6455	0.64552182	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10	0										2							16.362	16.362	2;3	7.6932E-05	11512	DP690-10	131.52	47.019			0.80949	0.99661	NaN	1	0	Median	155970000	84108000	71859000	2482	272	2322	5017;5018	12285;12286;12287;12288	12286		4	9606
DPSASPGDAGEQAIR	0	1	Unmodified	1469.6746	0.6746497	526	P18206	VCL	Vinculin	yes	yes	0	0	0	3	0			1														12.968	12.968	2	0.014865	5923	DP690-3	111.63	49.865			NaN	NaN	NaN	0	0	Median	0	0	0	2483	526	2323	5019	12289	12289		1	9606
DPSQELEFIADILNQDAK	1	0	Unmodified	2044.9953	0.99531514	790	P49354	FNTA	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	yes	yes	0	0	0	5	0					1												26.75	26.75	2	4.1829E-11	22296	DP690-5	168.67	153.57			1.184	1.1902	NaN	1	0	Median	3233100	1345400	1887700	2484	790	2324	5020	12290;12291;12292;12293	12293		4	9606
DPSQIDNNEPYMK	1	0	Oxidation (M)	1565.6668	0.66678713	1199	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	1	0	14	0														1			12.826	12.826	2	0.002948	5863	DP690-14	121.9	88.67			NaN	NaN	NaN	0	0	Median	0	0	0	2485	1199	2325	5021	12294	12294	1849	1	9606
DPSQQELPR	0	1	Unmodified	1068.52	0.51998696	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.33	0.745	1	2	3														12.255	12.255	1;2	0.00025884	4919	DP690-3	134.48	91.564			0.71556	0.73654	24.25	4	0	Median	191130000	111860000	79262000	2486	789	2326	5022;5023;5024;5025;5026;5027	12295;12296;12297;12298;12299;12300;12301;12302;12303;12304;12305;12306;12307	12303		13	9606
DPSTSVPASGAHQPPQTTEGEK	1	0	Unmodified	2220.0295	0.029468813	2414	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	yes	yes	0	0	0	3	0			1														11.187	11.187	3	0.070998	3671	DP690-3	57.798	19.949			NaN	NaN	NaN	0	0	Median	0	0	0	2487	2414	2327	5028	12308	12308		1	9606
DPTPSFYDLWAQEDPNAVLGR	0	1	Unmodified	2390.1179	0.11788989	1247	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	11	0											1						23.676	23.676	2	1.5726E-06	21378	DP690-11	137.73	120.15			0.68923	0.85492	NaN	1	0	Median	8198300	4599800	3598500	2488	1247	2328	5029	12309;12310;12311	12309		3	9606
DPTVHDDVLELEMDELNR	0	1	Oxidation (M)	2154.9739	0.97392777	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									1	1							19.364	19.364	3	2.4095E-11	14040	DP690-9	164.63	147.61			0.64778	0.79882	11.811	2	0	Median	81219000	49090000	32129000	2489	1046	2329	5030;5031	12312;12313;12314;12315;12316	12313	1591	5	9606
DPTVHDDVLELEMDELNR	0	1	Unmodified	2138.979	0.97901315	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								20.438	20.438	3	1.5571E-06	15358	DP690-9	128.45	114.1			0.69398	0.86613	NaN	1	0	Median	15456000	8726200	6729600	2490	1046	2329	5032	12317;12318;12319	12317		3	9606
DPTVHDDVLELEMDELNRHECMAPLTALVK	1	1	2 Oxidation (M)	3521.6477	0.64765495	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	1	9	0									1								19.502	19.502	4	3.2955E-06	14242	DP690-9	109.03	95.625			0.67532	0.78324	NaN	1	0	Median	58563000	29858000	28705000	2491	1046	2330	5033	12320;12321;12322;12323	12321	1591;1592	4	9606
DPTVHDDVLELEMDELNRHECMAPLTALVK	1	1	Oxidation (M)	3505.6527	0.65274033	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	9	0									1								20.337	20.337	4	3.0734E-06	15308	DP690-9	112.42	95.134			0.72433	0.84009	NaN	1	0	Median	43053000	22069000	20984000	2492	1046	2330	5034	12324;12325;12326;12327	12327	1591;1592	4	9606
DPTVHDDVLELEMDELNRHECMAPLTALVK	1	1	Unmodified	3489.6578	0.65782571	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								21.205	21.205	4	5.8409E-06	16319	DP690-9	105.17	94.753			0.70947	0.82285	NaN	1	0	Median	12526000	7554600	4971000	2493	1046	2330	5035	12328;12329;12330	12328		3	9606
DPVLAPAVGADLLDYCLAR	0	1	Unmodified	2028.035	0.035011883	199	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	10	0										2							23.189	23.189	2	9.1353E-05	20851	DP690-10	119.87	101.66			0.90917	1.1444	NaN	1	0	Median	12481000	8191800	4289300	2494	199	2331	5036;5037	12331;12332	12331		2	9606
DPVQLNLLYVQAR	0	1	Unmodified	1527.8409	0.84092717	2482	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	yes	no	0	0	0	2	0		1															20.382	20.382	2	0.0053873	14003	DP690-2	114.5	58.137			NaN	NaN	NaN	0	0	Median	518220	518220	0	2495	2482	2332	5038	12333	12333		1	9606
DPYSGSTISLFQAMQK	1	0	Oxidation (M)	1787.84	0.84000047	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9.5	0.5									1	1							18.84	18.84	2	3.5132E-12	13373	DP690-9	206.36	183.14			0.60641	0.72439	6.1508	2	0	Median	256090000	165040000	91050000	2496	1319	2333	5039;5040	12334;12335;12336;12337;12338	12336	2014	5	9606
DPYSGSTISLFQAMQK	1	0	Unmodified	1771.8451	0.84508585	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.1	0.7									1	8		1					21.102	21.102	2	1.3581E-73	18251	DP690-10	317.4	250.06			0.93457	1.1568	15.803	3	0	Plateau	126930000	58152000	68782000	2497	1319	2333	5041;5042;5043;5044;5045;5046;5047;5048;5049;5050	12339;12340;12341;12342;12343;12344;12345;12346;12347;12348;12349	12340		11	9606
DPYTEQTISLFQAMK	1	0	Oxidation (M)	1786.8448	0.8447515	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	10	0										1							19.791	19.791	2	3.0627E-05	16521	DP690-10	137.4	137.4			0.89825	1.1095	NaN	1	0	Median	79241000	44797000	34444000	2498	1319	2334	5051	12350;12351	12350	2015	2	9606
DPYTEQTISLFQAMK	1	0	Unmodified	1770.8498	0.84983687	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.3	0.471										2	1						22.215	22.215	2	5.8765E-15	19653	DP690-10	221.8	159.34			1.3326	1.6358	61.403	2	0	Median	48428000	24779000	23649000	2499	1319	2334	5052;5053;5054	12352;12353;12354	12353		3	9606
DPYTEQTISLFQAMKK	2	0	Oxidation (M)	1914.9397	0.93971451	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	9	0									1								17.778	17.778	3	0.0003077	12089	DP690-9	91.845	91.845			0.66969	0.81065	NaN	1	0	Median	8075600	4380300	3695200	2500	1319	2335	5055	12355	12355	2015	1	9606
DPYTGQQISLFQAMQK	1	0	Unmodified	1853.8982	0.89818405	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							20.279	20.279	2	8.174399999999999E-26	17063	DP690-10	216.83	174.35			NaN	NaN	NaN	0	0	Median	19726000	3851300	15875000	2501	1319	2336	5056;5057	12356;12357	12356		2	9606
DPYTGQQISLFQAMQK	1	0	Oxidation (M)	1869.8931	0.89309867	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9	0									1								18.227	18.227	2	5.2216E-22	12659	DP690-9	232.78	218.62			0.61121	0.76373	NaN	1	0	Median	21946000	11191000	10755000	2502	1319	2336	5058	12358;12359;12360;12361	12358	2013	4	9606
DPYTGQSVSLFQALK	1	0	Unmodified	1652.841	0.84098675	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.3	1.25									1	1		1					20.844	20.844	2	7.957E-16	17804	DP690-10	232.56	183.57			0.72765	0.89279	11.672	3	0	Plateau	219920000	119580000	100340000	2503	1319	2337	5059;5060;5061	12362;12363;12364;12365;12366;12367;12368;12369;12370;12371;12372;12373	12362		12	9606
DPYTGQSVSLFQALKK	2	0	Unmodified	1780.9359	0.93594977	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.75	0.829									2	1	1						18.39	18.39	2;3	2.4129E-08	12881	DP690-9	176.19	142.89			0.87244	0.99296	29.44	4	0	Median	428690000	243100000	185600000	2504	1319	2338	5062;5063;5064;5065	12374;12375;12376;12377;12378;12379;12380;12381;12382;12383	12379		10	9606
DQAVENILVSPVVVASSLGLVSLGGK	1	0	Unmodified	2550.4269	0.42686843	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	8.2	3.92					3								2				27.412	27.412	2;3	1.652E-10	23255	DP690-5	193.19	193.19			0.8517	0.87603	7.155	5	0	Median	33089000	17740000	15349000	2505	819	2339	5066;5067;5068;5069;5070	12384;12385;12386;12387;12388;12389;12390;12391;12392;12393;12394;12395;12396;12397;12398	12398		15	9606
DQAVMISGESGAGK	1	0	Oxidation (M)	1364.6242	0.62419403	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	1	0	3	0			1														12.045	12.045	2	0.054671	4664	DP690-3	63.091	51.455			0.73585	0.77081	NaN	1	0	Median	4013600	2257500	1756100	2506	65	2340	5071	12399;12400;12401	12399		3	9606
DQDLEPGAPSMGAK	1	0	Oxidation (M)	1430.6348	0.63475872	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	1	0	7	3.56		1							1	1							12.196	12.196	2	0.00018381	4368	DP690-2	122.18	82.12			0.88819	0.89591	NaN	1	0	Median	42762000	35932000	6829800	2507	408	2341	5072;5073;5074	12402;12403;12404;12405;12406;12407	12406	446	6	9606
DQEALEAVKR	1	1	Unmodified	1157.6041	0.60405094	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	1	3	0			1														11.365	11.365	2	0.038975	3952	DP690-3	74.92	26.126			1.0882	1.2069	NaN	1	0	Median	5620300	2749800	2870500	2508	317	2342	5075	12408	12408		1	9606
DQEPIPQNIDR	0	1	Unmodified	1323.6419	0.64189301	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								14.217	14.217	2	0.020572	7525	DP690-9	72.434	34.348			0.87377	1.0909	NaN	1	0	Median	14042000	7650300	6391300	2509	2411	2343	5076	12409;12410	12410		2	9606
DQFGFINYEVGDSK	1	0	Unmodified	1617.7311	0.73110195	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	11	0											1						20.116	20.116	2	0.011135	16780	DP690-11	103.44	70.211			NaN	NaN	NaN	0	0	Median	7835800	7835800	0	2510	264	2344	5077	12411	12411		1	9606
DQFLDTLQAHGHDVNSFVR	0	1	Unmodified	2198.0505	0.050479026	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	3	0			1														17.983	17.983	3	7.8451E-05	12592	DP690-3	109.28	88.084			1.039	1.1827	NaN	1	0	Median	12120000	5981900	6138300	2511	1311	2345	5078	12412	12412		1	9606
DQGGFGDRNEYGSR	0	2	Unmodified	1556.6604	0.66039662	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	1	7	4			1								1						11.714	11.714	3	0.00011937	4628	DP690-11	112.08	112.08			1.2896	1.4562	59.458	2	0	Median	153040000	54161000	98884000	2512	1798	2346	5079;5080	12413;12414;12415;12416	12413		4	9606
DQGTYEDYVEGLR	0	1	Unmodified	1543.6791	0.67906638	925	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	0	16	0																1	18.553	18.553	2	0.00010242	12941	DP690-16	141.08	113.76			0.85832	0.99827	NaN	1	0	Median	11931000	6415000	5516100	2513	925	2347	5081	12417;12418;12419;12420	12418		4	9606
DQHDTFFLR	0	1	Unmodified	1177.5516	0.55162144	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	9.33	3.77				1								2					16.115	16.115	2;3	6.2113E-05	10628	DP690-12	167.12	121.12			0.98006	1.1626	13.448	2	0	Median	127950000	71482000	56464000	2514	2434	2348	5082;5083;5084	12421;12422;12423;12424;12425;12426;12427;12428	12427		8	9606
DQHDTFFLRDPAEALQLPMDYVQR	0	2	Oxidation (M)	2920.3814	0.38139157	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	1	9.33	3.77				1								2					20.661	20.661	3;4	5.7812E-23	16690	DP690-12	189.07	174.05			0.75902	0.86061	15.806	3	0	Plateau	158400000	87748000	70650000	2515	2434	2349	5085;5086;5087	12429;12430;12431;12432;12433;12434;12435;12436;12437;12438	12433	2872	10	9606
DQIIELDQTGNQLK	1	0	Unmodified	1613.8261	0.82606496	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9.5	0.5									1	1							17.375	17.375	2	2.4997E-05	13004	DP690-10	133.42	78.636			0.80689	1.0089	14.292	2	0	Median	39699000	19418000	20281000	2516	2411	2350	5088;5089	12439;12440;12441;12442;12443	12440		5	9606
DQKLPHLER	1	1	Unmodified	1134.6146	0.61455605	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	3	0			1														11.18	11.18	3	0.0069216	3555	DP690-3	82.261	82.261			0.86595	0.96041	NaN	1	0	Median	2539600	1336900	1202700	2517	559	2351	5090	12444;12445;12446	12446		3	9606
DQLIYNLLK	1	0	Unmodified	1118.6336	0.63356015	352	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	6	0						1											20.701	20.701	2	0.0091926	14846	DP690-6	90.37	40.928			1.5092	1.6925	NaN	1	0	Median	4174800	1667800	2507000	2518	352	2352	5091	12447;12448;12449;12450	12449		4	9606
DQLLLGPTYATPK	1	0	Unmodified	1415.766	0.76603089	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	13	0													1				17.847	17.847	2	0.00036092	12641	DP690-13	111.5	77.63			0.64039	0.73656	NaN	1	0	Median	87707000	52135000	35572000	2519	894	2353	5092	12451;12452;12453	12451		3	9606
DQLQTFSEEHPVLLTEAPLNPR	0	1	Unmodified	2533.2813	0.28126682	942	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	6	0						1											19.447	19.447	3	8.3343E-05	13380	DP690-6	113.63	113.63			1.1753	1.3487	NaN	1	0	Median	8746400	4778800	3967600	2520	942	2354	5093	12454;12455;12456;12457	12455		4	9606
DQLRPTQLLQNVAR	0	2	Unmodified	1650.9166	0.91655173	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	1	10	0										1							17.203	17.203	3	0.021626	12713	DP690-10	82.515	52.792			NaN	NaN	NaN	0	0	Median	0	0	0	2521	2276	2355	5094	12458	12458		1	9606
DQLSVLENGVDIVVGTPGR	0	1	Unmodified	1967.0324	0.032369346	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	5.67	3.77			2								1						23.046	23.046	2	1.9493000000000002E-31	20666	DP690-11	257.81	225.77			0.87304	0.9941	32.074	2	0	Median	26262000	15764000	10498000	2522	1768	2356	5095;5096;5097	12459;12460;12461;12462;12463;12464;12465	12460		7	9606
DQMQQQLNDYEQLLDVK	1	0	Oxidation (M)	2122.9841	0.98409852	544	P20700	LMNB1	Lamin-B1	yes	yes	0	1	0	12	0												1					20.709	20.709	2	1.1325E-17	16721	DP690-12	222.56	222.56			0.70654	0.84909	NaN	1	0	Median	25745000	14074000	11670000	2523	544	2357	5098	12466;12467;12468;12469	12466	693	4	9606
DQMSHLFNVAHTLR	0	1	Oxidation (M)	1683.8151	0.81512312	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	0	2	0		1															14.555	14.555	4	0.0097906	7182	DP690-2	60.657	45.018			1.2982	1.3529	NaN	1	0	Median	26555000	11470000	15085000	2524	602	2358	5099	12470;12471	12471	809	2	9606
DQMSHLFNVAHTLR	0	1	Unmodified	1667.8202	0.8202085	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															16.83	16.83	3	0.045646	9906	DP690-2	48.391	29.068			1.3825	1.4477	NaN	1	0	Median	5750600	2118000	3632600	2525	602	2358	5100	12472	12472		1	9606
DQNILLGTTYR	0	1	Unmodified	1292.6725	0.67246486	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	5.5	3.5		1							1								17.507	17.507	2	2.7295E-06	11889	DP690-9	204.34	160.7			0.93088	0.98171	12.567	2	0	Median	301910000	161780000	140140000	2526	1046	2359	5101;5102	12473;12474;12475;12476;12477;12478;12479;12480;12481;12482	12479		10	9606
DQPAFTPSGILTPHALGSR	0	1	Unmodified	1964.0116	0.011574324	2088	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	11	0											2						18.392	18.392	3	6.9229E-05	14392	DP690-11	110.34	110.34			0.78219	0.94183	NaN	1	0	Median	78383000	43589000	34794000	2527	2088	2360	5103;5104	12483;12484;12485	12484		3	9606
DQPANPTEEYAQLFAALIAR	0	1	Unmodified	2217.1066	0.10659692	1216	Q13503	MED21	Mediator of RNA polymerase II transcription subunit 21	yes	yes	0	0	0	16	0																2	26.369	26.369	2	1.4619E-06	20355	DP690-16	137.8	118.74			0.5586	0.62956	1.4619	2	0	Median	1098700	636170	462500	2528	1216	2361	5105;5106	12486;12487;12488;12489;12490	12488		5	9606
DQPGDYEPFYDVLHSYMKIEELLK	2	0	Unmodified	2928.3892	0.38916229	2541				yes	yes	0	0	1	7	0							1										16.462	16.462	4	0.0034664	10128	DP690-7	57.248	42.185	+		0.81561	0.87202	NaN	1	0	Median	57489000	29126000	28363000	2529	2541	2362	5107	12491;12492	12491		2	9606
DQPPNSVEGLLNALR	0	1	Unmodified	1621.8424	0.84238373	2226	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	6	0						1											22.738	22.738	2	0.015091	17068	DP690-6	99.215	43.815			NaN	NaN	NaN	0	0	Median	1956400	1956400	0	2530	2226	2363	5108	12493;12494;12495	12493		3	9606
DQQEAALVDMVNDGVEDLR	0	1	Oxidation (M)	2131.9692	0.96917674	432	P09211	GSTP1	Glutathione S-transferase P	yes	yes	0	1	0	7	0							2										20.274	20.274	2	2.0395E-08	14876	DP690-7	161.04	111.71			NaN	NaN	NaN	0	0	Median	10221000	5505300	4716100	2531	432	2364	5109;5110	12496;12497;12498;12499	12496	502	4	9606
DQQPGTFLLR	0	1	Unmodified	1173.6142	0.6142217	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	3	0			1														17.677	17.677	2	0.0011627	12177	DP690-3	107.69	73.772			0.91285	1.0434	NaN	1	0	Median	23986000	10667000	13319000	2532	724	2365	5111	12500;12501	12500		2	9606
DQSSWQNSDASQEVGGHQER	0	1	Unmodified	2243.9428	0.94277907	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	8.25	3.63		1								2	1						12.793	12.793	2;3	5.4972E-18	6287	DP690-10	202.81	176.89			0.78006	0.95754	2.5095	3	0	Plateau	196560000	107430000	89122000	2533	2065	2366	5112;5113;5114;5115	12502;12503;12504;12505;12506;12507;12508;12509;12510;12511;12512;12513;12514;12515	12503		14	9606
DQTIVDPFSSK	1	0	Unmodified	1235.6034	0.60338224	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							17.976	17.976	2	0.02623	13855	DP690-10	83.045	54.089			0.81042	0.99625	NaN	1	0	Median	45040000	21704000	23335000	2534	2424	2367	5116	12516	12516		1	9606
DQTNEGKELAEQGEPDSSTLSLAEK	2	0	Unmodified	2675.241	0.24097773	323	O95425	SVIL	Supervillin	yes	yes	0	0	1	10	0										1							15.98	15.98	3	0.001314	11035	DP690-10	65.387	53.372			0.85072	1.0937	NaN	1	0	Median	54497000	25899000	28599000	2535	323	2368	5117	12517	12517		1	9606
DQTPDENEEVIVR	0	1	Unmodified	1542.7162	0.71618016	2523	Q9Y6M1	IGF2BP2	Insulin-like growth factor 2 mRNA-binding protein 2	yes	yes	0	0	0	8	4				1								1					14.593	14.593	2	0.00026662	8471	DP690-12	115.91	115.91			1.2384	1.4677	NaN	1	0	Median	46500000	18471000	28028000	2536	2523	2369	5118;5119	12518;12519;12520;12521	12518		4	9606
DQVANSAFVER	0	1	Unmodified	1234.5942	0.59421454	409	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	3	0			1														13.962	13.962	2	0.00010937	7199	DP690-3	162.64	107.91			1.3183	1.4344	NaN	1	0	Median	61143000	25125000	36018000	2537	409	2370	5120	12522;12523;12524;12525	12522		4	9606
DQVIYPDGREDQK	1	1	Unmodified	1561.7372	0.73724996	606	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	1	12	0												1					12.113	12.113	2	0.00079192	5007	DP690-12	160.91	54.032			0.84441	1.0502	NaN	1	0	Median	13180000	7876900	5303300	2538	606	2371	5121	12526;12527	12526		2	9606
DQVTAQEIFQDNHEDGPTAK	1	0	Unmodified	2242.0138	0.013818748	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	3	0			1														15.771	15.771	3	8.4159E-06	9683	DP690-3	125.03	109.78			3.425	3.6815	NaN	1	0	Median	16896000	4980900	11915000	2539	480	2372	5122	12528;12529;12530	12529		3	9606
DREEALHQFR	0	2	Unmodified	1299.632	0.63199703	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	1	9.71	3.99				2					1		1	1	1		1		11.137	11.137	3	0.00073354	3592	DP690-12	103.34	76.669			0.88155	0.97782	9.725	7	0	Median	1430100000	741150000	688960000	2540	96	2373	5123;5124;5125;5126;5127;5128;5129	12531;12532;12533;12534;12535;12536;12537;12538;12539;12540;12541;12542;12543;12544;12545;12546;12547;12548;12549;12550;12551;12552;12553	12536		23	9606
DREEDEEDAYER	0	2	Unmodified	1554.607	0.60702365	803	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	1	11	0											1						11.57	11.57	2	1.164E-08	4398	DP690-11	253.97	253.97			0.83412	1.0282	NaN	1	0	Median	40922000	22153000	18769000	2541	803	2374	5130	12554;12555;12556;12557	12556		4	9606
DREEDEEDAYERR	0	3	Unmodified	1710.7081	0.70813467	803	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	2	11	0											1						10.921	10.921	3	0.018734	3477	DP690-11	92.151	64.72			0.7915	0.83981	NaN	1	0	Median	102780000	54972000	47807000	2542	803	2375	5131	12558;12559	12559		2	9606
DREGFFTNGLTLGAK	1	1	Unmodified	1624.8209	0.82092001	656	P35080	PFN2	Profilin-2	yes	yes	0	0	1	10.7	3.77								2								1	18.115	18.115	2;3	7.1164E-06	11535	DP690-8	127.66	96.45			0.78548	0.91329	20.733	3	0	Median	46450000	25235000	21214000	2543	656	2376	5132;5133;5134	12560;12561;12562;12563;12564;12565;12566;12567	12562		8	9606
DREVGIPPEQSLETAK	1	1	Unmodified	1767.9003	0.90029254	940	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	1	13	0													2				14.31	14.31	2;3	1.3346E-11	7762	DP690-13	238.65	205.37			0.67629	0.80024	3.9193	2	0	Median	121190000	72285000	48907000	2544	940	2377	5135;5136	12568;12569;12570;12571;12572;12573;12574	12570		7	9606
DRHWHEACFHCSQCR	0	2	Unmodified	2084.8264	0.82644964	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	14	0														2			10.313	10.313	4;5	0.00031648	2555	DP690-14	97.2	97.2			1.1239	1.3208	NaN	1	0	Median	87377000	17020000	70357000	2545	1258	2378	5137;5138	12575;12576;12577	12575		3	9606
DRLSASSLTMESFAFLWAGGR	0	2	Unmodified	2301.1212	0.12120113	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	11	0											1						24.057	24.057	3	0.00019447	21789	DP690-11	101.17	101.17			0.85927	1.0592	NaN	1	0	Median	3063000	1633900	1429100	2546	1078	2379	5139	12578;12579	12579		2	9606
DRPASGSPFQLFLSK	1	1	Unmodified	1648.8573	0.85730551	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	1	11	0											2						19.659	19.659	2;3	0.00022004	16218	DP690-11	106.35	106.35			0.69165	0.81783	NaN	1	0	Median	144590000	108620000	35968000	2547	1932	2380	5140;5141	12580;12581;12582;12583;12584	12580		5	9606
DRPFFAGLVK	1	1	Unmodified	1148.6342	0.63422886	501	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	1	12	4								1								1	17.508	17.508	2	0.0064026	11736	DP690-16	104.42	51.487			0.78358	0.89969	14.453	2	0	Median	60934000	33405000	27529000	2548	501	2381	5142;5143	12585;12586;12587;12588;12589	12585		5	9606
DRPFFPGLVK	1	1	Unmodified	1174.6499	0.64987892	562	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	1	8	0								1									17.111	17.111	2	0.0088578	10501	DP690-8	100.25	70.17			0.78768	0.91586	NaN	1	0	Median	73913000	40576000	33337000	2549	562	2382	5144	12590;12591;12592;12593	12593		4	9606
DRPFKPYNFLAHGVLPDSGHLHPLLK	2	1	Unmodified	2967.5872	0.58716609	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	2	12.8	0.829												2	1	1			17.554	17.554	5;6	1.9945E-05	12603	DP690-12	121.5	102.55			0.5756	0.63525	9.558	3	0	Median	1191200000	697550000	493670000	2550	2434	2383	5145;5146;5147;5148	12594;12595;12596;12597;12598;12599;12600;12601;12602;12603	12598		10	9606
DRQELLQHSLPLGSYLLKPVQR	1	2	Unmodified	2589.4391	0.43910487	7	A1L390	PLEKHG3	Pleckstrin homology domain-containing family G member 3	yes	yes	0	0	2	10	0										1							18.097	18.097	4	0.0099811	14119	DP690-10	59.154	47.532			0.51691	0.59511	NaN	1	0	Median	83096000	60980000	22116000	2551	7	2384	5149	12604	12604		1	9606
DRVGGFPNFLSNAFVSTAK	1	1	Unmodified	2026.0272	0.027224389	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	1	15	0															1		20.933	20.933	3	0.042626	16219	DP690-15	51.684	32.397			0.63422	0.74083	NaN	1	0	Median	2473200	1398900	1074300	2552	1983	2385	5150	12605	12605		1	9606
DRVLAELPQCLR	0	2	Unmodified	1468.782	0.78203208	2059	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	1	15	0															2		16.859	16.859	2;3	0.0022118	11230	DP690-15	84.352	56.676			0.82573	0.89574	NaN	1	0	Median	46223000	20413000	25810000	2553	2059	2386	5151;5152	12606;12607;12608	12606		3	9606
DRVTSAVEALLSADSASR	0	2	Unmodified	1846.9385	0.93846896	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	1	3	0			1														21.31	21.31	3	1.6689E-06	16649	DP690-3	129.89	99.722			0.84257	0.87162	NaN	1	0	Median	22436000	12477000	9959600	2554	746	2387	5153	12609;12610	12609		2	9606
DRYDSFIELQEK	1	1	Unmodified	1541.7362	0.73618733	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	1	9.25	3.27				1					1			2					16.861	16.861	2;3	7.1034E-05	11559	DP690-12	120.53	72.535			0.91326	0.96863	9.3922	4	0	Median	1626799999.9999998	839010000	787750000	2555	2210	2388	5154;5155;5156;5157	12611;12612;12613;12614;12615;12616;12617;12618;12619;12620;12621;12622;12623;12624	12615		14	9606
DSAIQQQVANLQMK	1	0	Oxidation (M)	1588.7879	0.78790532	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	5.5	3.5		1							1								16.444	16.444	2	4.8542E-05	10404	DP690-9	136.63	88.033			1.0845	1.2176	19.743	2	0	Median	15288000	7145400	8142700	2556	1264	2389	5158;5159	12625;12626;12627;12628;12629;12630	12627	1907	6	9606
DSALEFLTQLSR	0	1	Unmodified	1378.7092	0.70924429	1500	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	0	0	3	0			1														23.237	23.237	2	9.3115E-08	18856	DP690-3	202.96	174.24			1.1875	1.3316	NaN	1	0	Median	7639800	3187600	4452200	2557	1500	2390	5160	12631;12632;12633;12634	12633		4	9606
DSAQTSVTQAQR	0	1	Unmodified	1290.6164	0.61640654	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										3							10.513	10.513	2	9.8724E-05	2937	DP690-10	155.06	88.759			NaN	NaN	NaN	0	0	Median	75571000	0	75571000	2558	1301	2391	5161;5162;5163	12635;12636;12637	12635		3	9606
DSAVAISGADSR	0	1	Unmodified	1147.5469	0.54692999	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	0	1																12.37	12.37	2	0.0065121	4225	DP690-1	81.771	52.027			1.1018	1.0841	NaN	1	0	Median	2270600	992090	1278500	2559	1555	2392	5164	12638	12638		1	9606
DSAYQSITHYRPVSASR	0	2	Unmodified	1936.9391	0.93913766	817	P50402	EMD	Emerin	yes	yes	0	0	1	14	0														1			14.15	14.15	3	0.00074844	7713	DP690-14	86.467	68.89			0.64956	0.76335	NaN	1	0	Median	289620000	168670000	120940000	2560	817	2393	5165	12639;12640;12641;12642	12642		4	9606
DSCISPSEPETK	1	0	Unmodified	1348.5817	0.58166052	1720	Q8TDB6	DTX3L	E3 ubiquitin-protein ligase DTX3L	yes	yes	0	0	0	11	0											2						11.887	11.887	2	0.0031121	4825	DP690-11	128.81	91.303			NaN	NaN	NaN	0	0	Median	20273000	20273000	0	2561	1720	2394	5166;5167	12643;12644;12645	12643		3	9606
DSDEADLVLAK	1	0	Unmodified	1174.5717	0.57174776	1189	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	15	0															1		16.295	16.295	2	0.00015861	10387	DP690-15	149.94	114.5			0.8217	0.93511	NaN	1	0	Median	72889000	38602000	34286000	2562	1189	2395	5168	12646;12647;12648	12646		3	9606
DSDFSFQEPIMALR	0	1	Unmodified	1654.7661	0.76610725	1197	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	10	0										1							21.763	21.763	2	0.063484	19165	DP690-10	83.045	51.202			NaN	NaN	NaN	0	0	Median	2939900	0	2939900	2563	1197	2396	5169	12649	12649		1	9606
DSDLATQNRPLWQCFLGR	0	2	Unmodified	2176.0484	0.048370536	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	1	10	0										1							20.465	20.465	3	0.00025912	17437	DP690-10	97.2	71.964			0.98393	1.1719	NaN	1	0	Median	58545000	28429000	30116000	2564	1377	2397	5170	12650;12651;12652	12650		3	9606
DSEDMGVVVSLGTGNR	0	1	Unmodified	1634.757	0.75699912	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						18.532	18.532	2	2.0939E-09	14488	DP690-11	193.15	163.38			1.0945	1.3056	NaN	1	0	Median	37615000	18564000	19051000	2565	897	2398	5171	12653;12654;12655;12656	12653		4	9606
DSEDMGVVVSLGTGNR	0	1	Oxidation (M)	1650.7519	0.75191374	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	10	1									1		1						16.339	16.339	2	4.2934E-20	11341	DP690-11	210.44	160.41			0.73991	0.9236	NaN	1	0	Median	142180000	135040000	7140300	2566	897	2398	5172;5173	12657;12658;12659;12660;12661;12662	12658	1390	6	9606
DSEEPFSSVEIQAALSK	1	0	Unmodified	1835.8789	0.8788884	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	7.67	3.4			1						1		1						20.573	20.573	2	1.2945999999999998E-22	17346	DP690-11	231.74	179.58			0.70559	0.80767	3.6948	3	0	Median	196320000	114250000	82064000	2567	581	2399	5174;5175;5176	12663;12664;12665;12666;12667;12668;12669;12670;12671	12663		9	9606
DSEKENQIPEEAGSSGLGK	2	0	Unmodified	1973.9178	0.9177931	1305	Q15004	KIAA0101	PCNA-associated factor	yes	yes	0	0	1	13.3	3.77								1								2	13.138	13.138	2;3	1.556E-16	6145	DP690-16	205.3	186.17			0.72501	0.81796	4.3994	3	0	Median	52706000	30496000	22210000	2568	1305	2400	5177;5178;5179	12672;12673;12674;12675;12676;12677;12678;12679;12680;12681;12682	12677		11	9606
DSENKGPAFVNPLIPESPEEEELFR	1	1	Unmodified	2842.3661	0.36611866	2453	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	1	13	0													1				21.535	21.535	3	0.0091993	17405	DP690-13	77.231	50.814			NaN	NaN	NaN	0	0	Median	8078200	8078200	0	2569	2453	2401	5180	12683	12683		1	9606
DSEQVTVSLQNLGIHAGAYHANLEPEDK	1	0	Unmodified	3034.4632	0.46320695	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	10	1									1		1						18.473	18.473	3	3.3782E-25	14426	DP690-11	182.72	182.72			0.67287	0.8141	NaN	1	0	Median	46831000	26441000	20390000	2570	751	2402	5181;5182	12684;12685	12684		2	9606
DSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHR	1	1	Unmodified	3628.787	0.7870007	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	11	0											1						16.996	16.996	5	0.0016736	12302	DP690-11	51.479	40.197			0.73623	0.86931	NaN	1	0	Median	86828000	55303000	31525000	2571	751	2403	5183	12686	12686		1	9606
DSFDDRGPSLNPVLDYDHGSR	0	2	Unmodified	2361.0622	0.062165924	735	P43243	MATR3	Matrin-3	yes	yes	0	0	1	11	0											1						16.965	16.965	4	0.0022844	12163	DP690-11	65.855	46.503			0.64221	0.79166	NaN	1	0	Median	118050000	72275000	45773000	2572	735	2404	5184	12687;12688;12689;12690	12687		4	9606
DSFHHNVAALR	0	1	Unmodified	1265.6265	0.62651772	1987	Q9BRQ8	AIFM2	Apoptosis-inducing factor 2	yes	yes	0	0	0	14	0														1			10.929	10.929	3	0.00012265	3391	DP690-14	118.03	92.56			1.1219	1.367	NaN	1	0	Median	18604000	9882500	8721000	2573	1987	2405	5185	12691;12692;12693;12694	12694		4	9606
DSFIGENSR	0	1	Unmodified	1023.4621	0.46213773	1950;62	Q99661;O00139	KIF2C;KIF2A	Kinesin-like protein KIF2C;Kinesin-like protein KIF2A	no	no	0	0	0	11.5	0.5											1	1					13.438	13.438	2	0.00043428	7064	DP690-11	153.78	112.13			0.89224	0.96701	NaN	1	0	Median	440560000	258930000	181640000	2574	1950;62	2406	5186;5187	12695;12696;12697;12698;12699;12700	12695		6	9606
DSGAASEQATAAPNPCSSSSR	0	1	Unmodified	2049.8658	0.8657743	2007	Q9BU23	LMF2	Lipase maturation factor 2	yes	yes	0	0	0	7.67	2.62				1					1	1							11.817	11.817	2	2.4675000000000003E-54	4930	DP690-10	250.05	171.35			0.84482	1.0164	31.765	2	0	Median	21401000	17236000	4164900	2575	2007	2407	5188;5189;5190	12701;12702;12703;12704;12705;12706;12707;12708;12709;12710	12702		10	9606
DSGEEAAEPSAPSR	0	1	Unmodified	1401.6008	0.60081606	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	3.5	0.5			1	1													10.914	10.914	2	2.4744E-16	3322	DP690-3	272.94	238.55			0.68029	0.77876	14.115	2	0	Median	17056000	9718100	7338000	2576	1076	2408	5191;5192	12711;12712;12713;12714;12715;12716;12717	12714		7	9606
DSGITYLGIK	1	0	Unmodified	1065.5706	0.57062555	833	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	0	0	16	0																1	17.882	17.882	2	0.043433	12140	DP690-16	88.37	39.614			NaN	NaN	NaN	0	0	Median	3706700	3706700	0	2577	833	2409	5193	12718	12718		1	9606
DSGNIPEAIASYR	0	1	Unmodified	1391.6681	0.66810776	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	11	0											1						17.896	17.896	2	0.068908	13555	DP690-11	84.479	56.271			NaN	NaN	NaN	0	0	Median	0	0	0	2578	149	2410	5194	12719	12719		1	9606
DSGSFVAFQNIPGSELMSSFAK	1	0	Unmodified	2318.0889	0.088897947	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	11	0											1						24.051	24.051	2	2.9529E-48	21765	DP690-11	287.42	266.17			0.80374	0.9924	NaN	1	0	Median	13815000	6916200	6898400	2579	723	2411	5195	12720;12721;12722	12721		3	9606
DSGSFVAFQNIPGSELMSSFAK	1	0	Oxidation (M)	2334.0838	0.083812569	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	1	0	11	0											1						21.666	21.666	2	1.3291E-06	18837	DP690-11	136.81	98.015			NaN	NaN	NaN	0	0	Median	5515500	0	5515500	2580	723	2411	5196	12723	12723	1063	1	9606
DSIEKEHVEEISELFYDAK	2	0	Unmodified	2280.0798	0.079773049	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	1	13	0													1				19.67	19.67	3	4.1098E-12	15008	DP690-13	174.72	152.81			0.85234	0.9533	NaN	1	0	Median	77835000	36788000	41047000	2581	2431	2412	5197	12724;12725;12726	12725		3	9606
DSIFSNLTGQLDYQGFEK	1	0	Unmodified	2060.9691	0.96910039	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	11	0											1						22.615	22.615	2	2.0326000000000002E-29	20049	DP690-11	231.69	201.69			0.81787	0.99815	NaN	1	0	Median	26525000	15312000	11213000	2582	713	2413	5198	12727;12728	12727		2	9606
DSIHLTPVLTSSILNQLTGR	0	1	Unmodified	2164.1852	0.18518159	2076	Q9GZT4	SRR	Serine racemase	yes	yes	0	0	0	6	0						1											22.546	22.546	3	1.0765E-06	16863	DP690-6	130	116.77			0.72978	0.83125	NaN	1	0	Median	4910600	2862200	2048400	2583	2076	2414	5199	12729;12730;12731;12732	12732		4	9606
DSIPSEVDYETR	0	1	Unmodified	1409.6311	0.63105355	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															15.556	15.556	2	0.0046233	8395	DP690-2	119.53	84.26			NaN	NaN	NaN	0	0	Median	9655600	9655600	0	2584	2418	2415	5200	12733	12733		1	9606
DSIVAELDR	0	1	Unmodified	1016.5138	0.51383895	107	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	6	0						1											17.62	17.62	2	0.0032898	11302	DP690-6	106.68	42.419			2.0458	2.3401	NaN	1	0	Median	5706900	1596600	4110300	2585	107	2416	5201	12734;12735;12736	12735		3	9606
DSIVHQAGMLK	1	0	Oxidation (M)	1213.6125	0.61250714	139	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	1	0	14	0														1			12.305	12.305	2	0.040666	5088	DP690-14	86.882	42.504			NaN	NaN	NaN	0	0	Median	15011000	0	15011000	2586	139	2417	5202	12737	12737	158	1	9606
DSIVHQAGMLKR	1	1	Unmodified	1353.7187	0.71870354	139	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	1	14	0														1			12.385	12.385	3	0.0021379	5200	DP690-14	79.201	39.621			0.90271	1.1333	NaN	1	0	Median	21243000	10454000	10789000	2587	139	2418	5203	12738;12739	12738		2	9606
DSLDPSFTHAMQLLTAEIEK	1	0	Oxidation (M)	2261.0886	0.088563596	1133	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	1	0	12	0												2					21.458	21.458	2;3	5.7513E-10	17485	DP690-12	149.95	149.95			0.80004	0.95322	NaN	1	0	Median	46553000	24835000	21718000	2588	1133	2419	5204;5205	12740;12741;12742;12743;12744	12740	1754	5	9606
DSLDPSFTHAMQLLTAEIEK	1	0	Unmodified	2245.0936	0.093648974	1133	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	12	0												2					24.199	24.199	3	0.0021247	20814	DP690-12	97.271	65.09			NaN	NaN	NaN	0	0	Median	1816800	1816800	0	2589	1133	2419	5206;5207	12745;12746;12747	12746		3	9606
DSLGAYASQDANEQGQDLGK	1	0	Unmodified	2065.9189	0.91885573	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										1							15.592	15.592	2	0.0012071	10385	DP690-10	139.64	105.37			NaN	NaN	NaN	0	0	Median	0	0	0	2590	2065	2420	5208	12748	12748		1	9606
DSLGAYASQDANEQGQDLGKR	1	1	Unmodified	2222.02	0.019966759	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	1	10.5	0.5										1	1						14.329	14.329	3	0.0083161	8592	DP690-10	81.788	41.774			0.89973	1.1345	NaN	1	0	Median	72822000	57256000	15566000	2591	2065	2421	5209;5210	12749;12750;12751	12749		3	9606
DSLHQPQYVEK	1	0	Unmodified	1342.6517	0.65172941	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	2	0		1															11.564	11.564	2	0.0047965	3666	DP690-2	88.596	61.481			1.0752	1.0774	NaN	1	0	Median	4513600	2236300	2277400	2592	1803	2422	5211	12752;12753	12752		2	9606
DSLIDSLT	0	0	Unmodified	862.42838	0.42837799	907	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	7	0							1										21.87	21.87	1	0.0086704	16882	DP690-7	110.61	70.039			NaN	NaN	NaN	0	0	Median	0	0	0	2593	907	2423	5212	12754	12754		1	9606
DSLIFLVDASK	1	0	Unmodified	1206.6496	0.64960415	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	8	4				1								1					21.062	21.062	2	0.00017319	15836	DP690-4	145.46	106.65			1.5726	1.8004	81.464	2	0	Median	47603000	21958000	25646000	2594	479	2424	5213;5214	12755;12756;12757;12758;12759;12760;12761;12762;12763	12760		9	9606
DSLIIIDELGR	0	1	Unmodified	1242.682	0.68196691	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	7	4			1								1						21.315	21.315	2	7.5771E-05	18354	DP690-11	177.3	150.05			0.86887	1.0201	7.4567	2	0	Median	124880000	67448000	57436000	2595	736	2425	5215;5216	12764;12765;12766;12767;12768	12765		5	9606
DSLINLK	1	0	Unmodified	801.45962	0.45961853	1659	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	0	0	0	16	0																1	16.013	16.013	1	0.07383	10085	DP690-16	128.48	36.9			0.82373	0.94439	NaN	1	0	Median	35955000	19763000	16192000	2596	1659	2426	5217	12769	12769		0	9606
DSLIQSLATQLELDGFER	0	1	Unmodified	2034.0269	0.026949617	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	9.33	0.471									2	1							26.135	26.135	2	4.8412E-18	24376	DP690-10	212.83	165.79			0.74009	0.9178	NaN	1	0	Median	7211100	4466100	2744900	2597	1794	2427	5218;5219;5220	12770;12771;12772;12773;12774;12775;12776;12777;12778	12774		9	9606
DSLLASLLDGVR	0	1	Unmodified	1257.6929	0.69286595	241	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	10	0										1							24.386	24.386	2	0.0003005	22353	DP690-10	167.67	99.048			0.83291	1.0412	NaN	1	0	Median	15977000	8409900	7567600	2598	241	2428	5221	12779;12780;12781;12782;12783	12781		5	9606
DSLLGDKGQTAR	1	1	Unmodified	1259.647	0.64697839	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	1	11	0											1						11.411	11.411	2	0.025467	4145	DP690-11	81.525	44.181			0.67246	0.83498	NaN	1	0	Median	25143000	14350000	10793000	2599	653	2429	5222	12784;12785;12786	12786		3	9606
DSLSNATPCAVLRPSGAVVTLECVEK	1	1	Unmodified	2772.3786	0.37861438	2454	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	1	14	0														1			19.005	19.005	3	2.4932E-07	14353	DP690-14	139.04	112.73			0.91134	1.0804	NaN	1	0	Median	91243000	47993000	43250000	2600	2454	2430	5223	12787;12788;12789;12790	12789		4	9606
DSLSVNEFK	1	0	Unmodified	1037.5029	0.50293991	1944	Q99584	S100A13	Protein S100-A13	yes	yes	0	0	0	16	0																1	15.794	15.794	2	0.04021	9674	DP690-16	70.525	38.57			0.98246	1.1489	NaN	1	0	Median	21748000	10339000	11409000	2601	1944	2431	5224	12791	12791		1	9606
DSLTLVFVETK	1	0	Unmodified	1250.6758	0.6758189	96	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	11	0											1						20.294	20.294	2	0.00017777	17012	DP690-11	123.86	102.92			0.92061	1.1127	NaN	1	0	Median	57297000	26024000	31273000	2602	96	2432	5225	12792;12793;12794;12795	12793		4	9606
DSLYVDGDCTMDIR	0	1	Oxidation (M)	1674.6865	0.68653629	656	P35080	PFN2	Profilin-2	yes	yes	0	1	0	12	4								1								1	16.027	16.027	2	0.0001326	9146	DP690-8	149.94	131.61			0.80359	0.8882	4.0079	2	0	Median	83154000	45958000	37196000	2603	656	2433	5226;5227	12796;12797;12798;12799;12800;12801;12802	12800	924	7	9606
DSNNLCLHFNPR	0	1	Unmodified	1485.6783	0.67829529	433	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	12	4								2								2	15.175	15.175	2;3	1.5297E-07	8674	DP690-16	199.11	159.19			0.72074	0.65055	9.9966	4	0	Linear	3400599999.9999995	1986699999.9999998	1413900000	2604	433	2434	5228;5229;5230;5231	12803;12804;12805;12806;12807;12808;12809;12810;12811;12812;12813;12814;12815;12816;12817;12818	12808		16	9606
DSPDLLLLLR	0	1	Unmodified	1153.6707	0.67067394	1757	Q8WX92	NELFB	Negative elongation factor B	yes	yes	0	0	0	8	4				1								1					23.151	23.151	2	0.00068813	19611	DP690-12	113.26	70.657			0.80215	0.95069	10.373	2	0	Median	14511000	8093000	6417600	2605	1757	2435	5232;5233	12819;12820;12821;12822;12823;12824;12825	12820		7	9606
DSPLQGSGQQNSQAGQR	0	1	Unmodified	1756.8089	0.80885177	343	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	0	6.5	3.55			3						1	1	1						10.831	10.831	2	2.745E-33	3531	DP690-10	311.54	248.22			0.77359	0.96891	11.123	3	0	Median	67187000	35839000	31348000	2606	343	2436	5234;5235;5236;5237;5238;5239	12826;12827;12828;12829;12830;12831;12832;12833;12834;12835;12836;12837;12838;12839;12840;12841;12842	12827		17	9606
DSQDAGGFGPEDR	0	1	Unmodified	1349.5484	0.54838655	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	11.5	3.32		1							2	1	1	1	3	3	1		13.326	13.326	2	1.2405E-10	6139	DP690-9	241.4	198.8			0.75915	0.84053	8.8908	6	0	Median	734620000	416600000	318030000	2607	1319	2437	5240;5241;5242;5243;5244;5245;5246;5247;5248;5249;5250;5251;5252	12843;12844;12845;12846;12847;12848;12849;12850;12851;12852;12853;12854;12855;12856;12857;12858;12859;12860;12861;12862;12863;12864;12865;12866;12867;12868;12869;12870;12871	12869		29	9606
DSQLYAVDYETLTRPFSGR	0	2	Unmodified	2217.0702	0.070211415	1056	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	1	15	0															1		20.442	20.442	3	0.0064812	15674	DP690-15	59.728	45.997			0.84705	0.91888	NaN	1	0	Median	1744100	995040	749030	2608	1056	2438	5253	12872	12872		1	9606
DSQVVQVVLDGLK	1	0	Unmodified	1398.7718	0.77184455	92	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	0	0	8	4				1								1					21.739	21.739	2	8.0829E-05	18054	DP690-12	146.36	121.29			0.91238	1.1	NaN	1	0	Median	17586000	7922300	9663300	2609	92	2439	5254;5255	12873;12874;12875;12876;12877;12878	12876		6	9606
DSSSTDSANEKPALIPR	1	1	Unmodified	1786.8697	0.86972069	2223	Q9NUQ6	SPATS2L	SPATS2-like protein	yes	yes	0	0	1	12	0												2					13.179	13.179	2;3	0.0085657	6451	DP690-12	61.265	38.727			0.85877	1.0722	NaN	1	0	Median	45045000	15451000	29594000	2610	2223	2440	5256;5257	12879;12880	12879		2	9606
DSSTCPGDYVLSVSENSR	0	1	Unmodified	1971.848	0.84799897	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	6	0						1											18.133	18.133	2	2.7679999999999996E-50	11832	DP690-6	328.43	287.32			0.77384	0.83192	NaN	1	0	Median	88358000	49952000	38406000	2611	753	2441	5258	12881;12882;12883;12884;12885;12886	12885		6	9606
DSSTMSHTVAGGGSGDHSHQVR	0	1	Unmodified	2208.9567	0.956655	722	P41743	PRKCI	Protein kinase C iota type	yes	yes	0	0	0	12	0												1					10.22	10.22	4	0.074322	2439	DP690-12	40.689	13.418			0.80042	0.95731	NaN	1	0	Median	28116000	15015000	13101000	2612	722	2442	5259	12887	12887		0	9606
DSTEVEISTGER	0	1	Unmodified	1321.5998	0.59975342	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										1							13.688	13.688	2	0.00015172	7586	DP690-10	158.47	88.646			0.73463	0.91963	NaN	1	0	Median	58264000	31736000	26528000	2613	1901	2443	5260	12888;12889;12890;12891;12892	12889		5	9606
DSTEYFIVFEPR	0	1	Unmodified	1501.7089	0.70890994	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	9.5	0.5									1	1							21.74	21.74	2	0.00014368	19061	DP690-10	174.98	147.87			0.76905	0.95251	NaN	1	0	Median	106320000	61390000	44931000	2614	13	2444	5261;5262	12893;12894;12895;12896	12893		4	9606
DSTLIMQLLR	0	1	Oxidation (M)	1204.6486	0.64855829	599;970;641;1014;1113;640;960	P31946;P63104;P31947;P27348;P61981;P62258;Q04917	YWHAB;YWHAZ;SFN;YWHAQ;YWHAG;YWHAE;YWHAH	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein theta;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta	no	no	0	1	0	11	4							1								1		21.672	21.672	2	0.00027255	16382	DP690-7	133.23	63.206			0.92912	1.0528	18.925	2	0	Median	66943000	33119000	33824000	2615	640;1014;641;599;960;970;1113	2445	5263;5264	12897;12898;12899;12900;12901;12902;12903;12904;12905;12906;12907;12908;12909	12906	798	13	9606
DSTLIMQLLR	0	1	Unmodified	1188.6536	0.65364367	599;970;641;1014;1113;640;960	P31946;P63104;P31947;P27348;P61981;P62258;Q04917	YWHAB;YWHAZ;SFN;YWHAQ;YWHAG;YWHAE;YWHAH	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein theta;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta	no	no	0	0	0	7	0							1										22.768	22.768	2	9.1532E-05	17832	DP690-7	152.63	61.562			0.97954	1.1312	NaN	1	0	Median	9201600	4354500	4847200	2616	640;1014;641;599;960;970;1113	2445	5265	12910;12911;12912;12913	12912		4	9606
DSVFLSCSEDNR	0	1	Unmodified	1427.5987	0.59870757	1976	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	6	0						1											15.592	15.592	2	1.2381E-08	8845	DP690-6	212.03	166.88			3.3338	3.7972	NaN	1	0	Median	15371000	3557000	11814000	2617	1976	2446	5266	12914;12915	12914		2	9606
DSVVLSLLK	1	0	Unmodified	972.58555	0.58554733	171	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	3	0			1														20.311	20.311	2	0.043086	15495	DP690-3	69.628	14.123			1.1961	1.2541	NaN	1	0	Median	4666400	2178100	2488300	2618	171	2447	5267	12916;12917	12916		2	9606
DSYDSYATHNE	0	0	Unmodified	1300.4844	0.48438931	1241	Q14011	CIRBP	Cold-inducible RNA-binding protein	yes	yes	0	0	0	16	0																1	13.05	13.05	2	1.3495E-06	5936	DP690-16	166.07	157.16			NaN	NaN	NaN	0	0	Median	0	0	0	2619	1241	2448	5268	12918;12919	12918		2	9606
DSYLILETLPTEYDSR	0	1	Unmodified	1913.9258	0.92583859	519	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	5	0					1												21.997	21.997	2	6.8039E-07	16842	DP690-5	145.81	123.32			0.85406	0.89578	NaN	1	0	Median	15562000	8388400	7173100	2620	519	2449	5269	12920;12921	12920		2	9606
DSYVGDEAQSK	1	0	Unmodified	1197.515	0.51496116	926;1023;1029	P60709;P63261;P68032;P68133;P63267;P62736	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	10	5.69	1		1											4			26.219	26.219	2	0.00020587	3190	DP690-1	122.96	92.275			0.80308	0.86559	18.085	4	0	Median	35973000	20167000	15806000	2621	926;1023;1029	2450	5270;5271;5272;5273;5274;5275	12922;12923;12924;12925;12926;12927;12928;12929;12930	12924		9	9606
DSYVGDEAQSKR	1	1	Unmodified	1353.6161	0.61607219	926;1023;1029	P60709;P63261;P68032;P68133;P63267;P62736	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	1	12.4	1.96										2				3			10.479	10.479	2	2.7919E-06	2724	DP690-14	162.64	123.09			NaN	NaN	NaN	0	0	Median	86804000	14237000	72567000	2622	926;1023;1029	2451	5276;5277;5278;5279;5280	12931;12932;12933;12934;12935	12933		5	9606
DTAASGYGTQNIR	0	1	Unmodified	1352.6321	0.6320566	2454	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	14	0														1			12.671	12.671	2	0.00011813	5830	DP690-14	129.88	54.138			0.86527	0.97628	NaN	1	0	Median	327330000	176930000	150400000	2623	2454	2452	5281	12936;12937	12937		2	9606
DTAIYQKDEALHVK	2	0	Unmodified	1629.8362	0.83623572	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	1	9	0									1								12.712	12.712	3	0.00055592	5543	DP690-9	101.38	76.506			0.7648	0.89654	NaN	1	0	Median	27846000	14875000	12971000	2624	1048	2453	5282	12938;12939	12939		2	9606
DTASLSTTPSESPR	0	1	Unmodified	1447.6791	0.67906638	2191	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	yes	yes	0	0	0	3	0			1														12.73	12.73	2	2.0269E-14	5586	DP690-3	227.36	203.1			0.7255	0.81476	NaN	1	0	Median	33499000	18904000	14595000	2625	2191	2454	5283	12940;12941	12941		2	9606
DTCYSPKPSVYLSTPSSASK	2	0	Unmodified	2174.0201	0.02014968	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	1	11	0											1						14.925	14.925	3	0.00026628	9269	DP690-11	93.255	93.255			0.7236	0.83975	NaN	1	0	Median	74907000	44651000	30255000	2626	2501	2455	5284	12942;12943;12944	12942		3	9606
DTDIVDEAIYYFK	1	0	Unmodified	1590.7454	0.74535503	140	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	0	0	0	15.5	0.5															1	1	24.17	24.17	2	0.00013891	19051	DP690-16	158.79	93.97			0.80875	0.92065	12.715	2	0	Median	4990900	2568400	2422400	2627	140	2456	5285;5286	12945;12946;12947;12948;12949;12950;12951	12950		7	9606
DTDSEEEIREAFR	0	2	Unmodified	1595.7063	0.70634376	450	P0DP25;P0DP24;P0DP23			yes	no	0	0	1	16	0																1	16.494	16.494	2	0.0003796	10403	DP690-16	123.79	94.259			0.78978	0.83443	NaN	1	0	Median	10401000	5841100	4560000	2628	450	2457	5287	12952;12953	12952		2	9606
DTDSLQSQIEDVR	0	1	Unmodified	1504.7005	0.7005301	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								17.193	17.193	2	5.1998E-05	11386	DP690-9	149.94	81.051			0.5998	0.75078	NaN	1	0	Median	8621200	4963200	3658000	2629	2411	2458	5288	12954;12955;12956	12955		3	9606
DTEATSGEGASQSNNFR	0	1	Unmodified	1769.7452	0.74524846	1441	Q5T7W0	ZNF618	Zinc finger protein 618	yes	yes	0	0	0	11	0											1						11.96	11.96	2	3.4331000000000002E-34	4920	DP690-11	256.31	194.66			NaN	NaN	NaN	0	0	Median	0	0	0	2630	1441	2459	5289	12957	12957		1	9606
DTFLGPVLK	1	0	Unmodified	988.55933	0.55933258	2477	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	11	0											1						18.762	18.762	2	0.02	14748	DP690-11	79.469	43.283			0.82172	1.0012	NaN	1	0	Median	33934000	16352000	17582000	2631	2477	2460	5290	12958;12959;12960;12961	12959		4	9606
DTGIFLDLMHLK	1	0	Oxidation (M)	1417.7275	0.72753689	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	1	0	8	4				1								1					19.764	19.764	2	0.00013449	15538	DP690-12	125.75	95.492			0.86552	1.0093	NaN	1	0	Median	109960000	61240000	48721000	2632	479	2461	5291;5292	12962;12963;12964;12965;12966;12967;12968	12962	587	7	9606
DTGIFLDLMHLK	1	0	Unmodified	1401.7326	0.73262227	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	12	0												1					22.056	22.056	2	0.0021679	18407	DP690-12	93.096	73.105			0.87104	1.05	NaN	1	0	Median	16460000	8824700	7635400	2633	479	2461	5293	12969;12970;12971	12969		3	9606
DTGKTPVEPEVAIHR	1	1	Unmodified	1647.858	0.8580338	928	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	1	13.3	3.77								2								4	12.361	12.361	2;3;4	4.9775E-07	5116	DP690-16	181.75	161.52			0.74489	0.7923	10.547	5	0	Median	740290000	395200000	345090000	2634	928	2462	5294;5295;5296;5297;5298;5299	12972;12973;12974;12975;12976;12977;12978;12979;12980;12981;12982;12983;12984;12985	12973		14	9606
DTGNFVIGQILSDQSR	0	1	Unmodified	1748.8693	0.86932676	440	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	2	0		1															21.555	21.555	2	0.0010145	15257	DP690-2	93.823	71.041			0.98128	1.0036	NaN	1	0	Median	1366900	629070	737790	2635	440	2463	5300	12986;12987;12988;12989	12989		4	9606
DTGPEDSYSSSAIHR	0	1	Unmodified	1620.7016	0.70159273	1904	Q96NE9	FRMD6	FERM domain-containing protein 6	yes	yes	0	0	0	10.5	1.5									1			1					12.488	12.488	2	7.3627E-16	5477	DP690-12	231.92	196.69			0.84521	1.0371	20.865	2	0	Median	17864000	8526300	9337600	2636	1904	2464	5301;5302	12990;12991;12992;12993	12990		4	9606
DTHDQLSEPSEVR	0	1	Unmodified	1511.6852	0.68521439	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8	3.54		2							2	2	2						12.233	12.233	2;3	9.7189E-11	5461	DP690-10	218.55	184.02			0.82949	0.98514	8.0948	7	0	Median	1099800000	609400000	490430000	2637	1319	2465	5303;5304;5305;5306;5307;5308;5309;5310	12994;12995;12996;12997;12998;12999;13000;13001;13002;13003;13004;13005;13006;13007;13008;13009;13010;13011;13012;13013;13014;13015;13016;13017;13018;13019;13020;13021;13022;13023;13024;13025;13026	12996		33	9606
DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK	1	0	Unmodified	3932.7097	0.7096574	741	P43487	RANBP1	Ran-specific GTPase-activating protein	yes	yes	0	0	0	7	0							1										17.273	17.273	4	7.2019E-06	11210	DP690-7	68.412	68.412			0.65248	0.70497	NaN	1	0	Median	33109000	19133000	13976000	2638	741	2466	5311	13027;13028;13029	13029		3	9606
DTITPQQVFVK	1	0	Unmodified	1274.6871	0.68705229	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	12	0												1					16.912	16.912	2	0.00010015	11680	DP690-12	141.48	112.9			0.86441	1.0234	NaN	1	0	Median	80042000	45500000	34542000	2639	2280	2467	5312	13030;13031;13032;13033	13030		4	9606
DTIVLLCKPEPELNAAIPSANPAK	2	0	Unmodified	2560.3571	0.3570743	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	1	3	0			1														18.719	18.719	3	9.6927E-05	13524	DP690-3	117.01	102.23			0.52869	0.57171	NaN	1	0	Median	20447000	13924000	6522600	2640	1739	2468	5313	13034;13035	13035		2	9606
DTLDYSSNTMESALQYEK	1	0	Oxidation (M)	2109.9048	0.90484515	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	3	0			1														16.453	16.453	2	1.1962E-36	10545	DP690-3	286.53	268.2			0.82006	0.8741	NaN	1	0	Median	26672000	15789000	10884000	2641	797	2469	5314	13036;13037;13038;13039	13038	1206	4	9606
DTLLSPDSSFEYVPPKPK	2	0	Unmodified	2019.0201	0.020073325	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	1	10	0										1							17.62	17.62	3	0.035042	13325	DP690-10	70.783	46.73			NaN	NaN	NaN	0	0	Median	27124000	27124000	0	2642	311	2470	5315	13040	13040		1	9606
DTLLSVEIVHELKGEGK	2	0	Unmodified	1866.0098	0.0098429899	1644	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	1	11	0											1						18.762	18.762	3	0.0086344	14929	DP690-11	61.127	34.981			0.7277	0.84927	NaN	1	0	Median	63518000	38778000	24741000	2643	1644	2471	5316	13041	13041		1	9606
DTLLTLAGCTPYEVR	0	1	Unmodified	1707.8502	0.85017123	2097	Q9H1B7	IRF2BPL	Interferon regulatory factor 2-binding protein-like	yes	yes	0	0	0	11	0											1						20.411	20.411	2	0.026458	17129	DP690-11	99.671	61.99			NaN	NaN	NaN	0	0	Median	0	0	0	2644	2097	2472	5317	13042	13042		1	9606
DTLSNPQSPQPSPYNSPKPQHK	2	0	Unmodified	2446.1877	0.18770079	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	1	3	0			2														11.441	11.441	3;4	8.9203E-05	3979	DP690-3	114.9	100.44			0.64331	0.69929	0.31989	2	0	Median	24067000	13781000	10285000	2645	1911	2473	5318;5319	13043;13044;13045;13046;13047;13048;13049;13050;13051;13052	13048		10	9606
DTLVADNLDQATR	0	1	Unmodified	1430.7001	0.70013617	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	10	0										1							16.19	16.19	2	0.0021413	11326	DP690-10	117.14	76.421			0.73926	0.91237	NaN	1	0	Median	127380000	70391000	56992000	2646	2215	2474	5320	13053	13053		1	9606
DTLVQGLNEAGDDLEAVAK	1	0	Unmodified	1956.964	0.96401501	2519	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	13	0													1				21.915	21.915	2	0.0011072	17844	DP690-13	117.2	69.915			NaN	NaN	NaN	0	0	Median	3225800	0	3225800	2647	2519	2475	5321	13054;13055	13054		2	9606
DTMSDQALEALSASLGTR	0	1	Oxidation (M)	1880.8786	0.87857082	545	P20810	CAST	Calpastatin	yes	yes	0	1	0	3.33	0.471			2	1													21.366	21.366	2	0.0010864	16765	DP690-3	120.29	81.653			0.90944	0.99767	NaN	1	0	Median	2409900	2068400	341570	2648	545	2476	5322;5323;5324	13056;13057;13058;13059;13060	13056	699	5	9606
DTNDYFNQAK	1	0	Unmodified	1214.5204	0.52038089	1513	Q6YHU6	THADA	Thyroid adenoma-associated protein	yes	yes	0	0	0	2	0		1															14.257	14.257	2	0.0071173	6824	DP690-2	87.696	72.832			1.4544	1.4551	NaN	1	0	Median	4276000	1157800	3118200	2649	1513	2477	5325	13061	13061		1	9606
DTNGENIAESLVAEGLATR	0	1	Unmodified	1958.9545	0.95451296	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	11	0											2						22.481	22.481	2	3.5641E-20	19829	DP690-11	206.67	142.36			NaN	NaN	NaN	0	0	Median	9479700	0	9479700	2650	1524	2478	5326;5327	13062;13063;13064	13062		3	9606
DTNMGAWFEAQVVR	0	1	Unmodified	1622.7511	0.75112588	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	11	0											1						21.516	21.516	2	1.7105E-09	18626	DP690-11	208.17	135.33			0.69437	0.82794	NaN	1	0	Median	40789000	20156000	20633000	2651	1932	2479	5328	13065;13066;13067;13068	13065		4	9606
DTNMGAWFEAQVVR	0	1	Oxidation (M)	1638.746	0.7460405	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	1	0	11	0											1						19.148	19.148	2	0.020912	15347	DP690-11	91.123	55.123			NaN	NaN	NaN	0	0	Median	18387000	18387000	0	2652	1932	2479	5329	13069	13069	2460	1	9606
DTPALFNFTTQELSSNPPLATILIPPHAR	0	1	Unmodified	3160.6557	0.65569917	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	9	4					1								1				24.185	24.185	3	8.1152E-06	20398	DP690-13	108.49	96.847			0.51221	0.62987	NaN	1	0	Median	19663000	14390000	5272800	2653	811	2480	5330;5331	13070;13071;13072;13073;13074;13075;13076;13077;13078;13079	13074		10	9606
DTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLK	1	0	2 Oxidation (M)	3884.8713	0.87132396	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	2	0	12	0												1					18.208	18.208	4	2.5781E-06	13477	DP690-12	61.438	61.438			0.64213	0.76933	NaN	1	0	Median	30990000	17492000	13498000	2654	1750	2481	5332	13080;13081	13080	2322;2323	2	9606
DTPGHGSGWAETPR	0	1	Unmodified	1466.6539	0.65385468	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	10	0										1							12.127	12.127	3	0.00057955	5379	DP690-10	92.457	74.121			0.65298	0.80476	NaN	1	0	Median	137900000	82950000	54951000	2655	263	2482	5333	13082;13083;13084	13083		3	9606
DTPLYTDNTANGIALLWAPR	0	1	Unmodified	2201.1117	0.1116823	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							23.129	23.129	2	1.0295E-11	20864	DP690-10	164.53	146.32			0.7384	0.90984	NaN	1	0	Median	5825900	3352400	2473500	2656	1492	2483	5334	13085	13085		1	9606
DTPQEMEQTR	0	1	Unmodified	1233.5296	0.52956537	1228	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	3	0			1														11.677	11.677	2	0.027893	4251	DP690-3	94.85	62.53			NaN	NaN	NaN	0	0	Median	6364100	0	6364100	2657	1228	2484	5335	13086	13086		1	9606
DTPRPDHPPHDGHSPASR	0	2	Unmodified	1974.9045	0.90448349	2069	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	0	0	1	10.5	0.5										1	1						10.123	10.123	4	0.01065	2412	DP690-10	56.424	47.381			0.50024	0.59581	NaN	1	0	Median	173320000	108530000	64782000	2658	2069	2485	5336;5337	13087;13088;13089;13090	13087		4	9606
DTPVELLAPLPPYFSR	0	1	Unmodified	1813.9614	0.96143623	1483	Q6P087	RPUSD3	RNA pseudouridylate synthase domain-containing protein 3	yes	yes	0	0	0	14	0														1			23.258	23.258	2	0.023451	19690	DP690-14	78.705	78.705			0.52758	0.65569	NaN	1	0	Median	8683000	6044900	2638100	2659	1483	2486	5338	13091	13091		1	9606
DTQDFIRDLEDPGIDPSVVK	1	1	Unmodified	2258.1067	0.1066565	1102	Q03001	DST	Dystonin	yes	yes	0	0	1	10	0										1							21.334	21.334	3	0.056262	18569	DP690-10	39.549	27.681			0.76017	0.89456	NaN	1	0	Median	13742000	8277600	5464500	2660	1102	2487	5339	13092	13092		1	9606
DTQEVPLEK	1	0	Unmodified	1057.5292	0.52915466	2053;2497	Q9BYJ9;Q7Z739;Q9Y5A9	YTHDF1;YTHDF3;YTHDF2	YTH domain-containing family protein 1;YTH domain-containing family protein 3;YTH domain-containing family protein 2	no	no	0	0	0	12	0												1					12.732	12.732	2	0.00064299	5720	DP690-12	144.12	93.995			0.78052	0.82523	NaN	1	0	Median	458080000	271360000	186720000	2661	2053;2497	2488	5340	13093;13094;13095;13096	13093		4	9606
DTQSGSLLFIGR	0	1	Unmodified	1292.6725	0.67246486	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	9.22	4.05					2	1	1	2					1		1	1	19.367	19.367	2	0.00017049	14541	DP690-13	167.09	127.78			0.88419	0.97263	17.489	5	0	Median	752620000	397050000	355570000	2662	819	2489	5341;5342;5343;5344;5345;5346;5347;5348;5349	13097;13098;13099;13100;13101;13102;13103;13104;13105;13106;13107;13108;13109;13110;13111;13112	13097		16	9606
DTQSPSTCSEGLLGWSQK	1	0	Unmodified	1979.8895	0.88946986	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	16	0																1	15.546	15.546	3	0.050712	9235	DP690-16	29.973	12.508			0.80405	0.89779	NaN	1	0	Median	66953000	37098000	29855000	2663	2065	2490	5350	13113	13113		1	9606
DTQTSITDSCAVYR	0	1	Unmodified	1615.7148	0.71479996	2502	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	15	0															1		14.796	14.796	2	5.0166E-15	8481	DP690-15	240	196.49			0.85161	0.95241	NaN	1	0	Median	73123000	42031000	31092000	2664	2502	2491	5351	13114;13115;13116;13117	13116		4	9606
DTSASAVAVGLK	1	0	Unmodified	1117.5979	0.59790293	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	3	0			1														14.675	14.675	2	0.0081127	8242	DP690-3	77.662	77.662			1.032	1.1015	NaN	1	0	Median	13373000	6734300	6638500	2665	713	2492	5352	13118	13118		1	9606
DTSATSQSVNGSPQAEQPSLESTSK	1	0	Unmodified	2535.1572	0.1572481	1582	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	12	0												1					13.695	13.695	2	1.2240000000000001E-45	7164	DP690-12	244.54	232.34			0.58531	0.70691	NaN	1	0	Median	15086000	7509700	7576500	2666	1582	2493	5353	13119;13120;13121;13122;13123;13124	13120		6	9606
DTSEDIEELVEPVAAHGPK	1	0	Unmodified	2034.9746	0.9745797	1935	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	3	0			1														19.569	19.569	3	0.00014738	14554	DP690-3	102.58	90.611			0.88933	0.94798	NaN	1	0	Median	12806000	6516400	6289700	2667	1935	2494	5354	13125;13126;13127	13126		3	9606
DTSFEQHVLWHTGGK	1	0	Unmodified	1740.822	0.82198264	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		3															15.189	15.189	3;4	4.9839E-06	7947	DP690-2	148.41	148.41			0.9173	0.92876	6.4584	2	0	Median	90251000	48056000	42195000	2668	789	2495	5355;5356;5357	13128;13129;13130;13131	13130		4	9606
DTSFLGSDDIGNIDVREPELEDLTR	0	2	Unmodified	2805.3305	0.33046144	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	1	9	0									1								21.392	21.392	3	4.2555E-07	16537	DP690-9	139.44	124.35			0.51973	0.56337	NaN	1	0	Median	12253000	7643800	4608800	2669	808	2496	5358	13132;13133	13132		2	9606
DTSNDPGQLLR	0	1	Unmodified	1214.5891	0.58912916	1827	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	yes	yes	0	0	0	6	0						1											15.343	15.343	2	0.00023166	8539	DP690-6	122.13	90.2			0.91647	1.0425	NaN	1	0	Median	16005000	9233100	6772000	2670	1827	2497	5359	13134;13135;13136;13137	13134		4	9606
DTSVEGSEMVPGK	1	0	Oxidation (M)	1350.5973	0.59731058	531	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	1	0	13	0													1				12.021	12.021	2	0.033477	4696	DP690-13	91.469	53.913			NaN	NaN	NaN	0	0	Median	0	0	0	2671	531	2498	5360	13138	13138	683	1	9606
DTTALSFFHMLNGAALR	0	1	Unmodified	1863.9302	0.93015288	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10.5	0.5										1	1						22.425	22.425	3	0.0043165	20021	DP690-10	68.257	68.257			1.013	1.2654	NaN	1	0	Median	21684000	13339000	8344900	2672	732	2499	5361;5362	13139;13140;13141;13142	13139		4	9606
DTTSDKDDSLGSQQTNEQCAQK	2	0	Unmodified	2455.0405	0.040503784	570	P23497	SP100	Nuclear autoantigen Sp-100	yes	yes	0	0	1	12	0												1					10.62	10.62	3	2.6381E-05	3037	DP690-12	123.83	116.64			0.94215	1.0897	NaN	1	0	Median	41106000	21901000	19205000	2673	570	2500	5363	13143;13144	13143		2	9606
DTVEVALEDKGDSTFR	1	1	Unmodified	1780.8479	0.84792262	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	8.4	3.26		1							1	2	1						16.307	16.307	2	3.0547000000000002E-33	11366	DP690-10	260.57	164.96			0.99894	1.1219	11.245	3	0	Median	238240000	106040000	132200000	2674	1270	2501	5364;5365;5366;5367;5368	13145;13146;13147;13148;13149;13150;13151;13152;13153;13154;13155;13156;13157;13158;13159;13160	13148		16	9606
DTVTISGPQAPVFEFVEQLRK	1	1	Unmodified	2360.2376	0.23761109	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2.5	0.5		1	1														22.613	22.613	3	1.9414E-15	16217	DP690-2	171.35	133.47			0.69567	0.7269	0.67543	2	0	Median	19898000	11334000	8564000	2675	789	2502	5369;5370	13161;13162;13163;13164;13165;13166;13167;13168;13169;13170	13161		10	9606
DTYGVRPLFK	1	1	Unmodified	1194.6397	0.63970816	418	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	1	4	0				1													15.473	15.473	2	0.0095101	9181	DP690-4	99.136	72.693			2.6546	3.0276	NaN	1	0	Median	30001000	9163100	20838000	2676	418	2503	5371	13171;13172	13171		2	9606
DTYLSHFNPR	0	1	Unmodified	1248.5887	0.58873523	703	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	0	0	7	0							1										15.02	15.02	2	5.2612E-05	8248	DP690-7	172.25	151.96			0.81219	0.8843	NaN	1	0	Median	75956000	33042000	42914000	2677	703	2504	5372	13173;13174;13175;13176	13173		4	9606
DVACGANHTLVLDSQK	1	0	Unmodified	1726.8308	0.83083277	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	13	1.58										1		2	2	1	2		13.611	13.611	2;3	1.2331E-48	6971	DP690-12	351.61	247.39			0.86687	0.89864	10.736	7	0	Median	3544199999.9999995	1862499999.9999998	1681699999.9999998	2678	2298	2505	5373;5374;5375;5376;5377;5378;5379;5380	13177;13178;13179;13180;13181;13182;13183;13184;13185;13186;13187;13188;13189;13190;13191;13192;13193;13194;13195	13184		18	9606
DVACGANHTLVLDSQKR	1	1	Unmodified	1882.9319	0.93194379	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	1	10.3	3.43				1	2				1	1	1	4	1	1	1		12.417	12.417	2;3;4	4.1374E-19	5305	DP690-12	228.9	228.9			0.90604	1.0297	7.3279	9	0	Median	2847200000	1487399999.9999998	1359700000	2679	2298	2506	5381;5382;5383;5384;5385;5386;5387;5388;5389;5390;5391;5392;5393	13196;13197;13198;13199;13200;13201;13202;13203;13204;13205;13206;13207;13208;13209;13210;13211;13212;13213;13214;13215;13216;13217;13218;13219;13220;13221	13201		26	9606
DVAEAKPELSLLGDGDH	1	0	Unmodified	1764.853	0.853008	1381	Q2TAA2	IAH1	Isoamyl acetate-hydrolyzing esterase 1 homolog	yes	yes	0	0	1	7	0							1										17.554	17.554	3	2.1099E-12	11498	DP690-7	172.09	117.69			NaN	NaN	NaN	0	0	Median	48710000	48710000	0	2680	1381	2507	5394	13222;13223	13222		2	9606
DVAECGPQQELDLNSPR	0	1	Unmodified	1926.8742	0.87415414	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	4	0				2													16.546	16.546	2	3.7628E-08	10610	DP690-4	172.99	139.23			NaN	NaN	NaN	0	0	Median	1918600	1918600	0	2681	2000	2508	5395;5396	13224;13225;13226	13224		3	9606
DVAENAGLFIDFVQR	0	1	Unmodified	1692.8471	0.84713476	1541	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	10	0										1							22.913	22.913	2	0.021159	20588	DP690-10	133.05	59.164			NaN	NaN	NaN	0	0	Median	0	0	0	2682	1541	2509	5397	13227	13227		1	9606
DVAEVDTVR	0	1	Unmodified	1002.4982	0.49818889	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								13.005	13.005	2	0.0011681	5797	DP690-9	124.08	83.977			0.76483	0.88576	NaN	1	0	Median	66940000	36957000	29983000	2683	1319	2510	5398	13228;13229;13230;13231;13232	13231		5	9606
DVAEVDTVRR	0	2	Unmodified	1158.5993	0.59929991	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.4	4.22		1							1	1	1				1		11.279	11.279	2	9.639E-05	3648	DP690-9	172.21	99.983			0.84183	0.99713	8.0993	4	0	Linear	537880000	286300000	251580000	2684	1319	2511	5399;5400;5401;5402;5403	13233;13234;13235;13236;13237;13238;13239;13240;13241;13242;13243;13244;13245;13246;13247	13245		15	9606
DVAIKEPLVDVVDPK	2	0	Unmodified	1635.9083	0.90833803	1962	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	1	10	4						1								1			17.737	17.737	2	0.00026291	11343	DP690-6	124.38	101.14			1.24	1.3361	61.587	2	0	Median	34006000	19543000	14462000	2685	1962	2512	5404;5405	13248;13249;13250;13251;13252;13253	13250		6	9606
DVALLQGR	0	1	Unmodified	870.49232	0.49231565	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	4	0				1													15.169	15.169	2	0.04834	8769	DP690-4	97.602	34.296			NaN	NaN	NaN	0	0	Median	32083000	32083000	0	2686	2405	2513	5406	13254	13254		1	9606
DVASAAPEKAENPAGHGSK	2	0	Unmodified	1834.881	0.88095408	2446	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	1	14	0														1			10.278	10.278	3	0.0067295	2531	DP690-14	58.997	41.297			0.63724	0.7125	NaN	1	0	Median	10795000	6912200	3882800	2687	2446	2514	5407	13255	13255		1	9606
DVAWAPSIGLPTSTIASCSQDGR	0	1	Unmodified	2388.138	0.1379734	898	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	14	0														2			21.002	21.002	2	1.1224E-23	16920	DP690-14	199.84	160.68			0.75557	0.92967	NaN	1	0	Median	13727000	8496500	5230700	2688	898	2515	5408;5409	13256;13257;13258;13259;13260	13258		5	9606
DVDCVLTTGEVFR	0	1	Unmodified	1509.7133	0.71334339	2126	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	4	0				1													19.481	19.481	2	0.0017505	14149	DP690-4	94.363	62.033			0.84762	0.98735	NaN	1	0	Median	11293000	6342000	4951300	2689	2126	2516	5410	13261	13261		1	9606
DVDDDGEEKELMER	1	1	Unmodified	1678.6992	0.69920947	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	1	11	0											1						14.635	14.635	3	0.013213	8873	DP690-11	63.128	63.128			0.54783	0.67121	NaN	1	0	Median	51188000	32230000	18958000	2690	1687	2517	5411	13262	13262		1	9606
DVDDFFEHER	0	1	Unmodified	1307.5418	0.54184461	2406	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	5	0					1												16.91	16.91	2	0.0020205	10558	DP690-5	102.07	82.964			0.52239	0.54838	NaN	1	0	Median	25221000	15599000	9622100	2691	2406	2518	5412	13263	13263		1	9606
DVDEAYMNKVELESR	1	1	Oxidation (M)	1812.82	0.81999331	38	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	1	1	13	0													1				14.236	14.236	3	0.0013788	7656	DP690-13	82.483	66.85		+	0.879	1.0348	NaN	1	0	Median	53361000	27861000	25500000	2692	38	2519	5413	13264;13265	13265	38	2	9606
DVDEAYMNKVELESR	1	1	Unmodified	1796.8251	0.82507869	38	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	13	0													2				16.074	16.074	2;3	8.9581E-05	10289	DP690-13	143.86	120.62		+	1.035	1.2555	7.9527	2	0	Median	46657000	25198000	21459000	2693	38	2519	5414;5415	13266;13267	13266		1	9606
DVDETGITVASLER	0	1	Unmodified	1503.7417	0.74166663	1732	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	12	0												2					18.309	18.309	2	6.8352E-35	13592	DP690-12	240	191.21			NaN	NaN	NaN	0	0	Median	133690000	70681000	63011000	2694	1732	2520	5416;5417	13268;13269;13270;13271	13268		4	9606
DVDFELIKVEGK	2	0	Unmodified	1390.7344	0.73439641	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	8	4				1								1					18.059	18.059	2	8.6488E-05	12452	DP690-4	189.58	143.9			1.2507	1.367	39.176	2	0	Median	73512000	32489000	41023000	2695	779	2521	5418;5419	13272;13273;13274;13275;13276	13276		5	9606
DVDFMYVELIQR	0	1	Oxidation (M)	1542.7388	0.73882986	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.6	0.49									2	3							21.531	21.531	2	4.6138E-05	15965	DP690-9	187.99	143.67			0.91837	1.0967	22.507	3	0	Plateau	146010000	69573000	76436000	2696	1046	2522	5420;5421;5422;5423;5424	13277;13278;13279;13280;13281;13282;13283;13284;13285;13286;13287;13288	13281	1593	12	9606
DVDFMYVELIQR	0	1	Unmodified	1526.7439	0.74391524	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							22.678	22.678	2	0.00010589	17961	DP690-9	183.72	145.42			0.77199	0.96308	4.8788	2	0	Median	43197000	23422000	19775000	2697	1046	2522	5425;5426	13289;13290;13291;13292;13293	13293		5	9606
DVDGAYMTK	1	0	Unmodified	998.4379	0.43789681	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	8.5	0.5								1	1								12.746	12.746	2	0.0077049	5557	DP690-9	118.5	69.072		+	NaN	NaN	NaN	0	0	Median	31681000	31681000	0	2698	369	2523	5427;5428	13294;13295;13296;13297;13298	13297		5	9606
DVDIIDHHDNTYTVK	1	0	Unmodified	1783.8377	0.83769228	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8.89	3.6		1	1						1	3	1	1	1				16.449	16.449	2;3	1.6856E-31	8231	DP690-10	289.86	212.8			0.88943	0.97924	15.991	9	0	Median	10675000000	5693100000	4981900000	2699	549	2524	5429;5430;5431;5432;5433;5434;5435;5436;5437	13299;13300;13301;13302;13303;13304;13305;13306;13307;13308;13309;13310;13311;13312;13313;13314;13315;13316;13317;13318;13319;13320;13321;13322;13323;13324;13325;13326;13327;13328;13329;13330	13304		32	9606
DVDLEFLAK	1	0	Unmodified	1048.5441	0.54407645	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	7	4			1								1						19.93	19.93	2	0.017042	15085	DP690-3	82.452	31.386			1.2758	1.4643	2.0189	2	0	Median	29726000	11939000	17787000	2700	893	2525	5438;5439	13331;13332;13333;13334;13335;13336;13337;13338	13337		8	9606
DVDNAYMIK	1	0	Unmodified	1067.4957	0.49574604	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1																15.329	15.329	2	0.042375	6926	DP690-1	98.299	53.852		+	NaN	NaN	NaN	0	0	Median	0	0	0	2701	44	2526	5440	13339	13339		1	9606
DVDPSLSSATAGGSFQDTEK	1	0	Unmodified	2010.9018	0.90180868	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	9.67	0.471									1	2							16.445	16.445	2	2.5768E-30	11660	DP690-10	236.4	216.3			0.92562	1.1379	NaN	1	0	Median	50620000	27519000	23101000	2702	1602	2527	5441;5442;5443	13340;13341;13342;13343;13344;13345	13342		6	9606
DVEDEILWVGER	0	1	Unmodified	1458.6991	0.69907354	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										2							21.461	21.461	2	0.00032203	18755	DP690-10	151.22	115.8			0.59015	0.73757	NaN	1	0	Median	31836000	17745000	14092000	2703	1080	2528	5444;5445	13346;13347	13346		2	9606
DVEDFLSPLLGK	1	0	Unmodified	1331.6973	0.69728262	1202	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	yes	yes	0	0	0	16	0																1	24.003	24.003	2	0.0004081	18915	DP690-16	114.97	87.639			0.71054	0.83079	NaN	1	0	Median	6060900	3548600	2512300	2704	1202	2529	5446	13348;13349;13350;13351;13352;13353;13354;13355	13351		8	9606
DVEGSTSPQIGDKVEFSISDK	2	0	Unmodified	2237.0699	0.069936644	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	1	11	0											1						17.016	17.016	3	0.00084142	12345	DP690-11	86.189	86.189			0.94113	1.1002	NaN	1	0	Median	60486000	36011000	24475000	2705	264	2530	5447	13356;13357	13357		2	9606
DVEVTKEEFAQSAIR	1	1	Unmodified	1720.8632	0.86317875	274	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	1	12	0												2					15.353	15.353	2;3	0.00022121	9549	DP690-12	106.3	85.643			0.74221	0.89881	NaN	1	0	Median	78470000	38056000	40414000	2706	274	2531	5448;5449	13358;13359;13360	13358		3	9606
DVEVTKEEFVLAAQK	2	0	Unmodified	1704.8934	0.89341625	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	1	12	0												2					16.681	16.681	2;3	1.6975999999999998E-19	11360	DP690-12	267.37	203.26			0.8966	1.006	4.8904	2	0	Median	321860000	167080000	154780000	2707	2359	2532	5450;5451	13361;13362;13363;13364;13365;13366;13367	13364		7	9606
DVEVVRPLEK	1	1	Unmodified	1182.6608	0.66083754	781	P48681	NES	Nestin	yes	yes	0	0	1	10	0										1							13.475	13.475	2	0.0066435	7303	DP690-10	104.01	104.01			0.69453	0.84218	NaN	1	0	Median	133920000	75389000	58534000	2708	781	2533	5452	13368;13369	13368		2	9606
DVFFYQADDEHYIPR	0	1	Unmodified	1913.8584	0.85842773	567	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	13	0													1				18.581	18.581	3	0.058246	13699	DP690-13	71.513	53.968			0.79183	0.94361	NaN	1	0	Median	103050000	59041000	44007000	2709	567	2534	5453	13370	13370		0	9606
DVFGSNSNPYMGTR	0	1	Oxidation (M)	1559.6675	0.66745583	2217	Q9NU22	MDN1	Midasin	yes	yes	0	1	0	9	0									1								15.357	15.357	2	0.070894	8976	DP690-9	81.525	58.963			NaN	NaN	NaN	0	0	Median	0	0	0	2710	2217	2535	5454	13371	13371		1	9606
DVFGSNSNPYMGTR	0	1	Unmodified	1543.6725	0.67254121	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								16.932	16.932	2	0.017879	11038	DP690-9	103.08	64.78			NaN	NaN	NaN	0	0	Median	0	0	0	2711	2217	2535	5455	13372	13372		1	9606
DVFHTTVNFINQNLR	0	1	Unmodified	1816.922	0.92203104	903	P55957	BID	BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11	yes	yes	0	0	0	8	0								1									21.592	21.592	3	0.00032326	15343	DP690-8	89.992	72.289			0.94876	1.1458	NaN	1	0	Median	2137400	1001200	1136200	2712	903	2536	5456	13373;13374;13375;13376	13374		4	9606
DVFQLKDLEK	2	0	Unmodified	1233.6605	0.66050319	2031	Q9BWT6	MND1	Meiotic nuclear division protein 1 homolog	yes	yes	0	0	1	12	4								1								1	16.282	16.282	3	3.5774E-05	10113	DP690-16	142.98	11.465			0.90499	1.0127	6.9707	2	0	Median	704780000	373830000	330950000	2713	2031	2537	5457;5458	13377;13378;13379;13380	13378		4	9606
DVFRDPALK	1	1	Unmodified	1059.5713	0.57129425	950	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	1	12	4								1								1	14.076	14.076	2	0.0175	7028	DP690-8	101.64	59.991			0.91888	1.0189	28.27	2	0	Median	114590000	63312000	51275000	2714	950	2538	5459;5460	13381;13382;13383	13383		3	9606
DVFRDPALKR	1	2	Unmodified	1215.6724	0.67240528	950	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	2	13.3	3.77								1								2	12.379	12.379	3	0.014858	5118	DP690-16	71.221	31.22			0.94637	0.9792	3.8883	2	0	Median	133070000	67227000	65843000	2715	950	2539	5461;5462;5463	13384;13385;13386;13387;13388	13384		5	9606
DVIATDKEDVAFK	2	0	Unmodified	1449.7351	0.73512469	710	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	1	6	0						1											14.537	14.537	2	0.00020949	7624	DP690-6	131.43	104.68			0.84213	0.87057	NaN	1	0	Median	5276700	2954900	2321800	2716	710	2540	5464	13389;13390	13390		2	9606
DVIDGGDQYRK	1	1	Unmodified	1264.6048	0.60477922	136	O15091	KIAA0391	Mitochondrial ribonuclease P protein 3	yes	yes	0	0	1	12	0												1					11.446	11.446	2	0.043689	4132	DP690-12	72.607	46.986			2.2095	2.8494	NaN	1	0	Median	25203000	9905800	15297000	2717	136	2541	5465	13391	13391		1	9606
DVIEEHGPSEK	1	0	Unmodified	1238.5779	0.57789577	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	11	0											1						10.738	10.738	2	0.00015685	3165	DP690-11	169.41	111.18			1.0006	1.2108	NaN	1	0	Median	44686000	23519000	21167000	2718	829	2542	5466	13392;13393;13394;13395;13396	13393		5	9606
DVIEEYFK	1	0	Unmodified	1041.5019	0.50187728	582	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	8	0								1									19.231	19.231	2	0.054193	12792	DP690-8	113.41	82.799			1.1777	1.3189	NaN	1	0	Median	13512000	6196000	7315500	2719	582	2543	5467	13397	13397		0	9606
DVIELTDDSFDK	1	0	Unmodified	1395.6406	0.64055561	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	13	0													1				19.013	19.013	2	0.0019414	14221	DP690-13	95.483	76.703			0.9652	1.1213	NaN	1	0	Median	33194000	20823000	12371000	2720	1318	2544	5468	13398;13399	13398		2	9606
DVIKEIEDFDSLEALR	1	1	Unmodified	1890.9575	0.95747307	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	1	12	0												1					22.784	22.784	3	1.6426E-06	19204	DP690-12	136.34	118.18			0.87301	1.0672	NaN	1	0	Median	6422800	3453900	2968900	2721	750	2545	5469	13400;13401;13402;13403	13402		4	9606
DVKPDNFLMGLGK	2	0	Oxidation (M)	1448.7334	0.73335055	783;798	P49674;P48730	CSNK1E;CSNK1D	Casein kinase I isoform epsilon;Casein kinase I isoform delta	no	no	0	1	1	13	0													2				17.822	17.822	2;3	0.0027672	12595	DP690-13	77.644	36.48			0.719	0.80475	14.312	2	0	Median	157790000	90515000	67274000	2722	798;783	2546	5470;5471	13404;13405;13406;13407;13408	13408	1162	5	9606
DVKPENLLYTSK	2	0	Unmodified	1405.7453	0.74529545	787	Q16644;P49137	MAPKAPK3;MAPKAPK2	MAP kinase-activated protein kinase 3;MAP kinase-activated protein kinase 2	yes	no	0	0	1	6	0						1											15.194	15.194	2	0.0038574	8412	DP690-6	105.4	75.079			0.78419	0.81067	NaN	1	0	Median	11334000	5767200	5566800	2723	787	2547	5472	13409;13410;13411;13412	13411		4	9606
DVKPSNVLINK	2	0	Unmodified	1225.703	0.7030367	755	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	0	1	6	0						1											12.962	12.962	2	0.00093621	5620	DP690-6	151.83	104.6			0.87192	0.90137	NaN	1	0	Median	24295000	12426000	11869000	2724	755	2548	5473	13413;13414;13415	13414		3	9606
DVLEGYNGTIFAYGQTSSGK	1	0	Unmodified	2105.9906	0.99056411	648	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	3	0			1														20.166	20.166	2	0.067694	15332	DP690-3	81.619	50.761			NaN	NaN	NaN	0	0	Median	0	0	0	2725	648	2549	5474	13416	13416		1	9606
DVLIQGLIDENPGLQLIIR	0	1	Unmodified	2118.2049	0.2048544	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									2								25.709	25.709	2	1.0096000000000001E-29	21067	DP690-9	234.04	217.69			0.70108	0.85396	17.597	2	0	Median	17550000	9704700	7845200	2726	1046	2550	5475;5476	13417;13418;13419;13420;13421;13422;13423	13421		7	9606
DVLKEEGVSFLINTFEGGGCGQPSGILAQPTLLYLR	1	1	Unmodified	3877.9924	0.99242537	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.33	0.471									2	1							25.531	25.531	3	4.7275E-13	21030	DP690-9	118.83	118.83			0.63638	0.72856	23.169	3	0	Plateau	19622000	10974000	8648200	2727	1046	2551	5477;5478;5479	13424;13425;13426;13427;13428;13429;13430;13431;13432;13433;13434;13435;13436;13437;13438;13439	13432		16	9606
DVLLQVDDERR	0	2	Unmodified	1356.6997	0.69974224	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		2															14.641	14.641	2;3	3.0781E-06	7241	DP690-2	204.07	166.73			1.0088	1.0076	12.168	2	0	Median	49546000	22130000	27416000	2728	668	2552	5480;5481	13440;13441;13442;13443;13444	13440		5	9606
DVLLVAQGEMALEEFLK	1	0	Oxidation (M)	1919.9914	0.99141573	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	9	0									1								26.995	26.995	2	4.0326E-07	22436	DP690-9	153.81	127.83			0.92253	1.1555	NaN	1	0	Median	5514500	3047700	2466800	2729	1264	2553	5482	13445;13446;13447;13448;13449;13450;13451;13452	13449	1908	8	9606
DVLLVAQGEMALEEFLK	1	0	Unmodified	1903.9965	0.99650111	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								27.237	27.237	2	3.8435E-06	22683	DP690-9	134.21	92.165			0.89393	1.0453	NaN	1	0	Median	1298800	664440	634320	2730	1264	2553	5483	13453;13454;13455;13456;13457;13458;13459;13460;13461	13458		9	9606
DVLNDTAPR	0	1	Unmodified	999.49852	0.49852324	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	8.33	3.77			1								2						13.196	13.196	2	0.00085616	6205	DP690-3	128.61	78.583			0.87396	0.99263	NaN	1	0	Median	27034000	13919000	13115000	2731	770	2554	5484;5485;5486	13462;13463;13464;13465;13466	13464		5	9606
DVLQPYVQESQNK	1	0	Unmodified	1546.7627	0.76273643	1455	Q658P3	STEAP3	Metalloreductase STEAP3	yes	yes	0	0	0	13	0													1				15.791	15.791	2	0.0017155	9917	DP690-13	94.767	76.631			0.55916	0.64765	NaN	1	0	Median	42451000	25006000	17445000	2732	1455	2555	5487	13467;13468	13468		2	9606
DVLSVAFSSDNR	0	1	Unmodified	1308.631	0.63099397	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	11	3.67						1			1					1	1		18.84	18.84	2	2.9904E-10	14043	DP690-14	240.47	208.71			0.82323	0.97105	10.923	4	0	Median	455540000	237280000	218260000	2733	1022	2556	5488;5489;5490;5491	13469;13470;13471;13472;13473;13474;13475;13476;13477;13478;13479;13480	13469		12	9606
DVLSYHIPFLVSSIEDFKDHIPR	1	1	Unmodified	2726.4068	0.40680169	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	1	11	0											1						22.766	22.766	4	1.4075E-10	20150	DP690-11	156.61	134.91			0.77482	0.97774	NaN	1	0	Median	32985000	19886000	13099000	2734	2437	2557	5492	13481;13482;13483;13484	13482		4	9606
DVLTAHPAAPGPVSR	0	1	Unmodified	1486.7892	0.78922595	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	9	0									1								13.333	13.333	2	0.00033125	6295	DP690-9	110.93	110.93			1.3118	1.6423	NaN	1	0	Median	4914400	2164100	2750300	2735	295	2558	5493	13485;13486	13485		2	9606
DVMQNHLLQMLCLVAMEKPASTNSDDVRDEK	2	1	3 Oxidation (M)	3634.6736	0.67355213	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	3	2	4	0				2													17.768	17.768	4;5	9.8859E-14	12142	DP690-4	154.71	146.7			0.80598	0.87448	1.384	2	0	Median	30637000	17806000	12832000	2736	469	2559	5494;5495	13487;13488;13489	13488	551;552;553	3	9606
DVNAAIAAIK	1	0	Unmodified	984.5604	0.56039521	1033	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	9	4					1								1				16.822	16.822	2	0.0045289	11338	DP690-13	91.318	57.396			0.92152	0.98975	5.2952	2	0	Median	99145000	51024000	48121000	2737	1033	2560	5496;5497	13490;13491;13492	13490		3	9606
DVNAAIATIK	1	0	Unmodified	1014.571	0.5709599	1032;1521;1977;452	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;Q9BQE3	TUBA3E;TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	8.92	4.68	1			1	1	2	1	1				1	1	1	1	1	15.908	15.908	1;2	0.00053976	9667	DP690-4	117.53	79.967			1.1056	1.1616	8.2078	12	0	Median	7332099999.999999	3610999999.9999995	3721099999.9999995	2738	452;1032;1521;1977	2561	5498;5499;5500;5501;5502;5503;5504;5505;5506;5507;5508;5509	13493;13494;13495;13496;13497;13498;13499;13500;13501;13502;13503;13504;13505;13506;13507;13508;13509;13510;13511;13512;13513;13514;13515;13516;13517;13518;13519;13520;13521;13522;13523;13524;13525;13526;13527;13528;13529	13513		36	9606
DVNALPETLSDALR	0	1	Unmodified	1512.7784	0.77838649	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								20.939	20.939	2	0.047572	16065	DP690-9	57.885	57.885			0.90409	1.1321	NaN	1	0	Median	8231600	4406100	3825500	2739	2217	2562	5510	13530	13530		1	9606
DVNGELIAVQR	0	1	Unmodified	1212.6463	0.64625011	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	10	0										2							16.191	16.191	2	0.018831	11249	DP690-10	99.653	55.206			NaN	NaN	NaN	0	0	Median	60837000	0	60837000	2740	1794	2563	5511;5512	13531;13532	13531		2	9606
DVNQQEFVR	0	1	Unmodified	1133.5465	0.54653606	697	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	13.3	3.77								1								2	13.668	13.668	2	0.00045949	6817	DP690-16	152.63	102.59			1.0006	1.0811	9.7864	3	0	Median	682870000	349950000	332920000	2741	697	2564	5513;5514;5515	13533;13534;13535;13536;13537;13538;13539;13540;13541;13542	13537		10	9606
DVNTDFLLILLK	1	0	Unmodified	1402.8072	0.80716742	1527	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	11	0											1						26.299	26.299	2	0.0026888	24295	DP690-11	91.584	54.89			0.91202	1.0674	NaN	1	0	Median	2329600	1252200	1077400	2742	1527	2565	5516	13543;13544	13544		2	9606
DVPAYSQDTFK	1	0	Unmodified	1269.5877	0.58773217	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	11.5	1.12									1			5					15.19	15.19	2	0.002732	9263	DP690-12	128.6	72.168			1.3345	1.701	NaN	1	0	Median	8775100	3843300	4931700	2743	375	2566	5517;5518;5519;5520;5521;5522	13545;13546;13547;13548;13549;13550	13545		6	9606
DVPGTLLNIALLNLGSSDPSLR	0	1	Unmodified	2264.2376	0.23761109	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	9.5	0.5									2	2							26.646	26.646	2	4.9974E-10	24816	DP690-10	156.72	138.32			0.65177	0.78377	17.067	4	0	Median	6971100	3894600	3076400	2744	550	2567	5523;5524;5525;5526	13551;13552;13553;13554;13555;13556;13557;13558;13559;13560;13561;13562;13563;13564;13565	13553		15	9606
DVPIDHSDLVADLLK	1	0	Unmodified	1648.8672	0.8672015	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	10	0										1							21.026	21.026	3	0.031971	18265	DP690-10	51.727	30.377			0.59951	0.73241	NaN	1	0	Median	25996000	14048000	11947000	2745	1546	2568	5527	13566	13566		1	9606
DVPLGTPLCIIVEK	1	0	Unmodified	1552.8535	0.85346569	457	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	12	0												1					21.415	21.415	2	0.0004131	17608	DP690-12	108.98	66.646			0.6274	0.75426	NaN	1	0	Median	19764000	12005000	7758400	2746	457	2569	5528	13567;13568;13569;13570	13567		4	9606
DVPLTAEEVEFVVEK	1	0	Unmodified	1702.8665	0.8665328	2234	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	10	0										1							21.454	21.454	2	0.003466	18689	DP690-10	94.122	94.122			0.63938	0.77612	NaN	1	0	Median	15964000	10813000	5151000	2747	2234	2570	5529	13571	13571		1	9606
DVPNPNQDDDDDEGFSFNPLK	1	0	Unmodified	2376.9982	0.99822826	1143	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	11	0											1						20.487	20.487	2	0.00046567	17319	DP690-11	101.75	101.75			0.64407	0.79503	NaN	1	0	Median	13504000	7683500	5820700	2748	1143	2571	5530	13572	13572		1	9606
DVPPLSETEATPVPIKDMEIAQTQK	2	0	Oxidation (M)	2752.3841	0.38407691	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	1	10	0										1							16.856	16.856	3	0.00026535	12105	DP690-10	93.388	80.099			0.55011	0.61689	NaN	1	0	Median	325820000	210300000	115520000	2749	604	2572	5531	13573;13574;13575	13574	833	3	9606
DVPPLSETEATPVPIKDMEIAQTQK	2	0	Unmodified	2736.3892	0.38916229	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	10.5	0.5										1	1						18.845	18.845	3	3.1111E-05	15062	DP690-10	122.65	101.73			0.6112	0.67176	NaN	1	0	Median	423930000	250150000	173770000	2750	604	2572	5532;5533	13576;13577;13578;13579;13580;13581;13582	13579		7	9606
DVPPSINTTNIDTLLVATDQTER	0	1	Unmodified	2512.2657	0.26567634	10	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	10	0										2							21.93	21.93	2	5.2946E-06	19353	DP690-10	128.45	94.401			0.8109	1.0172	NaN	1	0	Median	12630000	7036800	5592900	2751	10	2573	5534;5535	13583;13584;13585;13586	13584		4	9606
DVPVAEEVSALFAGELNPVAPK	1	0	Unmodified	2251.1736	0.17361385	108	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	10	0										3							25.954	25.954	2	7.7587E-10	24227	DP690-10	153.94	127.4			0.77697	0.93145	NaN	1	0	Median	5298500	2322600	2976000	2752	108	2574	5536;5537;5538	13587;13588;13589	13587		3	9606
DVQDSLTVSNEAQTAK	1	0	Unmodified	1704.8166	0.81662249	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	10.8	4.26						2		1						1	1	1	14.587	14.587	2	5.1194E-59	7559	DP690-6	351.81	291.41			0.88049	0.97277	14.354	5	0	Median	727990000	389760000	338230000	2753	864	2575	5539;5540;5541;5542;5543;5544	13590;13591;13592;13593;13594;13595;13596;13597;13598;13599;13600;13601;13602;13603;13604;13605;13606;13607	13602		18	9606
DVQEIFR	0	1	Unmodified	905.46068	0.46068117	63;1237	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	no	no	0	0	0	13	0													1				16.51	16.51	2	0.0087445	10775	DP690-13	128.82	48.876			NaN	NaN	NaN	0	0	Median	199830000	199830000	0	2754	63;1237	2576	5545	13608;13609	13609		2	9606
DVQELLTQYTK	1	0	Unmodified	1336.6874	0.68744622	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	13	0													1				19.993	19.993	2	1.5854E-05	15411	DP690-13	196.52	196.52			0.98946	1.1363	NaN	1	0	Median	91264000	52837000	38427000	2755	934	2577	5546	13610;13611;13612;13613;13614	13611		5	9606
DVQETLMPQVLTTLEEDSK	1	0	Oxidation (M)	2191.0566	0.056594765	1591	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	1	0	3	0			1														21.072	21.072	2	4.3807E-11	16453	DP690-3	167.69	138.9			0.8132	0.85042	NaN	1	0	Median	3354200	1779900	1574300	2756	1591	2578	5547	13615;13616	13616	2251	2	9606
DVQGTDASLDEELDRVK	1	1	Unmodified	1888.9014	0.90141475	2365	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	1	14	0														2			16.952	16.952	2;3	8.8224E-08	11634	DP690-14	177.36	154.58			0.71248	0.89802	NaN	1	0	Median	94527000	15880000	78646000	2757	2365	2579	5548;5549	13617;13618;13619	13618		3	9606
DVQIGDIVTVGECR	0	1	Unmodified	1559.7614	0.76135622	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	16	0																1	19.336	19.336	2	0.0010195	13901	DP690-16	100.55	47.624			0.66067	0.77109	NaN	1	0	Median	1877300	1099600	777800	2758	976	2580	5550	13620	13620		1	9606
DVQIGDIVTVGECRPLSK	1	1	Unmodified	1985.0252	0.025175478	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	15.3	0.471															2	1	18.32	18.32	2;3	2.361E-49	12667	DP690-16	321.78	276.95			0.83865	0.95365	2.8537	3	0	Plateau	86806000	45975000	40832000	2759	976	2581	5551;5552;5553	13621;13622;13623;13624;13625;13626;13627;13628;13629;13630	13630		10	9606
DVQTALALAK	1	0	Unmodified	1028.5866	0.58660996	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	15	0															1		16.741	16.741	2	0.016536	11084	DP690-15	75.378	35.377			0.82984	0.97946	NaN	1	0	Median	24832000	14079000	10753000	2760	1953	2582	5554	13631;13632	13631		2	9606
DVSALFPDVVNCMQTDNLELKK	2	0	Oxidation (M)	2551.2298	0.22982488	1152	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	1	1	11	0											1						21.696	21.696	3	0.0099412	18885	DP690-11	81.017	17.411			NaN	NaN	NaN	0	0	Median	8982400	8982400	0	2761	1152	2583	5555	13633	13633	1803	1	9606
DVSLGTYGSR	0	1	Unmodified	1053.5091	0.50908792	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	2	0		1															14.515	14.515	2	0.030262	7184	DP690-2	70.816	47.388			0.97944	1.0251	NaN	1	0	Median	6871700	3794100	3077600	2762	2065	2584	5556	13634	13634		1	9606
DVSLIEALPWEDENDQR	0	1	Unmodified	2027.9436	0.94361392	2568				yes	yes	0	0	0	5	0					1												24.16	24.16	2	0.00050453	19426	DP690-5	104.07	80.253	+		1.1169	1.1645	NaN	1	0	Median	7138300	3054700	4083600	2763	2568	2585	5557	13635;13636	13635		2	9606
DVSSVELLMNNHQGIK	1	0	Oxidation (M)	1798.8883	0.88834765	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										1							15.323	15.323	2	4.1967E-07	10026	DP690-10	169.82	169.82			0.98085	1.2005	NaN	1	0	Median	28471000	14433000	14038000	2764	1080	2586	5558	13637;13638;13639;13640;13641	13639	1690	5	9606
DVTEAEQAEEQAR	0	1	Unmodified	1474.6536	0.65357991	1157	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	11	0											1						13.349	13.349	2	0.0028013	6953	DP690-11	168.22	123.14			NaN	NaN	NaN	0	0	Median	0	0	0	2765	1157	2587	5559	13642	13642		1	9606
DVTLQGEHQHLPEPGCQQTVPLSVGR	0	1	Unmodified	2881.4141	0.41408869	1379	Q2M296	MTHFSD	Methenyltetrahydrofolate synthase domain-containing protein	yes	yes	0	0	0	13	0													1				15.823	15.823	4	0.0023593	9876	DP690-13	56.453	56.453			0.4258	0.52246	NaN	1	0	Median	29539000	17953000	11587000	2766	1379	2588	5560	13643;13644	13643		2	9606
DVTNNVHYENYR	0	1	Unmodified	1522.6801	0.68006943	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	13	0													2				12.969	12.969	2;3	3.3836E-10	5899	DP690-13	218.15	185.9			0.83791	0.96784	3.6314	2	0	Median	456750000	243110000	213640000	2767	1351	2589	5561;5562	13645;13646;13647;13648;13649;13650	13647		6	9606
DVTPPPETEVVLIK	1	0	Unmodified	1535.8447	0.84467514	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10	0										1							18.492	18.492	2	0.00069001	14640	DP690-10	105.13	105.13			0.56781	0.63917	NaN	1	0	Median	510970000	333950000	177020000	2768	604	2590	5563	13651;13652;13653;13654	13652		4	9606
DVVFNYLHATAFQGTPLAQAVEGPSENVR	0	1	Unmodified	3129.552	0.55196238	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	12.3	1.96					1						1	1	13				23.952	23.952	3	9.1505E-18	17995	DP690-13	162.81	162.81			0.67316	0.75695	9.1628	7	0	Median	1097400000	647300000	450060000	2769	637	2591	5564;5565;5566;5567;5568;5569;5570;5571;5572;5573;5574;5575;5576;5577;5578;5579	13655;13656;13657;13658;13659;13660;13661;13662;13663;13664;13665;13666;13667;13668;13669;13670;13671;13672;13673;13674;13675;13676;13677;13678;13679;13680;13681;13682;13683;13684;13685;13686;13687;13688;13689;13690;13691;13692;13693;13694;13695;13696;13697;13698;13699;13700	13661		46	9606
DVVFNYLHATAFQGTPLAQAVEGPSENVRK	1	1	Unmodified	3257.6469	0.64692539	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	1	13	0													1				20.812	20.812	4	0.0006534	16504	DP690-13	82.65	72.412			0.80619	0.96033	NaN	1	0	Median	44457000	24212000	20245000	2770	637	2592	5580	13701	13701		0	9606
DVVGNDVATILSR	0	1	Unmodified	1357.7201	0.72014333	2526	Q9Y6W5	WASF2	Wiskott-Aldrich syndrome protein family member 2	yes	yes	0	0	0	8	4				1								1					20.323	20.323	2	8.3106E-11	16269	DP690-12	213.63	165.19			0.8379	0.97267	6.418	2	0	Median	105680000	56243000	49442000	2771	2526	2593	5581;5582	13702;13703;13704;13705;13706;13707;13708;13709	13703		8	9606
DVVGRPIDPR	0	2	Unmodified	1122.6146	0.61455605	2413	Q9UPN6	SCAF8	Protein SCAF8	yes	yes	0	0	1	15	0															1		14.856	14.856	2	0.034415	8508	DP690-15	85.161	30.385			0.92067	0.99874	NaN	1	0	Median	176420000	94013000	82405000	2772	2413	2594	5583	13710	13710		1	9606
DVVICPDASLEDAK	1	0	Unmodified	1530.7236	0.72357373	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	7	0							1										17.126	17.126	2	0.069674	10993	DP690-7	55.452	31.466			0.66404	0.71553	NaN	1	0	Median	40595000	26109000	14486000	2773	1939	2595	5584	13711	13711		1	9606
DVVICPDASLEDAKK	2	0	Unmodified	1658.8185	0.81853675	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	1	7.4	0.49							3	2									15.065	15.065	2;3	1.0572E-06	8290	DP690-7	190.53	190.53			0.76854	0.84642	7.0405	4	0	Median	879880000	491300000	388580000	2774	1939	2596	5585;5586;5587;5588;5589	13712;13713;13714;13715;13716;13717;13718;13719;13720;13721;13722;13723;13724;13725;13726;13727;13728;13729;13730;13731	13715		20	9606
DVYIVQDLMETDLYK	1	0	Oxidation (M)	1859.8863	0.88628196	610;600	P27361;P28482	MAPK3;MAPK1	Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 1	no	no	0	1	0	6	0						1											21.056	21.056	2	3.6504E-05	15239	DP690-6	142.19	112.95			0.8306	0.94299	NaN	1	0	Median	6605800	3903600	2702200	2775	600;610	2597	5590	13732;13733;13734;13735;13736;13737;13738	13734	802;847	7	9606
DVYKEHFQDDVFNEK	2	0	Unmodified	1911.8639	0.86390703	742	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	1	4	0				1													15.184	15.184	3	1.9531E-07	8860	DP690-4	167.69	114.72			NaN	NaN	NaN	0	0	Median	8896200	0	8896200	2776	742	2598	5591	13739;13740;13741	13741		3	9606
DVYVPNTTYR	0	1	Unmodified	1226.5932	0.5931519	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										1							14.98	14.98	2	0.024776	9491	DP690-10	96.668	56.316			NaN	NaN	NaN	0	0	Median	0	0	0	2777	1901	2599	5592	13742	13742		1	9606
DVYVQLYLQHLTAR	0	1	Unmodified	1717.9152	0.91515474	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	11	0											1						20.026	20.026	3	0.073947	16694	DP690-11	58.817	32.705			NaN	NaN	NaN	0	0	Median	10426000	0	10426000	2778	723	2600	5593	13743	13743		1	9606
DWDEIRGDNVK	1	1	Unmodified	1345.6262	0.62624295	412	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	0	1	12	0												1					14.33	14.33	2	0.00029058	8063	DP690-12	151.22	94.3			0.9105	1.131	NaN	1	0	Median	48048000	25601000	22447000	2779	412	2601	5594	13744;13745;13746	13744		3	9606
DWEQFHQPR	0	1	Unmodified	1241.5578	0.55776945	2130	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	0	8	0								1									13.971	13.971	2	0.003335	6965	DP690-8	137.9	65.025			NaN	NaN	NaN	0	0	Median	2012300	2012300	0	2780	2130	2602	5595	13747;13748	13748		2	9606
DWNTLIVGK	1	0	Unmodified	1044.5604	0.56039521	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	4	0				1													19.159	19.159	2	0.012214	13820	DP690-4	87.323	52.515			3.4412	3.7609	NaN	1	0	Median	17980000	4326900	13653000	2781	111	2603	5596	13749	13749		1	9606
DWSPTLYIR	0	1	Unmodified	1149.5819	0.58185893	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	11.5	0.5											1	1					19.591	19.591	2	0.0071102	16062	DP690-11	92.47	60.6			0.73948	0.89017	17.506	2	0	Median	62155000	36414000	25742000	2782	737	2604	5597;5598	13750;13751;13752;13753	13751		4	9606
DWVLNEFK	1	0	Unmodified	1049.5182	0.51819605	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	12	0												2					20.052	20.052	2	0.04971	15982	DP690-12	117.4	73.004			0.82855	0.90623	3.0698	2	0	Median	627920000	339020000	288900000	2783	517	2605	5599;5600	13754;13755	13755		0	9606
DWVLNEFR	0	1	Unmodified	1077.5243	0.52434406	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11.5	0.5											1	1					20.315	20.315	2	0.047688	16219	DP690-12	134.06	101.22			0.85173	1.0037	3.1716	2	0	Median	192520000	102450000	90065000	2784	1793	2606	5601;5602	13756;13757	13757		0	9606
DYALHWLVLGTHTSDEQNHLVVAR	0	1	Unmodified	2773.3936	0.39361124	1360	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	13	0													1				18.592	18.592	4	0.043754	13544	DP690-13	44.963	44.963			0.98061	1.2056	NaN	1	0	Median	25923000	10566000	15357000	2785	1360	2607	5603	13758	13758		0	9606
DYDDMSPR	0	1	Unmodified	997.38111	0.38111022	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	12	0												1					13.052	13.052	2	0.066621	6176	DP690-12	108.09	69.281			0.76825	0.83628	NaN	1	0	Median	407360000	231020000	176340000	2786	959	2608	5604	13759	13759		0	9606
DYELQLVTYK	1	0	Unmodified	1270.6445	0.64451877	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.25	0.433									3	1							18.797	18.797	2	0.0028438	15026	DP690-10	96.668	54.272			1.025	1.2652	NaN	1	0	Median	123130000	60291000	62836000	2787	1319	2609	5605;5606;5607;5608	13760;13761;13762;13763;13764;13765;13766;13767	13760		8	9606
DYEPPSPSPAPGAPPPPPQR	0	1	Unmodified	2052.9905	0.99050453	895	P55196	MLLT4	Afadin	yes	yes	0	0	0	10	0										1							14.457	14.457	2	3.0464E-05	8713	DP690-10	160.18	128.71			NaN	NaN	NaN	0	0	Median	0	0	0	2788	895	2610	5609	13768	13768		1	9606
DYFEEYGKIDTIEIITDR	1	1	Unmodified	2219.0634	0.063394703	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	14.3	0.471														2	1		21.026	21.026	3	1.2644E-13	16945	DP690-14	189.45	150.56			0.8175	0.98498	5.6164	2	0	Median	55911000	33237000	22674000	2789	563	2611	5610;5611;5612	13769;13770;13771;13772;13773;13774;13775;13776	13771		8	9606
DYFFALAHTVR	0	1	Unmodified	1338.6721	0.67207093	467	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	3	0			1														18.796	18.796	2	0.0019756	13663	DP690-3	98.249	98.249			0.85377	0.9734	NaN	1	0	Median	12782000	7246200	5535800	2790	467	2612	5613	13777;13778	13777		2	9606
DYGNSPLHR	0	1	Unmodified	1057.4941	0.49410656	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	11	2.88				1								5	1				11.064	11.064	2;3	0.00062355	3659	DP690-12	145.16	96.4			0.73416	0.79973	17.348	2	0	Median	3488499999.9999995	1838599999.9999998	1649899999.9999998	2791	595	2613	5614;5615;5616;5617;5618;5619;5620	13779;13780;13781;13782;13783;13784;13785;13786;13787;13788;13789;13790;13791;13792	13782		14	9606
DYGVLLEGSGLALR	0	1	Unmodified	1461.7827	0.78274359	620	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	10	3.56							1	1							1		21.291	21.291	2	2.9592E-05	16603	DP690-15	173.64	131.3			1.1771	1.3492	50.436	3	0	Median	38120000	19019000	19100000	2792	620	2614	5621;5622;5623	13793;13794;13795;13796;13797;13798;13799;13800;13801	13796		9	9606
DYILEGEPGK	1	0	Unmodified	1119.5448	0.54480473	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	12	0												1					15.563	15.563	2	0.033284	9819	DP690-12	69.812	40.894			0.87255	1.0074	NaN	1	0	Median	117930000	65894000	52039000	2793	2342	2615	5624	13802	13802		1	9606
DYIPVDQEELRDYVK	1	1	Unmodified	1880.9156	0.91560825	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								18.197	18.197	3	0.0018781	12664	DP690-9	78.401	55.041			0.68937	0.79954	NaN	1	0	Median	15255000	7903700	7351300	2794	1264	2616	5625	13803;13804;13805;13806	13805		4	9606
DYLDFLDDEEDQGIYQSK	1	0	Unmodified	2191.9433	0.94333915	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	8.25	3.11			1						1	1	1						22.444	22.444	2	1.4897E-59	19786	DP690-11	345.15	345.15			0.7711	0.91546	8.1157	4	0	Median	172430000	93665000	78762000	2795	581	2617	5626;5627;5628;5629	13807;13808;13809;13810;13811;13812;13813;13814;13815;13816;13817;13818;13819;13820;13821;13822	13809		16	9606
DYLHLPPEIVPATLR	0	1	Unmodified	1732.9512	0.9512059	762	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	14	3.46								1								3	20.425	20.425	2;3	0.00012752	14994	DP690-16	99.481	72.699			0.75985	0.83429	4.4209	3	0	Plateau	95858000	54015000	41843000	2796	762	2618	5630;5631;5632;5633	13823;13824;13825;13826;13827;13828;13829;13830;13831;13832;13833;13834;13835	13824		13	9606
DYLLCDYNR	0	1	Unmodified	1230.5339	0.53392246	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	11.6	4.22						1	1							1	1	1	17.13	17.13	2	0.00069839	11589	DP690-15	140.09	112.35			0.84105	0.95561	2.56	5	0	Median	419190000	216510000	202680000	2797	769	2619	5634;5635;5636;5637;5638	13836;13837;13838;13839;13840;13841;13842;13843;13844;13845;13846;13847;13848;13849;13850;13851;13852	13840		17	9606
DYLLCDYNRDGDSYR	0	2	Unmodified	1923.8057	0.80574023	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	1	14	0														1			16.405	16.405	3	0.0088461	10849	DP690-14	66.004	45.921			0.7752	0.91099	NaN	1	0	Median	57125000	28996000	28129000	2798	769	2620	5639	13853;13854;13855;13856	13853		4	9606
DYNPYPYSDAINTYDK	1	0	Unmodified	1937.8319	0.8319382	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	10	0										1							18.439	18.439	2	0.0034566	14622	DP690-10	78.486	64.228			0.50815	0.62125	NaN	1	0	Median	26962000	17969000	8992200	2799	1546	2621	5640	13857;13858;13859	13859		3	9606
DYPNICAGTDR	0	1	Unmodified	1280.5455	0.54554978	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	0	0	10	4						1								1			14.504	14.504	2	0.02088	7585	DP690-6	72.325	55.992			0.74677	0.85981	24.776	2	0	Median	124220000	70154000	54067000	2800	1372	2622	5641;5642	13860;13861;13862;13863;13864	13864		5	9606
DYQELMNTK	1	0	Unmodified	1140.5121	0.51212439	369;25;49	P04264;CON__P04264;CON__Q3TTY5;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	5	4	1								1								15.456	15.456	2	5.509E-10	7006	DP690-1	176.6	80.695		+	NaN	NaN	NaN	0	0	Median	49018000	49018000	0	2801	369;49;25	2623	5643;5644	13865;13866;13867	13865		3	9606
DYQELMNTK	1	0	Oxidation (M)	1156.507	0.50703901	369;25;49	P04264;CON__P04264;CON__Q3TTY5;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	no	no	0	1	0	6	2				1				1									12.348	12.348	2	0.0073464	5103	DP690-8	115.49	66.053		+	NaN	NaN	NaN	0	0	Median	54511000	54511000	0	2802	369;49;25	2623	5645;5646	13868;13869;13870	13870	25	3	9606
DYQELMNVK	1	0	Oxidation (M)	1154.5278	0.52777445	44	P35908;CON__P35908v2;CON__P35908;Q01546;CON__Q01546	KRT2;KRT76	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral	no	no	0	1	0	2.5	1.5	1			1													13.986	13.986	2	0.0053015	7189	DP690-4	120.87	66.257		+	NaN	NaN	NaN	0	0	Median	32924000	32924000	0	2803	44	2624	5647;5648	13871;13872;13873;13874	13874	53	4	9606
DYQGPLKEHEVTIFVR	1	1	Unmodified	1929.9949	0.99486163	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	3	0			1														16.438	16.438	3	0.00042222	10578	DP690-3	92.952	66.587			0.84255	0.93446	NaN	1	0	Median	22505000	11903000	10602000	2804	873	2625	5649	13875;13876	13876		2	9606
DYSPYFK	1	0	Unmodified	918.41233	0.41233399	40;29;50	CON__P02533;P02533;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8	KRT14;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16	no	no	0	0	0	16	0																1	15.753	15.753	1	0.014146	9658	DP690-16	114.72	57.257		+	NaN	NaN	NaN	0	0	Median	2620400	2620400	0	2805	29;40;50	2626	5650	13877	13877		1	9606
DYSSGFGGK	1	0	Unmodified	916.39266	0.39266118	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	11	0											1						13.056	13.056	2	0.054483	6445	DP690-11	66.073	43.451			0.94996	1.0775	NaN	1	0	Median	198840000	100970000	97864000	2806	1267	2627	5651	13878;13879;13880	13878		3	9606
DYVAPTANLDQKDK	2	0	Unmodified	1576.7733	0.77330111	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	1	11	0											1						13.01	13.01	2	0.0058496	6512	DP690-11	93.623	48.984			1.5798	1.9119	NaN	1	0	Median	21900000	6732500	15168000	2807	1524	2628	5652	13881;13882	13882		2	9606
EAAAALVEEETRR	0	2	Unmodified	1443.7318	0.73177065	280	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	1	15	0															1		14.108	14.108	2	4.6796E-10	7581	DP690-15	265.67	92.296			0.79945	0.86724	NaN	1	0	Median	23648000	13350000	10298000	2808	280	2629	5653	13883;13884;13885;13886;13887	13885		5	9606
EAAASGLPLMVIIHK	1	0	Oxidation (M)	1564.8647	0.86469908	345	O95881	TXNDC12	Thioredoxin domain-containing protein 12	yes	yes	0	1	0	12.8	3.92								2								3	17.253	17.253	2;3	0.0020288	10601	DP690-8	77.527	69.127			0.81804	0.95103	19.843	4	0	Median	41781000	22235000	19546000	2809	345	2630	5654;5655;5656;5657;5658	13888;13889;13890;13891;13892;13893;13894;13895;13896;13897	13895	355	10	9606
EAACLQQTQIEEAR	0	1	Unmodified	1645.773	0.77298354	88	O00468	AGRN	Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment	yes	yes	0	0	0	9	0									1								13.73	13.73	2	2.1783E-05	6796	DP690-9	175.33	131.67			0.95144	1.1889	NaN	1	0	Median	11129000	5755300	5374000	2810	88	2631	5659	13898;13899;13900;13901;13902	13898		5	9606
EAADMILVDDDFQTIMSAIEEGK	1	0	Oxidation (M)	2556.1611	0.16113619	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	1	0	11	0											2						25.953	25.953	2	0.005919	24007	DP690-11	91.657	57.556			NaN	NaN	NaN	0	0	Median	806850	0	806850	2811	1068	2632	5660;5661	13903;13904	13903	1660	2	9606
EAAENSLVAYK	1	0	Unmodified	1193.5928	0.59281755	970	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	11	4							1								1		13.904	13.904	2	0.00011591	7015	DP690-7	138.98	106.56			0.97426	1.0874	24.504	2	0	Median	87939000	46097000	41842000	2812	970	2633	5662;5663	13905;13906;13907;13908;13909	13908		5	9606
EAAEYIAQAR	0	1	Unmodified	1120.5513	0.55128709	909	P56589	PEX3	Peroxisomal biogenesis factor 3	yes	yes	0	0	0	14	0														1			12.866	12.866	2	0.024055	6015	DP690-14	72.879	42.562			0.87164	1.0562	NaN	1	0	Median	38335000	18927000	19408000	2813	909	2634	5664	13910	13910		1	9606
EAAFSPGQQDWSR	0	1	Unmodified	1477.6586	0.65860571	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										1							15.427	15.427	2	0.0001504	10115	DP690-10	121.36	67.294			0.68872	0.85829	NaN	1	0	Median	74053000	47065000	26988000	2814	2065	2635	5665	13911	13911		1	9606
EAAGTTAAAGTGGATEQPPR	0	1	Unmodified	1812.8602	0.86021864	172	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	11	0											2						11.167	11.167	2	3.669E-43	3734	DP690-11	302.2	256.29			0.62616	0.74729	NaN	1	0	Median	44620000	31158000	13462000	2815	172	2636	5666;5667	13912;13913;13914;13915;13916;13917	13913		6	9606
EAALGAGFSDK	1	0	Unmodified	1064.5138	0.51383895	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	13	0													1				13.954	13.954	2	0.0010824	7260	DP690-13	105.98	72.178			0.87994	0.97884	NaN	1	0	Median	208420000	115020000	93396000	2816	894	2637	5668	13918;13919	13918		2	9606
EAALLEEEEGV	0	0	Unmodified	1187.5558	0.55576334	739	P43358	MAGEA4	Melanoma-associated antigen 4	yes	yes	0	0	0	6	0						1											18.816	18.816	1	0.010554	12707	DP690-6	95.531	47.357			NaN	NaN	NaN	0	0	Median	0	0	0	2817	739	2638	5669	13920	13920		1	9606
EAALSTALSEK	1	0	Unmodified	1118.5819	0.58191851	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11	0											4						14.311	14.311	2	0.0041635	8356	DP690-11	122.94	64.343			NaN	NaN	NaN	0	0	Median	160790000	160790000	0	2818	359	2639	5670;5671;5672;5673	13921;13922;13923;13924	13923		4	9606
EAALSTALSEKR	1	1	Unmodified	1274.683	0.68302954	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	11.7	0.471											1	2					12.665	12.665	2;3	0.00054737	5726	DP690-12	129.88	96.499			0.71069	0.87153	29.068	3	0	Median	236000000	139930000	96075000	2819	359	2640	5674;5675;5676	13925;13926;13927;13928;13929;13930;13931	13930		7	9606
EAALTSEEVGADLEQVEVLQK	1	0	Unmodified	2257.1325	0.1325369	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							20.585	20.585	2	2.1972E-68	17562	DP690-10	328.29	243.68			NaN	NaN	NaN	0	0	Median	15050000	15050000	0	2820	1236	2641	5677	13932;13933;13934	13932		3	9606
EAAPDAGAEPITADSDPAYSSK	1	0	Unmodified	2161.9651	0.96513722	1641	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	11	0											3						14.82	14.82	2	1.4754E-11	9175	DP690-11	171.15	141.09			NaN	NaN	NaN	0	0	Median	10907000	0	10907000	2821	1641	2642	5678;5679;5680	13935;13936;13937	13935		3	9606
EAAQAMYIDSYNSR	0	1	Oxidation (M)	1633.7042	0.70423527	2008	Q9BU61	NDUFAF3	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	yes	yes	0	1	0	16	0																1	14.118	14.118	2	3.7696E-06	7379	DP690-16	188.27	168.66			0.80478	0.93599	NaN	1	0	Median	12804000	6966500	5837700	2822	2008	2643	5681	13938;13939;13940;13941	13938	2541	4	9606
EAATAVEQEKEILLEMIHSIQNSQDMR	1	1	2 Oxidation (M)	3144.5067	0.50672802	341	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	2	1	7	0							1										19.952	19.952	3	0.0077394	14544	DP690-7	71.756	47.66			NaN	NaN	NaN	0	0	Median	0	0	0	2823	341	2644	5682	13942	13942	349;350	1	9606
EAATQAQQTLGSTIDK	1	0	Unmodified	1660.8268	0.82679325	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	6.5	3.57			2						1		1						14.457	14.457	2	2.416E-60	7860	DP690-3	267.23	189.64			NaN	NaN	NaN	0	0	Median	93019000	54096000	38923000	2824	770	2645	5683;5684;5685;5686	13943;13944;13945;13946;13947;13948;13949;13950	13947		8	9606
EACNQDALQEAGTFR	0	1	Unmodified	1708.7475	0.74749707	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									2								15.481	15.481	2	0.00019398	9221	DP690-9	117.95	100.35			0.66853	0.83791	NaN	1	0	Median	6202600	3312100	2890500	2825	1453	2646	5687;5688	13951;13952;13953	13952		3	9606
EACPELDYFVVFSSVSCGR	0	1	Unmodified	2220.982	0.98199003	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															23.161	23.161	2	1.2889E-09	16788	DP690-2	151.3	122			0.78087	0.79802	NaN	1	0	Median	2606600	1213900	1392700	2826	789	2647	5689	13954;13955	13955		2	9606
EACSYTIHAEGDER	0	1	Unmodified	1636.6787	0.6787488	1396	Q4G176	ACSF3	Acyl-CoA synthetase family member 3, mitochondrial	yes	yes	0	0	0	12	0												3					11.763	11.763	2;3	0.0089789	4546	DP690-12	112.86	88.391			0.84381	1.0013	NaN	1	0	Median	50428000	26555000	23872000	2827	1396	2648	5690;5691;5692	13956;13957;13958;13959	13959		4	9606
EACWTISNITAGNR	0	1	Unmodified	1591.7413	0.74128948	851;215	P52294;O60684	KPNA1;KPNA6	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7	no	no	0	0	0	12	0												1					17.811	17.811	2	0.012812	12893	DP690-12	102.05	61.431			NaN	NaN	NaN	0	0	Median	18672000	0	18672000	2828	851;215	2649	5693	13960	13960		1	9606
EADASPASAGICR	0	1	Unmodified	1303.5827	0.58266357	2025	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	8	4				1								1					11.891	11.891	2	5.7226E-05	4667	DP690-12	143.4	102.28			1.0285	1.2066	21.671	2	0	Median	58480000	31549000	26931000	2829	2025	2650	5694;5695	13961;13962;13963;13964;13965;13966;13967;13968	13965		8	9606
EADGSETPEPFAAEAK	1	0	Unmodified	1647.7264	0.7264105	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	11	0											1						14.911	14.911	2	0.00029426	9301	DP690-11	112.02	79.024			0.67784	0.82587	NaN	1	0	Median	33945000	21574000	12371000	2830	1524	2651	5696	13969;13970	13969		2	9606
EADQKEQFSQGSPSNCLETSLAEIFPLGK	2	0	Unmodified	3209.5187	0.51867292	2187	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	0	1	7	0							1										22.568	22.568	3	2.9875E-08	17594	DP690-7	133.46	122.25			0.69696	0.74516	NaN	1	0	Median	4881800	3059300	1822500	2831	2187	2652	5697	13971;13972;13973;13974	13973		4	9606
EAEAAIYHLQLFEELRR	0	2	Unmodified	2087.08	0.079988241	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	4	0				2													18.829	18.829	3;4	0.02411	13337	DP690-4	82.925	66.431			0.87832	0.9203	1.7065	2	0	Median	13587000	7442800	6144000	2832	488	2653	5698;5699	13975;13976	13976		1	9606
EAEGAPQVEAGK	1	0	Unmodified	1184.5673	0.56733108	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	11	0											1						10.665	10.665	2	0.0088959	3095	DP690-11	75.652	47.77			0.76327	0.87289	NaN	1	0	Median	178770000	100420000	78353000	2833	1119	2654	5700	13977	13977		1	9606
EAEILEVLR	0	1	Unmodified	1070.5972	0.59717465	680	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	6	0						1											19.249	19.249	2	0.00016608	13133	DP690-6	168.23	168.23			0.83871	0.94905	NaN	1	0	Median	18739000	9927200	8811300	2834	680	2655	5701	13978;13979;13980;13981	13980		4	9606
EAEKLESEHPDQAQAILSR	1	1	Unmodified	2150.0604	0.060375011	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							13.475	13.475	3	1.7119E-13	7287	DP690-10	180.39	136.83			0.72087	0.87515	NaN	1	0	Median	131630000	71544000	60082000	2835	1080	2656	5702	13982;13983	13982		2	9606
EAELPLLDLMK	1	0	Unmodified	1270.6843	0.6842751	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	10	0										1							22.821	22.821	2	0.0058953	20541	DP690-10	86.882	47.734			0.65466	0.79356	NaN	1	0	Median	9499200	5636700	3862600	2836	1891	2657	5703	13984;13985;13986	13986		3	9606
EAENPEGEEKEAATLEVERPLPMEVEK	2	1	Oxidation (M)	3068.4496	0.4495903	844	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	1	2	6	0						1											15.712	15.712	4	5.9239E-05	8989	DP690-6	86.182	72.286			0.57772	0.62536	NaN	1	0	Median	12400000	7640000	4759600	2837	844	2658	5704	13987;13988	13988	1270	2	9606
EAEQMGNELER	0	1	Oxidation (M)	1320.5616	0.56159378	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	1	0	10	0										1							10.714	10.714	2	0.014513	3333	DP690-10	80.916	66.681			0.6906	0.85837	NaN	1	0	Median	85215000	49200000	36014000	2838	1301	2659	5705	13989	13989	1993	1	9606
EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK	1	0	Unmodified	3310.5268	0.52681154	1389	Q3ZCM7	TUBB8	Tubulin beta-8 chain	yes	yes	0	0	0	10.7	4.03					1								1	1			20.197	20.197	3	1.1101E-21	15705	DP690-13	170.83	0			1.0836	1.0749	3.3188	3	0	Plateau	496660000	228610000	268050000	2839	1389	2660	5706;5707;5708	13990;13991;13992;13993;13994;13995;13996;13997;13998;13999;14000;14001;14002;14003	13991		14	9606
EAETFKEQGNAYYAK	2	0	Unmodified	1747.8053	0.80532952	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	1	4	0				1													12.454	12.454	3	0.00042442	5149	DP690-4	96.866	77.794			0.88688	0.91855	NaN	1	0	Median	18829000	9684700	9144600	2840	1946	2661	5709	14004;14005;14006;14007	14004		4	9606
EAFEELFAQTFSK	1	0	Unmodified	1545.7351	0.73512469	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9.67	0.471									1	2							22.396	22.396	2	7.0718E-06	17664	DP690-9	190.57	155.39			0.97684	1.2213	NaN	1	0	Median	12217000	2799700	9416900	2841	2217	2662	5710;5711;5712	14008;14009;14010;14011;14012	14010		5	9606
EAFFHQELPLYIPPPIFSR	0	1	Unmodified	2300.1994	0.19937509	2503	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	0	12	0												1					22.15	22.15	3	9.5479E-05	18462	DP690-12	107.63	107.63			0.4772	0.58381	NaN	1	0	Median	5033500	3307700	1725800	2842	2503	2663	5713	14013;14014	14013		2	9606
EAFNMIDQNR	0	1	Oxidation (M)	1252.5506	0.55063516	123	O14950;P19105;P24844	MYL12B;MYL12A;MYL9	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9	yes	no	0	1	0	16	0																1	13.119	13.119	2	0.0088936	5855	DP690-16	90.15	64.343			0.82239	0.9556	NaN	1	0	Median	22642000	8556600	14085000	2843	123	2664	5714	14015;14016	14015	133	2	9606
EAFNMIDQNR	0	1	Unmodified	1236.5557	0.55572054	123	O14950;P19105;P24844	MYL12B;MYL12A;MYL9	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9	yes	no	0	0	0	8	0								1									15.37	15.37	2	0.00042361	8512	DP690-8	120.87	97.549			0.90815	1.0936	NaN	1	0	Median	3480200	1881700	1598500	2844	123	2664	5715	14017;14018	14018		2	9606
EAFQSVVLPAFEK	1	0	Unmodified	1463.766	0.76603089	1491	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	10	0										1							19.858	19.858	2	0.037225	16636	DP690-10	63.473	28.718			0.92638	1.146	NaN	1	0	Median	68931000	36645000	32286000	2845	1491	2665	5716	14019	14019		1	9606
EAFSLFDKDGDGTITTK	2	0	Unmodified	1843.884	0.88397377	450	P0DP25;P0DP24;P0DP23			yes	no	0	0	1	16	0																1	17.343	17.343	3	9.3097E-05	11595	DP690-16	113.67	67.392			0.79367	0.90332	NaN	1	0	Median	19646000	11312000	8334600	2846	450	2666	5717	14020	14020		1	9606
EAFTNKPNVFTVVTR	1	1	Unmodified	1721.9101	0.91006937	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										2							16.3	16.3	2;3	0.0010929	11427	DP690-10	113.43	79.332			0.78895	0.99084	NaN	1	0	Median	225810000	22971000	202840000	2847	250	2667	5718;5719	14021;14022;14023;14024;14025	14024		5	9606
EAFVVEEWVK	1	0	Unmodified	1234.6234	0.6233894	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	3	0			1														19.623	19.623	2	0.0085656	14656	DP690-3	85.67	56.752			3.0843	3.2195	NaN	1	0	Median	2746400	905720	1840700	2848	670	2668	5720	14026	14026		1	9606
EAGAGGLAIAVEGPSK	1	0	Unmodified	1425.7464	0.74635808	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.5	3.59		1							1	1	1	1	1				16.011	16.011	2	9.6251E-09	10926	DP690-10	182.25	141.17			0.77396	0.88766	6.6206	6	0	Median	2139099999.9999998	1173100000	966000000	2849	549	2669	5721;5722;5723;5724;5725;5726	14027;14028;14029;14030;14031;14032;14033;14034;14035;14036;14037;14038;14039;14040;14041;14042;14043;14044;14045;14046	14029		20	9606
EAGAGGLAIAVEGPSKAEISFEDRK	2	1	Unmodified	2501.2762	0.27618145	549	P21333	FLNA	Filamin-A	yes	yes	0	0	2	10	0										2							16.944	16.944	3;4	1.0192E-10	12350	DP690-10	157.7	79.349			0.7795	0.8895	18.226	2	0	Median	320390000	159370000	161020000	2850	549	2670	5727;5728	14047;14048;14049;14050;14051;14052	14051		6	9606
EAGAGGLSIAVEGPSK	1	0	Unmodified	1441.7413	0.7412727	1270;250	O75369;Q14315	FLNB;FLNC	Filamin-B;Filamin-C	no	no	0	0	0	7	3.56		1							1	1							15.716	15.716	2	1.5806E-17	10541	DP690-10	222.72	168.95			0.54025	0.61081	NaN	1	0	Median	500640000	315450000	185190000	2851	250;1270	2671	5729;5730;5731	14053;14054;14055;14056;14057;14058;14059;14060	14053		8	9606
EAGDGVFECEYYPVVPGK	1	0	Unmodified	2014.8982	0.89824363	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							19.012	19.012	2	1.0297E-16	15280	DP690-10	201.48	179.6			0.81675	0.89929	4.7233	2	0	Median	207080000	116820000	90261000	2852	1270	2672	5732;5733;5734	14061;14062;14063;14064;14065;14066;14067;14068;14069;14070	14062		10	9606
EAGDVCYADVQK	1	0	Unmodified	1353.5871	0.58708025	1192	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	15	0															1		13.046	13.046	2	0.0041855	6047	DP690-15	123.11	103.11			NaN	NaN	NaN	0	0	Median	15407000	15407000	0	2853	1192	2673	5735	14071;14072	14071		2	9606
EAGDVCYADVYR	0	1	Unmodified	1416.598	0.59797928	1136	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	15	0															1		15.374	15.374	2	4.3364E-05	9216	DP690-15	150.15	124.72			0.93055	1.0466	NaN	1	0	Median	63162000	32671000	30490000	2854	1136	2674	5736	14073;14074;14075;14076	14074		4	9606
EAGELKPEEEITVGPVQK	2	0	Unmodified	1952.0102	0.01023692	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	7	4			2								2						15.029	15.029	2;3	3.8504E-10	9463	DP690-11	154.51	116.4			0.66403	0.74538	73.842	3	0	Median	261220000	143550000	117660000	2855	877	2675	5737;5738;5739;5740	14077;14078;14079;14080;14081;14082;14083;14084;14085;14086;14087;14088	14077		12	9606
EAGEQGDIEPR	0	1	Unmodified	1199.5418	0.54184461	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	12	0												1					10.927	10.927	2	0.00018528	3397	DP690-12	157.99	135.41			0.79085	0.94051	NaN	1	0	Median	67510000	38183000	29327000	2856	1196	2676	5741	14089;14090;14091;14092	14089		4	9606
EAGFLRPVTIFGPIADVAR	0	2	Unmodified	2028.1156	0.11564547	1132	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	1	10	0										1							21.343	21.343	3	0.0033123	18538	DP690-10	96.805	59.16			NaN	NaN	NaN	0	0	Median	10588000	10588000	0	2857	1132	2677	5742	14093	14093		1	9606
EAGGNYTPALTEQEVYAQVAR	0	1	Unmodified	2266.0866	0.086589761	1927	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	10	0										1							18.965	18.965	2	2.1735E-15	15231	DP690-10	198.85	160.85			NaN	NaN	NaN	0	0	Median	0	0	0	2858	1927	2678	5743	14094	14094		1	9606
EAGVEMGDEDDLSTPNEK	1	0	Oxidation (M)	1950.8	0.80004573	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	1	0	8	4				1								1					13.453	13.453	2	1.4312000000000002E-29	6472	DP690-4	241.35	228.25			0.82922	0.95017	4.1859	2	0	Median	45894000	24629000	21265000	2859	495	2679	5744;5745	14095;14096;14097;14098;14099;14100;14101;14102	14099	630	8	9606
EAGVEMGDEDDLSTPNEK	1	0	Unmodified	1934.8051	0.80513111	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	12	0												1					15.047	15.047	2	0.0029698	9050	DP690-12	127.78	127.78			0.55263	0.66441	NaN	1	0	Median	18866000	11087000	7778300	2860	495	2679	5746	14103	14103		0	9606
EAHEPLAVADAK	1	0	Unmodified	1249.6303	0.63026569	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	12	0												2					11.187	11.187	2;3	0.00016624	3748	DP690-12	98.407	82.517			0.93146	1.1154	6.3101	2	0	Median	79887000	37501000	42386000	2861	2450	2680	5747;5748	14104;14105;14106;14107;14108;14109;14110;14111;14112;14113	14107		10	9606
EAHKPPVFIEK	2	0	Unmodified	1293.7081	0.70812208	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	9.67	3.83			1	1					2	1	1	1		1	1		10.77	10.77	3	3.5767E-05	3314	DP690-11	171.67	136.89			0.66372	0.74046	7.5287	6	0	Median	1237200000	746000000	491170000	2862	1758	2681	5749;5750;5751;5752;5753;5754;5755;5756;5757	14114;14115;14116;14117;14118;14119;14120;14121;14122;14123;14124;14125;14126;14127;14128;14129;14130;14131;14132;14133;14134;14135;14136;14137	14120		24	9606
EAHQLFLEPEVLDPESVELK	1	0	Unmodified	2321.1791	0.17909316	700	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	13	0													1				20.388	20.388	3	6.9146E-15	15913	DP690-13	193.72	159.71			0.65844	0.75995	NaN	1	0	Median	78723000	46712000	32011000	2863	700	2682	5758	14138;14139;14140;14141	14138		4	9606
EAIAELEREK	1	1	Unmodified	1186.6194	0.61936665	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							12.649	12.649	2	0.003294	5302	DP690-9	134.77	50.023			0.86769	1.0998	NaN	1	0	Median	69457000	36422000	33035000	2864	1319	2683	5759;5760	14142;14143;14144	14144		3	9606
EAIAELEREKEK	2	1	Unmodified	1443.7569	0.75692277	1319	Q15149	PLEC	Plectin	yes	yes	0	0	2	9	0									1								11.098	11.098	3	7.7694E-05	3462	DP690-9	149.94	109.33			0.86455	0.92504	NaN	1	0	Median	22646000	12012000	10635000	2865	1319	2684	5761	14145;14146;14147;14148;14149;14150	14146		6	9606
EAIEGTYIDK	1	0	Unmodified	1137.5554	0.55536941	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	13.8	2.93								1							3	1	14.021	14.021	2	9.5087E-05	7221	DP690-16	146.69	103.83			0.96978	1.0771	16.382	2	0	Median	265190000	110970000	154210000	2866	976	2685	5762;5763;5764;5765;5766	14151;14152;14153;14154;14155;14156;14157;14158;14159;14160	14155		10	9606
EAIEGTYIDKK	2	0	Unmodified	1265.6503	0.65033243	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	14	3.03								1							2	2	12.024	12.024	2;3	0.00039981	4589	DP690-15	138.08	91.951			0.88791	0.97501	7.9596	4	0	Linear	1502399999.9999998	781400000	720990000	2867	976	2686	5767;5768;5769;5770;5771	14161;14162;14163;14164;14165;14166;14167;14168;14169;14170	14162		10	9606
EAIESAIGGNAYQHSK	1	0	Unmodified	1673.8009	0.80091285	1017	P63172	DYNLT1	Dynein light chain Tctex-type 1	yes	yes	0	0	0	16	0																2	13.348	13.348	2;3	3.0563E-22	6327	DP690-16	253.42	183.02			0.8859	0.98903	1.8243	2	0	Median	144300000	74654000	69648000	2868	1017	2687	5772;5773	14171;14172;14173;14174;14175;14176;14177;14178	14172		8	9606
EAIHSQLLEK	1	0	Unmodified	1166.6295	0.62953741	230	O60925	PFDN1	Prefoldin subunit 1	yes	yes	0	0	0	8	0								1									11.995	11.995	2	0.00023443	4691	DP690-8	126.31	39.643			0.92047	1.0689	NaN	1	0	Median	4482000	2205400	2276600	2869	230	2688	5774	14179;14180;14181	14181		3	9606
EAIILDNLQEELPEISK	1	0	Unmodified	1953.0306	0.030638011	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9.5	0.5									1	1							21.902	21.902	2	0.00022181	17103	DP690-9	132.06	108.23			0.68273	0.84612	NaN	1	0	Median	10170000	8336500	1833900	2870	1762	2689	5775;5776	14182;14183;14184;14185	14184		4	9606
EAILEYILHQK	1	0	Unmodified	1355.7449	0.74490152	2454	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	6	0						3											19.877	19.877	2	0.00040231	13939	DP690-6	177.7	114.48			NaN	NaN	NaN	0	0	Median	2138700	0	2138700	2871	2454	2690	5777;5778;5779	14186;14187;14188;14189	14188		4	9606
EAINLLEPMTNDPVNYVR	0	1	Oxidation (M)	2103.0307	0.030654787	1935	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	1	0	3	0			1														19.512	19.512	2	0.011925	14505	DP690-3	109.44	56.887			NaN	NaN	NaN	0	0	Median	0	0	0	2872	1935	2691	5780	14190	14190	2466	1	9606
EAIQCVDNNQSVLVSAHTSAGK	1	0	Unmodified	2327.1176	0.11757231	726	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	11	0											1						14.142	14.142	3	0.0003622	8175	DP690-11	89.816	71.992			1.1383	1.3742	NaN	1	0	Median	52479000	26170000	26309000	2873	726	2692	5781	14191	14191		1	9606
EAISDLQQLWK	1	0	Unmodified	1329.6929	0.69286595	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11	0											1						20.17	20.17	2	9.4557E-05	16860	DP690-11	130.96	82.872			0.94657	1.1225	NaN	1	0	Median	111700000	58409000	53295000	2874	288	2693	5782	14192;14193	14192		2	9606
EAITHLLGVALTR	0	1	Unmodified	1392.8089	0.80889876	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	6.5	3.5			1							1							18.825	18.825	3	0.03547	13705	DP690-3	52.5	52.5			1.0901	1.2956	2.4766	2	0	Median	61931000	30357000	31574000	2875	1311	2694	5783;5784	14194;14195;14196;14197	14196		4	9606
EAIVNSCVFVHQTLHQANAR	0	1	Unmodified	2293.1386	0.13858253	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									2								15.078	15.078	3;4	0.0014322	8621	DP690-9	95.666	95.666			0.73427	0.91806	24.439	2	0	Median	21025000	10128000	10897000	2876	1264	2695	5785;5786	14198;14199;14200;14201	14198		4	9606
EAKPDELMDSK	2	0	Unmodified	1261.586	0.58601761	2293	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	1	15	0															1		11.371	11.371	2	0.0053055	3975	DP690-15	115.23	15.444			0.67588	0.77348	NaN	1	0	Median	14839000	9161500	5677300	2877	2293	2696	5787	14202	14202		1	9606
EAKPEDLMDSK	2	0	Unmodified	1261.586	0.58601761	313	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	1	15	0															1		11.371	11.371	2	0.00059674	3912	DP690-15	126.39	0			0.67588	0.77348	NaN	1	0	Median	14839000	9161500	5677300	2878	313	2697	5788	14203	14203		1	9606
EALAFIIR	0	1	Unmodified	931.5491	0.54910224	94	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	12	0												1					18.755	18.755	2	0.053184	14200	DP690-12	138.85	84.237			0.98951	1.1725	NaN	1	0	Median	41845000	21197000	20648000	2879	94	2698	5789	14204	14204		0	9606
EALDVLGAVLK	1	0	Unmodified	1126.6598	0.6597749	1773	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	14	0														1			21.094	21.094	2	0.0011834	16998	DP690-14	105.1	57.444			0.89029	1.0792	NaN	1	0	Median	33217000	17310000	15907000	2880	1773	2699	5790	14205;14206;14207;14208	14205		4	9606
EALEAESAWCYLYGTGSVAGVYLPGSR	0	1	Unmodified	2905.3593	0.35925915	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									2								23.312	23.312	2	1.7315E-38	18656	DP690-9	273.44	247.62			0.59499	0.73993	NaN	1	0	Median	3611200	2520000	1091200	2881	1319	2700	5791;5792	14209;14210;14211;14212	14210		4	9606
EALEHKDREDYVPYTGEK	2	1	Unmodified	2178.0229	0.022926872	2264	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	2	14	0														1			12.028	12.028	3	0.059406	4822	DP690-14	85.576	59.968			NaN	NaN	NaN	0	0	Median	10305000	10305000	0	2882	2264	2701	5793	14213	14213		1	9606
EALELTDTGLLSGSEER	0	1	Unmodified	1818.8847	0.88470206	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								19.236	19.236	2	1.8381999999999999E-22	13889	DP690-9	248.36	160.7			0.88928	1.1117	NaN	1	0	Median	10149000	5292000	4857300	2883	1264	2702	5794	14214	14214		1	9606
EALEPSGENVIQNK	1	0	Unmodified	1526.7577	0.75765105	257	O75477	ERLIN1	Erlin-1	yes	yes	0	0	0	14	0														1			14.055	14.055	2	0.0032578	7587	DP690-14	152.54	74.276			NaN	NaN	NaN	0	0	Median	0	0	0	2884	257	2703	5795	14215	14215		1	9606
EALFNEFVAAAR	0	1	Unmodified	1336.6776	0.67755023	113	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	10	0										1							20.374	20.374	2	0.010391	17223	DP690-10	107.79	66.759			NaN	NaN	NaN	0	0	Median	0	0	0	2885	113	2704	5796	14216	14216		1	9606
EALGDAQQSVR	0	1	Unmodified	1172.5786	0.57856447	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	4	0				1													11.607	11.607	2	0.00020966	4175	DP690-4	147.75	102.07			0.90948	1.0387	NaN	1	0	Median	22445000	11376000	11070000	2886	1946	2705	5797	14217;14218	14217		2	9606
EALGGINELK	1	0	Unmodified	1042.5659	0.56587452	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								15.196	15.196	2	0.052496	8874	DP690-9	63.426	21.139			0.96181	1.2255	NaN	1	0	Median	8488300	4467300	4021000	2887	1453	2706	5798	14219	14219		1	9606
EALLLVTVLTSLSK	1	0	Unmodified	1485.9018	0.90179609	2234	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	10	0										1							26.027	26.027	2	0.00049492	24300	DP690-10	107.85	107.85			0.82395	0.94485	NaN	1	0	Median	1314800	748810	566000	2888	2234	2707	5799	14220;14221;14222	14222		3	9606
EALLSSAVDHGSDEVK	1	0	Unmodified	1655.8002	0.80024414	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	6	3.46				3								1					14.491	14.491	2;3	1.3061E-07	8352	DP690-12	171.26	119.82			1.0165	1.0966	48.449	2	0	Median	88627000	46437000	42190000	2889	1044	2708	5800;5801;5802;5803	14223;14224;14225;14226;14227;14228;14229;14230	14223		8	9606
EALMQQLNSESLTALLK	1	0	Oxidation (M)	1903.9925	0.99247837	909	P56589	PEX3	Peroxisomal biogenesis factor 3	yes	yes	0	1	0	14	0														1			20.675	20.675	2	6.3347E-05	16535	DP690-14	147.33	70.203			NaN	NaN	NaN	0	0	Median	5735700	5735700	0	2890	909	2709	5804	14231	14231	1405	1	9606
EALNVINTHTK	1	0	Unmodified	1238.6619	0.66190017	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11	0											2						12.171	12.171	2;3	0.00027831	5167	DP690-11	161.51	161.51			1.2703	1.5094	57.285	2	0	Median	223330000	104890000	118440000	2891	288	2710	5805;5806	14232;14233;14234;14235	14232		4	9606
EALPAPSDDATALMTDPK	1	0	Oxidation (M)	1857.8666	0.86660915	401	P07203	GPX1	Glutathione peroxidase 1	yes	yes	0	1	0	7	0							1										15.73	15.73	2	0.0024942	9209	DP690-7	107.46	71.788			NaN	NaN	NaN	0	0	Median	8755100	8755100	0	2892	401	2711	5807	14236	14236	433	1	9606
EALPDILTSIIR	0	1	Unmodified	1339.7711	0.77111627	1581	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	11	0											1						23.437	23.437	2	0.0001261	21067	DP690-11	148.91	148.91			0.75304	0.928	NaN	1	0	Median	12108000	6907600	5200900	2893	1581	2712	5808	14237;14238;14239;14240	14238		4	9606
EALQEQLDER	0	1	Unmodified	1229.5888	0.58879481	1211	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	2	0		1															13.825	13.825	2	0.022775	6306	DP690-2	99.013	34.973			NaN	NaN	NaN	0	0	Median	0	0	0	2894	1211	2713	5809	14241	14241		1	9606
EALQYFYFLR	0	1	Unmodified	1348.6816	0.68157298	1643	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	7	4			1								1						21.73	21.73	2	0.0082315	18923	DP690-11	113.5	55.95			NaN	NaN	NaN	0	0	Median	23114000	21573000	1541100	2895	1643	2714	5810;5811	14242;14243;14244	14243		3	9606
EALSNKVDELAHFLLR	1	1	Unmodified	1853.9999	0.99994701	739	P43358	MAGEA4	Melanoma-associated antigen 4	yes	yes	0	0	1	14	0														1			21.25	21.25	4	1.1848E-06	17251	DP690-14	136.83	105.23			0.75102	0.94419	NaN	1	0	Median	25976000	13760000	12217000	2896	739	2715	5812	14245;14246	14246		2	9606
EAMEDGEIDGNK	1	0	Unmodified	1306.5347	0.53471033	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11	0											1						12.348	12.348	2	0.0019329	5469	DP690-11	95.573	82.22			1.147	1.4001	NaN	1	0	Median	25744000	11435000	14309000	2897	534	2716	5813	14247;14248	14247		2	9606
EAMNDPLLER	0	1	Oxidation (M)	1202.5601	0.56013721	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	3	0			1														14.134	14.134	2	0.014901	7477	DP690-3	101.46	52.664			NaN	NaN	NaN	0	0	Median	13289000	0	13289000	2898	161	2717	5814	14249;14250	14250	182	2	9606
EANAGNLKPLFEFVR	1	1	Unmodified	1703.8995	0.89950468	1146	Q0PNE2	ELP6	Elongator complex protein 6	yes	yes	0	0	1	7	0							1										19.043	19.043	3	0.0015386	13437	DP690-7	81.992	63.318			1.0812	1.1395	NaN	1	0	Median	10150000	5380400	4769200	2899	1146	2718	5815	14251;14252	14251		2	9606
EANFTVSSMHGDMPQK	1	0	2 Oxidation (M)	1809.7662	0.7661836	696	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	2	0	13	0													2				10.868	10.868	2;3	1.0336E-07	3294	DP690-13	168.82	120.85			0.93469	1.0815	NaN	1	0	Median	52666000	27125000	25541000	2900	696	2719	5816;5817	14253;14254;14255;14256;14257;14258	14258	1015;1016	6	9606
EANGLPIMESNCFDPSK	1	0	Oxidation (M)	1923.8343	0.83426316	2247	Q9NX14	NDUFB11	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial	yes	yes	0	1	0	16	0																1	16.886	16.886	2	0.0088467	10940	DP690-16	101.43	61.365			NaN	NaN	NaN	0	0	Median	2438800	2438800	0	2901	2247	2720	5818	14259;14260	14260	2715	2	9606
EANHNVSAPYGR	0	1	Unmodified	1313.6113	0.61126158	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	3	0			1														10.396	10.396	3	0.020897	2626	DP690-3	62.732	36.819			NaN	NaN	NaN	0	0	Median	46521000	46521000	0	2902	1531;1849	2721	5819	14261	14261		1	9606
EANMPLPGYK	1	0	Oxidation (M)	1134.5379	0.53794521	484	P13797	PLS3	Plastin-3	yes	yes	0	1	0	4	0				1													12.498	12.498	2	0.059183	5221	DP690-4	82.75	15.257			NaN	NaN	NaN	0	0	Median	6197800	6197800	0	2903	484	2722	5820	14262;14263	14263		2	9606
EANNFLWPFK	1	0	Unmodified	1264.6241	0.6240581	525	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	7	0							1										21.557	21.557	2	0.0094193	16473	DP690-7	84.476	44.539			0.84801	0.90879	NaN	1	0	Median	3938900	2240600	1698300	2904	525	2723	5821	14264;14265	14265		2	9606
EAPAGPLEEDDLEPLTLAPAPAPRPPQDLIGLR	0	2	Unmodified	3457.8093	0.80929927	1791	Q92797	SYMPK	Symplekin	yes	yes	0	0	1	10	0										1							21.385	21.385	3	3.191E-05	18680	DP690-10	82.479	49.065			NaN	NaN	NaN	0	0	Median	14327000	14327000	0	2905	1791	2724	5822	14266;14267;14268	14266		3	9606
EAPATQASSTTQLTDTQVLAAENK	1	0	Unmodified	2474.2136	0.21364077	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	4	0				1													16.122	16.122	2	5.7026E-68	10016	DP690-4	314.68	314.68			0.75618	0.81761	NaN	1	0	Median	29361000	16842000	12519000	2906	2405	2725	5823	14269;14270;14271;14272;14273;14274;14275	14271		7	9606
EAPCVLIYIPDGHTK	1	0	Unmodified	1711.8603	0.86034198	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	6	4		1								1							17.798	17.798	3	9.1136E-05	11075	DP690-2	114.21	84.032			0.75437	0.84084	2.9026	2	0	Median	110970000	69527000	41445000	2907	408	2726	5824;5825	14276;14277;14278;14279;14280;14281	14278		6	9606
EAPEPMELDGPK	1	0	Oxidation (M)	1327.5966	0.5965823	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	1	0	3	0			1														12.867	12.867	2	0.057595	5729	DP690-3	82.831	56.939			NaN	NaN	NaN	0	0	Median	14546000	14546000	0	2908	724	2727	5826	14282	14282		1	9606
EAPETDTSPSLWDVEFAK	1	0	Unmodified	2020.9266	0.92656687	1785	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	14	0														1			20.267	20.267	2	0.0026769	15917	DP690-14	110.55	74.871			NaN	NaN	NaN	0	0	Median	7002300	7002300	0	2909	1785	2728	5827	14283;14284	14283		2	9606
EAPNPIHLTVDTSLQNGR	0	1	Unmodified	1960.9967	0.99665254	80	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	13	0													1				16.295	16.295	3	0.00033274	10606	DP690-13	120.59	92.82			NaN	NaN	NaN	0	0	Median	25721000	0	25721000	2910	80	2729	5828	14285;14286	14285		2	9606
EAPPMEKPEVVK	2	0	Oxidation (M)	1368.6959	0.69590241	993	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	1	1	12	4								2								2	10.365	10.365	2;3	0.00072078	2801	DP690-16	95.477	75.198			0.73613	0.8468	6.6345	4	0	Median	1039399999.9999999	589460000	449960000	2911	993	2730	5829;5830;5831;5832	14287;14288;14289;14290;14291;14292;14293;14294;14295;14296;14297;14298;14299;14300	14288	1516	14	9606
EAPPMEKPEVVK	2	0	Unmodified	1352.701	0.70098779	993	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	1	8	0								1									11.674	11.674	3	0.068122	4345	DP690-8	87.713	50.033			NaN	NaN	NaN	0	0	Median	1801600	1801600	0	2912	993	2730	5833	14301	14301		1	9606
EAPTAYSLLIMHR	0	1	Oxidation (M)	1516.7708	0.77079869	1121	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	1	0	4	0				1													16.916	16.916	3	0.002779	11007	DP690-4	79.744	58.349			0.79938	0.93119	NaN	1	0	Median	11365000	6383500	4981500	2913	1121	2731	5834	14302	14302	1741	1	9606
EAPVPSLHLK	1	0	Unmodified	1089.6182	0.61824444	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5.77	2.93	1	2	2	2	12	5	2	2					2	1			16.341	16.341	2;3	2.4007E-06	6941	DP690-5	167.23	93.612			67.88	72.903	18.899	5	0	Median	12897000000	103200000	12794000000	2914	2071	2732	5835;5836;5837;5838;5839;5840;5841;5842;5843;5844;5845;5846;5847;5848;5849;5850;5851;5852;5853;5854;5855;5856;5857;5858;5859;5860;5861;5862;5863;5864;5865	14303;14304;14305;14306;14307;14308;14309;14310;14311;14312;14313;14314;14315;14316;14317;14318;14319;14320;14321;14322;14323;14324;14325;14326;14327;14328;14329;14330;14331;14332;14333;14334;14335;14336;14337;14338;14339;14340;14341;14342;14343;14344;14345;14346;14347;14348;14349;14350;14351;14352;14353;14354;14355;14356;14357;14358	14323		56	9606
EAPVPSLHLKLLSVVPVPEGYSVK	2	0	Unmodified	2557.452	0.45196097	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	1	5.67	0.471					1	2											19.86	19.86	3;4	1.5106E-08	14171	DP690-5	136.11	114.61			NaN	NaN	NaN	0	0	Median	82650000	0	82650000	2915	2071	2733	5866;5867;5868	14359;14360;14361;14362;14363	14360		5	9606
EAQAVPATLPELEATK	1	0	Unmodified	1666.8778	0.87776618	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	7	3.56		1							1	1							17.472	17.472	2	2.8997E-06	11736	DP690-9	142.76	117.91			0.71445	0.81205	2.5612	3	0	Median	433140000	244930000	188210000	2916	1319	2734	5869;5870;5871	14364;14365;14366;14367;14368;14369;14370;14371;14372;14373	14373		10	9606
EAQELSQNSAIK	1	0	Unmodified	1316.6572	0.65720872	2195	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	11	0											2						11.896	11.896	2	0.0031739	4976	DP690-11	128.51	55.634			NaN	NaN	NaN	0	0	Median	36403000	36403000	0	2917	2195	2735	5872;5873	14374;14375	14374		2	9606
EAQFYEIKPLVK	2	0	Unmodified	1463.8024	0.8024164	1969	Q9BQ13	KCTD14	BTB/POZ domain-containing protein KCTD14	yes	yes	0	0	1	15	0															2		16.266	16.266	2;3	0.0001833	10452	DP690-15	113.38	84.995			0.70969	0.81238	9.0445	2	0	Median	61792000	34334000	27459000	2918	1969	2736	5874;5875	14376;14377;14378;14379;14380	14378		5	9606
EAQGNSSAGVEAAEQRPVEDGER	0	2	Unmodified	2385.0793	0.079272552	1480	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	1	11.5	0.5											1	1					12.102	12.102	3	2.0987E-06	5168	DP690-11	128.66	114.23			0.68505	0.84447	NaN	1	0	Median	104140000	52928000	51211000	2919	1480	2737	5876;5877	14381;14382;14383;14384;14385	14384		5	9606
EAQKELEALIQNLDNVVEDSMLVDPK	2	0	Unmodified	2939.4798	0.47976821	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	1	10	0										1							26.748	26.748	3	0.083712	25042	DP690-10	31.041	16.558			0.86004	0.96516	NaN	1	0	Median	1514800	864750	650020	2920	1071	2738	5878	14386	14386		1	9606
EAQLYAAQAHLK	1	0	Unmodified	1341.7041	0.70409934	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	3.67	0.471			1	2													12.818	12.818	2;3	6.7624E-08	5664	DP690-4	205.83	139.53			1.5154	1.6448	68.651	2	0	Median	45257000	14400000	30857000	2921	788	2739	5879;5880;5881	14387;14388;14389;14390;14391;14392;14393;14394;14395;14396;14397	14394		11	9606
EAQQYSEALASTR	0	1	Unmodified	1452.6845	0.68448611	2118	Q9H4G4	GLIPR2	Golgi-associated plant pathogenesis-related protein 1	yes	yes	0	0	0	16	0																1	13.812	13.812	2	0.025197	7215	DP690-16	68.515	48.857			0.75573	0.86669	NaN	1	0	Median	32480000	18248000	14232000	2922	2118	2740	5882	14398	14398		1	9606
EAQRDYLDFLDDEEDQGIYQSK	1	1	Unmodified	2676.1827	0.18273457	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	11	0											1						19.918	19.918	3	5.8184E-20	16492	DP690-11	191.44	182.87			0.91894	1.1255	NaN	1	0	Median	51428000	27141000	24287000	2923	581	2741	5883	14399;14400;14401	14400		3	9606
EAQSSQATPVQTSQPDSSNIVK	1	0	Unmodified	2301.1084	0.10844742	1634	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	10	0										1							13.423	13.423	2	5.2665E-06	7192	DP690-10	161.49	121.02			NaN	NaN	NaN	0	0	Median	0	0	0	2924	1634	2742	5884	14402	14402		1	9606
EAQTLDSQIQETSI	0	0	Unmodified	1561.7471	0.74714594	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10	0										2							18.636	18.636	2	0.000273	14693	DP690-10	145.99	99.986			NaN	NaN	NaN	0	0	Median	0	0	0	2925	604	2743	5885;5886	14403;14404;14405	14404		3	9606
EAQTSFLHLGYLPNQLFR	0	1	Unmodified	2133.1007	0.10072368	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	7.67	3.4			1						1		1						21.075	21.075	3	4.7272E-07	18014	DP690-11	139.65	139.65			0.68481	0.80976	2.6661	3	0	Median	147650000	86964000	60689000	2926	1768	2744	5887;5888;5889	14406;14407;14408;14409;14410;14411;14412;14413;14414;14415	14406		10	9606
EAQVQYPLQTFAIGMEDSPDLLAAR	0	1	Oxidation (M)	2778.3534	0.35344549	418	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	1	0	4	0				1													21.921	21.921	2	0.0087785	16845	DP690-4	85.988	64.755			NaN	NaN	NaN	0	0	Median	0	0	0	2927	418	2745	5890	14416	14416	472	1	9606
EAQVSAQHLEVHLK	1	0	Unmodified	1587.8369	0.83690442	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	10	0										1							12.863	12.863	3	0.0078821	6429	DP690-10	67.846	53.618			0.70299	0.86831	NaN	1	0	Median	141570000	82610000	58957000	2928	106	2746	5891	14417	14417		1	9606
EAQYYAIGPLLEQLENMQPLKGEK	2	0	Oxidation (M)	2777.3946	0.39458202	1898	Q96MP8	KCTD7	BTB/POZ domain-containing protein KCTD7	yes	yes	0	1	1	7	0							1										22.06	22.06	3	0.00038578	16943	DP690-7	78.378	62.068			0.74324	0.79464	NaN	1	0	Median	4801100	2848900	1952200	2929	1898	2747	5892	14418;14419;14420	14418	2439	3	9606
EASDPQPEEADGGLK	1	0	Unmodified	1541.6845	0.68454569	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	10.9	3.94						2	1							3	1		12.23	12.23	2	1.4622E-15	5245	DP690-14	254.07	218.58			0.66515	0.77196	2.408	4	0	Median	661960000	375240000	286720000	2930	864	2748	5893;5894;5895;5896;5897;5898;5899	14421;14422;14423;14424;14425;14426;14427;14428;14429;14430;14431;14432;14433;14434;14435;14436;14437;14438	14425		18	9606
EASEEELGLVHSPEYVSLVR	0	1	Unmodified	2242.1117	0.11174188	1810	Q969S8	HDAC10	Histone deacetylase 10	yes	yes	0	0	0	4	0				1													18.36	18.36	3	1.7041E-05	12766	DP690-4	122.29	102.57			0.68599	0.78124	NaN	1	0	Median	23758000	12633000	11124000	2931	1810	2749	5900	14439;14440;14441;14442;14443	14441		5	9606
EASFEYLQNEGER	0	1	Unmodified	1570.69	0.68996541	1179	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	0	0	2	0		1															16.087	16.087	2	3.527E-08	9004	DP690-2	201.09	171.42			1.2286	1.2855	NaN	1	0	Median	7593400	3553400	4040000	2932	1179	2750	5901	14444;14445;14446;14447	14446		4	9606
EASPLQSLLEVLGLLGGVIMMVLIAHLE	0	0	Unmodified	2944.6381	0.63812353	1769	Q92504	SLC39A7	Zinc transporter SLC39A7	yes	yes	0	0	0	13	0													1				30.532	30.532	2	1.0715E-26	25682	DP690-13	178.02	161.28			NaN	NaN	NaN	0	0	Median	0	0	0	2933	1769	2751	5902	14448;14449	14449		2	9606
EASSTQDTGKLPVK	2	0	Unmodified	1459.7518	0.75183739	719	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	1	5	0					1												10.534	10.534	3	0.047558	2991	DP690-5	50.088	30.877			0.75567	0.73719	NaN	1	0	Median	47772000	27675000	20097000	2934	719	2752	5903	14450	14450		1	9606
EATADDLIK	1	0	Unmodified	974.49204	0.49204087	1355	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	3	0			1														13.852	13.852	2	0.041072	7163	DP690-3	70.256	19.197			1.4446	1.5485	NaN	1	0	Median	21475000	6744400	14731000	2935	1355	2753	5904	14451	14451		1	9606
EATAGNPGGQTVR	0	1	Unmodified	1256.6109	0.61092723	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															10.348	10.348	2	4.726E-06	2360	DP690-2	192.44	146.76			1.2052	1.2554	NaN	1	0	Median	30900000	13839000	17061000	2936	602	2754	5905	14452;14453;14454	14453		3	9606
EATDPRPCEVENAVESWR	0	2	Unmodified	2143.9593	0.95928076	768	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	1	14	0														1			17.605	17.605	3	0.0010005	12533	DP690-14	78.95	60.166			0.8672	1.0191	NaN	1	0	Median	92685000	53473000	39212000	2937	768	2755	5906	14455;14456	14455		2	9606
EATGHFQESEPFSHIDPEESEETR	0	1	Unmodified	2787.1896	0.18961086	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	3	0			1														15.272	15.272	4	0.034909	9073	DP690-3	37.642	23.746			1.007	1.1446	NaN	1	0	Median	11550000	5208600	6341200	2938	1311	2756	5907	14457;14458	14458		2	9606
EATHSSGFSGSSASVASTSSIK	1	0	Unmodified	2083.9658	0.96580592	211	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	3	0			1														12.622	12.622	3	0.00037788	5453	DP690-3	88.872	65.645			0.92927	0.98092	NaN	1	0	Median	8673100	5111700	3561400	2939	211	2757	5908	14459;14460;14461;14462	14459		4	9606
EATNPPVIQEEKPK	2	0	Unmodified	1578.8253	0.82533668	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	1	4	0				3													11.249	11.249	2;3	0.0021151	3654	DP690-4	84.468	62.655			0.72233	0.7376	7.1997	3	0	Median	63354000	37566000	25788000	2940	623	2758	5909;5910;5911	14463;14464;14465;14466;14467;14468;14469	14465		7	9606
EATPVVHETEPESGSQPR	0	1	Unmodified	1948.9126	0.91264814	2495	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	9.5	0.5									1	1							11.14	11.14	3	0.00016629	3525	DP690-9	102.36	83.782			0.70145	0.87631	NaN	1	0	Median	20420000	18800000	1620500	2941	2495	2759	5912;5913	14470;14471;14472;14473	14473		4	9606
EATQILSVPK	1	0	Unmodified	1084.6128	0.61282471	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	11	0											1						15.124	15.124	2	0.013978	9576	DP690-11	78.098	54.329			0.88185	1.0502	NaN	1	0	Median	105750000	59790000	45961000	2942	723	2760	5914	14474	14474		1	9606
EATTDFTVDSRPLTQVGGDHIK	1	1	Unmodified	2386.1765	0.1764674	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										3							15.633	15.633	3;4	0.0018312	10431	DP690-10	66.702	53.247			0.72479	0.80865	7.7918	2	0	Median	1079500000	625080000	454440000	2943	250	2761	5915;5916;5917	14475;14476;14477;14478;14479	14476		5	9606
EATTEFSVDAR	0	1	Unmodified	1224.5622	0.5622457	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8.5	3.91		1							1		1	1					14.199	14.199	2	4.5843E-06	8201	DP690-11	195.57	154.15			0.83467	0.94779	10.669	4	0	Median	469480000	255770000	213710000	2944	549	2762	5918;5919;5920;5921	14480;14481;14482;14483;14484;14485;14486;14487;14488;14489;14490;14491;14492	14480		13	9606
EAVAMESYAK	1	0	Unmodified	1097.5063	0.50631073	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	4	0				1													13.186	13.186	2	0.011209	6164	DP690-4	81.972	37.219			1.354	1.4753	NaN	1	0	Median	10660000	4695000	5965200	2945	1044	2763	5922	14493;14494	14493		2	9606
EAVGDLLDAFK	1	0	Unmodified	1176.6027	0.60265396	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	7.67	4.03		1								1	1						21.51	21.51	2	2.3302E-11	18634	DP690-11	191.45	116.41			1.024	1.0112	NaN	1	0	Median	73579000	65713000	7866200	2946	1111	2764	5923;5924;5925	14495;14496;14497;14498;14499;14500;14501;14502	14497		8	9606
EAVKMLEDSQRR	1	2	Oxidation (M)	1476.7355	0.73547582	1493	Q6P474;Q6P996	PDXDC2P;PDXDC1	Putative pyridoxal-dependent decarboxylase domain-containing protein 2;Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	no	0	1	2	7	0							1										14.808	14.808	2	0.0014628	8036	DP690-7	155.84	76.643			NaN	NaN	NaN	0	0	Median	53853000	53853000	0	2947	1493	2765	5926	14503;14504	14503	2184	2	9606
EAVLAALALR	0	1	Unmodified	1025.6233	0.62332982	1725	Q8TER5	ARHGEF40	Rho guanine nucleotide exchange factor 40	yes	yes	0	0	0	2	0		1															19.235	19.235	2	0.0052066	12724	DP690-2	90.37	10.141			1.0364	1.0607	NaN	1	0	Median	1682000	688650	993400	2948	1725	2766	5927	14505	14505		1	9606
EAVQLVNTR	0	1	Unmodified	1028.5615	0.56145784	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	9	0									1								12.901	12.901	2	0.019994	5807	DP690-9	79.474	21.041			0.82088	1.0258	NaN	1	0	Median	11065000	5520900	5543800	2949	891	2767	5928	14506;14507	14507		2	9606
EAVQLVNTREEVEDLCR	0	2	Unmodified	2059.0004	0.0004172906	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	1	11	0											1						16.575	16.575	3	0.00031441	11689	DP690-11	136.14	97.558			NaN	NaN	NaN	0	0	Median	259930000	259930000	0	2950	891	2768	5929	14508;14509	14509		2	9606
EAVTEILGIEPDR	0	1	Unmodified	1440.746	0.74602373	1340	Q15631	TSN	Translin	yes	yes	0	0	0	15	0															1		19.642	19.642	2	0.0014202	14758	DP690-15	98.182	75.462			0.9564	1.1133	NaN	1	0	Median	4275800	2151000	2124800	2951	1340	2769	5930	14510;14511;14512	14511		3	9606
EAVTEILGIEPDREK	1	1	Unmodified	1697.8836	0.88357984	1340	Q15631	TSN	Translin	yes	yes	0	0	1	12.3	3.77							1								2		17.551	17.551	2;3	9.6207E-15	12105	DP690-15	248.21	203.64			0.8169	0.85556	10.815	3	0	Plateau	146880000	82705000	64174000	2952	1340	2770	5931;5932;5933	14513;14514;14515;14516;14517;14518;14519;14520	14514		8	9606
EAVVNTQELLDLLVK	1	0	Unmodified	1682.9455	0.94545182	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	9.5	0.5									1	1							24.054	24.054	2	6.4628E-16	22017	DP690-10	230.95	167.26			0.81042	0.98388	9.888	2	0	Median	13789000	7613700	6175800	2953	1492	2771	5934;5935	14521;14522;14523;14524;14525;14526;14527	14522		7	9606
EAYPDHTQFEK	1	0	Unmodified	1363.6044	0.60444487	2285	Q9P016	THYN1	Thymocyte nuclear protein 1	yes	yes	0	0	0	15	0															2		11.792	11.792	2;3	0.00018097	4413	DP690-15	126.31	102.79			0.63644	0.74255	19.242	2	0	Median	63814000	37077000	26737000	2954	2285	2772	5936;5937	14528;14529;14530;14531;14532;14533;14534	14532		7	9606
EAYPEEAYIADLDAK	1	0	Unmodified	1696.7832	0.7831971	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	7	4			1								1						19.2	19.2	2	0.0002316	15464	DP690-11	116.03	92.648			0.78704	0.89239	8.7518	2	0	Median	84070000	48619000	35451000	2955	873	2773	5938;5939	14535;14536;14537;14538;14539;14540;14541;14542	14535		8	9606
EAYPGDVFYLHSR	0	1	Unmodified	1552.731	0.73104237	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	12.7	0.471												1	2				16.742	16.742	2;3	3.6049E-06	11370	DP690-12	187.78	162.55			0.71068	0.80706	7.0985	2	0	Median	473120000	249110000	224000000	2956	585	2774	5940;5941;5942	14543;14544;14545;14546;14547;14548;14549;14550;14551;14552	14544		10	9606
EAYTAVVYHNR	0	1	Unmodified	1321.6415	0.64149908	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	7.33	3.77		1								2							12.494	12.494	2	5.1614E-07	5840	DP690-10	172.25	116.88			0.94678	0.96696	NaN	1	0	Median	38426000	37010000	1415600	2957	1901	2775	5943;5944;5945	14553;14554;14555;14556;14557;14558	14553		6	9606
ECFVCTACR	0	1	Unmodified	1201.4678	0.46783351	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	10	4						1								1			13.032	13.032	2	0.00015417	5643	DP690-6	166.68	132.88			1.0362	1.1564	6.4509	2	0	Median	364780000	177500000	187280000	2958	1258	2776	5946;5947	14559;14560;14561;14562;14563;14564;14565;14566	14564		8	9606
ECGVGVIVTPEQIEEAVEAAINR	0	1	Unmodified	2482.2374	0.2373531	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	11	0											1						26.196	26.196	2	2.5311E-24	24169	DP690-11	210.34	187.53			0.70822	0.84819	NaN	1	0	Median	3115300	1833100	1282200	2959	770	2777	5948	14567;14568;14569;14570;14571	14568		5	9606
ECIQEPSSVSQTR	0	1	Unmodified	1519.6937	0.69367058	765	P46939	UTRN	Utrophin	yes	yes	0	0	0	10	0										1							12.433	12.433	2	0.00019106	5732	DP690-10	149.94	93.311			1.6464	2.0586	NaN	1	0	Median	33724000	14595000	19129000	2960	765	2778	5949	14572;14573	14573		2	9606
ECLPLIIFLR	0	1	Unmodified	1272.7264	0.72641468	986	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	15	0															1		23.446	23.446	2	0.00073817	18755	DP690-15	111.82	68.569			0.93279	1.0967	NaN	1	0	Median	1736800	915300	821510	2961	986	2779	5950	14574;14575;14576;14577	14576		4	9606
ECPEGHVVTYTPMAPGNYLIAIK	1	0	Oxidation (M)	2575.2451	0.24508101	1270	Q14315	FLNC	Filamin-C	yes	yes	0	1	0	6	4		1								1							18.31	18.31	3	0.00021814	14296	DP690-10	107.02	107.02			0.78948	0.87917	6.53	2	0	Median	141730000	82975000	58759000	2962	1270	2780	5951;5952	14578;14579;14580;14581;14582;14583;14584;14585	14578	1945	8	9606
ECPSDECGAGVFMASHFDR	0	1	Oxidation (M)	2186.8456	0.84557291	1009	P62979;A0A2R8Y422	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	no	0	1	0	16	0																3	15.341	15.341	2;3	7.5543E-10	8934	DP690-16	146.88	143.47			0.87522	0.96022	NaN	1	0	Median	109850000	55543000	54312000	2963	1009	2781	5953;5954;5955	14586;14587;14588;14589;14590;14591	14588	1534	6	9606
ECREPELGLEELLR	0	2	Unmodified	1741.8669	0.86688392	2274	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	1	6	0						1											19.441	19.441	3	0.037743	13359	DP690-6	67.846	37.739			NaN	NaN	NaN	0	0	Median	1786600	1786600	0	2964	2274	2782	5956	14592	14592		1	9606
ECSPWMSDFK	1	0	Unmodified	1285.5107	0.51074418	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								17.828	17.828	2	0.016536	12175	DP690-9	75.378	56.4			0.71209	0.90502	NaN	1	0	Median	7800400	4607000	3193400	2965	1046	2783	5957	14593;14594	14593		2	9606
ECSPWMSDFKVEFLR	1	1	Oxidation (M)	1945.8703	0.87025474	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	9	0									1								19.638	19.638	3	0.011628	14493	DP690-9	60.631	39.803			0.81358	0.94361	NaN	1	0	Median	15909000	8355100	7553800	2966	1046	2784	5958	14595	14595	1594	1	9606
ECSPWMSDFKVEFLR	1	1	Unmodified	1929.8753	0.87534012	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								20.775	20.775	3	0.00012449	15800	DP690-9	112.02	87.669			0.84099	0.97539	NaN	1	0	Median	5424100	2906200	2517800	2967	1046	2784	5959	14596;14597	14596		2	9606
ECVLPGGETAGDMGK	1	0	Oxidation (M)	1535.6596	0.65959326	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	1	0	7	4			1								1						13.372	13.372	2	0.0014657	6445	DP690-3	100.09	84.709			0.81238	0.9271	9.8395	2	0	Median	86365000	47177000	39188000	2968	736	2785	5960;5961	14598;14599;14600;14601;14602;14603;14604;14605;14606	14602	1083	9	9606
ECVLPGGETAGDMGK	1	0	Unmodified	1519.6647	0.66467864	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	11	0											1						14.855	14.855	2	0.00010133	9172	DP690-11	153.34	122.77			NaN	NaN	NaN	0	0	Median	47945000	0	47945000	2969	736	2785	5962	14607;14608	14607		2	9606
EDAGDNDDTEGAIGVR	0	1	Unmodified	1632.6863	0.6863366	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	13	0													1				13.616	13.616	2	5.4655E-09	6787	DP690-13	188.27	152.77			0.83784	1.022	NaN	1	0	Median	40540000	22366000	18174000	2970	2090	2786	5963	14609;14610;14611;14612	14609		4	9606
EDAGWYTVSAK	1	0	Unmodified	1225.5615	0.56151742	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	11	0											3						15.684	15.684	2	0.00017777	10217	DP690-11	157.99	55.932			0.83102	0.90123	NaN	1	0	Median	381430000	190050000	191380000	2971	1758	2787	5964;5965;5966	14613;14614;14615;14616;14617;14618	14615		6	9606
EDAPIGPHLQSMPSEQIR	0	1	Oxidation (M)	2019.9684	0.96838888	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	1	0	6	4		1								1							14.145	14.145	3	0.0046295	8263	DP690-10	67.685	49.594			0.72719	0.82273	3.2166	2	0	Median	112170000	54555000	57614000	2972	1252	2788	5967;5968	14619;14620;14621	14619	1896	3	9606
EDAVLYLLEIPK	1	0	Unmodified	1401.7755	0.77553294	2329	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	0	10	0										2							23.031	23.031	2	0.00032506	20764	DP690-10	117.71	74.055			1.2708	1.5403	NaN	1	0	Median	6912300	2830200	4082100	2973	2329	2789	5969;5970	14622;14623;14624	14623		3	9606
EDDRETLVSQCR	0	2	Unmodified	1506.6733	0.67326949	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	11	1.91									1	2	2				1		11.627	11.627	2;3	0.00045574	4697	DP690-10	141.89	112.12			0.88396	1.0652	13.58	5	0	Median	352090000	171850000	180230000	2974	2190	2790	5971;5972;5973;5974;5975;5976	14625;14626;14627;14628;14629;14630;14631;14632;14633;14634;14635;14636;14637	14627		13	9606
EDDRVAIHEAMEQQTISIAK	1	1	Unmodified	2283.1165	0.11650968	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	11	0											1						16.039	16.039	3	1.4863E-06	10960	DP690-11	127.49	112.25			0.78777	0.87252	NaN	1	0	Median	216790000	119400000	97387000	2975	652	2791	5977	14638;14639;14640	14639		3	9606
EDDRVAIHEAMEQQTISIAK	1	1	Oxidation (M)	2299.1114	0.1114243	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	1	6	3			1						1								14.365	14.365	3	7.2015E-05	7696	DP690-3	109.03	84.983			0.81296	0.92203	3.2499	2	0	Median	38194000	18866000	19328000	2976	652	2791	5978;5979	14641;14642;14643;14644;14645;14646	14643	912	6	9606
EDENSWFNLFVIHQNR	0	1	Unmodified	2046.9548	0.95478773	815	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	11	0											1						21.73	21.73	3	0.07736	19055	DP690-11	36.345	20.163			0.87232	1.0627	NaN	1	0	Median	18385000	11057000	7328200	2977	815	2792	5980	14647	14647		1	9606
EDFTLLDFINAVK	1	0	Unmodified	1523.7872	0.78716026	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			2														25.496	25.496	2	0.0025341	21103	DP690-3	125.68	62.859			NaN	NaN	NaN	0	0	Median	0	0	0	2978	5	2793	5981;5982	14648;14649	14649		2	9606
EDGLAQQQTQLNLR	0	1	Unmodified	1612.8169	0.81689726	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.43	1.18	2	2	1	2													15.269	15.269	2	2.2142E-15	8051	DP690-2	289.22	289.22			0.88678	0.9204	2.4177	3	0	Plateau	133980000	71717000	62263000	2979	789	2794	5983;5984;5985;5986;5987;5988;5989	14650;14651;14652;14653;14654;14655;14656;14657;14658;14659;14660;14661;14662	14653		13	9606
EDGMVPFVFVGTK	1	0	Oxidation (M)	1440.6959	0.69590241	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	1	0	10.4	3.2				1								4					19.8	19.8	2	8.6223E-05	14835	DP690-12	134.3	110.22			0.69871	0.84577	7.2938	3	0	Plateau	152210000	106420000	45790000	2980	829	2795	5990;5991;5992;5993;5994	14663;14664;14665;14666;14667;14668;14669;14670;14671;14672;14673	14663	1257	11	9606
EDGMVPFVFVGTK	1	0	Unmodified	1424.701	0.70098779	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	12	0												1					20.935	20.935	2	2.7278E-05	17045	DP690-12	168.22	134.01			0.76026	0.89398	NaN	1	0	Median	88866000	49001000	39865000	2981	829	2795	5995	14674;14675;14676;14677	14674		4	9606
EDGNEEDKENQGDETQGQQPPQR	1	1	Unmodified	2627.0968	0.096773109	1025	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	12.6	3.66				1									3	1	1	1	10.347	10.347	2;3	1.7134E-42	2525	DP690-14	252.58	245.86			0.76415	0.86064	17.154	5	0	Median	1449000000	825930000	623040000	2982	1025	2796	5996;5997;5998;5999;6000;6001;6002	14678;14679;14680;14681;14682;14683;14684;14685;14686;14687;14688;14689;14690;14691;14692;14693;14694;14695	14686		18	9606
EDGNEEDKENQGDETQGQQPPQRR	1	2	Unmodified	2783.1979	0.19788414	1025	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	2	13.5	0.5													2	2			10.157	10.157	3;4	3.6182E-10	2336	DP690-13	152.13	142.75			0.91161	1.0566	0.85961	3	0	Median	188230000	96758000	91469000	2983	1025	2797	6003;6004;6005;6006	14696;14697;14698;14699;14700;14701;14702;14703;14704;14705;14706;14707;14708;14709	14703		14	9606
EDGNILGHK	1	0	Unmodified	981.48796	0.48795855	57	CON__Q9U6Y5			yes	yes	0	0	0	7	0							2										26.554	26.554	2	0.034524	3030	DP690-7	93.195	41.341		+	NaN	NaN	NaN	0	0	Median	23033000	23033000	0	2984	57	2798	6007;6008	14710;14711	14710		2	
EDGNILGHKLEYNYNSHNVYIMADK	2	0	Unmodified	2936.3763	0.3763062	57	CON__Q9U6Y5			yes	yes	0	0	1	5	0					1												16.745	16.745	4	0.042933	10292	DP690-5	52.91	33.586		+	NaN	NaN	NaN	0	0	Median	82769000	0	82769000	2985	57	2799	6009	14712	14712		1	
EDGNILGHKLEYNYNSHNVYIMADK	2	0	Oxidation (M)	2952.3712	0.37122082	57	CON__Q9U6Y5			yes	yes	0	1	1	7.5	0.5							1	1									16.029	16.029	4	0.010274	9308	DP690-8	51.577	34.42		+	0.41254	0.48271	NaN	1	0	Median	25923000	3543000	22380000	2986	57	2799	6010;6011	14713;14714	14714	61	2	
EDGNILGHKLEYNYNSHNVYIMADKQK	3	0	Unmodified	3192.5298	0.52984672	57	CON__Q9U6Y5			yes	yes	0	0	2	5	0					2												15.719	15.719	4;5	0.013863	9037	DP690-5	59.674	41.583		+	NaN	NaN	NaN	0	0	Median	137850000	0	137850000	2987	57	2800	6012;6013	14715;14716;14717	14717		3	
EDGSEVGVGGAQVTGSNTR	0	1	Unmodified	1818.8344	0.83439782	1229	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	7	4			1								1						13.06	13.06	2	1.5194E-30	6015	DP690-3	246.31	221.46			0.93673	1.0675	NaN	1	0	Median	12591000	6385100	6206100	2988	1229	2801	6014;6015	14718;14719;14720;14721;14722	14721		5	9606
EDGSGDRGDGPFR	0	2	Unmodified	1363.5753	0.57527001	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	1	7	4			1								1						10.876	10.876	3	0.00084609	3102	DP690-3	92.247	84.881			1.4365	1.6222	78.563	2	0	Median	57621000	27778000	29843000	2989	480	2802	6016;6017	14723;14724;14725	14724		3	9606
EDILVTLNDLIK	1	0	Unmodified	1384.7813	0.7813466	1754	Q8WWK9	CKAP2	Cytoskeleton-associated protein 2	yes	yes	0	0	0	11	0											1						23.817	23.817	2	0.040426	21523	DP690-11	63.694	21.504			0.99585	1.1784	NaN	1	0	Median	3071000	1724900	1346100	2990	1754	2803	6018	14726;14727	14726		2	9606
EDINAIEMEEDKR	1	1	Unmodified	1590.7196	0.71955098	803	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	1	11	0											2						14.228	14.228	2	0.00038726	8267	DP690-11	152.54	122.76			0.74989	0.94108	NaN	1	0	Median	30069000	15040000	15029000	2991	803	2804	6019;6020	14728;14729	14728		2	9606
EDIQSVMTEIR	0	1	Unmodified	1319.6391	0.63911582	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	7	4			1								1						18.836	18.836	2	0.008086	14874	DP690-11	111.46	62.894			NaN	NaN	NaN	0	0	Median	3892500	0	3892500	2992	877	2805	6021;6022	14730;14731	14730		2	9606
EDIQSVMTEIR	0	1	Oxidation (M)	1335.634	0.63403044	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	0	3	0			1														15.004	15.004	2	0.0059	8593	DP690-3	107.79	50.74			NaN	NaN	NaN	0	0	Median	11911000	0	11911000	2993	877	2805	6023	14732	14732	1326	1	9606
EDITEPAICALR	0	1	Unmodified	1386.6813	0.68131498	658	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	10	0										1							10.403	10.403	3	0.057013	2748	DP690-10	53.237	16.553			0.38904	0.43328	NaN	1	0	Median	529970000	377650000	152320000	2994	658	2806	6024	14733	14733		1	9606
EDKSPETGTAGGSSTASYSAGR	1	1	Unmodified	2114.9352	0.93523408	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	1	9	0									1								10.573	10.573	3	0.00090753	2900	DP690-9	74.579	60.62			0.60239	0.69866	NaN	1	0	Median	8008700	5035300	2973400	2995	1696	2807	6025	14734;14735	14734		2	9606
EDLLQEYTEQR	0	1	Unmodified	1422.6627	0.66268803	323	O95425	SVIL	Supervillin	yes	yes	0	0	0	10	0										1							18.467	18.467	2	0.00025528	14503	DP690-10	164.97	93.622			1.0575	1.3051	NaN	1	0	Median	127520000	70316000	57207000	2996	323	2808	6026	14736;14737	14737		2	9606
EDLMGLAIGTHGSNIQQAR	0	1	Oxidation (M)	2025.9902	0.99018696	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	1	0	11.8	0.748											2	2	1				15.7	15.7	3	2.4503E-17	9187	DP690-12	201.57	182.08			0.82386	0.95934	4.3345	2	0	Median	376920000	236870000	140050000	2997	829	2809	6027;6028;6029;6030;6031	14738;14739;14740;14741;14742;14743;14744;14745;14746;14747	14741	1258	10	9606
EDLMGLAIGTHGSNIQQAR	0	1	Unmodified	2009.9953	0.99527233	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	12	0												3					17.304	17.304	2;3	1.372E-37	12252	DP690-12	260.5	206.48			0.9244	1.0747	2.676	2	0	Median	226020000	117060000	108950000	2998	829	2809	6032;6033;6034	14748;14749;14750;14751;14752;14753;14754	14749		7	9606
EDLNCQEEEDPMNK	1	0	Oxidation (M)	1765.6771	0.67709382	277	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	1	0	14	0														1			11.573	11.573	2	3.7066E-05	4175	DP690-14	155.33	129.22			1.1005	1.2965	NaN	1	0	Median	6360200	3368200	2992000	2999	277	2810	6035	14755;14756;14757;14758	14757	297	4	9606
EDLQLDKPASGVK	2	0	Unmodified	1398.7355	0.73545904	1041	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	11	0											1						12.607	12.607	2	0.0004357	5874	DP690-11	160.72	99.812			0.69127	0.83555	NaN	1	0	Median	19679000	11377000	8302100	3000	1041	2811	6036	14759;14760	14759		2	9606
EDLQPVQIQSLETLGVLAR	0	1	Unmodified	2108.1477	0.14773345	1728	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	3	0			1														22.548	22.548	2	0.0072544	18131	DP690-3	113.53	77.933			NaN	NaN	NaN	0	0	Median	0	0	0	3001	1728	2812	6037	14761	14761		1	9606
EDLRLPEGDLGK	1	1	Unmodified	1340.6936	0.69359423	1021	P63241	EIF5A	Eukaryotic translation initiation factor 5A-1	yes	yes	0	0	1	12	4								1								1	15.255	15.255	3	0.00108	8906	DP690-16	81.92	53.715			0.65758	0.72962	5.5116	2	0	Median	119710000	67364000	52349000	3002	1021	2813	6038;6039	14762;14763	14762		2	9606
EDLTEIRDMLLANK	1	1	Oxidation (M)	1675.8451	0.84508585	385	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	1	1	14	0														1			18.808	18.808	3	0.013525	14079	DP690-14	61.419	30.545			0.73993	0.92088	NaN	1	0	Median	45030000	21383000	23647000	3003	385	2814	6040	14764;14765	14765	407	2	9606
EDLVVAPAGITLK	1	0	Unmodified	1324.7602	0.76021723	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	4	0				1													18.754	18.754	2	0.00774	13298	DP690-4	91.469	72.863			1.0609	1.1653	NaN	1	0	Median	14169000	6116800	8052200	3004	474	2815	6041	14766	14766		1	9606
EDLYLKPIQR	1	1	Unmodified	1273.703	0.7030367	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	7.33	4.03			2	1							2	1					14.331	14.331	2;3	0.00034535	7750	DP690-3	141.52	108.26			0.95161	1.0703	14.786	6	0	Median	514570000	283760000	230810000	3005	483	2816	6042;6043;6044;6045;6046;6047	14767;14768;14769;14770;14771;14772;14773;14774;14775;14776;14777;14778;14779	14773		13	9606
EDMESVLDK	1	0	Unmodified	1064.4696	0.46959087	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	12	0												1					15.64	15.64	2	0.074762	9905	DP690-12	85.731	31.119			NaN	NaN	NaN	0	0	Median	0	0	0	3006	417	2817	6048	14780	14780		1	9606
EDMSGYTIYDTSTDR	0	1	Oxidation (M)	1768.7098	0.70977416	1821	Q96AZ6	ISG20	Interferon-stimulated gene 20 kDa protein	yes	yes	0	1	0	16	0																2	15.343	15.343	2	0.00024701	9043	DP690-16	142.08	97.767			NaN	NaN	NaN	0	0	Median	3096800	3096800	0	3007	1821	2818	6049;6050	14781;14782	14781	2402	2	9606
EDPFVFIPEDDPLFPPIEK	1	0	Unmodified	2243.1038	0.10380295	1141	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	7	4			1								1						24.487	24.487	2	0.00043026	20198	DP690-3	124.48	86.517			NaN	NaN	NaN	0	0	Median	704150	0	704150	3008	1141	2819	6051;6052	14783;14784;14785	14785		3	9606
EDQLLCTDCYSNEYSSK	1	0	Unmodified	2110.846	0.84595006	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	11.7	4.03						1								1	1		16.455	16.455	2	2.8736E-40	10867	DP690-14	327.62	327.62			1.0399	1.1894	7.7103	3	0	Plateau	307400000	149300000	158100000	3009	1258	2820	6053;6054;6055	14786;14787;14788;14789;14790;14791;14792;14793;14794;14795;14796;14797	14789		12	9606
EDQSILCTGESGAGK	1	0	Unmodified	1550.6883	0.68825085	668;669;1543	P35579;Q7Z406;P35580	MYH9;MYH14;MYH10	Myosin-9;Myosin-14;Myosin-10	no	no	0	0	0	2	0		2															14.061	14.061	2	2.7418000000000004E-25	6539	DP690-2	211.63	163.03			NaN	NaN	NaN	0	0	Median	21485000	10070000	11415000	3010	668;1543;669	2821	6056;6057	14798;14799;14800;14801;14802	14799		5	9606
EDQTEYLEER	0	1	Unmodified	1310.5626	0.56263964	416;409	P07900;Q58FF6;P08238;Q58FF7	HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	no	no	0	0	0	3.5	0.5			1	1													13.924	13.924	2	6.0075E-05	7211	DP690-3	168.26	111.54			1.0591	1.1512	23.519	2	0	Median	246470000	125150000	121320000	3011	409;416	2822	6058;6059	14803;14804;14805;14806;14807;14808	14806		6	9606
EDSAYGSQSVEQEAEK	1	0	Unmodified	1755.7435	0.74351713	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	3	0			3														13.259	13.259	2	5.2377E-07	6316	DP690-3	185.25	155.32			NaN	NaN	NaN	0	0	Median	2641500	0	2641500	3012	1076	2823	6060;6061;6062	14809;14810;14811;14812	14811		4	9606
EDSNLTLQEK	1	0	Unmodified	1175.567	0.56699673	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	2	0		1															12.635	12.635	2	0.00067415	4906	DP690-2	113.66	66.471			1.4166	1.4202	NaN	1	0	Median	4699000	1859900	2839000	3013	766	2824	6063	14813;14814;14815;14816;14817	14816		5	9606
EDSSSAEFLEK	1	0	Unmodified	1240.5459	0.54592694	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	4	0				1													14.391	14.391	2	0.0019091	7734	DP690-4	135.43	74.951			NaN	NaN	NaN	0	0	Median	10828000	10828000	0	3014	1227	2825	6064	14818	14818		1	9606
EDTEEHHLRDYFEQYGK	1	1	Unmodified	2194.9556	0.95557559	437	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	14	0														1			15.847	15.847	3	1.0149E-07	9995	DP690-14	152.16	132.76			0.96017	1.1462	NaN	1	0	Median	82467000	43176000	39291000	3015	437	2826	6065	14819;14820;14821;14822;14823	14819		5	9606
EDTESLEIFQNEVAR	0	1	Unmodified	1778.8323	0.83227255	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	7.25	3.34					2	1							1				19.219	19.219	2	1.3716E-150	14435	DP690-13	350.4	291.7			0.79382	0.86076	3.9323	2	0	Median	406420000	242920000	163500000	3016	1989	2827	6066;6067;6068;6069	14824;14825;14826;14827;14828;14829	14824		6	9606
EDTQTLQSLQK	1	0	Unmodified	1289.6463	0.64630969	781	P48681	NES	Nestin	yes	yes	0	0	0	10.5	0.5										1	1						13.335	13.335	2	2.7073E-06	7046	DP690-10	205.12	141.7			0.81491	0.97971	16.883	2	0	Median	297180000	155860000	141320000	3017	781	2828	6070;6071	14830;14831;14832;14833;14834;14835	14832		6	9606
EDVEVAESPLR	0	1	Unmodified	1242.6092	0.6091959	1942	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	11	0											1						15.032	15.032	2	0.00040681	9451	DP690-11	116.52	93.164			0.70596	0.84871	NaN	1	0	Median	25702000	15560000	10142000	3018	1942	2829	6072	14836	14836		1	9606
EDVFVHQTAIK	1	0	Unmodified	1285.6667	0.6666512	1025;507	P16989;Q9Y2T7;P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	no	no	0	0	0	13	0													1				13.363	13.363	2	2.5216E-06	6487	DP690-13	211.64	137.98			0.94047	1.0858	NaN	1	0	Median	73972000	41211000	32761000	3019	507;1025	2830	6073	14837	14837		1	9606
EDVLTLLLPVMGDSK	1	0	Oxidation (M)	1644.8644	0.86442431	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	1	0	3	0			1														23.044	23.044	2	0.00029513	18655	DP690-3	118.77	83.588			1.4087	1.4875	NaN	1	0	Median	8790800	3718300	5072600	3020	1190	2831	6074	14838;14839	14839	1838	2	9606
EEAENTLQSFR	0	1	Unmodified	1322.6103	0.61025853	424	P08670	VIM	Vimentin	yes	yes	0	0	0	11.2	3.66				1								1	2	1			15.013	15.013	2	1.4492E-06	8707	DP690-13	217.64	153.22			0.83579	0.87563	14.767	5	0	Median	3157099999.9999995	1707299999.9999998	1449800000	3021	424	2832	6075;6076;6077;6078;6079	14840;14841;14842;14843;14844;14845;14846;14847;14848;14849;14850;14851;14852;14853	14848		14	9606
EEAGGEAAAAAAAER	0	1	Unmodified	1372.6219	0.62188585	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	10	0										1							12.728	12.728	2	0.00066096	6198	DP690-10	104.24	81.524			0.88408	1.1046	NaN	1	0	Median	64390000	33993000	30397000	3022	103	2833	6080	14854;14855	14855		2	9606
EEALTALGK	1	0	Unmodified	930.50221	0.50221163	1810	Q969S8	HDAC10	Histone deacetylase 10	yes	yes	0	0	0	4	0				1													14.04	14.04	2	0.001342	7246	DP690-4	122.18	58.87			0.78107	0.84008	NaN	1	0	Median	37339000	21987000	15352000	3023	1810	2834	6081	14856;14857;14858;14859	14857		4	9606
EEAQAEIEQYR	0	1	Unmodified	1364.6208	0.62082322	247	O75348	ATP6V1G1	V-type proton ATPase subunit G 1	yes	yes	0	0	0	12	4								1								1	14.148	14.148	2	0.00010876	7154	DP690-8	133.13	90.332			0.81245	0.95725	7.6057	2	0	Median	38893000	18192000	20702000	3024	247	2835	6082;6083	14860;14861;14862;14863;14864	14863		5	9606
EEASGSSVTAEEAK	1	0	Unmodified	1393.6209	0.6208828	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	7	4			1								1						10.544	10.544	2	4.2441E-06	2805	DP690-3	181.4	152.7			1.4812	1.6571	77.391	2	0	Median	150940000	69553000	81384000	3025	480	2836	6084;6085	14865;14866;14867;14868;14869;14870;14871;14872	14869		8	9606
EEASWQQSHHQFR	0	1	Unmodified	1668.7393	0.73931564	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								10.611	10.611	3	1.9564E-05	2914	DP690-9	136.96	123.17			0.92552	1.1551	NaN	1	0	Median	15260000	7662800	7597200	3026	2217	2837	6086	14873;14874;14875;14876	14874		4	9606
EEAVLFLLDLPK	1	0	Unmodified	1385.7806	0.78061832	1132	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	10	0										1							23.598	23.598	2	0.0012326	21544	DP690-10	102.95	83.193			0.73274	0.8881	NaN	1	0	Median	6385200	3805200	2580000	3027	1132	2838	6087	14877;14878	14878		2	9606
EEDPATGTGDPPR	0	1	Unmodified	1340.5844	0.58443771	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	3	0			2														10.683	10.683	2	2.5479000000000003E-25	3059	DP690-3	223.31	130.17			1.9352	2.143	NaN	1	0	Median	68781000	51861000	16920000	3028	746	2839	6088;6089	14879;14880;14881;14882;14883	14881		5	9606
EEDSANLKPSELKK	3	0	Unmodified	1586.8152	0.81516593	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	2	10	1									1		1						10.556	10.556	3	0.00066122	2971	DP690-11	96.756	68.789			0.76057	0.82924	10.097	2	0	Median	302800000	174320000	128480000	3029	2501	2840	6090;6091	14884;14885;14886	14884		3	9606
EEEELSSQMSSFNEAMTQIR	0	1	Unmodified	2345.0151	0.015140656	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11	0											1						20.481	20.481	2	7.2274E-11	17259	DP690-11	209.22	187.16			0.98308	1.2003	NaN	1	0	Median	17482000	8975900	8506100	3030	1950	2841	6092	14887	14887		1	9606
EEEELSSQMSSFNEAMTQIR	0	1	Oxidation (M)	2361.0101	0.010055278	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	1	0	11	0											1						18.485	18.485	2	0.022813	14422	DP690-11	92.935	63.467			NaN	NaN	NaN	0	0	Median	0	0	0	3031	1950	2841	6093	14888	14888	2482	1	9606
EEEIAALVIDNGSGMCK	1	0	Acetyl (Protein N-term);Oxidation (M)	1892.8496	0.84957888	1023	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	1	0	12.2	3.07						3			2				1	13			24.101	24.101	2	3.8736E-10	19861	DP690-14	193	172.54			1.0539	1.2354	22.885	6	0	Median	197920000	72374000	125550000	3032	1023	2842	6094;6095;6096;6097;6098;6099;6100;6101;6102;6103;6104;6105;6106;6107;6108;6109;6110;6111;6112	14889;14890;14891;14892;14893;14894;14895;14896;14897;14898;14899;14900;14901;14902;14903;14904;14905;14906;14907;14908;14909;14910;14911;14912;14913;14914;14915;14916;14917;14918;14919;14920;14921;14922;14923;14924	14894	1552	36	9606
EEEIAALVIDNGSGMCK	1	0	Acetyl (Protein N-term)	1876.8547	0.85466426	1023	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	0	0	14.1	0.287														10	1		26.161	26.161	2	1.1203E-39	21313	DP690-14	317.15	295.12			0.87746	0.99888	NaN	1	0	Median	318910000	167790000	151110000	3033	1023	2842	6113;6114;6115;6116;6117;6118;6119;6120;6121;6122;6123	14925;14926;14927;14928;14929;14930;14931;14932;14933;14934;14935;14936;14937;14938;14939;14940	14929		16	9606
EEELREYQER	0	2	Unmodified	1379.6317	0.63172225	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	1	10	0										2							11.329	11.329	2;3	0.047541	4138	DP690-10	65.278	45.435			0.80117	0.95423	12.686	2	0	Median	80993000	43341000	37652000	3034	1252	2843	6124;6125	14941;14942	14941		2	9606
EEEMGEEEEVER	0	1	Oxidation (M)	1509.5777	0.57769735	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	0	10	0										1							11.204	11.204	2	0.0043805	4007	DP690-10	112.85	85.516			NaN	NaN	NaN	0	0	Median	9574500	9574500	0	3035	1297	2844	6126	14943;14944	14944	1980	2	9606
EEFASTCPDDEEIELAYEQVAK	1	0	Unmodified	2572.1163	0.11629449	79	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	7	0							1										20.767	20.767	2	2.2644E-06	15612	DP690-7	134.88	112.31			NaN	NaN	NaN	0	0	Median	2000100	0	2000100	3036	79	2845	6127	14945;14946;14947	14947		3	9606
EEGILGFFAGLVPR	0	1	Unmodified	1503.8086	0.80856441	2517	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	11.5	2.5									1					1			25.949	25.949	2	6.2195E-05	22596	DP690-14	160.53	131.57			0.6882	0.82752	12.993	2	0	Median	6703100	3697000	3006000	3037	2517	2846	6128;6129	14948;14949;14950;14951;14952;14953;14954;14955	14952		8	9606
EEGPYEVEVTYDGVPVPGSPFPLEAVAPTKPSK	2	0	Unmodified	3484.729	0.72898327	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	8.6	3.44		1							1	2		1					21.1	21.1	3	1.1981999999999999E-21	18368	DP690-10	168.77	153.32			0.43617	0.48485	12.728	4	0	Median	743420000	514270000	229160000	3038	549	2847	6130;6131;6132;6133;6134	14956;14957;14958;14959;14960;14961;14962;14963;14964;14965;14966;14967;14968;14969;14970;14971	14959		16	9606
EEIDILSDACSK	1	0	Unmodified	1378.6286	0.62861071	308	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	8	0								1									18.49	18.49	2	0.017659	11972	DP690-8	72.325	25.935			0.81355	0.92203	NaN	1	0	Median	9541900	5211800	4330000	3039	308	2848	6135	14972	14972		1	9606
EEILLACEGGTGTCVR	0	1	Unmodified	1763.8182	0.81821917	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5.36	3.11	1	1	1	1	3	1	1	1					1				16.386	16.386	2	2.2273E-75	10124	DP690-5	281.17	232.73			59.988	61.809	14.609	2	0	Median	4622000000	61069000	4560900000	3040	2071	2849	6136;6137;6138;6139;6140;6141;6142;6143;6144;6145;6146	14973;14974;14975;14976;14977;14978;14979;14980;14981;14982;14983;14984;14985;14986;14987;14988;14989;14990;14991;14992;14993;14994;14995;14996	14989		24	9606
EEIQPGDIVIIDQFIDR	0	1	Unmodified	1999.0262	0.026221336	1181	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	7	0							3										23.575	23.575	2	0.00057967	18752	DP690-7	135.79	106.49			NaN	NaN	NaN	0	0	Median	1676200	1676200	0	3041	1181	2850	6147;6148;6149	14997;14998;14999;15000;15001	14997		5	9606
EEIQSSISGVTAAYNR	0	1	Unmodified	1723.8377	0.83769228	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	6	4		1								1							16.691	16.691	2	3.2837E-22	11969	DP690-10	244	213.15			0.92605	1.0549	31.272	2	0	Median	103770000	64256000	39514000	3042	766	2851	6150;6151	15002;15003;15004;15005;15006;15007;15008	15002		7	9606
EEIVQFFSGLEIVPNGITLPVDFQGR	0	1	Unmodified	2903.5069	0.50690966	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	13	0													2				26.244	26.244	2	1.93E-06	22566	DP690-13	137.73	108.39			NaN	NaN	NaN	0	0	Median	0	0	0	3043	639	2852	6152;6153	15009;15010	15009		2	9606
EELGLIEQAYDNPHEALSR	0	1	Unmodified	2183.0495	0.049475973	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	9.33	0.471									2	1							17.949	17.949	3	0.00030711	12357	DP690-9	116.13	66.738			NaN	NaN	NaN	0	0	Median	9137400	5529400	3608000	3044	1492	2853	6154;6155;6156	15011;15012;15013;15014	15013		4	9606
EELGTVNGMTITMVGDLK	1	0	2 Oxidation (M)	1938.9278	0.9278292	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	2	0	2	0		1															17.673	17.673	2	0.015431	10934	DP690-2	68.033	45.712			0.70713	0.69929	NaN	1	0	Median	2859400	1622900	1236500	3045	602	2854	6157	15015	15015	810;811	1	9606
EELSALVAPAFAHTSQVLVDK	1	0	Unmodified	2224.1739	0.17394821	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															20.381	20.381	3	1.3021E-07	13949	DP690-2	142.88	120.89			1.3913	1.3993	NaN	1	0	Median	8325200	3520200	4805000	3046	602	2855	6158	15016;15017;15018;15019	15019		4	9606
EENAEQQALAAK	1	0	Unmodified	1300.6259	0.62590859	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										2							12.48	12.48	2	1.463E-06	5753	DP690-10	195.79	164.99			1.1303	1.3901	5.124	2	0	Median	281700000	125800000	155900000	3047	2424	2856	6159;6160	15020;15021;15022;15023;15024	15021		5	9606
EENMLEPSISLSEPLMLEEPEK	1	0	2 Oxidation (M)	2575.1921	0.19210197	1651	Q8N3K9	CMYA5	Cardiomyopathy-associated protein 5	yes	yes	0	2	0	14	0														1			25.188	25.188	2	0.038805	21740	DP690-14	54.95	35.777			0.80149	0.95004	NaN	1	0	Median	13141000	6739800	6401400	3048	1651	2857	6161	15025	15025	2277;2278	1	9606
EEPGSDSGTTAVVALIR	0	1	Unmodified	1700.8581	0.85809337	152	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	4	0				1													18.615	18.615	2	7.9326E-12	13107	DP690-4	176.18	124.75			NaN	NaN	NaN	0	0	Median	6316300	0	6316300	3049	152	2858	6162	15026;15027	15026		2	9606
EEPVSSGPEEAVGK	1	0	Unmodified	1413.6624	0.66235368	95	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	12	0												1					12.47	12.47	2	0.0014355	5478	DP690-12	94.767	79.891			0.51135	0.61908	NaN	1	0	Median	13541000	8923900	4617400	3050	95	2859	6163	15028;15029;15030	15030		3	9606
EEQIVQLLNSVQAK	1	0	Unmodified	1597.8675	0.86753585	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	11	0											2						20.385	20.385	2	2.8579E-07	17059	DP690-11	170.4	116.21			NaN	NaN	NaN	0	0	Median	14880000	14880000	0	3051	2105	2860	6164;6165	15031;15032;15033	15031		3	9606
EESAADWALYTYEDGSDDLK	1	0	Unmodified	2276.9597	0.95971749	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	0	11	0											1						21.219	21.219	2	1.433E-30	18259	DP690-11	241.76	224.19			0.77248	0.9322	NaN	1	0	Median	51126000	27898000	23227000	3052	1365	2861	6166	15034;15035;15036	15035		3	9606
EESEEEEDEDDEEEEEEEKEK	2	0	Unmodified	2641.9522	0.95224467	674	P35659	DEK	Protein DEK	yes	yes	0	0	1	13	0													1				12.011	12.011	3	1.6722E-45	4670	DP690-13	281.61	281.61			0.67565	0.7659	NaN	1	0	Median	30173000	17514000	12659000	3053	674	2862	6167	15037;15038;15039;15040;15041	15039		5	9606
EESPYCVVCFETLFANTCEECGKPIGCDCK	2	0	Unmodified	3658.4853	0.48528235	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	14	0														1			21.408	21.408	3	1.5103E-05	17396	DP690-14	89.879	87.896			0.78713	0.88468	NaN	1	0	Median	20602000	9986500	10615000	3054	1258	2863	6168	15042;15043	15042		2	9606
EETQPPVALK	1	0	Unmodified	1110.5921	0.59208927	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	13	0													1				12.966	12.966	2	0.033927	5976	DP690-13	69.598	39.095			0.72229	0.81829	NaN	1	0	Median	129780000	74793000	54985000	3055	1678	2864	6169	15044	15044		1	9606
EETQPPVALKK	2	0	Unmodified	1238.6871	0.68705229	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	13	0													1				10.667	10.667	2	0.00017084	2950	DP690-13	134.77	98.857			0.73211	0.81165	NaN	1	0	Median	145030000	82367000	62660000	3056	1678	2865	6170	15045;15046;15047;15048	15047		4	9606
EEVEDLCR	0	1	Unmodified	1048.4495	0.44952413	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						12.872	12.872	2	0.050957	6220	DP690-11	154.35	91.636			0.88129	1.0272	NaN	1	0	Median	161750000	84086000	77667000	3057	891	2866	6171	15049	15049		0	9606
EEVKLEAHIR	1	1	Unmodified	1222.667	0.66698555	2523;84	O00425;Q9Y6M1	IGF2BP3;IGF2BP2	Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2	no	no	0	0	1	12	0												1					11.245	11.245	3	0.012833	3906	DP690-12	65.627	54.414			1.0504	1.336	NaN	1	0	Median	19716000	8057600	11659000	3058	84;2523	2867	6172	15050;15051;15052	15052		3	9606
EEVMEPPLEEESLEAK	1	0	Oxidation (M)	1873.8503	0.85029038	781	P48681	NES	Nestin	yes	yes	0	1	0	10	0										2							16.368	16.368	2	4.6315E-07	11567	DP690-10	168.83	144.55			0.94952	1.1729	NaN	1	0	Median	58709000	36942000	21766000	3059	781	2868	6173;6174	15053;15054;15055;15056	15054	1160	4	9606
EEVMEPPLEEESLEAKR	1	1	Oxidation (M)	2029.9514	0.95140141	781	P48681	NES	Nestin	yes	yes	0	1	1	10	0										1							14.857	14.857	3	0.073852	9353	DP690-10	41.367	41.367			3.3432	4.1469	NaN	1	0	Median	95749000	25724000	70025000	3060	781	2869	6175	15057	15057	1160	0	9606
EEVTELLAR	0	1	Unmodified	1058.5608	0.56078914	537	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	yes	yes	0	0	0	15	0															1		16.745	16.745	2	0.00010978	11101	DP690-15	172.15	94.405			0.83629	0.96118	NaN	1	0	Median	35950000	20383000	15567000	3061	537	2870	6176	15058;15059;15060	15058		3	9606
EEVVLLTHGDSVDK	1	0	Unmodified	1539.7781	0.77805214	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	3.5	0.5			1	1													14.268	14.268	2	3.6347E-09	7576	DP690-4	202.31	158.79			1.0387	1.1353	NaN	1	0	Median	11905000	5661700	6243700	3062	813	2871	6177;6178	15061;15062;15063;15064;15065	15064		5	9606
EEYNGVIEEFLATGEK	1	0	Unmodified	1826.8574	0.85742467	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	4	0				1													21.944	21.944	2	0.00069027	16860	DP690-4	101.53	101.53			0.96369	1.0197	NaN	1	0	Median	1086400	621180	465240	3063	2116	2872	6179	15066	15066		1	9606
EEYQLVQVEQK	1	0	Unmodified	1391.6933	0.69325988	2195	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	11	0											1						15.26	15.26	2	0.07654	9757	DP690-11	79.986	34.305			NaN	NaN	NaN	0	0	Median	0	0	0	3064	2195	2873	6180	15067	15067		1	9606
EFAGEDTSDLFLEER	0	1	Unmodified	1756.7792	0.77917435	128	O14980	XPO1	Exportin-1	yes	yes	0	0	0	7	4			1								1						19.577	19.577	2	7.8677E-07	14519	DP690-3	197.73	164.54			1.142	1.3617	NaN	1	0	Median	40379000	18364000	22015000	3065	128	2874	6181;6182	15068;15069	15069		2	9606
EFALNNENYSLSNR	0	1	Unmodified	1669.7696	0.76961272	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	11.3	0.471											2	1					16.977	16.977	2	1.6132E-06	12153	DP690-11	190.57	145.21			0.47083	0.56232	NaN	1	0	Median	46994000	30132000	16862000	3066	1573	2875	6183;6184;6185	15070;15071;15072;15073	15070		4	9606
EFCENLSADCR	0	1	Unmodified	1399.5496	0.54964888	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	4	0				1													14.216	14.216	2	0.068866	7515	DP690-4	82.261	43.298			NaN	NaN	NaN	0	0	Median	0	0	0	3067	624	2876	6186	15074	15074		1	9606
EFCQQEVEPMCK	1	0	Oxidation (M)	1599.6367	0.63674933	1856	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	1	0	6	0						1											12.983	12.983	2	0.0013359	5635	DP690-6	107.45	67.582			0.74783	0.83045	NaN	1	0	Median	2942400	1801200	1141100	3068	1856	2877	6187	15075;15076;15077;15078;15079	15078	2420	5	9606
EFDLTKEEDLAALR	1	1	Unmodified	1648.8308	0.83081599	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	1	3	0			1														18.546	18.546	3	0.0091248	13364	DP690-3	68.033	39.65			0.85667	0.95011	NaN	1	0	Median	16907000	8777200	8130200	3069	203	2878	6188	15080;15081	15080		2	9606
EFEAVLTER	0	1	Unmodified	1092.5451	0.54513908	1828	Q96BQ5	CCDC127	Coiled-coil domain-containing protein 127	yes	yes	0	0	0	15	0															1		16.162	16.162	2	0.019994	10360	DP690-15	79.474	51.3			0.75727	0.87347	NaN	1	0	Median	8363800	4960700	3403100	3070	1828	2879	6189	15082	15082		1	9606
EFEEESKQPGVSEQQR	1	1	Unmodified	1905.8704	0.87044898	291	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	1	11.5	0.5											1	1					11.294	11.294	3	2.1317E-07	4083	DP690-11	156.96	109.72			0.68311	0.83209	12.315	2	0	Median	86368000	45864000	40504000	3071	291	2880	6190;6191	15083;15084;15085;15086;15087;15088;15089;15090	15088		8	9606
EFEKDKDDDEVFEK	3	0	Unmodified	1771.7788	0.77884	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	2	10	0										1							12.521	12.521	3	0.0037194	5845	DP690-10	103.11	41.577			NaN	NaN	NaN	0	0	Median	22029000	22029000	0	3072	1111	2881	6192	15091	15091		1	9606
EFFEYFGNFAFDK	1	0	Unmodified	1659.7246	0.72456001	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	12	0												1					23.051	23.051	2	7.2655E-05	19512	DP690-12	133.89	119.2			0.90924	1.1012	NaN	1	0	Median	3496900	1880300	1616600	3073	2240	2882	6193	15092;15093;15094;15095;15096	15092		5	9606
EFFLELTMGR	0	1	Oxidation (M)	1257.6064	0.60635913	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	1	0	3	0			1														20.332	20.332	2	0.013652	15567	DP690-3	86.136	63.355			0.81085	0.92363	NaN	1	0	Median	12398000	6918100	5480300	3074	1531;1849	2883	6194	15097;15098	15098	2208	2	9606
EFFNGKEPSR	1	1	Unmodified	1209.5778	0.57783619	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	4	0				2													11.94	11.94	2;3	0.001083	4488	DP690-4	125.97	97.392			1.4308	1.6319	20.277	2	0	Median	43815000	16076000	27739000	3075	462	2884	6195;6196	15099;15100;15101;15102;15103;15104	15100		6	9606
EFFSTIVVDAIDVLK	1	0	Unmodified	1694.9131	0.91308906	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									2	2							27.121	27.121	2	0.0006276	22468	DP690-9	104.87	83.195			0.9327	1.0774	9.7578	3	0	Median	16370000	9213500	7156700	3076	1046	2885	6197;6198;6199;6200	15105;15106;15107;15108;15109;15110;15111;15112;15113	15111		9	9606
EFGNLHNTVALLVLHSDVSSQR	0	1	Unmodified	2435.2557	0.25572077	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		2															19.267	19.267	3;4	0.0010452	12746	DP690-2	71.148	53.796			1.0289	1.0676	3.0998	2	0	Median	9152400	4185600	4966800	3077	2418	2886	6201;6202	15114;15115;15116;15117;15118	15114		5	9606
EFGPVVIDYGK	1	0	Unmodified	1222.6234	0.6233894	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								17.94	17.94	2	0.08083	12299	DP690-9	61.353	44.257			1.2793	1.6394	NaN	1	0	Median	15155000	7248500	7906800	3078	1264	2887	6203	15119	15119		1	9606
EFHLNESGDPSSK	1	0	Unmodified	1445.6423	0.64228694	447	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	6	0						2											12.409	12.409	2;3	0.00021123	4965	DP690-6	150.04	93.611			1.3204	1.5193	NaN	1	0	Median	13550000	5014100	8535900	3079	447	2888	6204;6205	15120;15121;15122;15123;15124	15124		5	9606
EFIAPVTLK	1	0	Unmodified	1016.5906	0.59063271	89	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	3	0			1														17.221	17.221	2	0.025722	11632	DP690-3	75.043	39.425			0.85694	0.91617	NaN	1	0	Median	14131000	8091800	6039600	3080	89	2889	6206	15125;15126	15125		2	9606
EFIDFSDTDEVFR	0	1	Unmodified	1618.7151	0.71511753	2067	Q9C0E2	XPO4	Exportin-4	yes	yes	0	0	0	3	0			1														21.253	21.253	2	0.005912	16676	DP690-3	111.06	74.675			NaN	NaN	NaN	0	0	Median	1475800	0	1475800	3081	2067	2890	6207	15127	15127		1	9606
EFIQEPAK	1	0	Unmodified	960.49165	0.49164694	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	4	0				1													12.746	12.746	2	0.044393	5639	DP690-4	122.13	61.329			2.5084	2.6669	NaN	1	0	Median	63251000	15682000	47569000	3082	111	2891	6208	15128	15128		0	9606
EFKGDEILAATMK	2	0	Oxidation (M)	1467.7279	0.72793082	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	1	1	12	0												1					15.194	15.194	3	0.014094	9421	DP690-12	63.16	37.459			0.88507	1.0087	NaN	1	0	Median	77996000	41885000	36111000	3083	1200	2892	6209	15129;15130	15130	1853	2	9606
EFKGDEILAATMK	2	0	Unmodified	1451.733	0.7330162	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	1	12	0												1					17	17	3	0.00021311	11799	DP690-12	86.803	42.378			0.81186	0.93132	NaN	1	0	Median	58764000	29815000	28949000	3084	1200	2892	6210	15131;15132	15131		2	9606
EFLEKEELPR	1	1	Unmodified	1288.6663	0.66631685	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	1	4	0				1													14.319	14.319	3	0.021086	7758	DP690-4	63.426	43.785			0.69793	0.796	NaN	1	0	Median	31440000	18816000	12624000	3085	1227	2893	6211	15133	15133		1	9606
EFLFNAIETMPYVK	1	0	Oxidation (M)	1716.8433	0.84329493	1535	Q7LG56	RRM2B	Ribonucleoside-diphosphate reductase subunit M2 B	yes	yes	0	1	0	6	0						1											20.677	20.677	2	0.0025603	14761	DP690-6	93.258	93.258			0.7431	0.84145	NaN	1	0	Median	5897600	3385200	2512400	3086	1535	2894	6212	15134;15135;15136;15137	15135	2216	4	9606
EFLHAQEEVKR	1	1	Unmodified	1384.7099	0.709913	743	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	1	9	4					1								1				10.912	10.912	3	0.001942	3356	DP690-13	84.658	62.081			1.0102	1.1576	0.73138	2	0	Median	55285000	26162000	29122000	3087	743	2895	6213;6214	15138;15139;15140;15141	15138		4	9606
EFLIALLEK	1	0	Unmodified	1074.6325	0.63249752	241	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	10	0										1							21.924	21.924	2	0.002596	19402	DP690-10	109.48	58.143			0.67766	0.82322	NaN	1	0	Median	16999000	10640000	6359400	3088	241	2896	6215	15142;15143	15142		2	9606
EFLPEGQDIGAFVAEQK	1	0	Unmodified	1876.9207	0.92069363	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	10	0										1							20.232	20.232	2	3.5947E-09	17019	DP690-10	183.89	153.75			0.91944	1.135	NaN	1	0	Median	83989000	42971000	41018000	3089	1111	2897	6216	15144;15145;15146;15147	15144		4	9606
EFLQTESPESTELQSR	0	1	Unmodified	1879.88	0.87995103	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9.5	0.5									1	1							16.19	16.19	2	0.00018833	10097	DP690-9	144.28	81.649			NaN	NaN	NaN	0	0	Median	22013000	22013000	0	3090	1762	2898	6217;6218	15148;15149	15149		2	9606
EFNEDGALAVLQQFK	1	0	Unmodified	1707.8468	0.84680041	207	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	12	0												1					22.287	22.287	2	2.3579E-05	18653	DP690-12	126.66	87.944			0.87828	1.0629	NaN	1	0	Median	2923300	1632700	1290600	3091	207	2899	6219	15150;15151;15152	15152		3	9606
EFNEEGALSVLQQFK	1	0	Unmodified	1737.8574	0.85736509	176	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	11	0											1						22.002	22.002	2	1.0976E-15	19268	DP690-11	257.09	207.62			0.96456	1.1692	NaN	1	0	Median	70779000	34444000	36335000	3092	176	2900	6220	15153;15154;15155;15156;15157;15158;15159	15154		7	9606
EFPDVLECTVSHAVEK	1	0	Unmodified	1858.8771	0.87711426	777	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	0	7	0							1										18.804	18.804	3	0.00057051	13131	DP690-7	89.506	68.253			0.82553	0.89454	NaN	1	0	Median	26540000	13815000	12725000	3093	777	2901	6221	15160;15161	15161		2	9606
EFPGFLENQK	1	0	Unmodified	1207.5873	0.58733824	930	P60903	S100A10	Protein S100-A10	yes	yes	0	0	0	16	0																1	17.595	17.595	2	0.00048121	11674	DP690-16	119.21	83.773			0.73731	0.84057	NaN	1	0	Median	41043000	24070000	16973000	3094	930	2902	6222	15162;15163;15164;15165	15165		4	9606
EFPGFLENQKDPLAVDK	2	0	Unmodified	1945.9785	0.97854286	930	P60903	S100A10	Protein S100-A10	yes	yes	0	0	1	16	0																2	18.548	18.548	2;3	1.797E-05	12887	DP690-16	119.88	107.38			0.68289	0.77577	5.1365	2	0	Median	76044000	45477000	30568000	3095	930	2903	6223;6224	15166;15167;15168;15169;15170;15171	15170		6	9606
EFQLTEENTK	1	0	Unmodified	1237.5826	0.5826468	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	12	0												1					14.216	14.216	2	1.2589E-05	7865	DP690-12	297.37	210.19			0.92955	1.0135	NaN	1	0	Median	285170000	143640000	141530000	3096	2240	2904	6225	15172;15173;15174;15175	15175		4	9606
EFQQNNWHAVGCGFR	0	1	Unmodified	1848.8114	0.81143473	2275	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	6	0						1											15.21	15.21	3	0.053653	8366	DP690-6	44.457	28.15			0.55932	0.63825	NaN	1	0	Median	5237500	3128400	2109200	3097	2275	2905	6226	15176;15177	15176		2	9606
EFQQYLPVVMGPLMK	1	0	Oxidation (M)	1794.9048	0.90484933	82	O00410	IPO5	Importin-5	yes	yes	0	1	0	3	0			1														21.083	21.083	2	0.0013582	16438	DP690-3	101.3	77.781			0.84682	0.88798	NaN	1	0	Median	4774100	2759700	2014400	3098	82	2906	6227	15178	15178	86;87	1	9606
EFQQYLPVVMGPLMK	1	0	2 Oxidation (M)	1810.8998	0.89976395	82	O00410	IPO5	Importin-5	yes	yes	0	2	0	3	0			1														19.366	19.366	2	1.4769E-07	14373	DP690-3	169.21	116.42			NaN	NaN	NaN	0	0	Median	10024000	10024000	0	3099	82	2906	6228	15179;15180;15181	15180	86;87	3	9606
EFSFVQSSLGFVALVLSTLHTLTYGWTR	0	1	Unmodified	3158.6441	0.64407185	1455	Q658P3	STEAP3	Metalloreductase STEAP3	yes	yes	0	0	0	13	0													1				30.263	30.263	3	4.0223E-06	25589	DP690-13	119.76	105.15			0.76194	0.89632	NaN	1	0	Median	3693900	2026400	1667500	3100	1455	2907	6229	15182;15183;15184	15183		3	9606
EFSHAEQCLTGLQEENYSSALSCIAESLK	1	0	Unmodified	3300.4915	0.49147189	2233	Q9NVH2	INTS7	Integrator complex subunit 7	yes	yes	0	0	0	11	0											1						22.02	22.02	3	5.7681E-06	19293	DP690-11	111.15	102.87			0.76842	0.94717	NaN	1	0	Median	11996000	5698400	6297100	3101	2233	2908	6230	15185	15185		1	9606
EFSITDVVPYPISLR	0	1	Unmodified	1734.9192	0.91923707	654	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	3	0			1														23.101	23.101	2	0.0017748	18781	DP690-3	133.05	83.699			NaN	NaN	NaN	0	0	Median	1990300	0	1990300	3102	654	2909	6231	15186;15187	15187		2	9606
EFSPFGTITSAK	1	0	Unmodified	1283.6398	0.63976774	471	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	12	0												1					18.293	18.293	2	0.054098	13710	DP690-12	58.511	26.669			1.143	1.3633	NaN	1	0	Median	38048000	18970000	19078000	3103	471	2910	6232	15188;15189;15190	15190		3	9606
EFVEAVLELR	0	1	Unmodified	1203.6499	0.6499385	249	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	14	0														1			20.581	20.581	2	0.00034232	16393	DP690-14	123.21	90.316			1.5665	1.919	NaN	1	0	Median	15726000	6501800	9223900	3104	249	2911	6233	15191;15192;15193	15193		3	9606
EFWEQKPLLIQR	1	1	Unmodified	1585.8617	0.86166261	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	1	13	0													2				17.425	17.425	2;3	0.00057647	12091	DP690-13	100.82	76.261			0.90208	1.0286	NaN	1	0	Median	87686000	46477000	41210000	3105	1597	2912	6234;6235	15194;15195;15196;15197;15198	15195		5	9606
EGAAHAFAQYNMDQFTPVK	1	0	Oxidation (M)	2139.9684	0.96838888	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	1	0	10	4						1								1			15.569	15.569	3	1.0982E-06	8773	DP690-6	133.94	121.81			0.80549	0.9465	4.0138	2	0	Median	100150000	58524000	41622000	3106	864	2913	6236;6237	15199;15200;15201;15202;15203;15204	15203	1309	6	9606
EGAAVIDVGINR	0	1	Unmodified	1212.6463	0.64625011	486	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	yes	0	0	0	14	0														1			15.95	15.95	2	0.071523	10191	DP690-14	82.831	37.495			NaN	NaN	NaN	0	0	Median	20340000	20340000	0	3107	486	2914	6238	15205	15205		1	9606
EGAITFTWVER	0	1	Unmodified	1307.651	0.65100113	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	3	0			1														19.271	19.271	2	0.068561	14295	DP690-3	57.532	0.80242			0.9091	1.0253	NaN	1	0	Median	9087300	4206700	4880500	3108	724	2915	6239	15206	15206		1	9606
EGALCEENMR	0	1	Unmodified	1207.4962	0.49615675	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	7	4			1								1						12.468	12.468	2	0.00012978	5168	DP690-3	138.98	90.181			1.0838	1.2419	8.5901	2	0	Median	195340000	94805000	100540000	3109	483	2916	6240;6241	15207;15208;15209;15210;15211;15212;15213;15214	15214		8	9606
EGATVYATGTHAQVEDGR	0	1	Unmodified	1860.8602	0.86021864	645	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	14	0														1			11.926	11.926	3	4.4673E-05	4623	DP690-14	118.5	108.08			0.71866	0.86894	NaN	1	0	Median	54297000	24050000	30247000	3110	645	2917	6242	15215;15216;15217	15215		3	9606
EGCLAFGTDDGK	1	0	Unmodified	1268.5343	0.53431639	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0										1							14.679	14.679	2	0.04382	9106	DP690-10	62.408	36.469			0.94421	1.1638	NaN	1	0	Median	53320000	25831000	27489000	3111	1724	2918	6243	15218	15218		1	9606
EGDIIPPLTGATPPLIGHLK	1	0	Unmodified	2038.1463	0.14627689	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	10	0										1							19.856	19.856	3	2.1668E-05	16461	DP690-10	120.82	120.82			0.53399	0.65836	NaN	1	0	Median	153040000	94209000	58826000	3112	1167	2919	6244	15219;15220;15221;15222	15219		4	9606
EGDLIAAQAR	0	1	Unmodified	1042.5407	0.5407224	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.5	0.5											1	1					13.004	13.004	2	0.00019914	6093	DP690-12	127.46	93.911			0.81513	0.92991	10.128	2	0	Median	375410000	209030000	166380000	3113	359	2920	6245;6246	15223;15224;15225;15226;15227;15228;15229	15228		7	9606
EGDLITLLVPEAR	0	1	Unmodified	1424.7875	0.78749461	2423	Q9UQB8	BAIAP2	Brain-specific angiogenesis inhibitor 1-associated protein 2	yes	yes	0	0	0	12	0												2					22.604	22.604	2	0.0075816	19076	DP690-12	106.4	61.536			NaN	NaN	NaN	0	0	Median	8411100	4403800	4007400	3114	2423	2921	6247;6248	15230;15231;15232;15233	15232		4	9606
EGDVLTLLESER	0	1	Unmodified	1359.6882	0.6881745	997	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	0	0	12	4								1								1	20.723	20.723	2	3.9052E-10	15438	DP690-16	250.92	212.14			0.90478	1.0227	0.33565	2	0	Median	122370000	61547000	60825000	3115	997	2922	6249;6250	15234;15235;15236;15237;15238;15239;15240;15241	15236		8	9606
EGDVLTLLESEREAR	0	2	Unmodified	1715.869	0.86899241	997	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	0	1	16	0																1	18.639	18.639	3	0.0020743	13131	DP690-16	76.326	52.392			0.94963	1.0033	NaN	1	0	Median	3969700	2021700	1948000	3116	997	2923	6251	15242	15242		1	9606
EGEELVMDEEAYVLYHR	0	1	Oxidation (M)	2096.9361	0.9360857	1972	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	1	0	13	0													1				18.893	18.893	3	0.00037892	14070	DP690-13	92.8	92.8			0.54935	0.67548	NaN	1	0	Median	25688000	14531000	11156000	3117	1972	2924	6252	15243	15243	2518	1	9606
EGELTVAQGR	0	1	Unmodified	1058.5356	0.53563702	1104	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	4	0				1													12.518	12.518	2	0.00068813	5182	DP690-4	113.26	8.8188			0.88981	1.0009	NaN	1	0	Median	30571000	16404000	14167000	3118	1104	2925	6253	15244	15244		1	9606
EGFDALDPFIPILVSNYNPK	1	0	Unmodified	2248.1416	0.14158544	832	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	14	0														1			25.322	25.322	2	0.00012454	21874	DP690-14	114.21	114.21			0.59106	0.69625	NaN	1	0	Median	3247600	2210000	1037500	3119	832	2926	6254	15245;15246;15247;15248	15247		4	9606
EGFFELIPQDLIK	1	0	Unmodified	1547.8235	0.82354577	764	P46934	NEDD4	E3 ubiquitin-protein ligase NEDD4	yes	yes	0	0	0	3	0			1														23.654	23.654	2	0.0050136	19307	DP690-3	84.31	51.787			1.0236	1.0683	NaN	1	0	Median	2692500	1459900	1232600	3120	764	2927	6255	15249;15250;15251;15252	15249		4	9606
EGFFTNGLTLGAK	1	0	Unmodified	1353.6929	0.69286595	656	P35080	PFN2	Profilin-2	yes	yes	0	0	0	8	0								1									19.531	19.531	2	0.00018646	13042	DP690-8	159.83	126.57			0.79613	0.87683	NaN	1	0	Median	21939000	11957000	9982000	3121	656	2928	6256	15253;15254;15255;15256	15253		4	9606
EGFSIPVSADGFK	1	0	Unmodified	1352.6612	0.66123147	808;16	P49792;O14715;Q99666;A6NKT7;Q7Z3J3	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	no	no	0	0	0	10	0										1							19.167	19.167	2	0.085645	15602	DP690-10	54.486	24.719			0.84314	1.042	NaN	1	0	Median	75383000	37564000	37819000	3122	808;16	2929	6257	15257;15258	15257		2	9606
EGFVEYTEQVVK	1	0	Unmodified	1426.698	0.6980109	82;208	O00410;O60518	IPO5;RANBP6	Importin-5;Ran-binding protein 6	no	no	0	0	0	3	0			1														18.243	18.243	2	4.3364E-05	12897	DP690-3	128.03	95.817			1.3569	1.4398	NaN	1	0	Median	31773000	14945000	16828000	3123	82;208	2930	6258	15259;15260	15260		2	9606
EGGAGGGFGSPMDIFDMFFGGGGR	0	1	2 Oxidation (M)	2353.9732	0.97321626	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	2	0	13	0													1				24.992	24.992	2	0.030561	21291	DP690-13	94.544	73.96			NaN	NaN	NaN	0	0	Median	0	0	0	3124	636	2931	6259	15261	15261	874;875	1	9606
EGGDGEEQDVGDAGR	0	1	Unmodified	1489.5917	0.59170793	1645	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	12	0												1					10.823	10.823	2	0.0011351	3279	DP690-12	155.88	131.05			NaN	NaN	NaN	0	0	Median	0	0	0	3125	1645	2932	6260	15262	15262		1	9606
EGGFLLLHTLLR	0	1	Unmodified	1367.7925	0.79252041	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		2	2														20.608	20.608	2;3	3.1375E-10	14126	DP690-2	215.72	215.72			0.86762	0.90316	21.658	4	0	Median	94787000	53827000	40960000	3126	789	2933	6261;6262;6263;6264	15263;15264;15265;15266;15267;15268;15269;15270;15271;15272;15273;15274;15275	15266		13	9606
EGGGAIEEEAKEK	2	0	Unmodified	1345.6361	0.63613893	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	1	10	0										2							10.549	10.549	2;3	0.00078163	3078	DP690-10	118.9	98.915			0.83624	1.0009	NaN	1	0	Median	138860000	76666000	62190000	3127	1710	2934	6265;6266	15276;15277;15278	15276		3	9606
EGGLGPLNIPLLADVTR	0	1	Unmodified	1733.9676	0.96758424	643	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	10.3	4.03							1	1								1	23.651	23.651	2	2.4685E-09	18821	DP690-7	187.74	173.46			0.75049	0.84282	7.6407	3	0	Median	35125000	20068000	15057000	3128	643	2935	6267;6268;6269	15279;15280;15281;15282;15283;15284;15285;15286;15287;15288;15289	15285		11	9606
EGGQIAVFDATNTTR	0	1	Unmodified	1578.7638	0.76379906	1373	Q16875	PFKFB3	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	0	4	0				1													16.18	16.18	2	0.0058206	10091	DP690-4	128.36	63.989			NaN	NaN	NaN	0	0	Median	0	0	0	3129	1373	2936	6270	15290	15290		1	9606
EGGQYGLVAACAAGGQGHAMIVEAYPK	1	0	Oxidation (M)	2720.2687	0.26867	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	1	0	13	0													1				16.31	16.31	3	7.3932E-05	10601	DP690-13	93.21	81.291			0.82283	0.95055	NaN	1	0	Median	66667000	33791000	32876000	3130	894	2937	6271	15291	15291	1370	1	9606
EGGSAGLIPSQFLEEK	1	0	Unmodified	1660.8308	0.83081599	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	12	0												1					19.573	19.573	2	0.00089116	15300	DP690-12	96.756	73.242			0.77021	0.91833	NaN	1	0	Median	56130000	31875000	24255000	3131	2280	2938	6272	15292;15293;15294;15295	15292		4	9606
EGIHAQQKEPMIGVNQELAYFYPELFR	1	1	Oxidation (M)	3222.5808	0.58081966	32	CON__P02662			yes	yes	0	1	1	4.5	3.04	1	1					1	1									20.809	20.809	4	0.00081241	14474	DP690-2	86.039	63.583		+	NaN	NaN	NaN	0	0	Median	36051000	36051000	0	3132	32	2939	6273;6274;6275;6276	15296;15297;15298;15299;15300;15301;15302;15303	15298	33	8	
EGIIPANYVQK	1	0	Unmodified	1230.6608	0.66083754	719	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	5	0					1												15.823	15.823	2	0.002257	9056	DP690-5	95.815	72.671			0.76511	0.76365	NaN	1	0	Median	38216000	19807000	18408000	3133	719	2940	6277	15304;15305	15304		2	9606
EGIPALDNFLDKL	1	0	Unmodified	1443.7609	0.76094551	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	11	1.07									1		5		1				24.43	24.43	2	0.00042407	21950	DP690-11	119.27	87.78			0.90333	1.1019	5.6853	3	0	Plateau	61620000	30884000	30736000	3134	483	2941	6278;6279;6280;6281;6282;6283;6284	15306;15307;15308;15309;15310;15311;15312;15313;15314;15315;15316	15307		11	9606
EGIVQTEQIR	0	1	Unmodified	1171.6197	0.619701	1484	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	12	0												1					13.572	13.572	2	0.02658	7053	DP690-12	95.775	40.405			NaN	NaN	NaN	0	0	Median	32506000	0	32506000	3135	1484	2942	6285	15317	15317		1	9606
EGLDEVAGIINDAK	1	0	Unmodified	1442.7253	0.72528829	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							19.995	19.995	2	0.015945	16695	DP690-10	105.2	57.016			NaN	NaN	NaN	0	0	Median	0	0	0	3136	1240	2943	6286	15318	15318		1	9606
EGLELPEDEEEKK	2	0	Unmodified	1543.7253	0.72534787	416;409	P07900;Q58FG0;Q58FF6;P08238;Q58FF7	HSP90AA1;HSP90AA5P;HSP90AB4P;HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	no	no	0	0	1	3	0			1														13.768	13.768	2	0.0050173	7093	DP690-3	91.701	91.701			0.78383	0.85304	NaN	1	0	Median	10631000	5812500	4818500	3137	409;416	2944	6287	15319;15320;15321;15322	15321		4	9606
EGLELPEDEEEKKK	3	0	Unmodified	1671.8203	0.82031088	416;409	P07900;Q58FG0;P08238;Q58FF7	HSP90AA1;HSP90AA5P;HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	no	no	0	0	2	3	0			1														12.375	12.375	3	0.00013919	5033	DP690-3	130.15	63.059			0.88981	0.9231	NaN	1	0	Median	251880000	134090000	117790000	3138	409;416	2945	6288	15323;15324;15325;15326	15325		4	9606
EGLISQDGSSLEALLR	0	1	Unmodified	1686.8788	0.87882882	1789	Q92785	DPF2	Zinc finger protein ubi-d4	yes	yes	0	0	0	13	0													1				21.599	21.599	2	0.00027886	17443	DP690-13	112.84	55.696			0.94574	1.1539	NaN	1	0	Median	39999000	19930000	20069000	3139	1789	2946	6289	15327;15328	15328		2	9606
EGLLDPNVK	1	0	Unmodified	983.52876	0.52876073	177	O43414	ERI3	ERI1 exoribonuclease 3	yes	yes	0	0	0	15	0															1		15.063	15.063	2	0.001342	8766	DP690-15	122.18	55.747			0.75354	0.84811	NaN	1	0	Median	95550000	53204000	42346000	3140	177	2947	6290	15329;15330;15331;15332	15331		4	9606
EGLLGLQNLLK	1	0	Unmodified	1196.7129	0.71287311	1546;236	Q7Z460;O75122	CLASP1;CLASP2	CLIP-associating protein 1;CLIP-associating protein 2	no	no	0	0	0	10	0										1							21.578	21.578	2	6.0072E-06	18823	DP690-10	195.05	104.68			0.83108	1.0223	NaN	1	0	Median	48917000	27207000	21710000	3141	1546;236	2948	6291	15333;15334;15335;15336;15337	15334		5	9606
EGLMLDSHEELYK	1	0	Oxidation (M)	1578.7236	0.72357373	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	5.5	3.5		1							1								15.333	15.333	2;3	0.010313	8939	DP690-9	102.53	68.57			1.12	1.1235	NaN	1	0	Median	7983600	5396400	2587200	3142	1264	2949	6292;6293	15338;15339;15340	15339	1909	3	9606
EGLNLPSQLAHR	0	1	Unmodified	1333.7102	0.71024735	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	14	0														1			15.238	15.238	3	0.00044919	9119	DP690-14	91.313	70.305			0.83212	0.99584	NaN	1	0	Median	101120000	53868000	47250000	3143	712	2950	6294	15341;15342;15343;15344	15342		4	9606
EGLPVALDK	1	0	Unmodified	940.52295	0.52294707	2426	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	15	0															1		15.507	15.507	2	0.02334	9541	DP690-15	76.1	46.024			0.4742	0.53006	NaN	1	0	Median	113050000	64379000	48670000	3144	2426	2951	6295	15345	15345		1	9606
EGLTSIEEVTK	1	0	Unmodified	1204.6187	0.61869795	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	7	3.56		1							1	1							16.112	16.112	2	0.00012377	9937	DP690-9	154.01	122.48			0.83624	0.94229	8.3357	3	0	Median	516650000	263010000	253640000	3145	1319	2952	6296;6297;6298	15346;15347;15348;15349;15350;15351;15352;15353;15354;15355;15356;15357	15357		12	9606
EGMNIVEAMER	0	1	2 Oxidation (M)	1309.5642	0.56423631	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	2	0	8.4	4.03					2			2								1	13.012	13.012	2	0.0029546	7489	DP690-5	117.01	70.885			0.85741	0.9055	5.6808	3	0	Plateau	246610000	65526000	181090000	3146	1008	2953	6299;6300;6301;6302;6303	15358;15359;15360;15361;15362;15363;15364	15361	1529;1530	6	9606
EGMNIVEAMER	0	1	Oxidation (M)	1293.5693	0.56932169	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	1	0	8	0								1									14.394	14.394	2	0.0066275	7365	DP690-8	90.149	53.455			0.92376	1.0293	NaN	1	0	Median	18963000	9553000	9410400	3147	1008	2953	6304	15365;15366;15367	15366	1529;1530	3	9606
EGMNIVEAMER	0	1	Unmodified	1277.5744	0.57440707	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	8	0								1									18.4	18.4	2	0.00024824	11839	DP690-8	121.6	89.283			0.85733	1.0251	NaN	1	0	Median	4060500	2015800	2044700	3148	1008	2953	6305	15368;15369;15370	15369		3	9606
EGMQLISEKPETEAVVK	2	0	Unmodified	1886.9659	0.96592926	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							15.304	15.304	3	0.055334	9995	DP690-10	74.89	38.697			NaN	NaN	NaN	0	0	Median	36642000	36642000	0	3149	1080	2954	6306	15371	15371		1	9606
EGMQLISEKPETEAVVK	2	0	Oxidation (M)	1902.9608	0.96084389	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	1	1	10	0										1							13.792	13.792	3	0.028828	7744	DP690-10	89.484	45.892			NaN	NaN	NaN	0	0	Median	0	0	0	3150	1080	2954	6307	15372	15372	1691	1	9606
EGNASGVSLLEALDTILPPTRPTDK	1	1	Unmodified	2593.3599	0.35991107	1118	Q05639	EEF1A2	Elongation factor 1-alpha 2	yes	yes	0	0	1	13	0													1				23.476	23.476	3	0.00086364	19686	DP690-13	69.913	57.111			0.71273	0.84584	NaN	1	0	Median	6094700	3395700	2699000	3151	1118	2955	6308	15373;15374	15374		2	9606
EGNASGVSLLEALDTILPPTRPTDKPLR	1	2	Unmodified	2959.5978	0.59784994	1118	Q05639	EEF1A2	Elongation factor 1-alpha 2	yes	yes	0	0	2	13	0													2				22.214	22.214	3;4	7.0619E-13	18228	DP690-13	160.52	143.16			0.52075	0.58648	5.522	2	0	Median	120100000	75321000	44781000	3152	1118	2956	6309;6310	15375;15376;15377;15378;15379;15380;15381;15382;15383	15380		9	9606
EGNEQLTEEER	0	1	Unmodified	1332.5794	0.57935233	1672	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	3	0			1														11.103	11.103	2	0.00025139	3564	DP690-3	121.5	72.442			1.2745	1.4067	NaN	1	0	Median	4651600	1863700	2787900	3153	1672	2957	6311	15384;15385	15385		2	9606
EGNVPNIIIAGPPGTGK	1	0	Unmodified	1632.8835	0.88352026	663	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	14	0														1			17.539	17.539	2	0.00036771	12372	DP690-14	107.93	82.585			0.60297	0.72823	NaN	1	0	Median	86515000	56230000	30285000	3154	663	2958	6312	15386;15387;15388;15389	15387		4	9606
EGPFYPTLR	0	1	Unmodified	1078.5447	0.54474515	2386	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	0	0	0	12	4								1								1	16.72	16.72	2	0.0032093	9940	DP690-8	107.01	80.315			0.80848	0.91808	3.4723	2	0	Median	91682000	48546000	43136000	3155	2386	2959	6313;6314	15390;15391;15392;15393;15394;15395	15393		6	9606
EGPHYTPPIPNYQPPEGR	0	1	Unmodified	2047.9752	0.97518882	2186	Q9NQ50	MRPL40	39S ribosomal protein L40, mitochondrial	yes	yes	0	0	0	15	0															1		15.421	15.421	3	0.0017121	9293	DP690-15	89.877	50.014			NaN	NaN	NaN	0	0	Median	6617500	6617500	0	3156	2186	2960	6315	15396	15396		1	9606
EGPSGSGDSQLSASSR	0	1	Unmodified	1520.6703	0.6702926	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	9.5	0.5									1	1							10.853	10.853	2	4.2044E-22	3599	DP690-10	244.73	201.44			0.64175	0.80114	26.857	2	0	Median	86067000	46776000	39291000	3157	1158	2961	6316;6317	15397;15398;15399;15400;15401;15402;15403;15404	15400		8	9606
EGPVQFEEDPFGLDKFLEEAK	2	0	Unmodified	2423.1533	0.15327234	1226	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	1	12	0												1					23.154	23.154	3	0.00010207	19619	DP690-12	108.45	96.658			0.66645	0.77564	NaN	1	0	Median	8770400	5492700	3277700	3158	1226	2962	6318	15405;15406;15407;15408	15405		4	9606
EGPYDVVVLPGGNLGAQNLSESAAVK	1	0	Unmodified	2583.318	0.31804626	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	7.33	0.471							2	1									20.243	20.243	2;3	1.5422E-45	14786	DP690-7	232.62	205.16			0.70534	0.77695	3.2998	2	0	Median	108760000	60129000	48635000	3159	1939	2963	6319;6320;6321	15409;15410;15411;15412;15413;15414;15415;15416;15417;15418;15419;15420;15421;15422;15423;15424	15411		16	9606
EGPYSISVLYGDEEVPR	0	1	Unmodified	1908.9105	0.91052288	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.57	3.33		1							1	2	1	1	1				19.572	19.572	2	2.6289E-24	16180	DP690-10	271.32	209.36			0.70646	0.8239	10.055	4	0	Median	1690799999.9999998	983530000	707240000	3160	549	2964	6322;6323;6324;6325;6326;6327;6328	15425;15426;15427;15428;15429;15430;15431;15432;15433;15434;15435;15436;15437;15438;15439;15440;15441;15442;15443;15444	15429		20	9606
EGQEEVLKEVVESEGER	1	1	Unmodified	1944.9276	0.9276295	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	1	10	0										1							17.355	17.355	3	9.4435E-05	12935	DP690-10	113.47	92.38			0.81647	0.99371	NaN	1	0	Median	126790000	74612000	52174000	3161	1710	2965	6329	15445;15446	15446		2	9606
EGQEEVLKEVVESEGERK	2	1	Unmodified	2073.0226	0.022592521	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	2	10	0										1							16.012	16.012	3	0.0011793	11061	DP690-10	80.459	62.956			0.74737	0.85284	NaN	1	0	Median	125610000	73428000	52180000	3162	1710	2966	6330	15447;15448;15449	15448		3	9606
EGQEIASVSDDHTCR	0	1	Unmodified	1702.7217	0.72167625	1699	Q8NFH4	NUP37	Nucleoporin Nup37	yes	yes	0	0	0	14	0														3			11.205	11.205	2;3	5.8269E-06	3708	DP690-14	190.1	158.87			0.83316	1.0102	NaN	1	0	Median	35050000	17905000	17145000	3163	1699	2967	6331;6332;6333	15450;15451;15452;15453	15452		4	9606
EGQRPTQPVYQIQNR	0	2	Unmodified	1812.9231	0.92309367	2093	Q9H0W8	SMG9	Protein SMG9	yes	yes	0	0	1	8	4				1								1					12.173	12.173	3	0.00043508	5047	DP690-12	96.371	59.74			0.82285	0.89687	2.3634	2	0	Median	34827000	18140000	16687000	3164	2093	2968	6334;6335	15454;15455;15456;15457;15458	15454		5	9606
EGQWDCSACLVQNEGSSTK	1	0	Unmodified	2154.8946	0.89463159	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9	0									1								15.87	15.87	2	0.00011052	9662	DP690-9	157.86	143.26			NaN	NaN	NaN	0	0	Median	0	0	0	3165	808	2969	6336	15459	15459		1	9606
EGQWDCSSCLVR	0	1	Unmodified	1495.6184	0.61839715	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	10	0										1							15.653	15.653	2	0.052544	10475	DP690-10	87.298	57.044			NaN	NaN	NaN	0	0	Median	0	0	0	3166	808	2970	6337	15460	15460		1	9606
EGQWDCSVCLVR	0	1	Unmodified	1507.6548	0.65478266	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	no	0	0	0	9.67	0.471									1	2							17.257	17.257	2	4.6373E-05	12812	DP690-10	128.27	107.49			0.82763	1.0323	1.0088	2	0	Median	100820000	56691000	44126000	3167	808	2971	6338;6339;6340	15461;15462;15463;15464	15461		4	9606
EGRPSGEAFVELESEDEVK	1	1	Unmodified	2105.9753	0.97530798	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	1	13	0													2				16.432	16.432	2;3	2.5059E-31	10662	DP690-13	262.73	202.86			0.76541	0.79933	22.081	2	0	Median	1455900000	841480000	614400000	3168	639	2972	6341;6342	15465;15466;15467;15468;15469;15470;15471;15472;15473	15469		9	9606
EGRPSGEAFVELESEEEVK	1	1	Unmodified	2119.991	0.99095804	901	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	1	13	0													2				16.602	16.602	2;3	2.8116E-06	10890	DP690-13	127.01	93.698			0.68012	0.71601	NaN	1	0	Median	303650000	182410000	121240000	3169	901	2973	6343;6344	15474;15475;15476	15474		3	9606
EGSDGPLATSKPVPAEK	2	0	Unmodified	1681.8523	0.85227972	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	1	12	0												1					11.518	11.518	3	0.0020081	4268	DP690-12	74.428	37.501			0.65826	0.76135	NaN	1	0	Median	41154000	19070000	22084000	3170	417	2974	6345	15477;15478	15478		2	9606
EGSGGSTSDYVSQSYSYSSILNK	1	0	Unmodified	2415.0714	0.071393207	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	3	0			1														18.263	18.263	2	0.0063139	13036	DP690-3	93.909	67.283			NaN	NaN	NaN	0	0	Median	3177000	0	3177000	3171	1887	2975	6346	15479	15479		1	9606
EGSIILDAIR	0	1	Unmodified	1085.6081	0.60807369	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	0	0	3	0			1														18.652	18.652	2	0.029672	13395	DP690-3	93.598	59.345			NaN	NaN	NaN	0	0	Median	18862000	0	18862000	3172	2061	2976	6347	15480;15481	15480		2	9606
EGSVLDILK	1	0	Unmodified	972.54916	0.54916182	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	10	0										1							19.574	19.574	2	0.052803	16137	DP690-10	87.639	25.093			NaN	NaN	NaN	0	0	Median	28968000	28968000	0	3173	807	2977	6348	15482;15483	15482		2	9606
EGVFPDNFAVQINELDKDFPKPK	3	0	Unmodified	2646.333	0.33296804	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	2	11	0											1						21.138	21.138	4	0.0022222	18174	DP690-11	73.796	61.242			0.52835	0.57229	NaN	1	0	Median	77771000	47796000	29975000	3174	2501	2978	6349	15484	15484		1	9606
EGVILTNESAASTGQPDNDVTEGQR	0	1	Unmodified	2587.1998	0.19978162	1141	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	3	0			1														15.455	15.455	2	8.7715E-07	9266	DP690-3	145.46	115.55			NaN	NaN	NaN	0	0	Median	0	0	0	3175	1141	2979	6350	15485	15485		1	9606
EGVLKEEILLACEGGTGTCVR	1	1	Unmodified	2290.1297	0.1297169	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	1	6	3.2		1	2	2	12	1	1	1					1	2			21.109	21.109	2;3	6.9656E-85	11642	DP690-7	295.71	224.15			NaN	NaN	NaN	0	0	Median	28293000000	0	28293000000	3176	2071	2980	6351;6352;6353;6354;6355;6356;6357;6358;6359;6360;6361;6362;6363;6364;6365;6366;6367;6368;6369;6370;6371;6372;6373	15486;15487;15488;15489;15490;15491;15492;15493;15494;15495;15496;15497;15498;15499;15500;15501;15502;15503;15504;15505;15506;15507;15508;15509;15510;15511;15512;15513;15514;15515;15516;15517;15518;15519;15520;15521;15522;15523;15524;15525;15526;15527;15528;15529;15530;15531;15532	15530		47	9606
EGVLTGSPEQKEEAAK	2	0	Unmodified	1671.8315	0.83154427	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	9.67	0.471									1	2							11.161	11.161	2;3	2.6458999999999997E-46	3947	DP690-10	248.19	172.54			0.78731	0.96522	15.846	2	0	Median	119790000	71630000	48155000	3177	1782	2981	6374;6375;6376	15533;15534;15535;15536;15537;15538;15539	15536		7	9606
EGYAWAEDKEHCEEYGR	1	1	Unmodified	2127.8592	0.85923236	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	1	12	0												2					13.388	13.388	3;4	4.391E-23	6715	DP690-12	255.28	246.38			1.0108	1.1901	13.782	2	0	Median	198660000	102430000	96229000	3178	2475	2982	6377;6378	15540;15541;15542;15543;15544	15541		4	9606
EGYNNPPISGENLIGLSR	0	1	Unmodified	1928.9592	0.9592044	2503	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	0	12	0												1					18.788	18.788	2	0.0073167	14296	DP690-12	121.95	76.064			NaN	NaN	NaN	0	0	Median	12372000	12372000	0	3179	2503	2983	6379	15545	15545		1	9606
EHALLAYTLGVK	1	0	Unmodified	1313.7343	0.73433683	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	11.6	3.29		1	1	1	2	1			2	1	1	1	27	2	1	1	20.979	20.979	2;3	3.122E-10	10910	DP690-13	215.56	215.56			0.97509	1.0436	12.024	27	0	Median	19520000000	9858200000	9661600000	3180	1031;1118	2984	6380;6381;6382;6383;6384;6385;6386;6387;6388;6389;6390;6391;6392;6393;6394;6395;6396;6397;6398;6399;6400;6401;6402;6403;6404;6405;6406;6407;6408;6409;6410;6411;6412;6413;6414;6415;6416;6417;6418;6419;6420;6421	15546;15547;15548;15549;15550;15551;15552;15553;15554;15555;15556;15557;15558;15559;15560;15561;15562;15563;15564;15565;15566;15567;15568;15569;15570;15571;15572;15573;15574;15575;15576;15577;15578;15579;15580;15581;15582;15583;15584;15585;15586;15587;15588;15589;15590;15591;15592;15593;15594;15595;15596;15597;15598;15599;15600;15601;15602;15603;15604;15605;15606;15607;15608;15609;15610;15611;15612;15613;15614;15615;15616;15617;15618;15619;15620;15621;15622;15623;15624;15625;15626;15627;15628;15629;15630;15631;15632;15633;15634;15635;15636;15637;15638;15639;15640;15641;15642;15643;15644;15645;15646;15647;15648;15649;15650;15651;15652;15653;15654;15655;15656;15657	15560		111	9606
EHALLAYTLGVKQLIVGVNK	2	0	Unmodified	2165.2572	0.25722432	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	1	13	0													1				19.575	19.575	3	0.00032667	14894	DP690-13	91.518	87.924			1.0148	1.1512	NaN	1	0	Median	28685000	14873000	13812000	3181	1031;1118	2985	6422	15658	15658		1	9606
EHDPVGQMVNNPK	1	0	Oxidation (M)	1479.6776	0.67762659	892	P55060	CSE1L	Exportin-2	yes	yes	0	1	0	3	0			2														10.334	10.334	2;3	0.0001214	2523	DP690-3	114.72	94.338			0.8944	0.92541	NaN	1	0	Median	84042000	48959000	35083000	3182	892	2986	6423;6424	15659;15660;15661;15662	15659	1359	4	9606
EHEQFQHAIEK	1	0	Unmodified	1394.6579	0.65787742	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	2	0		1															10.414	10.414	3	0.040545	2425	DP690-2	95.618	76.519			1.1218	1.1348	NaN	1	0	Median	23246000	7923300	15322000	3183	283	2987	6425	15663	15663		0	9606
EHFAQFGHVR	0	1	Unmodified	1226.5945	0.59448931	2075	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	yes	yes	0	0	0	16	0																1	11.233	11.233	3	5.4391E-05	3753	DP690-16	134.05	98.756			0.81577	0.93004	NaN	1	0	Median	38205000	20710000	17494000	3184	2075	2988	6426	15664;15665;15666;15667	15664		4	9606
EHGLIFMETSAK	1	0	Oxidation (M)	1377.6599	0.65985126	1736;935	Q8WUD1;P61019	RAB2B;RAB2A	Ras-related protein Rab-2B;Ras-related protein Rab-2A	no	no	0	1	0	15	0															1		13.521	13.521	2	0.00091778	6771	DP690-15	128.91	86.51			NaN	NaN	NaN	0	0	Median	0	0	0	3185	1736;935	2989	6427	15668	15668	1454	1	9606
EHGVGGVSQCPEPGLR	0	1	Unmodified	1677.7893	0.7893023	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										2							12.252	12.252	2;3	2.671E-06	5488	DP690-10	127.32	95.071			0.6872	0.81724	NaN	1	0	Median	225700000	133370000	92334000	3186	2065	2990	6428;6429	15669;15670;15671	15669		3	9606
EHGVVPQADNATPSER	0	1	Unmodified	1705.802	0.80197548	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	10.5	0.866									1		3						11.103	11.103	2;3	8.4077E-09	3682	DP690-11	178.47	155.02			0.72808	0.8936	7.4557	2	0	Median	132750000	85289000	47459000	3187	1941	2991	6430;6431;6432;6433	15672;15673;15674;15675;15676;15677;15678;15679;15680;15681	15676		10	9606
EHINLGCDMDFDIAGPSIR	0	1	Oxidation (M)	2174.9725	0.97248798	552	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	1	0	14	0														1			17.914	17.914	3	0.033183	12893	DP690-14	60.134	60.134			0.76195	0.92392	NaN	1	0	Median	33725000	18986000	14738000	3188	552	2992	6434	15682	15682	715	0	9606
EHLLQGLLPDVQVPTSVK	1	0	Unmodified	1972.0993	0.099326699	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							19.973	19.973	3	0.00023722	16717	DP690-10	95.554	73.888			0.62832	0.76812	NaN	1	0	Median	26884000	18631000	8252900	3189	13	2993	6435	15683;15684	15683		2	9606
EHLQNLENSAFTADR	0	1	Unmodified	1743.8176	0.81762554	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	0	12	0												3					14.814	14.814	2;3	1.6072E-07	8763	DP690-12	160.63	138.15			NaN	NaN	NaN	0	0	Median	67968000	0	67968000	3190	2521	2994	6436;6437;6438	15685;15686;15687;15688	15686		4	9606
EHNGHITGIDWAPK	1	0	Unmodified	1573.7637	0.76373948	1786	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	yes	yes	0	0	0	14	0														1			13.547	13.547	3	0.010008	6829	DP690-14	64.842	46.43			1.0874	1.3225	NaN	1	0	Median	46265000	22196000	24069000	3191	1786	2995	6439	15689;15690	15690		2	9606
EHPWEVMPDLYFYR	0	1	Unmodified	1880.8556	0.85559095	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	0	14	0														1			20.802	20.802	3	0.018866	16694	DP690-14	57.034	42.78			0.81923	1.0019	NaN	1	0	Median	16551000	10545000	6006100	3192	428	2996	6440	15691	15691		1	9606
EHPWEVMPDLYFYRDPEEIEKEEQAAAEK	2	1	Oxidation (M)	3593.6297	0.62967993	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	1	2	14	0														2			18.87	18.87	4;5	4.3329E-06	14164	DP690-14	115.84	92.85			0.68682	0.82666	NaN	1	0	Median	443550000	307620000	135930000	3193	428	2997	6441;6442	15692;15693;15694;15695	15694	493	4	9606
EHQAHVENLEADIKR	1	1	Unmodified	1787.8915	0.89145919	1211	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	1	2	0		1															11.649	11.649	4	0.010824	3841	DP690-2	57.328	41.337			0.77748	0.76535	NaN	1	0	Median	4241300	2364600	1876700	3194	1211	2998	6443	15696;15697	15696		2	9606
EHSLQVSPSLEK	1	0	Unmodified	1352.6936	0.69359423	310	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	11	0											1						12.561	12.561	2	1.3966E-07	5778	DP690-11	197.73	135.97			0.69142	0.84281	NaN	1	0	Median	31735000	19318000	12417000	3195	310	2999	6444	15698;15699;15700;15701	15698		4	9606
EHSVHDSVELHLR	0	1	Unmodified	1556.7696	0.76955314	2294	Q9P0U3	SENP1	Sentrin-specific protease 1	yes	yes	0	0	0	12	0												1					11.552	11.552	4	0.00042863	4258	DP690-12	84.169	64.475			0.9772	1.1936	NaN	1	0	Median	6156700	3629500	2527300	3196	2294	3000	6445	15702;15703	15702		2	9606
EHSYVLSAAK	1	0	Unmodified	1103.5611	0.56112349	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	0	11	0											1						10.996	10.996	2	3.1145E-05	3511	DP690-11	175.51	110.95			0.88635	0.96314	NaN	1	0	Median	346880000	183250000	163620000	3197	144	3001	6446	15704;15705;15706;15707;15708	15704		5	9606
EHVIEALR	0	1	Unmodified	965.52943	0.52942943	601	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	15	0															1		11.703	11.703	2	0.04135	4327	DP690-15	124.83	95.458			0.90092	0.95882	NaN	1	0	Median	265300000	134730000	130570000	3198	601	3002	6447	15709	15709		0	9606
EHVIEALRR	0	2	Unmodified	1121.6305	0.63054046	601	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	1	15	0															1		10.585	10.585	3	0.0052053	3035	DP690-15	88.37	12.306			3.4455	3.7376	NaN	1	0	Median	17204000	4785900	12418000	3199	601	3003	6448	15710;15711	15710		2	9606
EHYSSLCSLSDQLAGK	1	0	Unmodified	1793.8254	0.82541304	1455	Q658P3	STEAP3	Metalloreductase STEAP3	yes	yes	0	0	0	13	0													2				16.462	16.462	3	2.4461E-18	10685	DP690-13	159.18	103.98			NaN	NaN	NaN	0	0	Median	76776000	39242000	37535000	3200	1455	3004	6449;6450	15712;15713;15714;15715	15712		4	9606
EIAAVFQDNR	0	1	Unmodified	1161.5778	0.57783619	1558	Q7Z7H8	MRPL10	39S ribosomal protein L10, mitochondrial	yes	yes	0	0	0	15	0															1		15.429	15.429	2	9.5364E-05	9369	DP690-15	146.23	99.841			0.77017	0.8747	NaN	1	0	Median	49012000	24394000	24618000	3201	1558	3005	6451	15716;15717;15718	15718		3	9606
EIAEAYLGK	1	0	Unmodified	992.51786	0.51786169	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	8	4				1								1					14.73	14.73	2	0.0033709	8100	DP690-4	106.36	26.905			1.3482	1.4584	53.644	2	0	Median	354200000	148520000	205680000	3202	463	3006	6452;6453	15719;15720;15721;15722	15722		4	9606
EIAEEYGGVMVSFPR	0	1	Unmodified	1682.7974	0.79740737	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							19.614	19.614	2	0.012087	16159	DP690-10	116.01	72.927			NaN	NaN	NaN	0	0	Median	0	0	0	3203	1071	3007	6454	15723	15723		1	9606
EIAENALGK	1	0	Unmodified	943.49746	0.4974606	638	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	14	0														1			12.113	12.113	2	0.0052887	4908	DP690-14	98.629	37.657			1.0556	1.2679	NaN	1	0	Median	24190000	12638000	11553000	3204	638	3008	6455	15724;15725	15725		2	9606
EIAQDFKTDLR	1	1	Unmodified	1334.683	0.68302954	1036	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	1	12	4								2								2	14.431	14.431	2;3	0.00028702	7730	DP690-16	113.63	63.435			0.92586	0.97256	6.7228	4	0	Median	2595800000	1304600000	1291200000	3205	1036	3009	6456;6457;6458;6459	15726;15727;15728;15729;15730;15731;15732;15733;15734;15735;15736	15726		11	9606
EIAQEFKTDLR	1	1	Unmodified	1348.6987	0.69867961	1444	Q5TEC6	HIST2H3PS2	Histone H3	yes	yes	0	0	1	16	0																2	14.527	14.527	2;3	1.2035E-05	7983	DP690-16	163.38	108.27			0.9543	0.96778	0.51753	2	0	Median	982110000	519890000	462220000	3206	1444	3010	6460;6461	15737;15738;15739;15740;15741;15742;15743	15742		7	9606
EICAVLAAVTEVIR	0	1	Unmodified	1542.844	0.84396364	1420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	10	0										1							23.743	23.743	2	0.00017127	21653	DP690-10	118.9	118.9			0.96602	1.2121	NaN	1	0	Median	9152100	4819500	4332600	3207	1420	3011	6462	15744;15745;15746;15747	15744		4	9606
EICLQSQSK	1	0	Unmodified	1091.5281	0.5281088	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.8	0.433										1	3						11.537	11.537	2	2.0361E-06	4272	DP690-11	169.06	117.73			0.87996	1.0176	NaN	1	0	Median	441230000	279990000	161250000	3208	2190	3012	6463;6464;6465;6466	15748;15749;15750;15751;15752;15753;15754;15755;15756	15754		9	9606
EICNAYTELNDPMR	0	1	Oxidation (M)	1740.7447	0.74471988	1316	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	1	0	4	0				2													15.669	15.669	2	0.0044445	9343	DP690-4	113.38	89.39			NaN	NaN	NaN	0	0	Median	5031600	2558900	2472700	3209	1316	3013	6467;6468	15757;15758;15759;15760;15761	15757	2006	5	9606
EICTIQSSGGIMLLK	1	0	Oxidation (M)	1664.8477	0.84772838	1123	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	1	0	4	0				1													17.935	17.935	2	0.00053006	12255	DP690-4	111.52	76.752			1.1646	1.2535	NaN	1	0	Median	6084900	2970500	3114300	3210	1123	3014	6469	15762	15762	1746	1	9606
EIDFDDVAAINPELLQLLPLHPK	1	0	Unmodified	2599.3898	0.38975464	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	9	0									1								24.614	24.614	3	0.046107	20122	DP690-9	55.763	36.176			NaN	NaN	NaN	0	0	Median	858000	858000	0	3211	1950	3015	6470	15763	15763		1	9606
EIDLVNRDPK	1	1	Unmodified	1197.6354	0.63535107	1103	Q03135;P56539	CAV1;CAV3	Caveolin-1;Caveolin-3	yes	no	0	0	1	12.5	3.5									1							1	12.406	12.406	2	0.00010756	5105	DP690-16	176.33	176.33			0.73632	0.82346	7.0761	2	0	Median	93529000	51231000	42298000	3212	1103	3016	6471;6472	15764;15765;15766;15767;15768;15769;15770;15771	15765		8	9606
EIEDFDSLEALR	0	1	Unmodified	1435.6831	0.68308912	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					19.755	19.755	2	0.00015234	15593	DP690-12	152.97	76.909			NaN	NaN	NaN	0	0	Median	27681000	0	27681000	3213	750	3017	6473	15772;15773	15772		2	9606
EIEEGQPEAPWTLPGGR	0	1	Unmodified	1864.8955	0.89554151	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							18.395	18.395	2	0.068525	14413	DP690-10	85.973	38.988			NaN	NaN	NaN	0	0	Median	0	0	0	3214	1254	3018	6474	15774	15774		1	9606
EIEELKELLPEIR	1	1	Unmodified	1609.8927	0.89268797	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	1	4	0				1													20.194	20.194	2	0.00029181	14959	DP690-4	134.3	114.1			0.99713	1.1372	NaN	1	0	Median	2265100	1161800	1103200	3215	788	3019	6475	15775	15775		1	9606
EIEELKQELIQAEIQNGVK	2	0	Unmodified	2210.1794	0.17942751	1168	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	1	14	0														1			19.026	19.026	3	0.039148	14329	DP690-14	46.133	30.473			0.97503	1.0937	NaN	1	0	Median	37883000	18967000	18916000	3216	1168	3020	6476	15776	15776		1	9606
EIEELQSQAQALSQEGK	1	0	Unmodified	1886.9222	0.92215019	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										2							16.778	16.778	2	1.4019E-27	12143	DP690-10	282.62	251.76			0.94741	1.1715	NaN	1	0	Median	71549000	35873000	35676000	3217	1080	3021	6477;6478	15777;15778	15777		2	9606
EIEIDYTGTEPSSPCNK	1	0	Unmodified	1938.8517	0.85168737	2230	Q9NV96	TMEM30A	Cell cycle control protein 50A	yes	yes	0	0	0	12.5	0.5												1	1				15.946	15.946	2	0.00032983	10083	DP690-13	198.55	169.24			NaN	NaN	NaN	0	0	Median	11946000	11946000	0	3218	2230	3022	6479;6480	15779;15780	15780		2	9606
EIEMASEERPPAQALEIMMGLK	1	1	3 Oxidation (M)	2520.191	0.19099653	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	3	1	10	0										1							16.16	16.16	3	0.0036452	11329	DP690-10	62.916	42.565			0.84907	1.0418	NaN	1	0	Median	112400000	60532000	51871000	3219	604	3023	6481	15781;15782;15783;15784	15783	834;835;836	4	9606
EIEMASEERPPAQALEIMMGLK	1	1	2 Oxidation (M)	2504.1961	0.19608191	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	2	1	10	0										2							18.114	18.114	3	0.00023757	15287	DP690-10	94.188	50.862			0.66767	0.82508	7.0258	2	0	Median	204160000	120530000	83635000	3220	604	3023	6482;6483	15785;15786;15787;15788	15786	834;835;836	4	9606
EIEMSVDDDDINSSK	1	0	Oxidation (M)	1711.7094	0.70943981	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	1	0	10	0.816									1	1	1						13.392	13.392	2	2.8885E-14	7176	DP690-10	220.5	195.99			0.89479	1.089	5.2343	3	0	Plateau	214330000	117140000	97181000	3221	2190	3024	6484;6485;6486	15789;15790;15791;15792;15793;15794;15795;15796;15797;15798;15799;15800;15801;15802	15792	2669	14	9606
EIEMSVDDDDINSSK	1	0	Unmodified	1695.7145	0.71452518	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.2	0.829									1	1	2						15.751	15.751	2	9.3632E-60	10580	DP690-10	275.48	237.88			NaN	NaN	NaN	0	0	Median	38284000	38284000	0	3222	2190	3024	6487;6488;6489;6490	15803;15804;15805;15806;15807	15803		5	9606
EIEPNYESPSSNNQDKDSSQASK	2	0	Unmodified	2553.1103	0.11029791	2131	Q9H792	PEAK1	Pseudopodium-enriched atypical kinase 1	yes	yes	0	0	1	10	0										2							11.482	11.482	3	0.0020393	4515	DP690-10	99.846	85.751			NaN	NaN	NaN	0	0	Median	10019000	10019000	0	3223	2131	3025	6491;6492	15808;15809;15810	15809		3	9606
EIESSPQYR	0	1	Unmodified	1107.5197	0.51965261	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	3	0			1														11.164	11.164	2	0.00084437	3597	DP690-3	129.47	52.183			0.7059	0.79359	NaN	1	0	Median	8252000	4661900	3590100	3224	1755	3026	6493	15811	15811		1	9606
EIETYHNLLEGGQEDFESSGAGK	1	0	Unmodified	2509.1245	0.12449141	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	6.42	3.71	1	1	1	2	1		1	1	2			1	1				17.602	17.602	2;3	1.9037E-103	11912	DP690-9	368.4	309.1		+	NaN	NaN	NaN	0	0	Median	332390000	332390000	0	3225	667	3027	6494;6495;6496;6497;6498;6499;6500;6501;6502;6503;6504;6505	15812;15813;15814;15815;15816;15817;15818;15819;15820;15821;15822;15823;15824;15825;15826;15827;15828;15829;15830;15831;15832;15833;15834;15835;15836;15837	15836		26	9606
EIEVDSSPSVLEILDTAGTEQFASMR	0	1	Oxidation (M)	2839.3433	0.34333431	945;2476	Q9Y3L5;P10114;P61225	RAP2C;RAP2A;RAP2B	Ras-related protein Rap-2c;Ras-related protein Rap-2a;Ras-related protein Rap-2b	no	no	0	1	0	16	0																1	23.679	23.679	2	0.0005844	18598	DP690-16	103.13	77.766			NaN	NaN	NaN	0	0	Median	554640	554640	0	3226	2476;945	3028	6506	15838	15838	1462	1	9606
EIFDFSPEEHLK	1	0	Unmodified	1489.7089	0.70890994	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								17.74	17.74	3	0.025411	12086	DP690-9	56.205	36.6			0.65471	0.82634	NaN	1	0	Median	6611900	3510400	3101400	3227	1762	3029	6507	15839;15840	15840		2	9606
EIFDIAFPDEQAEALAVER	0	1	Unmodified	2162.0532	0.053164368	682	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	11	0											1						22.506	22.506	2	0.0033132	19945	DP690-11	128.22	103.71			0.7821	0.96859	NaN	1	0	Median	9011100	5486500	3524600	3228	682	3030	6508	15841	15841		0	9606
EIFEQPESVVNTMR	0	1	Oxidation (M)	1693.7981	0.79813565	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	1	0	3.5	0.5			1	1													16.389	16.389	2	0.00031328	10277	DP690-4	117.95	63.605			0.93314	1.0829	NaN	1	0	Median	16230000	8302200	7928000	3229	1122	3031	6509;6510	15842;15843;15844;15845;15846	15843	1744	5	9606
EIFISNITQANPGIVTCLENHPHK	1	0	Unmodified	2731.3752	0.37518398	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														18.612	18.612	4	0.00057708	13396	DP690-3	72.316	72.316			0.7959	0.847	NaN	1	0	Median	28360000	17189000	11171000	3230	5	3032	6511	15847;15848	15847		2	9606
EIFLSQPILLELEAPLK	1	0	Unmodified	1952.1234	0.12341618	963;683;964	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	9.8	3.6						2			1					2			24.625	24.625	2	1.4162E-12	21093	DP690-14	202.29	202.29			0.87076	1.023	143.81	3	0	Median	33894000	15077000	18817000	3231	963;964;683	3033	6512;6513;6514;6515;6516	15849;15850;15851;15852;15853;15854;15855;15856;15857;15858;15859;15860;15861	15851		13	9606
EIFMLSALSQEDVK	1	0	Unmodified	1608.8069	0.80690943	268	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	14	0														1			21.091	21.091	2	0.00036345	17074	DP690-14	141.71	99.373			NaN	NaN	NaN	0	0	Median	22020000	22020000	0	3232	268	3034	6517	15862	15862		1	9606
EIGALLQQLR	0	1	Unmodified	1139.6663	0.66625727	1913	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	5	0					1												19.148	19.148	2	0.00057989	13269	DP690-5	116.37	65.668			1.0944	1.1495	NaN	1	0	Median	23528000	12474000	11055000	3233	1913	3035	6518	15863;15864;15865;15866	15863		4	9606
EIGLLADEIEIYGK	1	0	Unmodified	1561.8239	0.8239397	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	7	4			1								1						21.328	21.328	2	3.3948E-06	18367	DP690-11	184.36	184.36			0.88125	0.99321	4.0314	2	0	Median	89747000	50064000	39683000	3234	1504	3036	6519;6520	15867;15868;15869;15870;15871	15867		5	9606
EIGLLSEEVELYGETK	1	0	Unmodified	1807.9091	0.90912589	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	8.33	3.77			1								2						20.983	20.983	2	1.0142E-17	17795	DP690-11	225.55	209.96			0.81829	0.88362	3.2027	2	0	Median	289850000	168490000	121360000	3235	470	3037	6521;6522;6523	15872;15873;15874;15875	15872		4	9606
EIGQSVDEVEK	1	0	Unmodified	1231.5932	0.59321148	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							12.95	12.95	2	0.00045855	6547	DP690-10	114.86	65.322			0.76102	0.93312	NaN	1	0	Median	164640000	92776000	71866000	3236	1080	3038	6524	15876;15877	15876		2	9606
EIGSSTSSSSETVVK	1	0	Unmodified	1496.7206	0.72059684	1904	Q96NE9	FRMD6	FERM domain-containing protein 6	yes	yes	0	0	0	8	4				1								1					11.762	11.762	2	1.4597E-05	4575	DP690-12	153.81	116.11			1.1136	1.3386	NaN	1	0	Median	23032000	9249600	13782000	3237	1904	3039	6525;6526	15878;15879;15880;15881;15882;15883	15881		6	9606
EIHEYLSQR	0	1	Unmodified	1173.5778	0.57783619	1695	Q8NFA0	USP32	Ubiquitin carboxyl-terminal hydrolase 32	yes	yes	0	0	0	2	0		1															11.931	11.931	2	0.024648	4134	DP690-2	75.378	41.126			1.0711	1.0952	NaN	1	0	Median	1262000	629900	632150	3238	1695	3040	6527	15884	15884		1	9606
EIIDLVLDR	0	1	Unmodified	1084.6128	0.61282471	1032;1521;1977	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	9.56	4.46		1	1	1	1	1	1	1	1			1	4	1	1	1	21.019	21.019	2	7.5614E-05	16253	DP690-14	167.23	167.23			1.1012	1.2154	15.345	15	0	Median	4821500000	2383600000	2437900000	3239	1032;1521;1977	3041	6528;6529;6530;6531;6532;6533;6534;6535;6536;6537;6538;6539;6540;6541;6542;6543	15885;15886;15887;15888;15889;15890;15891;15892;15893;15894;15895;15896;15897;15898;15899;15900;15901;15902;15903;15904;15905;15906;15907;15908;15909;15910;15911;15912;15913;15914;15915;15916;15917;15918;15919;15920;15921;15922;15923;15924;15925;15926;15927;15928;15929;15930;15931;15932;15933;15934;15935;15936;15937;15938;15939;15940;15941;15942	15901		58	9606
EIIDLVLDRIR	0	2	Unmodified	1353.798	0.79799972	1032;1521;1977	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	9	4					1								1				20.814	20.814	3	0.04315	15415	DP690-5	72.848	40.814			1.4585	1.6747	NaN	1	0	Median	6769700	3065000	3704600	3240	1032;1521;1977	3042	6544;6545	15943;15944	15944		1	9606
EIIDPVLDR	0	1	Unmodified	1068.5815	0.58152458	1033	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	13	0													1				16.923	16.923	2	0.047588	11368	DP690-13	68.224	38.148			1.3889	1.665	NaN	1	0	Median	91962000	42799000	49163000	3241	1033	3043	6546	15945;15946	15946		2	9606
EIIINAVR	0	1	Unmodified	926.55492	0.5549159	635	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	0	6	0						1											15.038	15.038	2	0.056176	8135	DP690-6	111.65	65.696			0.81536	0.92338	NaN	1	0	Median	18277000	9556500	8720600	3242	635	3044	6547	15947	15947		0	9606
EIILDDDECPLQIFR	0	1	Unmodified	1874.9084	0.90841439	895	P55196	MLLT4	Afadin	yes	yes	0	0	0	10	0										1							22.136	22.136	2	9.2953E-10	19640	DP690-10	236.77	176.17			0.70374	0.87862	NaN	1	0	Median	28430000	14929000	13501000	3243	895	3045	6548	15948;15949;15950;15951;15952	15950		5	9606
EIIPTSEFINSK	1	0	Unmodified	1376.7187	0.71874635	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	2	0		1															17.797	17.797	2	0.004033	11117	DP690-2	88.134	67.263			0.81618	0.81583	NaN	1	0	Median	4145500	2173000	1972500	3244	1282	3046	6549	15953;15954	15953		2	9606
EIISHISQHGGK	1	0	Unmodified	1304.6837	0.68369824	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							10.387	10.387	3	0.00014189	2766	DP690-10	114.71	83.642			0.82262	0.9265	NaN	1	0	Median	507290000	280330000	226960000	3245	13	3047	6550	15955;15956	15955		2	9606
EIISNLAK	1	0	Unmodified	886.51238	0.51238239	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	10	0										1							13.874	13.874	2	0.056865	7822	DP690-10	111.04	21.666			0.60886	0.74121	NaN	1	0	Median	181040000	92188000	88848000	3246	263	3048	6551	15957	15957		0	9606
EIKDILIQYDR	1	1	Unmodified	1404.7613	0.76127986	969	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	1	13.3	3.77								1								2	17.214	17.214	2;3	3.0285E-05	11265	DP690-16	114.24	83.171			0.89381	0.88968	12.906	3	0	Plateau	697490000	368700000	328790000	3247	969	3049	6552;6553;6554	15958;15959;15960;15961;15962;15963;15964;15965	15958		8	9606
EILAELTGR	0	1	Unmodified	1000.5553	0.55530983	419	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	13.5	0.5													1	1			17.644	17.644	2	0.0049443	12386	DP690-13	100.02	47.614			0.74041	0.9036	3.7638	2	0	Median	67820000	39090000	28730000	3248	419	3050	6555;6556	15966;15967;15968	15966		3	9606
EILGTAQSVGCNVDGR	0	1	Unmodified	1674.7995	0.79953264	621	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	13.5	3.2								1							2	1	15.172	15.172	2	9.798E-18	8696	DP690-16	225.72	189.4			1.0083	1.0881	12.493	3	0	Plateau	191150000	90723000	100430000	3249	621	3051	6557;6558;6559;6560	15969;15970;15971;15972;15973;15974;15975;15976;15977;15978;15979	15973		11	9606
EILQDKDGLNQR	1	1	Unmodified	1427.7369	0.73685603	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	1	11	0											1						12.275	12.275	3	0.001185	5390	DP690-11	90.913	28.385			0.84592	0.95305	NaN	1	0	Median	169840000	100990000	68848000	3250	2127	3052	6561	15980	15980		1	9606
EILSEVER	0	1	Unmodified	973.50803	0.50802529	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	4	0				1													14.313	14.313	2	0.054137	7642	DP690-4	139.68	19.191			1.5623	1.6939	NaN	1	0	Median	64366000	24476000	39890000	3251	791	3053	6562	15981	15981		0	9606
EILTLLQGVHQGAGFQDIPK	1	0	Unmodified	2163.1688	0.16880325	1340	Q15631	TSN	Translin	yes	yes	0	0	0	11	4							1								1		19.719	19.719	3	0.00014989	14236	DP690-7	100.77	100.77			0.74362	0.83928	17.647	2	0	Median	48383000	27822000	20562000	3252	1340	3054	6563;6564	15982;15983;15984;15985;15986;15987;15988;15989;15990	15988		9	9606
EILVEESNVQR	0	1	Unmodified	1314.6779	0.67794416	923	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	yes	yes	0	0	0	6	0						1											14.111	14.111	2	7.5192E-07	7085	DP690-6	170.5	68.779			NaN	NaN	NaN	0	0	Median	6225300	6225300	0	3253	923	3055	6565	15991;15992	15992		2	9606
EILVGDVGQTVDDPYATFVK	1	0	Unmodified	2165.0892	0.089215523	572	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	10.3	4.03							1	1								1	20.803	20.803	2	8.1447E-32	15554	DP690-16	255.08	255.08			0.79318	0.88593	6.7161	3	0	Plateau	93416000	51662000	41754000	3254	572	3056	6566;6567;6568	15993;15994;15995;15996;15997;15998;15999;16000;16001;16002;16003;16004;16005;16006	15994		14	9606
EINDCIGGTVLNISK	1	0	Unmodified	1631.8189	0.8188711	285	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	12	0												1					18.189	18.189	2	0.021991	13544	DP690-12	66.023	38.109			1.0326	1.2322	NaN	1	0	Median	70920000	33496000	37424000	3255	285	3057	6569	16007	16007		1	9606
EINITSALAEK	1	0	Unmodified	1187.6398	0.63976774	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							17.168	17.168	2	0.046702	12555	DP690-10	63.216	15.257			1.8571	2.2983	NaN	1	0	Median	63855000	24018000	39837000	3256	13	3058	6570	16008	16008		1	9606
EINSDQATQGNISSDR	0	1	Unmodified	1733.7816	0.78163397	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	11.4	1.76									1	1	3			2			12.063	12.063	2	1.9283E-32	5200	DP690-10	301.35	226.96			0.8264	1.021	NaN	1	0	Median	121480000	64123000	57360000	3257	1377	3059	6571;6572;6573;6574;6575;6576;6577	16009;16010;16011;16012;16013;16014;16015;16016;16017;16018;16019	16010		11	9606
EIPETTPIEEVK	1	0	Unmodified	1383.7133	0.71332662	1520	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	11	0											1						15.567	15.567	2	0.0050911	10234	DP690-11	115.7	60.718			NaN	NaN	NaN	0	0	Median	14258000	14258000	0	3258	1520	3060	6578	16020;16021	16020		2	9606
EIQDSQVPLEK	1	0	Unmodified	1284.6561	0.65614609	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										1							13.684	13.684	2	0.00016618	7524	DP690-10	154.84	106.24			0.88805	1.0971	NaN	1	0	Median	148880000	76162000	72717000	3259	781	3061	6579	16022;16023	16022		2	9606
EIQEAIAVANASTMH	0	0	Oxidation (M)	1599.7563	0.75627084	1382	Q2TAL8	QRICH1	Glutamine-rich protein 1	yes	yes	0	1	0	3	0			1														16.046	16.046	2	0.00069362	10058	DP690-3	138.42	83.883			NaN	NaN	NaN	0	0	Median	0	0	0	3260	1382	3062	6580	16024;16025	16025	2128	2	9606
EIQELQSKPDR	1	1	Unmodified	1341.6888	0.6888432	895	P55196	MLLT4	Afadin	yes	yes	0	0	1	10	0										1							10.681	10.681	2	0.00092256	3252	DP690-10	153.1	46.222			NaN	NaN	NaN	0	0	Median	20208000	0	20208000	3261	895	3063	6581	16026	16026		1	9606
EIQEPDPTYEEK	1	0	Unmodified	1476.662	0.66201933	198	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	11	0											1						13.547	13.547	2	0.0073017	7253	DP690-11	91.469	65.531			0.92471	1.1161	NaN	1	0	Median	51798000	27425000	24372000	3262	198	3064	6582	16027;16028;16029	16027		3	9606
EIQEPLESVEVNQETFR	0	1	Unmodified	2045.9906	0.99056411	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										1							18.567	18.567	2	5.7022E-49	14658	DP690-10	346.46	319.13			0.85909	1.0406	NaN	1	0	Median	177720000	94851000	82864000	3263	781	3065	6583	16030;16031;16032;16033;16034	16033		5	9606
EIQLLQMANEK	1	0	Oxidation (M)	1331.6755	0.67550132	2391	Q9ULP9	TBC1D24	TBC1 domain family member 24	yes	yes	0	1	0	12	0												1					15.729	15.729	2	0.04096	10078	DP690-12	70.977	27.342			0.71006	0.85332	NaN	1	0	Median	25701000	17174000	8526900	3264	2391	3066	6584	16035	16035	2821	1	9606
EIQTTTGNQQVLVR	0	1	Unmodified	1585.8424	0.84238373	1715	Q8TC12	RDH11	Retinol dehydrogenase 11	yes	yes	0	0	0	9.67	3.77							2								1		13.696	13.696	2	2.6936E-09	7041	DP690-15	205.18	158.77			0.60646	0.70375	NaN	1	0	Median	24971000	12122000	12849000	3265	1715	3067	6585;6586;6587	16036;16037;16038;16039;16040	16036		5	9606
EISEGDEVEVYSR	0	1	Unmodified	1510.6787	0.67873203	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	9.6	3.01				1					1		1	2					15.008	15.008	2	1.0586E-10	8930	DP690-12	263.11	182.35			0.83827	0.91187	13.34	3	0	Median	628940000	331020000	297910000	3266	829	3068	6588;6589;6590;6591;6592	16041;16042;16043;16044;16045;16046;16047;16048;16049;16050;16051;16052;16053;16054;16055;16056	16046		16	9606
EISNSDGTRPVGMLGK	1	1	Oxidation (M)	1675.8199	0.81993373	2242	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	1	1	13	0													1				11.472	11.472	3	0.023226	4002	DP690-13	54.402	13.887			0.71153	0.82776	NaN	1	0	Median	64232000	37272000	26959000	3267	2242	3069	6593	16057	16057	2712	1	9606
EISNSDGTRPVGMLGK	1	1	Unmodified	1659.825	0.82501911	2242	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	0	1	13	0													1				13.206	13.206	3	0.064173	6287	DP690-13	67.102	32.333			0.73604	0.85698	NaN	1	0	Median	63402000	35595000	27806000	3268	2242	3069	6594	16058	16058		1	9606
EISYENTQISR	0	1	Unmodified	1338.6416	0.64155866	2267	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	2	0		1															13.86	13.86	2	0.003541	6374	DP690-2	127.76	83.34			NaN	NaN	NaN	0	0	Median	5289900	0	5289900	3269	2267	3070	6595	16059	16059		1	9606
EITAIESSVPCQLLESVLQELK	1	0	Unmodified	2485.2986	0.29855637	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10.2	0.898									2	1	3						27.473	27.473	2	2.3103E-19	25651	DP690-10	188.63	188.63			0.79778	0.96697	24.817	5	0	Median	28593000	16012000	12581000	3270	272	3071	6596;6597;6598;6599;6600;6601	16060;16061;16062;16063;16064;16065;16066;16067;16068;16069;16070;16071;16072;16073;16074	16065		15	9606
EITALAPSTMK	1	0	Oxidation (M)	1176.606	0.60602477	926;1023;1029	P60709;P63261;P68032;P68133;P63267;P62736	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	1	0	9.93	4.98	1	1	1			1		1	1		1	1	1	2	2	1	13.571	13.571	2	0.00089286	6161	DP690-9	112.3	46.83			0.81388	0.86792	15.386	14	0	Median	33406000000	18207000000	15199000000	3271	926;1023;1029	3072	6602;6603;6604;6605;6606;6607;6608;6609;6610;6611;6612;6613;6614;6615	16075;16076;16077;16078;16079;16080;16081;16082;16083;16084;16085;16086;16087;16088;16089;16090;16091;16092;16093;16094;16095;16096;16097;16098;16099;16100;16101;16102;16103;16104;16105;16106;16107;16108;16109;16110	16110	1425	36	9606
EITALAPSTMK	1	0	Unmodified	1160.6111	0.61111015	926;1023;1029	P60709;P63261;P68032;P68133;P63267;P62736	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	12	3.16						1		1	1		1		1	3	1	1	15.494	15.494	2	0.00012459	8037	DP690-6	125.57	70.199			0.80553	0.8817	20.715	8	0	Median	29467000000	16376000000	13091000000	3272	926;1023;1029	3072	6616;6617;6618;6619;6620;6621;6622;6623;6624;6625	16111;16112;16113;16114;16115;16116;16117;16118;16119;16120;16121;16122;16123;16124;16125;16126;16127;16128;16129;16130;16131;16132;16133;16134;16135;16136	16131		26	9606
EITALAPSTMKIK	2	0	Unmodified	1401.7901	0.79013715	926;1023;1029	P60709;P63261;P68032;P68133;P63267;P62736	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	1	14	0														1			15.045	15.045	2	0.026307	8979	DP690-14	112.85	70.655			NaN	NaN	NaN	0	0	Median	10851000	10851000	0	3273	926;1023;1029	3073	6626	16137;16138	16138		2	9606
EITKPLRPLGK	2	1	Unmodified	1250.7711	0.77105669	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	2	10	0										1							10.818	10.818	3	0.0025136	3421	DP690-10	91.549	74.383			0.74148	0.84612	NaN	1	0	Median	192190000	105680000	86505000	3274	1111	3074	6627	16139;16140	16139		2	9606
EITLENKDNIR	1	1	Unmodified	1343.7045	0.70449327	2213	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	yes	yes	0	0	1	6	0						1											12.475	12.475	3	0.062243	5094	DP690-6	48.188	17.619			0.69908	0.78347	NaN	1	0	Median	5692200	3360800	2331400	3275	2213	3075	6628	16141	16141		1	9606
EITLLMQTLNTLSTPEEK	1	0	Oxidation (M)	2076.066	0.06603724	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	1	0	9	3.56				1							1	1					22.026	22.026	2	6.1969E-09	18379	DP690-12	173.59	143.03			0.86203	1.0422	NaN	1	0	Median	48469000	27099000	21371000	3276	701	3076	6629;6630;6631	16142;16143;16144;16145	16143	1027	4	9606
EITLLMQTLNTLSTPEEK	1	0	Unmodified	2060.0711	0.071122618	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	11	0											1						23.282	23.282	2	6.582E-160	20874	DP690-11	358.67	297.98			NaN	NaN	NaN	0	0	Median	5061100	0	5061100	3277	701	3076	6632	16146;16147	16146		2	9606
EIVDLVLDR	0	1	Unmodified	1070.5972	0.59717465	452	P0DPH7;P0DPH8;Q6PEY2	TUBA3E	Tubulin alpha-3E chain	yes	no	0	0	0	9	4					1								1				19.316	19.316	2	0.00011861	13411	DP690-5	124.08	96.943			0.98887	1.0808	5.5423	2	0	Median	320240000	157870000	162370000	3278	452	3077	6633;6634	16148;16149;16150;16151;16152;16153;16154;16155	16155		8	9606
EIVHIQAGQCGNQIGTK	1	0	Unmodified	1851.9261	0.92613014	2010	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	7.67	3.77					2								1				13.174	13.174	2;3	2.1498000000000002E-25	5812	DP690-5	249.89	195.89			1.1252	1.1914	5.9939	2	0	Median	253770000	126370000	127410000	3279	2010	3078	6635;6636;6637	16156;16157;16158;16159;16160;16161;16162;16163;16164;16165	16162		10	9606
EIVHLQAGQCGNQIGAK	1	0	Unmodified	1821.9156	0.91556545	1034;370	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	11.1	4.77				1	2							1	2			3	13.192	13.192	2;3	5.969599999999999E-72	6187	DP690-13	432.55	0			1.0637	1.0575	18.707	7	0	Median	10602000000	5290600000	5311500000	3280	1034;370	3079	6638;6639;6640;6641;6642;6643;6644;6645;6646	16166;16167;16168;16169;16170;16171;16172;16173;16174;16175;16176;16177;16178;16179;16180;16181;16182;16183;16184;16185;16186;16187;16188;16189;16190;16191;16192;16193;16194;16195;16196;16197	16172		32	9606
EIVLADVIDNDSWR	0	1	Unmodified	1643.8155	0.81550028	560	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	5	0					1												21.614	21.614	2	6.1102E-05	16382	DP690-5	171.67	129.48			1.2077	1.2686	NaN	1	0	Median	23517000	11649000	11868000	3281	560	3080	6647	16198;16199	16199		2	9606
EIYEELGRPGEEDLD	0	1	Unmodified	1762.7897	0.78973904	1262	Q14202	ZMYM3	Zinc finger MYM-type protein 3	yes	yes	0	0	1	10	0										1							17.562	17.562	2	0.058035	13246	DP690-10	101.71	75.669			NaN	NaN	NaN	0	0	Median	19605000	19605000	0	3282	1262	3081	6648	16200	16200		1	9606
EIYTHFTCATDTK	1	0	Unmodified	1585.7083	0.70825802	377;426	P08754;P63096;P04899	GNAI3;GNAI1;GNAI2	Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(i) subunit alpha-2	no	no	0	0	0	14	0														1			13.578	13.578	3	0.0028585	6866	DP690-14	79.886	68.782			0.87148	1.0014	NaN	1	0	Median	266100000	132040000	134060000	3283	426;377	3082	6649	16201;16202;16203	16202		3	9606
EKAEGDVAALNR	1	1	Unmodified	1271.647	0.64697839	1028	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	1	15	0															2		10.771	10.771	2;3	3.5887E-07	3232	DP690-15	202.96	110.9			0.83685	0.9579	2.0694	2	0	Median	80610000	42634000	37976000	3284	1028	3083	6650;6651	16204;16205;16206;16207;16208	16204		5	9606
EKDFSPEALKK	3	0	Unmodified	1290.682	0.68196691	155	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	2	14	0														1			10.759	10.759	3	0.012283	3176	DP690-14	71.221	71.221			0.89852	0.92157	NaN	1	0	Median	30793000	16413000	14380000	3285	155	3084	6652	16209;16210	16209		2	9606
EKDIQEESTFSSR	1	1	Unmodified	1554.7162	0.71618016	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	10.5	0.5										1	1						11.896	11.896	2	3.8369E-05	5012	DP690-10	188.27	161.83			1.0964	1.3475	NaN	1	0	Median	28649000	11836000	16813000	3286	732	3085	6653;6654	16211;16212;16213;16214;16215	16212		5	9606
EKDRDPEAQFEMPYVVR	1	2	Oxidation (M)	2123.9946	0.99460363	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	1	2	4	0				1													14.572	14.572	4	0.0049326	8086	DP690-4	67.415	67.415			2.7041	2.7209	NaN	1	0	Median	54837000	13534000	41303000	3287	111	3086	6655	16216	16216	122	1	9606
EKDSVMSANGKPDPDTVPDS	2	0	Oxidation (M)	2103.9266	0.92664322	1558	Q7Z7H8	MRPL10	39S ribosomal protein L10, mitochondrial	yes	yes	0	1	2	15	0															1		11.394	11.394	3	0.033579	4027	DP690-15	46.877	32.405			0.64325	0.73595	NaN	1	0	Median	9299900	5587100	3712800	3288	1558	3087	6656	16217;16218;16219	16218	2236	3	9606
EKEELEEIR	1	1	Unmodified	1173.5877	0.58773217	803	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	1	11	0											1						11.912	11.912	2	0.046499	4805	DP690-11	113.71	71.368			NaN	NaN	NaN	0	0	Median	31616000	0	31616000	3289	803	3088	6657	16220	16220		1	9606
EKEELVLELQTAK	2	0	Unmodified	1528.8348	0.83483874	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	1	10	0										1							15.893	15.893	2	0.0012599	10868	DP690-10	147.58	99.486			NaN	NaN	NaN	0	0	Median	27692000	0	27692000	3290	311	3089	6658	16221;16222	16221		2	9606
EKENLCNLEK	2	0	Unmodified	1275.6129	0.61290107	1561	Q86SQ0	PHLDB2	Pleckstrin homology-like domain family B member 2	yes	yes	0	0	1	10	0										1							11.236	11.236	2	0.00049075	3986	DP690-10	139.38	32.502			0.96496	1.24	NaN	1	0	Median	54824000	27383000	27442000	3291	1561	3090	6659	16223;16224;16225	16225		3	9606
EKENLSYDLVPLK	2	0	Unmodified	1546.8243	0.82427405	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	1	3	0			1														16.612	16.612	2	1.7079E-06	10820	DP690-3	169.82	100.15			NaN	NaN	NaN	0	0	Median	6717300	6717300	0	3292	1778	3091	6660	16226;16227	16226		2	9606
EKEPIVGSTDYGKDEDSAEALLK	3	0	Unmodified	2493.2122	0.21224378	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	2	10	0										1							16.535	16.535	3	0.00028162	11864	DP690-10	106.35	92.029			0.62694	0.67238	NaN	1	0	Median	73560000	47475000	26085000	3293	1236	3092	6661	16228;16229;16230;16231	16230		4	9606
EKESELGDRPLQVGER	1	2	Unmodified	1840.9279	0.92790427	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	2	9.5	0.5									1	1							12.349	12.349	3	0.00014478	5632	DP690-10	112.62	76.965			0.61163	0.68445	7.6339	2	0	Median	247130000	141760000	105370000	3294	13	3093	6662;6663	16232;16233;16234;16235;16236	16234		5	9606
EKFEEMIQQIK	2	0	Unmodified	1421.7225	0.72245152	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	12	0												1					16.93	16.93	2	0.0060713	11688	DP690-12	110.53	98.82			0.89772	1.0459	NaN	1	0	Median	29961000	16036000	13925000	3295	779	3094	6664	16237;16238;16239	16237		3	9606
EKFEEMIQQIK	2	0	Oxidation (M)	1437.7174	0.71736614	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	1	8	4				1								1					13.993	13.993	2	0.0008867	7288	DP690-4	169.93	134.28			1.5643	1.6227	NaN	1	0	Median	38354000	24447000	13907000	3296	779	3094	6665;6666	16240;16241;16242	16242	1156	3	9606
EKGDYILIVK	2	0	Unmodified	1176.6754	0.67542497	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	6	4		1								1							14.949	14.949	2	0.01943	7628	DP690-2	90.601	62.383			1.0797	1.1208	NaN	1	0	Median	121810000	8477300	113330000	3297	1270	3095	6667;6668	16243;16244;16245	16245		3	9606
EKGSSASLVLK	2	0	Unmodified	1117.6343	0.63428844	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	10	0										1							11.062	11.062	2	0.063264	3815	DP690-10	73.9	37.14			0.70632	0.85905	NaN	1	0	Median	112660000	66705000	45951000	3298	1070	3096	6669	16246;16247	16246		2	9606
EKGVDCDIDVPK	2	0	Unmodified	1373.6497	0.6496805	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	1	4	0				1													12.689	12.689	2	0.0016172	5467	DP690-4	160.91	125.76			0.61197	0.62917	NaN	1	0	Median	6689000	4225200	2463800	3299	1120	3097	6670	16248	16248		1	9606
EKITAQSIEELCAVNLYGPDAQVDR	1	1	Unmodified	2818.3807	0.38072287	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								19.492	19.492	3	6.4012E-23	14181	DP690-9	185.25	172.43			0.76812	0.89087	NaN	1	0	Median	29841000	16456000	13385000	3300	1046	3098	6671	16249;16250;16251;16252;16253	16249		5	9606
EKLCYVALDFEQEMATAASSSSLEK	2	0	Oxidation (M)	2822.299	0.29902666	926;1023	P60709;Q6S8J3;P63261	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	1	14	0														1			18.762	18.762	3	1.1776E-31	13925	DP690-14	207.21	194.14			0.83007	0.92394	NaN	1	0	Median	434860000	229080000	205780000	3301	926;1023	3099	6672	16254;16255;16256;16257	16254	1426	4	9606
EKLCYVALDFEQEMATAASSSSLEK	2	0	Unmodified	2806.3041	0.30411203	926;1023	P60709;Q6S8J3;P63261	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	11.5	2.5									1					1			19.068	19.068	3;5	4.9733E-07	18072	DP690-14	138.59	119.64			0.86634	0.96901	NaN	1	0	Median	291880000	245120000	46762000	3302	926;1023	3099	6673;6674	16258;16259;16260	16258		3	9606
EKLEATINELV	1	0	Unmodified	1257.6816	0.68163256	459	P10599	TXN	Thioredoxin	yes	yes	0	0	1	12	4								1								1	19.157	19.157	2	4.6594E-06	13651	DP690-16	230.7	202.96			0.89508	0.99693	8.517	2	0	Median	72976000	38437000	34539000	3303	459	3100	6675;6676	16261;16262;16263;16264;16265;16266;16267;16268	16263		8	9606
EKLEAYQHLFYLLQTNPTYLAK	2	0	Unmodified	2682.4057	0.40573906	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	10	0										1							20.874	20.874	4	0.0048044	17994	DP690-10	57.248	46.245			0.68777	0.86041	NaN	1	0	Median	37894000	22427000	15468000	3304	766	3101	6677	16269	16269		1	9606
EKLEEEENLTR	1	1	Unmodified	1388.6783	0.6783381	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	1	11	0											1						12.159	12.159	2	9.3984E-06	5212	DP690-11	213.8	175.04			0.71744	0.86348	NaN	1	0	Median	66055000	37475000	28580000	3305	1573	3102	6678	16270;16271;16272;16273	16273		4	9606
EKLEMEMEAAR	1	1	Oxidation (M)	1351.6112	0.61118651	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	1	1	12	0												2					11.084	11.084	2;3	0.0012245	3577	DP690-12	151.83	98.075			0.79308	0.94929	4.1262	2	0	Median	153820000	88298000	65523000	3306	1322	3103	6679;6680	16274;16275;16276;16277;16278	16276	2041	5	9606
EKLEMEMEAAR	1	1	Unmodified	1335.6163	0.61627189	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	12	0												2					13.603	13.603	2;3	0.00037838	7049	DP690-12	131.52	108.09			0.84054	1.0119	6.5426	2	0	Median	143050000	80453000	62600000	3307	1322	3103	6681;6682	16279;16280;16281;16282;16283;16284	16282		6	9606
EKLQEEMLQR	1	1	Oxidation (M)	1318.6551	0.65510023	424	P08670	VIM	Vimentin	yes	yes	0	1	1	11.3	3.3				1								1	4				11.264	11.264	2	1.0568E-13	2956	DP690-13	232.83	125.54			0.7706	0.88109	23.978	3	0	Median	235120000	90892000	144230000	3308	424	3104	6683;6684;6685;6686;6687;6688	16285;16286;16287;16288;16289;16290;16291;16292;16293;16294;16295	16293	481	11	9606
EKLQEEMLQR	1	1	Unmodified	1302.6602	0.66018561	424	P08670	VIM	Vimentin	yes	yes	0	0	1	12.5	0.5												1	1				13.043	13.043	2	0.00035949	5984	DP690-13	149.72	50.279			0.54895	0.60066	NaN	1	0	Median	211130000	117310000	93817000	3309	424	3104	6689;6690	16296;16297;16298	16298		3	9606
EKLQEEMLQREEAENTLQSFR	1	2	Oxidation (M)	2623.2548	0.25479408	424	P08670	VIM	Vimentin	yes	yes	0	1	2	12.6	0.49												2	3				15.989	15.989	3;4	3.9863E-07	10115	DP690-13	140.27	115.37			0.86176	0.9613	6.7767	4	0	Median	636580000	337620000	298970000	3310	424	3105	6691;6692;6693;6694;6695	16299;16300;16301;16302;16303;16304;16305;16306;16307;16308;16309;16310	16308	481	12	9606
EKLQEEMLQREEAENTLQSFR	1	2	Unmodified	2607.2599	0.25987945	424	P08670	VIM	Vimentin	yes	yes	0	0	2	13	0													2				16.97	16.97	3;4	5.2944E-05	11495	DP690-13	118.66	101.4			0.78659	0.87587	2.161	2	0	Median	257090000	140240000	116850000	3311	424	3105	6696;6697	16311;16312;16313;16314;16315;16316	16315		6	9606
EKPTDMQNFGLR	1	1	Oxidation (M)	1450.6875	0.68746299	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	1	1	10	0										1							12.646	12.646	3	0.005275	6070	DP690-10	73.632	52.386			0.86749	1.0682	NaN	1	0	Median	106640000	48569000	58068000	3312	1710	3106	6698	16317	16317	2299	1	9606
EKPTDMQNFGLR	1	1	Unmodified	1434.6925	0.69254837	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	1	10	0										1							14.574	14.574	3	0.054551	8926	DP690-10	49.448	34.657			0.7509	0.93929	NaN	1	0	Median	84515000	51648000	32867000	3313	1710	3106	6699	16318	16318		1	9606
EKPTTALLDK	2	0	Unmodified	1114.6234	0.6233894	1170	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	1	11	0											1						11.611	11.611	2	0.051554	4390	DP690-11	78.939	1.0163			0.76475	0.87816	NaN	1	0	Median	102170000	54531000	47637000	3314	1170	3107	6700	16319	16319		1	9606
EKPYFPIPEEYTFIQNVPLEDR	1	1	Unmodified	2723.3483	0.34828376	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	9.5	4.33			1						1		1				1		21.283	21.283	3	2.4102E-10	18472	DP690-11	155.71	140.33			0.64799	0.52302	27.065	4	0	Linear	378310000	242790000	135520000	3315	1078	3108	6701;6702;6703;6704	16320;16321;16322;16323;16324;16325;16326;16327;16328;16329;16330	16323		11	9606
EKQPPIDNIIR	1	1	Unmodified	1321.7354	0.73539946	850	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	1	12	0												1					13.911	13.911	3	0.050863	7516	DP690-12	51.252	28.531			0.72725	0.87404	NaN	1	0	Median	72913000	42505000	30407000	3316	850	3109	6705	16331	16331		1	9606
EKQYLINSQCCSLCQPGQK	2	0	Unmodified	2340.0661	0.06607079	588	P25942	CD40	Tumor necrosis factor receptor superfamily member 5	yes	yes	0	0	1	13	0													1				13.876	13.876	3	0.0012853	7249	DP690-13	75.017	75.017			0.74368	0.84589	NaN	1	0	Median	23728000	14375000	9353100	3317	588	3110	6706	16332	16332		1	9606
EKTHINIVVIGHVDSGK	2	0	Unmodified	1845.0108	0.010846043	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	1	13	0													2				24.005	24.005	4	7.2341E-08	6156	DP690-13	154.81	139.93			1.0991	1.2149	7.7193	2	0	Median	366060000	172410000	193660000	3318	1031;1118	3111	6707;6708	16333;16334;16335;16336;16337	16334		5	9606
EKVDSQYPPVQR	1	1	Unmodified	1444.731	0.73104237	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	1	10	0										1							10.891	10.891	2	0.0076782	3579	DP690-10	135.86	59.795			NaN	NaN	NaN	0	0	Median	8847100	8847100	0	3319	807	3112	6709	16338;16339	16338		2	9606
EKVGEVTYVELLMDAEGK	2	0	Oxidation (M)	2024.9976	0.99762332	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	1	11	0											1						19.758	19.758	3	0.051243	16266	DP690-11	41.905	41.905			0.78627	0.91866	NaN	1	0	Median	61450000	33601000	27850000	3320	849	3113	6710	16340	16340	1277	1	9606
EKVGEVTYVELLMDAEGK	2	0	Unmodified	2009.0027	0.0027087015	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	11	0											1						20.695	20.695	3	0.0010364	17563	DP690-11	78.225	62.88			0.77309	0.91553	NaN	1	0	Median	41368000	25455000	15913000	3321	849	3113	6711	16341;16342;16343	16341		3	9606
EKYGINTDPPK	2	0	Unmodified	1260.635	0.63501672	2462	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	1	16	0																1	11.657	11.657	2	0.011255	4319	DP690-16	92.239	68.471			0.6713	0.77412	NaN	1	0	Median	5930700	3289800	2640900	3322	2462	3114	6712	16344;16345	16344		2	9606
EKYIDQEELNK	2	0	Unmodified	1407.6882	0.6881745	416;409;1411	P07900;Q14568;P08238;Q58FF8	HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	1	3.5	0.5			1	1													12.299	12.299	2	9.8284E-06	5005	DP690-3	275.28	184.68			0.91918	0.9891	NaN	1	0	Median	33891000	17500000	16391000	3323	409;416;1411	3115	6713;6714	16346;16347;16348;16349;16350	16348		5	9606
ELAEDGYSGVEVR	0	1	Unmodified	1422.6627	0.66268803	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	11.8	3.83							1		1						1	1	15.044	15.044	2	2.6697E-05	8287	DP690-7	164.66	113.22			0.91629	1.024	7.6315	4	0	Median	731660000	380090000	351570000	3324	569	3116	6715;6716;6717;6718	16351;16352;16353;16354;16355;16356;16357;16358;16359;16360;16361;16362;16363	16358		13	9606
ELAEQELEK	1	0	Unmodified	1087.5397	0.53971935	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.25	0.433									3	1							13.086	13.086	2	5.5615E-10	5875	DP690-9	176.44	25.409			0.88592	1.0715	NaN	1	0	Median	240080000	146180000	93898000	3325	1319	3117	6719;6720;6721;6722	16364;16365;16366;16367;16368	16365		5	9606
ELAEQELEKQR	1	1	Unmodified	1371.6994	0.69940789	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								12.389	12.389	2	0.0053423	5060	DP690-9	145.25	76.591			NaN	NaN	NaN	0	0	Median	0	0	0	3326	1319	3118	6723	16369	16369		1	9606
ELAGHTGYLSCCR	0	1	Unmodified	1522.6657	0.66568169	999	P62873	GNB1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	yes	yes	0	0	0	14	0														1			12.384	12.384	2	0.068018	5239	DP690-14	84.687	51.37			NaN	NaN	NaN	0	0	Median	0	0	0	3327	999	3119	6724	16370	16370		1	9606
ELALNTAQFAK	1	0	Unmodified	1204.6452	0.64518747	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	4	0				1													16.468	16.468	2	0.00011612	10496	DP690-4	134.26	97.813			0.93884	1.0122	NaN	1	0	Median	33408000	16967000	16441000	3328	1227	3120	6725	16371;16372	16371		2	9606
ELANSPDCPQMCAYK	1	0	Oxidation (M)	1798.7324	0.73244063	784	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	1	0	6	0						1											12.585	12.585	2	2.4226E-05	5145	DP690-6	134.98	124.5			0.88573	1.0008	NaN	1	0	Median	5456300	2735000	2721300	3329	784	3121	6726	16373;16374;16375;16376;16377;16378	16373	1165	6	9606
ELANSPDCPQMCAYK	1	0	Unmodified	1782.7375	0.73752601	784	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	6	0						1											14.337	14.337	2	0.023589	7344	DP690-6	105.25	83.054			NaN	NaN	NaN	0	0	Median	0	0	0	3330	784	3121	6727	16379	16379		1	9606
ELAPAVSVLQLFCSSPK	1	0	Unmodified	1844.9706	0.97062071	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	no	no	0	0	0	7	4			1								1						23.552	23.552	2	2.1532E-06	21233	DP690-11	162.48	140.01			0.71949	0.88451	NaN	1	0	Median	13289000	5713500	7575800	3331	2515	3122	6728;6729	16380;16381;16382;16383	16381		4	9606
ELAPAWEDTSPEQDNR	0	1	Unmodified	1856.8177	0.81768512	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								16.084	16.084	2	7.4923E-12	9999	DP690-9	186.81	144.99			NaN	NaN	NaN	0	0	Median	3741700	3741700	0	3332	1048	3123	6730	16384;16385	16385		2	9606
ELAQIAGRPTEDEDEKEK	2	1	Unmodified	2056.9913	0.99129239	152	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	2	4	0				1													11.412	11.412	3	0.00018948	3966	DP690-4	106.19	81.489			0.94529	1.0256	NaN	1	0	Median	8376600	4556500	3820200	3333	152	3124	6731	16386;16387	16387		2	9606
ELAQQVQQVAAEYCR	0	1	Unmodified	1791.8574	0.85738187	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	12	0												1					18.492	18.492	2	2.6881E-50	13782	DP690-12	370.17	318.19			0.91884	0.98741	NaN	1	0	Median	526030000	271440000	254590000	3334	517	3125	6732	16388;16389;16390;16391;16392;16393;16394	16392		7	9606
ELAQQVQQVADDYGK	1	0	Unmodified	1690.8162	0.81622856	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11.7	1.6									1		2	1	1	1			17.745	17.745	2	5.3636E-60	13364	DP690-11	277.15	177.17			0.84329	0.96364	12.918	2	0	Median	634630000	524780000	109850000	3335	1793	3126	6733;6734;6735;6736;6737;6738	16395;16396;16397;16398;16399;16400;16401;16402;16403;16404;16405;16406;16407;16408	16395		14	9606
ELASSEQNKNHINNELK	2	0	Unmodified	1966.9708	0.97083172	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	1	10	0										1							10.584	10.584	3	0.00080723	3044	DP690-10	85.493	52.677			0.73675	0.91607	NaN	1	0	Median	84383000	45513000	38869000	3336	1794	3127	6739	16409	16409		1	9606
ELATNLNVGTSSSAASSLK	1	0	Unmodified	1848.9429	0.94288564	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	no	no	0	0	0	10	0										1							16.008	16.008	2	0.00018744	10996	DP690-10	111.66	72.702			0.65872	0.80754	NaN	1	0	Median	30957000	19373000	11584000	3337	103	3128	6740	16410	16410		1	9606
ELATVLSDQPGLLGPK	1	0	Unmodified	1636.9036	0.903587	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	7	4			1								1						19.18	19.18	2	8.6193E-24	14095	DP690-3	267.07	220.12			0.72126	0.81667	9.8026	2	0	Median	123050000	66322000	56731000	3338	2437	3129	6741;6742	16411;16412;16413;16414;16415;16416;16417;16418	16415		8	9606
ELAVQIYEEAR	0	1	Unmodified	1319.6721	0.67213051	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	9.5	3.2				1							2	1					17.409	17.409	2	2.4602E-06	12406	DP690-12	213.53	182.11			0.871	1.0004	8.3246	3	0	Median	290970000	137910000	153060000	3339	96	3130	6743;6744;6745;6746	16419;16420;16421;16422;16423;16424;16425	16424		7	9606
ELAVQIYEEARK	1	1	Unmodified	1447.7671	0.76709352	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	1	11.5	0.5											1	1					15.773	15.773	3	0.0016614	10186	DP690-12	83.137	53.834			0.82535	0.97573	NaN	1	0	Median	155240000	117710000	37531000	3340	96	3131	6747;6748	16426;16427;16428;16429;16430	16430		5	9606
ELDALDANDELTPLGR	0	1	Unmodified	1740.853	0.853008	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	10.5	0.5										1	1						19.492	19.492	2	1.2647E-07	15932	DP690-11	213.63	174.01			0.87854	1.0713	13.908	2	0	Median	177000000	89155000	87849000	3341	1137	3132	6749;6750	16431;16432;16433;16434;16435;16436;16437	16435		7	9606
ELDDATEANEGLSR	0	1	Unmodified	1518.6798	0.67979466	669	P35580	MYH10	Myosin-10	yes	yes	0	0	0	2	0		1															13.885	13.885	2	0.0031451	6384	DP690-2	134.75	100.03			NaN	NaN	NaN	0	0	Median	0	0	0	3342	669	3133	6751	16438	16438		1	9606
ELDEEGSDPPLPGR	0	1	Unmodified	1509.6947	0.69471644	1982	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	0	15	0															2		14.705	14.705	2	0.0031313	8360	DP690-15	133.91	64.636			NaN	NaN	NaN	0	0	Median	0	0	0	3343	1982	3134	6752;6753	16439;16440	16439		2	9606
ELDELMASLSDFK	1	0	Oxidation (M)	1512.7018	0.70177565	786	P49023	PXN	Paxillin	yes	yes	0	1	0	4	0				1													20.014	20.014	2	4.7974E-05	14726	DP690-4	158.05	91.991			0.9048	0.99365	NaN	1	0	Median	14084000	7545800	6538000	3344	786	3135	6754	16441;16442;16443	16441	1168	3	9606
ELDMEPYTVAGVAK	1	0	Oxidation (M)	1537.7334	0.73341013	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	1	0	2	0		1															15.887	15.887	2	0.0027378	8733	DP690-2	92.611	67.773			1.4821	1.4819	NaN	1	0	Median	4192500	1594100	2598400	3345	1803	3136	6755	16444;16445;16446	16445	2376	3	9606
ELDSITPEVLPGWK	1	0	Unmodified	1582.8243	0.82427405	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	11	0											1						20.559	20.559	2	0.00024327	17297	DP690-11	144.55	95.948			0.69277	0.82138	NaN	1	0	Median	111940000	64845000	47094000	3346	1375	3137	6756	16447;16448;16449	16447		3	9606
ELEAENYHDIKR	1	1	Unmodified	1515.7318	0.73177065	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	1	9	0									1								11.193	11.193	3	0.00087267	3618	DP690-9	90.614	71.785			0.907	1.052	NaN	1	0	Median	5376100	2956100	2420000	3347	1080	3138	6757	16450;16451;16452;16453	16453		4	9606
ELEANVLATAPDK	1	0	Unmodified	1369.7089	0.70890994	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	10	0										1							15.841	15.841	2	0.070786	10820	DP690-10	82.494	38.177			NaN	NaN	NaN	0	0	Median	35195000	35195000	0	3348	2215	3139	6758	16454	16454		1	9606
ELEDATETADAMNR	0	1	Oxidation (M)	1580.6624	0.66243003	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	6.57	3.7		2	1						1	3							12.869	12.869	2	3.2506E-15	4677	DP690-2	261.35	248			1.0724	1.2002	16.889	5	0	Median	102750000	49039000	53708000	3349	668	3140	6759;6760;6761;6762;6763;6764;6765	16455;16456;16457;16458;16459;16460;16461;16462;16463;16464;16465;16466;16467;16468;16469;16470;16471;16472	16462	944	18	9606
ELEDATETADAMNR	0	1	Unmodified	1564.6675	0.66751541	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	5	3.56		1	1							1							14.477	14.477	2	2.2353E-05	7121	DP690-2	129	99.457			1.2968	1.3543	NaN	1	0	Median	37249000	29838000	7410500	3350	668	3140	6766;6767;6768	16473;16474;16475;16476;16477	16475		5	9606
ELEDLEGYQNTIVAGSLITK	1	0	Unmodified	2192.1212	0.12124393	254	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	11	0											1						20.93	20.93	2	9.2417E-30	17824	DP690-11	237.46	166.38			NaN	NaN	NaN	0	0	Median	0	0	0	3351	254	3141	6769	16478	16478		1	9606
ELEDPESAMLDTLDR	0	1	Oxidation (M)	1748.7775	0.77745979	1588	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	1	0	12	0												1					17.256	17.256	2	0.00042637	12169	DP690-12	114.72	88.782			0.58191	0.69631	NaN	1	0	Median	26889000	17618000	9270700	3352	1588	3142	6770	16479	16479	2248	1	9606
ELEDPESAMLDTLDR	0	1	Unmodified	1732.7825	0.78254517	1588	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	12	0												1					20.908	20.908	2	1.7959E-05	17020	DP690-12	167.2	109.67			0.79267	0.96458	NaN	1	0	Median	12185000	7272400	4912700	3353	1588	3142	6771	16480;16481;16482	16480		3	9606
ELEDYIDNLLVR	0	1	Unmodified	1490.7617	0.76167379	1510	Q7L804;Q6WKZ4	RAB11FIP2;RAB11FIP1	Rab11 family-interacting protein 2;Rab11 family-interacting protein 1	yes	no	0	0	0	16	0																1	22.813	22.813	2	0.00020742	17706	DP690-16	140.83	101.53			0.59214	0.69312	NaN	1	0	Median	2426900	1391800	1035200	3354	1510	3143	6772	16483;16484;16485;16486;16487	16484		5	9606
ELEEETNAFNR	0	1	Unmodified	1350.6052	0.60517315	1779	Q92599	SEPT8	Septin-8	yes	yes	0	0	0	13	0													1				14.364	14.364	2	0.003764	7943	DP690-13	90.601	40.149			0.81209	0.99805	NaN	1	0	Median	26639000	15495000	11144000	3355	1779	3144	6773	16488;16489	16488		2	9606
ELEEEVNNFQK	1	0	Unmodified	1377.6412	0.64122431	2231	Q9NVA2	SEPT11	Septin-11	yes	yes	0	0	0	13	0													1				14.839	14.839	2	4.3861E-11	8530	DP690-13	189.82	128.26			NaN	NaN	NaN	0	0	Median	30327000	0	30327000	3356	2231	3145	6774	16490;16491	16491		2	9606
ELEEIVQPIISK	1	0	Unmodified	1396.7813	0.7813466	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	4	0				1													18.562	18.562	2	3.4295E-10	12984	DP690-4	248.09	248.09			1.4429	1.5277	NaN	1	0	Median	76423000	30291000	46132000	3357	462	3146	6775	16492;16493;16494	16493		3	9606
ELEELRDKNESLTMR	1	2	Oxidation (M)	1877.9153	0.91529068	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	1	2	10	0										1							12.746	12.746	3	0.040171	6234	DP690-10	51.092	51.092			0.54601	0.63476	NaN	1	0	Median	51014000	35681000	15333000	3358	1301	3147	6776	16495	16495	1994	1	9606
ELEEVSPETPVVPATTQR	0	1	Unmodified	1981.0004	0.0004005156	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							16.196	16.196	2	0.01992	11231	DP690-10	92.151	24.937			NaN	NaN	NaN	0	0	Median	13651000	0	13651000	3359	1319	3148	6777;6778	16496;16497;16498	16496		3	9606
ELEGLAGQLQAQVQDNEGLSR	0	1	Unmodified	2254.119	0.11895252	1138	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	11	0											1						20.202	20.202	2	0.0015144	16846	DP690-11	130.27	98.201			NaN	NaN	NaN	0	0	Median	0	0	0	3360	1138	3149	6779	16499	16499		1	9606
ELEIGQAGSQR	0	1	Unmodified	1186.5942	0.59421454	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	3	0			1														12.984	12.984	2	0.008535	5884	DP690-3	81.338	62.562			0.70752	0.78523	NaN	1	0	Median	5527000	3369500	2157500	3361	1311	3150	6780	16500	16500		1	9606
ELELDELALR	0	1	Unmodified	1199.6398	0.63976774	1197	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	10	0										1							19.787	19.787	2	0.00014087	16469	DP690-10	137.14	75.456			0.79112	0.99086	NaN	1	0	Median	47014000	25392000	21623000	3362	1197	3151	6781	16501;16502;16503	16501		3	9606
ELELEVINLQK	1	0	Unmodified	1326.7395	0.73948179	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										1							19.367	19.367	2	0.00030375	15807	DP690-10	159.28	102.64			0.74736	0.91878	NaN	1	0	Median	47000000	27120000	19880000	3363	311	3152	6782	16504	16504		1	9606
ELELVYAR	0	1	Unmodified	991.53385	0.53384611	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														16.499	16.499	2	0.05847	10653	DP690-3	97.602	0			NaN	NaN	NaN	0	0	Median	0	0	0	3364	1293	3153	6783	16505	16505		1	9606
ELENFFQELEK	1	0	Unmodified	1424.6824	0.68236084	564	P22676	CALB2	Calretinin	yes	yes	0	0	0	7	0							1										21.469	21.469	2	0.0017977	16394	DP690-7	99.788	57.45			0.9886	1.0536	NaN	1	0	Median	2911600	1259900	1651600	3365	564	3154	6784	16506;16507;16508	16508		3	9606
ELENGEVEGEDAFLSSK	1	0	Unmodified	1851.8374	0.83741751	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	11	0											1						17.517	17.517	2	0.0073053	13010	DP690-11	127.71	90.101			NaN	NaN	NaN	0	0	Median	0	0	0	3366	1573	3155	6785	16509	16509		1	9606
ELENLLSQEEEENIVLEEENKK	2	0	Unmodified	2657.292	0.29195067	1294	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	1	9	0									1								18.855	18.855	3	0.0078439	13480	DP690-9	54.857	34.779			1.0602	1.2953	NaN	1	0	Median	5637800	2762400	2875400	3367	1294	3156	6786	16510	16510		1	9606
ELEQANDDLER	0	1	Unmodified	1330.6001	0.60008777	2256	Q9NXR1;Q9GZM8	NDE1;NDEL1	Nuclear distribution protein nudE homolog 1;Nuclear distribution protein nudE-like 1	yes	no	0	0	0	14	0														1			12.893	12.893	2	2.1465E-10	5984	DP690-14	176.33	91.508			NaN	NaN	NaN	0	0	Median	11264000	0	11264000	3368	2256	3157	6787	16511;16512;16513	16513		3	9606
ELEQHIQTSDPENFQSEER	0	1	Unmodified	2315.0302	0.030197094	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	3	0			1														14.156	14.156	3	3.1111999999999998E-21	7486	DP690-3	209.19	169.18			NaN	NaN	NaN	0	0	Median	16142000	0	16142000	3369	1887	3158	6788	16514;16515;16516	16515		3	9606
ELESQISELQEDLESER	0	1	Unmodified	2032.9437	0.9436735	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2.5	0.5		1	1														20.959	20.959	2	2.048E-24	14592	DP690-2	273.74	208.92			1.1848	1.2396	NaN	1	0	Median	5462400	2421800	3040600	3370	668	3159	6789;6790	16517;16518;16519;16520;16521;16522	16518		6	9606
ELETVAAHQFPEVR	0	1	Unmodified	1624.8209	0.82092001	1812	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	12.5	0.5												1	1				15.34	15.34	2	0.0092909	9162	DP690-13	112.5	62.304			NaN	NaN	NaN	0	0	Median	0	0	0	3371	1812	3160	6791;6792	16523;16524	16524		2	9606
ELEVLLMCNK	1	0	Oxidation (M)	1263.6203	0.62029463	1005	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	0	12	4								1								1	16.863	16.863	2	0.0001554	10865	DP690-16	148.99	97.928			0.91728	1.0452	14.505	2	0	Median	66234000	35746000	30488000	3372	1005	3161	6793;6794	16525;16526;16527;16528;16529;16530	16527	1527	6	9606
ELFDDPSYVNVQNLDK	1	0	Unmodified	1894.8949	0.89487281	613	P29353	SHC1	SHC-transforming protein 1	yes	yes	0	0	0	4.5	0.5				1	1												19.49	19.49	2	4.0268E-09	14152	DP690-4	190.35	159.28			0.82652	0.86203	4.2821	2	0	Median	29836000	15182000	14654000	3373	613	3162	6795;6796	16531;16532;16533;16534;16535;16536;16537;16538;16539	16532		9	9606
ELFDVVANPLVNDLIHGK	1	0	Unmodified	1992.068	0.068026571	1092	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	10.3	0.943									1		2						22.935	22.935	3	0.00019317	20477	DP690-11	137.17	110.62			0.57639	0.71176	NaN	1	0	Median	42101000	40881000	1219900	3374	1092	3163	6797;6798;6799	16540;16541;16542;16543;16544;16545;16546	16541		7	9606
ELFFLPLGFALK	1	0	Unmodified	1393.801	0.80095983	2151	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	yes	yes	0	0	0	11	0											1						25.287	25.287	2	0.00018625	23113	DP690-11	122.28	98.961			0.88052	1.0546	NaN	1	0	Median	4171000	2467700	1703300	3375	2151	3164	6800	16547;16548;16549;16550;16551;16552;16553	16547		7	9606
ELFGPELFR	0	1	Unmodified	1106.576	0.57604528	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	10	4						1								1			20.358	20.358	2	0.003138	16092	DP690-14	107.29	53.09			0.81703	0.94064	6.0457	2	0	Median	132370000	74033000	58333000	3376	662	3165	6801;6802	16554;16555;16556;16557;16558	16556		5	9606
ELFPIQMEGVK	1	0	Unmodified	1289.669	0.66895938	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	14	0														1			19.313	19.313	2	0.0082194	14770	DP690-14	81.95	11.134			0.87111	1.0585	NaN	1	0	Median	55523000	29975000	25548000	3377	348	3166	6803	16559	16559		1	9606
ELGELIPLR	0	1	Unmodified	1038.6073	0.6073454	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							18.924	18.924	2	0.014336	15201	DP690-10	106.36	50.68			NaN	NaN	NaN	0	0	Median	33239000	0	33239000	3378	1301	3167	6804	16560	16560		1	9606
ELGGESNFGDALLDAGESMK	1	0	Unmodified	2038.9154	0.91535026	1964	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	0	0	5	0					1												21.199	21.199	2	1.2688999999999999E-50	15863	DP690-5	245.4	202.42			NaN	NaN	NaN	0	0	Median	4903600	0	4903600	3379	1964	3168	6805	16561;16562;16563	16562		3	9606
ELGGESNFGDALLDAGESMK	1	0	Oxidation (M)	2054.9103	0.91026488	1964	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	1	0	5	0					1												19.603	19.603	2	0.01178	13892	DP690-5	100.18	72.13			NaN	NaN	NaN	0	0	Median	0	0	0	3380	1964	3168	6806	16564	16564	2508	1	9606
ELGITALHIK	1	0	Unmodified	1093.6495	0.64954457	971	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	12	4								1								1	16.05	16.05	2	0.00042361	9853	DP690-16	120.87	54.439			0.95116	1.0354	11.343	2	0	Median	343910000	177280000	166620000	3381	971	3169	6807;6808	16565;16566;16567;16568;16569;16570;16571;16572	16568		8	9606
ELGIWEPLAVK	1	0	Unmodified	1253.702	0.70197407	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	12	0												1					20.474	20.474	2	0.0016283	16457	DP690-12	110.76	76.55			0.83468	1.0031	NaN	1	0	Median	24851000	13320000	11531000	3382	791	3170	6809	16573;16574;16575;16576	16573		4	9606
ELGLEKDDKDAIEEK	3	0	Unmodified	1730.8574	0.85742467	682	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	2	11	0											1						12.809	12.809	3	0.027541	6172	DP690-11	56.29	38.152			0.77493	0.83938	NaN	1	0	Median	45173000	23334000	21838000	3383	682	3171	6810	16577	16577		1	9606
ELGLGLGLGLK	1	0	Unmodified	1068.6543	0.6542956	1999	Q9BTD8	RBM42	RNA-binding protein 42	yes	yes	0	0	0	12	0												1					20.124	20.124	2	0.0099882	15972	DP690-12	78.516	25.023			0.89231	1.0828	NaN	1	0	Median	5423100	2791600	2631500	3384	1999	3172	6811	16578	16578		1	9606
ELGLPEELVSR	0	1	Unmodified	1240.6663	0.66631685	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	3.5	0.5			1	1													18.745	18.745	2	8.7068E-05	13230	DP690-4	140.45	69.067			0.75549	0.81386	NaN	1	0	Median	89878000	57165000	32713000	3385	813	3173	6812;6813	16579;16580;16581;16582	16581		4	9606
ELGPDGEEAEGPGAGDGPPR	0	1	Unmodified	1905.8341	0.83406347	528	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	13	0													1				13.774	13.774	2	2.1617E-29	6994	DP690-13	225.33	178.6			NaN	NaN	NaN	0	0	Median	14476000	14476000	0	3386	528	3174	6814	16583;16584	16583		2	9606
ELGSECGIEFDEEK	1	0	Unmodified	1640.6876	0.68758215	699	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	14	0														3			16.371	16.371	2	6.217300000000001E-25	10811	DP690-14	211.63	176.09			NaN	NaN	NaN	0	0	Median	16549000	16549000	0	3387	699	3175	6815;6816;6817	16585;16586;16587;16588	16586		4	9606
ELGVSTNANYK	1	0	Unmodified	1194.5881	0.58806652	1752	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	6	0						1											12.871	12.871	2	0.0012617	5519	DP690-6	104.42	75.506			0.90711	1.0411	NaN	1	0	Median	10709000	5333900	5375600	3388	1752	3176	6818	16589;16590;16591;16592	16589		4	9606
ELHDLFNLPHDRPYFK	1	1	Unmodified	2040.0217	0.02174508	2224	Q9NUQ7	UFSP2	Ufm1-specific protease 2	yes	yes	0	0	1	13	0													1				17.155	17.155	4	0.00027806	11684	DP690-13	96.247	76.354			0.58743	0.64993	NaN	1	0	Median	140240000	88765000	51473000	3389	2224	3177	6819	16593;16594;16595;16596	16593		4	9606
ELHGQNPVVTPCNK	1	0	Unmodified	1591.7777	0.77767498	1363	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	12	0												1					10.771	10.771	3	0.00051712	3230	DP690-12	93.649	74.661			0.99333	1.1878	NaN	1	0	Median	33805000	18038000	15767000	3390	1363	3178	6820	16597;16598	16597		2	9606
ELHINLIPNKQDR	1	1	Unmodified	1588.8685	0.8685389	409	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	3	0			1														14.335	14.335	3	0.0022501	7688	DP690-3	82.705	63.494			1.213	1.3454	NaN	1	0	Median	56003000	24215000	31787000	3391	409	3179	6821	16599;16600	16600		2	9606
ELHNTPYGTASEPSEK	1	0	Unmodified	1758.8061	0.8060578	2257	Q9NXV2	KCTD5	BTB/POZ domain-containing protein KCTD5	yes	yes	0	0	0	15	0															1		11.053	11.053	3	8.1317E-07	3558	DP690-15	123.63	96.168			0.74624	0.87978	NaN	1	0	Median	13003000	6809900	6193000	3392	2257	3180	6822	16601;16602	16601		2	9606
ELHSEFSEVMNEIWASDQIR	0	1	Unmodified	2419.1114	0.1114243	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	11	0											1						22.637	22.637	3	0.064434	20154	DP690-11	36.053	25.128			0.65897	0.81071	NaN	1	0	Median	13400000	8328700	5071700	3393	713	3181	6823	16603	16603		1	9606
ELIAEHKPHIDK	2	0	Unmodified	1428.7725	0.77251325	1102	Q03001	DST	Dystonin	yes	yes	0	0	1	9	0									1								10.355	10.355	3	0.0026305	2590	DP690-9	81.676	60.431			0.46257	0.54052	NaN	1	0	Median	31490000	20929000	10561000	3394	1102	3182	6824	16604;16605	16604		2	9606
ELIFEETAR	0	1	Unmodified	1106.5608	0.56078914	610	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	6	0						1											16.616	16.616	2	0.00021935	10081	DP690-6	164.53	75.391			1.026	1.1482	NaN	1	0	Median	26177000	13079000	13098000	3395	610	3183	6825	16606;16607;16608;16609	16608		4	9606
ELIFQETAR	0	1	Unmodified	1105.5768	0.57677356	600	P27361	MAPK3	Mitogen-activated protein kinase 3	yes	yes	0	0	0	6	0						1											16.1	16.1	2	0.045592	9448	DP690-6	68.846	30.543			0.86731	0.98545	NaN	1	0	Median	4496400	1921400	2575000	3396	600	3184	6826	16610	16610		1	9606
ELIKPPTILR	1	1	Unmodified	1178.7387	0.73869393	2447	Q9Y2T2;P53677	AP3M1;AP3M2	AP-3 complex subunit mu-1;AP-3 complex subunit mu-2	yes	no	0	0	1	13	0													1				15.852	15.852	3	0.005847	9996	DP690-13	77.288	38.72			2.3593	2.9045	NaN	1	0	Median	17445000	5426800	12018000	3397	2447	3185	6827	16611;16612	16611		2	9606
ELIPTEEALR	0	1	Unmodified	1169.6292	0.62920306	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.632									1	3	1						16.661	16.661	2	0.00019372	11937	DP690-10	128.36	89.794			0.79618	0.9269	7.4375	3	0	Plateau	560800000	261200000	299610000	3398	1319	3186	6828;6829;6830;6831;6832	16613;16614;16615;16616;16617;16618;16619;16620;16621;16622;16623;16624	16613		12	9606
ELIQNAEDAGATEVK	1	0	Unmodified	1586.7788	0.77878042	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								15.177	15.177	2	2.2924E-05	8693	DP690-9	147.58	111.05			0.78243	0.98589	NaN	1	0	Median	6352600	3332000	3020600	3399	2272	3187	6833	16625;16626;16627;16628	16625		4	9606
ELIQTSALNFLTPLR	0	1	Unmodified	1714.9618	0.96177059	2456	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	0	0	6	0						1											22.593	22.593	2	1.1882E-06	16881	DP690-6	182.35	182.35			0.84246	0.93227	NaN	1	0	Median	1967400	1053600	913790	3400	2456	3188	6834	16629;16630;16631;16632	16629		4	9606
ELISDNQYR	0	1	Unmodified	1136.5462	0.54620171	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	8.33	3.77			1								2						13.588	13.588	2	0.00026082	7263	DP690-11	161.68	115.67			0.90828	0.94644	10.032	2	0	Median	908910000	518270000	390630000	3401	581	3189	6835;6836;6837	16633;16634;16635;16636;16637;16638	16633		6	9606
ELISLYPFLLPTSSSFTR	0	1	Unmodified	2070.1037	0.10374338	1737	Q8WUH2	TGFBRAP1	Transforming growth factor-beta receptor-associated protein 1	yes	yes	0	0	0	11	0											1						24.512	24.512	2	8.9562E-09	22265	DP690-11	173.19	108.55			NaN	NaN	NaN	0	0	Median	2132300	2132300	0	3402	1737	3190	6838	16639;16640	16639		2	9606
ELISNASDALDK	1	0	Unmodified	1274.6354	0.63541065	416;490	P08238;P14625	HSP90AB1;HSP90B1	Heat shock protein HSP 90-beta;Endoplasmin	no	no	0	0	0	3	0			1														15.324	15.324	2	8.1413E-05	9083	DP690-3	158.79	99.809			0.94647	0.94626	NaN	1	0	Median	315940000	160600000	155340000	3403	416;490	3191	6839	16641;16642;16643;16644	16643		4	9606
ELISNASDALDKIR	1	1	Unmodified	1543.8206	0.82058566	416;490	P08238;P14625	HSP90AB1;HSP90B1	Heat shock protein HSP 90-beta;Endoplasmin	no	no	0	0	1	5.67	3.77			2								1						16.873	16.873	2;3	1.5756E-14	11116	DP690-3	237.76	155.47			0.99683	1.0563	7.9058	3	0	Plateau	446830000	226440000	220390000	3404	416;490	3192	6840;6841;6842	16645;16646;16647;16648;16649;16650;16651;16652	16652		8	9606
ELISNSSDALDK	1	0	Unmodified	1290.6303	0.63032527	409	P07900;Q14568	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	yes	no	0	0	0	3	0			1														14.201	14.201	2	0.00014039	7620	DP690-3	123.79	82.366			1.6179	1.7097	NaN	1	0	Median	37195000	16080000	21116000	3405	409	3193	6843	16653;16654;16655	16655		3	9606
ELISNSSDALDKIR	1	1	Unmodified	1559.8155	0.81550028	409	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	3	0			1														15.524	15.524	3	0.057466	9364	DP690-3	89.624	41.436			NaN	NaN	NaN	0	0	Median	0	0	0	3406	409	3194	6844	16656	16656		1	9606
ELKEGFVEYTEQVVK	2	0	Unmodified	1796.9196	0.919631	82	O00410	IPO5	Importin-5	yes	yes	0	0	1	3	0			2														17.467	17.467	3	2.3213E-07	11938	DP690-3	127.07	102.96			NaN	NaN	NaN	0	0	Median	15383000	15383000	0	3407	82	3195	6845;6846	16657;16658;16659	16657		3	9606
ELKELIQK	2	0	Unmodified	999.59645	0.59644637	393	P06703	S100A6	Protein S100-A6	yes	yes	0	0	1	8	0								1									12.088	12.088	2	7.9137E-13	4786	DP690-8	219.72	4.6286			0.80687	0.93877	NaN	1	0	Median	7513300	4097200	3416100	3408	393	3196	6847	16660	16660		0	9606
ELKIDIIPNPQER	1	1	Unmodified	1563.8621	0.86205654	416	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	1	3	0			2														17.114	17.114	2;3	5.8293E-05	11413	DP690-3	95.183	73.128			0.90807	1.0071	4.5303	2	0	Median	61178000	32327000	28851000	3409	416	3197	6848;6849	16661;16662;16663;16664;16665;16666	16663		6	9606
ELLAALQK	1	0	Unmodified	884.53312	0.53311783	1608	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	11	0											1						15.804	15.804	2	0.075331	10559	DP690-11	92.191	31.897			NaN	NaN	NaN	0	0	Median	0	0	0	3410	1608	3198	6850	16667	16667		1	9606
ELLAFQTSEK	1	0	Unmodified	1164.6027	0.60265396	1803;93	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	no	no	0	0	0	2	0		1															16.265	16.265	2	0.0084285	9246	DP690-2	85.862	41.513			1.6173	1.6265	NaN	1	0	Median	8236700	3066800	5169800	3411	1803;93	3199	6851	16668;16669	16668		2	9606
ELLALDSVDPEGR	0	1	Unmodified	1412.7147	0.7147236	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	4	0				1													18.818	18.818	2	5.2459E-07	13340	DP690-4	167.12	103.69			NaN	NaN	NaN	0	0	Median	6112200	0	6112200	3412	342	3200	6852	16670;16671	16670		2	9606
ELLELASR	0	1	Unmodified	929.5182	0.51819605	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							16.149	16.149	2	0.056977	11179	DP690-10	146.54	26.054			0.78612	0.94843	NaN	1	0	Median	187190000	106760000	80434000	3413	1071	3201	6853	16672	16672		0	9606
ELLELEALSMAVESTGTAK	1	0	Oxidation (M)	2007.0082	0.0081880099	1293	Q14764	MVP	Major vault protein	yes	yes	0	1	0	3	0			1														22.631	22.631	2	1.9425E-08	18166	DP690-3	161.76	104.65			NaN	NaN	NaN	0	0	Median	1668100	1668100	0	3414	1293	3202	6854	16673;16674	16674	1978	2	9606
ELLESNFTLVGDDGTNK	1	0	Unmodified	1850.8898	0.88978743	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	12	0												3					19.316	19.316	2	1.8840000000000002E-45	14981	DP690-12	269.44	223.09			0.72375	0.86996	NaN	1	0	Median	21966000	12874000	9092200	3415	1814	3203	6855;6856;6857	16675;16676;16677	16676		3	9606
ELLESNFTLVGDDGTNKEATSTGK	2	0	Unmodified	2525.2133	0.21330642	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	1	12	0												1					17.478	17.478	3	1.4777E-15	12460	DP690-12	167.35	150.64			0.88441	1.0137	NaN	1	0	Median	60839000	32043000	28796000	3416	1814	3204	6858	16678;16679	16678		2	9606
ELLFLSNANPSLLER	0	1	Unmodified	1714.9254	0.92538508	832	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	14	0														2			21.363	21.363	2	2.3053E-47	17290	DP690-14	261.22	185.8			1.2103	1.4648	NaN	1	0	Median	68395000	26156000	42239000	3417	832	3205	6859;6860	16680;16681;16682;16683	16682		4	9606
ELLIIGGVAAR	0	1	Unmodified	1110.6761	0.67609367	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	8.75	3.49			1						1		1	1					18.374	18.374	2	7.9143E-05	14323	DP690-11	128.61	43.447			0.89118	0.96306	8.1898	3	0	Plateau	149940000	82357000	67586000	3418	1768	3206	6861;6862;6863;6864	16684;16685;16686;16687;16688;16689;16690;16691;16692	16686		9	9606
ELLKDVEVVRPLEK	2	1	Unmodified	1665.9665	0.96652161	781	P48681	NES	Nestin	yes	yes	0	0	2	10	0										1							15.595	15.595	3	0.00062525	10446	DP690-10	99.941	84.945			0.69946	0.79817	NaN	1	0	Median	199280000	106620000	92663000	3419	781	3207	6865	16693	16693		1	9606
ELLLPNWQGSGSHGLTIAQR	0	1	Unmodified	2176.1389	0.1389001	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10	1									1		1						18.735	18.735	3	1.977E-23	13259	DP690-9	217.35	217.35			0.77669	0.9449	12.271	2	0	Median	95718000	52119000	43599000	3420	1145	3208	6866;6867	16694;16695;16696;16697;16698;16699;16700	16700		7	9606
ELLLQPVTISR	0	1	Unmodified	1267.75	0.7499869	917	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	0	0	13	3.56								1							1	1	18.464	18.464	2	2.7946E-06	12777	DP690-16	202.05	137.79			0.80207	0.87791	14.967	3	0	Median	124980000	68410000	56568000	3421	917	3209	6868;6869;6870	16701;16702;16703;16704;16705;16706;16707;16708;16709	16703		9	9606
ELLLTGPGLEER	0	1	Unmodified	1325.7191	0.7190807	1645	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	12	0												1					18.046	18.046	2	0.0004001	13265	DP690-12	115.23	115.23			0.78287	0.92829	NaN	1	0	Median	40195000	21797000	18399000	3422	1645	3210	6871	16710;16711;16712	16710		3	9606
ELLNPVVEFVSHPSTTCR	0	1	Unmodified	2084.0361	0.036074515	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.33	0.471									2	1							19.347	19.347	2;3	5.1040000000000005E-30	13993	DP690-9	236.12	220.23			0.74234	0.8731	18.269	2	0	Median	183210000	107590000	75625000	3423	1046	3211	6872;6873;6874	16713;16714;16715;16716;16717;16718	16715		6	9606
ELLQPWTETPR	0	1	Unmodified	1368.7038	0.70376498	2555				yes	yes	0	0	0	12	0												1					19.935	19.935	2	0.00063668	15775	DP690-12	109.83	61.739	+		0.28413	0.34615	NaN	1	0	Median	9198700	5655300	3543400	3424	2555	3212	6875	16719;16720	16720		2	9606
ELLQSFDSALQSVK	1	0	Unmodified	1563.8144	0.81443765	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	10	0.816									1	1	1						20.853	20.853	2	0.00034119	15924	DP690-9	142.76	63.615			NaN	NaN	NaN	0	0	Median	92580000	70322000	22258000	3425	808	3213	6876;6877;6878	16721;16722;16723;16724;16725	16725		5	9606
ELLSMHHQPDPALTK	1	0	Oxidation (M)	1731.8614	0.86140461	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	1	0	2	0		1															11.854	11.854	3	0.0017178	3978	DP690-2	80.706	80.706			0.78059	0.78658	NaN	1	0	Median	11707000	6328100	5379300	3426	2418	3214	6879	16726;16727;16728;16729;16730	16727	2840	5	9606
ELLSNVDEGIYQLEK	1	0	Unmodified	1748.8832	0.88324549	1800	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	11	0											1						20.253	20.253	2	0.006608	16921	DP690-11	132.5	132.5			1.4479	1.7499	NaN	1	0	Median	46575000	24348000	22227000	3427	1800	3215	6880	16731	16731		0	9606
ELLTLDEKDPR	1	1	Unmodified	1327.6983	0.69834526	760	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	15	0															1		14.398	14.398	2	8.7002E-05	8010	DP690-15	188.91	145.83			0.77079	0.84812	NaN	1	0	Median	130750000	71253000	59498000	3428	760	3216	6881	16732;16733	16733		2	9606
ELLTSFGPLK	1	0	Unmodified	1103.6227	0.62266112	592	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	12	0												1					18.993	18.993	2	0.042883	14627	DP690-12	66.621	17.525			0.80645	0.96141	NaN	1	0	Median	71891000	39718000	32173000	3429	592	3217	6882	16734;16735	16734		2	9606
ELLTTMGDR	0	1	Unmodified	1034.5066	0.50664508	123	O14950;P19105;P24844	MYL12B;MYL12A;MYL9	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9	yes	no	0	0	0	8	0								1									14.758	14.758	2	0.0063627	7807	DP690-8	94.302	33.341			1.1459	1.3678	NaN	1	0	Median	4218300	1798300	2420100	3430	123	3218	6883	16736;16737	16737		2	9606
ELLTTMGDRFTDEEVDELYR	0	2	Oxidation (M)	2447.1162	0.11623491	123	O14950;P19105	MYL12B;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A	yes	no	0	1	1	8	0								1									18.642	18.642	3	0.00021407	12162	DP690-8	96.153	81.991			1.2416	1.3118	NaN	1	0	Median	4252600	2057100	2195500	3431	123	3219	6884	16738;16739;16740;16741	16741	135	4	9606
ELLVHLDDPER	0	1	Unmodified	1334.683	0.68302954	1591	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	3	0			1														15.761	15.761	3	0.053092	9716	DP690-3	48.115	33.239			1.1129	1.2677	NaN	1	0	Median	12395000	6458800	5936100	3432	1591	3220	6885	16742;16743	16743		2	9606
ELLYGGTSPTAETILK	1	0	Unmodified	1691.8982	0.89816728	340	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	12	0												1					18.593	18.593	2	0.00020331	14051	DP690-12	130.44	107.52			0.73778	0.88303	NaN	1	0	Median	32461000	18190000	14272000	3433	340	3221	6886	16744;16745	16745		2	9606
ELMNLTGTIPVPYR	0	1	Oxidation (M)	1618.8389	0.83887826	1958	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	1	0	13	0													1				18.664	18.664	2	1.734E-07	13709	DP690-13	195.83	195.83			0.76995	0.9293	NaN	1	0	Median	74843000	38911000	35932000	3434	1958	3222	6887	16746;16747	16746	2496	2	9606
ELMQVVLAR	0	1	Oxidation (M)	1073.5903	0.59031513	958	P61966	AP1S1	AP-1 complex subunit sigma-1A	yes	yes	0	1	0	16	0																1	14.548	14.548	2	0.021122	7929	DP690-16	86.794	41.712			0.84259	0.95067	NaN	1	0	Median	50866000	25754000	25112000	3435	958	3223	6888	16748;16749;16750;16751	16749	1472	4	9606
ELNLSFCEIK	1	0	Unmodified	1251.6169	0.61692381	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					18.586	18.586	2	0.00019227	14004	DP690-12	128.6	57.683			1.1459	1.3728	NaN	1	0	Median	31092000	15280000	15812000	3436	750	3224	6889	16752;16753;16754;16755;16756	16753		5	9606
ELNLVLSVR	0	1	Unmodified	1041.6182	0.61824444	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															18.411	18.411	2	0.0024164	11706	DP690-2	110.41	78.537			0.71601	0.7451	NaN	1	0	Median	42668000	24424000	18244000	3437	789	3225	6890	16757;16758	16758		2	9606
ELNMIIMLPDETTDLR	0	1	2 Oxidation (M)	1934.9329	0.93291458	661	P35237	SERPINB6	Serpin B6	yes	yes	0	2	0	6	0						1											20.128	20.128	2	8.5509E-07	14211	DP690-6	152	127.31			0.60137	0.68487	NaN	1	0	Median	4881300	3442200	1439100	3438	661	3226	6891	16759;16760;16761	16760	928;929	3	9606
ELNNTCEPVVTQPK	1	0	Unmodified	1627.7876	0.78757097	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														13.156	13.156	2	0.073596	6175	DP690-3	105.13	57.29			NaN	NaN	NaN	0	0	Median	0	0	0	3439	1778	3227	6892	16762	16762		1	9606
ELNNTCEPVVTQPKPK	2	0	Unmodified	1852.9353	0.93529784	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	1	3	0			1														11.807	11.807	3	0.017273	4428	DP690-3	56.774	56.774			0.70699	0.76872	NaN	1	0	Median	11659000	6235300	5423800	3440	1778	3228	6893	16763;16764;16765	16765		3	9606
ELNPEEGEMVEEK	1	0	Oxidation (M)	1547.6661	0.66611843	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	1	0	9	0									1								13.119	13.119	2	0.00018746	5976	DP690-9	139.32	110.75			0.74195	0.94206	NaN	1	0	Median	7623900	4169100	3454900	3441	2411	3229	6894	16766;16767;16768;16769	16767	2834	4	9606
ELNPSLNFK	1	0	Unmodified	1060.5553	0.55530983	10	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	2	0		1															15.936	15.936	2	0.065676	8876	DP690-2	62.582	35.889			0.90217	0.88809	NaN	1	0	Median	2107700	1147400	960320	3442	10	3230	6895	16770	16770		1	9606
ELPAAVAPAGPASLAR	0	1	Unmodified	1489.8253	0.8252771	315	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	7	0							1										16.503	16.503	2	0.00032025	10189	DP690-7	110.64	110.64			0.56042	0.63757	NaN	1	0	Median	23156000	15615000	7541400	3443	315	3231	6896	16771;16772;16773	16771		3	9606
ELPGHTGYLSCCR	0	1	Unmodified	1548.6813	0.68133176	1001	P62879;Q9HAV0	GNB2;GNB4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4	yes	no	0	0	0	14	0														1			12.929	12.929	3	0.0014632	5969	DP690-14	86.288	73.868			0.62218	0.74588	NaN	1	0	Median	93357000	62988000	30368000	3444	1001	3232	6897	16774;16775	16775		2	9606
ELPGQTLHWGPEATEAAGR	0	1	Unmodified	2018.981	0.98100248	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							16.406	16.406	3	0.0051327	11554	DP690-10	61.015	61.015			0.75502	0.91942	NaN	1	0	Median	165850000	100110000	65740000	3445	1254	3233	6898	16776	16776		1	9606
ELPPDQAEYCIAR	0	1	Unmodified	1560.7242	0.72424243	476;186	P12814;O43707	ACTN1;ACTN4	Alpha-actinin-1;Alpha-actinin-4	no	no	0	0	0	11	0											2						15.498	15.498	2	0.031979	10073	DP690-11	93.096	37.375			NaN	NaN	NaN	0	0	Median	0	0	0	3446	476;186	3234	6899;6900	16777;16778	16777		2	9606
ELPSFVGEK	1	0	Unmodified	1004.5179	0.51786169	612	P29034	S100A2	Protein S100-A2	yes	yes	0	0	0	12	4								1								1	15.884	15.884	2	0.011367	9062	DP690-8	88.177	41.751			1.2768	1.4138	109.9	2	0	Median	84056000	38991000	45065000	3447	612	3235	6901;6902	16779;16780;16781	16781		3	9606
ELPSFVGEKVDEEGLKK	3	0	Unmodified	1902.9939	0.99385857	612	P29034	S100A2	Protein S100-A2	yes	yes	0	0	2	12	4								1								1	15.381	15.381	3	5.4778E-05	8466	DP690-8	120.63	95.262			1.2004	1.4054	118.33	2	0	Median	54798000	32394000	22403000	3448	612	3236	6903;6904	16782;16783;16784;16785;16786;16787;16788	16787		7	9606
ELPTAFDYVEFTR	0	1	Unmodified	1586.7617	0.76167379	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							21.072	21.072	2	0.0018799	18255	DP690-10	92.866	74.598			0.76674	0.95999	NaN	1	0	Median	57726000	33299000	24427000	3449	1236	3237	6905	16789	16789		1	9606
ELQAHGADELLK	1	0	Unmodified	1322.683	0.68302954	139	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	14	0														1			13.68	13.68	3	0.0094522	7058	DP690-14	68.515	36.918			0.56725	0.68973	NaN	1	0	Median	48699000	31664000	17035000	3450	139	3238	6906	16790;16791	16790		2	9606
ELQALEEELR	0	1	Unmodified	1228.6299	0.62993134	1562	Q86SX3	C14orf80	Uncharacterized protein C14orf80	yes	yes	0	0	0	13	0													1				17.685	17.685	2	0.0032082	12464	DP690-13	130.66	50.218			NaN	NaN	NaN	0	0	Median	6695000	0	6695000	3451	1562	3239	6907	16792;16793	16792		2	9606
ELQDSTQMNEK	1	0	Unmodified	1321.582	0.58199487	1228	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	3	0			1														10.956	10.956	2	9.4041E-33	3354	DP690-3	229.48	143.81			NaN	NaN	NaN	0	0	Median	8689200	0	8689200	3452	1228	3240	6908	16794;16795	16795		2	9606
ELQELNELFKPVVAAQK	2	0	Unmodified	1955.0728	0.072777598	1732	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	1	12	0												2					19.484	19.484	2;3	5.7863E-08	15301	DP690-12	166.52	119.84			0.85458	0.97777	NaN	1	0	Median	65773000	35216000	30557000	3453	1732	3241	6909;6910	16796;16797;16798	16797		3	9606
ELQELVQYPVEHPDK	1	0	Unmodified	1822.9101	0.91012895	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	3	0			1														16.029	16.029	3	0.00037896	10013	DP690-3	95.854	70.972			1.1103	1.1936	NaN	1	0	Median	19186000	7295800	11890000	3454	893	3242	6911	16799;16800	16799		2	9606
ELQEVIQQQNEK	1	0	Unmodified	1484.7471	0.74708636	1917	Q96R06	SPAG5	Sperm-associated antigen 5	yes	yes	0	0	0	11	0											1						13.477	13.477	2	0.00084125	7143	DP690-11	131.09	49.75			NaN	NaN	NaN	0	0	Median	0	0	0	3455	1917	3243	6912	16801	16801		1	9606
ELQNTAVAEGQVVVLECR	0	1	Unmodified	2014.0153	0.015339073	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	10.8	0.433										1	3						18.104	18.104	2	3.1982E-29	13674	DP690-11	244.44	186.87			NaN	NaN	NaN	0	0	Median	0	0	0	3456	1758	3244	6913;6914;6915;6916	16802;16803;16804;16805	16803		4	9606
ELQSQIQEAR	0	1	Unmodified	1200.6099	0.6098646	2309	Q9P2X0	DPM3	Dolichol-phosphate mannosyltransferase subunit 3	yes	yes	0	0	0	12	4								1								1	12.176	12.176	2	0.00018734	4850	DP690-16	129.42	39.872			0.77191	0.89774	NaN	1	0	Median	22690000	12590000	10100000	3457	2309	3245	6917;6918	16806;16807;16808;16809	16807		4	9606
ELQSQISDTSVVLSMDNSR	0	1	Oxidation (M)	2124.0005	0.0004768701	38	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	1	0	12	0												1					16.96	16.96	2	1.4099E-05	11755	DP690-12	147.39	102.85		+	NaN	NaN	NaN	0	0	Median	5829200	5829200	0	3458	38	3246	6919	16810	16810	39	1	9606
ELQVLSEQYSQK	1	0	Unmodified	1450.7304	0.73037367	2101	Q9H2D6	TRIOBP	TRIO and F-actin-binding protein	yes	yes	0	0	0	12	0												1					15.532	15.532	2	8.649E-05	9780	DP690-12	155.53	83.92			NaN	NaN	NaN	0	0	Median	20449000	0	20449000	3459	2101	3247	6920	16811	16811		1	9606
ELQYLQGHLVSSDLSPR	0	1	Unmodified	1940.9956	0.99558991	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								16.961	16.961	3	0.00099823	10963	DP690-9	79.393	46.467			1.0955	1.3674	NaN	1	0	Median	15198000	9017200	6180600	3460	2217	3248	6921	16812;16813	16813		2	9606
ELSAEFGPGGR	0	1	Unmodified	1118.5356	0.53563702	2259	Q9NXW9	ALKBH4	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4	yes	yes	0	0	0	6	0						1											14.477	14.477	2	0.0073441	7541	DP690-6	107.69	68.147			NaN	NaN	NaN	0	0	Median	6523900	6523900	0	3461	2259	3249	6922	16814;16815	16815		2	9606
ELSAVTFPDIIR	0	1	Unmodified	1359.7398	0.73981614	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	3	0			1														20.581	20.581	2	1.0105E-09	15771	DP690-3	237.51	188.41			0.75226	0.84666	NaN	1	0	Median	32143000	17620000	14524000	3462	724	3250	6923	16816;16817;16818;16819	16818		4	9606
ELSCTELQELK	1	0	Unmodified	1348.6544	0.65443153	2391	Q9ULP9	TBC1D24	TBC1 domain family member 24	yes	yes	0	0	0	12	0												1					16.103	16.103	2	0.0001201	10583	DP690-12	125.71	91.626			0.96134	1.1345	NaN	1	0	Median	84098000	42843000	41255000	3463	2391	3251	6924	16820	16820		1	9606
ELSDFISYLQR	0	1	Unmodified	1369.6878	0.68778057	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	8	4				1								1					21.685	21.685	2	2.5216E-06	16526	DP690-4	221.94	178.86			0.90028	1.0323	NaN	1	0	Median	32795000	22975000	9819900	3464	623	3252	6925;6926	16821;16822;16823;16824;16825	16823		5	9606
ELSDLESAR	0	1	Unmodified	1018.4931	0.49310351	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															13.76	13.76	2	0.013517	6233	DP690-2	127.46	42.546			NaN	NaN	NaN	0	0	Median	0	0	0	3465	602	3253	6927	16826	16826		1	9606
ELSDPAGAIIYTSR	0	1	Unmodified	1491.7569	0.75692277	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	3	0			1														17.592	17.592	2	8.4168E-05	12130	DP690-3	160.18	122.63			0.91692	1.0552	NaN	1	0	Median	17532000	9611200	7921100	3466	134	3254	6928	16827;16828	16827		2	9606
ELSDSVTLSSSDR	0	1	Unmodified	1394.6525	0.65251728	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	9.8	4.17			1						1	1	1					1	14.498	14.498	2	1.0051E-10	8696	DP690-10	232.88	191.45			0.80334	0.91355	14.807	5	0	Median	576350000	317760000	258590000	3467	272	3255	6929;6930;6931;6932;6933	16829;16830;16831;16832;16833;16834;16835;16836;16837;16838;16839;16840;16841;16842;16843;16844;16845;16846	16829		18	9606
ELSFVLDYINQSPK	1	0	Unmodified	1651.8457	0.84573777	1605	Q8IWA0	WDR75	WD repeat-containing protein 75	yes	yes	0	0	0	11	0											1						21.551	21.551	2	0.040697	18779	DP690-11	59.367	2.218			0.7212	0.88673	NaN	1	0	Median	19594000	10209000	9385000	3468	1605	3256	6934	16847	16847		1	9606
ELSGLGSALK	1	0	Unmodified	973.54441	0.5444108	800	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1													15.428	15.428	2	0.013859	9076	DP690-4	78.264	19.482			0.81067	0.88021	NaN	1	0	Median	24238000	14007000	10231000	3469	800	3257	6935	16848;16849;16850	16850		3	9606
ELSHEDLEPPPEHIPPPPRPPK	1	1	Unmodified	2507.2809	0.28087289	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	1	13	0													2				14.108	14.108	4;5	1.2058E-06	7509	DP690-13	155.94	130.86			NaN	NaN	NaN	0	0	Median	175280000	175280000	0	3470	521	3258	6936;6937	16851;16852;16853;16854	16853		4	9606
ELSLAGNELGDEGAR	0	1	Unmodified	1529.7322	0.73216458	482	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	5	0					1												16.507	16.507	2	1.9489E-05	9962	DP690-5	166.11	127.83			2.0591	2.1518	NaN	1	0	Median	40960000	12607000	28353000	3471	482	3259	6938	16855	16855		1	9606
ELSLIPFLCPER	0	1	Unmodified	1472.7697	0.76973606	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								22.996	22.996	2	0.00013967	18310	DP690-9	135.55	109.11			0.57939	0.71018	NaN	1	0	Median	2224600	1256500	968090	3472	2272	3260	6939	16856;16857	16856		2	9606
ELSQIEACQGPMQMR	0	1	2 Oxidation (M)	1808.7855	0.78553883	1908	Q96P70	IPO9	Importin-9	yes	yes	0	2	0	3	0			1														13.286	13.286	2	1.5992E-05	6315	DP690-3	146.11	105.38			0.87601	0.98452	NaN	1	0	Median	8171400	4573800	3597600	3473	1908	3261	6940	16858;16859;16860;16861;16862	16858	2447;2448	5	9606
ELSQIEAELNK	1	0	Unmodified	1272.6561	0.65614609	1427	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	10	0										1							16.884	16.884	2	0.0079182	12234	DP690-10	106.88	52.158			NaN	NaN	NaN	0	0	Median	44318000	44318000	0	3474	1427	3262	6941	16863	16863		1	9606
ELSQNTDESGLNDEAIAK	1	0	Unmodified	1932.8912	0.891244	664	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	10	0										1							14.701	14.701	2	0.0090678	9081	DP690-10	116.19	85.625			NaN	NaN	NaN	0	0	Median	0	0	0	3475	664	3263	6942	16864	16864		1	9606
ELSSALTTPEMQK	1	0	Oxidation (M)	1449.7021	0.70211	2308	Q9P2W1	PSMC3IP	Homologous-pairing protein 2 homolog	yes	yes	0	1	0	15	0															1		13.891	13.891	2	0.0009023	7359	DP690-15	108.31	76.095			0.74464	0.87789	NaN	1	0	Median	12938000	7003000	5935300	3476	2308	3264	6943	16865;16866;16867;16868	16868	2755	4	9606
ELSSEPQTPPAQK	1	0	Unmodified	1410.6991	0.69907354	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9.5	0.5									1	1							10.837	10.837	2	4.6765E-05	3076	DP690-9	146.11	146.11			0.58701	0.74588	NaN	1	0	Median	19936000	17390000	2546200	3477	1048	3265	6944;6945	16869;16870;16871;16872;16873;16874	16870		6	9606
ELSTTLNADEAVTR	0	1	Unmodified	1518.7526	0.75256567	654	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	3	0			2														15.331	15.331	2	0.00055316	9036	DP690-3	140.63	71.971			NaN	NaN	NaN	0	0	Median	18212000	7434500	10778000	3478	654	3266	6946;6947	16875;16876;16877;16878	16876		4	9606
ELSVEEQIKR	1	1	Unmodified	1229.6616	0.66156582	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	11	0											2						12.899	12.899	2;3	0.00096131	6298	DP690-11	106.2	73.879			0.97762	1.1318	18.315	2	0	Median	248110000	125360000	122750000	3479	2340	3267	6948;6949	16879;16880;16881;16882;16883;16884;16885	16881		7	9606
ELTAGNNVENQVPPR	0	1	Unmodified	1636.8169	0.81689726	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	11	0											1						13.446	13.446	2	0.00015746	7221	DP690-11	168.3	109.93			NaN	NaN	NaN	0	0	Median	10015000	10015000	0	3480	2302	3268	6950	16886;16887	16887		2	9606
ELTDFLQAETDKLEDEK	2	0	Unmodified	2022.9633	0.96334631	499	P15407	FOSL1	Fos-related antigen 1	yes	yes	0	0	1	14	0														1			20.285	20.285	3	0.00010042	16025	DP690-14	112.57	87.978			0.94056	1.0579	NaN	1	0	Median	16612000	5605300	11007000	3481	499	3269	6951	16888;16889;16890	16889		3	9606
ELTLGNLLR	0	1	Unmodified	1027.6026	0.60259438	2119	Q9H4H8	FAM83D	Protein FAM83D	yes	yes	0	0	0	12	0												1					19.842	19.842	2	0.0016554	15693	DP690-12	118.74	61.696			0.91812	1.1084	NaN	1	0	Median	16538000	8388100	8150000	3482	2119	3270	6952	16891	16891		1	9606
ELTLLGKPK	2	0	Unmodified	997.61718	0.61718181	1069	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	1	15	0															1		13.335	13.335	2	0.045644	6451	DP690-15	87.696	36.361			0.78015	0.89424	NaN	1	0	Median	299460000	163820000	135650000	3483	1069	3271	6953	16892;16893	16892		2	9606
ELTLQDVELLK	1	0	Unmodified	1299.7286	0.72858275	1177	Q13049	TRIM32	E3 ubiquitin-protein ligase TRIM32	yes	yes	0	0	0	8	4				1								1					20.387	20.387	2	0.0062978	16461	DP690-12	114.5	41.853			1.2833	1.3706	NaN	1	0	Median	2164000	957260	1206800	3484	1177	3272	6954;6955	16894;16895	16894		2	9606
ELTMASLPFTFDVER	0	1	Oxidation (M)	1770.8498	0.84983687	2088	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	1	0	3	0			2														21.109	21.109	2	0.034688	16524	DP690-3	92.781	52.903			NaN	NaN	NaN	0	0	Median	2634800	0	2634800	3485	2088	3273	6956;6957	16896;16897	16897	2601	2	9606
ELTNQQEASVER	0	1	Unmodified	1402.6688	0.66883604	1263	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	3	0			1														11.37	11.37	2	1.3508E-07	3843	DP690-3	198.25	135.03			1.3097	1.4674	NaN	1	0	Median	7432200	3029400	4402800	3486	1263	3274	6958	16898;16899;16900;16901	16898		4	9606
ELTTEIDNNIEQISSYK	1	0	Unmodified	1995.9637	0.96368066	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.6	2.42	1	1	1	1				1									19.909	19.909	2	7.0959E-36	11532	DP690-1	270.93	165.9		+	NaN	NaN	NaN	0	0	Median	20252000	20252000	0	3487	42	3275	6959;6960;6961;6962;6963	16902;16903;16904;16905;16906;16907;16908;16909;16910;16911	16903		10	9606
ELTTEIDNNIEQISSYKSEITELRR	1	2	Unmodified	2980.4989	0.49892375	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	2	16	0																1	19.84	19.84	4	0.00017513	14512	DP690-16	118.37	42.353		+	NaN	NaN	NaN	0	0	Median	7079400	7079400	0	3488	42	3276	6964	16912	16912		1	9606
ELTVSNNDINEAGVR	0	1	Unmodified	1629.7958	0.79582747	482	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	5	0					1												14.943	14.943	2	9.4195E-10	7975	DP690-5	225.93	156.28			3.1988	3.3389	NaN	1	0	Median	46391000	13011000	33380000	3489	482	3277	6965	16913;16914;16915;16916;16917	16914		5	9606
ELTYQNTDLSEIKEEEQVK	2	0	Unmodified	2295.1118	0.11180146	1384	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	1	3	0			1														16.246	16.246	3	0.00017219	10305	DP690-3	102.69	84.865			1.0274	1.1153	NaN	1	0	Median	13767000	7328600	6438400	3490	1384	3278	6966	16918;16919;16920;16921	16919		4	9606
ELVAVLREPE	0	1	Unmodified	1153.6343	0.63428844	1485	Q6P1K2	PMF1	Polyamine-modulated factor 1	yes	yes	0	0	1	15	0															1		16.803	16.803	2	0.0016165	11192	DP690-15	120.99	96.959			0.71501	0.83051	NaN	1	0	Median	22226000	12660000	9566000	3491	1485	3279	6967	16922;16923;16924	16924		3	9606
ELVDDSVNNVR	0	1	Unmodified	1258.6153	0.61534391	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	7	0							1										13.904	13.904	2	4.9668E-05	6996	DP690-7	178.94	118.03			0.84181	0.9117	NaN	1	0	Median	87666000	44746000	42919000	3492	557	3280	6968	16925;16926	16925		2	9606
ELVGPPLAETVFTPK	1	0	Unmodified	1596.8763	0.87630962	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.5	0.5									1	1							20.16	20.16	2	1.3421E-05	16937	DP690-10	150.09	128.43			0.62704	0.78758	3.6663	2	0	Median	69786000	41765000	28022000	3493	808	3281	6969;6970	16927;16928;16929;16930;16931;16932;16933	16929		7	9606
ELVLLLLQWMR	0	1	Unmodified	1412.8214	0.8213777	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0										1							26.546	26.546	2	0.00010722	24777	DP690-10	160.11	142.24			0.79767	0.95331	NaN	1	0	Median	2723500	1654900	1068600	3494	1319	3282	6971	16934;16935;16936;16937;16938	16934		5	9606
ELVLLLLQWMR	0	1	Oxidation (M)	1428.8163	0.81629232	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9	0									1								24.142	24.142	2	0.00017626	19600	DP690-9	144.09	130.28			0.8314	1.0041	NaN	1	0	Median	1777700	950370	827310	3495	1319	3282	6972	16939;16940;16941;16942	16942	2017	4	9606
ELVLNGADTAVNK	1	0	Unmodified	1342.7092	0.70924429	1416	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	3	0			1														14.867	14.867	2	0.0070862	8565	DP690-3	78.653	38.651			0.78648	0.8281	NaN	1	0	Median	7727500	4352200	3375300	3496	1416	3283	6973	16943	16943		1	9606
ELVPSSDPIVFVVGAFAHGK	1	0	Unmodified	2068.0993	0.099326699	1801	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	0	0	0	15	0															1		22.961	22.961	3	0.0017651	18257	DP690-15	71.558	60.4			0.6383	0.72394	NaN	1	0	Median	1697600	940950	756660	3497	1801	3284	6974	16944;16945;16946;16947	16946		4	9606
ELVQTEIQER	0	1	Unmodified	1243.6408	0.64083038	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								13.997	13.997	2	0.00067541	7127	DP690-9	113.62	25.983			0.92784	1.159	NaN	1	0	Median	12169000	6751200	5417700	3498	1762	3285	6975	16948;16949;16950;16951	16949		4	9606
ELVQTVLAR	0	1	Unmodified	1027.6026	0.60259438	906	P56377	AP1S2	AP-1 complex subunit sigma-2	yes	yes	0	0	0	16	0																1	15.823	15.823	2	0.006065	9594	DP690-16	95.502	24			0.8471	0.9852	NaN	1	0	Median	14846000	7355600	7489900	3499	906	3286	6976	16952;16953	16953		2	9606
ELVTQQLPHLLK	1	0	Unmodified	1417.8293	0.82929985	1944	Q99584	S100A13	Protein S100-A13	yes	yes	0	0	0	12	4								1								1	17.057	17.057	2;3	8.213E-05	11157	DP690-16	125.71	101.19			0.72832	0.85308	NaN	1	0	Median	13793000	5310200	8482400	3500	1944	3287	6977;6978	16954;16955;16956;16957;16958;16959	16955		6	9606
ELVYPPDYNPEGK	1	0	Unmodified	1519.7195	0.71947463	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	8	4				1								1					16.227	16.227	2	3.6268E-05	10693	DP690-12	129	97.404			0.61633	0.73476	NaN	1	0	Median	48325000	23030000	25295000	3501	479	3288	6979;6980	16960;16961;16962;16963;16964;16965;16966	16961		7	9606
ELWTILLGR	0	1	Unmodified	1099.639	0.63897988	1427	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	10	0										1							22.658	22.658	2	0.012699	20376	DP690-10	86.833	60.728			0.90654	1.135	NaN	1	0	Median	14360000	8056800	6303700	3502	1427	3289	6981	16967;16968;16969	16968		3	9606
ELYDKGGEQAIK	2	0	Unmodified	1349.6827	0.68269519	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	1	13	0													1				11.598	11.598	3	0.00020186	4239	DP690-13	126.12	42.335			1.0205	1.1352	NaN	1	0	Median	114590000	54803000	59789000	3503	636	3290	6982	16970;16971;16972;16973	16973		4	9606
ELYGQVLYR	0	1	Unmodified	1139.5975	0.597509	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11	0											1						16.401	16.401	2	0.0098587	11548	DP690-11	104.45	63.419			0.71164	0.82192	NaN	1	0	Median	182000000	103630000	78361000	3504	288	3291	6983	16974	16974		1	9606
ELYGVGVEK	1	0	Unmodified	992.51786	0.51786169	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	14	0														1			14.146	14.146	2	0.0046376	7692	DP690-14	101.25	29.957			0.79413	0.94202	NaN	1	0	Median	144240000	75639000	68601000	3505	712	3292	6984	16975;16976;16977	16976		3	9606
ELYIQHAKEDETR	1	1	Unmodified	1630.7951	0.79509919	1069	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	1	15	0															1		10.774	10.774	3	0.01633	3262	DP690-15	67.997	42.548			0.79249	0.90238	NaN	1	0	Median	44407000	24582000	19825000	3506	1069	3293	6985	16978;16979;16980;16981	16980		4	9606
ELYLFDVLR	0	1	Unmodified	1166.6336	0.63356015	418	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	4	0				1													22.707	22.707	2	0.00088838	17531	DP690-4	141.52	82.703			NaN	NaN	NaN	0	0	Median	4560400	0	4560400	3507	418	3294	6986	16982;16983;16984;16985	16983		4	9606
EMACTTGVLQTLTLFK	1	0	Oxidation (M)	1827.9111	0.91105692	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	1	0	4.5	0.5				1	1												21.79	21.79	2	1.0581E-06	16493	DP690-5	148.96	108.34			0.9124	0.9423	13.605	2	0	Median	86973000	47732000	39241000	3508	2385	3295	6987;6988	16986;16987;16988;16989;16990;16991;16992;16993;16994	16993	2811	9	9606
EMAEIRDQMQQQLNDYEQLLDVK	1	1	2 Oxidation (M)	2868.327	0.32697274	544	P20700	LMNB1	Lamin-B1	yes	yes	0	2	1	12	0												1					19.158	19.158	3	0.0021789	14813	DP690-12	59.547	43.842			1.1086	1.4261	NaN	1	0	Median	24109000	12998000	11111000	3509	544	3296	6989	16995	16995	693;694	1	9606
EMAEIRDQMQQQLNDYEQLLDVK	1	1	Oxidation (M)	2852.3321	0.33205812	544	P20700	LMNB1	Lamin-B1	yes	yes	0	1	1	12	0												1					21.492	21.492	3	0.0011863	17732	DP690-12	71.202	42.697			0.74319	0.90128	NaN	1	0	Median	4609300	2394700	2214600	3510	544	3296	6990	16996	16996	693;694	1	9606
EMAIPVLEAR	0	1	Oxidation (M)	1143.5958	0.59579444	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	1	0	11	0											1						16.114	16.114	2	0.00032123	11047	DP690-11	128.36	91.966			0.85208	0.99933	NaN	1	0	Median	149310000	80576000	68731000	3511	891	3297	6991	16997;16998;16999;17000	16997	1350	4	9606
EMAIPVLEAR	0	1	Unmodified	1127.6009	0.60087982	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											2						18.49	18.49	2	0.00025166	14375	DP690-11	125.82	125.82			0.73528	0.86435	0.69506	2	0	Median	223740000	126490000	97252000	3512	891	3297	6992;6993	17001;17002;17003;17004;17005	17001		5	9606
EMAKDVIEEHGPSEK	2	0	Oxidation (M)	1713.788	0.7879649	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	1	1	10	1									1		1						10.805	10.805	3	2.2163E-05	3404	DP690-11	124.81	100.31			0.88427	1.0473	6.4553	2	0	Median	130110000	66402000	63705000	3513	829	3298	6994;6995	17006;17007	17006	1259	1	9606
EMAKDVIEEHGPSEK	2	0	Unmodified	1697.7931	0.79305028	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	11	0											1						11.902	11.902	3	0.00087976	4873	DP690-11	134.4	103.53			NaN	NaN	NaN	0	0	Median	47000000	0	47000000	3514	829	3298	6996	17008;17009	17009		2	9606
EMAPVPGTTTTTTSVK	1	0	Oxidation (M)	1635.8026	0.80255233	238	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	1	0	11	0											1						12.614	12.614	2	0.00061365	5941	DP690-11	109.15	76.891			0.67145	0.81907	NaN	1	0	Median	28476000	16041000	12434000	3515	238	3299	6997	17010;17011;17012;17013	17013	233	4	9606
EMAPVPGTTTTTTSVK	1	0	Unmodified	1619.8076	0.80763771	238	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	11	0											1						13.803	13.803	2	0.048268	7640	DP690-11	91.093	47.651			NaN	NaN	NaN	0	0	Median	0	0	0	3516	238	3299	6998	17014	17014		1	9606
EMDRETLIDVAR	0	2	Oxidation (M)	1462.7086	0.70859237	702	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	1	1	4	0				1													14.197	14.197	3	0.00069061	7458	DP690-4	96.334	65.462			1.4889	1.56	NaN	1	0	Median	51522000	19548000	31974000	3517	702	3300	6999	17015;17016;17017;17018	17016	1030	4	9606
EMEAELEDER	0	1	Oxidation (M)	1265.5082	0.50816122	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															11.926	11.926	2	0.0024773	4127	DP690-2	105.52	98.3			1.1379	1.1892	NaN	1	0	Median	10809000	4336700	6472400	3518	668	3301	7000	17019;17020;17021	17021	945	3	9606
EMEAELEDERK	1	1	Oxidation (M)	1393.6031	0.60312424	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	2	0		2															10.475	10.475	2;3	0.0087575	2519	DP690-2	120.99	60.552			1.1019	1.0847	NaN	1	0	Median	84475000	48226000	36249000	3519	668	3302	7001;7002	17022;17023;17024	17024	945	3	9606
EMEAELEDERK	1	1	Unmodified	1377.6082	0.60820962	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		2															12.083	12.083	2;3	4.7551E-05	4287	DP690-2	189.18	170.87			1.1674	1.1492	4.8495	2	0	Median	11826000	5687300	6138700	3520	668	3302	7003;7004	17025;17026;17027;17028;17029;17030;17031;17032;17033	17027		9	9606
EMEEELVPTGSEPGDTR	0	1	Oxidation (M)	1890.8153	0.81530186	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	1	0	10	0										3							14.83	14.83	2	3.153E-17	9269	DP690-10	216.84	160.43			NaN	NaN	NaN	0	0	Median	0	0	0	3521	2065	3303	7005;7006;7007	17034;17035;17036	17035	2588	3	9606
EMEENFAVEAANYQDTIGR	0	1	Oxidation (M)	2201.9535	0.95352668	424	P08670	VIM	Vimentin	yes	yes	0	1	0	12	3.34				1								1	2	3			18.634	18.634	2	6.0911E-98	13396	DP690-13	397.92	397.92			0.74918	0.85983	30.5	4	0	Median	1035599999.9999999	559850000	475740000	3522	424	3304	7008;7009;7010;7011;7012;7013;7014	17037;17038;17039;17040;17041;17042;17043;17044;17045;17046;17047;17048;17049;17050;17051;17052;17053;17054;17055	17044	482	19	9606
EMEENFAVEAANYQDTIGR	0	1	Unmodified	2185.9586	0.95861206	424	P08670	VIM	Vimentin	yes	yes	0	0	0	12.5	0.5												1	1				19.295	19.295	2	1.6459000000000003E-211	14928	DP690-12	397.53	301.3			0.80675	0.95516	NaN	1	0	Median	135420000	79237000	56184000	3523	424	3304	7015;7016	17056;17057;17058;17059;17060;17061;17062;17063;17064;17065;17066	17057		11	9606
EMFEDTVEER	0	1	Oxidation (M)	1299.5289	0.52889667	1360	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	1	0	13	0													1				13.798	13.798	2	0.003504	7040	DP690-13	101.46	97.775			0.71278	0.86917	NaN	1	0	Median	41320000	20531000	20789000	3524	1360	3305	7017	17067;17068	17067	2106	2	9606
EMFEDTVEER	0	1	Unmodified	1283.534	0.53398204	1360	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	13	0													1				15.392	15.392	2	0.025722	9378	DP690-13	72.325	50.862			0.74292	0.91599	NaN	1	0	Median	21085000	11212000	9873600	3525	1360	3305	7018	17069	17069		1	9606
EMFGSGTACVVCPVSDILYK	1	0	Oxidation (M)	2248.0214	0.021412008	888	P54687	BCAT1	Branched-chain-amino-acid aminotransferase, cytosolic	yes	yes	0	1	0	6	0						1											20.143	20.143	2	2.5801E-09	14222	DP690-6	148.48	124.39			0.46156	0.51358	NaN	1	0	Median	3150500	1685000	1465500	3526	888	3306	7019	17070;17071	17070	1348	2	9606
EMGQMQVLQMK	1	0	3 Oxidation (M)	1369.604	0.60399264	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	3	0	10	0										2							10.639	10.639	2	0.041924	3249	DP690-10	67.494	17.46			NaN	NaN	NaN	0	0	Median	20663000	0	20663000	3527	1794	3307	7020;7021	17072;17073	17072	2363;2364;2365	2	9606
EMIFEDTNLK	1	0	Oxidation (M)	1254.5802	0.58020395	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	1	0	13	0													2				16.615	16.615	2	0.0019279	9859	DP690-13	107.69	86.722			0.6814	0.78755	26.928	2	0	Median	93686000	51249000	42437000	3528	521	3308	7022;7023	17074;17075	17074	671	2	9606
EMIFEDTNLK	1	0	Unmodified	1238.5853	0.58528933	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	13	0													1				17.416	17.416	2	8.9762E-05	12089	DP690-13	155.58	104.24			0.7664	0.8846	NaN	1	0	Median	78013000	40587000	37426000	3529	521	3308	7024	17076;17077	17077		2	9606
EMKPVIFLDVFLPR	1	1	Oxidation (M)	1718.9429	0.9429494	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	7.8	2.93		1							3	1							22.108	22.108	2;3	7.2659E-06	16980	DP690-9	128.22	113.62			0.67675	0.78491	11.307	5	0	Median	169770000	100740000	69029000	3530	1046	3309	7025;7026;7027;7028;7029	17078;17079;17080;17081;17082;17083;17084;17085;17086;17087;17088;17089;17090;17091;17092;17093;17094	17088	1595	17	9606
EMKPVIFLDVFLPR	1	1	Unmodified	1702.948	0.94803478	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.33	0.471									2	1							22.989	22.989	2;3	1.1738E-05	18240	DP690-9	142.1	142.1			0.6824	0.79145	37.267	3	0	Median	21484000	13034000	8450300	3531	1046	3309	7030;7031;7032	17095;17096;17097;17098;17099;17100;17101	17097		7	9606
EMLFEFIDR	0	1	Oxidation (M)	1214.5642	0.56415996	232	O60942	RNGTT	mRNA-capping enzyme;Polynucleotide 5'-triphosphatase;mRNA guanylyltransferase	yes	yes	0	1	0	12	0												1					20.102	20.102	2	0.0084354	15960	DP690-12	99.442	69.257			0.98222	1.1969	NaN	1	0	Median	8695900	4194200	4501800	3532	232	3310	7033	17102;17103	17102	231	2	9606
EMMLVTSGAVAFGK	1	0	2 Oxidation (M)	1471.7051	0.70508689	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	2	0	11	0											1						16.148	16.148	2	6.4559E-05	11066	DP690-11	143.96	143.96			0.85707	1.0375	NaN	1	0	Median	64186000	33081000	31104000	3533	891	3311	7034	17104;17105;17106	17105	1351;1352	3	9606
EMNLEGTNLDKLPMASTITK	2	0	2 Oxidation (M)	2237.0919	0.091934414	2084	Q9H095	IQCG	IQ domain-containing protein G	yes	yes	0	2	1	3	0			1														18.922	18.922	2	0.022337	13772	DP690-3	111.31	27.144			NaN	NaN	NaN	0	0	Median	0	0	0	3534	2084	3312	7035	17107	17107	2597;2598	1	9606
EMNPALGIDCLHK	1	0	Oxidation (M)	1512.7065	0.70648388	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	0	4	0				1													14.459	14.459	3	0.018022	7832	DP690-4	60.901	38.098			1.3453	1.4509	NaN	1	0	Median	32965000	15847000	17118000	3535	779	3313	7036	17108	17108	1157	1	9606
EMNPALGIDCLHK	1	0	Unmodified	1496.7116	0.71156925	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	4	0				1													15.558	15.558	3	0.044971	9317	DP690-4	49.483	37.1			1.3605	1.4687	NaN	1	0	Median	7705900	4299300	3406600	3536	779	3313	7037	17109;17110	17109		2	9606
EMNPNYTEFK	1	0	Oxidation (M)	1287.5442	0.5441528	811;810	P49841;P49840	GSK3B;GSK3A	Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha	no	no	0	1	0	13	0													1				13.656	13.656	2	0.025113	6934	DP690-13	76.465	52.51			0.77265	0.89691	NaN	1	0	Median	35417000	15172000	20245000	3537	811;810	3314	7038	17111	17111	1219	1	9606
EMNPNYTEFKFPQIK	2	0	Oxidation (M)	1900.9029	0.90293508	811;810	P49841;P49840	GSK3B;GSK3A	Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha	no	no	0	1	1	13	0													1				17.585	17.585	3	0.0011805	12259	DP690-13	84.753	34.094			0.59767	0.67521	NaN	1	0	Median	38342000	25036000	13306000	3538	811;810	3315	7039	17112;17113;17114	17113	1219	3	9606
EMNPNYTEFKFPQIK	2	0	Unmodified	1884.908	0.90802046	811;810	P49841;P49840	GSK3B;GSK3A	Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha	no	no	0	0	1	13	0													1				18.241	18.241	3	0.047578	13224	DP690-13	48.899	48.899			0.90715	1.0366	NaN	1	0	Median	17127000	9403400	7723200	3539	811;810	3315	7040	17115	17115		1	9606
EMPPTNPIR	0	1	Oxidation (M)	1069.5226	0.5226295	641	P31947	SFN	14-3-3 protein sigma	yes	yes	0	1	0	7	0							1										11.678	11.678	2	0.0047235	4340	DP690-7	108.46	33.352			1.1698	1.3002	NaN	1	0	Median	43507000	22190000	21318000	3540	641	3316	7041	17116;17117;17118	17118	894	3	9606
EMQDLSEFCSDKPK	2	0	Unmodified	1712.7386	0.73857187	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	1	12	0												1					14.668	14.668	3	0.0022825	8529	DP690-12	79.639	66.806			0.76826	0.87499	NaN	1	0	Median	80261000	52399000	27862000	3541	1814	3317	7042	17119;17120	17119		2	9606
EMQDLSEFCSDKPK	2	0	Oxidation (M)	1728.7335	0.73348649	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	1	1	12	0												1					13.289	13.289	3	0.00081175	6521	DP690-12	135.04	104.71			NaN	NaN	NaN	0	0	Median	45469000	0	45469000	3542	1814	3317	7043	17121	17121	2394	1	9606
EMQDVQGALQCYTR	0	1	Unmodified	1697.7501	0.7501396	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	11	0											1						17.162	17.162	2	0.00020475	12540	DP690-11	117.09	102.27			0.97819	1.1673	NaN	1	0	Median	44854000	23379000	21474000	3543	149	3318	7044	17122	17122		1	9606
EMQDVQGALQCYTR	0	1	Oxidation (M)	1713.7451	0.74505423	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	1	0	3	0			2														15.791	15.791	2	5.8167E-05	9726	DP690-3	155.48	120.68			NaN	NaN	NaN	0	0	Median	3340600	3340600	0	3544	149	3318	7045;7046	17123;17124;17125;17126	17123	164	4	9606
EMSCIAEDVIIVTSSLTK	1	0	Unmodified	1994.9904	0.99042946	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	11	0											1						25.708	25.708	2	0.00075833	23584	DP690-11	93.494	70.609			1.2666	1.5252	NaN	1	0	Median	4778700	1851200	2927500	3545	2515	3319	7047	17127;17128	17127		2	9606
EMSCIAEDVIIVTSSLTK	1	0	Oxidation (M)	2010.9853	0.98534408	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	1	0	3	0			2														24.127	24.127	2	1.7076E-05	19859	DP690-3	151.3	109.82			NaN	NaN	NaN	0	0	Median	2474700	0	2474700	3546	2515	3319	7048;7049	17129;17130	17130	2951	2	9606
EMSGDLEEGMLAVVK	1	0	2 Oxidation (M)	1638.7481	0.74807392	828	P50995	ANXA11	Annexin A11	yes	yes	0	2	0	4	0				2													15.889	15.889	2	0.014569	9695	DP690-4	89.403	31.836			NaN	NaN	NaN	0	0	Median	7380300	4378100	3002200	3547	828	3320	7050;7051	17131;17132	17132	1255;1256	2	9606
EMVATQQEMMDAQLR	0	1	3 Oxidation (M)	1827.7801	0.7801191	512	P17568	NDUFB7	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	yes	yes	0	3	0	16	0																1	12.551	12.551	2	1.7715E-06	5367	DP690-16	182.92	155.77			0.80354	0.93672	NaN	1	0	Median	8610400	4661800	3948600	3548	512	3321	7052	17133;17134;17135;17136;17137	17136	641;642;643	5	9606
EMVPEFVVPDLTGFK	1	0	Oxidation (M)	1722.8539	0.85385962	1616	Q8IXM3	MRPL41	39S ribosomal protein L41, mitochondrial	yes	yes	0	1	0	16	0																1	22.086	22.086	2	0.00032454	16959	DP690-16	117.86	117.86			0.765	0.89042	NaN	1	0	Median	2201900	1111300	1090600	3549	1616	3322	7053	17138;17139;17140;17141	17138	2267	4	9606
EMVQNLMVLR	0	1	2 Oxidation (M)	1263.6315	0.63152802	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	2	0	4	0				3													15.873	15.873	2	0.0036666	8766	DP690-4	98.523	70.315			0.93924	1.0926	21.788	3	0	Median	221080000	124470000	96606000	3550	469	3323	7054;7055;7056	17142;17143;17144;17145;17146;17147;17148	17146	554;555	7	9606
EMVQNLMVLR	0	1	Oxidation (M)	1247.6366	0.6366134	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	1	0	4	0				1													17.312	17.312	2	0.0012035	11531	DP690-4	112.17	77.785			0.96382	1.0694	NaN	1	0	Median	40307000	20878000	19428000	3551	469	3323	7057	17149	17149	554;555	1	9606
EMVSLGDSNSHSMK	1	0	Oxidation (M)	1536.6548	0.65484224	2	A0A0J9YWL9			yes	yes	0	1	0	7	0							3										27.077	27.077	2	0.0051451	21334	DP690-7	108.43	85.287			NaN	NaN	NaN	0	0	Median	5116900	0	5116900	3552	2	3324	7058;7059;7060	17150;17151;17152	17150	0	3	9606
EMYKTDLEKDIISDTSGDFR	2	1	Unmodified	2362.0999	0.099856564	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	2	14	0														1			18.374	18.374	4	0.013155	13484	DP690-14	60.334	48.972			0.73013	0.8788	NaN	1	0	Median	109320000	59569000	49752000	3553	404	3325	7061	17153	17153		1	9606
EMYLQSLFTPGQFTNEALCK	1	0	Oxidation (M)	2392.1079	0.10791883	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	1	0	10	0										1							21.747	21.747	2	8.7498E-07	19146	DP690-10	142.1	118.62			0.95464	1.1574	NaN	1	0	Median	14350000	7949700	6400200	3554	1156	3326	7062	17154;17155	17154	1806	2	9606
ENAALLTANGLHLSQNR	0	1	Unmodified	1820.9493	0.94930842	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	11	0											2						16.083	16.083	2;3	1.456E-22	11023	DP690-11	251.91	207.3			0.73621	0.88397	17.605	2	0	Median	138380000	80652000	57729000	3555	1653	3327	7063;7064	17156;17157;17158;17159;17160;17161;17162;17163	17160		8	9606
ENAAYFQFFSDVR	0	1	Unmodified	1592.726	0.72595699	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.816									1	1	1						21.027	21.027	2	1.2941E-10	16036	DP690-9	229.82	201.95			0.91746	1.1376	6.4824	3	0	Plateau	141330000	72480000	68853000	3556	1319	3328	7065;7066;7067	17164;17165;17166;17167;17168;17169;17170;17171;17172;17173	17170		10	9606
ENAGEDPGLAR	0	1	Unmodified	1127.5207	0.52071524	1049	P81605	DCD	Dermcidin;Survival-promoting peptide;DCD-1	yes	yes	0	0	0	1	0	1																11.037	11.037	2	0.0044772	2982	DP690-1	123.21	65.649			NaN	NaN	NaN	0	0	Median	10166000	10166000	0	3557	1049	3329	7068	17174	17174		1	9606
ENALVQMADGNQAQLAMSHLNGHK	1	0	2 Oxidation (M)	2608.2122	0.21221776	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	2	0	12	0												4					13.864	13.864	3;4	3.869E-08	7452	DP690-12	148.33	124.86			0.756	0.8565	5.5134	2	0	Median	425590000	222370000	203220000	3558	595	3330	7069;7070;7071;7072	17175;17176;17177;17178;17179;17180;17181;17182;17183;17184;17185;17186	17186	785;786	12	9606
ENALVQMADGNQAQLAMSHLNGHK	1	0	Oxidation (M)	2592.2173	0.21730313	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	1	0	12	0												3					15.724	15.724	3;4	9.5595E-05	9770	DP690-12	111.35	82.933			0.83339	0.92922	NaN	1	0	Median	273220000	193530000	79685000	3559	595	3330	7073;7074;7075	17187;17188;17189;17190;17191;17192	17188	785;786	6	9606
ENALVQMADGNQAQLAMSHLNGHK	1	0	Unmodified	2576.2224	0.22238851	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	12	0												1					17.639	17.639	4	1.4059E-15	12488	DP690-12	162.44	141.7			0.82374	0.91001	NaN	1	0	Median	232730000	121900000	110830000	3560	595	3330	7076	17193;17194;17195;17196;17197;17198;17199	17193		7	9606
ENAPAIIFIDEIDAIATK	1	0	Unmodified	1943.0252	0.025158703	743	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	5	0					1												26.021	26.021	2	0.00024968	21521	DP690-5	110.22	90.374			0.89379	0.89856	NaN	1	0	Median	3087900	1461500	1626400	3561	743	3331	7077	17200;17201	17200		2	9606
ENASPAPGTTAEEAMSR	0	1	Oxidation (M)	1733.7526	0.75264203	754	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	1	0	3	0			1														11.147	11.147	2	0.049787	3607	DP690-3	82.202	39.992			NaN	NaN	NaN	0	0	Median	771590	0	771590	3562	754	3332	7078	17202	17202		1	9606
ENCPVPGKPGEAVAAR	1	1	Unmodified	1650.8148	0.81478877	367	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	0	1	11	4							1								1		11.153	11.153	3	9.5091E-05	3604	DP690-7	115.09	81.775			0.63946	0.70997	19.24	2	0	Median	56691000	32710000	23981000	3563	367	3333	7079;7080	17203;17204;17205;17206;17207;17208;17209;17210;17211	17209		9	9606
ENCYDSVPITR	0	1	Unmodified	1352.6031	0.60306466	1792	Q92828	CORO2A	Coronin-2A	yes	yes	0	0	0	12	0												1					14.291	14.291	2	0.00089974	8028	DP690-12	107.55	82.169			0.68918	0.8196	NaN	1	0	Median	67583000	40951000	26631000	3564	1792	3334	7081	17212;17213;17214	17213		3	9606
ENDEEKVTFNLSK	2	0	Unmodified	1551.7417	0.74166663	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	1	13	0													2				14.461	14.461	2;3	1.5572E-12	7947	DP690-13	287.29	215.09			0.87456	0.97815	1.1805	2	0	Median	171900000	84060000	87842000	3565	229	3335	7082;7083	17215;17216;17217;17218;17219;17220;17221	17216		7	9606
ENDPSSVLLFLVGSK	1	0	Unmodified	1603.8457	0.84573777	2059	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	15	0															2		23.928	23.928	2	0.0199	19084	DP690-15	94.688	35.321			NaN	NaN	NaN	0	0	Median	1229100	1229100	0	3566	2059	3336	7084;7085	17222;17223;17224;17225	17224		4	9606
ENDVKPDHETPATEIVQLK	2	0	Unmodified	2162.0855	0.085527128	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	1	10	0										1							14.321	14.321	3	0.00012836	8516	DP690-10	106.31	85.357			0.63255	0.81318	NaN	1	0	Median	54547000	27815000	26733000	3567	2155	3337	7086	17226;17227	17226		2	9606
ENDYYTPTGEFR	0	1	Unmodified	1490.6314	0.6313879	767	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	10.3	1.25									1	1		1					15.917	15.917	2	8.1145E-05	9729	DP690-9	135.55	120.67			0.65121	0.81609	3.6631	2	0	Median	65556000	40441000	25115000	3568	767	3338	7087;7088;7089	17228;17229;17230;17231;17232;17233;17234	17233		7	9606
ENEDENSSSTNLCVEDLQK	1	0	Unmodified	2209.9281	0.92809979	2206	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	11	0											1						15.558	15.558	2	0.0013153	10205	DP690-11	142.95	87.692			NaN	NaN	NaN	0	0	Median	0	0	0	3569	2206	3339	7090	17235	17235		1	9606
ENEFSFEDNAIR	0	1	Unmodified	1469.6423	0.64228694	1297	Q14839;Q8TDI0	CHD4;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5	yes	no	0	0	0	9.5	0.5									1	1							17.545	17.545	2	3.1592E-10	13221	DP690-10	240.13	182.54			0.8858	1.0934	13.872	2	0	Median	177500000	94590000	82912000	3570	1297	3340	7091;7092	17236;17237;17238;17239;17240	17237		5	9606
ENEVEEVKEEGPK	2	0	Unmodified	1514.71	0.71003215	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	13	0													2				12.101	12.101	2;3	3.5991E-10	4730	DP690-13	217.22	184			0.80542	0.91427	23.761	2	0	Median	67509000	42248000	25262000	3571	1678	3341	7093;7094	17241;17242;17243;17244;17245	17242		5	9606
ENFCNIHVSLVPQPSSTGEQK	1	0	Unmodified	2370.1274	0.12740872	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	4	0				2													16.828	16.828	2;3	1.1804E-36	10947	DP690-4	299.56	233.17			0.77821	0.82046	7.8841	2	0	Median	247820000	138940000	108880000	3572	516	3342	7095;7096	17246;17247;17248;17249;17250;17251;17252;17253;17254;17255	17254		10	9606
ENFIPTIVNFSAEEISDAIR	0	1	Unmodified	2264.1325	0.13247732	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								25.686	25.686	2	9.4769E-10	21293	DP690-9	153.7	123.37			0.83716	1.0047	NaN	1	0	Median	1616700	845080	771620	3573	1264	3343	7097	17256;17257;17258;17259;17260	17259		5	9606
ENGVHSLIIEPVTSR	0	1	Unmodified	1649.8737	0.87368386	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	11	0											1						15.487	15.487	3	0.00012974	10062	DP690-11	109.48	79.541			0.69402	0.80787	NaN	1	0	Median	164480000	97357000	67128000	3574	1758	3344	7098	17261	17261		1	9606
ENGVYLIDVK	1	0	Unmodified	1148.6077	0.60773933	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	0										1							17.195	17.195	2	0.00040159	12686	DP690-10	121.5	54.333			0.8713	0.96053	NaN	1	0	Median	673690000	344150000	329540000	3575	549	3345	7099	17262;17263;17264;17265	17263		4	9606
ENILEEFSK	1	0	Unmodified	1107.5448	0.54480473	176	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	12	0												2					19.182	19.182	2	0.010636	14800	DP690-12	129.42	47.181			NaN	NaN	NaN	0	0	Median	0	0	0	3576	176	3346	7100;7101	17266;17267	17267		2	9606
ENIVEAIIHSPELIR	0	1	Unmodified	1731.9519	0.95193418	320	O95373	IPO7	Importin-7	yes	yes	0	0	0	3	0			2														22.034	22.034	2;3	1.5772E-05	17491	DP690-3	168.76	137.16			0.93251	1.034	28.681	2	0	Median	10763000	5538000	5224700	3577	320	3347	7102;7103	17268;17269;17270;17271;17272;17273	17271		6	9606
ENLEEEAIIMK	1	0	Oxidation (M)	1333.6435	0.64353249	2290	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	yes	yes	0	1	0	16	0																1	15.656	15.656	2	0.075876	9515	DP690-16	78.939	12.343			NaN	NaN	NaN	0	0	Median	5540100	0	5540100	3578	2290	3348	7104	17274	17274		1	9606
ENLEQAFEVAER	0	1	Unmodified	1433.6787	0.67867245	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								18.73	18.73	2	0.00027561	13266	DP690-9	119.34	86.921			0.7533	0.94446	NaN	1	0	Median	6998400	4064300	2934100	3579	2411	3349	7105	17275	17275		1	9606
ENLFMDLLR	0	1	Oxidation (M)	1165.5801	0.58014438	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	1	0	10	0										1							21.837	21.837	2	0.0046075	19317	DP690-10	108.74	84.588			0.84541	1.0588	NaN	1	0	Median	40846000	22089000	18757000	3580	1783	3350	7106	17276;17277;17278;17279	17279	2349	4	9606
ENLFMDLLR	0	1	Unmodified	1149.5852	0.58522975	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										1							23.028	23.028	2	0.028538	20894	DP690-10	74.165	45.988			1.1692	1.4678	NaN	1	0	Median	11920000	4344000	7575800	3581	1783	3350	7107	17280;17281	17280		2	9606
ENLISALEEAK	1	0	Unmodified	1215.6347	0.63468237	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														19.705	19.705	2	7.5396E-05	14683	DP690-3	135.55	97.273			0.80179	0.85052	NaN	1	0	Median	32132000	18286000	13846000	3582	559	3351	7108	17282;17283;17284;17285;17286;17287	17283		6	9606
ENLISALEEAKK	2	0	Unmodified	1343.7296	0.72964538	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	3	0			1														17.26	17.26	2	0.00049929	11654	DP690-3	160.53	126.61			0.85793	0.91522	NaN	1	0	Median	82410000	45232000	37178000	3583	559	3352	7109	17288;17289;17290;17291	17290		4	9606
ENLQLNQETEAIKEELLYFK	2	0	Unmodified	2451.2533	0.25332074	1829	Q96BW5	PTER	Phosphotriesterase-related protein	yes	yes	0	0	1	6	0						1											21.745	21.745	3	1.3656E-10	15992	DP690-6	158.92	138.75			0.89552	0.92577	NaN	1	0	Median	5874700	3220300	2654400	3584	1829	3353	7110	17292;17293	17292		2	9606
ENLSYDLVPLK	1	0	Unmodified	1289.6867	0.68671794	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														18.723	18.723	2	0.007235	13529	DP690-3	83.862	46.354			0.96886	1.0307	NaN	1	0	Median	11978000	5222100	6755700	3585	1778	3354	7111	17294;17295;17296	17294		3	9606
ENMAYTVECLR	0	1	Oxidation (M)	1400.6064	0.60643548	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	13	0													2				14.929	14.929	2	0.00015346	8784	DP690-13	146.11	88.147			0.82557	0.95736	8.8672	2	0	Median	512960000	278210000	234750000	3586	565	3355	7112;7113	17297;17298;17299;17300;17301;17302;17303;17304	17302	739	8	9606
ENMAYTVECLR	0	1	Unmodified	1384.6115	0.61152086	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13	0													1				16.629	16.629	2	2.4176E-06	10956	DP690-13	214.05	153.57			0.85972	0.96582	NaN	1	0	Median	317110000	176850000	140260000	3587	565	3355	7114	17305;17306;17307;17308	17307		4	9606
ENPGSGEYDFR	0	1	Unmodified	1269.5262	0.52619455	2023	Q9BVV7	TIMM21	Mitochondrial import inner membrane translocase subunit Tim21	yes	yes	0	0	0	16	0																1	14.014	14.014	2	0.00045855	7225	DP690-16	114.86	85.709			0.7477	0.83157	NaN	1	0	Median	75520000	41553000	33967000	3588	2023	3356	7115	17309;17310	17310		2	9606
ENQGSHESPTLNPETVAINLSDVDLSK	1	0	Unmodified	2893.3941	0.39412433	583	P25445	FAS	Tumor necrosis factor receptor superfamily member 6	yes	yes	0	0	0	13	0													1				20.086	20.086	3	5.7253E-05	15594	DP690-13	94.49	72.033			0.42784	0.49222	NaN	1	0	Median	13484000	8850100	4633500	3589	583	3357	7116	17311	17311		1	9606
ENQWFDVGVIK	1	0	Unmodified	1333.6667	0.6666512	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	11	0											1						19.813	19.813	2	0.00015441	16444	DP690-11	142	83.399			0.80371	0.97392	NaN	1	0	Median	69146000	35068000	34078000	3590	837	3358	7117	17312;17313;17314	17314		3	9606
ENTELAQPLRK	1	1	Unmodified	1297.699	0.69901396	895	P55196	MLLT4	Afadin	yes	yes	0	0	1	10	0										1							11.258	11.258	2	0.0011117	4113	DP690-10	113.18	79.985			0.95417	1.1616	NaN	1	0	Median	24386000	12703000	11682000	3591	895	3359	7118	17315;17316;17317;17318;17319	17317		5	9606
ENVAFEQEKEGK	2	0	Unmodified	1406.6678	0.66777341	1058	P83111	LACTB	Serine beta-lactamase-like protein LACTB, mitochondrial	yes	yes	0	0	1	12	0												1					10.721	10.721	2	0.0073613	3137	DP690-12	138.25	84.92			NaN	NaN	NaN	0	0	Median	0	0	0	3592	1058	3360	7119	17320	17320		1	9606
ENVFQEHQTLK	1	0	Unmodified	1371.6783	0.67827852	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	11	0											3						12.893	12.893	2	4.774E-05	6311	DP690-11	185.33	96.958			NaN	NaN	NaN	0	0	Median	0	0	0	3593	1267	3361	7120;7121;7122	17321;17322;17323	17323		3	9606
ENVIMSQILPCIK	1	0	Oxidation (M)	1559.8051	0.80513529	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	1	0	8	4				1								1					18.622	18.622	2	1.1145E-11	13029	DP690-4	189.17	144.53			NaN	NaN	NaN	0	0	Median	23048000	0	23048000	3594	624	3362	7123;7124	17324;17325;17326	17326	857	3	9606
ENVNLAQIR	0	1	Unmodified	1055.5724	0.57235688	775	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	4	0				1													14.456	14.456	2	0.0049443	7862	DP690-4	100.02	59.239			5.6625	6.4675	NaN	1	0	Median	22397000	3842100	18555000	3595	775	3363	7125	17327;17328	17328		2	9606
ENVNSLLPVFEEFLK	1	0	Unmodified	1776.9298	0.92980175	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	9.67	0.471									1	2							25.353	25.353	2	2.1386E-05	23300	DP690-10	155.88	155.88			0.82079	1.0087	12.243	3	0	Plateau	38630000	20468000	18161000	3596	1782	3364	7126;7127;7128	17329;17330;17331;17332;17333;17334;17335;17336;17337	17331		9	9606
ENVPPGPEVCITHQEGEK	1	0	Unmodified	2018.9368	0.9367544	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	11	0											2						13.511	13.511	2;3	1.9149E-10	7204	DP690-11	157.74	107.58			0.75113	0.87606	NaN	1	0	Median	138530000	74645000	63888000	3597	2340	3365	7129;7130	17338;17339;17340;17341;17342;17343	17338		6	9606
ENVQVAQSNLTK	1	0	Unmodified	1329.6888	0.6888432	2198	Q9NR82	KCNQ5	Potassium voltage-gated channel subfamily KQT member 5	yes	yes	0	0	0	9	0									1								12.348	12.348	2	0.00018784	4993	DP690-9	139.31	75.88			0.9584	1.2134	NaN	1	0	Median	7124700	3823200	3301500	3598	2198	3366	7131	17344;17345	17344		2	9606
ENVSDLTLGPGNSPITR	0	1	Unmodified	1768.8955	0.89554151	1467	Q6DCA0	AMMECR1L	AMMECR1-like protein	yes	yes	0	0	0	14	0														1			17.433	17.433	2	0.0041272	12238	DP690-14	160.56	119.08			NaN	NaN	NaN	0	0	Median	0	0	0	3599	1467	3367	7132	17346	17346		1	9606
ENVSNCIQLK	1	0	Unmodified	1203.5918	0.59177169	2386	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	0	0	0	16	0																1	13.894	13.894	2	0.0067739	7084	DP690-16	88.177	51.73			1.33	1.5555	NaN	1	0	Median	20678000	9114100	11564000	3600	2386	3368	7133	17347;17348	17347		2	9606
EPAAEIEALLGMDLVR	0	1	Oxidation (M)	1741.892	0.89203604	1154	Q12765	SCRN1	Secernin-1	yes	yes	0	1	0	5	0					1												22.935	22.935	2	0.0012702	18029	DP690-5	99.732	99.732			0.98327	1.0317	NaN	1	0	Median	16352000	7729900	8622100	3601	1154	3369	7134	17349	17349	1804	1	9606
EPAEPVAAEPK	1	0	Unmodified	1136.5714	0.57135383	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	0	10	4						1								1			10.997	10.997	2	0.0016778	3382	DP690-14	136.52	72.308			0.60265	0.68135	NaN	1	0	Median	42575000	40505000	2070100	3602	820	3370	7135;7136	17350;17351;17352;17353	17350		4	9606
EPAPDSGLLGLFQGQNSLLH	0	0	Unmodified	2092.0589	0.058918448	1817	Q96AB3	ISOC2	Isochorismatase domain-containing protein 2, mitochondrial	yes	yes	0	0	0	7.67	0.471							1	2									23.496	23.496	2	1.6093E-20	18685	DP690-7	201.76	170.09			NaN	NaN	NaN	0	0	Median	0	0	0	3603	1817	3371	7137;7138;7139	17354;17355;17356;17357	17354		4	9606
EPAPETADGPYLVIVEQPK	1	0	Unmodified	2052.0415	0.041537049	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	3	0			1														18.987	18.987	2	1.6989E-07	13854	DP690-3	175.6	118.38			NaN	NaN	NaN	0	0	Median	0	0	0	3604	1076	3372	7140	17358	17358		1	9606
EPAQTEAAASTEPATR	0	1	Unmodified	1628.7642	0.76419299	1667	Q8N8A6	DDX51	ATP-dependent RNA helicase DDX51	yes	yes	0	0	0	11	0											3						10.899	10.899	2	4.9733E-18	3423	DP690-11	204.32	135.05			NaN	NaN	NaN	0	0	Median	9709200	9709200	0	3605	1667	3373	7141;7142;7143	17359;17360;17361;17362	17359		4	9606
EPELGLEELLR	0	1	Unmodified	1296.6925	0.6925316	2274	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	6	0						1											21.238	21.238	2	0.0016044	15371	DP690-6	101.46	47.303			0.77082	0.86518	NaN	1	0	Median	2953400	1637900	1315500	3606	2274	3374	7144	17363;17364	17363		2	9606
EPEVLSTMAIIVNK	1	0	Oxidation (M)	1558.8276	0.82764487	128	O14980	XPO1	Exportin-1	yes	yes	0	1	0	3	0			1														17.184	17.184	2	0.00054003	11522	DP690-3	110.54	85.703			1.0307	1.1064	NaN	1	0	Median	16154000	8590300	7564100	3607	128	3375	7145	17365	17365	141	1	9606
EPFTIAQGK	1	0	Unmodified	989.5182	0.51819605	674	P35659	DEK	Protein DEK	yes	yes	0	0	0	13.5	0.5													1	1			13.992	13.992	2	0.012997	7331	DP690-13	107.29	63.526			0.69248	0.84106	NaN	1	0	Median	226040000	200990000	25054000	3608	674	3376	7146;7147	17366;17367;17368	17367		3	9606
EPGQDLVVLPLTITSDFIPSFR	0	1	Unmodified	2443.2999	0.299877	48	CON__Q2UVX4			yes	yes	0	0	0	1	0	1																26.579	26.579	2	1.8704E-12	17871	DP690-1	175.45	20.171		+	NaN	NaN	NaN	0	0	Median	192790	192790	0	3609	48	3377	7148	17369	17369		1	
EPHFQSLLEAHDIVASK	1	0	Unmodified	1919.9741	0.97412619	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	12	0												2					16.712	16.712	3	1.2147E-09	11436	DP690-12	184.01	184.01			0.88007	0.99716	NaN	1	0	Median	157500000	67952000	89551000	3610	2280	3378	7149;7150	17370;17371;17372	17371		3	9606
EPHGWVVDLVNK	1	0	Unmodified	1391.7197	0.7197494	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		2															17.033	17.033	3	0.011816	10147	DP690-2	69.451	32.123			NaN	NaN	NaN	0	0	Median	0	0	0	3611	2418	3379	7151;7152	17373;17374	17373		2	9606
EPIMPAPGQEETVR	0	1	Oxidation (M)	1568.7505	0.75045718	1806	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	1	0	4	0				1													12.859	12.859	2	9.8156E-05	5743	DP690-4	139.32	97.783			0.66055	0.76888	NaN	1	0	Median	9607400	5809800	3797500	3612	1806	3380	7153	17375;17376	17375	2382	2	9606
EPLPPIQQHIWNMLNPPAEVTTK	1	0	Unmodified	2652.3734	0.37339307	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	11	0											1						21.15	21.15	3	0.072648	18304	DP690-11	49.662	12.982			NaN	NaN	NaN	0	0	Median	28522000	0	28522000	3613	480	3381	7154	17377	17377		1	9606
EPLRMDLADLLTQNPELFR	0	2	Oxidation (M)	2286.1678	0.16781697	120	O14933	UBE2L6	Ubiquitin/ISG15-conjugating enzyme E2 L6	yes	yes	0	1	1	8	0								1									21.909	21.909	3	5.8507E-05	15657	DP690-8	114.21	86.982			0.58903	0.62234	NaN	1	0	Median	3228700	2143600	1085200	3614	120	3382	7155	17378;17379	17379	131	2	9606
EPLSLINVR	0	1	Unmodified	1039.6026	0.60259438	1873	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	15	0															1		17.424	17.424	2	0.00075303	11979	DP690-15	136.11	70.861			0.91305	1.0621	NaN	1	0	Median	26288000	14257000	12031000	3615	1873	3383	7156	17380;17381	17380		2	9606
EPLSSETQYSVDTR	0	1	Unmodified	1610.7424	0.74239491	1957	Q99755;A2A3N6	PIP5K1A;PIPSL	Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Putative PIP5K1A and PSMD4-like protein	yes	no	0	0	0	8	4				1								1					14.383	14.383	2	7.567E-05	7723	DP690-4	147.62	117.82			0.65654	0.76074	NaN	1	0	Median	18830000	3156000	15674000	3616	1957	3384	7157;7158	17382;17383;17384;17385	17385		4	9606
EPLVATNLPGR	0	1	Unmodified	1165.6455	0.64552182	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	11	0											1						15.273	15.273	2	0.0028132	9778	DP690-11	128.28	59.898			NaN	NaN	NaN	0	0	Median	0	0	0	3617	723	3385	7159	17386	17386		1	9606
EPLWIRPDAPSR	0	2	Unmodified	1435.7572	0.75719754	666	P35520	CBS	Cystathionine beta-synthase	yes	yes	0	0	1	4	0				1													15.189	15.189	3	0.056372	8884	DP690-4	48.948	31.832			0.58759	0.61567	NaN	1	0	Median	25568000	15753000	9814700	3618	666	3386	7160	17387	17387		1	9606
EPMIGVNQELAYFYPELFR	0	1	Oxidation (M)	2331.1246	0.12455517	32	CON__P02662			yes	yes	0	1	0	3.31	2.31	5	3	2	1	1	2	1	1									23.919	23.919	2;3	2.3087E-79	18989	DP690-5	282.12	215.73		+	NaN	NaN	NaN	0	0	Median	153420000	153420000	0	3619	32	3387	7161;7162;7163;7164;7165;7166;7167;7168;7169;7170;7171;7172;7173;7174;7175;7176	17388;17389;17390;17391;17392;17393;17394;17395;17396;17397;17398;17399;17400;17401;17402;17403;17404;17405;17406;17407;17408;17409;17410;17411;17412;17413;17414;17415	17409	33	28	
EPMIGVNQELAYFYPELFR	0	1	Unmodified	2315.1296	0.12964055	32	CON__P02662			yes	yes	0	0	0	5	0					1												24.488	24.488	2	1.4889E-39	19783	DP690-5	264.29	206.19		+	NaN	NaN	NaN	0	0	Median	0	0	0	3620	32	3387	7177	17416	17416		1	
EPNPPIDEVISTPGVVAR	0	1	Unmodified	1888.9894	0.9894419	851	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	0	8	4				1								1					18.655	18.655	2	7.7515E-10	13088	DP690-4	156	135.54			0.63542	0.74778	4.1362	2	0	Median	34013000	20871000	13142000	3621	851	3388	7178;7179	17417;17418;17419;17420;17421;17422;17423	17421		7	9606
EPNSSAQIDIVISNK	1	0	Unmodified	1613.8261	0.82606496	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														16.426	16.426	2	1.7831E-05	10534	DP690-3	136.53	80.487			0.80489	0.8642	NaN	1	0	Median	16288000	9281600	7006000	3622	559	3389	7180	17424;17425;17426	17426		3	9606
EPPADVWTPPAR	0	1	Unmodified	1334.6619	0.66190017	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	11.5	0.5											1	1					15.825	15.825	2	0.00013824	10101	DP690-12	123.86	103.56			1.0258	1.2256	49.337	2	0	Median	129470000	71032000	58436000	3623	1269	3390	7181;7182	17427;17428;17429;17430;17431;17432;17433	17433		7	9606
EPPTDVTPTFLTTGVLSTLR	0	1	Unmodified	2144.1365	0.13650007	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	7.25	3.77			1	1							2						22.795	22.795	2	9.2484E-13	17781	DP690-4	177.84	177.84			0.63549	0.72403	11.923	2	0	Median	11355000	6519600	4835600	3624	813	3391	7183;7184;7185;7186	17434;17435;17436;17437;17438;17439;17440;17441;17442;17443;17444;17445;17446;17447;17448	17447		15	9606
EPQVYVLAPPQEELSK	1	0	Unmodified	1825.9462	0.9461801	23	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	3	0.816		1	1	1													18.131	18.131	2	0.0016352	11391	DP690-2	165.51	119.44		+	NaN	NaN	NaN	0	0	Median	46796000	46796000	0	3625	23	3392	7187;7188;7189	17449;17450;17451;17452;17453;17454	17450		6	
EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR	0	1	Unmodified	2935.4464	0.44643467	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			1														15.448	15.448	3	9.3471E-09	9172	DP690-3	136.88	124.54			0.34769	0.39206	NaN	1	0	Median	31014000	23054000	7960100	3626	1739	3393	7190	17455;17456;17457;17458;17459;17460;17461	17456		7	9606
EPTSSEQGGLEGSGSAAGEGKPALSEEER	1	1	Unmodified	2845.285	0.28496781	1109	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	0	0	1	6	0						1											13.174	13.174	3	3.1172E-12	5917	DP690-6	151.6	144.41			0.66852	0.74921	NaN	1	0	Median	10881000	6773600	4107900	3627	1109	3394	7191	17462;17463;17464;17465;17466;17467;17468	17465		7	9606
EPVICTPVSSGFEK	1	0	Unmodified	1548.7494	0.74939455	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0										1							16.618	16.618	2	0.0057729	11949	DP690-10	111.94	63.513			NaN	NaN	NaN	0	0	Median	75819000	75819000	0	3628	1724	3395	7192	17469	17469		1	9606
EPVQLETLSIR	0	1	Unmodified	1283.7085	0.70851601	979	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	0	0	16	0																1	17.654	17.654	2	0.00010139	11982	DP690-16	126.31	79.231			0.76753	0.89267	NaN	1	0	Median	12651000	6309500	6341500	3629	979	3396	7193	17470;17471	17470		2	9606
EPYNYFLLLR	0	1	Unmodified	1326.6972	0.69722304	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	9.5	0.5									1	1							21.618	21.618	2	0.0040049	18954	DP690-10	89.752	40.997			0.76783	0.95769	23.278	2	0	Median	31979000	18337000	13642000	3630	2483	3397	7194;7195	17472;17473;17474	17472		3	9606
EQADFALEALAK	1	0	Unmodified	1304.6612	0.66123147	1543	Q7Z406	MYH14	Myosin-14	yes	yes	0	0	0	2	0		1															18.584	18.584	2	0.00058031	11882	DP690-2	109.83	0			1.135	1.1504	NaN	1	0	Median	32608000	15567000	17040000	3631	1543	3398	7196	17475;17476;17477;17478	17477		4	9606
EQALSTLQLEHTSTQALVSELLPAK	1	0	Unmodified	2706.444	0.44397506	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							21.416	21.416	3	9.519E-06	18686	DP690-10	125.77	125.77			0.85798	1.0578	NaN	1	0	Median	53998000	29046000	24951000	3632	1301	3399	7197	17479;17480	17479		2	9606
EQCCYNCGKPGHLAR	1	1	Unmodified	1848.7818	0.78179086	985	P62633	CNBP	Cellular nucleic acid-binding protein	yes	yes	0	0	1	15	0															1		10.245	10.245	4	0.00020253	2576	DP690-15	104.17	89.908			1.0238	1.1696	NaN	1	0	Median	40022000	20294000	19728000	3633	985	3400	7198	17481;17482	17481		2	9606
EQCLLPPEDSR	0	1	Unmodified	1342.6187	0.61871473	1578	Q86VU5	COMTD1	Catechol O-methyltransferase domain-containing protein 1	yes	yes	0	0	0	15	0															1		14.313	14.313	2	0.0054651	7692	DP690-15	87.298	59.969			0.682	0.79271	NaN	1	0	Median	26849000	15089000	11760000	3634	1578	3401	7199	17483;17484	17483		2	9606
EQEELEEALEVER	0	1	Unmodified	1601.7421	0.74206056	847	P51948	MNAT1	CDK-activating kinase assembly factor MAT1	yes	yes	0	0	0	14	0														2			17.884	17.884	2	0.0009436	12771	DP690-14	138.99	67.378			NaN	NaN	NaN	0	0	Median	15482000	0	15482000	3635	847	3402	7200;7201	17485;17486	17485		2	9606
EQELLEQYVSTVNDR	0	1	Unmodified	1821.8745	0.87447172	1621	Q8IY33	MICALL2	MICAL-like protein 2	yes	yes	0	0	0	11	0											1						19.207	19.207	2	0.0014248	15471	DP690-11	149.41	79.69			NaN	NaN	NaN	0	0	Median	0	0	0	3636	1621	3403	7202	17487	17487		1	9606
EQELQQTLQQEQSVLDQLR	0	1	Unmodified	2312.1608	0.16081734	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.25	0.433									3	1							21.272	21.272	2	0	16318	DP690-9	477.64	362.87			NaN	NaN	NaN	0	0	Median	52777000	39990000	12788000	3637	1319	3404	7203;7204;7205;7206	17488;17489;17490;17491;17492;17493	17491		6	9606
EQELQQTLQQEQSVLDQLRGEAEAAR	0	2	Unmodified	2996.4799	0.47991964	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							21.328	21.328	3	2.819E-16	16374	DP690-9	172.57	160.83			0.79509	0.90342	10.176	2	0	Median	71223000	36862000	34361000	3638	1319	3405	7207;7208	17494;17495;17496;17497;17498;17499;17500;17501	17498		8	9606
EQEMQECTTQIQYLK	1	0	Oxidation (M)	1943.8605	0.86047792	1308	Q15007	WTAP	Pre-mRNA-splicing regulator WTAP	yes	yes	0	1	0	13	0													1				14.983	14.983	2	0.0082042	8725	DP690-13	121.02	32.965			NaN	NaN	NaN	0	0	Median	0	0	0	3639	1308	3406	7209	17502	17502	1996	1	9606
EQEPMPTVDSHEPR	0	1	Oxidation (M)	1666.7257	0.72569899	2139	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	1	0	11.5	3.5								1							1		10.601	10.601	3	0.00048992	3113	DP690-15	98.337	73.985			0.631	0.73963	30.057	2	0	Median	45655000	25181000	20474000	3640	2139	3407	7210;7211	17503;17504;17505;17506	17503	2631	4	9606
EQEPMPTVDSHEPR	0	1	Unmodified	1650.7308	0.73078437	2139	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	7	0							1										12.361	12.361	3	0.02385	4994	DP690-7	58.21	46.309			0.65623	0.749	NaN	1	0	Median	21205000	11691000	9513400	3641	2139	3407	7212	17507;17508;17509	17507		3	9606
EQEVNILKK	2	0	Unmodified	1099.6237	0.62372375	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		1															11.491	11.491	2	0.0018129	3618	DP690-2	130.27	93.876			1.25	1.2976	NaN	1	0	Median	7763400	3281600	4481800	3642	668	3408	7213	17510;17511;17512;17513	17513		4	9606
EQEVPTFTELSR	0	1	Unmodified	1434.6991	0.69907354	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	13	0													1				17.445	17.445	2	6.6979E-05	12088	DP690-13	133.23	67.922			0.77043	0.89885	NaN	1	0	Median	154370000	68560000	85806000	3643	229	3409	7214	17514;17515	17514		2	9606
EQFWEQAK	1	0	Unmodified	1064.4927	0.49270958	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	0	11	0											1						14.977	14.977	2	0.055634	9349	DP690-11	140.98	71.601			0.796	0.81792	NaN	1	0	Median	716510000	406600000	309910000	3644	1365	3410	7215	17516	17516		0	9606
EQGPYETYEGSPVSK	1	0	Unmodified	1669.7471	0.74714594	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	7	4			1								1						14.173	14.173	2	2.3523E-14	7504	DP690-3	216.83	158.24			0.67443	0.76443	3.4665	2	0	Median	94568000	54893000	39675000	3645	574	3411	7216;7217	17517;17518;17519;17520;17521;17522	17521		6	9606
EQGQAPITPQQGQALAK	1	0	Unmodified	1763.9166	0.91661131	1062	P84095	RHOG	Rho-related GTP-binding protein RhoG	yes	yes	0	0	0	16	0																1	13.477	13.477	2	2.5027E-09	6592	DP690-16	187.62	160.87			0.80653	0.94368	NaN	1	0	Median	6506400	3476000	3030400	3646	1062	3412	7218	17523;17524;17525	17525		3	9606
EQGTGNSYTDTSGPK	1	0	Unmodified	1540.6641	0.66414459	2341	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	0	0	0	10	0										1							10.735	10.735	2	0.0019119	3298	DP690-10	145.31	112.58			NaN	NaN	NaN	0	0	Median	0	0	0	3647	2341	3413	7219	17526	17526		1	9606
EQGVLSFWR	0	1	Unmodified	1120.5665	0.56654322	381;473	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	10.2	2.32							1		1	1	1			1			19.708	19.708	2	5.3051E-05	16208	DP690-11	136.27	98.135			0.85067	0.95383	3.362	5	0	Median	1529199999.9999998	797870000	731310000	3648	381;473	3414	7220;7221;7222;7223;7224	17527;17528;17529;17530;17531;17532;17533;17534;17535;17536;17537;17538;17539;17540;17541;17542;17543;17544;17545	17533		19	9606
EQGVTFPSGDIQEQLIR	0	1	Unmodified	1915.964	0.96395543	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														19.259	19.259	2	1.7088E-09	12656	DP690-2	190.34	159.61			0.90461	0.98265	17.166	2	0	Median	28084000	14670000	13414000	3649	789	3415	7225;7226	17546;17547;17548;17549;17550;17551;17552;17553	17546		8	9606
EQHQHSDLDSNQTHSSGTVTSSSSTANIDDLKK	2	0	Unmodified	3553.6153	0.61530351	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	1	10	0.816									1	1	1						11.588	11.588	5	3.4088E-09	4576	DP690-10	118.15	107.98			0.81959	0.93291	23.639	3	0	Plateau	334520000	189430000	145090000	3650	1240	3416	7227;7228;7229	17554;17555;17556;17557;17558;17559;17560;17561;17562	17557		9	9606
EQISDIDDAVR	0	1	Unmodified	1259.5994	0.59935949	884	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	12	4								1								1	15.259	15.259	2	0.0062329	8860	DP690-16	85.807	56.89			0.83371	0.98903	26.399	2	0	Median	30563000	15052000	15511000	3651	884	3417	7230;7231	17563;17564;17565;17566;17567;17568	17563		6	9606
EQISENPTEATDIGFGNR	0	1	Unmodified	1976.9076	0.90756276	1116	Q05209	PTPN12	Tyrosine-protein phosphatase non-receptor type 12	yes	yes	0	0	0	3	0			1														16.907	16.907	2	0.0066048	11182	DP690-3	128.54	84.743			NaN	NaN	NaN	0	0	Median	0	0	0	3652	1116	3418	7232	17569	17569		1	9606
EQITISQLSLVDLAGSER	0	1	Unmodified	1958.032	0.032034995	1092	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	11	0											1						21.437	21.437	2	0.00061504	18533	DP690-11	128.35	128.35			0.77687	0.95448	NaN	1	0	Median	14509000	7261900	7247200	3653	1092	3419	7233	17570;17571	17570		2	9606
EQIVPKPEEEVAQK	2	0	Unmodified	1622.8516	0.85155143	529	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	15	0															2		12.664	12.664	2;3	2.8099E-07	5613	DP690-15	208.33	158.13			0.71882	0.82348	1.8201	2	0	Median	414510000	236680000	177830000	3654	529	3420	7234;7235	17572;17573;17574;17575;17576;17577;17578;17579;17580;17581;17582;17583;17584;17585	17582		14	9606
EQIVPKPEEEVAQKK	3	0	Unmodified	1750.9465	0.94651445	529	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	2	15	0															2		11.376	11.376	3;4	9.1702E-06	3916	DP690-15	167.22	135.16			0.6773	0.73781	16.583	2	0	Median	109280000	61308000	47973000	3655	529	3421	7236;7237	17586;17587;17588;17589;17590;17591;17592	17590		7	9606
EQIYDVYR	0	1	Unmodified	1084.5189	0.51892433	696	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	13	0													1				15.287	15.287	2	0.040248	9170	DP690-13	125.81	36.672			0.81311	0.96411	NaN	1	0	Median	113420000	58612000	54807000	3656	696	3422	7238	17593	17593		0	9606
EQLAIAEFAR	0	1	Unmodified	1146.6033	0.60332266	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	4	0				1													17.795	17.795	2	4.1133E-05	12109	DP690-4	185.81	123.81			1.8493	2.0377	NaN	1	0	Median	46404000	16301000	30103000	3657	520	3423	7239	17594;17595;17596	17595		3	9606
EQLEEEEEAK	1	0	Unmodified	1232.5408	0.54084156	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1															11.063	11.063	2	7.3246E-05	3216	DP690-2	164.96	108.52			1.0762	1.0798	NaN	1	0	Median	5422400	2553900	2868600	3658	668	3424	7240	17597;17598	17597		2	9606
EQLEEEEEAKHNLEK	2	0	Unmodified	1853.8643	0.86430096	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	3.5	2.93		4	1							1							12.025	12.025	2;3;4	5.5097E-08	4172	DP690-2	194.59	163.55			1.0063	1.1255	21.516	4	0	Median	250480000	118170000	132310000	3659	668	3425	7241;7242;7243;7244;7245;7246	17599;17600;17601;17602;17603;17604;17605;17606;17607;17608;17609;17610;17611;17612	17603		14	9606
EQLIQEGLLDR	0	1	Unmodified	1312.6987	0.69867961	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	3.83	1.34		1	2	1	1	1											17.739	17.739	2	2.9304E-24	12208	DP690-3	223.87	103.6			0.75347	0.81687	3.6283	2	0	Median	411430000	393160000	18276000	3660	2316	3426	7247;7248;7249;7250;7251;7252	17613;17614;17615;17616;17617;17618;17619;17620;17621;17622	17616		10	9606
EQLLGQEDYEVALSVGHLASLYNYDMNQYENAEK	1	0	Unmodified	3932.8051	0.80507811	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	2	0		1															17.793	17.793	5	0.084151	11430	DP690-2	8.6902	0.62572			0.40256	0.40437	NaN	1	0	Median	6688400	2926100	3762300	3661	1784	3427	7253	17623	17623		1	9606
EQLLMNALLYLR	0	1	Oxidation (M)	1491.8119	0.81193523	2217	Q9NU22	MDN1	Midasin	yes	yes	0	1	0	9	0									1								21.749	21.749	2	0.00017478	16950	DP690-9	141.48	141.48			0.76505	0.95412	NaN	1	0	Median	3503000	1846100	1656900	3662	2217	3428	7254	17624;17625;17626	17626	2693	3	9606
EQLLMNALLYLR	0	1	Unmodified	1475.817	0.8170206	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								23.357	23.357	2	0.047337	18779	DP690-9	107.57	52.511			NaN	NaN	NaN	0	0	Median	550130	550130	0	3663	2217	3428	7255	17627	17627		1	9606
EQLLQSNPVLEAFGNAK	1	0	Unmodified	1856.9632	0.96322715	189	O43795;Q9UBC5	MYO1B;MYO1A	Unconventional myosin-Ib;Unconventional myosin-Ia	yes	no	0	0	0	10	1									1		1						21.137	21.137	2	9.0899E-07	18099	DP690-11	166.45	117.17			0.69234	0.85571	NaN	1	0	Median	15017000	8631100	6385900	3664	189	3429	7256;7257	17628;17629;17630	17628		3	9606
EQLQLLEEQHR	0	1	Unmodified	1421.7263	0.72629134	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								14.183	14.183	2	0.00018419	7449	DP690-9	170.5	139.01			0.7631	0.95689	NaN	1	0	Median	6878600	3711700	3166900	3665	1319	3430	7258	17631;17632;17633	17632		3	9606
EQLRQEQALLEEIER	0	2	Unmodified	1882.9749	0.97485447	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.67	0.471									1	2							18.339	18.339	2;3	5.7013E-06	12828	DP690-9	131.61	108.75			0.94101	1.02	21.01	3	0	Median	322040000	191800000	130240000	3666	1319	3431	7259;7260;7261	17634;17635;17636;17637;17638	17637		5	9606
EQLSEALQTIQLFLAK	1	0	Unmodified	1831.0091	0.0091147084	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9.67	0.471									1	2							25.534	25.534	2	4.8767E-06	23744	DP690-10	158.2	142.11			0.72922	0.87862	10.494	3	0	Plateau	10288000	5435300	4853000	3667	1102	3432	7262;7263;7264	17639;17640;17641;17642;17643;17644;17645;17646;17647	17642		9	9606
EQLTPSQIMSLEK	1	0	Oxidation (M)	1518.76	0.75995923	1069	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	1	0	15	0															1		15.946	15.946	2	0.0051321	9940	DP690-15	89.548	40.047			0.85102	1.0047	NaN	1	0	Median	27259000	14255000	13004000	3668	1069	3433	7265	17648;17649;17650;17651	17649	1664	4	9606
EQLWLANEGLITR	0	1	Unmodified	1541.8202	0.82019173	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	2	0		1															19.841	19.841	2	0.0092912	13360	DP690-2	105.13	50.526			NaN	NaN	NaN	0	0	Median	1247000	0	1247000	3669	766	3434	7266	17652;17653;17654	17652		3	9606
EQMSALGESGWQEDINR	0	1	Oxidation (M)	1964.8534	0.8534187	2217	Q9NU22	MDN1	Midasin	yes	yes	0	1	0	9	0									2								16.547	16.547	2	0.00019455	10551	DP690-9	120.59	102.99			0.71236	0.89183	NaN	1	0	Median	4936300	2618500	2317800	3670	2217	3435	7267;7268	17655;17656	17655	2694	2	9606
EQMYNILMWIHDNYRDPESETDNDSQEIFK	1	1	2 Oxidation (M)	3791.6356	0.63556994	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	1	9	0									1								21.187	21.187	4	1.0489E-05	16109	DP690-9	84.214	80.969			0.71014	0.82363	NaN	1	0	Median	8897700	4864400	4033200	3671	1046	3436	7269	17657;17658;17659;17660	17657	1596;1597	4	9606
EQNIVFNAETYSNLIK	1	0	Unmodified	1881.9472	0.94724273	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10	0										1							20.415	20.415	2	5.7723E-07	17388	DP690-10	174.21	174.21			0.94042	1.1561	NaN	1	0	Median	45064000	21563000	23501000	3672	732	3437	7270	17661;17662;17663	17661		3	9606
EQNKPDSSPLYIQNPFETSLNISK	2	0	Unmodified	2748.3606	0.36063936	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	1	12	0												1					19.912	19.912	3	2.0947E-10	15765	DP690-12	154.66	118.01			0.55798	0.64662	NaN	1	0	Median	37852000	22398000	15453000	3673	2240	3438	7271	17664;17665;17666;17667	17666		4	9606
EQNSPIYISR	0	1	Unmodified	1205.6041	0.60405094	2221	Q9NUP9;O14910;Q9HAP6	LIN7C;LIN7A;LIN7B	Protein lin-7 homolog C;Protein lin-7 homolog A;Protein lin-7 homolog B	yes	no	0	0	0	15	0															1		13.966	13.966	2	8.7792E-05	7348	DP690-15	158.87	158.87			0.55758	0.62171	NaN	1	0	Median	79069000	51139000	27929000	3674	2221	3439	7272	17668;17669	17669		2	9606
EQPEKEPELQQYVPQLQNNTILR	1	1	Unmodified	2793.4297	0.42972197	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	1	10	0										1							18.924	18.924	3	5.777E-10	15266	DP690-10	145.77	145.77			0.80033	0.99834	NaN	1	0	Median	88062000	49128000	38934000	3675	1252	3440	7273	17670;17671;17672	17670		3	9606
EQPLDEELKDAFQNAYLELGGLGER	1	1	Unmodified	2833.377	0.3770177	379	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	1	10.7	0.471										1	2						25.204	25.204	3	3.6249E-07	22959	DP690-11	140.2	140.2			0.86518	1.0068	3.5571	2	0	Median	24930000	13684000	11246000	3676	379	3441	7274;7275;7276	17673;17674;17675;17676;17677;17678;17679;17680	17676		8	9606
EQPPTEPGPQSASEVEK	1	0	Unmodified	1808.8428	0.84283724	2279	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	3	0			1														12.794	12.794	2	6.0548E-06	5772	DP690-3	127.78	96.43			0.64723	0.68995	NaN	1	0	Median	12829000	7103700	5724900	3677	2279	3442	7277	17681;17682;17683;17684	17684		4	9606
EQQHVMEELFQSSFR	0	1	Oxidation (M)	1909.8629	0.86286118	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	8.29	2.6		1							4	2							16.604	16.604	2;3	3.8529E-16	9938	DP690-9	233.97	208.41			0.88336	1.0897	8.3553	5	0	Median	616840000	349700000	267140000	3678	1046	3443	7278;7279;7280;7281;7282;7283;7284	17685;17686;17687;17688;17689;17690;17691;17692;17693;17694;17695;17696;17697;17698;17699;17700;17701	17694	1598	17	9606
EQQHVMEELFQSSFR	0	1	Unmodified	1893.8679	0.86794655	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									2	2							19.044	19.044	2;3	2.5560000000000002E-20	15372	DP690-10	288.96	267.42			0.86043	1.0758	6.5096	3	0	Median	323530000	182180000	141350000	3679	1046	3443	7285;7286;7287;7288	17702;17703;17704;17705;17706;17707;17708;17709;17710;17711;17712	17702		11	9606
EQQIVIQSSGGLSKDDIENMVK	2	0	Unmodified	2417.2108	0.210804	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	11	0											1						17.82	17.82	3	2.1932E-06	13471	DP690-11	129.89	96.187			NaN	NaN	NaN	0	0	Median	23052000	23052000	0	3680	695	3444	7289	17713	17713		1	9606
EQQIVIQSSGGLSKDDIENMVK	2	0	Oxidation (M)	2433.2057	0.20571862	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	4	0				1													15.844	15.844	3	1.7921E-06	9556	DP690-4	127.37	109.21			2.4785	2.5601	NaN	1	0	Median	12860000	2995600	9864000	3681	695	3444	7290	17714;17715	17715	1008	2	9606
EQSGTIYLQHADEEREK	1	1	Unmodified	2031.9498	0.94976193	688	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	1	9.33	3.77				1								2					12.091	12.091	3;4	6.2726E-07	4888	DP690-12	140.84	125.72			0.88348	1.0309	18.398	3	0	Median	193340000	107380000	85961000	3682	688	3445	7291;7292;7293	17716;17717;17718;17719;17720	17716		5	9606
EQSIFGDHRDEEEETHMK	1	1	Oxidation (M)	2231.9389	0.93893925	1365	Q16643	DBN1	Drebrin	yes	yes	0	1	1	11	0											1						11.408	11.408	3	0.0030714	4150	DP690-11	70.451	63.236			0.77298	0.95322	NaN	1	0	Median	22395000	13053000	9341700	3683	1365	3446	7294	17721	17721	2110	1	9606
EQSIFGDHRDEEEETHMK	1	1	Unmodified	2215.944	0.94402462	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	1	11	0											1						12.634	12.634	3	0.0079417	5940	DP690-11	59.345	40.644			1.0975	1.3833	NaN	1	0	Median	34113000	15563000	18550000	3684	1365	3446	7295	17722;17723	17722		2	9606
EQSILELGSLLAK	1	0	Unmodified	1399.7922	0.79224564	72	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	5	0					1												21.96	21.96	2	0.0031479	16780	DP690-5	89.403	66.031			1.2931	1.2951	NaN	1	0	Median	11591000	4791800	6799500	3685	72	3447	7296	17724;17725;17726	17724		3	9606
EQSLNVSQDLDTIR	0	1	Unmodified	1616.8006	0.8005785	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9.5	0.5									1	1							17.526	17.526	2	0.00021495	11776	DP690-9	116.54	83.13			0.72805	0.91004	NaN	1	0	Median	43593000	39110000	4482400	3686	1762	3448	7297;7298	17727;17728;17729	17728		3	9606
EQSQLTATQTR	0	1	Unmodified	1261.6262	0.62624295	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							10.584	10.584	2	8.1093E-05	3087	DP690-10	141.88	113.67			1.2805	1.5184	NaN	1	0	Median	234290000	101280000	133010000	3687	1492	3449	7299	17730;17731;17732	17730		3	9606
EQSQPCADNAVLSSGLTAAR	0	1	Unmodified	2073.9749	0.97493082	539	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	14	0														1			16.338	16.338	2	7.2998E-10	10759	DP690-14	164.7	134.67			0.94523	1.1453	NaN	1	0	Median	38812000	18131000	20681000	3688	539	3450	7300	17733;17734;17735;17736;17737	17734		5	9606
EQSSEAAETGVSENEENPVR	0	1	Unmodified	2160.9407	0.94071338	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10	0										1							13.289	13.289	2	2.2007E-64	7019	DP690-10	317.77	270.73			NaN	NaN	NaN	0	0	Median	36106000	36106000	0	3689	1377	3451	7301	17738;17739	17738		2	9606
EQTEGEYSSLEHESAR	0	1	Unmodified	1850.7919	0.7918643	193	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	6	0						1											12.667	12.667	3	0.00057528	5344	DP690-6	109.07	100.16			0.96045	1.0884	NaN	1	0	Median	17929000	10502000	7426700	3690	193	3452	7302	17740;17741	17741		2	9606
EQTEQILR	0	1	Unmodified	1015.5298	0.52982336	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														12.442	12.442	2	0.048078	5058	DP690-3	158.08	60.285			0.90273	0.95576	NaN	1	0	Median	102690000	50623000	52066000	3691	559	3453	7303	17742	17742		0	9606
EQVANSAFVER	0	1	Unmodified	1248.6099	0.6098646	416	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	5.75	3.11			1	1	1						1						13.353	13.353	2	2.2813E-06	6345	DP690-3	215.72	182.72			0.93869	0.99663	14.942	4	0	Median	873150000	436100000	437050000	3692	416	3454	7304;7305;7306;7307	17743;17744;17745;17746;17747;17748;17749;17750;17751;17752;17753;17754;17755;17756;17757;17758;17759;17760;17761	17745		19	9606
EQVHQGGVELQQLEAGLQEAGEEDTR	0	1	Unmodified	2849.3428	0.34275746	1676	Q8NBT2	SPC24	Kinetochore protein Spc24	yes	yes	0	0	0	15	0															1		19.423	19.423	3	0.022969	14484	DP690-15	73.058	73.058			1.2068	1.3944	NaN	1	0	Median	6717200	3603500	3113800	3693	1676	3455	7308	17762	17762		0	9606
EQVHQGGVELQQLEAGLQEAGEEDTRLK	1	1	Unmodified	3090.5218	0.52178446	1676	Q8NBT2	SPC24	Kinetochore protein Spc24	yes	yes	0	0	1	15	0															1		19.306	19.306	4	3.0353E-05	14359	DP690-15	96.41	88.478			0.56182	0.67018	NaN	1	0	Median	6149000	4320600	1828400	3694	1676	3456	7309	17763;17764;17765	17765		3	9606
EQVPGFTPR	0	1	Unmodified	1029.5243	0.52434406	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7	4			1								1						14.109	14.109	2	0.0021637	8066	DP690-11	113.18	73.629			0.77214	0.8247	8.6965	2	0	Median	632480000	347270000	285210000	3695	470	3457	7310;7311	17766;17767;17768;17769;17770;17771;17772;17773	17767		8	9606
EQVSPLETTLEK	1	0	Unmodified	1372.7086	0.70857559	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	10	0										1							16.007	16.007	2	0.0015582	11018	DP690-10	99.522	74.669			0.6266	0.77332	NaN	1	0	Median	110510000	61115000	49392000	3696	1794	3458	7312	17774;17775;17776	17775		3	9606
EQVYDAMGEKEEAK	2	0	Oxidation (M)	1641.7192	0.71921663	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	1	1	3	0			1														10.462	10.462	3	7.9122E-05	2701	DP690-3	116.63	98.27			0.9377	1.0041	NaN	1	0	Median	55742000	30630000	25112000	3697	788	3459	7313	17777;17778;17779;17780	17777	1173	4	9606
EQWIQDAEECDR	0	1	Unmodified	1577.6416	0.64163501	298	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	11	0											1						16.157	16.157	2	0.063247	11077	DP690-11	84.31	37.904			NaN	NaN	NaN	0	0	Median	0	0	0	3698	298	3460	7314	17781	17781		1	9606
EQYEALQEETR	0	1	Unmodified	1394.6314	0.6313879	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9.67	0.471									1	2							13.581	13.581	2	0.0039901	7450	DP690-10	123.63	71.047			NaN	NaN	NaN	0	0	Median	0	0	0	3699	2411	3461	7315;7316;7317	17782;17783;17784	17783		3	9606
ERDFTSLENTVEER	0	2	Unmodified	1723.8013	0.80130678	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	12	0												1					15.933	15.933	3	1.0475E-05	10324	DP690-12	126.77	71.872			0.72858	0.8261	NaN	1	0	Median	86861000	49923000	36938000	3700	1131	3462	7318	17785;17786	17786		2	9606
ERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSK	1	1	Unmodified	3846.6563	0.65627389	1996	Q9BTA9	WAC	WW domain-containing adapter protein with coiled-coil	yes	yes	0	0	1	12	0												1					10.037	10.037	6	0.0044579	2246	DP690-12	40.685	25.166			0.53422	0.64632	NaN	1	0	Median	4175700	2441100	1734600	3701	1996	3463	7319	17787;17788;17789;17790	17789		4	9606
ERDSELSDTDSGCCLGQSESDK	1	1	Unmodified	2473.9809	0.98093999	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	1	11	0											1						12.884	12.884	3	2.9625E-24	6281	DP690-11	210.33	210.33			0.67094	0.81744	NaN	1	0	Median	55469000	31665000	23804000	3702	1932	3464	7320	17791;17792;17793	17792		3	9606
EREVHILEEK	1	1	Unmodified	1280.6725	0.67246486	1211	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	1	2	0		1															10.783	10.783	3	0.027027	2881	DP690-2	58.511	31.084			0.66347	0.65312	NaN	1	0	Median	3477700	1970800	1506900	3703	1211	3465	7321	17794	17794		1	9606
ERGDQTVLILHAK	1	1	Unmodified	1478.8205	0.82052608	1125	Q06330	RBPJ	Recombining binding protein suppressor of hairless	yes	yes	0	0	1	12	0												1					12.566	12.566	3	0.0089707	5544	DP690-12	69.716	40.74			0.84639	0.9963	NaN	1	0	Median	94802000	53143000	41659000	3704	1125	3466	7322	17795;17796;17797;17798	17795		4	9606
ERHGNVASLVQR	0	2	Unmodified	1364.7273	0.72729439	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	1	11	0											1						10.598	10.598	3	0.068355	2979	DP690-11	40.676	20.472			0.83903	1.0343	NaN	1	0	Median	111080000	58746000	52332000	3705	2501	3467	7323	17799	17799		1	9606
ERHPGSFDVVHVK	1	1	Unmodified	1505.7739	0.77391024	986	P62701;P22090	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	yes	no	0	0	1	15	0															2		10.869	10.869	3;4	3.1144E-11	3542	DP690-15	220.31	186.21			0.9588	1.1001	30.906	2	0	Median	87047000	47451000	39596000	3706	986	3468	7324;7325	17800;17801;17802;17803;17804;17805;17806;17807;17808;17809;17810;17811;17812;17813;17814	17814		15	9606
ERIDFLPHYDTLVK	1	1	Unmodified	1744.9148	0.91482039	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							17.355	17.355	3	0.0047582	12929	DP690-10	83.856	63.05			0.56924	0.6836	NaN	1	0	Median	154580000	81891000	72691000	3707	13	3469	7326	17815	17815		1	9606
ERLELCDER	0	2	Unmodified	1218.5663	0.56628523	411	P07919	UQCRH	Cytochrome b-c1 complex subunit 6, mitochondrial	yes	yes	0	0	1	16	0																1	12.057	12.057	2	0.0047573	4674	DP690-16	123.35	76.929			0.62922	0.66479	NaN	1	0	Median	10095000	5572300	4523000	3708	411	3470	7327	17816	17816		1	9606
ERLEQQVPVNQVFGQDEMIDVIGVTK	1	1	Oxidation (M)	2986.507	0.50698602	698	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	1	11	2									1				1				19.282	19.282	3	0.00049053	14525	DP690-13	101.71	76.692			0.81583	0.94621	NaN	1	0	Median	15523000	12074000	3448800	3709	698	3471	7328;7329	17817;17818;17819;17820	17818	1021	4	9606
ERPSGSSLHTHGSTGTAEGGNMSR	0	2	Unmodified	2412.0836	0.083646423	1925	Q96SI1	KCTD15	BTB/POZ domain-containing protein KCTD15	yes	yes	0	0	1	14	0														1			10.138	10.138	4	0.0053076	2348	DP690-14	84.324	53.455			NaN	NaN	NaN	0	0	Median	4212900	4212900	0	3710	1925	3472	7330	17821;17822	17821		2	9606
ERPTDEEGFLHPPGEK	1	1	Unmodified	1836.8642	0.86424139	1281	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	1	9	0									1								13.716	13.716	3	0.042957	6843	DP690-9	79.326	42.881			NaN	NaN	NaN	0	0	Median	9659600	0	9659600	3711	1281	3473	7331	17823	17823		1	9606
ERPTPSLNNNCTTSEDSLVLYNR	0	2	Unmodified	2679.2559	0.25585671	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	4.2	2.93		1	3							1							15.903	15.903	3	1.4959E-24	10897	DP690-10	208.89	180.69			0.79567	0.86782	1.2106	2	0	Median	139800000	73581000	66224000	3712	408	3474	7332;7333;7334;7335;7336	17824;17825;17826;17827;17828;17829;17830;17831;17832;17833;17834;17835;17836	17825		13	9606
ERPVQLGGVEQR	0	2	Unmodified	1366.7317	0.73171107	2046	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	1	10	0										1							11.599	11.599	2	0.021031	4564	DP690-10	84.479	38.321			0.54603	0.65035	NaN	1	0	Median	15911000	9753800	6157000	3713	2046	3475	7337	17837	17837		1	9606
ERSGVSLAALKK	2	1	Unmodified	1257.7405	0.74048484	504;456	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	2	14	0														1			10.915	10.915	3	0.0044673	3387	DP690-14	76.073	38.517			0.94514	1.1376	NaN	1	0	Median	21495000	11498000	9996500	3714	456;504	3476	7338	17838;17839	17838		2	9606
ERTDVIQGDDVADATSEVEVSSTSETTPK	1	1	Unmodified	3065.416	0.41604156	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	1	9	0									1								16.621	16.621	3	3.9355E-06	10653	DP690-9	117.99	100.53			0.50045	0.58044	NaN	1	0	Median	7170500	4268500	2901900	3715	808	3477	7339	17840;17841;17842;17843;17844;17845	17842		6	9606
ERVEAVNMAEGIIHDTETK	1	1	Oxidation (M)	2157.0372	0.037196727	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	4	0				1													15.356	15.356	3	0.0055985	8972	DP690-4	97.488	65.613			NaN	NaN	NaN	0	0	Median	5423500	0	5423500	3716	695	3478	7340	17846;17847	17846	1009	2	9606
ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR	0	2	Unmodified	3245.7044	0.70444027	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	1	10.7	1.25									1		1	1					16.569	16.569	3	1.2011E-15	11742	DP690-11	151.05	138.7			0.32088	0.39556	NaN	1	0	Median	354550000	271870000	82681000	3717	1793	3479	7341;7342;7343	17848;17849;17850;17851;17852;17853;17854;17855;17856;17857;17858	17851		11	9606
ESADPLGAWLQDAR	0	1	Unmodified	1527.7318	0.73177065	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.75	0.433									1	3							21.205	21.205	2	3.5378E-19	16234	DP690-9	284.73	232			0.78212	0.91763	1.8865	2	0	Median	426110000	195860000	230260000	3718	1319	3480	7344;7345;7346;7347	17859;17860;17861;17862;17863;17864;17865;17866;17867;17868	17868		10	9606
ESAFQSEPR	0	1	Unmodified	1049.4778	0.47778779	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	2	0		1															11.149	11.149	2	0.083259	3379	DP690-2	57.96	33.441			0.92296	0.94403	NaN	1	0	Median	2213200	962470	1250700	3719	1437	3481	7348	17869;17870	17869		2	9606
ESDDGTEELEVR	0	1	Unmodified	1377.5896	0.58958267	2191	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	yes	yes	0	0	0	3	0			1														14.105	14.105	2	0.0073349	7509	DP690-3	79.659	49.885			1.1107	1.2687	NaN	1	0	Median	13603000	6469600	7133700	3720	2191	3482	7349	17871	17871		1	9606
ESDTKNEVNGTSEDIKSEGDTQSN	2	0	Unmodified	2583.1056	0.10560646	309	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	2	12	0												1					11.878	11.878	3	0.00023845	4674	DP690-12	108.25	108.25			0.91484	1.0735	NaN	1	0	Median	12514000	6108400	6406000	3721	309	3483	7350	17872;17873;17874;17875	17874		4	9606
ESEIIDFFLGASLKDEVLK	2	0	Unmodified	2152.1304	0.13035206	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	1	14	0														1			23.922	23.922	3	0.013517	20440	DP690-14	55.912	55.912			0.84463	0.93963	NaN	1	0	Median	7868500	4273100	3595400	3722	502	3484	7351	17876	17876		1	9606
ESEIPTSEIQTPSYGFSLLK	1	0	Unmodified	2225.1103	0.1103449	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	10	0										1							20.907	20.907	2	5.7921E-05	18090	DP690-10	131.66	97.399			NaN	NaN	NaN	0	0	Median	10364000	10364000	0	3723	1602	3485	7352	17877	17877		1	9606
ESEITDEDIDGILER	0	1	Unmodified	1732.8003	0.80030372	198	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	11	0											1						19.611	19.611	2	0.015091	16133	DP690-11	99.215	65.986			NaN	NaN	NaN	0	0	Median	21167000	0	21167000	3724	198	3486	7353	17878	17878		1	9606
ESESAPGDFSLSVK	1	0	Unmodified	1451.678	0.67800374	1010	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	0	11	4							1								1		16.496	16.496	2	0.0013844	10157	DP690-7	95.477	61.556			0.94165	1.056	6.4497	2	0	Median	78919000	41088000	37831000	3725	1010	3487	7354;7355	17879;17880;17881;17882;17883	17882		5	9606
ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK	1	0	Oxidation (M)	3342.5166	0.51664078	2017	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	1	0	7.67	3.77					2								1				18.852	18.852	3	1.4955E-07	12929	DP690-5	77.917	67.769			0.99022	1.0617	1.4761	2	0	Median	217320000	69490000	147830000	3726	2017	3488	7356;7357;7358	17884;17885;17886;17887;17888;17889;17890;17891;17892;17893;17894;17895;17896;17897;17898	17891	2551	15	9606
ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK	1	0	Unmodified	3326.5217	0.52172616	2017	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	9	4					1								1				20.185	20.185	3	1.0141E-07	14423	DP690-5	93.505	59.491			1.0837	1.0796	NaN	1	0	Median	90364000	46702000	43662000	3727	2017	3488	7359;7360	17899;17900;17901;17902;17903;17904	17904		6	9606
ESESVDKVMDQK	2	0	Unmodified	1393.6395	0.63950975	1243	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	1	13.5	0.5													1	1			11.874	11.874	2;3	0.00015458	4536	DP690-13	184.36	108.14			0.79484	0.90123	5.0743	2	0	Median	22629000	11551000	11078000	3728	1243	3489	7361;7362	17905;17906;17907;17908	17905		4	9606
ESFDPSAFLVPR	0	1	Unmodified	1363.6772	0.67721588	1695	Q8NFA0;P35125	USP32;USP6	Ubiquitin carboxyl-terminal hydrolase 32;Ubiquitin carboxyl-terminal hydrolase 6	yes	no	0	0	0	16	0																1	15.247	15.247	2	0.028478	8851	DP690-16	68.224	28.677			0.89349	1.0273	NaN	1	0	Median	30268000	15444000	14823000	3729	1695	3490	7363	17909;17910	17910		2	9606
ESGFSYPNFSLPAANGLSSGVGGGGGK	1	0	Unmodified	2513.1823	0.18228106	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	10	0										1							20.562	20.562	2	0.0031238	17488	DP690-10	87.16	55.496			NaN	NaN	NaN	0	0	Median	0	0	0	3730	807	3491	7364	17911	17911		1	9606
ESGSLSPEHGPVVVHCSAGIGR	0	1	Unmodified	2231.0753	0.075313568	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	13	0													2				13.118	13.118	3;4	1.3640999999999999E-44	6083	DP690-13	271.68	250.73			0.75108	0.86649	NaN	1	0	Median	317900000	113740000	204170000	3731	521	3492	7365;7366	17912;17913;17914;17915;17916;17917	17913		6	9606
ESGVGQTDWSGVEAGEFLK	1	0	Unmodified	1994.9222	0.92215019	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10.7	0.471										1	2						19.87	19.87	2	3.2894E-06	16583	DP690-10	131.35	109.03			0.88909	1.0996	NaN	1	0	Median	72778000	44832000	27946000	3732	2065	3493	7367;7368;7369	17918;17919;17920;17921;17922;17923;17924;17925	17920		8	9606
ESHATLVFHNLLGEIDQQYSR	0	1	Unmodified	2456.2084	0.20843623	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	3	0			1														19.88	19.88	4	4.9552E-05	14952	DP690-3	111.63	100.94			0.80673	0.9162	NaN	1	0	Median	11239000	6872500	4366700	3733	708	3494	7370	17926;17927;17928;17929	17926		4	9606
ESIEEPSAK	1	0	Unmodified	988.47131	0.47130543	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							10.842	10.842	2	0.0045934	3467	DP690-10	101.43	35.358			0.82731	1.0215	NaN	1	0	Median	150050000	82166000	67886000	3734	269	3495	7371	17930;17931	17930		2	9606
ESIGNVQVLLEYHIAYLK	1	0	Unmodified	2088.1255	0.12554145	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	11	0											1						21.251	21.251	3	0.0013135	18237	DP690-11	74.726	54.475			0.83458	1.0157	NaN	1	0	Median	36749000	22498000	14252000	3735	829	3496	7372	17932;17933	17932		2	9606
ESIGSLQNGTHTPSTAMETAIPFR	0	1	Oxidation (M)	2560.2228	0.22276567	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	1	0	12	0												1					16.322	16.322	3	0.00063128	10908	DP690-12	74.214	57.699			0.62233	0.73949	NaN	1	0	Median	60623000	42140000	18483000	3736	2240	3497	7373	17934;17935;17936	17934	2708	3	9606
ESILGGVLK	1	0	Unmodified	914.54368	0.54368251	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										1							17.717	17.717	2	0.060465	13602	DP690-10	64.207	27.506			0.95768	1.1825	NaN	1	0	Median	57765000	23224000	34541000	3737	1901	3498	7374	17937;17938	17938		2	9606
ESKEEETSIDVAGKPNEVTK	3	0	Unmodified	2189.0699	0.069936644	882	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	2	11.8	1.95									1	1	1		1	2			11.949	11.949	3;4	1.2032E-17	4636	DP690-14	197.94	162.9			0.768	0.8332	8.643	6	0	Median	268450000	137450000	131000000	3738	882	3499	7375;7376;7377;7378;7379;7380	17939;17940;17941;17942;17943;17944;17945;17946;17947;17948;17949;17950;17951;17952;17953;17954;17955;17956;17957;17958;17959;17960;17961;17962	17956		24	9606
ESLDTGSMGPGDCR	0	1	Oxidation (M)	1496.5872	0.5871566	132	O15037	KHNYN	Protein KHNYN	yes	yes	0	1	0	3.5	0.5			1	1													11.447	11.447	2	0.006928	4003	DP690-4	84.479	72.843			0.72247	0.82327	NaN	1	0	Median	1684000	973800	710170	3739	132	3500	7381;7382	17963;17964;17965;17966;17967	17966	150	5	9606
ESLSAATAQAAER	0	1	Unmodified	1303.6368	0.63680763	1519	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	2	0		1															13.498	13.498	2	0.0010441	5940	DP690-2	102.53	45.615			1.3637	1.4269	NaN	1	0	Median	5481800	1982900	3498900	3740	1519	3501	7383	17968;17969;17970	17969		3	9606
ESMAGNKPANAVLHK	2	0	Oxidation (M)	1581.7933	0.79332505	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	1	10	0										1							10.289	10.289	3	0.055488	2587	DP690-10	45.347	24.92			0.71452	0.85051	NaN	1	0	Median	149320000	83919000	65397000	3741	1297	3502	7384	17971	17971		1	9606
ESNAEYLASLFPTCTVVK	1	0	Unmodified	2027.9874	0.98739299	1455	Q658P3	STEAP3	Metalloreductase STEAP3	yes	yes	0	0	0	12.5	0.5												1	1				21.652	21.652	2	6.4552E-13	17592	DP690-13	182.37	182.37			0.65698	0.76196	NaN	1	0	Median	18456000	10863000	7592200	3742	1455	3503	7385;7386	17972;17973;17974;17975;17976	17975		5	9606
ESNCYDPER	0	1	Unmodified	1168.4455	0.44550139	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	6	4		1								1							10.875	10.875	2	0.0014614	3530	DP690-10	120.87	100.35			1.0213	1.1544	25.891	2	0	Median	64920000	35620000	29300000	3743	1075	3504	7387;7388	17977;17978;17979	17977		3	9606
ESNSLCPAGIR	0	1	Unmodified	1202.5714	0.5713706	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															13.439	13.439	2	0.00036648	5822	DP690-2	117.81	97.814			0.72588	0.7585	NaN	1	0	Median	11440000	6706200	4733800	3744	2418	3505	7389	17980;17981;17982;17983	17980		4	9606
ESPEVLLTLDILK	1	0	Unmodified	1468.8389	0.83886148	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								23.14	23.14	2	5.0834E-05	18453	DP690-9	135.8	101.71			0.79752	0.88959	12.299	2	0	Median	8160700	4772200	3388500	3745	1264	3506	7390;7391	17984;17985;17986;17987;17988;17989	17988		6	9606
ESPNPPNPSGQCPICR	0	1	Unmodified	1808.7934	0.7934014	2238	Q9NVS2	MRPS18A	28S ribosomal protein S18a, mitochondrial	yes	yes	0	0	0	15.5	0.5															1	1	12.926	12.926	2	4.7305E-07	5926	DP690-15	161.25	128.4			0.51262	0.59625	31.649	2	0	Median	10780000	7696000	3084100	3746	2238	3507	7392;7393	17990;17991;17992;17993	17990		4	9606
ESQAKDVIEEYFK	2	0	Unmodified	1584.7672	0.7671531	582	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	1	16	0																1	18.137	18.137	3	0.00045939	12479	DP690-16	101.38	101.38			0.95217	1.0919	NaN	1	0	Median	11143000	5521800	5621400	3747	582	3508	7394	17994;17995;17996	17995		3	9606
ESQFLKEELVAAVEDVRK	2	1	Unmodified	2089.1055	0.10553429	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	2	11	0											1						19.216	19.216	3	1.2463E-06	15446	DP690-11	135.95	110.34			0.67507	0.81664	NaN	1	0	Median	121690000	69199000	52494000	3748	657	3509	7395	17997;17998;17999	17997		3	9606
ESQLLLNVVSQLAK	1	0	Unmodified	1540.8825	0.88245763	136	O15091	KIAA0391	Mitochondrial ribonuclease P protein 3	yes	yes	0	0	0	12	0												1					22.655	22.655	2	1.9788E-05	19078	DP690-12	149.41	149.41			0.81596	0.99027	NaN	1	0	Median	5620300	3317600	2302700	3749	136	3510	7396	18000;18001;18002;18003	18002		4	9606
ESQSHPGDFVLSVR	0	1	Unmodified	1556.7583	0.75831975	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	4	0				1													15.26	15.26	3	2.6679E-05	8963	DP690-4	123.95	80.399			0.79501	0.88279	NaN	1	0	Median	39682000	22187000	17495000	3750	1120	3511	7397	18004;18005;18006	18006		3	9606
ESQSPDTTIQR	0	1	Unmodified	1260.5946	0.59460847	1799	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	3	0			1														10.654	10.654	2	0.00025478	2996	DP690-3	166.07	134.58			1.1877	1.2972	NaN	1	0	Median	56883000	24065000	32818000	3751	1799	3512	7398	18007;18008;18009;18010;18011	18007		5	9606
ESQSVEEALK	1	0	Unmodified	1118.5455	0.54553301	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	4	0				1													12.782	12.782	2	0.012462	5554	DP690-4	80.219	39.337			0.81605	0.88895	NaN	1	0	Median	20904000	11281000	9623300	3752	813	3513	7399	18012	18012		1	9606
ESQSVEEALKK	2	0	Unmodified	1246.6405	0.64049603	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	1	3	0			1														10.98	10.98	2	0.00020789	3388	DP690-3	147.4	98.345			0.84756	0.91657	NaN	1	0	Median	20367000	11195000	9172100	3753	813	3514	7400	18013;18014;18015;18016;18017	18014		5	9606
ESQVSILQSLFGER	0	1	Unmodified	1591.8206	0.82058566	195	O43913	ORC5	Origin recognition complex subunit 5	yes	yes	0	0	0	13	0													2				22.934	22.934	2	3.748E-46	18968	DP690-13	258.01	190.89			0.79086	0.97073	NaN	1	0	Median	23406000	8018400	15387000	3754	195	3515	7401;7402	18018;18019;18020;18021;18022	18021		5	9606
ESSEDSFLSAIINYTNSSTVHFK	1	0	Unmodified	2575.2078	0.20782711	895	P55196	MLLT4	Afadin	yes	yes	0	0	0	10	0										1							23.351	23.351	3	9.9381E-05	21166	DP690-10	115.02	97.587			1.2151	1.4728	NaN	1	0	Median	6224600	3980900	2243800	3755	895	3516	7403	18023;18024	18023		2	9606
ESSLPSKEALEPSGENVIQNK	2	0	Unmodified	2255.1281	0.12812022	257	O75477	ERLIN1	Erlin-1	yes	yes	0	0	1	14	0														1			14.586	14.586	3	0.00072671	8330	DP690-14	79.695	61.474			0.62313	0.69887	NaN	1	0	Median	40191000	23013000	17178000	3756	257	3517	7404	18025;18026;18027;18028	18027		4	9606
ESSLTEPVIVGLLK	1	0	Unmodified	1483.8498	0.84976052	1291	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	4	0				1													21.12	21.12	2	1.6723E-05	15975	DP690-4	127.42	109.61			0.62571	0.68007	NaN	1	0	Median	9776200	4864500	4911700	3757	1291	3518	7405	18029;18030;18031;18032;18033;18034	18033		6	9606
ESSTESSQSAKPVSGQDTSGNTEGSPAAEK	2	0	Unmodified	2952.3068	0.30682546	1923	Q96S66	CLCC1	Chloride channel CLIC-like protein 1	yes	yes	0	0	1	4	0				1													10.382	10.382	3	1.3186E-05	2769	DP690-4	98.151	94.31			0.72254	0.7464	NaN	1	0	Median	13053000	7351700	5701700	3758	1923	3519	7406	18035;18036	18035		2	9606
ESSTVFELK	1	0	Unmodified	1038.5233	0.523341	1328	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	0	8	0								1									15.747	15.747	2	0.0066456	8934	DP690-8	93.162	64.944			12.707	13.791	NaN	1	0	Median	33615000	2441500	31174000	3759	1328	3520	7407	18037;18038	18037		2	9606
ESSTVFELKR	1	1	Unmodified	1194.6245	0.62445203	1328	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	1	8	0								1									13.414	13.414	2	0.00030647	6269	DP690-8	137.14	105.83			14.979	17.417	NaN	1	0	Median	27037000	1409400	25628000	3760	1328	3521	7408	18039;18040	18040		2	9606
ESTESSNTTIEDEDVK	1	0	Unmodified	1782.7643	0.76431215	1224	Q13557	CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit delta	yes	yes	0	0	0	13	0													1				12.54	12.54	2	2.1788E-17	5278	DP690-13	219.74	203.79			0.98601	1.1456	NaN	1	0	Median	32828000	18584000	14243000	3761	1224	3522	7409	18041;18042;18043;18044	18041		4	9606
ESTESSNTTIEDEDVKAR	1	1	Unmodified	2009.9025	0.90253696	1224	Q13557	CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit delta	yes	yes	0	0	1	13	0													1				11.672	11.672	3	0.057118	4306	DP690-13	41.323	27.282			1.0686	1.3209	NaN	1	0	Median	19603000	9972400	9631000	3762	1224	3523	7410	18045	18045		1	9606
ESTFLDEGPDDEQEVPLR	0	1	Unmodified	2074.9331	0.93310881	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									3								18.433	18.433	2	7.6701E-08	12905	DP690-9	180.09	142.76			NaN	NaN	NaN	0	0	Median	0	0	0	3763	1048	3524	7411;7412;7413	18046;18047;18048	18046		3	9606
ESTGAQVQVAGDMLPNSTER	0	1	Oxidation (M)	2104.9695	0.96951109	1326;1325	Q15366;P57721;Q15365	PCBP2;PCBP3;PCBP1	Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1	no	no	0	1	0	13	2.69						1							1	5	1		15.011	15.011	2;3	3.8429E-23	7433	DP690-6	225.31	171.71			1.0036	1.1722	16.737	5	0	Median	1115000000	565420000	549610000	3764	1326;1325	3525	7414;7415;7416;7417;7418;7419;7420;7421	18049;18050;18051;18052;18053;18054;18055;18056;18057;18058;18059;18060;18061;18062;18063;18064;18065;18066;18067;18068;18069;18070;18071;18072;18073	18071	2052	25	9606
ESTGAQVQVAGDMLPNSTER	0	1	Unmodified	2088.9746	0.97459647	1326;1325	Q15366;P57721;Q15365	PCBP2;PCBP3;PCBP1	Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1	no	no	0	0	0	9	3.56						1	1							1			16.34	16.34	2	1.2112E-34	10592	DP690-14	280.5	241.11			0.81783	0.91224	7.4552	2	0	Median	704740000	370730000	334010000	3765	1326;1325	3525	7422;7423;7424	18074;18075;18076;18077;18078;18079;18080;18081;18082	18076		9	9606
ESTLHLVLR	0	1	Unmodified	1066.6135	0.61349341	1009	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	7.09	4.48	1	1	2	1				1	1	1	1	1			1		14.756	14.756	2;3	1.3613E-05	7394	DP690-2	178.99	125.22			1.0934	1.2788	58.338	10	0	Median	1598199999.9999998	566790000	1031399999.9999999	3766	1009	3526	7425;7426;7427;7428;7429;7430;7431;7432;7433;7434;7435	18083;18084;18085;18086;18087;18088;18089;18090;18091;18092;18093;18094;18095;18096;18097;18098;18099;18100;18101;18102;18103;18104;18105;18106;18107;18108;18109	18094		27	9606
ESTNYPGDYTLCVSCDGK	1	0	Unmodified	2064.8405	0.84047075	719	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	5	0					1												16.534	16.534	2	1.6963E-09	9990	DP690-5	148.52	147.48			0.58221	0.58271	NaN	1	0	Median	14543000	6232300	8310700	3767	719	3527	7436	18110;18111;18112;18113	18113		4	9606
ESTTTPGQYVLTGLQSGQPK	1	0	Unmodified	2091.0484	0.048413341	613	P29353	SHC1	SHC-transforming protein 1	yes	yes	0	0	0	4	0				1													18.061	18.061	2	0.00026779	12430	DP690-4	121.18	79.965			NaN	NaN	NaN	0	0	Median	6768000	6768000	0	3768	613	3528	7437	18114;18115	18114		2	9606
ESVDHLTIPSR	0	1	Unmodified	1252.6412	0.64116473	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	10	0										1							13.949	13.949	3	0.0087092	7937	DP690-10	70.685	33.071			0.75024	0.9271	NaN	1	0	Median	118510000	75366000	43143000	3769	721	3529	7438	18116;18117	18117		2	9606
ESVEQQADSFK	1	0	Unmodified	1266.5728	0.57281039	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	3	0			1														14.009	14.009	2	0.00011604	7346	DP690-3	162.88	98.31			0.6898	0.73337	NaN	1	0	Median	29454000	17826000	11628000	3770	203	3530	7439	18118;18119	18119		2	9606
ESVFTVEGGHR	0	1	Unmodified	1216.5836	0.58364985	1948	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	14	0														2			12.763	12.763	2;3	7.7532E-05	5693	DP690-14	131.11	79.829			0.82147	0.97551	5.2568	2	0	Median	224160000	116510000	107650000	3771	1948	3531	7440;7441	18120;18121;18122;18123	18120		4	9606
ESYSIYVYK	1	0	Unmodified	1150.5546	0.55464113	399	P06899;Q16778;P33778;P23527;Q8N257;Q6DRA6;Q6DN03	HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC	Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	0	12	4								1								1	16.18	16.18	2	0.0010098	10125	DP690-16	125.81	93.002			0.88677	0.94616	14.874	2	0	Median	644360000	314810000	329550000	3772	399	3532	7442;7443	18124;18125;18126;18127;18128;18129	18126		6	9606
ESYSVYVYK	1	0	Unmodified	1136.539	0.53899107	224	P57053;O60814;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;Q99880	H2BFS;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BL	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L	yes	no	0	0	0	12	4								1								1	15.297	15.297	2	0.0010098	8870	DP690-16	125.81	78.82			0.91289	0.93718	12.664	2	0	Median	1765999999.9999998	854540000	911440000	3773	224	3533	7444;7445	18130;18131;18132;18133;18134;18135	18130		6	9606
ESYVETELIFALAK	1	0	Unmodified	1611.8396	0.83958976	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	11	0											1						22.758	22.758	2	0.0053108	20221	DP690-11	80.834	80.834			0.60223	0.73355	NaN	1	0	Median	6373700	3894000	2479700	3774	1075	3534	7446	18136	18136		1	9606
ETADTDTADQVMASFK	1	0	Unmodified	1728.7512	0.75124504	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	8.33	3.77			1								2						18.743	18.743	2	0.0001978	14803	DP690-11	143.55	97.141			NaN	NaN	NaN	0	0	Median	55624000	27515000	28109000	3775	476	3535	7447;7448;7449	18137;18138;18139;18140;18141;18142;18143	18139		7	9606
ETADTDTADQVMASFK	1	0	Oxidation (M)	1744.7462	0.74615966	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	1	0	8.33	3.77			1								2						15.342	15.342	2	9.5716E-07	9057	DP690-3	153.49	104.03			1.789	1.9227	NaN	1	0	Median	19403000	7341800	12061000	3776	476	3535	7450;7451;7452	18144;18145;18146;18147;18148;18149	18147	577	6	9606
ETAENYLGHTAK	1	0	Unmodified	1332.631	0.63099397	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	4	0				1													11.678	11.678	2	0.004033	4319	DP690-4	88.134	37.661			5.5975	6.0357	NaN	1	0	Median	7120900	1179400	5941500	3777	695	3536	7453	18150	18150		1	9606
ETAHSVLGSDANDVVITVPFDFGEK	1	0	Unmodified	2646.2813	0.2813264	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	12	0												1					20.933	20.933	3	0.033683	17028	DP690-12	62.193	40.885			NaN	NaN	NaN	0	0	Median	0	0	0	3778	1147	3537	7454	18151	18151		1	9606
ETANAIVSQQTPQR	0	1	Unmodified	1541.7798	0.77978347	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	10	4						1								1			12.594	12.594	2	6.3209E-15	5497	DP690-14	244.16	213.6			0.94159	1.0789	24.282	2	0	Median	211890000	112120000	99772000	3779	712	3538	7455;7456	18152;18153;18154;18155;18156	18154		5	9606
ETAVPGPLGIEDISPNLSPDDK	1	0	Unmodified	2263.122	0.12197221	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	10	0										2							20.415	20.415	2	0.00031676	17328	DP690-10	109.79	109.79			0.59633	0.73309	NaN	1	0	Median	46477000	28831000	17646000	3780	1167	3539	7457;7458	18157;18158;18159;18160	18158		4	9606
ETCLITFLLAGIECPR	0	1	Unmodified	1891.9536	0.95359044	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	11	0											1						25.758	25.758	2	4.8742E-07	23769	DP690-11	160.18	131.42			0.67456	0.83019	NaN	1	0	Median	6081500	3806100	2275500	3781	1524	3540	7459	18161;18162;18163	18161		3	9606
ETCVVVYTGYGNR	0	1	Unmodified	1516.698	0.69802768	1364	Q16637	SMN1	Survival motor neuron protein	yes	yes	0	0	0	14	0														1			15.284	15.284	2	0.0016536	9289	DP690-14	95.483	65.709			0.65612	0.79563	NaN	1	0	Median	28626000	17401000	11225000	3782	1364	3541	7460	18164	18164		1	9606
ETDCGVHINAGPEIGVASTK	1	0	Unmodified	2053.9739	0.97386819	1122	Q06210;O94808	GFPT1;GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	yes	no	0	0	0	3.5	0.5			1	1													14.919	14.919	3	5.3713E-05	8434	DP690-4	110.64	85.586			0.72957	0.78577	3.5222	2	0	Median	39809000	20288000	19522000	3783	1122	3542	7461;7462	18165;18166;18167;18168;18169	18169		5	9606
ETDFMAFHQEHEVR	0	1	Oxidation (M)	1790.7682	0.76823251	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	1	0	9	0									1								12.634	12.634	3	0.011285	5491	DP690-9	65.895	51.91			0.91883	1.1001	NaN	1	0	Median	37637000	19750000	17886000	3784	295	3543	7463	18170	18170	304	1	9606
ETDLQELFRPFGSISR	0	2	Unmodified	1893.9585	0.95847612	277	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	1	10	4						1								1			21.188	21.188	3	0.00041307	17296	DP690-14	93.494	64.153			0.91625	1.0301	9.1238	2	0	Median	71734000	38760000	32975000	3785	277	3544	7464;7465	18171;18172;18173;18174;18175;18176	18174		6	9606
ETDVVNFDDIASSENLLHLTANRPK	1	1	Unmodified	2797.3883	0.38825109	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	1	11	0											2						19.833	19.833	3;4	9.6135E-16	16381	DP690-11	168.83	126.5			0.74493	0.85055	NaN	1	0	Median	153360000	78784000	74578000	3786	2501	3545	7466;7467	18177;18178;18179;18180;18181	18181		5	9606
ETEFKDDSLPIKR	2	1	Unmodified	1576.8097	0.80968662	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	2	11	0											1						13.227	13.227	3	0.0034209	6770	DP690-11	109.16	69.578			NaN	NaN	NaN	0	0	Median	116650000	116650000	0	3787	2501	3546	7468	18182	18182		1	9606
ETENDDLTNVIQK	1	0	Unmodified	1517.7209	0.72093119	320	O95373	IPO7	Importin-7	yes	yes	0	0	0	3	0			2														15.54	15.54	2	0.0034462	9351	DP690-3	121.83	91.904			NaN	NaN	NaN	0	0	Median	18264000	18264000	0	3788	320	3547	7469;7470	18183;18184;18185	18185		3	9606
ETEPQNVDFSK	1	0	Unmodified	1292.5885	0.58846046	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	0	10	0										1							13.07	13.07	2	0.0018873	6662	DP690-10	99.013	56.617			0.75197	0.92827	NaN	1	0	Median	57103000	31976000	25127000	3789	2155	3548	7471	18186;18187;18188;18189	18187		4	9606
ETETVFVPVIQAGMEALK	1	0	Oxidation (M)	1977.0129	0.012879457	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	1	0	8.33	3.77			1								2						22.114	22.114	2	0.00034188	16701	DP690-3	113.25	94.921			0.79497	0.90733	15.869	2	0	Median	51109000	29121000	21988000	3790	883	3549	7472;7473;7474	18190;18191;18192;18193;18194;18195;18196;18197;18198;18199	18197	1340	10	9606
ETETVFVPVIQAGMEALK	1	0	Unmodified	1961.018	0.017964835	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	11	0											1						23.567	23.567	2	1.354E-09	21178	DP690-11	151.3	125.98			0.86441	1.0567	NaN	1	0	Median	23737000	12380000	11357000	3791	883	3549	7475	18200;18201;18202	18200		3	9606
ETGLMYSIMVHALR	0	1	Unmodified	1619.8164	0.81636868	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.25	0.433									3	1							20.588	20.588	3	0.00107	15570	DP690-9	87.831	70.13			1.0008	1.2497	6.4277	2	0	Median	37738000	17108000	20630000	3792	1046	3550	7476;7477;7478;7479	18203;18204;18205;18206;18207	18205		5	9606
ETGLMYSIMVHALR	0	1	2 Oxidation (M)	1651.8062	0.80619792	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	9	0									1								16.145	16.145	3	0.00066216	10036	DP690-9	90.861	70.054			1.263	1.4628	NaN	1	0	Median	66833000	31821000	35012000	3793	1046	3550	7480	18208;18209	18208	1599;1600	2	9606
ETGLMYSIMVHALR	0	1	Oxidation (M)	1635.8113	0.8112833	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									1								17.771	17.771	3	0.0016832	12075	DP690-9	84.892	56.923			0.85971	1.0295	NaN	1	0	Median	37532000	20329000	17202000	3794	1046	3550	7481	18210;18211;18212;18213	18213	1599;1600	4	9606
ETGVDLTKDNMALQR	1	1	Oxidation (M)	1705.8305	0.83049842	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	4	0				1													13.47	13.47	3	0.0005609	6516	DP690-4	91.845	68.837			1.8337	2.0914	NaN	1	0	Median	33265000	9452800	23813000	3795	695	3551	7482	18214;18215	18214	1010	2	9606
ETGVPIAGR	0	1	Unmodified	898.48723	0.48723027	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	8.33	3.77			1								2						11.968	11.968	2	0.0029412	4930	DP690-11	108.09	53.476			0.84571	0.92615	8.4962	2	0	Median	464380000	249010000	215370000	3796	470	3552	7483;7484;7485	18216;18217;18218;18219;18220;18221;18222	18217		7	9606
ETGYPLAVK	1	0	Unmodified	976.52295	0.52294707	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	3	0			1														14.025	14.025	2	0.025179	7236	DP690-3	75.213	23.877			0.78497	0.81152	NaN	1	0	Median	86760000	48414000	38346000	3797	746	3553	7486	18223;18224	18223		2	9606
ETHMMGNEEETEFHGLR	0	1	Oxidation (M)	2061.852	0.85203849	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	1	0	13	0													2				13.033	13.033	3;4	5.2582E-23	5862	DP690-13	230.96	226.43			0.89668	1.0816	3.1566	2	0	Median	154880000	77988000	76892000	3798	1597	3554	7487;7488	18225;18226;18227;18228;18229;18230;18231	18230	2254;2255	6	9606
ETHMMGNEEETEFHGLR	0	1	2 Oxidation (M)	2077.847	0.84695312	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	2	0	13	0													1				12.126	12.126	3	5.4284E-27	4834	DP690-13	217.79	169.93			NaN	NaN	NaN	0	0	Median	44032000	0	44032000	3799	1597	3554	7489	18232;18233	18232	2254;2255	2	9606
ETIDAVPNAIPGR	0	1	Unmodified	1351.7096	0.70957864	184	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	0	12	0												1					15.977	15.977	2	4.2357E-08	10284	DP690-12	198.61	156.74			0.66873	0.69975	NaN	1	0	Median	892530000	522640000	369890000	3800	184	3555	7490	18234;18235;18236;18237	18234		4	9606
ETIDNNSVSSPLQSLQQR	0	1	Unmodified	2014.992	0.99196109	920	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	13	0													1				17.346	17.346	2	0.028394	11955	DP690-13	97.551	41.138			NaN	NaN	NaN	0	0	Median	0	0	0	3801	920	3556	7491	18238	18238		1	9606
ETKPEPMEEDLPENKK	3	0	Oxidation (M)	1928.9037	0.90372294	642	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	1	2	4	0				1													10.38	10.38	3	0.00030228	2700	DP690-4	100.18	41.369			0.94811	0.96465	NaN	1	0	Median	13712000	7201900	6510600	3802	642	3557	7492	18239;18240;18241	18239	897	3	9606
ETLLQSYNKR	1	1	Unmodified	1250.6619	0.66190017	1336	Q15528	MED22	Mediator of RNA polymerase II transcription subunit 22	yes	yes	0	0	1	16	0																1	12.803	12.803	2	0.000249	5714	DP690-16	141.52	102.71			0.85396	0.98042	NaN	1	0	Median	10450000	5424300	5025500	3803	1336	3558	7493	18242;18243;18244	18243		3	9606
ETLQELYK	1	0	Unmodified	1022.5284	0.52842638	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	12	0												1					15.304	15.304	2	0.054095	9474	DP690-12	113.5	73.853			0.89534	1.0221	NaN	1	0	Median	140260000	69843000	70417000	3804	1200	3559	7494	18245	18245		0	9606
ETLQLESAAEVGFVR	0	1	Unmodified	1647.8468	0.84680041	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	11	0											1						19.156	19.156	2	3.0817E-09	15447	DP690-11	196.16	196.16			0.94628	1.1375	NaN	1	0	Median	69866000	36974000	32892000	3805	736	3560	7495	18246;18247	18246		2	9606
ETLVYLTHLDYVDTER	0	1	Unmodified	1965.9684	0.96837211	128	O14980	XPO1	Exportin-1	yes	yes	0	0	0	6.2	3.92			3								2						18.783	18.783	2;3	9.8218E-05	13611	DP690-3	165.58	112.5			1.3822	1.5294	NaN	1	0	Median	138400000	81265000	57137000	3806	128	3561	7496;7497;7498;7499;7500	18248;18249;18250;18251;18252;18253	18252		6	9606
ETNISYSQEADDR	0	1	Unmodified	1526.6485	0.64849453	61	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	12	0												1					12.684	12.684	2	1.1492E-10	5727	DP690-12	246.08	185.25			0.86256	1.0234	NaN	1	0	Median	49578000	25569000	24010000	3807	61	3562	7501	18254;18255;18256;18257	18256		4	9606
ETNLDSLPLVDTHSK	1	0	Unmodified	1667.8366	0.83662965	424	P08670	VIM	Vimentin	yes	yes	0	0	0	12.9	3.3				1								2	3		2	2	16.304	16.304	2;3	2.8834E-14	10897	DP690-12	213.63	179.13			0.77614	0.86937	20.985	10	0	Median	4539600000	2474900000	2064699999.9999998	3808	424	3563	7502;7503;7504;7505;7506;7507;7508;7509;7510;7511	18258;18259;18260;18261;18262;18263;18264;18265;18266;18267;18268;18269;18270;18271;18272;18273;18274;18275;18276;18277;18278;18279;18280;18281;18282;18283;18284;18285;18286;18287;18288	18261		31	9606
ETNLDSLPLVDTHSKR	1	1	Unmodified	1823.9377	0.93774068	424	P08670	VIM	Vimentin	yes	yes	0	0	1	12.7	0.471												2	4				14.9	14.9	3;4	1.0939E-06	8419	DP690-13	160.04	129.17			0.82142	0.98367	15.2	6	0	Median	843720000	459890000	383830000	3809	424	3564	7512;7513;7514;7515;7516;7517	18289;18290;18291;18292;18293;18294;18295;18296;18297;18298;18299;18300;18301;18302	18296		13	9606
ETNPHHPPAWIASAR	0	1	Unmodified	1682.8277	0.82773672	298	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	11	0											1						12.119	12.119	3	0.050122	5136	DP690-11	73.834	53.71			0.60104	0.71655	NaN	1	0	Median	42390000	28401000	13988000	3810	298	3565	7518	18303	18303		0	9606
ETNPVVFFDVCADGEPLGR	0	1	Unmodified	2120.9837	0.98370459	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.5	0.5									1	1							21.685	21.685	2	0.00017566	16886	DP690-9	112.67	71.9			1.1665	1.457	54.442	2	0	Median	14128000	5952400	8175300	3811	808	3566	7519;7520	18304;18305;18306;18307	18307		4	9606
ETPFELIEALLK	1	0	Unmodified	1401.7755	0.77553294	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	10	0.816									1	1	1						27.485	27.485	2	0.0060992	25460	DP690-11	82.831	82.831			0.79755	0.93328	3.2395	2	0	Median	4473300	2395600	2077700	3812	1137	3567	7521;7522;7523	18308;18309;18310;18311;18312	18310		5	9606
ETPHSPGVEDAPIAK	1	0	Unmodified	1546.7627	0.76273643	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	11	0											2						12.244	12.244	2	0.0041355	5349	DP690-11	134.2	74.654			NaN	NaN	NaN	0	0	Median	0	0	0	3813	2340	3568	7524;7525	18313;18314	18314		2	9606
ETPPDALILESPFTNIR	0	1	Unmodified	1911.9942	0.99419293	1647	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	0	13	0													1				22.152	22.152	2	0.0029833	18082	DP690-13	115.34	85.338			NaN	NaN	NaN	0	0	Median	5473300	0	5473300	3814	1647	3569	7526	18315;18316	18315		2	9606
ETPPPLVPPAAR	0	1	Unmodified	1243.6925	0.69247202	1976	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	6	0						2											14.811	14.811	2	0.0010289	7987	DP690-6	105.1	105.1			2.2553	2.5598	0.79454	2	0	Median	36336000	9070600	27265000	3815	1976	3570	7527;7528	18317;18318;18319;18320	18320		4	9606
ETQAINSSLSTLGLVIMALSNK	1	0	Oxidation (M)	2305.2199	0.21991212	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	1	0	11	0											1						26.008	26.008	2	1.5589E-14	23978	DP690-11	165.16	144.42			0.76161	0.91384	NaN	1	0	Median	4361400	2401800	1959500	3816	2024	3571	7529	18321;18322;18323;18324	18323	2555	4	9606
ETQAINSSLSTLGLVIMALSNK	1	0	Unmodified	2289.225	0.2249975	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11	0											2						26.732	26.732	2	4.4346E-19	24745	DP690-11	181.69	159.83			0.86784	1.0153	NaN	1	0	Median	2304800	1051600	1253200	3817	2024	3571	7530;7531	18325;18326;18327;18328;18329;18330;18331;18332	18329		8	9606
ETQALILAPTR	0	1	Unmodified	1211.6874	0.68738664	696	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	13	0													1				15.793	15.793	2	9.5554E-05	9787	DP690-13	159.34	136.02			0.73951	0.86133	NaN	1	0	Median	159400000	92635000	66763000	3818	696	3572	7532	18333;18334;18335;18336	18336		4	9606
ETQVILLDTPGIISPGK	1	0	Unmodified	1779.9982	0.99821567	268	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	13	0													1				20.264	20.264	2	0.022979	15740	DP690-13	103.76	64.802			NaN	NaN	NaN	0	0	Median	0	0	0	3819	268	3573	7533	18337	18337		1	9606
ETSELGGSDVSILDTTR	0	1	Unmodified	1778.8534	0.85340193	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								17.814	17.814	2	4.6626E-06	12210	DP690-9	147.18	120.51			0.88826	1.1132	NaN	1	0	Median	6044200	3409500	2634800	3820	1453	3574	7534	18338;18339	18339		2	9606
ETSMVHELNR	0	1	Unmodified	1214.5714	0.5713706	951	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	0	14	0														1			11.465	11.465	3	0.016936	4101	DP690-14	64.374	41.812			0.8819	1.0694	NaN	1	0	Median	33566000	17869000	15698000	3821	951	3575	7535	18340	18340		1	9606
ETSSDVALASHILTALR	0	1	Unmodified	1782.9476	0.94757708	78	O00273	DFFA	DNA fragmentation factor subunit alpha	yes	yes	0	0	0	6	0						1											20.66	20.66	3	0.00027902	14785	DP690-6	95.236	79.815			1.0279	1.1498	NaN	1	0	Median	2674400	1239900	1434500	3822	78	3576	7536	18341;18342;18343;18344	18341		4	9606
ETSSTGEEALVAAVR	0	1	Unmodified	1518.7526	0.75256567	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	11	0											1						16.636	16.636	2	1.5048E-05	11793	DP690-11	155.33	117.03			0.99507	1.1611	NaN	1	0	Median	159380000	76618000	82762000	3823	2127	3577	7537	18345;18346;18347;18348;18349	18345		5	9606
ETSVNWCLADGYDLEILDGTR	0	1	Unmodified	2426.106	0.10600457	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						22.615	22.615	2	8.5738E-05	20020	DP690-11	120.21	74.047			0.49042	0.60603	NaN	1	0	Median	10275000	5510700	4764600	3824	897	3578	7538	18350;18351;18352	18350		3	9606
ETSYGLSFFKPR	1	1	Unmodified	1430.7194	0.71941505	2494	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	1	13	0													1				17.274	17.274	3	0.0017972	11867	DP690-13	87.001	67.36			0.49275	0.57004	NaN	1	0	Median	70083000	50022000	20062000	3825	2494	3579	7539	18353	18353		1	9606
ETTDTDTADQVIASFK	1	0	Unmodified	1740.8054	0.8053891	186	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	11	0											1						19.306	19.306	2	0.00085771	15644	DP690-11	97.551	70.402			0.97895	1.1851	NaN	1	0	Median	44007000	22536000	21471000	3826	186	3580	7540	18354;18355	18354		2	9606
ETTGTGPNVYHENDTIAK	1	0	Unmodified	1945.9017	0.9017491	1393	Q4G0F5	VPS26B	Vacuolar protein sorting-associated protein 26B	yes	yes	0	0	0	14	0														1			12.181	12.181	3	0.00020937	4941	DP690-14	98.227	68.653			0.69079	0.84011	NaN	1	0	Median	46998000	27349000	19650000	3827	1393	3581	7541	18356;18357;18358;18359	18357		4	9606
ETTYYDVLGVKPNATQEELKK	3	0	Unmodified	2425.2377	0.23767067	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	2	13	0													2				15.876	15.876	3;4	0.002972	10043	DP690-13	74.325	74.325			0.91642	0.95997	10.366	2	0	Median	198620000	110670000	87952000	3828	636	3582	7542;7543	18360;18361;18362;18363	18362		4	9606
ETVDSFLDLAR	0	1	Unmodified	1264.6299	0.62993134	734	P43007	SLC1A4	Neutral amino acid transporter A	yes	yes	0	0	0	8	4				1								1					20.334	20.334	2	0.00087276	16358	DP690-12	107.79	75.037			0.80014	0.93471	21.308	2	0	Median	22541000	14689000	7851700	3829	734	3583	7544;7545	18364;18365;18366;18367;18368	18366		5	9606
ETVEEQVSTTER	0	1	Unmodified	1406.6525	0.65251728	1230	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	5	3.46			3								1						13.043	13.043	2	1.9225E-13	6001	DP690-3	225.67	105.52			NaN	NaN	NaN	0	0	Median	2818300	2818300	0	3830	1230	3584	7546;7547;7548;7549	18369;18370;18371;18372;18373	18373		5	9606
ETVLSALSR	0	1	Unmodified	974.53966	0.53965977	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			1														16.637	16.637	2	0.00057673	10809	DP690-3	147.29	107.19			0.85051	0.95227	NaN	1	0	Median	35488000	19836000	15652000	3831	1739	3585	7550	18374;18375;18376	18375		3	9606
ETVNVITLYK	1	0	Unmodified	1178.6547	0.65468953	1958	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	13	0													1				17.392	17.392	2	0.0033119	11974	DP690-13	93.598	39.532			0.90232	1.0233	NaN	1	0	Median	126280000	66987000	59291000	3832	1958	3586	7551	18377;18378;18379;18380	18378		4	9606
ETVSEESNVLCLSK	1	0	Unmodified	1593.7556	0.75560214	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	7.8	3.66			1	1					1		1	1					16.457	16.457	2	7.3161E-15	11490	DP690-11	248.21	206.52			1.0203	1.0815	2.5884	3	0	Plateau	694140000	342260000	351880000	3833	483	3587	7552;7553;7554;7555;7556	18381;18382;18383;18384;18385;18386;18387;18388;18389;18390;18391;18392;18393;18394;18395	18383		15	9606
ETVYCLNDDDETEVLKEDIIQGFR	1	1	Unmodified	2900.3386	0.33858329	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	1	11	0											1						21.597	21.597	3	1.2617E-11	18766	DP690-11	161.31	139.64			0.91737	1.0973	NaN	1	0	Median	72142000	40209000	31933000	3834	480	3588	7557	18396;18397;18398;18399	18396		4	9606
ETYEEDREYESQAK	1	1	Unmodified	1775.7486	0.7486025	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	1	12	0												2					11.256	11.256	2;3	1.4079000000000001E-24	3822	DP690-12	219.92	179.3			0.74461	0.88109	NaN	1	0	Median	95049000	52700000	42349000	3835	1750	3589	7558;7559	18400;18401;18402;18403	18403		4	9606
ETYEVLLSFIQAALGDQPR	0	1	Unmodified	2149.1055	0.10553429	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	9.25	0.433									3	1							27.802	27.802	2	1.0452E-18	26035	DP690-10	213.18	193.4			0.73258	0.87701	NaN	1	0	Median	2840800	1609000	1231800	3836	269	3590	7560;7561;7562;7563	18404;18405;18406;18407;18408;18409;18410;18411	18407		8	9606
ETYTEDFIKK	2	0	Unmodified	1272.6238	0.62378333	1057	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	1	14	0														1			13.905	13.905	2	0.0055519	7357	DP690-14	98.582	72.961			0.75911	0.85117	NaN	1	0	Median	43331000	25603000	17728000	3837	1057	3591	7564	18412	18412		1	9606
ETYVEQEQGENANDRNDR	0	2	Unmodified	2165.921	0.920981	2440	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	1	10	1									1		1						10.781	10.781	3	8.9031E-05	3329	DP690-11	112.17	97.083			0.81184	0.93845	7.7305	2	0	Median	117210000	66101000	51105000	3838	2440	3592	7565;7566	18413;18414;18415;18416;18417;18418	18414		6	9606
EVAAFAQFGSDLDAATQQLLSR	0	1	Unmodified	2337.1601	0.16008906	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	13	0													1				24.882	24.882	2	7.9351E-37	21184	DP690-13	235.71	213.39			0.791	0.92981	NaN	1	0	Median	3591400	1875400	1715900	3839	585	3593	7567	18419;18420;18421	18421		3	9606
EVAAQGNDYSMAFLTQR	0	1	Oxidation (M)	1915.8734	0.87342586	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	1	0	10	0										1							16.788	16.788	2	0.069854	12124	DP690-10	82.515	48.645			NaN	NaN	NaN	0	0	Median	0	0	0	3840	1891	3594	7568	18422	18422		1	9606
EVADEVTRPR	0	2	Unmodified	1170.5993	0.59929991	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	11	0											1						10.631	10.631	3	0.010534	3071	DP690-11	101.46	47.703			NaN	NaN	NaN	0	0	Median	13528000	0	13528000	3841	652	3595	7569	18423	18423		1	9606
EVADEVTRPRPSGEEVLQDIQVMLK	1	2	Oxidation (M)	2853.4542	0.45422217	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	2	7	4			1								1						18.38	18.38	4	0.0016751	13147	DP690-3	59.814	43.224			0.6789	0.73186	18.593	2	0	Median	109990000	60724000	49271000	3842	652	3596	7570;7571	18424;18425;18426;18427;18428	18428	913	5	9606
EVAENQQNQSSDPEEEKGSQPPPAAESQSSLR	1	1	Unmodified	3452.5564	0.55639164	180	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	1	10	0										1							12.273	12.273	3	0.00036174	5510	DP690-10	78.757	61.14			NaN	NaN	NaN	0	0	Median	0	0	0	3843	180	3597	7572	18429	18429		1	9606
EVAETSMHNLLETDIEQVSQLSALVDAQLDYHR	0	1	Oxidation (M)	3769.8105	0.81049784	1964	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	1	0	5	0					1												24.073	24.073	4	5.4522E-08	19299	DP690-5	94.016	94.016			1.2154	1.2695	NaN	1	0	Median	9058400	3848100	5210300	3844	1964	3598	7573	18430;18431;18432	18430	2509	3	9606
EVAFFNNFLTDAK	1	0	Unmodified	1514.7405	0.74054442	2039	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	11	0											1						21.589	21.589	2	0.00012201	18712	DP690-11	122.69	93.14			0.868	1.0503	NaN	1	0	Median	62262000	33177000	29085000	3845	2039	3599	7574	18433;18434;18435	18433		3	9606
EVAGAKPHITAAEGK	2	0	Unmodified	1477.7889	0.7888916	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	1	11	0											1						10.298	10.298	3	7.2498E-06	2516	DP690-11	143.58	117.6			0.66719	0.72542	NaN	1	0	Median	506720000	295600000	211120000	3846	1375	3600	7575	18436;18437;18438	18436		3	9606
EVASNSELVQSSR	0	1	Unmodified	1404.6845	0.68448611	40	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	12.5	3.5									1							1	12.046	12.046	2	9.2815E-25	4700	DP690-16	211.64	103.07		+	NaN	NaN	NaN	0	0	Median	7799400	7799400	0	3847	40	3601	7576;7577	18439;18440;18441;18442	18440		4	9606
EVATNSELVQSGK	1	0	Unmodified	1360.6834	0.68342347	29;45	CON__P02533;P02533;CON__Q04695;Q04695;CON__Q9QWL7	KRT14;KRT17	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17	no	no	0	0	0	8.17	5.08	1	1	1	1	1			2	1				1	1	1	1	12.075	12.075	2	8.527E-07	4644	DP690-16	161.51	77.865		+	0.52943	0.60913	62.005	2	0	Median	270770000	194130000	76636000	3848	29;45	3602	7578;7579;7580;7581;7582;7583;7584;7585;7586;7587;7588;7589	18443;18444;18445;18446;18447;18448;18449;18450;18451;18452;18453;18454;18455;18456;18457;18458;18459;18460;18461;18462;18463;18464;18465;18466;18467	18456		25	9606
EVAYLGNEVSDEECLKR	1	1	Unmodified	2009.9364	0.93642005	1703	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	yes	yes	0	0	1	13	0													2				15.425	15.425	2;3	7.4832E-08	9366	DP690-13	150.37	126.73			0.90628	1.034	NaN	1	0	Median	86959000	44002000	42957000	3849	1703	3603	7590;7591	18468;18469;18470;18471	18470		4	9606
EVCEQNQQLLR	0	1	Unmodified	1415.6827	0.68271197	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										1							13.254	13.254	2	6.4137E-06	6947	DP690-10	194.9	161.63			0.75133	0.90141	NaN	1	0	Median	201300000	116100000	85196000	3850	311	3604	7592	18472;18473;18474;18475	18475		4	9606
EVCGFAPYER	0	1	Unmodified	1226.539	0.53900784	2478	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	12	4								1								1	15.14	15.14	2	0.0020847	8695	DP690-16	101.65	73.224			0.88606	1.0477	1.3425	2	0	Median	31864000	16577000	15287000	3851	2478	3605	7593;7594	18476;18477;18478;18479;18480	18477		5	9606
EVDATSPAPSTSSTVK	1	0	Unmodified	1575.7628	0.76279601	1367	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	11	0											1						11.728	11.728	2	3.4772E-07	4589	DP690-11	166.24	125.12			0.69965	0.85147	NaN	1	0	Median	36779000	19376000	17402000	3852	1367	3606	7595	18481;18482;18483;18484;18485;18486	18483		6	9606
EVDDLEQWIAER	0	1	Unmodified	1501.7049	0.7048872	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							20.874	20.874	2	8.5122E-07	17869	DP690-10	162.36	102.94			NaN	NaN	NaN	0	0	Median	19467000	0	19467000	3853	1080	3607	7596	18487;18488;18489	18487		3	9606
EVDDLGPEVGDIK	1	0	Unmodified	1384.6722	0.67219008	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	3	0			1														16.696	16.696	2	0.00010506	10903	DP690-3	138.25	80.29			0.91355	0.9708	NaN	1	0	Median	29991000	16548000	13442000	3854	161	3608	7597	18490;18491;18492;18493	18493		4	9606
EVDEGPSPPEQFTAVK	1	0	Unmodified	1728.8206	0.82064524	1272	Q14331	FRG1	Protein FRG1	yes	yes	0	0	0	14	0														1			15.718	15.718	2	0.0026508	9922	DP690-14	123.26	75.362			NaN	NaN	NaN	0	0	Median	11729000	11729000	0	3855	1272	3609	7598	18494;18495	18494		2	9606
EVDEQMLAIQSK	1	0	Oxidation (M)	1405.6759	0.67589525	2010;1217	Q13509;Q9BUF5	TUBB3;TUBB6	Tubulin beta-3 chain;Tubulin beta-6 chain	no	no	0	1	0	9	4					1								1				13.754	13.754	2	0.00015233	6512	DP690-5	135.86	104.44			1.2074	1.2827	3.4556	2	0	Median	202180000	96775000	105410000	3856	1217;2010	3610	7599;7600	18496;18497;18498;18499;18500;18501;18502;18503;18504;18505	18503	1861	10	9606
EVDEQMLAIQSK	1	0	Unmodified	1389.681	0.68098063	2010;1217	Q13509;Q9BUF5	TUBB3;TUBB6	Tubulin beta-3 chain;Tubulin beta-6 chain	no	no	0	0	0	9	4					1								1				15.909	15.909	2	3.6694E-05	9213	DP690-5	127.51	90.17			0.76515	0.82061	17.927	2	0	Median	149050000	74772000	74273000	3857	1217;2010	3610	7601;7602	18506;18507;18508;18509;18510;18511	18511		6	9606
EVDEQMLNVQNK	1	0	Oxidation (M)	1461.677	0.67695789	1034;406;2017	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	8.38	4.44	1	1	1	1	6	1	1	1	2			1	5	1	1	1	12.98	12.98	2	1.0086999999999999E-28	5226	DP690-5	256.47	164.81			0.91598	0.6126	30.146	15	0	Linear	6696699999.999999	3301099999.9999995	3395599999.9999995	3858	406;1034;2017	3611	7603;7604;7605;7606;7607;7608;7609;7610;7611;7612;7613;7614;7615;7616;7617;7618;7619;7620;7621;7622;7623;7624;7625;7626	18512;18513;18514;18515;18516;18517;18518;18519;18520;18521;18522;18523;18524;18525;18526;18527;18528;18529;18530;18531;18532;18533;18534;18535;18536;18537;18538;18539;18540;18541;18542;18543;18544;18545;18546;18547;18548;18549;18550;18551;18552;18553;18554;18555;18556;18557;18558;18559;18560;18561;18562;18563;18564;18565;18566;18567;18568;18569;18570;18571;18572;18573;18574;18575;18576;18577;18578;18579;18580;18581;18582;18583;18584;18585;18586	18567	441	74	9606
EVDEQMLNVQNK	1	0	Unmodified	1445.682	0.68204326	1034;406;2017	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	7.9	3.7				1	3	2		1					2	1			14.815	14.815	2	2.3978000000000002E-34	7848	DP690-5	237.92	155.09			1.0587	1.1174	12.299	8	0	Median	4511800000	2544600000	1967199999.9999998	3859	406;1034;2017	3611	7627;7628;7629;7630;7631;7632;7633;7634;7635;7636	18587;18588;18589;18590;18591;18592;18593;18594;18595;18596;18597;18598;18599;18600;18601;18602;18603;18604;18605;18606;18607;18608;18609;18610;18611;18612;18613;18614;18615;18616;18617;18618;18619	18608		33	9606
EVDEQMLSVQSK	1	0	Oxidation (M)	1407.6552	0.65515981	370	P04350	TUBB4A	Tubulin beta-4A chain	yes	yes	0	1	0	5	0					2												12.756	12.756	2	0.064811	5319	DP690-5	80.916	49.156			NaN	NaN	NaN	0	0	Median	0	0	0	3860	370	3612	7637;7638	18620;18621	18620		2	9606
EVDGLDVSK	1	0	Unmodified	960.47639	0.47639081	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								13.294	13.294	2	0.0499	6244	DP690-9	93.649	40.297			NaN	NaN	NaN	0	0	Median	0	0	0	3861	1264	3613	7639	18622	18622		1	9606
EVDIGIPDATGR	0	1	Unmodified	1241.6252	0.62518031	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	6.5	3.5			1							1							17.75	17.75	2	0.0010926	11067	DP690-3	128.81	85.16			NaN	NaN	NaN	0	0	Median	0	0	0	3862	893	3614	7640;7641	18623;18624	18624		2	9606
EVDLSDIINTPLPR	0	1	Unmodified	1580.841	0.84098675	812	P49848	TAF6	Transcription initiation factor TFIID subunit 6	yes	yes	0	0	0	11	0											1						21.55	21.55	2	0.0002679	18852	DP690-11	113.67	96.645			0.34146	0.42357	NaN	1	0	Median	8174000	5883800	2290200	3863	812	3615	7642	18625	18625		1	9606
EVDSKPVSQKPPPPSEK	3	0	Unmodified	1847.9629	0.9628928	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	2	7	4			1								1						10.214	10.214	3	0.00050524	2411	DP690-3	122.75	113.22			0.81303	0.84344	NaN	1	0	Median	5228700	2863800	2364900	3864	342	3616	7643;7644	18626;18627;18628	18628		3	9606
EVEAVDSEYQLAR	0	1	Unmodified	1507.7155	0.71545188	194	O43847	NRD1	Nardilysin	yes	yes	0	0	0	3	0			1														15.419	15.419	2	0.0018334	9254	DP690-3	134.57	53.228			NaN	NaN	NaN	0	0	Median	5155800	5155800	0	3865	194	3617	7645	18629	18629		1	9606
EVEAVIPDHCIFASNTSALPISEIAAVSK	1	0	Unmodified	3067.5536	0.55360186	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	11	0											1						21.17	21.17	3	1.4981E-06	18234	DP690-11	123.19	123.19			0.59659	0.72441	NaN	1	0	Median	39698000	25147000	14551000	3866	713	3618	7646	18630;18631	18631		2	9606
EVEEISLLQPQVEESVLNLGK	1	0	Unmodified	2352.2424	0.2424217	95	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	12	0												1					23.064	23.064	2	5.6417E-11	19523	DP690-12	202.13	202.13			0.8158	0.98637	NaN	1	0	Median	2357800	1214400	1143500	3867	95	3619	7647	18632;18633;18634;18635;18636	18632		5	9606
EVEETDEMDQVELVDFDPNQER	0	1	Oxidation (M)	2681.1287	0.12865009	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	1	0	13	0													1				19.19	19.19	2	1.4826E-71	14404	DP690-13	342.28	331			0.72264	0.88857	NaN	1	0	Median	25661000	14983000	10679000	3868	636	3620	7648	18637;18638;18639;18640;18641	18637	876	5	9606
EVEETDEMDQVELVDFDPNQER	0	1	Unmodified	2665.1337	0.13373547	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	13	0													1				20.472	20.472	2	1.8957E-23	16047	DP690-13	204.67	168.04			NaN	NaN	NaN	0	0	Median	4710900	0	4710900	3869	636	3620	7649	18642;18643	18642		2	9606
EVEGLKDLLVGPGVELLLTPR	1	1	Unmodified	2246.2886	0.28858403	1800	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	1	11	0											1						23.586	23.586	3	4.6517E-05	21204	DP690-11	117.6	107.45			0.69744	0.82476	NaN	1	0	Median	11069000	6622100	4447200	3870	1800	3621	7650	18644	18644		1	9606
EVEIVASSDSSISSK	1	0	Unmodified	1536.7519	0.75189697	1491	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	10	0										1							14.457	14.457	2	0.019199	8635	DP690-10	112.51	52.599			NaN	NaN	NaN	0	0	Median	12424000	12424000	0	3871	1491	3622	7651	18645	18645		1	9606
EVESMGAHLNAYSTR	0	1	Oxidation (M)	1679.7573	0.75733347	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	1	0	13.2	2.4									2				4		2	2	12.124	12.124	2;3	3.5723E-14	4297	DP690-13	218.02	174.37			0.83925	0.96472	6.2724	10	0	Median	3831099999.9999995	2386100000	1445000000	3872	637	3623	7652;7653;7654;7655;7656;7657;7658;7659;7660;7661	18646;18647;18648;18649;18650;18651;18652;18653;18654;18655;18656;18657;18658;18659;18660;18661;18662;18663;18664;18665;18666;18667;18668;18669;18670;18671;18672;18673;18674;18675;18676;18677;18678;18679;18680;18681;18682;18683;18684;18685;18686	18647	879	41	9606
EVESMGAHLNAYSTR	0	1	Unmodified	1663.7624	0.76241885	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	13	0													2				13.694	13.694	2;3	4.3484E-17	6836	DP690-13	251.91	213.04			0.84976	0.90776	6.3688	2	0	Median	2433200000	1293800000	1139400000	3873	637	3623	7662;7663	18687;18688;18689;18690;18691;18692;18693	18688		7	9606
EVESPYEVHDYIR	0	1	Unmodified	1634.7577	0.75765105	1512	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	10	0										1							15.524	15.524	3	0.0070299	10216	DP690-10	92.856	60.867			NaN	NaN	NaN	0	0	Median	88179000	88179000	0	3874	1512	3624	7664	18694;18695	18694		2	9606
EVEVIGGADKYHSVCR	1	1	Unmodified	1817.873	0.87303193	367	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	0	1	7	0							2										12.645	12.645	3;4	2.2592E-07	5447	DP690-7	154.6	134.51			0.75732	0.79819	0.47619	2	0	Median	130300000	71383000	58915000	3875	367	3625	7665;7666	18696;18697;18698;18699;18700;18701	18699		6	9606
EVFEFRPELVNDDDEEADDTR	0	2	Unmodified	2539.0987	0.09867059	1732	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	1	12	0												1					18.383	18.383	3	0.00013382	13704	DP690-12	105.95	85.829			0.84092	0.95347	NaN	1	0	Median	80374000	43790000	36584000	3876	1732	3626	7667	18702;18703	18702		2	9606
EVFFMNTQSIVQLVQR	0	1	Oxidation (M)	1953.9982	0.99823245	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	0		1															21.211	21.211	2	0.0015606	14850	DP690-2	128.28	96.935			NaN	NaN	NaN	0	0	Median	1054500	0	1054500	3877	1179	3627	7668	18704;18705	18705	1822	2	9606
EVFGTFGIPFLLR	0	1	Unmodified	1494.8235	0.82348619	1804	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	8	3.56			1							1	1						24.479	24.479	2	3.0825E-05	22262	DP690-11	135.55	114.85			1.459	1.7039	34.766	2	0	Median	13123000	5810600	7312000	3878	1804	3628	7669;7670;7671	18706;18707;18708;18709;18710;18711;18712;18713;18714;18715;18716;18717	18710		12	9606
EVFLVMPTGGGK	1	0	Unmodified	1233.6427	0.64274463	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	11.5	0.5											1	1					18.145	18.145	2	0.00023875	13343	DP690-12	137.46	79.87			0.70983	0.80692	NaN	1	0	Median	193160000	87472000	105690000	3879	751	3629	7672;7673	18718;18719;18720;18721;18722;18723;18724	18723		7	9606
EVFLVMPTGGGK	1	0	Oxidation (M)	1249.6377	0.63765925	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	1	0	12	0												1					15.784	15.784	2	0.0053856	10181	DP690-12	90.149	70.878			0.97302	1.1175	NaN	1	0	Median	127770000	61064000	66706000	3880	751	3629	7674	18725;18726;18727;18728	18726	1107	4	9606
EVFPVLAAK	1	0	Unmodified	972.56442	0.56441796	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			1														17.055	17.055	2	0.010258	11238	DP690-3	89.296	60.146			0.86308	0.9179	NaN	1	0	Median	29078000	14378000	14700000	3881	1739	3630	7675	18729;18730;18731;18732	18729		4	9606
EVFSSCSSEVVLSGDDEEYQR	0	1	Unmodified	2421.0278	0.027813833	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							17.483	17.483	2	2.5719E-48	11721	DP690-9	293.25	264.28			0.79834	0.99878	9.0699	2	0	Median	71944000	41294000	30650000	3882	1145	3631	7676;7677	18733;18734;18735;18736;18737;18738;18739;18740;18741;18742	18738		10	9606
EVGEHLVSIKK	2	0	Unmodified	1237.703	0.7030367	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	9.67	0.471									1	2							10.99	10.99	2;3	0.00081665	3757	DP690-10	117.53	63.46			0.87453	0.97358	5.3367	3	0	Plateau	404660000	218380000	186280000	3883	250	3632	7678;7679;7680	18743;18744;18745;18746;18747;18748;18749;18750;18751	18747		9	9606
EVGEHVVSVR	0	1	Unmodified	1109.5829	0.58292157	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	4	3.46		3								1							11.028	11.028	3	0.0038098	3798	DP690-10	82.029	47.842			1.3786	1.7242	NaN	1	0	Median	15484000	5612300	9872100	3884	1270	3633	7681;7682;7683;7684	18752;18753;18754;18755;18756;18757;18758	18754		7	9606
EVGMPADYVNK	1	0	Oxidation (M)	1237.5649	0.56488824	1805	Q93034	CUL5	Cullin-5	yes	yes	0	1	0	3	0			1														12.917	12.917	2	0.075946	5750	DP690-3	63.534	44.556			NaN	NaN	NaN	0	0	Median	5840800	2700100	3140700	3885	1805	3634	7685	18759	18759		1	9606
EVHNLNQLLYSQR	0	1	Unmodified	1612.8322	0.8321534	1400	Q53EZ4	CEP55	Centrosomal protein of 55 kDa	yes	yes	0	0	0	12	0												1					15.96	15.96	3	0.014792	10397	DP690-12	60.901	41.657			1.0282	1.2197	NaN	1	0	Median	39475000	16197000	23278000	3886	1400	3635	7686	18760;18761	18760		2	9606
EVIAEEEPPTVTEPLPENR	0	1	Unmodified	2148.0586	0.058643676	1100	Q02952	AKAP12	A-kinase anchor protein 12	yes	yes	0	0	0	2	0		1															16.9	16.9	2	1.4412999999999998E-19	9998	DP690-2	194.98	144.83			NaN	NaN	NaN	0	0	Median	1019400	1019400	0	3887	1100	3636	7687	18762;18763	18763		2	9606
EVIDKYTAVVK	2	0	Unmodified	1263.7075	0.70745338	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	1	13	0													1				13.816	13.816	2	0.00067394	7037	DP690-13	123.96	123.96			0.92558	1.0267	NaN	1	0	Median	139130000	72761000	66371000	3888	229	3637	7688	18764;18765;18766;18767	18764		4	9606
EVIDLLKPDQVEGIQK	2	0	Unmodified	1823.004	0.0040293305	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	1	10	0										1							17.897	17.897	3	0.0035502	13691	DP690-10	115.04	83.21			NaN	NaN	NaN	0	0	Median	0	0	0	3889	1570	3638	7689	18768	18768		1	9606
EVIELPLTNPELFQR	0	1	Unmodified	1796.9672	0.96724989	983	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	6	0						1											21.688	21.688	2	2.3987E-05	15947	DP690-6	168.85	146.79			0.91895	1.0532	NaN	1	0	Median	6666000	3202300	3463600	3890	983	3639	7690	18769;18770;18771;18772	18771		4	9606
EVIELPVKHPELFEALGIAQPK	2	0	Unmodified	2456.3679	0.36789699	966	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	1	5	0					1												19.993	19.993	4	0.0053274	14424	DP690-5	56.9	56.9			1.112	1.0848	NaN	1	0	Median	13376000	6060600	7315300	3891	966	3640	7691	18773;18774	18774		2	9606
EVIFMSDKYHDSDEATAAR	1	1	Oxidation (M)	2199.9743	0.97426212	644	P32321	DCTD	Deoxycytidylate deaminase	yes	yes	0	1	1	8	0								1									12.978	12.978	3	0.00012323	5828	DP690-8	105.9	77.349			1.0047	1.1682	NaN	1	0	Median	2228500	1167200	1061300	3892	644	3641	7692	18775;18776;18777;18778	18777	900	4	9606
EVLDQVER	0	1	Unmodified	986.50327	0.50327426	477	P12931	SRC	Proto-oncogene tyrosine-protein kinase Src	yes	yes	0	0	0	12	0												1					13.136	13.136	2	0.0075713	6366	DP690-12	121.99	52.813			NaN	NaN	NaN	0	0	Median	32396000	32396000	0	3893	477	3642	7693	18779	18779		1	9606
EVLDSFLDLAR	0	1	Unmodified	1276.6663	0.66631685	1349	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	11	0.816										1	1	1					22.045	22.045	2	2.2636E-06	18355	DP690-12	215.93	166.83			0.93842	1.1158	15.978	3	0	Median	106160000	52868000	53289000	3894	1349	3643	7694;7695;7696	18780;18781;18782;18783;18784;18785	18782		6	9606
EVLEGLDYLHR	0	1	Unmodified	1342.6881	0.68811492	2332	Q9UEW8	STK39	STE20/SPS1-related proline-alanine-rich protein kinase	yes	yes	0	0	0	4	0				1													17.205	17.205	3	0.0068155	11372	DP690-4	61.435	32.372			0.77551	0.90265	NaN	1	0	Median	9512100	4785400	4726700	3895	2332	3644	7697	18786	18786		1	9606
EVLEQVER	0	1	Unmodified	1000.5189	0.51892433	412	P07947;P06241	YES1;FYN	Tyrosine-protein kinase Yes;Tyrosine-protein kinase Fyn	yes	no	0	0	0	12	0												1					12.931	12.931	2	0.054095	6062	DP690-12	113.5	5.9056			0.71051	0.78488	NaN	1	0	Median	304290000	173400000	130890000	3896	412	3645	7698	18787	18787		0	9606
EVLLEAQDMAVR	0	1	Oxidation (M)	1388.697	0.69696505	2243	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	yes	yes	0	1	0	15.5	0.5															1	1	15.167	15.167	2	0.0096817	8908	DP690-16	83.499	53.832			0.61142	0.70893	17.143	2	0	Median	36590000	19502000	17088000	3897	2243	3646	7699;7700	18788;18789;18790	18790	2714	3	9606
EVLLFPAMKPEDKK	3	0	Oxidation (M)	1659.8906	0.89057948	1316	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	1	2	4	0				1													13.764	13.764	3	0.066726	6940	DP690-4	44.968	35.933			0.89008	0.9056	NaN	1	0	Median	16122000	7210500	8911600	3898	1316	3647	7701	18791	18791		1	9606
EVLLLMQALNTLSTPEEK	1	0	Oxidation (M)	2044.0762	0.076207996	2222	Q9NUQ3;Q9BZA5	TXLNG;TXLNGY	Gamma-taxilin;Putative gamma-taxilin 2	yes	no	0	1	0	12	0												1					22.563	22.563	2	2.6539E-09	19096	DP690-12	149.3	114.29			0.94811	1.1477	NaN	1	0	Median	3080500	1384400	1696100	3899	2222	3648	7702	18792;18793;18794;18795;18796	18796	2704	5	9606
EVLNEEDEVQPNGK	1	0	Unmodified	1598.7424	0.74239491	331	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	4.67	2.87			3	2							1						13.368	13.368	2	2.9485000000000004E-25	6949	DP690-11	220.1	144.44			NaN	NaN	NaN	0	0	Median	29818000	25778000	4040200	3900	331	3649	7703;7704;7705;7706;7707;7708	18797;18798;18799;18800;18801;18802;18803	18797		7	9606
EVLPALENNKEQIQK	2	0	Unmodified	1751.9418	0.94176342	2347	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	1	12	4								1								1	14.013	14.013	3	6.1261E-06	7286	DP690-16	167.73	127.98			0.83668	0.95346	0.99694	2	0	Median	44510000	22160000	22350000	3901	2347	3650	7709;7710	18804;18805;18806;18807;18808	18804		5	9606
EVLPGEIVEISR	0	1	Unmodified	1339.7347	0.73473076	1121	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	4	0				1													18.318	18.318	2	0.00020668	12692	DP690-4	121.61	121.61			0.7388	0.85507	NaN	1	0	Median	17124000	10409000	6715300	3902	1121	3651	7711	18809;18810	18809		2	9606
EVLQSLPLTEIIR	0	1	Unmodified	1509.8766	0.87664397	857	P52630	STAT2	Signal transducer and activator of transcription 2	yes	yes	0	0	0	3	0			1														21.282	21.282	2	0.054723	16664	DP690-3	87.789	36.344			NaN	NaN	NaN	0	0	Median	0	0	0	3903	857	3652	7712	18811	18811		1	9606
EVLSLLQEK	1	0	Unmodified	1057.6019	0.60192568	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											1						17.417	17.417	2	0.001252	12869	DP690-11	139.97	85.248			NaN	NaN	NaN	0	0	Median	109590000	109590000	0	3904	1504	3653	7713	18812;18813	18812		2	9606
EVLSMDDEIQK	1	0	Oxidation (M)	1321.6071	0.60714699	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	1	0	3.5	0.5			1	1													13.207	13.207	2	0.00051105	6256	DP690-3	119.68	82.122			0.80483	0.86761	11.198	2	0	Median	37910000	20575000	17334000	3905	1122	3654	7714;7715	18814;18815;18816;18817;18818;18819;18820	18815	1745	7	9606
EVLSMHQILLYLLR	0	1	Oxidation (M)	1742.9753	0.97531216	2203	Q9NRR4	DROSHA	Ribonuclease 3	yes	yes	0	1	0	10	0										1							21.012	21.012	3	0.079757	18036	DP690-10	41.996	32.438			1.0517	1.3073	NaN	1	0	Median	7240200	3241900	3998300	3906	2203	3655	7716	18821	18821		1	9606
EVMLVGIGDK	1	0	Oxidation (M)	1075.5583	0.5583463	678	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	1	0	15	0															1		15.563	15.563	2	0.0012072	9545	DP690-15	112.11	45.756			0.84048	0.95802	NaN	1	0	Median	70079000	38932000	31147000	3907	678	3656	7717	18822;18823;18824;18825;18826	18825	980	5	9606
EVMPLLLAYLK	1	0	Oxidation (M)	1304.7414	0.74139604	1728	Q8TEX9	IPO4	Importin-4	yes	yes	0	1	0	3	0			1														21.551	21.551	2	0.0030473	16958	DP690-3	99.442	60.42			NaN	NaN	NaN	0	0	Median	9057100	3752800	5304300	3908	1728	3657	7718	18827;18828;18829;18830	18827	2312	4	9606
EVMSDLEESKYQNAELR	1	1	Oxidation (M)	2055.9419	0.94189936	1083	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	1	1	3	0			1														13.954	13.954	3	7.5321E-08	7252	DP690-3	160.8	131.73			1.284	1.4241	NaN	1	0	Median	17496000	7861000	9635500	3909	1083	3658	7719	18831;18832;18833;18834	18832	1705	4	9606
EVNKFQMAYSNLLR	1	1	Oxidation (M)	1727.8665	0.86648999	687	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	1	1	16	0																2	17.045	17.045	2;3	0.0014289	11054	DP690-16	85.536	48.172			0.90187	1.0151	14.066	2	0	Median	55758000	30318000	25441000	3910	687	3659	7720;7721	18835;18836;18837;18838;18839	18836	991	5	9606
EVPAVPETLK	1	0	Unmodified	1081.6019	0.60192568	525	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	15	0															1		14.914	14.914	2	0.00023688	8652	DP690-15	126.24	54.9			0.82143	0.91776	NaN	1	0	Median	114320000	64175000	50143000	3911	525	3660	7722	18840;18841	18841		2	9606
EVPEHITEEELK	1	0	Unmodified	1451.7144	0.71438925	1525	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	14	0														1			13.518	13.518	2	0.00052044	6851	DP690-14	111.27	72.551			0.74539	0.89854	NaN	1	0	Median	27506000	13968000	13538000	3912	1525	3661	7723	18842;18843	18843		2	9606
EVPGADRYQEAEPGPLGSAVGSQR	0	2	Unmodified	2469.1884	0.18842907	69	O00192	ARVCF	Armadillo repeat protein deleted in velo-cardio-facial syndrome	yes	yes	0	0	1	11	0											1						15.245	15.245	3	0.0045536	9822	DP690-11	88.684	45.303			NaN	NaN	NaN	0	0	Median	24798000	24798000	0	3913	69	3662	7724	18844;18845	18845		2	9606
EVPQDQHLEAPADQSK	1	0	Unmodified	1790.8435	0.84350594	2470	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	15	0															1		11.459	11.459	3	0.0028583	4040	DP690-15	72.797	47.374			0.77995	0.91953	NaN	1	0	Median	11864000	5307800	6555900	3914	2470	3663	7725	18846;18847	18847		2	9606
EVPSKEEPSPVKAEVAEK	3	0	Unmodified	1952.0102	0.01023692	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	2	9	0									1								10.861	10.861	3	0.010521	3225	DP690-9	58.577	58.577			0.47386	0.52004	NaN	1	0	Median	1603900	1071500	532450	3915	763	3664	7726	18848	18848		1	9606
EVQALIAEGIALVWESYK	1	0	Unmodified	2018.0724	0.072443247	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									2								27.449	27.449	2	4.407E-06	22895	DP690-9	129.01	129.01			0.74856	0.85708	NaN	1	0	Median	912360	496460	415900	3916	1264	3665	7727;7728	18849;18850;18851	18849		3	9606
EVQDGIAPR	0	1	Unmodified	983.50361	0.50360861	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	3	0			1														11.336	11.336	2	0.00021103	3832	DP690-3	165.11	113.32			0.76452	0.81054	NaN	1	0	Median	100040000	56770000	43267000	3917	746	3666	7729	18852;18853;18854;18855	18854		4	9606
EVQDLAFLDVVSK	1	0	Unmodified	1461.7715	0.7715102	853	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	4	0				1													21.05	21.05	2	0.022333	15902	DP690-4	95.477	47.386			NaN	NaN	NaN	0	0	Median	1209700	0	1209700	3918	853	3667	7730	18856	18856		1	9606
EVQEAFLTLHK	1	0	Unmodified	1313.698	0.69795133	2064	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	4	0				1													15.503	15.503	2	0.00011063	9191	DP690-4	137.05	105.17			0.9027	0.98471	NaN	1	0	Median	19606000	9632500	9973600	3919	2064	3668	7731	18857;18858;18859;18860;18861	18858		5	9606
EVQETTVTEGAAK	1	0	Unmodified	1361.6674	0.66743906	2254	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	4	0				3													10.982	10.982	2	0.00036727	3479	DP690-4	143.5	69.126			NaN	NaN	NaN	0	0	Median	2722400	0	2722400	3920	2254	3669	7732;7733;7734	18862;18863;18864;18865;18866	18864		5	9606
EVQLAQIFEPLSR	0	1	Unmodified	1528.8249	0.82494275	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10.5	0.5										1	1						21.739	21.739	2	3.4018E-13	19057	DP690-10	289.22	263.92			0.7585	0.92011	10.119	2	0	Median	170280000	97135000	73145000	3921	1377	3670	7735;7736	18867;18868;18869;18870;18871;18872;18873;18874	18869		8	9606
EVQTNDLKEVVNK	2	0	Unmodified	1514.794	0.79403655	946	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	14.4	0.49														3	2		13.071	13.071	2;3	2.8982E-51	6229	DP690-14	285.32	216.47			0.95443	1.0654	4.3691	4	0	Median	570710000	294790000	275920000	3922	946	3671	7737;7738;7739;7740;7741	18875;18876;18877;18878;18879;18880;18881;18882;18883;18884;18885;18886;18887;18888;18889;18890;18891;18892;18893	18886		19	9606
EVSEEQPVVTLEK	1	0	Unmodified	1485.7563	0.75625407	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	3	0			1														15.016	15.016	2	7.0676E-06	8641	DP690-3	190.57	144.57			0.85674	0.91275	NaN	1	0	Median	27182000	14842000	12340000	3923	788	3672	7742	18894;18895;18896;18897	18896		4	9606
EVSQVDTICECLLEHEEQVLR	0	1	Unmodified	2585.2102	0.21015207	1738	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	11	0											1						21.263	21.263	3	0.00013759	18424	DP690-11	103.73	90.77			0.94647	1.1286	NaN	1	0	Median	40363000	21482000	18881000	3924	1738	3673	7743	18898;18899	18898		2	9606
EVSSSFDHVIK	1	0	Unmodified	1246.6194	0.61936665	2517	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	14.8	0.748														2	2	1	13.605	13.605	2;3	8.0779E-05	6855	DP690-14	140.83	56.267			0.78854	0.877	4.2993	4	0	Median	1381000000	764470000	616540000	3925	2517	3674	7744;7745;7746;7747;7748	18900;18901;18902;18903;18904;18905;18906;18907;18908;18909;18910;18911	18903		12	9606
EVTDTQMPLVAPVILPEMYK	1	0	Oxidation (M)	2289.1636	0.16364279	1908	Q96P70	IPO9	Importin-9	yes	yes	0	1	0	3	0			1														21.349	21.349	2	0.058229	16764	DP690-3	73.386	29.792			NaN	NaN	NaN	0	0	Median	1532500	1532500	0	3926	1908	3675	7749	18912	18912		1	9606
EVTEPLNLNPAK	1	0	Unmodified	1323.7034	0.70343063	1703	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	yes	yes	0	0	0	13	0													1				15.705	15.705	2	8.9268E-05	9732	DP690-13	131.62	86.863			0.64677	0.7469	NaN	1	0	Median	71113000	42756000	28357000	3927	1703	3676	7750	18913;18914	18914		2	9606
EVTLNLYDTAGQEDYDR	0	1	Unmodified	2000.8963	0.89632937	2161	Q9HBH0	RHOF	Rho-related GTP-binding protein RhoF	yes	yes	0	0	0	15	0															1		18.275	18.275	2	0.025903	13031	DP690-15	101.38	69.391			NaN	NaN	NaN	0	0	Median	0	0	0	3928	2161	3677	7751	18915	18915		1	9606
EVTPEGLQMVK	1	0	Oxidation (M)	1245.6275	0.6274885	560	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	1	0	5	0					1												13.775	13.775	2	0.010055	6648	DP690-5	86.136	57.179			1.268	1.2664	NaN	1	0	Median	30855000	18727000	12129000	3929	560	3678	7752	18916;18917;18918;18919	18918	732	4	9606
EVTSSVLPNDFFSTNPPK	1	0	Unmodified	1977.9684	0.96837211	1903	Q96NB3	ZNF830	Zinc finger protein 830	yes	yes	0	0	0	13	0													1				19.76	19.76	2	2.0934E-09	15154	DP690-13	145.29	112.43			0.70429	0.79805	NaN	1	0	Median	7550100	4341600	3208600	3930	1903	3679	7753	18920;18921	18921		2	9606
EVTTEFTVDAR	0	1	Unmodified	1266.6092	0.6091959	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	5.5	3.5		1							1								15.351	15.351	2	0.00016956	8130	DP690-2	169.65	102.16			1.3349	1.5238	11.415	2	0	Median	31455000	13828000	17627000	3931	1270	3680	7754;7755	18922;18923;18924;18925	18922		4	9606
EVVAGSHELGQDYEHVTMLQER	0	1	Oxidation (M)	2542.1758	0.17581547	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										1							15.458	15.458	3	0.00033028	10277	DP690-10	96.234	83.177			0.71961	0.89707	NaN	1	0	Median	72787000	40864000	31923000	3932	1080	3681	7756	18926;18927;18928	18927	1692	3	9606
EVVDYIIFGTVIQEVK	1	0	Unmodified	1851.003	0.002966698	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	13	0													1				23.556	23.556	2	3.7284E-09	19809	DP690-13	191.29	191.29			0.79253	0.90495	NaN	1	0	Median	10314000	6401100	3912500	3933	894	3682	7757	18929;18930;18931;18932	18932		4	9606
EVVHTVSLHEIDVINSR	0	1	Unmodified	1946.0221	0.022139011	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	13	0													1				15.88	15.88	3	0.006464	10095	DP690-13	65.949	56.388			0.69523	0.83221	NaN	1	0	Median	94659000	53454000	41206000	3934	2427	3683	7758	18933	18933		1	9606
EVVKPVPITSPAVSK	2	0	Unmodified	1549.9079	0.9079441	1869	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	1	12	0												1					13.474	13.474	3	0.023408	6874	DP690-12	55.782	31.357			0.65876	0.74983	NaN	1	0	Median	82346000	51328000	31017000	3935	1869	3684	7759	18934;18935	18935		2	9606
EVVNAIIESGK	1	0	Unmodified	1157.6292	0.62920306	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	0	8	3.56					1	1							1				15.28	15.28	2	7.7006E-05	9147	DP690-13	128.28	71.365			0.94636	1.0914	NaN	1	0	Median	234510000	58821000	175680000	3936	2208	3685	7760;7761;7762	18936;18937;18938;18939;18940;18941	18936		6	9606
EVVNKDVLDVYIEHR	1	1	Unmodified	1826.9527	0.95266246	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	1	7	4			1								1						16.494	16.494	3	8.1565E-05	11641	DP690-11	117.48	67.405			0.77884	0.88218	NaN	1	0	Median	166870000	88701000	78171000	3937	653	3686	7763;7764	18942;18943;18944;18945	18943		4	9606
EVVTEHLINK	1	0	Unmodified	1180.6452	0.64518747	1229	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	3	0			1														12.681	12.681	2	4.4165E-05	5511	DP690-3	172.25	119.08			1.0794	1.159	NaN	1	0	Median	16303000	6853600	9449400	3938	1229	3687	7765	18946;18947	18946		2	9606
EVWALVQAGIR	0	1	Unmodified	1240.6928	0.69280637	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															19.657	19.657	2	0.00052142	13217	DP690-2	112.84	80.091			108.02	111.76	NaN	1	0	Median	273300000	2140100	271160000	3939	789	3688	7766	18948;18949	18948		2	9606
EVWNTYELDLVNYQNK	1	0	Unmodified	2026.9636	0.96362108	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								20.488	20.488	2	6.1056E-06	15469	DP690-9	158.42	126.94			NaN	NaN	NaN	0	0	Median	2917400	2917400	0	3940	1264	3689	7767	18950;18951;18952	18951		3	9606
EVYAAAAEVLGLILR	0	1	Unmodified	1586.9032	0.90319307	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.25	0.433									3	1							26.109	26.109	2	7.3454E-17	21763	DP690-9	272.94	272.94			0.84535	1.0554	4.3862	3	0	Plateau	25718000	14224000	11494000	3941	1046	3690	7768;7769;7770;7771	18953;18954;18955;18956;18957;18958;18959;18960;18961;18962;18963;18964	18963		12	9606
EVYEEAGVK	1	0	Unmodified	1022.492	0.49204087	1701	Q8NFP7;A0A024RBG1;Q9NZJ9	NUDT10;NUDT4	Diphosphoinositol polyphosphate phosphohydrolase 3-alpha;Diphosphoinositol polyphosphate phosphohydrolase 2	no	no	0	0	0	8	0								1									11.578	11.578	2	0.00015417	4234	DP690-8	169.06	110.46			0.8389	0.96519	NaN	1	0	Median	6158100	3254000	2904200	3942	1701	3691	7772	18965;18966;18967	18965		3	9606
EVYEGEVTELTPCETENPMGGYGK	1	0	Oxidation (M)	2704.152	0.15202807	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	1	0	13	0													2				17.164	17.164	2	1.7188E-20	11780	DP690-13	178.67	160.96			NaN	NaN	NaN	0	0	Median	8766500	0	8766500	3943	2431	3692	7773;7774	18968;18969	18968	2868	2	9606
EVYQQQQYGSGGR	0	1	Unmodified	1498.6801	0.68006943	1954	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	12.8	3.96						1								1	1	1	11.183	11.183	2	3.742E-05	3702	DP690-6	123.51	89.307			0.93282	1.0742	9.8225	4	0	Median	259180000	133010000	126170000	3944	1954	3693	7775;7776;7777;7778	18970;18971;18972;18973;18974;18975;18976;18977;18978;18979;18980;18981;18982;18983;18984;18985	18985		16	9606
EWGSGSDTLR	0	1	Unmodified	1106.4993	0.49925152	506	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	11	0											1						13.957	13.957	2	0.050649	7934	DP690-11	64.04	37.347			0.73888	0.89097	NaN	1	0	Median	86473000	47631000	38842000	3945	506	3694	7779	18986	18986		1	9606
EWIEGVTGR	0	1	Unmodified	1045.5193	0.51925868	845	P51911	CNN1	Calponin-1	yes	yes	0	0	0	14	0														1			15.972	15.972	2	0.017214	10225	DP690-14	82.279	28.504			0.65549	0.79487	NaN	1	0	Median	27369000	14899000	12470000	3946	845	3695	7780	18987;18988	18987		2	9606
EWTDGLFTHVLR	0	1	Unmodified	1472.7412	0.74121312	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								19.628	19.628	3	6.9058E-05	14413	DP690-9	136.96	110.83			1.0922	1.2341	7.2285	2	0	Median	18572000	8798500	9773600	3947	1264	3696	7781;7782	18989;18990;18991;18992;18993;18994	18992		6	9606
EYAQVFR	0	1	Unmodified	911.45012	0.45011648	657;590	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	11	0											1						14.12	14.12	2	0.060486	8115	DP690-11	103.29	66.192			NaN	NaN	NaN	0	0	Median	41211000	41211000	0	3948	657;590	3697	7783	18995	18995		1	9606
EYEAQQQYR	0	1	Unmodified	1213.5364	0.53636531	2225	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	3	0			2														10.816	10.816	2	0.011313	3178	DP690-3	143.85	107.41			NaN	NaN	NaN	0	0	Median	0	0	0	3949	2225	3698	7784;7785	18996;18997	18996		2	9606
EYEIPSNLTPADVFFR	0	1	Unmodified	1896.9258	0.92577901	1738	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	11	0											1						22.433	22.433	2	5.4551E-07	19824	DP690-11	155.86	133.54			NaN	NaN	NaN	0	0	Median	18436000	12373000	6063500	3950	1738	3699	7786	18998;18999;19000;19001;19002	18999		5	9606
EYEMPLYRK	1	1	Oxidation (M)	1243.5907	0.59070906	2063	Q9C091	GREB1L	GREB1-like protein	yes	yes	0	1	1	9	0									1								13.682	13.682	2	0.017818	6742	DP690-9	104.37	53.173			NaN	NaN	NaN	0	0	Median	0	0	0	3951	2063	3700	7787	19003	19003	2584	1	9606
EYFSWEGAFQHVGK	1	0	Unmodified	1683.7682	0.76815616	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	10.6	3.2					1				1				3				18.834	18.834	2;3	1.9603E-15	13948	DP690-13	261.35	242.39			0.93542	1.0251	23.531	4	0	Median	824270000	417670000	406600000	3952	598	3701	7788;7789;7790;7791;7792	19004;19005;19006;19007;19008;19009;19010;19011;19012;19013;19014;19015;19016	19009		13	9606
EYGCGPSGQVVSR	0	1	Unmodified	1394.6249	0.62486274	1579	Q86VY4	TSPYL5	Testis-specific Y-encoded-like protein 5	yes	yes	0	0	0	9	4					1								1				12.14	12.14	2	0.00019583	4841	DP690-13	157.97	131.46			0.80184	0.90999	41.269	2	0	Median	42141000	22140000	20001000	3953	1579	3702	7793;7794	19017;19018;19019;19020	19017		4	9606
EYGSCSHHYQQLLQSLEQGAQEESR	0	1	Unmodified	2963.3104	0.31041147	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.86	0.639									2	4	1						18.281	18.281	3;4	3.3324E-20	14209	DP690-10	191.65	191.65			0.70752	0.82258	17.208	4	0	Linear	524460000	304360000	220100000	3954	1319	3703	7795;7796;7797;7798;7799;7800;7801	19021;19022;19023;19024;19025;19026;19027;19028;19029;19030;19031;19032	19024		11	9606
EYIEIITSSIK	1	0	Unmodified	1294.702	0.70203365	1740	Q8WUW1	BRK1	Protein BRICK1	yes	yes	0	0	0	16	0																1	19.176	19.176	2	0.0013454	13767	DP690-16	103.7	78.824			0.92639	1.0845	NaN	1	0	Median	6863100	3699800	3163300	3955	1740	3704	7802	19033;19034	19034		2	9606
EYIEIITSSIKK	2	0	Unmodified	1422.797	0.79699667	1740	Q8WUW1	BRK1	Protein BRICK1	yes	yes	0	0	1	16	0																1	16.988	16.988	2	0.00048361	11096	DP690-16	142	105.61			0.86292	0.98653	NaN	1	0	Median	14024000	7508200	6516300	3956	1740	3705	7803	19035;19036;19037	19037		3	9606
EYINECDSDYHEER	0	1	Unmodified	1857.7112	0.71117114	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	2	0		1															12.539	12.539	3	0.0021965	4828	DP690-2	77.204	77.204			1.2225	1.2795	NaN	1	0	Median	6865000	3339900	3525100	3957	1803	3706	7804	19038;19039	19038		2	9606
EYIPGQPPLSQSSDSSPTR	0	1	Unmodified	2044.9702	0.97016302	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	4	3.46		3								1							15.335	15.335	2	2.8558E-08	10000	DP690-10	159.12	114.3			NaN	NaN	NaN	0	0	Median	23622000	23622000	0	3958	408	3707	7805;7806;7807;7808	19040;19041;19042;19043;19044;19045	19041		6	9606
EYLDNVQLGHILER	0	1	Unmodified	1697.8737	0.87368386	606	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	10.5	1.5									1			1					18.437	18.437	3	2.1351E-05	13840	DP690-12	140.27	105.16			0.84024	1.0184	3.855	2	0	Median	99857000	56969000	42888000	3959	606	3708	7809;7810	19046;19047;19048;19049;19050	19049		5	9606
EYLTSHLEIR	0	1	Unmodified	1259.651	0.65100113	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	5.67	3.77			2								1						15.098	15.098	2;3	0.001936	8758	DP690-3	102.62	73.925			0.81691	0.92333	2.9009	2	0	Median	93683000	29850000	63833000	3960	2437	3709	7811;7812;7813	19051;19052;19053;19054;19055	19052		5	9606
EYNEDEDPAAR	0	1	Unmodified	1307.5266	0.52658848	1180	Q13123	IK	Protein Red	yes	yes	0	0	0	11	0											1						11.416	11.416	2	0.00011212	4146	DP690-11	125.97	112.59			0.81405	0.97184	NaN	1	0	Median	32949000	17728000	15220000	3961	1180	3710	7814	19056;19057;19058	19058		3	9606
EYNEFAEVFLK	1	0	Unmodified	1387.666	0.66598249	320	O95373	IPO7	Importin-7	yes	yes	0	0	0	3	0			1														20.842	20.842	2	0.00030613	16161	DP690-3	119.75	93.631			1.3017	1.3788	NaN	1	0	Median	10145000	4575800	5569600	3962	320	3711	7815	19059;19060;19061;19062	19060		4	9606
EYPFILDAFQR	0	1	Unmodified	1397.698	0.69795133	726	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	11	0											1						22.209	22.209	2	0.019979	19403	DP690-11	72.643	52.856			0.80487	0.97706	NaN	1	0	Median	19986000	11966000	8020200	3963	726	3712	7816	19063;19064;19065	19063		3	9606
EYQAGDFEAAER	0	1	Unmodified	1384.5895	0.58952309	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	8.33	3.77			1								2						14.42	14.42	2	0.0015582	7877	DP690-3	99.522	59.477			0.7917	0.90117	NaN	1	0	Median	12097000	6609900	5487500	3964	149	3713	7817;7818;7819	19066;19067;19068;19069;19070;19071	19068		6	9606
EYQDAFLFNELKGETMDTS	1	0	Oxidation (M)	2252.9783	0.97834444	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	1	1	13	0													1				21.045	21.045	2	1.3176E-05	16773	DP690-13	134.06	124.26			0.8806	1.0063	NaN	1	0	Median	10663000	6316800	4346500	3965	2427	3714	7820	19072;19073	19072	2864	2	9606
EYQDLLNVK	1	0	Unmodified	1120.5764	0.57643921	424	P08670;P17661;Q16352;P07196;P07197;P12036	VIM;DES;INA;NEFL;NEFM;NEFH	Vimentin;Desmin;Alpha-internexin;Neurofilament light polypeptide;Neurofilament medium polypeptide;Neurofilament heavy polypeptide	yes	no	0	0	0	12.3	3.94				1								1	1	1	1	1	16.724	16.724	2	0.0006861	11128	DP690-13	140.98	97.215			0.89071	0.97231	25.287	6	0	Median	3157299999.9999995	1615199999.9999998	1542099999.9999998	3966	424	3715	7821;7822;7823;7824;7825;7826	19074;19075;19076;19077;19078;19079;19080;19081;19082;19083;19084;19085;19086;19087;19088;19089;19090;19091	19078		18	9606
EYQISAGDFPEVK	1	0	Unmodified	1481.7038	0.70382456	2099	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	0	0	12	0												1					17.817	17.817	2	0.018743	12896	DP690-12	71.221	46.43			1.1741	1.4115	NaN	1	0	Median	20525000	8958600	11567000	3967	2099	3716	7827	19092;19093	19092		2	9606
EYQLNDSAAYYLNDLER	0	1	Unmodified	2075.9436	0.94361392	377	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	0	14	0														1			20.647	20.647	2	5.7921E-06	16398	DP690-14	128.54	111.48			1.0904	1.3222	NaN	1	0	Median	32263000	14692000	17572000	3968	377	3717	7828	19094	19094		1	9606
EYQLNDSASYYLNDLDR	0	1	Unmodified	2077.9229	0.92287848	426	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	14	0														2			20.004	20.004	2	1.4451E-05	15647	DP690-14	175.74	153.67			NaN	NaN	NaN	0	0	Median	0	0	0	3969	426	3718	7829;7830	19095;19096	19096		2	9606
EYQTQLIQR	0	1	Unmodified	1177.6091	0.60913632	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								13.717	13.717	2	0.00082243	6771	DP690-9	131.06	80.455			0.84254	0.98969	NaN	1	0	Median	52356000	27818000	24538000	3970	1264	3719	7831	19097;19098;19099;19100	19100		4	9606
EYRDLTTAGAVTQCYR	0	2	Unmodified	1902.8894	0.88941028	1095	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	1	15	0															1		14.554	14.554	3	0.056616	8200	DP690-15	74.338	34.943			NaN	NaN	NaN	0	0	Median	11539000	0	11539000	3971	1095	3720	7832	19101	19101		1	9606
EYSIGTGSTK	1	0	Unmodified	1041.4979	0.49785453	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	12	0												1					11.744	11.744	2	0.031519	4486	DP690-12	70.399	53.859			0.96346	1.1478	NaN	1	0	Median	45049000	23643000	21406000	3972	538	3721	7833	19102	19102		1	9606
EYSSELNAPSQESDSHPR	0	1	Unmodified	2031.877	0.87699092	803	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	10.6	0.8									1		4						12.231	12.231	2;3	1.482E-22	5288	DP690-11	240.42	210.11			0.70921	0.84557	15.13	4	0	Median	220750000	131440000	89317000	3973	803	3722	7834;7835;7836;7837;7838	19103;19104;19105;19106;19107;19108;19109;19110;19111;19112	19108		10	9606
EYSTIYGDKIAGGR	1	1	Unmodified	1528.7522	0.75217174	2566				yes	yes	0	0	1	7	0							1										19.112	19.112	2	0.015131	13425	DP690-7	85.29	85.29	+		0.049636	0.052315	NaN	1	0	Median	376920000	360060000	16858000	3974	2566	3723	7839	19113	19113		1	9606
EYSVEAEER	0	1	Unmodified	1110.4829	0.48293275	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	13	0													1				12.116	12.116	2	0.0091229	4762	DP690-13	115.49	75.427			NaN	NaN	NaN	0	0	Median	74440000	74440000	0	3975	1597	3724	7840	19114;19115	19115		2	9606
EYTACELMNIYK	1	0	Oxidation (M)	1549.6793	0.67926607	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	1	0	8	4				1								1					17.083	17.083	2	0.00059878	11858	DP690-12	116.52	77.95			0.93478	1.0282	15.794	2	0	Median	239610000	134530000	105080000	3976	2210	3725	7841;7842	19116;19117;19118;19119;19120;19121;19122;19123	19116	2687	8	9606
EYTACELMNIYK	1	0	Unmodified	1533.6844	0.68435145	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	12	0												1					19.316	19.316	2	0.00041144	14873	DP690-12	114.86	80.772			0.96482	1.1065	NaN	1	0	Median	130720000	66956000	63762000	3977	2210	3725	7843	19124;19125;19126;19127	19124		4	9606
EYTDVYPEIIER	0	1	Unmodified	1525.73	0.73003931	2405	Q9UNF1;Q9Y5V3	MAGED2;MAGED1	Melanoma-associated antigen D2;Melanoma-associated antigen D1	yes	no	0	0	0	4	0				3													18.182	18.182	2	0.002976	12643	DP690-4	121.6	83.887			NaN	NaN	NaN	0	0	Median	21125000	21125000	0	3978	2405	3726	7844;7845;7846	19128;19129;19130;19131	19131		4	9606
EYTEENIQLVADGCCNLQK	1	0	Unmodified	2283.0147	0.014746726	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											1						17.65	17.65	2	0.00086506	13317	DP690-11	91.62	62.831			0.89245	1.0768	NaN	1	0	Median	50473000	27602000	22871000	3979	1504	3727	7847	19132;19133	19133		2	9606
EYTINIHK	1	0	Unmodified	1016.5291	0.52909508	1003	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	16	0																2	12.48	12.48	2	0.00042988	5251	DP690-16	143.11	76.114			0.86597	0.91369	NaN	1	0	Median	334670000	133820000	200850000	3980	1003	3728	7848;7849	19134;19135	19134		1	9606
EYVDPNNIFGNR	0	1	Unmodified	1436.6684	0.66844211	61	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	12	0												1					18.124	18.124	2	0.0021203	13402	DP690-12	93.598	64.8			0.65211	0.7751	NaN	1	0	Median	62942000	36052000	26890000	3981	61	3729	7850	19136;19137;19138;19139	19138		4	9606
EYVESQLQR	0	1	Unmodified	1150.5619	0.56185177	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	6.33	2.98					5								1				13.042	13.042	2	0.00071576	5600	DP690-5	138.83	103.53			1.5365	1.5939	10.754	2	0	Median	203350000	91356000	111990000	3982	1675	3730	7851;7852;7853;7854;7855;7856	19140;19141;19142;19143;19144;19145;19146;19147	19143		7	9606
EYVNASEVSSGKPVSAR	1	1	Unmodified	1778.8799	0.87989145	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	1	11	0											2						12.594	12.594	2;3	1.6376E-17	5838	DP690-11	231.52	193.92			0.74106	0.86419	9.0007	2	0	Median	343120000	200870000	142250000	3983	144	3731	7857;7858	19148;19149;19150;19151;19152;19153;19154	19153		7	9606
EYVNSTSEESHDEDEIRPVQQQDLHR	0	2	Unmodified	3139.4079	0.40787691	1677	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	1	14	0														1			13.206	13.206	4	0.00013339	6386	DP690-14	83.167	77.68			0.71767	0.84339	NaN	1	0	Median	93260000	54886000	38373000	3984	1677	3732	7859	19155;19156;19157;19158;19159	19158		5	9606
FAAATGATPIAGR	0	1	Unmodified	1202.6408	0.6407708	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	0	12	4.32						1								1		1	13.444	13.444	2	1.1095E-10	6614	DP690-14	223.36	197.56			0.89204	0.98157	23.523	3	0	Median	2406400000	1283000000	1123300000	3985	428	3733	7860;7861;7862	19160;19161;19162;19163;19164;19165;19166;19167;19168;19169;19170;19171	19162		12	9606
FAADIISVLAMTMSGER	0	1	2 Oxidation (M)	1842.8856	0.88557045	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	2	0	3	0			1														22.093	22.093	2	0.0007272	17602	DP690-3	103.97	86.236			1.3643	1.5189	NaN	1	0	Median	6101900	2396600	3705300	3986	1190	3734	7863	19172;19173;19174	19172	1839;1840	3	9606
FAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLK	2	0	Unmodified	3574.8671	0.8671485	955	P61960	UFM1	Ubiquitin-fold modifier 1	yes	yes	0	0	1	16	0																1	21.96	21.96	3	2.9123E-09	16849	DP690-16	113.15	98.616			0.77336	0.87737	NaN	1	0	Median	3374500	1828400	1546100	3987	955	3735	7864	19175;19176;19177;19178;19179;19180;19181	19179		7	9606
FAAGHDAEGSHSHVHFDEK	1	0	Unmodified	2076.9038	0.90381479	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	6.2	2.78	2	1		2	35	20	3	2	2				3	2	2		15.169	15.169	2;3;4;5	9.8229E-60	2678	DP690-5	348.58	287.55			62.933	62.404	31.238	25	0	Median	233580000000	3422499999.9999995	230150000000	3988	2071	3736	7865;7866;7867;7868;7869;7870;7871;7872;7873;7874;7875;7876;7877;7878;7879;7880;7881;7882;7883;7884;7885;7886;7887;7888;7889;7890;7891;7892;7893;7894;7895;7896;7897;7898;7899;7900;7901;7902;7903;7904;7905;7906;7907;7908;7909;7910;7911;7912;7913;7914;7915;7916;7917;7918;7919;7920;7921;7922;7923;7924;7925;7926;7927;7928;7929;7930;7931;7932;7933;7934;7935;7936;7937;7938	19182;19183;19184;19185;19186;19187;19188;19189;19190;19191;19192;19193;19194;19195;19196;19197;19198;19199;19200;19201;19202;19203;19204;19205;19206;19207;19208;19209;19210;19211;19212;19213;19214;19215;19216;19217;19218;19219;19220;19221;19222;19223;19224;19225;19226;19227;19228;19229;19230;19231;19232;19233;19234;19235;19236;19237;19238;19239;19240;19241;19242;19243;19244;19245;19246;19247;19248;19249;19250;19251;19252;19253;19254;19255;19256;19257;19258;19259;19260;19261;19262;19263;19264;19265;19266;19267;19268;19269;19270;19271;19272;19273;19274;19275;19276;19277;19278;19279;19280;19281;19282;19283;19284;19285;19286;19287;19288;19289;19290;19291;19292;19293;19294;19295;19296;19297;19298;19299;19300;19301;19302;19303;19304;19305;19306;19307;19308;19309;19310;19311;19312;19313;19314;19315;19316;19317;19318;19319;19320	19209		139	9606
FAAGHDAEGSHSHVHFDEKLHDSVVMVTQESDSSFLVK	2	0	Oxidation (M)	4194.9341	0.93413522	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	1	1	5	0					1												16.47	16.47	7	0.0060003	9844	DP690-5	53.094	36.715			NaN	NaN	NaN	0	0	Median	128990000	0	128990000	3989	2071	3737	7939	19321	19321	2590	1	9606
FAAGHDAEGSHSHVHFDEKLHDSVVMVTQESDSSFLVK	2	0	Unmodified	4178.9392	0.9392206	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	1	5	0					3												23.008	23.008	6;7	3.2295E-07	10680	DP690-5	81.844	63.822			NaN	NaN	NaN	0	0	Median	276380000	0	276380000	3990	2071	3737	7940;7941;7942	19322;19323;19324;19325;19326	19325		5	9606
FAALDNEEEDKEEEIIKEK	3	0	Unmodified	2278.0853	0.085252357	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	2	11	0											1						15.496	15.496	4	0.017106	10079	DP690-11	59.345	59.345			0.87408	0.94677	NaN	1	0	Median	68942000	36966000	31976000	3991	1687	3738	7943	19327	19327		1	9606
FAAQNLHQNLIR	0	1	Unmodified	1423.7684	0.76843093	2087	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	13	0													2				13.971	13.971	2;3	8.0712E-06	7326	DP690-13	172.25	125.79			0.92103	1.0755	14.685	2	0	Median	411070000	215630000	195440000	3992	2087	3739	7944;7945	19328;19329;19330;19331;19332;19333;19334;19335	19333		8	9606
FAASGGFLHHMAGLSSSK	1	0	Oxidation (M)	1819.8676	0.86755262	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	1	0	13	0													1				12.966	12.966	4	0.00027668	5945	DP690-13	90.453	74.609			0.89138	1.0018	NaN	1	0	Median	159880000	81117000	78762000	3993	2045	3740	7946	19336;19337;19338;19339	19337	2567	4	9606
FAASGGFLHHMAGLSSSK	1	0	Unmodified	1803.8726	0.872638	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	13	0													1				15.095	15.095	3	5.6606E-05	8983	DP690-13	116.06	97.67			0.76254	0.8788	NaN	1	0	Median	83323000	46498000	36825000	3994	2045	3740	7947	19340;19341;19342;19343	19342		4	9606
FAASNPCGNIQR	0	1	Unmodified	1333.6197	0.61971778	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								12.577	12.577	2	8.7003E-05	5285	DP690-9	131.44	74.71			0.77819	0.97186	NaN	1	0	Median	12899000	7408500	5490600	3995	2217	3741	7948	19344;19345;19346;19347	19345		4	9606
FAATTVEEILAK	1	0	Unmodified	1291.7024	0.702368	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										1							19.535	19.535	2	0.00034974	16116	DP690-10	153.97	108.6			0.77503	0.95686	NaN	1	0	Median	123760000	70590000	53169000	3996	2065	3742	7949	19348;19349;19350	19348		3	9606
FACHSASLTVR	0	1	Unmodified	1247.6081	0.60809046	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	13	1.22												2	1		1		11.685	11.685	2;3	9.3026E-07	4311	DP690-12	190.57	160.01			0.78869	1.0504	11.663	4	0	Linear	698420000	377900000	320520000	3997	1322	3743	7950;7951;7952;7953	19351;19352;19353;19354;19355;19356;19357;19358;19359;19360;19361;19362;19363;19364;19365;19366;19367	19354		17	9606
FADEHVPGSPFTVK	1	0	Unmodified	1529.7514	0.75144346	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										3							15.563	15.563	3	0.00034447	10391	DP690-10	91.307	71.071			0.72976	0.82553	NaN	1	0	Median	478570000	219780000	258790000	3998	250	3744	7954;7955;7956	19368;19369;19370;19371;19372	19369		5	9606
FADKHVPGSPFTVK	2	0	Unmodified	1528.8038	0.80381338	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	10	0										1							13.278	13.278	3	0.015039	7009	DP690-10	60.937	27.185			0.67025	0.8089	NaN	1	0	Median	124650000	72249000	52402000	3999	1270	3745	7957	19373;19374	19374		2	9606
FADLSEAANR	0	1	Unmodified	1092.52	0.51998696	424	P08670	VIM	Vimentin	yes	yes	0	0	0	13	2.45									1			1	1		1	1	13.947	13.947	2	2.8861E-05	7331	DP690-15	185.55	115.02			0.81824	0.87653	18.91	5	0	Median	4480900000	2419900000	2060999999.9999998	4000	424	3746	7958;7959;7960;7961;7962	19375;19376;19377;19378;19379;19380;19381;19382;19383;19384;19385;19386;19387;19388;19389;19390;19391;19392;19393;19394	19385		20	9606
FADQHVPGSPFSVK	1	0	Unmodified	1514.7518	0.75177781	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.67	0.471									1	2							15.027	15.027	2;3	0.0003938	9511	DP690-10	98.676	76.355			0.67863	0.77165	4.9316	2	0	Median	898650000	525260000	373390000	4001	549	3747	7963;7964;7965	19395;19396;19397;19398;19399;19400;19401;19402;19403	19397		9	9606
FAEAFEAIPR	0	1	Unmodified	1149.5819	0.58185893	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	8	4				1								1					17.551	17.551	2	0.00016724	12578	DP690-12	132.76	80.503			1.0127	1.1638	40.12	2	0	Median	83041000	40533000	42509000	4002	826	3748	7966;7967	19404;19405;19406;19407;19408;19409	19404		6	9606
FAEFLLPLLIEK	1	0	Unmodified	1431.8377	0.83773927	1931	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	5.67	3.77			2								1						24.736	24.736	2	4.9501E-05	20328	DP690-3	133.91	93.975			1.2928	1.358	25.958	3	0	Median	9986400	4653500	5332900	4003	1931	3749	7968;7969;7970	19410;19411;19412;19413;19414;19415;19416;19417;19418;19419	19413		10	9606
FAEVECLAESHQHLSK	1	0	Unmodified	1883.8836	0.88359662	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	10	0										3							13.747	13.747	3;4	1.612E-06	7648	DP690-10	134.81	91.989			0.93138	1.1289	10.024	2	0	Median	360710000	172320000	188390000	4004	1297	3750	7971;7972;7973	19420;19421;19422;19423;19424;19425	19421		6	9606
FAEVTQEVEVARPVDK	1	1	Unmodified	1815.9367	0.93667805	1092	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	1	11	0											1						14.799	14.799	3	3.0187E-06	9101	DP690-11	131.86	110.05			0.88423	1.0011	NaN	1	0	Median	158440000	93663000	64776000	4005	1092	3751	7974	19426	19426		1	9606
FAEVYFAQSQQK	1	0	Unmodified	1444.6987	0.69867961	1255	Q14165	MLEC	Malectin	yes	yes	0	0	0	15	0															1		16.071	16.071	2	8.1106E-05	10144	DP690-15	125.75	81.977			0.92417	1.0895	NaN	1	0	Median	14622000	7609900	7012100	4006	1255	3752	7975	19427;19428;19429	19429		3	9606
FAFPLSLFQGSSDGVEVR	0	1	Unmodified	1954.9789	0.97887721	1184	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	11	0											1						23.657	23.657	2	0.050209	21401	DP690-11	54.276	30.807			0.75936	0.91557	NaN	1	0	Median	3673900	2191100	1482700	4007	1184	3753	7976	19430	19430		1	9606
FAFQAEVNR	0	1	Unmodified	1080.5352	0.53524309	490	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	3	0			1														15.463	15.463	2	0.016237	9274	DP690-3	83.265	56.127			1.0692	1.2347	NaN	1	0	Median	19680000	8498700	11181000	4008	490	3754	7977	19431	19431		1	9606
FAGDKGYLTK	2	0	Unmodified	1098.571	0.5709599	930	P60903	S100A10	Protein S100-A10	yes	yes	0	0	1	11.2	3.92								3								2	11.566	11.566	2;3	0.00024899	4161	DP690-16	167.12	89.805			0.81492	0.91351	4.4367	3	0	Median	294090000	161630000	132450000	4009	930	3755	7978;7979;7980;7981;7982	19432;19433;19434;19435;19436;19437;19438;19439;19440;19441;19442;19443;19444	19437		13	9606
FAGGDYTTTIEAFISASGR	0	1	Unmodified	1962.9323	0.93232095	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	10	0										2							23.251	23.251	2	7.7915E-18	21025	DP690-10	211.83	182.02			0.66797	0.83424	NaN	1	0	Median	17042000	8560600	8481300	4010	408	3756	7983;7984	19445;19446;19447;19448;19449	19446		5	9606
FAGIDGTSTYTSGDQK	1	0	Unmodified	1646.7424	0.74239491	953	P61812	TGFB2	Transforming growth factor beta-2;Latency-associated peptide	yes	yes	0	0	0	13	0													1				15.173	15.173	2	5.1616E-12	8971	DP690-13	196.27	171.2			0.76936	0.8919	NaN	1	0	Median	39518000	21255000	18263000	4011	953	3757	7985	19450;19451;19452;19453	19450		4	9606
FAGQMGIQLFETSAK	1	0	Oxidation (M)	1642.8025	0.80249275	1323	Q15286	RAB35	Ras-related protein Rab-35	yes	yes	0	1	0	15	0															1		18.386	18.386	2	0.0027876	13143	DP690-15	91.123	75.736			0.83312	0.97544	NaN	1	0	Median	7297000	3483400	3813600	4012	1323	3758	7986	19454;19455;19456;19457	19455	2048	4	9606
FAHIDGDHLTLLNVYHAFK	1	0	Unmodified	2210.1273	0.12727278	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	5.67	3.77			2								1						18.513	18.513	4;5	6.9624E-07	13227	DP690-3	134.14	134.14			1.0803	1.1593	9.9433	3	0	Median	113610000	57522000	56091000	4013	161	3759	7987;7988;7989	19458;19459;19460;19461;19462	19459		5	9606
FAIGSQVSEHSIIK	1	0	Unmodified	1514.8093	0.80929269	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	5.8	3.49			3						1		1						15.465	15.465	3	0.00010623	10102	DP690-11	111.31	86.119			0.79424	0.93176	5.0069	2	0	Median	418430000	213820000	204610000	4014	652	3760	7990;7991;7992;7993;7994	19463;19464;19465;19466;19467;19468;19469;19470;19471;19472	19463		10	9606
FAIGSQVSEHSIIKDFTK	2	0	Unmodified	2006.0473	0.047291129	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	11	0											2						17.437	17.437	3;4	0.00018439	12974	DP690-11	98.508	77.569			0.77731	0.86919	0.34125	2	0	Median	472600000	264600000	208000000	4015	652	3761	7995;7996	19473;19474;19475;19476	19475		4	9606
FAIQDISVEETSAK	1	0	Unmodified	1536.7672	0.7671531	476;186	P12814;P35609;Q08043;O43707	ACTN1;ACTN2;ACTN3;ACTN4	Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-4	no	no	0	0	0	10.2	3.39			1								4			1			17.803	17.803	2	7.6274E-09	13482	DP690-11	202.65	71.536			0.78999	0.88079	35.912	2	0	Median	62682000	29495000	33187000	4016	476;186	3762	7997;7998;7999;8000;8001;8002	19477;19478;19479;19480;19481;19482;19483	19477		7	9606
FALACNASDKIIEPIQSR	1	1	Unmodified	2032.0412	0.041159893	663	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	1	14	0														1			16.827	16.827	3	9.0733E-05	11447	DP690-14	120.9	104.18			0.89186	1.0793	NaN	1	0	Median	67680000	38555000	29125000	4017	663	3763	8003	19484	19484		1	9606
FALCQPLLLFSSLQHGYSLAR	0	1	Unmodified	2420.2675	0.26747144	2391	Q9ULP9	TBC1D24	TBC1 domain family member 24	yes	yes	0	0	0	12	0												1					23.152	23.152	3	2.2799E-07	19664	DP690-12	141.64	129.57			0.93294	1.137	NaN	1	0	Median	8346700	4187600	4159100	4018	2391	3764	8004	19485;19486	19485		2	9606
FALEVPGLR	0	1	Unmodified	1000.5706	0.57056597	2254	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	4	0				1													19.445	19.445	2	0.005495	14114	DP690-4	97.798	55.511			0.83573	0.96547	NaN	1	0	Median	3218600	1852300	1366300	4019	2254	3765	8005	19487;19488;19489	19488		3	9606
FALGIFAINEAVESGDVGK	1	0	Unmodified	1935.9942	0.99419293	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	6	4		1								1							22.949	22.949	2	2.4848E-05	16645	DP690-2	142.57	99.771			NaN	NaN	NaN	0	0	Median	592110	0	592110	4020	766	3766	8006;8007	19490;19491	19491		2	9606
FALGLSGGSLVSMLAR	0	1	Oxidation (M)	1593.8549	0.85486267	315	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	1	0	7	0							1										21.093	21.093	2	0.0061833	15785	DP690-7	78.324	59.793			0.94836	1.0901	NaN	1	0	Median	7278300	4146200	3132000	4021	315	3767	8008	19492;19493;19494;19495	19492	325	4	9606
FALPQYLK	1	0	Unmodified	978.55385	0.55385327	33	CON__P02663			yes	yes	0	0	0	4.5	2.63	1	1	1			1	1	1									18.234	18.234	2	0.0043349	9643	DP690-1	126.24	67.639		+	NaN	NaN	NaN	0	0	Median	665710000	665710000	0	4022	33	3768	8009;8010;8011;8012;8013;8014	19496;19497;19498;19499;19500;19501;19502;19503;19504;19505;19506	19496		11	
FAMKEMGTPDVR	1	1	2 Oxidation (M)	1412.6428	0.64282099	1003	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	2	1	16	0																1	10.451	10.451	3	0.0059944	2940	DP690-16	70.728	55.852			0.90031	0.96833	NaN	1	0	Median	65178000	34547000	30631000	4023	1003	3769	8015	19507;19508	19508	1523;1524	2	9606
FANSCDSVYSACTDGTVK	1	0	Unmodified	1980.8193	0.81934138	1853	Q96FK6	WDR89	WD repeat-containing protein 89	yes	yes	0	0	0	13	0													1				14.469	14.469	2	0.0017319	8037	DP690-13	117.48	83.613			NaN	NaN	NaN	0	0	Median	9090200	0	9090200	4024	1853	3770	8016	19509	19509		1	9606
FANSLVGVQQQLQAFNTYR	0	1	Unmodified	2183.1124	0.112351	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							21.143	21.143	2	6.2606E-39	18276	DP690-10	253.06	137.03			NaN	NaN	NaN	0	0	Median	0	0	0	4025	1080	3771	8017	19510	19510		1	9606
FANYIDKVR	1	1	Unmodified	1124.5978	0.59784335	424	P08670	VIM	Vimentin	yes	yes	0	0	1	12.5	0.5												1	1				13.572	13.572	3	0.00043834	6958	DP690-12	124.92	88.541			0.99098	1.2331	9.1976	2	0	Median	70506000	35993000	34513000	4026	424	3772	8018;8019	19511;19512;19513;19514;19515;19516;19517;19518;19519	19512		9	9606
FAQHGTFEYEYSQR	0	1	Unmodified	1761.7747	0.7746981	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	11	0											2						13.91	13.91	2;3	4.7879E-10	7801	DP690-11	209.11	170.91			0.93056	1.0638	14.108	2	0	Median	397320000	209860000	187460000	4027	566	3773	8020;8021	19520;19521;19522;19523;19524;19525	19523		6	9606
FAQPGSFEYEYAMR	0	1	Oxidation (M)	1710.7348	0.73480712	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	1	0	11.3	1.7									1			1	1				16.808	16.808	2	0.0093124	10916	DP690-9	103.08	73.743			0.79134	0.92435	8.9978	2	0	Median	306420000	166640000	139790000	4028	1322	3774	8022;8023;8024	19526;19527;19528;19529;19530;19531	19531	2042	6	9606
FAQPGSFEYEYAMR	0	1	Unmodified	1694.7399	0.73989249	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	12	0												1					18.088	18.088	2	0.00010123	13263	DP690-12	122.7	93.741			0.74944	0.871	NaN	1	0	Median	111020000	61662000	49355000	4029	1322	3774	8025	19532;19533;19534	19533		3	9606
FAQVVLQDLDKK	2	0	Unmodified	1402.782	0.78201531	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	1	12	0												2					15.983	15.983	2;3	0.00013619	10384	DP690-12	112.64	86.664			0.90914	1.0392	4.1501	2	0	Median	173930000	87534000	86398000	4030	1147	3775	8026;8027	19535;19536;19537	19536		3	9606
FASAQFPNGPQFAEDPSQLPSTQLPSSPFGDYR	0	1	Unmodified	3582.6692	0.66917698	1945	Q99595	TIMM17A	Mitochondrial import inner membrane translocase subunit Tim17-A	yes	yes	0	0	0	16	0																1	21.611	21.611	3	0.0014018	16444	DP690-16	68.269	46.651			NaN	NaN	NaN	0	0	Median	1144000	0	1144000	4031	1945	3776	8028	19538	19538		1	9606
FASENDLPEWK	1	0	Unmodified	1334.6143	0.61428128	741	P43487	RANBP1	Ran-specific GTPase-activating protein	yes	yes	0	0	0	7	0							1										17.122	17.122	2	0.03539	11028	DP690-7	67.207	43.218			0.85774	0.92484	NaN	1	0	Median	38694000	22024000	16669000	4032	741	3777	8029	19539	19539		1	9606
FASFIDK	1	0	Unmodified	826.4225	0.42250475	44;38;43;31;368;49;56	P35908;CON__P35908v2;CON__P35908;Q01546;CON__Q01546;Q7Z794;CON__Q7Z794;CON__Q6NXH9;CON__P07744;CON__Q6ISB0;CON__Q9NSB2;CON__Q9DCV7;CON__Q6IME9;CON__Q14CN4-1;CON__P08729;CON__Q3KNV1;Q14CN4;P08729;Q9NSB2;CON__P02538;P02538;CON__P48668;P48668;CON__Q8VED5;CON__P05787;P05787;CON__Q9H552;CON__P13647;P13647;P04259;CON__Q3TTY5;CON__Q9R0H5;CON__Q3SY84;Q3SY84	KRT2;KRT76;KRT77;KRT72;KRT7;KRT84;KRT6A;KRT6C;KRT8;KRT5;KRT6B;KRT71	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 71	no	no	0	0	0	9.67	4.92				1					1							1	15.296	15.296	2	0.0087145	8904	DP690-4	128.86	57.502		+	NaN	NaN	NaN	0	0	Median	109230000	109230000	0	4033	44;31;38;43;368;49;56	3778	8030;8031;8032	19540;19541;19542;19543;19544;19545	19542		6	9606
FASFIDKVR	1	1	Unmodified	1081.592	0.59202969	44;38;43;31;368;49;56	P35908;CON__P35908v2;CON__P35908;Q01546;CON__Q01546;Q7Z794;CON__Q7Z794;CON__Q6NXH9;CON__P07744;CON__Q6ISB0;CON__Q9NSB2;CON__Q9DCV7;CON__Q6IME9;CON__Q14CN4-1;CON__P08729;CON__Q3KNV1;Q14CN4;P08729;Q9NSB2;CON__P02538;P02538;CON__P48668;P48668;CON__Q8VED5;CON__P05787;P05787;CON__P13647;P13647;P04259;CON__Q3TTY5;CON__Q9R0H5;CON__Q3SY84;Q3SY84	KRT2;KRT76;KRT77;KRT72;KRT7;KRT84;KRT6A;KRT6C;KRT8;KRT5;KRT6B;KRT71	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 71	no	no	0	0	1	16	0																1	14.97	14.97	3	0.0060229	8591	DP690-16	112.41	29.66		+	NaN	NaN	NaN	0	0	Median	567640	567640	0	4034	44;31;38;43;368;49;56	3779	8033	19546	19546		1	9606
FASFPDYLVIQIK	1	0	Unmodified	1539.8337	0.83371653	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	3	0			1														22.219	22.219	2	0.00020595	17772	DP690-3	125.74	42.238			0.64563	0.69295	NaN	1	0	Median	16087000	9719300	6367500	4035	746	3780	8034	19547;19548;19549	19548		3	9606
FASQQGMTAYGTR	0	1	Oxidation (M)	1432.6405	0.6405128	845	P51911	CNN1	Calponin-1	yes	yes	0	1	0	14	0														1			11.203	11.203	2	9.5098E-05	3715	DP690-14	125.72	106.37			1.1303	1.3706	NaN	1	0	Median	27510000	12190000	15320000	4036	845	3781	8035	19550;19551	19550	1273	2	9606
FASYLTFSPSEVK	1	0	Unmodified	1474.7344	0.73439641	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											2						18.911	18.911	2	2.6718E-11	15009	DP690-11	185.33	148.26			0.80426	0.89819	NaN	1	0	Median	441070000	277150000	163920000	4037	891	3782	8036;8037	19552;19553;19554;19555;19556;19557	19557		6	9606
FATEAAITILR	0	1	Unmodified	1204.6816	0.68157298	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	8	4				1								1					18.479	18.479	2	0.00017353	12875	DP690-4	143.7	102.93			1.1041	1.298	57.108	2	0	Median	53116000	25578000	27538000	4038	520	3783	8038;8039	19558;19559;19560;19561;19562;19563;19564	19561		7	9606
FATHAAALSVR	0	1	Unmodified	1142.6196	0.61964142	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	11	0											2						12.277	12.277	3	0.00032777	5370	DP690-11	107.03	79.979			0.95397	1.138	NaN	1	0	Median	37516000	20408000	17108000	4039	566	3784	8040;8041	19565;19566	19565		2	9606
FAVALLDDSVR	0	1	Unmodified	1204.6452	0.64518747	2199	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	8	4				1								1					19.195	19.195	2	0.0034218	14832	DP690-12	91.265	48.927			0.74847	0.85963	6.536	2	0	Median	163420000	89420000	74001000	4040	2199	3785	8042;8043	19567;19568;19569	19567		3	9606
FCDNSSAIQGK	1	0	Unmodified	1225.5397	0.53973612	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	3	0			1														11.655	11.655	2	0.00017575	4202	DP690-3	143.37	101.93			0.83064	0.88206	NaN	1	0	Median	11288000	5533900	5753900	4041	134	3786	8044	19570;19571;19572;19573	19571		4	9606
FCECDNFNCDR	0	1	Unmodified	1535.5228	0.52278221	387	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	3	0			1														13.751	13.751	2	0.00014029	7015	DP690-3	137.95	137.95			0.80894	0.91429	NaN	1	0	Median	9702900	5801200	3901800	4042	387	3787	8045	19574;19575	19574		2	9606
FCFTPHTEEGCLSER	0	1	Unmodified	1868.7822	0.78216801	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		3															15.109	15.109	2;3	4.2273E-06	7807	DP690-2	169.58	160.94			0.79798	0.82207	8.9595	2	0	Median	63518000	26936000	36582000	4043	789	3788	8046;8047;8048	19576;19577;19578;19579;19580;19581;19582;19583	19576		8	9606
FCFWPDSPSPDR	0	1	Unmodified	1509.6347	0.63469914	1582	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	12	0												1					19.719	19.719	2	0.00025717	15492	DP690-12	150.27	124.2			0.61782	0.735	NaN	1	0	Median	35061000	21347000	13714000	4044	1582	3789	8049	19584;19585	19584		2	9606
FCKDTFDKNYK	3	0	Unmodified	1464.6708	0.6707503	2059	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	2	15	0															1		10.861	10.861	3	0.00019826	3363	DP690-15	117.14	90.477			0.66973	0.72956	NaN	1	0	Median	31549000	17991000	13558000	4045	2059	3790	8050	19586;19587;19588	19586		3	9606
FCLFHSFFVTK	1	0	Unmodified	1431.7009	0.70092821	1979	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	10	0										1							19.845	19.845	3	0.0014071	16536	DP690-10	89.9	70.223			1.3599	1.6714	NaN	1	0	Median	38252000	15255000	22996000	4046	1979	3791	8051	19589;19590	19589		2	9606
FCNTEDEETMYLR	0	1	Oxidation (M)	1722.6865	0.68653629	2125	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	1	0	15	0															1		15.503	15.503	2	0.010375	9428	DP690-15	80.916	68.857			0.8172	0.94408	NaN	1	0	Median	11139000	6606500	4532400	4047	2125	3792	8052	19591;19592	19591	2622	2	9606
FCQECNNMLYPK	1	0	Oxidation (M)	1618.6578	0.65781912	684	P36954	POLR2I	DNA-directed RNA polymerase II subunit RPB9	yes	yes	0	1	0	16	0																1	13.576	13.576	2	0.0019266	6649	DP690-16	103.7	92.603			0.64025	0.74883	NaN	1	0	Median	20403000	12902000	7500700	4048	684	3793	8053	19593;19594;19595;19596	19595	987	4	9606
FCSDCIVTALR	0	1	Unmodified	1340.6217	0.62169161	1126	Q06587	RING1	E3 ubiquitin-protein ligase RING1	yes	yes	0	0	0	13	0													1				17.659	17.659	2	0.0092314	12404	DP690-13	79.986	79.986			0.67752	0.81817	NaN	1	0	Median	72563000	41572000	30991000	4049	1126	3794	8054	19597;19598	19597		2	9606
FDAGELITQR	0	1	Unmodified	1148.5826	0.58258722	660	P35232	PHB	Prohibitin	yes	yes	0	0	0	15	0															1		17.276	17.276	2	8.7792E-05	11775	DP690-15	158.87	123.58			0.98329	1.0446	NaN	1	0	Median	278160000	136920000	141230000	4050	660	3795	8055	19599;19600;19601;19602	19599		4	9606
FDASFFGVHPK	1	0	Unmodified	1250.6084	0.60840804	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		2	2														17.304	17.304	2;3	0.00021135	10521	DP690-2	168.8	106.25			0.82608	0.84234	2.6373	3	0	Plateau	179140000	94617000	84523000	4051	789	3796	8056;8057;8058;8059	19603;19604;19605;19606;19607;19608;19609;19610;19611	19606		9	9606
FDCHHCNESLFGK	1	0	Unmodified	1649.6715	0.67149535	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	12.2	3.63						1								2	1		12.725	12.725	3;4	1.0752E-05	5633	DP690-14	141.73	127.98			0.94428	1.1157	5.0628	4	0	Median	741170000	375440000	365730000	4052	1258	3797	8060;8061;8062;8063	19612;19613;19614;19615;19616;19617;19618;19619;19620;19621;19622;19623;19624;19625	19614		14	9606
FDCHHCNESLFGKK	2	0	Unmodified	1777.7665	0.76645837	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	12.5	3.84						1								2		1	10.981	10.981	3;4	8.3697E-15	3326	DP690-14	225.72	218.43			1.0315	1.1491	1.0715	4	0	Median	384730000	186490000	198240000	4053	1258	3798	8064;8065;8066;8067	19626;19627;19628;19629;19630;19631;19632;19633;19634;19635;19636;19637	19626		12	9606
FDCSSAPDICSNLYVFQPSLAVFK	1	0	Unmodified	2764.2877	0.28767411	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	11	0											1						23.58	23.58	2	0.00021406	21191	DP690-11	118.2	118.2			1.1066	1.3427	NaN	1	0	Median	5773300	3596900	2176400	4054	1613	3799	8068	19638;19639;19640;19641	19638		4	9606
FDDAVVQSDMK	1	0	Oxidation (M)	1269.5547	0.55471749	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	8	4				1								1					13.081	13.081	2	0.00020075	5940	DP690-4	125.68	57.666			1.4886	1.6625	46.981	2	0	Median	192820000	75722000	117100000	4055	463	3800	8069;8070	19642;19643;19644;19645;19646;19647;19648;19649	19649	542	8	9606
FDDAVVQSDMK	1	0	Unmodified	1253.5598	0.55980286	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	6.67	3.77				2								1					14.923	14.923	2	0.0018176	8415	DP690-4	135.86	88.968			NaN	NaN	NaN	0	0	Median	66832000	44916000	21917000	4056	463	3800	8071;8072;8073	19650;19651;19652;19653;19654;19655;19656	19655		7	9606
FDDGAGGDNEVQR	0	1	Unmodified	1378.5749	0.57493566	676	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	9	4					1								1				11.822	11.822	2	0.00010221	4433	DP690-13	169.58	145.59			0.95456	1.1608	NaN	1	0	Median	27621000	6244500	21377000	4057	676	3801	8074;8075	19657;19658;19659;19660;19661	19657		5	9606
FDDGDVTECK	1	0	Unmodified	1184.4656	0.46556813	1803;93	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	no	no	0	0	0	2	0		1															12.779	12.779	2	0.0022983	5074	DP690-2	100.25	87.657			1.4235	1.4215	NaN	1	0	Median	4007400	1760800	2246600	4058	1803;93	3802	8076	19662	19662		1	9606
FDDKHIPGSPFTAK	2	0	Unmodified	1558.778	0.77799256	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	7	3.56		1							1	1							14.421	14.421	3	0.00053436	6982	DP690-2	80.719	55.484			0.88265	0.93428	5.4621	3	0	Plateau	452330000	233930000	218390000	4059	1270	3803	8077;8078;8079	19663;19664;19665;19666;19667;19668;19669	19668		7	9606
FDDKPDYSYLR	1	1	Unmodified	1417.6514	0.65139506	783;798	P49674;P48730	CSNK1E;CSNK1D	Casein kinase I isoform epsilon;Casein kinase I isoform delta	no	no	0	0	1	11.2	3.63					1								2	1			15.04	15.04	2;3	4.4436E-05	8875	DP690-13	136.49	87.491			0.66144	0.7553	9.5472	4	0	Median	411420000	234260000	177150000	4060	798;783	3804	8080;8081;8082;8083	19670;19671;19672;19673;19674;19675;19676;19677	19671		8	9606
FDDPGLMLMGFKPLVLLK	2	0	2 Oxidation (M)	2065.0992	0.099192044	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	2	1	12	0												1					21.409	21.409	3	0.00013135	17711	DP690-12	102.63	86.457			0.62605	0.72746	NaN	1	0	Median	33672000	20760000	12912000	4061	479	3805	8084	19678;19679	19679	588;589	2	9606
FDDPLLGPR	0	1	Unmodified	1028.5291	0.52909508	2305	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														17.739	17.739	2	0.005495	12309	DP690-3	97.798	62.18			0.92701	1.0614	NaN	1	0	Median	14752000	7233400	7518100	4062	2305	3806	8085	19680;19681	19680		2	9606
FDDTNPEKEEAK	2	0	Unmodified	1421.6311	0.63105355	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	1	7	4			2								2						10.561	10.561	2;3	0.00023085	3030	DP690-11	190.57	145.55			NaN	NaN	NaN	0	0	Median	21038000	21038000	0	4063	770	3807	8086;8087;8088;8089	19682;19683;19684;19685	19682		4	9606
FDDTNPEKEKEDFEK	3	0	Unmodified	1869.8269	0.82685283	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	2	4.67	3.77		2								1							12.619	12.619	3;4	0.00044367	6049	DP690-10	100.4	100.4			0.84226	0.89744	8.4882	3	0	Median	129120000	65131000	63986000	4064	408	3808	8090;8091;8092	19686;19687;19688;19689;19690;19691	19686		6	9606
FDEATQLR	0	1	Unmodified	978.47706	0.47705951	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	3	0			1														13.101	13.101	2	0.047408	6064	DP690-3	133.81	96.254			0.82119	0.91893	NaN	1	0	Median	35866000	17963000	17903000	4065	518	3809	8093	19692	19692		0	9606
FDEISFVNFAR	0	1	Unmodified	1343.651	0.65100113	1139	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	12	0												1					20.79	20.79	2	0.051141	16926	DP690-12	61.65	44.624			0.71767	0.87543	NaN	1	0	Median	7319900	4410800	2909100	4066	1139	3810	8094	19693	19693		1	9606
FDEVLIR	0	1	Unmodified	890.48617	0.48616764	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						16.407	16.407	2	0.03981	11443	DP690-11	128.82	49.365			NaN	NaN	NaN	0	0	Median	0	0	0	4067	65	3811	8095	19694	19694		1	9606
FDFVHDLVLYLYR	0	1	Unmodified	1698.877	0.87697832	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	10	0										1							24.679	24.679	3	0.017823	22720	DP690-10	78.324	46.66			NaN	NaN	NaN	0	0	Median	0	0	0	4068	1075	3812	8096	19695	19695		1	9606
FDGALNVDLTEFQTNLVPYPR	0	1	Unmodified	2408.2012	0.20122559	1032;1521;1977;452;1033	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;Q9BQE3;P68366	TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain	no	no	0	0	0	8.14	3.31					2	2			1				2				23.22	23.22	2;3	1.045E-61	19234	DP690-13	317.77	272.41			0.94462	0.98895	11.281	5	0	Median	298960000	153730000	145230000	4069	452;1032;1521;1977;1033	3813	8097;8098;8099;8100;8101;8102;8103	19696;19697;19698;19699;19700;19701;19702;19703;19704;19705;19706;19707;19708;19709;19710;19711;19712;19713;19714;19715;19716;19717;19718	19697		23	9606
FDGLLGFPGGFVDR	0	1	Unmodified	1495.746	0.74596415	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	0	12.3	3.77							1								2		22.518	22.518	2	0.0030357	18099	DP690-15	88.155	64.166			0.7971	0.92176	14.574	3	0	Median	20700000	11996000	8703700	4070	1983	3814	8104;8105;8106	19719;19720;19721;19722;19723;19724	19721		6	9606
FDGLLGFPGGFVDRR	0	2	Unmodified	1651.8471	0.84707518	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	1	11	4							1								1		20.227	20.227	3	0.0012804	15343	DP690-15	116.24	89.268			0.79651	0.8403	1.9082	2	0	Median	12186000	6028600	6157000	4071	1983	3815	8107;8108	19725;19726;19727;19728	19726		4	9606
FDLLFIMLDQMDPEQDREISDHVLR	0	2	2 Oxidation (M)	3106.474	0.47397133	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	2	1	11	0											1						21.302	21.302	4	0.00042153	18375	DP690-11	72.568	60.1			0.68172	0.84037	NaN	1	0	Median	36449000	21719000	14730000	4072	581	3816	8109	19729	19729	763;764	1	9606
FDLLWLIQDRPDR	0	2	Unmodified	1685.8889	0.88893999	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	1	11	0											1						22.52	22.52	3	3.7064E-05	19927	DP690-11	138.99	100.19			0.79189	0.97618	NaN	1	0	Median	24648000	13811000	10837000	4073	653	3817	8110	19730;19731;19732;19733	19730		4	9606
FDLMYAK	1	0	Unmodified	886.42588	0.42587556	1032;1521;1977;452;1033;11	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;Q9BQE3;P68366;A6NHL2	TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBAL3	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3	no	no	0	0	0	5	0					1												16.806	16.806	1	0.021094	10434	DP690-5	107.43	42.626			NaN	NaN	NaN	0	0	Median	11610000	0	11610000	4074	452;1032;1521;1977;1033;11	3818	8111	19734	19734		1	9606
FDLNEPLHLSFLQNAAK	1	0	Unmodified	1956.0105	0.010511692	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														20.666	20.666	3	4.0285E-05	15927	DP690-3	120.54	104.91			0.77768	0.82205	NaN	1	0	Median	36800000	20835000	15965000	4075	5	3819	8112	19735;19736;19737;19738	19736		4	9606
FDLSQNHPLGMAIFLK	1	0	Oxidation (M)	1845.9447	0.94474031	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	2.33	0.471		2	1														18.838	18.838	2;3	0.00035692	12292	DP690-2	116.24	91.003			0.82584	0.84537	4.883	3	0	Plateau	106660000	58499000	48165000	4076	789	3820	8113;8114;8115	19739;19740;19741;19742;19743;19744;19745;19746;19747;19748;19749	19748	1178	11	9606
FDLSQNHPLGMAIFLK	1	0	Unmodified	1829.9498	0.94982569	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															20.62	20.62	3	0.0004273	14189	DP690-2	91.789	61.717			0.79428	0.7993	NaN	1	0	Median	9217400	5155900	4061500	4077	789	3820	8116	19750;19751;19752;19753;19754;19755	19751		6	9606
FDMAENVVIVASQK	1	0	Oxidation (M)	1565.7759	0.77594365	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	1	0	2	0		1															16.505	16.505	2	0.0038987	9588	DP690-2	117.23	81.325			NaN	NaN	NaN	0	0	Median	2637500	0	2637500	4078	1555	3821	8117	19756;19757	19757	2230	2	9606
FDMELDDLPK	1	0	Oxidation (M)	1237.5537	0.55365485	610	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	1	0	6	0						1											16.825	16.825	2	0.01629	10290	DP690-6	100.25	57.958			NaN	NaN	NaN	0	0	Median	2112100	2112100	0	4079	610	3822	8118	19758;19759	19759	848	2	9606
FDMIVPILEK	1	0	Unmodified	1203.6573	0.65733206	1206	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	13	0													1				21.43	21.43	2	0.0076997	17203	DP690-13	86.882	70.875			0.87731	0.99046	NaN	1	0	Median	6501500	3428600	3072900	4080	1206	3823	8119	19760;19761	19760		2	9606
FDNALFHAER	0	1	Unmodified	1218.5782	0.57817054	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	4	0				2													14.714	14.714	2;3	0.0099237	8137	DP690-4	108.47	66.817			79.527	78.531	NaN	1	0	Median	490410000	6230000	484180000	4081	1784	3824	8120;8121	19762;19763;19764;19765	19765		4	9606
FDNNEMGAVMGANGIR	0	1	2 Oxidation (M)	1726.7403	0.7403032	2546				yes	yes	0	2	0	13	0													1				16.245	16.245	2	0.0013925	10447	DP690-13	94.82	82.901	+		0.72295	0.88073	NaN	1	0	Median	43512000	25039000	18473000	4082	2546	3825	8122	19766;19767;19768	19768	2973;2974	3	9606
FDNVLPVSLAFDK	1	0	Unmodified	1463.766	0.76603089	318	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	4	0				1													21.189	21.189	2	0.00027388	16058	DP690-4	115.57	79.666			0.82583	0.88742	NaN	1	0	Median	5282200	2875200	2407100	4083	318	3826	8123	19769;19770;19771	19769		3	9606
FDPMGQQTCSAHPAR	0	1	Oxidation (M)	1717.7301	0.73007286	2181	Q9NPE3	NOP10	H/ACA ribonucleoprotein complex subunit 3	yes	yes	0	1	0	16	0																2	10.371	10.371	3	0.0016048	2816	DP690-16	113.25	78.246			NaN	NaN	NaN	0	0	Median	7331200	7331200	0	4084	2181	3827	8124;8125	19772;19773	19772	2663	2	9606
FDQLFDDESDPFEVLK	1	0	Unmodified	1942.8836	0.88363942	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	12.4	3.88					1								2		1	1	22.894	22.894	2	3.7935E-22	18877	DP690-13	250.52	167.02			0.81017	0.90491	10.251	5	0	Median	258500000	140440000	118060000	4085	1678	3828	8126;8127;8128;8129;8130	19774;19775;19776;19777;19778;19779;19780;19781;19782;19783;19784;19785;19786;19787;19788;19789;19790;19791;19792	19776		19	9606
FDQLLAEEK	1	0	Unmodified	1091.5499	0.5498901	668;669;1543	P35579;Q7Z406;P35580	MYH9;MYH14;MYH10	Myosin-9;Myosin-14;Myosin-10	no	no	0	0	0	2	0		1															15.039	15.039	2	0.002374	7724	DP690-2	110.87	83.618			1.2287	1.2432	NaN	1	0	Median	24299000	10805000	13494000	4086	668;1543;669	3829	8131	19793;19794	19793		2	9606
FDSLTDLVEHYK	1	0	Unmodified	1465.7089	0.70890994	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	4	0				1													19.407	19.407	3	0.00066246	13976	DP690-4	95.477	77.274			0.73879	0.80422	NaN	1	0	Median	10324000	5969000	4354600	4087	1120	3830	8132	19795;19796;19797;19798	19795		4	9606
FDSLTDLVEHYKK	2	0	Unmodified	1593.8039	0.80387296	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	1	4	0				1													17.532	17.532	3	0.017377	11889	DP690-4	48.704	26.213			0.85852	0.88978	NaN	1	0	Median	20707000	11810000	8897600	4088	1120	3831	8133	19799	19799		1	9606
FDSNCITPGTEFMDNLAK	1	0	Unmodified	2058.9027	0.90267708	2088	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	11	0											1						20.399	20.399	2	0.00013701	17132	DP690-11	118.08	82.343			0.75276	0.92645	NaN	1	0	Median	10580000	5615900	4964300	4089	2088	3832	8134	19800	19800		1	9606
FDSPESHVGVAWR	0	1	Unmodified	1485.7001	0.70007659	666	P35520	CBS	Cystathionine beta-synthase	yes	yes	0	0	0	4	0				1													15.29	15.29	3	3.1401E-05	8854	DP690-4	143	120.08			0.76728	0.84324	NaN	1	0	Median	48942000	28110000	20832000	4090	666	3833	8135	19801;19802;19803;19804;19805	19803		5	9606
FDTEEEFKKR	2	1	Unmodified	1327.6408	0.64083038	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	2	4	0				1													11.213	11.213	3	0.015482	3701	DP690-4	73.841	73.841			1.0405	1.1289	NaN	1	0	Median	9094800	4553700	4541200	4091	886	3834	8136	19806	19806		1	9606
FDTGNLCMVTGGANLGR	0	1	Oxidation (M)	1797.8138	0.81380249	986	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	0	15	0															1		17.345	17.345	2	2.686E-07	11857	DP690-15	164.92	140.63			0.95781	1.0471	NaN	1	0	Median	132130000	67659000	64471000	4092	986	3835	8137	19807;19808;19809;19810	19810	1503	4	9606
FDTIYQILLK	1	0	Unmodified	1252.7067	0.7067251	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	9.8	3.19				1					1		1	1	1				22.123	22.123	2	3.1696E-05	18446	DP690-12	175.38	119.85			0.92641	1.0614	16.627	4	0	Median	198440000	99841000	98604000	4093	1269	3836	8138;8139;8140;8141;8142	19811;19812;19813;19814;19815;19816;19817;19818;19819;19820;19821;19822;19823;19824;19825;19826;19827;19828;19829	19818		19	9606
FDVFYCMNITDIDDK	1	0	Oxidation (M)	1910.8067	0.80665143	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	3	0			1														20.197	20.197	2	0.00081656	15402	DP690-3	107.39	90.364			0.71006	0.74931	NaN	1	0	Median	8559900	5224400	3335500	4094	797	3837	8143	19830;19831;19832;19833	19830	1207	4	9606
FDVQLKDLEK	2	0	Unmodified	1233.6605	0.66050319	968	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	1	12	4								2								2	16.277	16.277	2;3	0.0002423	10126	DP690-16	115.7	10.303			0.88363	0.96091	7.0379	4	0	Linear	1237100000	655960000	581110000	4095	968	3838	8144;8145;8146;8147	19834;19835;19836;19837;19838;19839;19840;19841;19842;19843;19844	19839		11	9606
FDVQWIFVK	1	0	Unmodified	1180.6281	0.62808085	2053	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	0	0	12	0												1					22.034	22.034	2	0.02239	18362	DP690-12	77.058	61.907			4.4179	5.3614	NaN	1	0	Median	5553600	1903900	3649700	4096	2053	3839	8148	19845;19846	19845		2	9606
FEDENFILK	1	0	Unmodified	1153.5655	0.56554017	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	12	4								1								1	17.813	17.813	2	0.00070003	11122	DP690-8	139.97	110.59			0.74962	0.83282	7.9807	2	0	Median	96754000	51935000	44819000	4097	1008	3840	8149;8150	19847;19848;19849;19850;19851;19852	19849		6	9606
FEDKTVAYTEQK	2	0	Unmodified	1457.7038	0.70382456	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	1	4	0				1													11.679	11.679	3	0.047887	4221	DP690-4	46.88	25.105			0.95638	0.98313	NaN	1	0	Median	6562900	3174300	3388600	4098	623	3841	8151	19853;19854	19854		2	9606
FEDYLNAESR	0	1	Unmodified	1242.5517	0.55168102	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	13	0													1				15.731	15.731	2	1.8965E-06	9680	DP690-13	169.09	95.839			NaN	NaN	NaN	0	0	Median	122470000	122470000	0	4099	1351	3842	8152	19855;19856	19856		2	9606
FEEEFIK	1	0	Unmodified	940.4542	0.45419881	2507	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	12	0												1					15.749	15.749	2	0.0087145	10099	DP690-12	128.86	76.562			NaN	NaN	NaN	0	0	Median	25723000	25723000	0	4100	2507	3843	8153	19857;19858	19857		2	9606
FEEEIKAEQEER	1	1	Unmodified	1535.7104	0.71036651	1830	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	1	11	4							3								3		12.22	12.22	2;3	1.2142E-24	4853	DP690-7	223.87	166.96			0.958	1.0729	23.363	2	0	Median	145990000	62512000	83481000	4101	1830	3844	8154;8155;8156;8157;8158;8159	19859;19860;19861;19862;19863;19864;19865;19866;19867;19868;19869;19870	19868		12	9606
FEEFQNTLSK	1	0	Unmodified	1241.5928	0.59281755	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	11	0											1						15.372	15.372	2	0.0096506	9924	DP690-11	117.31	53.893			NaN	NaN	NaN	0	0	Median	0	0	0	4102	701	3845	8160	19871	19871		1	9606
FEELNADLFR	0	1	Unmodified	1252.6088	0.60880197	463	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	6	3.16			1	1	1	1						1					19.293	19.293	2	9.0135E-11	14913	DP690-12	190.26	96			1.9524	2.017	NaN	1	0	Median	256100000	54693000	201410000	4103	463	3846	8161;8162;8163;8164;8165	19872;19873;19874;19875;19876;19877;19878;19879;19880	19873		9	9606
FEEMIQQIK	1	0	Oxidation (M)	1180.5798	0.57981002	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	0	4	0				1													14.102	14.102	2	0.031291	7381	DP690-4	90.37	38.421			NaN	NaN	NaN	0	0	Median	4685400	4685400	0	4104	779	3847	8166	19881	19881	1156	1	9606
FEGDTLVNR	0	1	Unmodified	1049.5142	0.5141733	57	CON__Q9U6Y5			yes	yes	0	0	0	6.35	2.44	2	1	1	1	15	7	20	3	1				1	1	1		18.939	18.939	2	1.5707E-06	12758	DP690-7	170.66	99.752		+	4.9332	4.9204	218.97	14	0	Median	216460000000	98212000000	118250000000	4105	57	3848	8167;8168;8169;8170;8171;8172;8173;8174;8175;8176;8177;8178;8179;8180;8181;8182;8183;8184;8185;8186;8187;8188;8189;8190;8191;8192;8193;8194;8195;8196;8197;8198;8199;8200;8201;8202;8203;8204;8205;8206;8207;8208;8209;8210;8211;8212;8213;8214;8215;8216;8217;8218;8219;8220	19882;19883;19884;19885;19886;19887;19888;19889;19890;19891;19892;19893;19894;19895;19896;19897;19898;19899;19900;19901;19902;19903;19904;19905;19906;19907;19908;19909;19910;19911;19912;19913;19914;19915;19916;19917;19918;19919;19920;19921;19922;19923;19924;19925;19926;19927;19928;19929;19930;19931;19932;19933;19934;19935;19936;19937;19938;19939;19940;19941;19942;19943;19944;19945;19946;19947;19948;19949;19950;19951;19952;19953;19954;19955;19956;19957;19958;19959;19960;19961;19962;19963;19964;19965;19966;19967;19968;19969;19970;19971;19972;19973;19974;19975;19976;19977;19978;19979;19980;19981;19982;19983;19984;19985;19986;19987;19988;19989;19990;19991;19992;19993;19994;19995;19996;19997;19998;19999;20000;20001;20002;20003;20004;20005;20006;20007;20008;20009;20010;20011;20012;20013;20014;20015;20016;20017;20018;20019;20020;20021;20022;20023;20024;20025;20026;20027;20028;20029;20030;20031;20032;20033	19985		152	
FEGDTLVNRIELK	1	1	Unmodified	1532.8199	0.81985737	57	CON__Q9U6Y5			yes	yes	0	0	1	6	1					1		1										17.168	17.168	3	0.0027536	11051	DP690-7	79.283	57.627		+	0.038311	0.040379	NaN	1	0	Median	281480000	228940000	52533000	4106	57	3849	8221;8222	20034;20035;20036;20037	20036		4	
FEGEPATHTQPGVQLQSNTYDLQESNVR	0	1	Unmodified	3144.4748	0.47483427	1248	Q14141	SEPT6	Septin-6	yes	yes	0	0	0	13	0													1				15.878	15.878	3	2.4961E-18	10020	DP690-13	175.99	166.56			0.56114	0.67392	NaN	1	0	Median	88865000	55257000	33608000	4107	1248	3850	8223	20038;20039;20040;20041;20042;20043	20042		6	9606
FEGKPLLQR	1	1	Unmodified	1086.6186	0.61857879	2109	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	0	0	1	8	0								2									12.042	12.042	3	0.0024049	4621	DP690-8	95.815	67.607			0.82874	0.9636	NaN	1	0	Median	2520000	1845100	674890	4108	2109	3851	8224;8225	20044;20045;20046;20047	20044		4	9606
FEGPYTDFTPWTTEEQK	1	0	Unmodified	2074.916	0.91600218	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	11	0											1						20.154	20.154	2	2.5096E-08	16782	DP690-11	177.16	158.43			0.58566	0.71088	NaN	1	0	Median	40189000	22693000	17497000	4109	1941	3852	8226	20048;20049;20050	20048		3	9606
FEGRPVPDGDAK	1	1	Unmodified	1286.6255	0.62551466	8	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	1	11	0											1						10.641	10.641	3	0.041822	3014	DP690-11	73.273	29.855			NaN	NaN	NaN	0	0	Median	0	0	0	4110	8	3853	8227	20051	20051		1	9606
FEIWDTAGQER	0	1	Unmodified	1350.6204	0.62042929	830;542;936	P51148;P20339;P61020	RAB5C;RAB5A;RAB5B	Ras-related protein Rab-5C;Ras-related protein Rab-5A;Ras-related protein Rab-5B	no	no	0	0	0	15	0															1		17.889	17.889	2	0.0076788	12569	DP690-15	83	57.061			0.90238	1.043	NaN	1	0	Median	12145000	6160500	5984300	4111	830;542;936	3854	8228	20052;20053	20052		2	9606
FELLCSPLFNK	1	0	Unmodified	1366.6955	0.69550848	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	12	0												1					21.072	21.072	2	0.0033083	17204	DP690-12	128.86	85.05			NaN	NaN	NaN	0	0	Median	16160000	16160000	0	4112	1147	3855	8229	20054	20054		1	9606
FELLSEPQSGDLTSVTLMK	1	0	Oxidation (M)	2110.0504	0.050387176	2128	Q9H6Y2	WDR55	WD repeat-containing protein 55	yes	yes	0	1	0	13	0													1				20.122	20.122	2	0.0038838	15584	DP690-13	78.529	78.529			0.90815	1.0385	NaN	1	0	Median	10951000	5423900	5527100	4113	2128	3856	8230	20055;20056	20055	2624	2	9606
FELQHGTEEQQEEVR	0	1	Unmodified	1857.8493	0.8493196	298	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	11	0											1						12.905	12.905	3	6.0915E-06	6245	DP690-11	136.57	125.25			0.49502	0.59612	NaN	1	0	Median	106090000	64640000	41452000	4114	298	3857	8231	20057;20058;20059	20057		3	9606
FELTGIPPAPR	0	1	Unmodified	1196.6554	0.65535823	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	8	4				1								1					17.412	17.412	2	0.004229	12276	DP690-12	89.698	89.698			0.892	1.0276	42.809	2	0	Median	115030000	70010000	45020000	4115	463	3858	8232;8233	20060;20061;20062	20060		3	9606
FELYQIFSTPDYGK	1	0	Unmodified	1706.8192	0.81918867	1607	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	2	0		1															22.392	22.392	2	0.025552	16120	DP690-2	91.469	56.291			NaN	NaN	NaN	0	0	Median	470300	0	470300	4116	1607	3859	8234	20063	20063		1	9606
FEMEQNLR	0	1	Oxidation (M)	1081.4862	0.48624399	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	2.5	1.5	1			1													11.619	11.619	2	0.0073346	4053	DP690-4	120.65	73.563		+	NaN	NaN	NaN	0	0	Median	12332000	12332000	0	4117	667	3860	8235;8236	20064;20065;20066	20065	937	3	9606
FENAFLSHVVSQHQALLGTIR	0	1	Unmodified	2366.2495	0.24951318	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	12.5	0.5												2	2				19.169	19.169	3;4	3.1589E-24	14350	DP690-13	211.11	195.39			0.84101	0.95935	11.408	4	0	Median	550130000	300590000	249550000	4118	585	3861	8237;8238;8239;8240	20067;20068;20069;20070;20071;20072;20073;20074;20075;20076;20077	20074		10	9606
FEPPQSDSDGQR	0	1	Unmodified	1361.5848	0.58477206	133	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	9	0									1								11.416	11.416	2	0.0015458	3918	DP690-9	99.653	73.714			0.58626	0.7326	NaN	1	0	Median	4073300	2130800	1942500	4119	133	3862	8241	20078;20079	20079		2	9606
FEPYANPTKR	1	1	Unmodified	1221.6142	0.6142217	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	12	0												1					11.459	11.459	3	0.0099303	4095	DP690-12	69.276	40.478			0.76362	0.98484	NaN	1	0	Median	25236000	14051000	11185000	4120	849	3863	8242	20080;20081	20081		2	9606
FEQLCLQQQEK	1	0	Unmodified	1449.6922	0.69221402	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								14.877	14.877	2	0.00012456	8363	DP690-9	135.55	74.387			1.0212	1.3057	NaN	1	0	Median	11809000	5407500	6401300	4121	2411	3864	8243	20082;20083;20084	20084		3	9606
FESDPATHNEPGVR	0	1	Unmodified	1554.7063	0.70628418	2231	Q9NVA2	SEPT11	Septin-11	yes	yes	0	0	0	13	0													3				11.045	11.045	2;3	9.6759E-06	3409	DP690-13	130.69	102.36			0.70292	0.84097	NaN	1	0	Median	95588000	55796000	39792000	4122	2231	3865	8244;8245;8246	20085;20086;20087;20088;20089;20090;20091	20086		7	9606
FESLEPEMNNQASR	0	1	Oxidation (M)	1666.7257	0.72569899	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										1							13.635	13.635	2	0.007574	7423	DP690-10	83.226	72.939			0.97026	1.2129	NaN	1	0	Median	62649000	30064000	32585000	4123	1080	3866	8247	20092;20093	20092	1693	2	9606
FESLEPEMNNQASR	0	1	Unmodified	1650.7308	0.73078437	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							15.251	15.251	2	1.0609E-06	9894	DP690-10	192.5	170.42			0.61627	0.77178	NaN	1	0	Median	53595000	31940000	21655000	4124	1080	3866	8248	20094;20095;20096;20097	20095		4	9606
FESPEVAER	0	1	Unmodified	1062.4982	0.49818889	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11.5	0.5											1	1					13.007	13.007	2	0.00082286	6402	DP690-11	131.03	96.224			0.73821	0.83666	6.4699	2	0	Median	459380000	266530000	192840000	4125	849	3867	8249;8250	20098;20099;20100;20101;20102;20103	20100		6	9606
FESQDTVALLEAILDGIVDPVDSTLR	0	1	Unmodified	2815.4491	0.44912001	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								30.173	30.173	2	4.7321E-62	24333	DP690-9	297.55	264.4			0.76643	0.96051	NaN	1	0	Median	6057900	3241400	2816500	4126	1046	3868	8251	20104;20105;20106;20107;20108;20109	20109		6	9606
FETEKNNGAGYFLEHLAFK	2	0	Unmodified	2214.0746	0.074568512	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	1	13	0													2				18.735	18.735	3;4	9.1303E-06	13786	DP690-13	156	133.01			0.85941	0.94423	1.3084	2	0	Median	558160000	269070000	289090000	4127	637	3869	8252;8253	20110;20111;20112;20113	20112		4	9606
FETEPVSK	1	0	Unmodified	935.46001	0.46001246	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	11	0											1						11.141	11.141	2	0.03818	3758	DP690-11	120.46	44.422			NaN	NaN	NaN	0	0	Median	0	0	0	4128	2501	3870	8254	20114	20114		1	9606
FETFCLDPSLVTK	1	0	Unmodified	1555.7592	0.75923095	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	8	4				1								1					20.229	20.229	2	4.659E-06	16213	DP690-12	192.5	162.73			0.89683	1.0386	NaN	1	0	Median	115260000	61974000	53287000	4129	2342	3871	8255;8256	20115;20116;20117;20118;20119	20118		5	9606
FEVQHSEGYR	0	1	Unmodified	1250.568	0.56799978	2256	Q9NXR1	NDE1	Nuclear distribution protein nudE homolog 1	yes	yes	0	0	0	14	0														1			11.061	11.061	3	0.011905	3533	DP690-14	69.276	36.085			0.78823	0.96626	NaN	1	0	Median	15396000	8220000	7175600	4130	2256	3872	8257	20120;20121;20122;20123	20120		4	9606
FFADLLDYIK	1	0	Unmodified	1243.6489	0.64887587	356	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	7	0							1										23.524	23.524	2	0.00070251	18657	DP690-7	112.84	48.635			0.80695	0.87907	NaN	1	0	Median	17701000	10421000	7279600	4131	356	3873	8258	20124;20125;20126;20127;20128;20129	20125		6	9606
FFALVNALDEHLFPVR	0	1	Unmodified	1887.0043	0.004304102	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										1							22.733	22.733	3	0.02616	20408	DP690-10	76.358	47.345			NaN	NaN	NaN	0	0	Median	6741300	6741300	0	4132	1901	3874	8259	20130	20130		1	9606
FFCFQVLEHQVK	1	0	Unmodified	1580.781	0.78096945	182	O43592	XPOT	Exportin-T	yes	yes	0	0	0	3	0			1														18.381	18.381	3	0.0082825	13119	DP690-3	69.815	21.539			1.0196	1.0896	NaN	1	0	Median	24157000	11034000	13123000	4133	182	3875	8260	20131	20131		1	9606
FFDEESYSLLR	0	1	Unmodified	1404.6561	0.65614609	836	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	0	16	0																1	19.678	19.678	2	2.6343E-06	14299	DP690-16	207.68	173.43			0.85634	0.98558	NaN	1	0	Median	29447000	16648000	12799000	4134	836	3876	8261	20132;20133	20133		2	9606
FFEHFIEGGR	0	1	Unmodified	1237.588	0.58800695	1856	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	6	0						1											16.577	16.577	3	0.00087054	10024	DP690-6	99.788	71.706			0.7991	0.90906	NaN	1	0	Median	15946000	8660300	7285500	4135	1856	3877	8262	20134;20135	20134		2	9606
FFEILSPVYR	0	1	Unmodified	1269.6758	0.67575932	1117	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	11	0											1						20.7	20.7	2	0.00016058	17616	DP690-11	133.86	104.78			0.78179	0.93313	NaN	1	0	Median	45365000	25948000	19417000	4136	1117	3878	8263	20136;20137;20138;20139	20138		4	9606
FFGPNAEISQPPALSQLVNLYLGR	0	1	Unmodified	2630.3857	0.38567232	1974	Q9BQ70	TCF25	Transcription factor 25	yes	yes	0	0	0	11	0											1						25.442	25.442	2	0.00068568	23381	DP690-11	101.01	60.025			NaN	NaN	NaN	0	0	Median	0	0	0	4137	1974	3879	8264	20140	20140		1	9606
FFIFALTPQQVR	0	1	Unmodified	1465.8082	0.80817048	279	O75928	PIAS2	E3 SUMO-protein ligase PIAS2	yes	yes	0	0	0	12	0												1					21.993	21.993	2	0.072868	18318	DP690-12	102.07	64.876			NaN	NaN	NaN	0	0	Median	0	0	0	4138	279	3880	8265	20141	20141		1	9606
FFLEETLVR	0	1	Unmodified	1152.6179	0.61791009	2279	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	3	0			2														19.631	19.631	2	0.033907	14782	DP690-3	110.12	68.011			NaN	NaN	NaN	0	0	Median	18482000	7837000	10645000	4139	2279	3881	8266;8267	20142;20143;20144	20142		3	9606
FFLLENVR	0	1	Unmodified	1036.5706	0.57056597	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							19.711	19.711	2	0.041729	16275	DP690-10	128.86	94.689			0.78053	0.96267	NaN	1	0	Median	132260000	68887000	63370000	4140	591	3882	8268	20145	20145		0	9606
FFLSSGLIDKVDNFK	2	0	Unmodified	1728.9087	0.90867238	2004	Q9BTV4	TMEM43	Transmembrane protein 43	yes	yes	0	0	1	14	0														1			20.081	20.081	3	0.00010037	15718	DP690-14	115.09	63.366			0.81482	0.91499	NaN	1	0	Median	27202000	14411000	12791000	4141	2004	3883	8269	20146;20147	20147		2	9606
FFPYNYHR	0	1	Unmodified	1142.5298	0.52976378	1414	Q5EBL8	PDZD11	PDZ domain-containing protein 11	yes	yes	0	0	0	16	0																1	14.288	14.288	3	0.022788	7628	DP690-16	85.265	40.916			NaN	NaN	NaN	0	0	Median	2117500	2117500	0	4142	1414	3884	8270	20148;20149	20149		2	9606
FFQEENTEK	1	0	Unmodified	1170.5193	0.51931826	73	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	5	0					1												12.173	12.173	2	0.0096959	4721	DP690-5	114.28	81.019			NaN	NaN	NaN	0	0	Median	7040900	0	7040900	4143	73	3885	8271	20150;20151	20151		2	9606
FFQGMPEKPTTTVR	1	1	Oxidation (M)	1653.8185	0.81847717	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	1	1	7	4			1								1						12.532	12.532	3	0.00095282	5764	DP690-11	89.663	70.377			0.33136	0.37086	100.97	2	0	Median	186730000	116860000	69876000	4144	736	3886	8272;8273	20152;20153;20154;20155	20153	1084	4	9606
FFQPTEMAAQDFFQR	0	1	Oxidation (M)	1877.8407	0.84066917	339	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	1	0	11	0											1						19.995	19.995	2	0.00084277	16590	DP690-11	107.09	23.866			0.82122	0.9952	NaN	1	0	Median	20799000	10743000	10056000	4145	339	3887	8274	20156;20157;20158	20156	348	3	9606
FFQPTEMAAQDFFQR	0	1	Unmodified	1861.8458	0.84575455	339	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	11	0											1						21.168	21.168	2	0.018416	18157	DP690-11	107.97	68.701			NaN	NaN	NaN	0	0	Median	0	0	0	4146	339	3887	8275	20159	20159		1	9606
FFQSHYFHR	0	1	Unmodified	1267.5887	0.58867565	646	P32780	GTF2H1	General transcription factor IIH subunit 1	yes	yes	0	0	0	12	0												1					12.883	12.883	3	0.0076916	6073	DP690-12	81.594	63.786			0.82626	0.98204	NaN	1	0	Median	62476000	34200000	28276000	4147	646	3888	8276	20160;20161	20161		2	9606
FFRPHFLQAPGDLTVQEGK	1	1	Unmodified	2186.1273	0.12727278	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	10.7	0.471										1	2						16.954	16.954	3;4	1.9554E-07	12206	DP690-11	142.58	116.17			0.71257	0.8378	5.8189	3	0	Median	501020000	284470000	216540000	4148	1758	3889	8277;8278;8279	20162;20163;20164;20165;20166;20167;20168	20167		7	9606
FFTQPEKDFCNDK	2	0	Unmodified	1674.7348	0.73480712	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	1	10	0										1							14.307	14.307	3	0.06126	8507	DP690-10	47.242	28.414			0.71337	0.88342	NaN	1	0	Median	88970000	45579000	43392000	4149	1377	3890	8280	20169	20169		1	9606
FFVAPFPEVFGK	1	0	Unmodified	1383.7227	0.72270951	32	CON__P02662			yes	yes	0	0	0	6	3.98	1	1	3	1	1	1	4							1	1		23.223	23.223	2	5.5552E-07	17861	DP690-3	167.12	124.93		+	NaN	NaN	NaN	0	0	Median	1629799999.9999998	1629799999.9999998	0	4150	32	3891	8281;8282;8283;8284;8285;8286;8287;8288;8289;8290;8291;8292;8293;8294	20170;20171;20172;20173;20174;20175;20176;20177;20178;20179;20180;20181;20182;20183;20184;20185;20186;20187;20188;20189;20190;20191	20180		22	
FGALTAEK	1	0	Unmodified	835.44397	0.44396847	319	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	7	0							1										12.39	12.39	2	0.053657	5087	DP690-7	113.89	55.722			0.87091	0.92975	NaN	1	0	Median	82365000	44633000	37732000	4151	319	3892	8295	20192	20192		0	9606
FGAPPHAGGGIGLER	0	1	Unmodified	1434.7368	0.73679645	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	12	0												1					13.675	13.675	3	0.0067978	7054	DP690-12	65.565	37.883			0.66215	0.77389	NaN	1	0	Median	99296000	54468000	44828000	4152	495	3893	8296	20193;20194;20195	20193		3	9606
FGAQNEEMLPSILVLLK	1	0	Oxidation (M)	1917.0281	0.028135591	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	1	0	7	4			1								1						23.319	23.319	2	3.8154E-07	18881	DP690-3	156.08	127.8			3.3785	3.8221	155.55	2	0	Median	16503000	3082100	13421000	4153	2515	3894	8297;8298	20196;20197;20198;20199;20200;20201;20202	20200	2952	7	9606
FGAVTVISPLELIR	0	1	Unmodified	1513.8868	0.88681473	1713	Q8TBP6	SLC25A40	Solute carrier family 25 member 40	yes	yes	0	0	0	14	0														1			22.712	22.712	2	3.2436E-05	19039	DP690-14	131.83	131.83			0.63964	0.7958	NaN	1	0	Median	8258700	4104700	4153900	4154	1713	3895	8299	20203;20204	20204		2	9606
FGAYIVDGLR	0	1	Unmodified	1109.5869	0.58694431	1179	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	0	0	2	0		1															18.249	18.249	2	0.015725	11527	DP690-2	90.709	63.92			1.063	1.1127	NaN	1	0	Median	6531700	3367100	3164600	4155	1179	3896	8300	20205;20206;20207;20208	20205		4	9606
FGDLDEQEFVYKEPAITK	2	0	Unmodified	2128.0365	0.036451671	1901	Q96N67;Q8NF50	DOCK7;DOCK8	Dedicator of cytokinesis protein 7;Dedicator of cytokinesis protein 8	yes	no	0	0	1	10	0										1							17.891	17.891	3	0.073637	13700	DP690-10	38.057	21.208			0.63052	0.77912	NaN	1	0	Median	91555000	52111000	39444000	4156	1901	3897	8301	20209	20209		1	9606
FGDPECQVILPLLK	1	0	Unmodified	1627.8644	0.86436473	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3.5	0.866			3		1												21.542	21.542	2	1.5314E-07	16973	DP690-3	173.04	124.52			0.74015	0.73823	NaN	1	0	Median	70049000	28845000	41204000	4157	559	3898	8302;8303;8304;8305	20210;20211;20212;20213;20214;20215;20216;20217;20218	20211		9	9606
FGDPVVQSDMK	1	0	Oxidation (M)	1237.5649	0.56488824	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	0	8	4				1								1					13.186	13.186	2	0.0067116	6057	DP690-4	90.05	56.672			0.91199	1.0345	57.675	2	0	Median	72695000	37451000	35244000	4158	449	3899	8306;8307	20219;20220;20221	20221	515	3	9606
FGDYQCNSAMGISQMLK	1	0	2 Oxidation (M)	1980.838	0.83796833	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	2	0	4	0				1													15.826	15.826	2	0.00048636	9664	DP690-4	108.72	66.721			0.93157	0.99808	NaN	1	0	Median	3869300	1727800	2141500	4159	886	3900	8308	20222;20223	20223	1344;1345	2	9606
FGESTTGFNFSFK	1	0	Unmodified	1467.667	0.66704513	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	10	0										1							19.79	19.79	2	0.0048785	16409	DP690-10	132.76	104.68			NaN	NaN	NaN	0	0	Median	0	0	0	4160	808	3901	8309	20224	20224		1	9606
FGEVISYQQLAALAGNPK	1	0	Unmodified	1904.9996	0.99961265	505	P16455	MGMT	Methylated-DNA--protein-cysteine methyltransferase	yes	yes	0	0	0	11	4							1								1		21.374	21.374	2	1.1743E-06	16150	DP690-7	140.39	140.39			0.51542	0.55841	NaN	1	0	Median	7132800	3912600	3220200	4161	505	3902	8310;8311	20225;20226;20227;20228;20229;20230;20231	20229		7	9606
FGEVVDCTLK	1	0	Unmodified	1166.5642	0.56415996	1243	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	13	0													1				15.617	15.617	2	0.0061288	9677	DP690-13	89.08	0			0.83528	0.95878	NaN	1	0	Median	92404000	49854000	42551000	4162	1243	3903	8312	20232;20233;20234	20232		3	9606
FGEYHKDDPSSFR	1	1	Unmodified	1583.7005	0.70047052	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	1	11	0											1						12.243	12.243	4	0.064888	5364	DP690-11	31.526	17.173			3.7102	4.6649	NaN	1	0	Median	35358000	10783000	24574000	4163	1332	3904	8313	20235	20235		1	9606
FGFDWESGR	0	1	Unmodified	1099.4723	0.47230849	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															18.84	18.84	2	0.00064621	12235	DP690-2	143.89	113.27			0.92409	0.96425	NaN	1	0	Median	5153000	2475700	2677300	4164	2418	3905	8314	20236;20237;20238;20239	20238		4	9606
FGFGFGGTGK	1	0	Unmodified	973.46577	0.46576654	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	11	0											1						17.6	17.6	2	0.0097529	13070	DP690-11	108.98	57.632			NaN	NaN	NaN	0	0	Median	31461000	0	31461000	4165	1768	3906	8315	20240;20241	20240		2	9606
FGFPEGSVELYAEK	1	0	Unmodified	1571.7508	0.75077476	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	15	0															1		19.339	19.339	2	0.00053107	14434	DP690-15	107.34	60.157			0.91677	1.0808	NaN	1	0	Median	14646000	7331600	7314600	4166	569	3907	8316	20242;20243;20244;20245	20245		4	9606
FGGEHIPNSPFHVLACDPLPHEEEPSEVPQLR	0	1	Unmodified	3633.7311	0.73106573	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										1							18.397	18.397	5	8.3069E-08	14426	DP690-10	75.887	75.887			0.5715	0.65299	NaN	1	0	Median	379920000	249500000	130420000	4167	1270	3908	8317	20246;20247	20247		2	9606
FGGEHVPNSPFQVTALAGDQPSVQPPLR	0	1	Unmodified	2944.4832	0.48315453	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.4	3.44		1							1	4	1		2			1	20.128	20.128	2;3	1.2222E-45	13705	DP690-9	219.01	196.81			0.51898	0.57524	13.884	6	0	Median	2191000000	1396100000	794900000	4168	549	3909	8318;8319;8320;8321;8322;8323;8324;8325;8326;8327	20248;20249;20250;20251;20252;20253;20254;20255;20256;20257;20258;20259;20260;20261;20262;20263;20264;20265;20266;20267;20268;20269;20270;20271;20272;20273;20274;20275;20276;20277;20278;20279	20275		32	9606
FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK	1	0	Unmodified	4091.0653	0.065347814	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	7.17	4.95	1	1					1	1	1							1	21.723	21.723	3	1.6064E-10	13480	DP690-1	89.681	73.342		+	NaN	NaN	NaN	0	0	Median	15460000	15460000	0	4169	44	3910	8328;8329;8330;8331;8332;8333	20280;20281;20282;20283;20284;20285;20286	20281		7	9606
FGGNPGGFGNQGGFGNSR	0	1	Unmodified	1725.7608	0.76077937	1185	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	12	4.54					2								1	1	1	2	15.472	15.472	2	5.2868E-50	9303	DP690-13	323.44	284.73			0.7684	0.83836	8.3572	3	0	Plateau	634710000	354310000	280400000	4170	1185	3911	8334;8335;8336;8337;8338;8339;8340	20287;20288;20289;20290;20291;20292;20293;20294;20295;20296;20297;20298;20299;20300;20301;20302;20303;20304;20305;20306	20287		20	9606
FGGSGSQVDSAR	0	1	Unmodified	1166.5316	0.53161428	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	3	0			2														10.664	10.664	2	0.0021298	2979	DP690-3	150.81	87.391			NaN	NaN	NaN	0	0	Median	0	0	0	4171	1190	3912	8341;8342	20307;20308	20307		2	9606
FGGVQELLNQQK	1	0	Unmodified	1359.7147	0.71466402	2496	Q9Y530	OARD1	O-acetyl-ADP-ribose deacetylase 1	yes	yes	0	0	0	16	0																1	17.437	17.437	2	0.031806	11731	DP690-16	66.962	66.962			0.91991	1.0776	NaN	1	0	Median	10530000	4924100	5605700	4172	2496	3913	8343	20309	20309		1	9606
FGHVDQENSPSFMFQGSSNTEFK	1	0	Unmodified	2619.1336	0.13361631	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	10	0										1							17.61	17.61	3	0.049511	13280	DP690-10	61.16	44.442			NaN	NaN	NaN	0	0	Median	0	0	0	4173	808	3914	8344	20310	20310		1	9606
FGHVDQENSPSFMFQGSSNTEFK	1	0	Oxidation (M)	2635.1285	0.12853093	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	1	0	9	0									1								16.446	16.446	3	0.0072303	10455	DP690-9	56.404	48.219			0.75749	0.96572	NaN	1	0	Median	8950900	4951000	3999900	4174	808	3914	8345	20311;20312	20312	1213	2	9606
FGIGLPILFLR	0	1	Unmodified	1244.7645	0.76451475	1257	Q14191	WRN	Werner syndrome ATP-dependent helicase	yes	yes	0	0	0	10	0										1							24.659	24.659	2	0.0011294	22745	DP690-10	105.57	105.57			1.0887	1.3153	NaN	1	0	Median	3570000	1940900	1629100	4175	1257	3915	8346	20313;20314;20315;20316	20316		4	9606
FGISEPGNQEK	1	0	Unmodified	1204.5724	0.57241646	808;16;446	P49792;O14715;Q99666;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	0	9	0									1								13.381	13.381	2	0.008752	6353	DP690-9	80.916	58.679			0.72141	0.88558	NaN	1	0	Median	28476000	16229000	12247000	4176	808;16;446	3916	8347	20317;20318	20317		2	9606
FGLFTPGSR	0	1	Unmodified	980.50797	0.50796571	680	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	6	0						1											17.462	17.462	2	0.0016161	11059	DP690-6	119.17	77.521			0.73456	0.82919	NaN	1	0	Median	20169000	11201000	8968100	4177	680	3917	8348	20319;20320;20321;20322	20321		4	9606
FGLGAEVGISTSR	0	1	Unmodified	1292.6725	0.67246486	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						17.228	17.228	2	0.028446	12711	DP690-11	67.153	42.277			0.72026	0.84537	NaN	1	0	Median	147820000	81143000	66678000	4178	891	3918	8349	20323	20323		1	9606
FGLGSVAGAVGATAVYPIDLVK	1	0	Unmodified	2104.1568	0.15684158	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	12	0												1					22.92	22.92	2	0.003269	19398	DP690-12	133.25	94.849			NaN	NaN	NaN	0	0	Median	2475300	2475300	0	4179	2359	3919	8350	20324;20325	20325		2	9606
FGLSAAEDITPR	0	1	Unmodified	1275.6459	0.64591575	2011	Q9BUH6	C9orf142	Protein PAXX	yes	yes	0	0	0	15	0															1		17.334	17.334	2	5.4524E-05	11841	DP690-15	128.91	102.12			0.96862	1.1254	NaN	1	0	Median	22933000	11557000	11376000	4180	2011	3920	8351	20326;20327;20328;20329	20326		4	9606
FGLYLPLFK	1	0	Unmodified	1096.6321	0.63210359	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	12	0												1					22.856	22.856	2	0.00078936	19259	DP690-12	133.47	93.823			0.86101	1.0455	NaN	1	0	Median	6511000	3435000	3076000	4181	2359	3921	8352	20330;20331;20332;20333	20331		4	9606
FGLYLPLFKPSVSTSK	2	0	Unmodified	1782.992	0.99200808	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	1	12	0												2					20.489	20.489	2;3	2.577E-07	16444	DP690-12	148.7	124.48			0.65779	0.75517	10.041	2	0	Median	129660000	74693000	54968000	4182	2359	3922	8353;8354	20334;20335;20336;20337;20338;20339	20334		6	9606
FGMFEFLSNHMR	0	1	Unmodified	1514.6799	0.6798752	869	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	14	0														1			20.629	20.629	3	0.050004	16354	DP690-14	89.9	77.105			0.88795	1.0833	NaN	1	0	Median	17873000	8928600	8944400	4183	869	3923	8355	20340	20340		0	9606
FGMFEFLSNHMR	0	1	2 Oxidation (M)	1546.6697	0.66970444	869	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	2	0	15	0															2		16.833	16.833	2;3	0.0024797	11143	DP690-15	77.387	64.406			0.80464	0.90004	4.8274	2	0	Median	199350000	112020000	87331000	4184	869	3923	8356;8357	20341;20342;20343;20344;20345;20346;20347	20343	1311;1312	7	9606
FGNAMLYGYQVGLFK	1	0	Oxidation (M)	1722.844	0.84396364	1058	P83111	LACTB	Serine beta-lactamase-like protein LACTB, mitochondrial	yes	yes	0	1	0	12	0												1					20.222	20.222	2	0.018772	16143	DP690-12	104.43	72.105			NaN	NaN	NaN	0	0	Median	0	0	0	4185	1058	3924	8358	20348	20348	1654	1	9606
FGNDVQHFK	1	0	Unmodified	1090.5196	0.51959303	1010	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	0	9.67	3.77							2								1		11.466	11.466	2;3	0.0022335	4055	DP690-7	112.41	93.635			0.87817	0.99599	0.40904	2	0	Median	32861000	17222000	15640000	4186	1010	3925	8359;8360;8361	20349;20350;20351;20352;20353;20354	20352		6	9606
FGNPLLVQDVESYDPVLNPVLNR	0	1	Unmodified	2597.349	0.34895246	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								23.531	23.531	2	1.8746E-37	18899	DP690-9	239.51	239.51			0.9692	1.2152	NaN	1	0	Median	6937100	3630700	3306400	4187	1264	3926	8362	20355;20356;20357;20358;20359	20357		5	9606
FGNTEQGFK	1	0	Unmodified	1026.4771	0.47705951	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.5	0.5									1	1							12.188	12.188	2	0.001342	4692	DP690-9	122.18	69.239			1.0673	1.3352	20.594	2	0	Median	145900000	62820000	83081000	4188	808	3927	8363;8364	20360;20361;20362;20363;20364	20364		5	9606
FGNVYLAR	0	1	Unmodified	938.4974	0.49740102	124;1861	O14965;Q9UQB9;Q96GD4	AURKA;AURKC;AURKB	Aurora kinase A;Aurora kinase C;Aurora kinase B	no	no	0	0	0	13	0													1				14.947	14.947	2	0.05871	8710	DP690-13	144.29	113.68			0.89513	1.0772	NaN	1	0	Median	85612000	43609000	42003000	4189	124;1861	3928	8365	20365	20365		0	9606
FGPIPLGSLGWK	1	0	Unmodified	1270.7074	0.7073938	1371	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	14	0														1			21.094	21.094	2	0.002054	16971	DP690-14	94.297	68.251			0.65905	0.79682	NaN	1	0	Median	30415000	18513000	11902000	4190	1371	3929	8366	20366;20367;20368;20369;20370;20371	20367		6	9606
FGPLTPELMVPR	0	1	Unmodified	1355.7271	0.72714296	711	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	14	0														1			20.093	20.093	2	0.0056891	15830	DP690-14	83.883	45.607			0.67958	0.82301	NaN	1	0	Median	42195000	25827000	16368000	4191	711	3930	8367	20372;20373;20374	20372		3	9606
FGQAATMEGIGAIGGTPPAFNR	0	1	Oxidation (M)	2178.0528	0.052787212	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	1	0	12	0												1					18.094	18.094	2	1.2554000000000002E-41	13214	DP690-12	257.46	229.6			0.69868	0.81489	NaN	1	0	Median	103480000	59117000	44362000	4192	1322	3931	8368	20375;20376;20377;20378;20379;20380	20375	2043	6	9606
FGQGGAGPVGGQGPR	0	1	Unmodified	1340.6585	0.65854613	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	10	1									1		1						12.055	12.055	2	7.3535E-07	5117	DP690-11	223.87	181.01			0.80338	0.91118	NaN	1	0	Median	232360000	129080000	103280000	4193	566	3932	8369;8370	20381;20382;20383;20384	20383		4	9606
FGQMLGSNMTEFHSQISK	1	0	2 Oxidation (M)	2072.9296	0.92956053	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	2	0	5.5	3.5		1							1								14.016	14.016	3	0.00025035	7169	DP690-9	92.439	71.601			1.2429	1.3851	9.0527	2	0	Median	30720000	14114000	16606000	4194	1264	3933	8371;8372	20385;20386;20387;20388;20389	20389	1910;1911	5	9606
FGSGMNMGR	0	1	Unmodified	955.40041	0.40040587	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11	0											1						13.156	13.156	2	0.0061021	6634	DP690-11	95.352	64.634			1.0008	1.2053	NaN	1	0	Median	79615000	40604000	39011000	4195	849	3934	8373	20390;20391;20392	20391		3	9606
FGTEELFKDEATDGGGDNKEGEDSSVIHYDDK	3	0	Unmodified	3503.5125	0.51246114	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	2	10	0										1							16.423	16.423	4	6.8423E-05	11713	DP690-10	66.399	66.399			0.76731	0.82293	NaN	1	0	Median	112430000	54038000	58396000	4196	1297	3935	8374	20393	20393		1	9606
FGVEQDVDMVFASFIR	0	1	Oxidation (M)	1874.8873	0.88728501	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	1	0	8	4				1								1					24.879	24.879	2	0.046729	19366	DP690-4	59.227	30.415			0.97557	1.0689	NaN	1	0	Median	663390	293960	369430	4197	488	3936	8375;8376	20394;20395	20395		2	9606
FGVPVIADGGIQNVGHIAK	1	0	Unmodified	1891.0316	0.031581485	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	4	0				1													18.094	18.094	3	1.2919E-05	12498	DP690-4	124.43	124.43			1.0695	1.1612	NaN	1	0	Median	24300000	11549000	12751000	4198	474	3937	8377	20396;20397;20398;20399	20397		4	9606
FGVSSSSSGPSQTLTSTGNFK	1	0	Unmodified	2074.9807	0.98072771	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	10	0										1							16.148	16.148	2	8.0325E-11	11260	DP690-10	201.76	98.37			NaN	NaN	NaN	0	0	Median	15515000	15515000	0	4199	807	3938	8378	20400	20400		1	9606
FGVVVVGVGR	0	1	Unmodified	987.58655	0.58655038	868	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	6	0						1											16.943	16.943	2	0.0073845	10475	DP690-6	87.323	42.601			1.0125	1.1527	NaN	1	0	Median	4831400	2487700	2343700	4200	868	3939	8379	20401;20402;20403;20404	20404		4	9606
FGYVDFESAEDLEK	1	0	Unmodified	1647.7304	0.73043325	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11.5	0.5											1	1					19.788	19.788	2	1.9069E-05	15570	DP690-12	126.71	120.71			1.0321	1.2252	15.273	2	0	Median	148420000	78737000	69679000	4201	534	3940	8380;8381	20405;20406;20407;20408;20409;20410;20411	20409		7	9606
FHALGPIYYR	0	1	Unmodified	1235.6451	0.64512789	2383	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	15	0															2		15.532	15.532	2;3	0.00014186	9391	DP690-15	121.09	96.627			0.80296	0.87025	NaN	1	0	Median	206050000	128100000	77943000	4202	2383	3941	8382;8383	20412;20413;20414;20415;20416;20417;20418;20419	20412		8	9606
FHDLLSQLDDQYSR	0	1	Unmodified	1735.8166	0.81656291	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	3	0			1														18.443	18.443	3	9.4111E-06	13112	DP690-3	143.05	118.86			0.85961	0.93485	NaN	1	0	Median	61680000	33462000	28218000	4203	724	3942	8384	20420;20421;20422;20423	20421		4	9606
FHFFEDQLR	0	1	Unmodified	1237.588	0.58800695	1410	Q56VL3	OCIAD2	OCIA domain-containing protein 2	yes	yes	0	0	0	14	3.46								2								6	16.973	16.973	2;3	1.5274E-05	10989	DP690-16	166.52	109.6			0.87177	0.89303	10.756	4	0	Linear	1078500000	570110000	508350000	4204	1410	3943	8385;8386;8387;8388;8389;8390;8391;8392	20424;20425;20426;20427;20428;20429;20430;20431;20432;20433;20434;20435;20436;20437;20438;20439;20440;20441;20442;20443;20444	20425		21	9606
FHFGDSLCTHK	1	0	Unmodified	1347.603	0.60300508	256	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	13	0													1				13.179	13.179	3	0.041698	6236	DP690-13	51.727	35.701			0.81608	0.94823	NaN	1	0	Median	22477000	10535000	11942000	4205	256	3944	8393	20445	20445		1	9606
FHGVLPDDEDALR	0	1	Unmodified	1482.7103	0.71030693	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	10	0										1							15.766	15.766	3	0.00063409	10655	DP690-10	75.479	58.753			0.69019	0.86316	NaN	1	0	Median	61353000	34172000	27181000	4206	1102	3945	8394	20446;20447	20446		2	9606
FHINQPALK	1	0	Unmodified	1066.5924	0.59236404	1677	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	0	14	0														1			13.155	13.155	2	0.00045942	6381	DP690-14	152.63	118.63			0.72079	0.86933	NaN	1	0	Median	94561000	54869000	39691000	4207	1677	3946	8395	20448;20449	20448		2	9606
FHMDSETHDPIDLQTK	1	0	Unmodified	1912.8625	0.86252683	2440	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	11	0											1						14.548	14.548	3	0.059374	8727	DP690-11	40.983	23.905			0.69766	0.84542	NaN	1	0	Median	69184000	37740000	31444000	4208	2440	3947	8396	20450	20450		1	9606
FHNLEGFLEEFADIAK	1	0	Unmodified	1878.9152	0.91521432	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	10	0										1							23.594	23.594	3	2.2329E-07	21457	DP690-10	124.68	105.74			0.75699	0.91872	NaN	1	0	Median	15742000	8974700	6767800	4209	1297	3948	8397	20451;20452;20453;20454	20452		4	9606
FHNLEGFLEEFADIAKEDQIK	2	0	Unmodified	2492.2224	0.22235496	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	1	10	0										1							23.127	23.127	4	1.887E-10	20879	DP690-10	156.08	125.49			0.65769	0.78074	NaN	1	0	Median	17695000	11698000	5997100	4210	1297	3949	8398	20455;20456;20457;20458	20456		4	9606
FHQFLVSETESGNISR	0	1	Unmodified	1849.8959	0.89587586	1141	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	3	0			2														15.335	15.335	2;3	0.00081707	9106	DP690-3	85.576	54.536			1.2003	1.3826	NaN	1	0	Median	18050000	8912200	9137400	4211	1141	3950	8399;8400	20459;20460;20461;20462;20463	20460		5	9606
FHTITTSYYR	0	1	Unmodified	1287.6248	0.62478638	937	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	15	0															1		13.419	13.419	2	0.0029738	6630	DP690-15	95.815	61.609			0.9039	1.0458	NaN	1	0	Median	14332000	6604300	7727600	4212	937	3951	8401	20464;20465	20464		2	9606
FHTSTYDLPGPEGAGPFEASQPADSAVPATSGK	1	0	Unmodified	3288.5211	0.52111576	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								17.614	17.614	3	1.538E-08	11903	DP690-9	108.71	90.827			0.58276	0.7454	NaN	1	0	Median	12242000	7535800	4706700	4213	1048	3952	8402	20466;20467;20468;20469;20470;20471	20470		6	9606
FIALANVGNPEK	1	0	Unmodified	1271.6874	0.68738664	1464	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	12	0												1					16.52	16.52	2	0.0013256	11090	DP690-12	101.97	69.224			0.79216	0.94452	NaN	1	0	Median	56439000	30094000	26344000	4214	1464	3953	8403	20472;20473;20474;20475	20474		4	9606
FICEQDHQNFLR	0	1	Unmodified	1605.7358	0.73581017	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			2														14.407	14.407	2;3	4.4464E-05	7889	DP690-3	124.12	107.01			1.2028	1.3227	14.598	2	0	Median	96728000	45094000	51635000	4215	1778	3954	8404;8405	20476;20477;20478	20477		3	9606
FICIYPAYLNNK	1	0	Unmodified	1514.7592	0.75917137	431	P09132	SRP19	Signal recognition particle 19 kDa protein	yes	yes	0	0	0	16	0																1	19.162	19.162	2	0.00044699	13697	DP690-16	141.52	141.52			0.80237	0.93653	NaN	1	0	Median	23581000	12407000	11174000	4216	431	3955	8406	20479;20480;20481;20482	20482		4	9606
FICIYPAYLNNKK	2	0	Unmodified	1642.8541	0.85413439	431	P09132	SRP19	Signal recognition particle 19 kDa protein	yes	yes	0	0	1	16	0																1	17.065	17.065	3	0.0090846	11112	DP690-16	65.695	65.695			0.75272	0.85721	NaN	1	0	Median	18793000	10539000	8254000	4217	431	3956	8407	20483;20484	20484		2	9606
FICTTGK	1	0	Unmodified	825.40547	0.40547447	57	CON__Q9U6Y5			yes	yes	0	0	0	7	0							1										14.226	14.226	2	0.042876	7307	DP690-7	110.61	23.745		+	NaN	NaN	NaN	0	0	Median	72571000	72571000	0	4218	57	3957	8408	20485	20485		1	
FICTTSAIQNR	0	1	Unmodified	1309.6449	0.6448699	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	4.6	3.2			4								1						13.763	13.763	2	0.0001063	6965	DP690-3	135.71	118.48			0.81362	0.95491	9.8566	2	0	Median	120740000	73861000	46882000	4219	873	3958	8409;8410;8411;8412;8413	20486;20487;20488;20489;20490;20491;20492;20493;20494;20495	20490		10	9606
FIDPLAKEEENVGIDITEPLYMQR	1	1	Oxidation (M)	2835.4001	0.40006133	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	1	1	11	0											1						21.297	21.297	3	0.0016475	18374	DP690-11	65.425	49.599			0.62403	0.77017	NaN	1	0	Median	22711000	15455000	7255200	4220	651	3959	8414	20496	20496	907	1	9606
FIDPLAKEEENVGIDITEPLYMQR	1	1	Unmodified	2819.4051	0.40514671	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	1	11	0											1						21.895	21.895	3	0.00026801	19095	DP690-11	102.66	89.37			0.75458	0.94566	NaN	1	0	Median	29374000	17630000	11744000	4221	651	3959	8415	20497;20498	20497		2	9606
FIEAGQYNNHLYGTSVQSVR	0	1	Unmodified	2282.108	0.10799391	1173	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	11	0											2						15.485	15.485	3	3.8395E-05	10069	DP690-11	146.67	96.292			NaN	NaN	NaN	0	0	Median	0	0	0	4222	1173	3960	8416;8417	20499;20500	20499		2	9606
FIEIAAR	0	1	Unmodified	818.46504	0.46503826	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	11	0											1						14.563	14.563	2	0.026037	8683	DP690-11	118.06	59.395			NaN	NaN	NaN	0	0	Median	242490000	242490000	0	4223	1078	3961	8418	20501;20502	20501		2	9606
FIGSPPGYVGHEEGGQLTK	1	0	Unmodified	1971.969	0.96904081	2082	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	0	0	0	12	0												1					14.484	14.484	3	0.0019082	8312	DP690-12	72.187	27.399			0.62039	0.73889	NaN	1	0	Median	41989000	22654000	19335000	4224	2082	3962	8419	20503	20503		1	9606
FIHQQPQSSSPVYGSSAK	1	0	Unmodified	1946.9486	0.94863972	786	P49023	PXN	Paxillin	yes	yes	0	0	0	4	0				1													11.591	11.591	3	4.7779E-10	4091	DP690-4	150.92	126.14			0.82323	0.88971	NaN	1	0	Median	29958000	16123000	13835000	4225	786	3963	8420	20504;20505;20506;20507	20506		4	9606
FIHVSHLNANIK	1	0	Unmodified	1391.7674	0.76736829	1371	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	14	0														1			12.723	12.723	3	0.00011988	5694	DP690-14	116.84	83.779			0.83911	1.0102	NaN	1	0	Median	106540000	55008000	51532000	4226	1371	3964	8421	20508;20509	20509		2	9606
FIIGESQAGEQPTQTVMPGQVMR	0	1	2 Oxidation (M)	2535.2098	0.20975814	2191	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	yes	yes	0	2	0	3	0			1														16.337	16.337	2	0.0061873	10439	DP690-3	118.71	87.711			NaN	NaN	NaN	0	0	Median	0	0	0	4227	2191	3965	8422	20510	20510	2673;2674	1	9606
FIIHAPPGEFNEVFNDVR	0	1	Unmodified	2100.0429	0.042874453	768	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	0	14	0														1			19.738	19.738	3	5.3045E-12	15234	DP690-14	175.26	148.11			0.62136	0.73885	NaN	1	0	Median	114930000	70484000	44443000	4228	768	3966	8423	20511;20512;20513;20514	20512		4	9606
FILLACDGLFK	1	0	Unmodified	1295.6948	0.6947802	2087	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	13	0													1				21.6	21.6	2	0.00028869	17446	DP690-13	120.31	74.334			0.94403	1.0948	NaN	1	0	Median	38405000	20982000	17423000	4229	2087	3967	8424	20515;20516;20517	20516		3	9606
FIMESGAK	1	0	Unmodified	881.43169	0.43168922	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	15	0															2		12.528	12.528	2	0.044885	5381	DP690-15	117.16	19.687			NaN	NaN	NaN	0	0	Median	0	0	0	4230	569	3968	8425;8426	20518;20519	20518		2	9606
FINLQPSTLTDKWYGESQK	2	0	Unmodified	2254.127	0.12699801	1677	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	1	14	0														1			18.571	18.571	3	1.2607E-05	13788	DP690-14	124.99	109.05			0.80292	0.89894	NaN	1	0	Median	69649000	41038000	28611000	4231	1677	3969	8427	20520;20521	20521		2	9606
FINMFAVLDELK	1	0	Unmodified	1438.753	0.75302336	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	10.2	0.829									1	1	2						24.957	24.957	2	0.00011143	22888	DP690-11	176.48	116.46			0.87787	1.0006	9.6237	3	0	Median	19219000	10871000	8348100	4232	1531;1849	3970	8428;8429;8430;8431	20522;20523;20524;20525;20526;20527;20528;20529;20530;20531	20527		10	9606
FINMFAVLDELK	1	0	Oxidation (M)	1454.7479	0.74793799	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	1	0	3	0			1														21.306	21.306	2	0.003111	16833	DP690-3	96.171	65.374			1.0007	1.0748	NaN	1	0	Median	16445000	8951400	7493500	4233	1531;1849	3970	8432	20532;20533;20534;20535	20534	2209	4	9606
FINPAIVSPYEAGILDK	1	0	Unmodified	1845.9877	0.98765098	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	10	0										1							20.697	20.697	2	0.00041656	17694	DP690-10	106.55	85.154			0.82346	1.0145	NaN	1	0	Median	52371000	25873000	26499000	4234	550	3971	8433	20536;20537;20538;20539;20540	20538		5	9606
FIPCSPFSDYVYK	1	0	Unmodified	1621.7487	0.74866627	1260	Q14195	DPYSL3	Dihydropyrimidinase-related protein 3	yes	yes	0	0	0	4	0				1													19.684	19.684	2	0.00766	14331	DP690-4	110.53	58.585			NaN	NaN	NaN	0	0	Median	0	0	0	4235	1260	3972	8434	20541	20541		1	9606
FIPGKPVLETR	1	1	Unmodified	1255.7289	0.72885752	2402	Q9UMS0	NFU1	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	yes	yes	0	0	1	7	0							1										13.5	13.5	3	0.053717	6530	DP690-7	50.484	33.317			0.51279	0.54047	NaN	1	0	Median	36275000	18935000	17341000	4236	2402	3973	8435	20542	20542		1	9606
FIPHENGVHSIDVK	1	0	Unmodified	1590.8154	0.8154407	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							12.591	12.591	3	0.00087573	4939	DP690-2	89.663	59.327			0.6235	0.73742	11.263	3	0	Median	299500000	186240000	113270000	4237	1270	3974	8436;8437;8438	20543;20544;20545;20546;20547;20548	20546		6	9606
FIPHENGVHTIDVK	1	0	Unmodified	1604.8311	0.83109076	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							12.75	12.75	3	0.0086877	6220	DP690-10	66.708	36.372			0.7905	0.92191	NaN	1	0	Median	319630000	171930000	147700000	4238	250	3975	8439	20549;20550;20551	20549		3	9606
FIQEIEHALGLGPAK	1	0	Unmodified	1621.8828	0.88279198	1816	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	11	0											1						20.725	20.725	3	0.010915	17633	DP690-11	86.291	47.143			NaN	NaN	NaN	0	0	Median	9225400	9225400	0	4239	1816	3976	8440	20552	20552		1	9606
FIQNTCNEVEHK	1	0	Unmodified	1517.6933	0.69327665	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									3								10.677	10.677	3	0.00014189	3024	DP690-9	114.71	68.428			0.71074	0.90388	NaN	1	0	Median	7919500	4746700	3172800	4240	1762	3977	8441;8442;8443	20553;20554;20555	20553		3	9606
FIQQTYPSGGEEQAQYCR	0	1	Unmodified	2160.9535	0.9534671	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			1														14.445	14.445	2	4.1645E-31	7874	DP690-3	303.04	289.01			0.8324	0.95814	NaN	1	0	Median	20981000	11436000	9545700	4241	1739	3978	8444	20556;20557;20558;20559	20557		4	9606
FIRPEGEITDYR	0	2	Unmodified	1494.7467	0.74669243	1821	Q96AZ6	ISG20	Interferon-stimulated gene 20 kDa protein	yes	yes	0	0	1	16	0																1	14.539	14.539	3	0.0014155	7987	DP690-16	89.44	69.014			0.80661	0.85221	NaN	1	0	Median	29016000	18493000	10524000	4242	1821	3979	8445	20560;20561	20561		2	9606
FISADVHGIWSR	0	1	Unmodified	1386.7044	0.70443369	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														16.829	16.829	3	0.00072465	11040	DP690-3	121.68	107.17			0.76279	0.87119	NaN	1	0	Median	24332000	13848000	10484000	4243	5	3980	8446	20562;20563;20564;20565	20562		4	9606
FISGSMAGATAQTFIYPMEVMK	1	0	3 Oxidation (M)	2427.116	0.11604067	1479	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	3	0	13	0													1				18.17	18.17	2	0.026309	13063	DP690-13	65.528	46.241			NaN	NaN	NaN	0	0	Median	10559000	10559000	0	4244	1479	3981	8447	20566	20566	2162;2163;2164	1	9606
FITHAPPGEFNEVFNDVR	0	1	Unmodified	2088.0065	0.0064889465	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	9.33	3.4						1		1						1			18.173	18.173	3	5.3045E-12	13253	DP690-14	175.26	157.36			0.63791	0.67655	4.0754	2	0	Median	1704999999.9999998	1071099999.9999999	633990000	4245	864	3982	8448;8449;8450	20567;20568;20569;20570;20571;20572;20573;20574;20575;20576;20577;20578	20570		12	9606
FKDLGEEHFK	2	0	Unmodified	1248.6139	0.61388734	37	CON__P02769			yes	yes	0	0	1	3	0			1														11.965	11.965	3	0.0002808	4618	DP690-3	136.49	55.572		+	NaN	NaN	NaN	0	0	Median	34620000	34620000	0	4246	37	3983	8451	20579;20580	20580		2	
FKDPLKDGEAK	3	0	Unmodified	1246.6558	0.65575216	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	2	12	0												1					10.96	10.96	3	0.00027547	3471	DP690-12	119.03	85.486			0.67537	0.73151	NaN	1	0	Median	47777000	24876000	22902000	4247	694	3984	8452	20581;20582;20583;20584	20582		4	9606
FKDPNCVGTVLASRPHTLDGR	1	2	Unmodified	2339.1804	0.18044734	1845	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	0	2	13	0													2				14.281	14.281	4;5	0.0062157	7768	DP690-13	68.625	54.863			0.80568	0.88662	10.755	2	0	Median	354590000	192400000	162190000	4248	1845	3985	8453;8454	20585;20586;20587	20587		3	9606
FKEAEEMHIK	2	0	Unmodified	1260.6173	0.61725816	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	1	4	0				1													10.903	10.903	3	0.0049528	3355	DP690-4	112.11	70.077			NaN	NaN	NaN	0	0	Median	38057000	0	38057000	4249	1784	3986	8455	20588;20589	20589		2	9606
FKEDLLNNGQPR	1	1	Unmodified	1429.7314	0.73137672	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	9.83	3.08			1								4	1					13.416	13.416	2;3	0.00016642	7150	DP690-11	114.76	94.983			0.73834	0.82361	16.939	4	0	Median	701560000	361530000	340030000	4250	1758	3987	8456;8457;8458;8459;8460;8461	20590;20591;20592;20593;20594;20595;20596;20597;20598;20599	20594		10	9606
FKEEVNHYSNEINK	2	0	Unmodified	1749.8322	0.83221298	332	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	1	10	0										1							11.648	11.648	3	0.00047795	4690	DP690-10	104.9	51.347			0.81601	1.0192	NaN	1	0	Median	79540000	37341000	42199000	4251	332	3988	8462	20600;20601;20602;20603;20604	20604		5	9606
FKEMELPAK	2	0	Oxidation (M)	1107.5634	0.56343168	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	9.5	0.5									1	1							10.706	10.706	2	0.041863	3338	DP690-10	91.265	35.735			0.86927	1.0336	NaN	1	0	Median	177230000	86497000	90730000	4252	1319	3989	8463;8464	20605;20606	20605	2018	2	9606
FKEQLTPSQIMSLEK	2	0	Oxidation (M)	1793.9233	0.92333617	1069	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	1	1	15	0															2		15.515	15.515	2;3	9.054E-15	9487	DP690-15	243.3	65.735			0.89696	1.0275	7.0624	2	0	Median	372320000	196120000	176190000	4253	1069	3990	8465;8466	20607;20608;20609;20610;20611;20612;20613;20614;20615;20616;20617;20618	20612	1664	12	9606
FKEQLTPSQIMSLEKEIMDK	3	0	2 Oxidation (M)	2426.2073	0.20729852	1069	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	2	2	15	0															2		17.885	17.885	3;4	1.9574E-05	12466	DP690-15	121.77	90.137			0.79463	0.86563	1.1388	2	0	Median	84820000	45469000	39351000	4254	1069	3991	8467;8468	20619;20620;20621;20622	20619	1664;1665	4	9606
FKETERPSIK	2	1	Unmodified	1233.6717	0.67173657	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	2	11	0											1						10.386	10.386	3	0.001197	2650	DP690-11	99.973	99.973			0.73095	0.88423	NaN	1	0	Median	608610000	345730000	262880000	4255	2190	3992	8469	20623	20623		1	9606
FKEVGEAFTILSDPK	2	0	Unmodified	1679.877	0.8770379	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	1	4	0				1													18.019	18.019	3	0.039314	12481	DP690-4	44.807	17.599			0.85686	0.87924	NaN	1	0	Median	5091600	2467300	2624400	4256	1946	3993	8470	20624;20625	20625		2	9606
FKGPFTDVVTTNLK	2	0	Unmodified	1565.8453	0.84534384	2293	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	1	15	0															2		17.149	17.149	2;3	5.1583E-06	11696	DP690-15	191.53	143.56			0.71801	0.82237	1.2841	2	0	Median	219830000	128390000	91435000	4257	2293	3994	8471;8472	20626;20627;20628;20629;20630;20631;20632	20632		7	9606
FKGQILMPNIGYGSNK	2	0	Oxidation (M)	1781.9134	0.91344018	1005	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	1	16	0																1	14.977	14.977	3	0.0036604	8519	DP690-16	71.781	54.499			0.86107	0.96497	NaN	1	0	Median	63186000	31750000	31436000	4258	1005	3995	8473	20633;20634	20634	1528	2	9606
FKIGDQEFDHLPALLEFYK	2	0	Unmodified	2309.1732	0.17321992	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	1	6	0						2											21.527	21.527	3;4	0.00017296	15684	DP690-6	98.077	73.789			0.83901	0.86734	18.538	2	0	Median	21185000	11689000	9496600	4259	753	3996	8474;8475	20635;20636;20637;20638;20639;20640;20641	20638		7	9606
FKMPEMHFK	2	0	2 Oxidation (M)	1225.5624	0.56238582	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	2	1	10	0										1							10.421	10.421	3	0.021014	2801	DP690-10	59.153	23.501			0.77534	0.80863	NaN	1	0	Median	841620000	460080000	381540000	4260	1145	3997	8476	20642;20643	20642	1763;1764	2	9606
FKMPEMHFK	2	0	Oxidation (M)	1209.5675	0.5674712	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	1	1	9.5	0.5									1	1							12.415	12.415	3	0.012064	5460	DP690-10	72.928	38.396			0.75862	0.8811	10.778	2	0	Median	246240000	133870000	112360000	4261	1145	3997	8477;8478	20644;20645;20646;20647	20644	1763;1764	4	9606
FKMPEMHFK	2	0	Unmodified	1193.5726	0.57255658	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	10	0										1							15.103	15.103	3	0.013938	9654	DP690-10	72.243	41.926			2.1666	2.6316	NaN	1	0	Median	114640000	38935000	75709000	4262	1145	3997	8479	20648;20649;20650	20648		3	9606
FKMPEMHFR	1	1	2 Oxidation (M)	1253.5685	0.56853383	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	2	1	9	0									1								10.362	10.362	3	0.073847	2597	DP690-9	50.353	16.593			NaN	NaN	NaN	0	0	Median	0	0	0	4263	1145	3998	8480	20651	20651		1	9606
FKMPEMNIK	2	0	Oxidation (M)	1152.5671	0.56713685	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	1	1	10	0										1							13.019	13.019	3	0.064715	6621	DP690-10	47.96	47.96			0.80609	0.9601	NaN	1	0	Median	20472000	10934000	9537400	4264	1145	3999	8481	20652	20652		1	9606
FKMPEMSIKPQK	3	0	2 Oxidation (M)	1494.7575	0.75745681	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	2	2	9	0									1								10.298	10.298	3	0.00042456	2479	DP690-9	103.43	64.555			0.63881	0.70106	NaN	1	0	Median	28916000	16741000	12176000	4265	1145	4000	8482	20653;20654;20655	20653	1765;1766	3	9606
FKPAYNPYTEPSMEVFSYHQGLK	2	0	Oxidation (M)	2748.2894	0.28938867	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	1	9.33	3.77				1								2					16.448	16.448	3;4	2.406E-05	11052	DP690-12	124.76	124.76			0.7002	0.76537	27.21	3	0	Median	571790000	339390000	232400000	4266	2434	4001	8483;8484;8485	20656;20657;20658;20659;20660;20661;20662;20663;20664;20665	20660	2873	10	9606
FKPAYNPYTEPSMEVFSYHQGLK	2	0	Unmodified	2732.2945	0.29447405	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	1	12	0												2					17.559	17.559	3;4	3.8046E-10	12624	DP690-12	151.22	121.25			0.79686	0.89946	20.414	2	0	Median	346600000	191790000	154810000	4267	2434	4001	8486;8487	20666;20667;20668;20669;20670;20671;20672;20673	20672		8	9606
FKPAYNPYTEPSMEVFSYHQGLKK	3	0	Oxidation (M)	2876.3844	0.38435169	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	2	12	0												1					15.319	15.319	4	0.0003705	9397	DP690-12	85.969	74.864			0.64299	0.69644	NaN	1	0	Median	48625000	29173000	19452000	4268	2434	4002	8488	20674;20675	20674	2873	2	9606
FKPLSDKIQQQR	2	1	Unmodified	1486.8256	0.82561145	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	2	14	0														1			11.049	11.049	3	0.0023963	3477	DP690-14	86.463	63.345			0.73515	0.88483	NaN	1	0	Median	16023000	9201300	6821200	4269	662	4003	8489	20676	20676		1	9606
FKPSSLPHPLEGSR	1	1	Unmodified	1550.8205	0.82052608	2279	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	1	3	0			1														13.008	13.008	3	0.0046402	5994	DP690-3	73.415	50.864			0.7129	0.79066	NaN	1	0	Median	24569000	13642000	10926000	4270	2279	4004	8490	20677;20678;20679;20680	20678		4	9606
FLAAGTHLGGTNLDFQMEQYIYK	1	0	Oxidation (M)	2632.2632	0.26317392	428	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	1	0	14	0														1			18.376	18.376	3	3.939E-10	13502	DP690-14	151.21	135.98			0.94967	1.076	NaN	1	0	Median	348560000	175120000	173440000	4271	428	4005	8491	20681;20682;20683;20684	20683	494	4	9606
FLAEEGFYK	1	0	Unmodified	1102.5335	0.53351176	767	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	10	0										1							16.637	16.637	2	0.031478	11950	DP690-10	73.248	48.325			0.78191	0.96539	NaN	1	0	Median	124520000	70931000	53587000	4272	767	4006	8492	20685	20685		1	9606
FLAFESNIGDLASILK	1	0	Unmodified	1736.9349	0.93488713	1175	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	11	0											1						24.124	24.124	2	6.8039E-07	21859	DP690-11	145.81	127.48			1.1905	1.4207	NaN	1	0	Median	3798100	1664500	2133600	4273	1175	4007	8493	20686;20687;20688;20689	20686		4	9606
FLALVCILR	0	1	Unmodified	1103.6525	0.65252146	2160	Q9HB90	RRAGC	Ras-related GTP-binding protein C	yes	yes	0	0	0	13	0													1				21.598	21.598	2	0.0066208	17505	DP690-13	93.262	64.113			0.85934	1.0134	NaN	1	0	Median	4052100	2041300	2010700	4274	2160	4008	8494	20690	20690		1	9606
FLAQILTAFPALR	0	1	Unmodified	1459.8551	0.85512067	911	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	11	0											1						23.811	23.811	2	0.015581	21446	DP690-11	100.48	42.887			NaN	NaN	NaN	0	0	Median	4082400	0	4082400	4275	911	4009	8495	20691	20691		1	9606
FLAVGLVDNTVR	0	1	Unmodified	1302.7296	0.7295858	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	9.5	0.5									1	1							18.678	18.678	2	0.00043972	13188	DP690-9	116.23	89.54			0.89118	1.0796	8.375	2	0	Median	276640000	146320000	130320000	4276	1329	4010	8496;8497	20692;20693;20694;20695;20696;20697;20698;20699;20700;20701	20699		10	9606
FLCIFLEK	1	0	Unmodified	1068.5678	0.56778878	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								20.017	20.017	2	0.042672	14879	DP690-9	129.68	74.152			0.83454	0.98943	NaN	1	0	Median	47437000	25555000	21882000	4277	1046	4011	8498	20702	20702		0	9606
FLDALELSQSPMLLELMTEVLCR	0	1	2 Oxidation (M)	2739.3533	0.35331083	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	9	0									2								24.72	24.72	2	1.2681E-09	20158	DP690-9	151.9	136.27			0.92225	1.1176	NaN	1	0	Median	2359800	1079300	1280400	4278	1046	4012	8499;8500	20703;20704;20705;20706;20707	20704	1601;1602	5	9606
FLDALELSQSPMLLELMTEVLCR	0	1	Oxidation (M)	2723.3584	0.35839621	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									1								28.189	28.189	2	6.3218E-24	23319	DP690-9	208.79	208.79			1.0762	1.2827	NaN	1	0	Median	1455100	1143900	311180	4279	1046	4012	8501	20708;20709;20710;20711;20712;20713	20711	1601;1602	6	9606
FLDGELPLDSFIDVYQSK	1	0	Unmodified	2085.0306	0.030638012	2148	Q9H9H4	VPS37B	Vacuolar protein sorting-associated protein 37B	yes	yes	0	0	0	14	0														1			24.224	24.224	2	0.038642	20699	DP690-14	105.19	62.215			NaN	NaN	NaN	0	0	Median	856810	856810	0	4280	2148	4013	8502	20714	20714		1	9606
FLDGIYVSEK	1	0	Unmodified	1169.5968	0.5968403	647	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	15	0															1		17.713	17.713	2	0.00017411	12248	DP690-15	131.62	95.169			0.92051	1.0047	NaN	1	0	Median	202520000	105980000	96536000	4281	647	4014	8503	20715;20716;20717	20716		3	9606
FLDLIPQDTLAVASFR	0	1	Unmodified	1804.9723	0.97233527	1219	Q13535	ATR	Serine/threonine-protein kinase ATR	yes	yes	0	0	0	10	0										1							23.192	23.192	2	0.0236	20949	DP690-10	103.88	55.877			NaN	NaN	NaN	0	0	Median	0	0	0	4282	1219	4015	8504	20718	20718		1	9606
FLDPLPTSGITPGATVLTASGQTVGK	1	0	Unmodified	2527.3534	0.35336913	1436	Q5T440	IBA57	Putative transferase CAF17, mitochondrial	yes	yes	0	0	0	10	4						1								1			20.965	20.965	2	9.742199999999999E-38	16810	DP690-14	222.51	201.86			0.65475	0.74944	9.5572	2	0	Median	23981000	13685000	10295000	4283	1436	4016	8505;8506	20719;20720;20721;20722;20723;20724;20725;20726;20727;20728	20720		10	9606
FLDVLELAEK	1	0	Unmodified	1175.6438	0.64379049	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9.5	0.5									1	1							21.246	21.246	2	0.00012294	16358	DP690-9	140.11	75.848			0.69847	0.86831	21.369	2	0	Median	22597000	13177000	9420100	4284	2411	4017	8507;8508	20729;20730;20731;20732	20731		4	9606
FLDWTELKR	1	1	Unmodified	1206.6397	0.63970816	323	O95425	SVIL	Supervillin	yes	yes	0	0	1	10	0										1							17.414	17.414	3	0.00051935	13035	DP690-10	110.41	78.65			0.79571	1.0086	NaN	1	0	Median	54863000	32509000	22355000	4285	323	4018	8509	20733;20734	20733		2	9606
FLEEFITPIVK	1	0	Unmodified	1334.7486	0.74858991	468	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	10	0										1							21.41	21.41	2	0.0090979	18679	DP690-10	96.143	71.367			1.0171	1.246	NaN	1	0	Median	29860000	15327000	14533000	4286	468	4019	8510	20735;20736;20737;20738	20737		4	9606
FLEETNCLYAAEGQR	0	1	Unmodified	1799.8148	0.81484835	1230	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	8.33	3.77			1								2						17.059	17.059	2	0.00030674	12363	DP690-11	142.08	69.433			NaN	NaN	NaN	0	0	Median	41883000	31775000	10108000	4287	1230	4020	8511;8512;8513	20739;20740;20741	20739		3	9606
FLEFTTLSAAELPGSSAVR	0	1	Unmodified	1995.0313	0.031306714	1289	Q14699	RFTN1	Raftlin	yes	yes	0	0	0	11	0											1						21.333	21.333	2	0.0019757	18439	DP690-11	107.93	65.684			NaN	NaN	NaN	0	0	Median	11745000	11745000	0	4288	1289	4021	8514	20742;20743	20742		2	9606
FLEGTSCIAGVFVDATK	1	0	Unmodified	1813.892	0.89203604	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.3	0.881									1	4	1	1					21.17	21.17	2	3.5572E-18	18261	DP690-10	226.42	178.52			0.84428	1.0107	NaN	1	0	Median	247870000	133780000	114100000	4289	1319	4022	8515;8516;8517;8518;8519;8520;8521	20744;20745;20746;20747;20748;20749;20750;20751;20752;20753;20754;20755;20756;20757	20744		14	9606
FLEIGKFDLSQNHPLGMAIFLK	2	0	Oxidation (M)	2533.3403	0.34030203	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	1	2	0		1															20.285	20.285	4	0.0094261	13852	DP690-2	55.267	37.367			0.75072	0.77935	NaN	1	0	Median	6209200	3553000	2656200	4290	789	4023	8522	20758	20758	1178	1	9606
FLEQQNQVLQTK	1	0	Unmodified	1474.778	0.77799256	369;44;25;56	P35908;CON__P35908v2;CON__P35908;Q7Z794;CON__Q7Z794;CON__Q6NXH9;P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253;CON__Q9R0H5	KRT2;KRT77;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 1	no	no	0	0	0	8.6	4.74	1	1	1	1	1	1		1	1	1	1	1	1	1	1	1	14.676	14.676	2	6.558300000000001E-25	8167	DP690-3	261.35	125.81		+	NaN	NaN	NaN	0	0	Median	1697799999.9999998	1697799999.9999998	0	4291	44;369;25;56	4024	8523;8524;8525;8526;8527;8528;8529;8530;8531;8532;8533;8534;8535;8536;8537	20759;20760;20761;20762;20763;20764;20765;20766;20767;20768;20769;20770;20771;20772;20773;20774;20775;20776;20777;20778;20779;20780;20781;20782;20783;20784;20785;20786;20787;20788;20789;20790;20791;20792	20781		34	9606
FLEQSMDIEDLK	1	0	Oxidation (M)	1482.6912	0.69121097	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	1	0	10	0										1							16.953	16.953	2	0.010957	12369	DP690-10	81.525	67.106			0.99181	1.2237	NaN	1	0	Median	88108000	44545000	43563000	4292	311	4025	8538	20793;20794	20793	318	2	9606
FLEQSMDIEDLK	1	0	Unmodified	1466.6963	0.69629635	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	0	10	0										1							18.934	18.934	2	5.7736E-05	15251	DP690-10	129.16	94.464			0.72077	0.88904	NaN	1	0	Median	93119000	47317000	45802000	4293	311	4025	8539	20795;20796	20795		2	9606
FLEQVHQLYDDSFPMEIR	0	1	Oxidation (M)	2282.0678	0.067768574	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	1	0	3	0			1														19.889	19.889	3	0.00030518	15011	DP690-3	94.281	76.985			0.83924	0.94727	NaN	1	0	Median	30441000	16857000	13584000	4294	724	4026	8540	20797;20798;20799;20800	20800	1065	4	9606
FLESPDFQPNIAK	1	0	Unmodified	1504.7562	0.75619449	1291	Q14738;Q13362	PPP2R5D;PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	yes	no	0	0	0	8	4				1								1					17.678	17.678	2	5.0834E-05	11904	DP690-4	126.03	80.024			0.77678	0.89366	9.6657	2	0	Median	29312000	15966000	13346000	4295	1291	4027	8541;8542	20801;20802	20802		2	9606
FLESTDSFNNELKR	1	1	Unmodified	1698.8213	0.82131394	1808	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	1	13	0													1				15.558	15.558	3	2.4106E-05	9542	DP690-13	182.25	148.49			0.619	0.69874	NaN	1	0	Median	102600000	61283000	41319000	4296	1808	4028	8543	20803;20804;20805	20803		3	9606
FLEVDEYPEHIK	1	0	Unmodified	1517.7402	0.74021007	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	2.5	0.5		1	1														15.855	15.855	3	0.0072289	9808	DP690-3	92.247	42.967			NaN	NaN	NaN	0	0	Median	26273000	0	26273000	4297	1887	4029	8544;8545	20806;20807;20808	20807		3	9606
FLEVIKPFCVILPEIQKPER	2	1	Unmodified	2454.3709	0.37087387	951	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	2	14	0														1			20.662	20.662	4	0.0022838	16512	DP690-14	78.088	55.856			0.63476	0.76401	NaN	1	0	Median	45478000	25925000	19553000	4298	951	4030	8546	20809;20810	20810		2	9606
FLEVQYLTGGLIEPDTPGR	0	1	Unmodified	2104.0841	0.084070566	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.7	1.7									1	1			1				22.128	22.128	2	2.9721000000000003E-33	19631	DP690-10	269.05	227.81			0.70897	0.88112	NaN	1	0	Median	88599000	50720000	37879000	4299	1319	4031	8547;8548;8549	20811;20812;20813;20814;20815;20816	20813		6	9606
FLEVQYLTGGLIEPDTPGRVPLDEALQR	0	2	Unmodified	3125.6397	0.63971475	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							22.064	22.064	3	5.1886E-12	19527	DP690-10	150.36	134.05			0.64182	0.72926	14.235	2	0	Median	139130000	79066000	60065000	4300	1319	4032	8550;8551	20817;20818;20819;20820;20821;20822;20823;20824	20818		8	9606
FLFDSVSSQNVGLR	0	1	Unmodified	1567.7995	0.79945628	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			1														19.586	19.586	2	9.0279E-10	14518	DP690-3	210.64	182.87			1.2408	1.4026	NaN	1	0	Median	29577000	18493000	11084000	4301	82	4033	8552	20825;20826;20827;20828	20825		4	9606
FLFENQTPAHVYYR	0	1	Unmodified	1783.8682	0.86820455	133	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	11	0											1						16.776	16.776	3	5.8672E-05	12041	DP690-11	118.87	86.05			0.80987	0.97534	NaN	1	0	Median	79383000	41798000	37585000	4302	133	4034	8553	20829;20830	20830		2	9606
FLFSLFGQK	1	0	Unmodified	1085.591	0.59096706	1187	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	9.8	3.87						1	2							1	1		21.821	21.821	2	0.00010979	17902	DP690-14	172.14	113.36			0.83576	1.0051	3.8868	3	0	Median	66470000	35006000	31464000	4303	1187	4035	8554;8555;8556;8557;8558	20831;20832;20833;20834;20835;20836;20837;20838;20839	20833		9	9606
FLGLLYELEENTDK	1	0	Unmodified	1682.8403	0.84031805	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.5	0.5									1	1							22.704	22.704	2	5.4544E-05	18030	DP690-9	159.83	159.83			0.95642	1.1742	13.527	2	0	Median	20074000	10196000	9877800	4304	808	4036	8559;8560	20840;20841;20842;20843;20844;20845	20845		6	9606
FLGLLYELEENTDKAVECYR	1	1	Unmodified	2461.1835	0.18352661	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	1	9	0									1								23.175	23.175	3	0.00069135	18589	DP690-9	82.709	70.516			1.0699	1.2408	NaN	1	0	Median	3496200	1772600	1723600	4305	808	4037	8561	20846;20847	20846		2	9606
FLHCTEKDLIPYLEK	2	0	Unmodified	1904.9706	0.97062071	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	10	0										1							16.909	16.909	4	0.0010107	12293	DP690-10	84.173	66.307			NaN	NaN	NaN	0	0	Median	133540000	79482000	54060000	4306	269	4038	8562	20848	20848		1	9606
FLHKHDLDLICR	1	1	Unmodified	1565.8137	0.81366656	963;683	P62136;P36873	PPP1CA;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	1	14	0														1			13.457	13.457	3	2.16E-05	6787	DP690-14	136.7	117.09			0.85321	0.97676	NaN	1	0	Median	151570000	85784000	65787000	4307	963;683	4039	8563	20849;20850;20851;20852	20852		4	9606
FLIATGERPR	0	2	Unmodified	1158.6509	0.65094155	1374	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	1	4	0				1													13.182	13.182	3	0.00031058	6170	DP690-4	147.51	106.48			0.79382	0.83176	NaN	1	0	Median	3408100	1746300	1661800	4308	1374	4040	8564	20853;20854;20855;20856	20855		4	9606
FLICTDVAAR	0	1	Unmodified	1164.5961	0.59612879	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	7	4			1								1						16.897	16.897	2	0.0017924	12199	DP690-11	103.56	40.084			1.0118	1.1872	11.702	2	0	Median	95208000	39469000	55740000	4309	1768	4041	8565;8566	20857;20858;20859;20860;20861	20859		5	9606
FLILGDIDGLMDEFSK	1	0	Unmodified	1811.9015	0.90153809	912	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	11	0											1						25.952	25.952	2	0.00071555	23937	DP690-11	100.93	70.996			1.097	1.2703	NaN	1	0	Median	1780900	850290	930580	4310	912	4042	8567	20862	20862		1	9606
FLILPDMLK	1	0	Oxidation (M)	1104.6253	0.62530365	981	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	1	0	12	4								1								1	19.617	19.617	2	0.0099279	14104	DP690-16	95.815	46.392			0.80931	0.9063	8.6005	2	0	Median	118260000	66962000	51298000	4311	981	4043	8568;8569	20863;20864;20865;20866	20863	1498	4	9606
FLIPDYNDEIR	0	1	Unmodified	1393.6878	0.68778057	260	O75525	KHDRBS3	KH domain-containing, RNA-binding, signal transduction-associated protein 3	yes	yes	0	0	0	13	0													1				19.255	19.255	2	0.010204	14543	DP690-13	78.098	39.293			0.51911	0.63459	NaN	1	0	Median	36118000	23515000	12603000	4312	260	4044	8570	20867;20868	20867		2	9606
FLIPNASQAESK	1	0	Unmodified	1303.6772	0.67721588	1014	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	11	4							1								1		15.768	15.768	2	0.00053951	9195	DP690-7	121.6	80.177			0.92386	1.0383	11.764	2	0	Median	95660000	47718000	47942000	4313	1014	4045	8571;8572	20869;20870;20871;20872	20872		4	9606
FLIQNVLR	0	1	Unmodified	1001.6022	0.60220045	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	7.67	3.4			1						1		1						18.713	18.713	2	0.01982	13325	DP690-9	111.28	71.736			1.0623	1.1981	NaN	1	0	Median	31936000	15429000	16507000	4314	721	4046	8573;8574;8575	20873;20874;20875	20875		2	9606
FLISLTNPHDR	0	1	Unmodified	1311.6935	0.69353465	1772	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	2	0		1															16.132	16.132	3	0.078733	9028	DP690-2	40.015	13.266			1.6689	1.7476	NaN	1	0	Median	5801900	2668300	3133700	4315	1772	4047	8576	20876	20876		1	9606
FLIVAHDDGR	0	1	Unmodified	1141.588	0.58800695	1366	Q16658	FSCN1	Fascin	yes	yes	0	0	0	4	0				1													13.545	13.545	3	0.0005667	6664	DP690-4	104.42	65.641			1.3639	1.5744	NaN	1	0	Median	2518400	1204600	1313800	4316	1366	4048	8577	20877;20878	20878		2	9606
FLLADNLYCK	1	0	Unmodified	1255.6271	0.62709457	952	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	0	0	7	0							1										18.477	18.477	2	0.00016227	12667	DP690-7	133.58	81.327			0.97183	1.0483	NaN	1	0	Median	37443000	19720000	17724000	4317	952	4049	8578	20879;20880	20879		2	9606
FLLDAVFAK	1	0	Unmodified	1022.5801	0.58006802	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	3	0			1														21.144	21.144	2	0.014336	16508	DP690-3	106.36	53.673			NaN	NaN	NaN	0	0	Median	6479100	0	6479100	4318	1887	4050	8579	20881	20881		1	9606
FLLEHFTDEQR	0	1	Unmodified	1433.6939	0.69392858	731	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	10	0										1							16.629	16.629	3	0.0017913	11963	DP690-10	95.483	56.903			0.80236	0.99863	NaN	1	0	Median	79311000	35809000	43502000	4319	731	4051	8580	20882;20883	20883		2	9606
FLLESFNNDR	0	1	Unmodified	1253.6041	0.60405094	1229	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	3	0			2														18.202	18.202	2	0.0066362	12876	DP690-3	88.37	44.928			1.0265	1.1631	NaN	1	0	Median	10498000	3066600	7431000	4320	1229	4052	8581;8582	20884;20885;20886	20884		3	9606
FLLHEPIVNK	1	0	Unmodified	1208.6917	0.69174374	94	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	12	0												1					14.798	14.798	3	0.00097009	8769	DP690-12	89.679	68.841			3.0678	3.6211	NaN	1	0	Median	83819000	30959000	52860000	4321	94	4053	8583	20887;20888	20887		2	9606
FLLLQGLVEK	1	0	Unmodified	1158.7012	0.70124579	1722	Q8TED0	UTP15	U3 small nucleolar RNA-associated protein 15 homolog	yes	yes	0	0	0	12	0												1					20.992	20.992	2	0.0016953	17098	DP690-12	104.2	79.681			0.96173	1.1672	NaN	1	0	Median	11974000	6013000	5961400	4322	1722	4054	8584	20889;20890;20891	20889		3	9606
FLLTGLLSGLPAPQFAIR	0	1	Unmodified	1913.1139	0.11385455	2060	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	11	0											1						25.045	25.045	2	0.00055387	22967	DP690-11	100.19	92.846			0.60243	0.72163	NaN	1	0	Median	3130400	1899100	1231300	4323	2060	4055	8585	20892;20893;20894	20892		3	9606
FLLVGQTMPTLLDEDLTK	1	0	Oxidation (M)	2049.0704	0.070394336	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	1	0	2	0		1															21.46	21.46	2	9.6813E-10	15076	DP690-2	157.56	157.56			0.89858	0.89451	NaN	1	0	Median	3594600	1808100	1786500	4324	2418	4056	8586	20895;20896;20897;20898;20899	20897	2841	5	9606
FLLVGQTMPTLLDEDLTKDGIEALSSR	1	1	Oxidation (M)	2977.5318	0.53180378	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	1	1	2	0		1															22.658	22.658	3	0.00099713	16347	DP690-2	88.504	57.92			NaN	NaN	NaN	0	0	Median	985890	985890	0	4325	2418	4057	8587	20900;20901;20902	20902	2841	3	9606
FLLVLADGLR	0	1	Unmodified	1115.6703	0.67028001	2138	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	4	0				1													21.15	21.15	2	0.0028011	16000	DP690-4	96.948	29.916			0.84835	0.9729	NaN	1	0	Median	1959300	1011000	948340	4326	2138	4058	8588	20903;20904;20905	20905		3	9606
FLLVYLHGDDHQDSDEFCR	0	1	Unmodified	2365.0433	0.043344738	1834	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	13	0													1				17.696	17.696	4	0.00065979	12420	DP690-13	77.506	67.181			0.86246	1.0516	NaN	1	0	Median	41594000	19511000	22082000	4327	1834	4059	8589	20906	20906		1	9606
FLMSLVNQVPK	1	0	Oxidation (M)	1290.7006	0.70059386	80	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	1	0	13	0													1				17.366	17.366	2	0.0008224	12034	DP690-13	113.66	79.472			1.1654	1.3506	NaN	1	0	Median	40588000	20963000	19625000	4328	80	4060	8590	20907;20908	20908	84	2	9606
FLNDTTKPVGLLLSER	1	1	Unmodified	1801.9938	0.993799	2300	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	1	6	0						1											18.224	18.224	3	2.2308E-06	12024	DP690-6	132.81	132.81			0.85304	0.956	NaN	1	0	Median	7141600	3297400	3844200	4329	2300	4061	8591	20909;20910;20911;20912	20909		4	9606
FLNEFFLNVK	1	0	Unmodified	1269.6758	0.67575932	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														21.179	21.179	2	0.00017935	16507	DP690-3	130.75	103.63			0.897	0.95529	NaN	1	0	Median	27578000	14317000	13261000	4330	797	4062	8592	20913;20914	20913		2	9606
FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR	0	1	Unmodified	3626.6397	0.63972734	165	O43169	CYB5B	Cytochrome b5 type B	yes	yes	0	0	0	16	0																1	20.454	20.454	4	2.1226E-08	15180	DP690-16	101.86	101.86			0.82275	0.96663	NaN	1	0	Median	3366800	2020700	1346100	4331	165	4063	8593	20915;20916;20917;20918	20915		4	9606
FLPEILALQR	0	1	Unmodified	1198.7074	0.7073938	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								20.481	20.481	2	0.013859	15420	DP690-9	78.264	78.264			0.74272	0.92715	NaN	1	0	Median	3762700	2153300	1609500	4332	1453	4064	8594	20919	20919		1	9606
FLPFLDMFQK	1	0	Unmodified	1284.6577	0.65766641	1540	Q7Z3J2	C16orf62	UPF0505 protein C16orf62	yes	yes	0	0	0	11	0											1						23.983	23.983	2	0.03335	21678	DP690-11	93.429	42.362			NaN	NaN	NaN	0	0	Median	0	0	0	4333	1540	4065	8595	20920	20920		1	9606
FLPGYVGGIQEGAVTPAGVVNK	1	0	Unmodified	2172.1579	0.15790421	2315	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	11	2.16									1	1				1			18.931	18.931	2	1.1022E-10	15276	DP690-10	160.63	125.71			0.57392	0.69709	58.798	3	0	Plateau	110460000	62286000	48176000	4334	2315	4066	8596;8597;8598	20921;20922;20923;20924;20925;20926;20927;20928;20929;20930	20922		10	9606
FLPREEGPYEVEVTYDGVPVPGSPFPLEAVAPTKPSK	2	1	Unmodified	3998.0353	0.035336044	549	P21333	FLNA	Filamin-A	yes	yes	0	0	2	9.5	0.5									1	1							20.279	20.279	4	4.4229E-13	17162	DP690-10	123.49	123.49			0.37515	0.42809	NaN	1	0	Median	208050000	148810000	59241000	4335	549	4067	8599;8600	20931;20932;20933;20934;20935	20933		5	9606
FLPVFDIVIHR	0	1	Unmodified	1354.7761	0.77614207	2389	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	0	0	0	10	0										1							21.017	21.017	3	0.00035248	18166	DP690-10	106.4	87.156			0.6408	0.79793	NaN	1	0	Median	21596000	10869000	10727000	4336	2389	4068	8601	20936;20937	20936		2	9606
FLQDYFDGNLK	1	0	Unmodified	1358.6507	0.65066678	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	4	0				1													19.288	19.288	2	0.00014558	13839	DP690-4	166.09	112.12			0.89931	0.97258	NaN	1	0	Median	8202500	4407000	3795500	4337	623	4069	8602	20938;20939;20940	20938		3	9606
FLQDYFDGNLKR	1	1	Unmodified	1514.7518	0.75177781	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	1	8	4				1								1					17.223	17.223	3	2.3473E-05	12203	DP690-12	134.13	113.55			0.79073	0.94056	9.623	2	0	Median	86522000	47408000	39114000	4338	623	4070	8603;8604	20941;20942;20943;20944	20941		4	9606
FLQEEAEK	1	0	Unmodified	992.48148	0.48147619	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0										1							11.874	11.874	2	0.038401	4951	DP690-10	101.6	21.888			NaN	NaN	NaN	0	0	Median	88825000	88825000	0	4339	1319	4071	8605	20945;20946	20945		2	9606
FLQEFYQDDELGKK	2	0	Unmodified	1758.8465	0.84646606	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	1	11	0											1						16.816	16.816	3	0.0007706	12075	DP690-11	126.1	78.796			NaN	NaN	NaN	0	0	Median	48494000	0	48494000	4340	653	4072	8606	20947;20948	20947		2	9606
FLQESNVLYQHNLR	0	1	Unmodified	1759.9006	0.90056731	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	3	0			2														15.602	15.602	3	2.7703E-05	9452	DP690-3	152.96	152.96			0.74492	0.81852	NaN	1	0	Median	50699000	27466000	23233000	4341	708	4073	8607;8608	20949;20950;20951	20949		3	9606
FLQFVTGTSK	1	0	Unmodified	1126.6023	0.60226003	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															17.101	17.101	2	0.012079	10225	DP690-2	80.755	31.332			1.0999	1.1058	NaN	1	0	Median	7770600	3592900	4177700	4342	1555	4074	8609	20952;20953	20952		2	9606
FLQQEQSVFR	0	1	Unmodified	1280.6513	0.65133548	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								15.991	15.991	2	9.8981E-05	9862	DP690-9	144.09	144.09			0.71901	0.89787	NaN	1	0	Median	13218000	7378200	5839400	4343	2217	4075	8610	20954	20954		1	9606
FLQQMQQEQIIQVK	1	0	Oxidation (M)	1775.924	0.92400487	717	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	1	0	12	0												1					15.957	15.957	2	8.3261E-05	10377	DP690-12	136.81	136.81			1.0271	1.2418	NaN	1	0	Median	14347000	7053200	7294200	4344	717	4076	8611	20955;20956	20955	1047	2	9606
FLREPVVTPQDLEGPGR	0	2	Unmodified	1909.0058	0.005760665	1457	Q66K74	MAP1S	Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain	yes	yes	0	0	1	11	0											1						16.652	16.652	3	0.00091595	11849	DP690-11	73.11	60.629			0.7433	0.91629	NaN	1	0	Median	68546000	46606000	21940000	4345	1457	4077	8612	20957	20957		1	9606
FLSDPQVHTVLVER	0	1	Unmodified	1638.873	0.87295558	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								15.832	15.832	3	0.0017984	9617	DP690-9	80.96	59.952			0.69969	0.85573	NaN	1	0	Median	26029000	14050000	11979000	4346	1264	4078	8613	20958;20959;20960;20961	20961		4	9606
FLSFFPVNR	0	1	Unmodified	1125.5971	0.59711507	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								20.456	20.456	2	0.062524	15413	DP690-9	63.565	33.061			1.1963	1.4968	NaN	1	0	Median	4483700	1918300	2565400	4347	2272	4079	8614	20962;20963	20962		2	9606
FLSNGHVTIPGQQDKDMFQETMEAMR	1	1	3 Oxidation (M)	3057.363	0.36304067	668	P35579	MYH9	Myosin-9	yes	yes	0	3	1	2	0		1															14.842	14.842	4	0.0018739	7565	DP690-2	57.145	44.654			1.0065	0.99083	NaN	1	0	Median	15326000	7151000	8175100	4348	668	4080	8615	20964;20965;20966;20967	20967	946;947;948	4	9606
FLSNGHVTIPGQQDKDMFQETMEAMR	1	1	2 Oxidation (M)	3041.3681	0.36812605	668	P35579	MYH9	Myosin-9	yes	yes	0	2	1	2	0		1															16.203	16.203	4	0.006584	9139	DP690-2	51.232	34.61			0.80759	0.79499	NaN	1	0	Median	6171500	3084800	3086700	4349	668	4080	8616	20968	20968	946;947;948	1	9606
FLSPEFIPR	0	1	Unmodified	1104.5968	0.59678072	792	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	0	0	0	15	0															2		18.429	18.429	2	0.021288	13229	DP690-15	122.18	72.734			NaN	NaN	NaN	0	0	Median	0	0	0	4350	792	4081	8617;8618	20969;20970	20970		2	9606
FLSQIESDCLALLQVR	0	1	Unmodified	1890.9873	0.98733341	861	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	11	0											1						21.932	21.932	2	0.0010254	19156	DP690-11	146.5	90.416			NaN	NaN	NaN	0	0	Median	0	0	0	4351	861	4082	8619	20971	20971		1	9606
FLSQPFQVAEVFTGHMGK	1	0	Oxidation (M)	2037.9982	0.99823245	392	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	13	0													1				19.855	19.855	3	0.00013579	15262	DP690-13	107.62	81.149			1.0348	1.2003	NaN	1	0	Median	37749000	20417000	17332000	4352	392	4083	8620	20972;20973;20974	20972	419	3	9606
FLSSAAAVSK	1	0	Unmodified	979.53385	0.53384611	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															12.762	12.762	2	0.0020205	4969	DP690-2	102.07	56.051			1.3589	1.3792	NaN	1	0	Median	42061000	17597000	24464000	4353	602	4084	8621	20975;20976;20977;20978;20979	20975		5	9606
FLSTLLDSFSSSR	0	1	Unmodified	1458.7355	0.73545904	292	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	10	0										1							21.327	21.327	2	0.061067	18605	DP690-10	57.149	0.71724			1.0858	1.3559	NaN	1	0	Median	29116000	14401000	14715000	4354	292	4085	8622	20980	20980		1	9606
FLSTTIVYPK	1	0	Unmodified	1167.654	0.65396125	1661	Q8N5W9	FAM101B	Filamin-interacting protein FAM101B	yes	yes	0	0	0	15	0															1		16.989	16.989	2	0.043284	11412	DP690-15	90.601	38.198			NaN	NaN	NaN	0	0	Median	0	0	0	4355	1661	4086	8623	20981	20981		1	9606
FLTEVLLPIVK	1	0	Unmodified	1270.7901	0.7900608	2389	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	0	0	0	10	0										1							21.905	21.905	2	0.0044612	19326	DP690-10	89.247	89.247			0.71408	0.87009	NaN	1	0	Median	21610000	12314000	9295900	4356	2389	4087	8624	20982;20983	20982		2	9606
FLTLPPVLHLQLMR	0	1	Oxidation (M)	1692.9749	0.97491823	1804	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	1	0	3	0			1														20.601	20.601	3	0.00039989	15843	DP690-3	101.35	101.35			1.6337	1.8606	NaN	1	0	Median	12334000	5163400	7171100	4357	1804	4088	8625	20984;20985;20986;20987	20984	2380	4	9606
FLVLDEADGLLSQGYSDFINR	0	1	Unmodified	2371.1696	0.16959111	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	11	0											1						25.322	25.322	2	4.6204E-48	23239	DP690-11	288.29	255.1			0.85079	1.051	NaN	1	0	Median	10479000	5982700	4496300	4358	1768	4089	8626	20988;20989;20990;20991;20992	20990		5	9606
FLVLPSLGR	0	1	Unmodified	1000.607	0.60695147	1601	Q8IV63	VRK3	Inactive serine/threonine-protein kinase VRK3	yes	yes	0	0	0	13	0													1				19.703	19.703	2	0.022965	15085	DP690-13	76.478	47.329			0.90773	1.0902	NaN	1	0	Median	7614400	4118800	3495600	4359	1601	4090	8627	20993;20994	20993		2	9606
FLVSQNVDGLHVR	0	1	Unmodified	1482.7943	0.79431133	1664	Q8N6T7	SIRT6	NAD-dependent protein deacetylase sirtuin-6	yes	yes	0	0	0	14	0														1			15.741	15.741	3	0.00010893	9914	DP690-14	96.756	71.741			0.72666	0.87642	NaN	1	0	Median	64162000	39101000	25061000	4360	1664	4091	8628	20995;20996;20997;20998;20999	20999		5	9606
FMDASALTGIPLPLIK	1	0	Oxidation (M)	1701.9375	0.93752967	580	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	1	0	10	4						1								1			22.21	22.21	2	0.00050017	18424	DP690-14	111.63	94.036			0.63787	0.72272	33.354	2	0	Median	8107700	5089800	3017900	4361	580	4092	8629;8630	21000;21001;21002	21000	761	3	9606
FMDDIAALVSTIASDIVSR	0	1	Oxidation (M)	2039.0245	0.024506776	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	1	0	9.5	0.5									2	2							28.445	28.445	2	0.0015122	26543	DP690-10	108.97	85.879			NaN	NaN	NaN	0	0	Median	806840	806840	0	4362	1901	4093	8631;8632;8633;8634	21003;21004;21005;21006;21007	21003	2440	5	9606
FMDQHPEMDFSK	1	0	2 Oxidation (M)	1542.6119	0.61191479	2432	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	2	0	6	0						1											11.812	11.812	3	0.064813	4357	DP690-6	40.767	29.722			0.95782	1.0963	NaN	1	0	Median	14569000	7461600	7107500	4363	2432	4094	8635	21008	21008		1	9606
FMEPYIFGSR	0	1	Oxidation (M)	1261.5801	0.58014438	2458	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	1	0	15	0															1		18.119	18.119	2	0.0053118	12770	DP690-15	94.309	60.123			0.85369	0.98587	NaN	1	0	Median	31767000	16713000	15053000	4364	2458	4095	8636	21009;21010;21011;21012	21010	2905	4	9606
FMNAVFFLLPK	1	0	Oxidation (M)	1341.7155	0.71551564	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	8.38	2.45		1							5	2							22.65	22.65	2	0.00012856	19054	DP690-9	129.42	102.37			0.7901	0.94594	4.6139	5	0	Median	307720000	163260000	144460000	4365	1046	4096	8637;8638;8639;8640;8641;8642;8643;8644	21013;21014;21015;21016;21017;21018;21019;21020;21021;21022;21023;21024;21025;21026;21027;21028;21029;21030;21031;21032;21033;21034;21035	21030	1603	23	9606
FMNAVFFLLPK	1	0	Unmodified	1325.7206	0.72060102	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							23.611	23.611	2	9.52E-05	18968	DP690-9	131.06	106.19			0.75573	0.93435	0.4023	2	0	Median	95961000	51841000	44120000	4366	1046	4096	8645;8646	21036;21037;21038;21039;21040;21041;21042;21043;21044	21044		9	9606
FMQASEDLLK	1	0	Oxidation (M)	1196.5747	0.57472465	501	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	1	0	8	0								1									14.88	14.88	2	0.00022542	8024	DP690-8	137.95	77.043			0.89758	0.98147	NaN	1	0	Median	27050000	14082000	12968000	4367	501	4097	8647	21045;21046;21047;21048;21049	21049	634	5	9606
FMQASEDLLK	1	0	Unmodified	1180.5798	0.57981002	501	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	0	8	0								1									16.702	16.702	2	0.0085223	9968	DP690-8	85.731	49.335			1.0238	1.1849	NaN	1	0	Median	3688500	1718700	1969800	4368	501	4097	8648	21050;21051;21052;21053	21052		4	9606
FMQDASDVMQLLLK	1	0	Oxidation (M)	1653.8106	0.8106146	82	O00410	IPO5	Importin-5	yes	yes	0	1	0	3	0			1														22.337	22.337	2	0.00017363	17845	DP690-3	122.51	91.898			0.97067	1.0186	NaN	1	0	Median	5465000	2894100	2570800	4369	82	4098	8649	21054;21055	21054	88;89	2	9606
FMQDASDVMQLLLK	1	0	2 Oxidation (M)	1669.8055	0.80552922	82	O00410	IPO5	Importin-5	yes	yes	0	2	0	3	0			1														19.099	19.099	2	0.0030166	13932	DP690-3	112.13	71.629			NaN	NaN	NaN	0	0	Median	14837000	0	14837000	4370	82	4098	8650	21056;21057	21056	88;89	2	9606
FMQDPMEVFVDDETK	1	0	Oxidation (M)	1845.7801	0.78010233	63	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	1	0	13	0													1				20.269	20.269	2	0.0029297	15791	DP690-13	90.759	62.792			0.77273	0.89607	NaN	1	0	Median	18135000	13152000	4982700	4371	63	4099	8651	21058;21059	21059	69;70	2	9606
FMQDPMEVFVDDETK	1	0	2 Oxidation (M)	1861.775	0.77501695	63	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	2	0	13	0													1				16.846	16.846	2	0.0029371	11270	DP690-13	112.43	89.648			NaN	NaN	NaN	0	0	Median	12016000	0	12016000	4372	63	4099	8652	21060;21061;21062;21063	21061	69;70	4	9606
FMQEMIELSSQQQK	1	0	2 Oxidation (M)	1757.7964	0.7964211	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	2	0	3	0			1														14.236	14.236	2	2.2922E-11	7540	DP690-3	177.04	143.15			NaN	NaN	NaN	0	0	Median	16338000	0	16338000	4373	2061	4100	8653	21064;21065	21064	2578;2579	2	9606
FMQEMIELSSQQQK	1	0	Oxidation (M)	1741.8015	0.80150647	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	1	0	3	0			1														15.565	15.565	2	7.4348E-08	9301	DP690-3	174.24	118.52			NaN	NaN	NaN	0	0	Median	3841000	0	3841000	4374	2061	4100	8654	21066;21067	21066	2578;2579	2	9606
FMQNNCVPK	1	0	Unmodified	1136.5107	0.5106846	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	0	13	0													1				11.973	11.973	2	0.0011442	4538	DP690-13	124.34	79.994			0.89602	1.0344	NaN	1	0	Median	75965000	39564000	36402000	4375	491	4101	8655	21068;21069;21070;21071	21069		4	9606
FMQTFVLAPEGSVANK	1	0	Oxidation (M)	1753.8709	0.87090667	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	1	0	8	4				1								1					17.548	17.548	2	1.0387E-17	12569	DP690-12	227.48	157.81			1.0226	1.1406	0.03346	2	0	Median	126750000	61433000	65319000	4376	1196	4102	8656;8657	21072;21073;21074;21075;21076;21077	21074	1848	6	9606
FMQTFVLAPEGSVANK	1	0	Unmodified	1737.876	0.87599205	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	12	0												4					18.943	18.943	2	3.1237E-17	14381	DP690-12	215.02	169.26			1.1235	1.3404	NaN	1	0	Median	66435000	28951000	37484000	4377	1196	4102	8658;8659;8660;8661	21078;21079;21080;21081;21082;21083;21084	21079		7	9606
FMSVQRPGPYDRPGTAR	0	3	Unmodified	1933.9581	0.95809897	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	2	13	0													1				12.523	12.523	3	0.0072064	5263	DP690-13	67.102	48.521			0.65072	0.67766	NaN	1	0	Median	133660000	81416000	52247000	4378	856	4103	8662	21085;21086	21086		2	9606
FMYDPQTDQNIK	1	0	Oxidation (M)	1514.6711	0.67114423	1804	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	1	0	3	0			1														14.349	14.349	2	0.0049475	7723	DP690-3	90.827	59.069			1.1927	1.2668	NaN	1	0	Median	11359000	5279800	6078800	4379	1804	4104	8663	21087;21088	21087	2381	2	9606
FNACFESVATNIDEIYK	1	0	Unmodified	2019.9248	0.92479273	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							20.874	20.874	2	2.8359E-07	17992	DP690-10	146.79	146.79			0.9269	1.1428	NaN	1	0	Median	54165000	26992000	27173000	4380	1285	4105	8664	21089;21090;21091	21091		3	9606
FNADEFEDMVAEK	1	0	Oxidation (M)	1559.645	0.64498906	601	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	0	15	0															1		17.255	17.255	2	8.4753E-09	11586	DP690-15	211.63	182.84			0.87404	0.96466	NaN	1	0	Median	154240000	77170000	77067000	4381	601	4106	8665	21092;21093;21094;21095	21094	805	4	9606
FNADEFEDMVAEKR	1	1	Oxidation (M)	1715.7461	0.74610008	601	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	1	15	0															2		16.067	16.067	2;3	1.9472E-05	10088	DP690-15	158.86	141.45			0.8461	0.96123	9.1292	2	0	Median	176430000	90217000	86209000	4382	601	4107	8666;8667	21096;21097;21098;21099;21100;21101	21099	805	6	9606
FNAESQGCNHEEDAGVR	0	1	Unmodified	1918.7864	0.78640177	2487	Q9Y4K0	LOXL2	Lysyl oxidase homolog 2	yes	yes	0	0	0	3	0			1														10.824	10.824	3	0.00075704	3215	DP690-3	115.38	96.309			NaN	NaN	NaN	0	0	Median	3778600	0	3778600	4383	2487	4108	8668	21102;21103	21102		2	9606
FNAHGDANTIVCNSK	1	0	Unmodified	1646.7471	0.74710314	433	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	12	4								3								3	11.797	11.797	2;3	4.6862E-17	4487	DP690-16	276.32	217.62			0.82567	0.87351	12.701	6	0	Median	4729600000	2677300000	2052299999.9999998	4384	433	4109	8669;8670;8671;8672;8673;8674	21104;21105;21106;21107;21108;21109;21110;21111;21112;21113;21114;21115;21116;21117;21118;21119;21120;21121;21122	21110		19	9606
FNAPGAQQFCFLLSTR	0	1	Unmodified	1855.9039	0.90393813	1297	Q14839;Q8TDI0;Q12873	CHD4;CHD5;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3	yes	no	0	0	0	10	0										1							21.33	21.33	2	2.2866E-05	18558	DP690-10	126.5	101.65			0.79519	0.99191	NaN	1	0	Median	25900000	14656000	11245000	4385	1297	4110	8675	21123;21124;21125;21126	21124		4	9606
FNASQLITQR	0	1	Unmodified	1176.6251	0.62512073	1948	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	14.5	0.5														1	1		16.467	16.467	2	6.0103E-05	10838	DP690-14	168.25	168.25			0.98489	1.1352	13.87	2	0	Median	243580000	119190000	124390000	4386	1948	4111	8676;8677	21127;21128;21129;21130;21131	21128		5	9606
FNDEHIPDSPFVVPVASLSDDAR	0	1	Unmodified	2526.2027	0.20268215	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7.33	3.77		1								2							20.223	20.223	2;3	1.5963E-12	17020	DP690-10	195.28	150.07			0.79515	0.87399	15.75	2	0	Median	342050000	205920000	136140000	4387	1270	4112	8678;8679;8680	21132;21133;21134;21135;21136;21137;21138;21139;21140;21141	21138		10	9606
FNDEHIPESPYLVPVIAPSDDAR	0	1	Unmodified	2580.2496	0.24963234	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										2							19.257	19.257	3	0.0072893	15648	DP690-10	77.693	49.766			NaN	NaN	NaN	0	0	Median	256890000	256890000	0	4388	250	4113	8681;8682	21142;21143;21144	21142		3	9606
FNDEHIPESPYLVPVIAPSDDARR	0	2	Unmodified	2736.3507	0.35074337	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										1							18.01	18.01	4	0.00025191	13857	DP690-10	76.614	53.914			0.72516	0.86369	NaN	1	0	Median	68687000	36133000	32554000	4389	250	4114	8683	21145;21146	21145		2	9606
FNDYFEFPR	0	1	Unmodified	1233.5455	0.54547343	1803;93	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	no	no	0	0	0	2	0		1															19.414	19.414	2	0.0049443	12796	DP690-2	100.02	72.135			1.192	1.2172	NaN	1	0	Median	3051000	1315400	1735600	4390	1803;93	4115	8684	21147;21148;21149	21147		3	9606
FNEEHIPDSPFVVPVASPSGDAR	0	1	Unmodified	2466.1816	0.18155278	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.22	2.66		1							1	6		1					21.893	21.893	2;3	3.2139000000000004E-30	14954	DP690-10	273.44	220.55			0.59632	0.6996	14.066	7	0	Median	3147299999.9999995	1967699999.9999998	1179500000	4391	549	4116	8685;8686;8687;8688;8689;8690;8691;8692;8693	21150;21151;21152;21153;21154;21155;21156;21157;21158;21159;21160;21161;21162;21163;21164;21165;21166;21167;21168;21169;21170	21152		21	9606
FNEENYGVK	1	0	Unmodified	1098.4982	0.49818889	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	11	0											1						13.157	13.157	2	0.0013464	6628	DP690-11	122.13	79.264			1.0305	1.2396	NaN	1	0	Median	92777000	45342000	47436000	4392	1755	4117	8694	21171;21172;21173;21174	21172		4	9606
FNFFIHNLAQLR	0	1	Unmodified	1518.8096	0.80956746	86	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	10	0										1							19.766	19.766	3	0.069126	16481	DP690-10	42.083	18.966			0.99818	1.2446	NaN	1	0	Median	24799000	9428000	15371000	4393	86	4118	8695	21175	21175		1	9606
FNFGEEEFKFPPK	2	0	Unmodified	1614.7718	0.77184455	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	1	11	0											1						19.671	19.671	3	2.5028E-05	16069	DP690-11	132.5	76.212			0.64719	0.75448	NaN	1	0	Median	65609000	39028000	26581000	4394	1768	4119	8696	21176;21177	21176		2	9606
FNFLAPELPAVSEFSTSETMGHSADR	0	1	Oxidation (M)	2855.3072	0.30722358	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	1	0	13	0													1				21.239	21.239	3	0.00066475	16966	DP690-13	94.072	58.902			NaN	NaN	NaN	0	0	Median	25368000	25368000	0	4395	894	4120	8697	21178;21179	21179	1371	2	9606
FNGAHIPGSPFK	1	0	Unmodified	1270.6459	0.64585618	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										1							14.97	14.97	3	0.0094143	9416	DP690-10	54.023	20.279			0.88446	1.0923	NaN	1	0	Median	135250000	76837000	58411000	4396	1270	4121	8698	21180;21181	21180		2	9606
FNGTHIPGSPFK	1	0	Unmodified	1300.6564	0.65642086	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.2	0.373										5	1						14.804	14.804	2;3	0.0009781	9307	DP690-10	97.957	40.61			0.82273	0.93535	15.939	2	0	Median	834300000	364790000	469510000	4397	549	4122	8699;8700;8701;8702;8703;8704	21182;21183;21184;21185;21186;21187;21188;21189;21190;21191	21187		10	9606
FNNWGGSLSLGHPFGATGCR	0	1	Unmodified	2133.9803	0.98029097	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	13	0													1				18.125	18.125	3	0.00046478	13000	DP690-13	86.189	56.117			0.60309	0.73432	NaN	1	0	Median	44795000	26678000	18117000	4398	894	4123	8705	21192;21193;21194;21195	21193		4	9606
FNNYVDCMK	1	0	Oxidation (M)	1205.4845	0.48452943	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									1	1							12.478	12.478	2	0.0087892	5084	DP690-9	98.582	26.89			0.85217	1.0389	6.5022	2	0	Median	103960000	55930000	48035000	4399	1046	4124	8706;8707	21196;21197;21198;21199;21200	21200	1604	5	9606
FNNYVDCMK	1	0	Unmodified	1189.4896	0.48961481	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								14.626	14.626	2	0.0021564	7954	DP690-9	113.26	84.094			0.92675	1.1279	NaN	1	0	Median	32293000	17588000	14704000	4400	1046	4124	8708	21201;21202;21203;21204	21202		4	9606
FNPFVTSDR	0	1	Unmodified	1081.5193	0.51925868	947	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	0	12	4								1								1	16.529	16.529	2	0.00062355	10417	DP690-16	145.16	96.594			1.051	1.1661	26.849	2	0	Median	186140000	96643000	89499000	4401	947	4125	8709;8710	21205;21206;21207;21208;21209	21208		5	9606
FNPIETFLLGSCASDR	0	1	Unmodified	1825.8669	0.86688392	2227	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	yes	yes	0	0	0	13	0													1				23.488	23.488	2	0.001002	19689	DP690-13	94.122	71.793			0.80847	0.95115	NaN	1	0	Median	3709700	1933400	1776300	4402	2227	4126	8711	21210;21211;21212	21210		3	9606
FNPLNTNQFYASSMEGTTR	0	1	Unmodified	2176.9848	0.98476723	1767	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	0	0	0	13	0													1				19.004	19.004	2	0.001902	14235	DP690-13	124.42	84.044			NaN	NaN	NaN	0	0	Median	3834300	3834300	0	4403	1767	4127	8712	21213	21213		1	9606
FNPSVFFLDFLVVPPSR	0	1	Unmodified	1980.0509	0.050919944	332	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	10	0										1							27.001	27.001	2	0.0001541	25262	DP690-10	118.37	98.357			0.66744	0.77161	NaN	1	0	Median	1190900	746290	444640	4404	332	4128	8713	21214;21215;21216;21217	21216		4	9606
FNQAQSGNIQSTVMLDK	1	0	Oxidation (M)	1895.9047	0.90472599	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	1	0	3	0			1														15.003	15.003	2	8.8031E-05	8698	DP690-3	124.47	124.47			0.9008	0.96151	NaN	1	0	Median	25266000	13538000	11729000	4405	724	4129	8714	21218;21219;21220;21221	21220	1066	4	9606
FNQAQSGNIQSTVMLDK	1	0	Unmodified	1879.9098	0.90981137	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	3	0			2														16.021	16.021	2	3.1086E-05	10024	DP690-3	168.76	83.087			0.85838	0.90637	NaN	1	0	Median	8800500	4085900	4714600	4406	724	4129	8715;8716	21222;21223;21224;21225	21225		4	9606
FNSDQLNHLFVLIQK	1	0	Unmodified	1814.9679	0.9679186	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															20.859	20.859	3	0.03134	14507	DP690-2	51.939	51.939			0.94293	0.94629	NaN	1	0	Median	5669400	2823300	2846200	4407	2418	4130	8717	21226;21227	21226		2	9606
FNSLNELVDYHR	0	1	Unmodified	1505.7263	0.72629134	1010	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	0	12.3	3.77							1								2		16.967	16.967	2;3	3.2253E-05	11384	DP690-15	156.01	119.57			0.88935	0.98256	9.0348	3	0	Plateau	169920000	89835000	80084000	4408	1010	4131	8718;8719;8720	21228;21229;21230;21231;21232;21233;21234;21235;21236;21237;21238;21239	21228		12	9606
FNSQPVGDCDFNVR	0	1	Unmodified	1653.7206	0.72055404	232	O60942	RNGTT	mRNA-capping enzyme;Polynucleotide 5'-triphosphatase;mRNA guanylyltransferase	yes	yes	0	0	0	12	0												1					15.793	15.793	2	4.457E-06	10077	DP690-12	180.66	144.07			0.66608	0.78961	NaN	1	0	Median	44476000	27966000	16510000	4409	232	4132	8721	21240;21241;21242;21243	21242		4	9606
FNVEDGEIVQQVR	0	1	Unmodified	1531.7631	0.76307078	1665	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	11	0											1						17.023	17.023	2	0.0019995	12352	DP690-11	92.538	55.953			0.8615	1.0287	NaN	1	0	Median	31599000	18254000	13345000	4410	1665	4133	8722	21244	21244		1	9606
FNVLLTTYEYIIK	1	0	Unmodified	1615.8861	0.88614603	834;835	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	10	0										1							23.745	23.745	2	0.00027885	21660	DP690-10	110.84	93.67			0.93657	1.1353	NaN	1	0	Median	10772000	5599500	5172700	4411	834;835	4134	8723	21245	21245		1	9606
FNVLQYVVPEVK	1	0	Unmodified	1433.7919	0.79185171	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	10	0										1							21.868	21.868	2	0.00021881	19201	DP690-10	150.15	117.82			0.98955	1.2206	NaN	1	0	Median	90438000	54327000	36111000	4412	1252	4135	8724	21246;21247;21248;21249	21247		4	9606
FNVWDTAGQEK	1	0	Unmodified	1293.599	0.59896556	991	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	11	4							1								1		16.645	16.645	2	0.00011212	10328	DP690-7	134.23	112.14			1.0545	1.1366	NaN	1	0	Median	50638000	28794000	21844000	4413	991	4136	8725;8726	21250;21251;21252;21253;21254	21252		5	9606
FNYGFEYLGVQDK	1	0	Unmodified	1578.7355	0.73545904	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								19.619	19.619	2	0.00026079	14375	DP690-9	129.82	106.44			1.0062	1.1219	1.0761	2	0	Median	21323000	12188000	9134700	4414	1264	4137	8727;8728	21255;21256;21257	21257		3	9606
FPAFELDSSK	1	0	Unmodified	1139.5499	0.5498901	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	0	5.5	0.5					1	1											17.752	17.752	2	0.011528	11468	DP690-5	81.525	49.591			0.77995	0.82981	11.708	2	0	Median	112210000	64159000	48050000	4415	2208	4138	8729;8730	21258;21259;21260	21259		3	9606
FPAFELDSSKRD	1	1	Unmodified	1410.6779	0.67794416	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	2	5	0					1												15.982	15.982	3	3.3379E-05	9187	DP690-5	178.95	142.27			0.75848	0.81314	NaN	1	0	Median	164220000	95991000	68229000	4416	2208	4139	8731	21261;21262;21263;21264	21262		4	9606
FPAVGEPNIQQYAQNMGLPQNR	0	1	Unmodified	2471.2016	0.20157671	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	11	0											1						20.382	20.382	2	0.0027043	17087	DP690-11	110.38	40.459			NaN	NaN	NaN	0	0	Median	0	0	0	4417	149	4140	8732	21265	21265		1	9606
FPAVGEPNIQQYAQNMGLPQNR	0	1	Oxidation (M)	2487.1965	0.19649134	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	1	0	3	0			1														18.321	18.321	2	0.0023243	13016	DP690-3	110.38	83.608			NaN	NaN	NaN	0	0	Median	0	0	0	4418	149	4140	8733	21266	21266	165	1	9606
FPDLTVELNR	0	1	Unmodified	1202.6295	0.62953741	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	3	0			1														19.025	19.025	2	0.019285	14047	DP690-3	74.464	14.346			1.2098	1.3664	NaN	1	0	Median	9507600	4498300	5009300	4419	858	4141	8734	21267;21268	21267		2	9606
FPDREENAVHSTEPVVQENGDEAGEGR	0	2	Unmodified	2967.3231	0.32308465	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	1	10	0										2							13.228	13.228	3;4	1.0548E-05	6876	DP690-10	114.21	103.53			0.56689	0.6752	NaN	1	0	Median	183980000	119870000	64112000	4420	1071	4142	8735;8736	21269;21270;21271;21272;21273;21274;21275;21276	21270		8	9606
FPEEEAPSTVLSQNLFTPK	1	0	Unmodified	2133.063	0.063000772	376	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	12	0												1					20.546	20.546	2	0.0015534	16622	DP690-12	112.44	65.375			NaN	NaN	NaN	0	0	Median	2390700	2390700	0	4421	376	4143	8737	21277	21277		1	9606
FPEELTQTFMSCNLITGMFQR	0	1	2 Oxidation (M)	2581.1651	0.16511613	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	2	0	13	0													1				21.593	21.593	2	9.2736E-16	17380	DP690-13	178.23	158.94			0.86016	1.0553	NaN	1	0	Median	13861000	7344800	6516500	4422	598	4144	8738	21278;21279;21280;21281;21282;21283;21284;21285	21282	796;797	8	9606
FPEELTQTFMSCNLITGMFQR	0	1	Unmodified	2549.1753	0.17528689	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	13	0													1				24.724	24.724	2	6.175099999999999E-19	20914	DP690-13	184.21	151.06			0.92838	1.0806	NaN	1	0	Median	2466100	1228300	1237700	4423	598	4144	8739	21286;21287;21288;21289;21290;21291;21292	21287		7	9606
FPEELTQTFMSCNLITGMFQR	0	1	Oxidation (M)	2565.1702	0.17020151	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	1	0	13	0													1				23.523	23.523	2	4.1928E-06	19698	DP690-13	132.86	91.874			NaN	NaN	NaN	0	0	Median	1507800	0	1507800	4424	598	4144	8740	21293;21294;21295	21293	796;797	3	9606
FPEILDLAPFCTLK	1	0	Unmodified	1662.8691	0.86911575	2506	Q9Y5T5	USP16	Ubiquitin carboxyl-terminal hydrolase 16	yes	yes	0	0	0	11	0											1						23.821	23.821	2	0.00068737	21535	DP690-11	105.17	105.17			0.50591	0.62177	NaN	1	0	Median	9417300	7445800	1971600	4425	2506	4145	8741	21296;21297;21298;21299;21300	21297		5	9606
FPGQLNADLR	0	1	Unmodified	1129.588	0.58800695	1034;406;2017;370;2010;1217;1389;24	P07437;A6NNZ2;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;P04350;Q3ZCM7;Q9BUF5;CON__ENSEMBL:ENSBTAP00000025008	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A;TUBB8;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-6 chain	no	no	0	0	0	9.5	4.23					2	1							2		1		17.116	17.116	2	0.00025528	9909	DP690-13	125.71	80.96		+	0.90033	0.94252	14.263	6	0	Median	4597500000	2386100000	2211400000	4426	406;1034;2017;1217;370;1389;2010;24	4146	8742;8743;8744;8745;8746;8747	21301;21302;21303;21304;21305;21306;21307;21308;21309;21310;21311;21312;21313;21314;21315;21316;21317;21318;21319;21320;21321;21322;21323;21324	21304		24	9606
FPGQLNADLRK	1	1	Unmodified	1257.683	0.68296996	1034;406;2017;370;2010;1217;1389;24	P07437;A6NNZ2;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;P04350;Q3ZCM7;Q9BUF5;CON__ENSEMBL:ENSBTAP00000025008	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A;TUBB8;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-6 chain	no	no	0	0	1	9.33	4.03					2	1							2	1			13.655	13.655	2;3	2.7137E-05	6378	DP690-5	141.1	95.266		+	0.93375	1.0471	14.472	6	0	Median	3728499999.9999995	1856099999.9999998	1872399999.9999998	4427	406;1034;2017;1217;370;1389;2010;24	4147	8748;8749;8750;8751;8752;8753	21325;21326;21327;21328;21329;21330;21331;21332;21333;21334;21335;21336;21337;21338;21339;21340;21341	21335		17	9606
FPHHDNELAQSEAYFENDCWVR	0	1	Unmodified	2763.1772	0.17721246	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	7	4			1								1						18.256	18.256	4	0.015294	12953	DP690-3	48.896	48.896			0.82869	0.96503	5.0897	2	0	Median	61304000	28307000	32997000	4428	797	4148	8754;8755	21342;21343	21343		1	9606
FPLFGGWK	1	0	Unmodified	950.50142	0.50142377	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	10.7	0.943										2		1					20.344	20.344	2	0.044363	16254	DP690-12	122.15	47.738			0.75246	0.87005	NaN	1	0	Median	115180000	67517000	47663000	4429	375	4149	8756;8757;8758	21344;21345;21346	21346		2	9606
FPLSHLDALK	1	0	Unmodified	1139.6339	0.63389451	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	13	0													1				16.087	16.087	3	0.00066604	10270	DP690-13	106.2	66.652			0.8404	0.97377	NaN	1	0	Median	41179000	20150000	21029000	4430	1597	4150	8759	21347;21348;21349;21350	21350		4	9606
FPLTTESAMKK	2	0	Oxidation (M)	1267.6482	0.64822394	988	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	1	1	15	0															1		11.49	11.49	3	0.0028964	4074	DP690-15	75.566	60.233			0.8862	1.0143	NaN	1	0	Median	18553000	10569000	7984000	4431	988	4151	8760	21351;21352;21353;21354	21351	1507	4	9606
FPPEASGYLHIGHAK	1	0	Unmodified	1622.8205	0.82052608	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	2	0		1															15.434	15.434	3	0.021017	8296	DP690-2	58.831	47.291			0.99067	0.99335	NaN	1	0	Median	4878100	2299900	2578200	4432	408	4152	8761	21355;21356	21356		2	9606
FPQLDSTSFANSR	0	1	Unmodified	1468.6947	0.69465686	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														17.359	17.359	2	9.6342E-10	10487	DP690-2	243.91	173.51			0.88064	0.9434	14.739	2	0	Median	179570000	97144000	82431000	4433	789	4153	8762;8763	21357;21358;21359;21360;21361;21362;21363;21364	21358		8	9606
FPQYLQYLYQGPIVLNPWDQVK	1	0	Unmodified	2708.4003	0.40025975	33	CON__P02663			yes	yes	0	0	0	5	0					1												24.528	24.528	2	0.0022862	19894	DP690-5	113.52	83.882		+	NaN	NaN	NaN	0	0	Median	4327900	4327900	0	4434	33	4154	8764	21365	21365		1	
FPSGNYPPCIGDNR	0	1	Unmodified	1592.7042	0.70417569	191	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	6	0						3											15.376	15.376	2	0.00081184	8629	DP690-6	103.44	67.787			0.66382	0.76	NaN	1	0	Median	7454000	3672200	3781800	4435	191	4155	8765;8766;8767	21366;21367;21368;21369;21370;21371	21367		6	9606
FPSLLTHNENMVAK	1	0	Oxidation (M)	1615.8028	0.8028271	1004	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	15	0															1		14.716	14.716	3	0.00028506	8214	DP690-15	105.19	80.661			0.90359	0.98421	NaN	1	0	Median	212900000	103050000	109850000	4436	1004	4156	8768	21372;21373;21374;21375	21375	1525	4	9606
FPSSFEEIEILWSQFLK	1	0	Unmodified	2099.0615	0.061544209	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0										1							27.998	27.998	2	0.028945	26175	DP690-10	98.902	50.334			NaN	NaN	NaN	0	0	Median	0	0	0	4437	1319	4157	8769	21376	21376		1	9606
FPSSGPVTPQPTALTFAK	1	0	Unmodified	1844.9672	0.96724989	2516	Q9Y679	AUP1	Ancient ubiquitous protein 1	yes	yes	0	0	0	14	0														1			18.022	18.022	2	3.7618E-13	12943	DP690-14	188.13	141.34			0.52756	0.64106	NaN	1	0	Median	54891000	34441000	20450000	4438	2516	4158	8770	21377;21378;21379;21380	21377		4	9606
FPSTICTESFQFLDR	0	1	Unmodified	1846.856	0.85598488	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										1							20.874	20.874	2	7.7246E-15	17924	DP690-10	226.33	175.98			0.69368	0.86125	NaN	1	0	Median	90610000	55444000	35166000	4439	1158	4159	8771	21381;21382;21383;21384;21385;21386	21381		6	9606
FPVFNMSYNPAENAVLLCTR	0	1	Oxidation (M)	2358.1137	0.11367291	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	1	0	3	0			1														20.957	20.957	2	1.7322E-20	16306	DP690-3	198.81	159.18			NaN	NaN	NaN	0	0	Median	4753000	0	4753000	4440	878	4160	8772	21387;21388;21389	21387	1334	3	9606
FPVPHNGSSEATLPAQMSTLHVSPPPSADPAR	0	1	Oxidation (M)	3310.6041	0.6040743	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	1	0	14	0														1			15.369	15.369	4	1.4801E-11	9382	DP690-14	136.16	108.74			0.50463	0.6095	NaN	1	0	Median	58794000	38483000	20310000	4441	820	4161	8773	21390;21391;21392	21391	1235	3	9606
FPVTDAVNK	1	0	Unmodified	989.5182	0.51819605	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	1									1		1						13.484	13.484	2	0.0091926	6435	DP690-9	90.37	41.614			0.79433	0.94762	NaN	1	0	Median	85983000	64063000	21919000	4442	1319	4162	8774;8775	21393;21394;21395;21396	21394		4	9606
FQASQGENLEGK	1	0	Unmodified	1306.6153	0.61534391	1541	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	10	0										1							12.309	12.309	2	0.031547	5532	DP690-10	90.149	53.084			NaN	NaN	NaN	0	0	Median	14049000	14049000	0	4443	1541	4163	8776	21397	21397		1	9606
FQDDNVEGDKVSK	2	0	Unmodified	1479.6842	0.68415175	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	1	10	0										1							10.862	10.862	3	0.073401	3467	DP690-10	72.681	58.501			0.86157	1.0339	NaN	1	0	Median	134320000	73492000	60829000	4444	1783	4164	8777	21398	21398		0	9606
FQDGDLTLYQSNTILR	0	1	Unmodified	1882.9425	0.94249171	432	P09211	GSTP1	Glutathione S-transferase P	yes	yes	0	0	0	7	0							1										19.365	19.365	2	1.3661E-24	13816	DP690-7	279.86	251.48			1.1361	1.3	NaN	1	0	Median	19797000	9356100	10441000	4445	432	4165	8778	21399	21399		1	9606
FQDLGAAYEVLSDSEKR	1	1	Unmodified	1926.9323	0.93232095	2321	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	0	0	1	14	0														1			18.617	18.617	3	6.2409E-07	13847	DP690-14	139	104.62			0.97919	1.1394	NaN	1	0	Median	119620000	66298000	53319000	4446	2321	4166	8779	21400;21401	21401		2	9606
FQDTAEALAAFTALMEGK	1	0	Unmodified	1912.9241	0.92406445	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	12	0												1					25.185	25.185	2	0.00033514	21717	DP690-12	107.35	107.35			0.88451	1.0488	NaN	1	0	Median	1184600	643540	541070	4447	2450	4167	8780	21402;21403;21404;21405	21404		4	9606
FQDTAEALAAFTALMEGK	1	0	Oxidation (M)	1928.919	0.91897907	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	1	0	12	0												1					22.039	22.039	2	0.0016542	18454	DP690-12	115.12	85.093			NaN	NaN	NaN	0	0	Median	5119800	5119800	0	4448	2450	4167	8781	21406	21406	2898	1	9606
FQDVGPQAPVGSVYQK	1	0	Unmodified	1718.8628	0.86278482	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	6.67	3.77				2								1					15.555	15.555	2	1.4534E-17	9116	DP690-4	223.36	176.13			0.76367	0.84511	10.532	2	0	Median	188990000	107820000	81171000	4449	2361	4168	8782;8783;8784	21407;21408;21409;21410;21411;21412;21413;21414;21415;21416	21413		10	9606
FQETEFLSPPR	0	1	Unmodified	1349.6616	0.66156582	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	11	0											1						17.437	17.437	2	0.026321	12941	DP690-11	94.692	49.324			NaN	NaN	NaN	0	0	Median	32106000	0	32106000	4450	723	4169	8785	21417;21418	21417		2	9606
FQFLYDVQVPIVDK	1	0	Unmodified	1709.9029	0.90285872	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											1						22.005	22.005	2	0.0064711	19271	DP690-11	107.97	70.353			NaN	NaN	NaN	0	0	Median	19556000	0	19556000	4451	1504	4170	8786	21419;21420	21419		2	9606
FQFVSGADEK	1	0	Unmodified	1126.5295	0.52948901	1472	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	3	0			1														14.918	14.918	2	0.069265	8546	DP690-3	58.246	29.076			1.5994	1.7009	NaN	1	0	Median	11846000	4843100	7003300	4452	1472	4171	8787	21421	21421		1	9606
FQGIKHECQANGPEDLNR	1	1	Unmodified	2111.9807	0.9806849	932	P60981	DSTN	Destrin	yes	yes	0	0	1	12	4								2								2	11.588	11.588	3;4	2.444E-11	4237	DP690-16	163.91	142.49			0.78114	0.87084	13.096	4	0	Median	62476000	34760000	27716000	4453	932	4172	8788;8789;8790;8791	21422;21423;21424;21425;21426;21427;21428;21429;21430;21431	21425		10	9606
FQGQQNDYILLSLVR	0	1	Unmodified	1792.9472	0.94718315	202	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	10	0										1							21.838	21.838	2	9.65E-05	19213	DP690-10	155.99	132.47			0.84034	1.0481	NaN	1	0	Median	25457000	13339000	12119000	4454	202	4173	8792	21432;21433	21432		2	9606
FQGQTCEMCQTCLGVCAEHK	1	0	Oxidation (M)	2458.9796	0.97964032	387	P05556	ITGB1	Integrin beta-1	yes	yes	0	1	0	3	0			1														12.993	12.993	3	0.00071535	5922	DP690-3	82.709	80.698			1.0127	1.0634	NaN	1	0	Median	6075400	3195200	2880200	4455	387	4174	8793	21434;21435	21434	408	2	9606
FQGVSLPVHLR	0	1	Unmodified	1251.7088	0.70879078	2263	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	14	0														1			16.701	16.701	3	0.016311	11243	DP690-14	62.408	45.382			1.0962	1.3224	NaN	1	0	Median	63415000	33002000	30413000	4456	2263	4175	8794	21436;21437;21438;21439	21438		4	9606
FQIINNTEGDWWEAR	0	1	Unmodified	1877.8697	0.86966111	412	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	0	0	12	0												1					20.417	20.417	2	8.1092E-06	16464	DP690-12	174.23	137.27			0.72381	0.87334	NaN	1	0	Median	16823000	9512500	7310500	4457	412	4176	8795	21440;21441;21442;21443	21442		4	9606
FQLNPTDTAR	0	1	Unmodified	1161.5778	0.57783619	2126	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	4	0				1													14.575	14.575	2	0.00019359	7997	DP690-4	128.38	77.317			0.84363	0.96136	NaN	1	0	Median	23463000	11518000	11945000	4458	2126	4177	8796	21444;21445;21446	21445		3	9606
FQMAYSNLLR	0	1	Oxidation (M)	1257.6176	0.61759251	687	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	1	0	12	4								1								1	16.467	16.467	2	0.016185	10513	DP690-16	83.998	41.711			0.84867	0.93778	3.3893	2	0	Median	185260000	99878000	85384000	4459	687	4178	8797;8798	21447;21448;21449;21450	21448	991	4	9606
FQMAYSNLLR	0	1	Unmodified	1241.6227	0.62267789	687	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	16	0																1	18.747	18.747	2	0.0013167	13195	DP690-16	106.68	79.429			0.75184	0.87717	NaN	1	0	Median	7944300	4456500	3487800	4460	687	4178	8799	21451;21452	21451		2	9606
FQMPDQGMTSADDFFQGTK	1	0	2 Oxidation (M)	2181.8983	0.89831998	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	2	0	4	0				1													17.253	17.253	2	5.8763E-12	11482	DP690-4	177.38	163.29			0.73551	0.80765	NaN	1	0	Median	14511000	8424100	6086500	4461	1359	4179	8800	21453;21454;21455;21456	21456	2103;2104	4	9606
FQMPDQGMTSADDFFQGTK	1	0	Oxidation (M)	2165.9034	0.90340536	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	1	0	4	0				1													19.087	19.087	2	9.131E-05	13620	DP690-4	122.97	121.16			0.62153	0.66542	NaN	1	0	Median	3388100	1851100	1537000	4462	1359	4179	8801	21457;21458	21457	2103;2104	2	9606
FQMTQEVVCDECPNVK	1	0	Oxidation (M)	1998.8485	0.84853302	2321	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	0	1	0	14	0														1			14.254	14.254	2	1.2322E-12	7775	DP690-14	210.93	160.47			0.79457	0.96602	NaN	1	0	Median	49783000	26010000	23773000	4463	2321	4180	8802	21459;21460;21461;21462	21459	2773	4	9606
FQNVADLHLYLYSAK	1	0	Unmodified	1780.9148	0.91482039	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3	0			1														18.69	18.69	3	0.0011831	13518	DP690-3	108.63	82.812			0.95602	1.0145	NaN	1	0	Median	31639000	16072000	15567000	4464	720	4181	8803	21463	21463		1	9606
FQPASAPAEDCISSSTEPKPDPK	2	0	Unmodified	2458.1322	0.13221932	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	1	10	0										1							13.743	13.743	3	0.0058018	7669	DP690-10	57.068	44.017			0.5547	0.66764	NaN	1	0	Median	129140000	82357000	46779000	4465	1240	4182	8804	21464;21465	21464		2	9606
FQPDLVTIVDDLR	0	1	Unmodified	1529.809	0.80895834	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															23.065	23.065	2	0.0062411	16666	DP690-2	99.283	75.296			0.87225	0.89268	NaN	1	0	Median	1666500	904380	762090	4466	2418	4183	8805	21466;21467;21468	21466		3	9606
FQPFQDGSSGQR	0	1	Unmodified	1352.6109	0.61092723	1931	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	3	0			2														14.008	14.008	2	0.013024	7354	DP690-3	105.2	40.931			NaN	NaN	NaN	0	0	Median	0	0	0	4467	1931	4184	8806;8807	21469;21470	21470		2	9606
FQPGETLTEILETPATSEQEAEHQR	0	1	Unmodified	2840.3464	0.34644586	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	10	0										1							20.275	20.275	3	4.9211E-06	17043	DP690-10	126.62	113.58			0.7453	0.92415	NaN	1	0	Median	97500000	56554000	40946000	4468	766	4185	8808	21471;21472;21473;21474;21475;21476	21471		6	9606
FQQEKEELINKK	3	0	Unmodified	1532.8199	0.81985738	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	2	10	0										1							10.513	10.513	3	0.0033504	2968	DP690-10	81.676	60.937			0.8762	0.9397	NaN	1	0	Median	348330000	190760000	157580000	4469	1794	4186	8809	21477	21477		1	9606
FQRPGDPQSAQDK	1	1	Unmodified	1472.7008	0.70080487	1341	Q15637	SF1	Splicing factor 1	yes	yes	0	0	1	12	0												1					10.419	10.419	3	6.2032E-06	2716	DP690-12	183.89	124.74			0.76264	0.89813	NaN	1	0	Median	94267000	52104000	42163000	4470	1341	4187	8810	21478;21479	21479		2	9606
FQSDSSSYPTVDSNSLLGQSR	0	1	Unmodified	2274.04	0.040033499	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	9	0									1								17.569	17.569	2	7.264299999999999E-19	11845	DP690-9	182.1	182.1			0.69768	0.87484	NaN	1	0	Median	6889700	4086200	2803600	4471	2422	4188	8811	21480;21481;21482;21483;21484;21485	21482		6	9606
FQSEEQQQTEDELQDK	1	0	Unmodified	1980.8549	0.85485849	34	CON__P02666			yes	yes	0	0	0	4.5	2.5		1					1										13.906	13.906	2	4.6225E-36	7046	DP690-7	241.35	186.57		+	NaN	NaN	NaN	0	0	Median	5196500	5196500	0	4472	34	4189	8812;8813	21486;21487	21487		2	
FQSGDFHVINGVLR	0	1	Unmodified	1587.8158	0.81577505	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			2														17.305	17.305	3	0.012268	11660	DP690-3	85.536	48.963			NaN	NaN	NaN	0	0	Median	0	0	0	4473	892	4190	8814;8815	21488;21489	21488		2	9606
FQSISTEFLALMK	1	0	Unmodified	1513.7851	0.78505177	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								22.738	22.738	2	0.00035326	18078	DP690-9	111.86	77.101			0.86099	1.0707	NaN	1	0	Median	4418800	1968500	2450300	4474	1264	4191	8816	21490;21491	21490		2	9606
FQSIVIGCALEDQK	1	0	Unmodified	1606.8025	0.80249275	341	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	15	0															1		18.192	18.192	2	2.2733E-06	12926	DP690-15	188.27	148.64			0.83544	0.98497	NaN	1	0	Median	10792000	5269600	5522500	4475	341	4192	8817	21492;21493;21494;21495	21494		4	9606
FQSIVIGCALEDQKK	2	0	Unmodified	1734.8975	0.89745577	341	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	1	12.3	3.77							1								2		16.269	16.269	2;3	2.9296E-05	10500	DP690-15	170.4	147.93			0.99224	1.0975	2.1937	2	0	Median	73563000	57810000	15753000	4476	341	4193	8818;8819;8820	21496;21497;21498;21499;21500;21501;21502	21496		7	9606
FQSQADQDQQASGLQSPPSR	0	1	Unmodified	2173.9988	0.99883739	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	11	0											1						12.977	12.977	2	2.971E-34	6433	DP690-11	305.98	278.02			0.75384	0.90191	NaN	1	0	Median	29465000	17323000	12142000	4477	2302	4194	8821	21503;21504;21505	21503		3	9606
FQSSHHPTDITSLDQYVER	0	1	Unmodified	2259.0556	0.055623984	490	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	3	0			1														15.786	15.786	4	0.028438	9735	DP690-3	64.83	35.25			NaN	NaN	NaN	0	0	Median	14013000	14013000	0	4478	490	4195	8822	21506	21506		1	9606
FQSTYEELTGWLR	0	1	Unmodified	1628.7835	0.78347187	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								21.587	21.587	2	0.006034	16767	DP690-9	81.525	59.975			1.4041	1.7566	NaN	1	0	Median	4431600	1804900	2626700	4479	2411	4196	8823	21507	21507		1	9606
FQSVIITSGTLSPLDIYPK	1	0	Unmodified	2078.13	0.12995813	522	P18074	ERCC2	TFIIH basal transcription factor complex helicase XPD subunit	yes	yes	0	0	0	11	0											1						21.768	21.768	2	0.011267	19004	DP690-11	97.203	62.197			NaN	NaN	NaN	0	0	Median	3944500	3944500	0	4480	522	4197	8824	21508	21508		1	9606
FQTEIQTVNK	1	0	Unmodified	1206.6245	0.62445203	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	4	0				1													13.349	13.349	2	0.0018063	6407	DP690-4	137.14	86.069			NaN	NaN	NaN	0	0	Median	21903000	0	21903000	4481	495	4198	8825	21509;21510	21509		2	9606
FQTIDLSPFLFTR	0	1	Unmodified	1583.8348	0.83477916	1835	Q96CU9	FOXRED1	FAD-dependent oxidoreductase domain-containing protein 1	yes	yes	0	0	0	12.5	0.5												1	1				23.317	23.317	2	0.001483	19796	DP690-12	97.456	72.603			0.76141	0.9284	NaN	1	0	Median	2266800	1249900	1016900	4482	1835	4199	8826;8827	21511;21512;21513;21514;21515	21512		5	9606
FQYCVAVGAQTFPSVSAPSK	1	0	Unmodified	2143.0408	0.040825542	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						18.762	18.762	2	1.1596E-28	14864	DP690-11	214.89	179.81			NaN	NaN	NaN	0	0	Median	58047000	0	58047000	4483	897	4200	8828	21516;21517;21518	21516		3	9606
FQYCVAVGAQTFPSVSAPSKK	2	0	Unmodified	2271.1358	0.13578856	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	11	0											2						17.154	17.154	2;3	7.4285E-07	12551	DP690-11	133.24	121.28			0.70975	0.77502	NaN	1	0	Median	446710000	258800000	187910000	4484	897	4201	8829;8830	21519;21520;21521	21519		3	9606
FRCPEALFQPSFLGMESCGIHETTFNSIMK	1	1	2 Oxidation (M)	3565.6139	0.6138524	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	2	1	14	0														1			19.235	19.235	3	1.2667E-08	14624	DP690-14	131.64	123.6			0.74714	0.89712	NaN	1	0	Median	75782000	40687000	35095000	4485	926;1023	4202	8831	21522;21523	21522	1420;1421	2	9606
FRCPEALFQPSFLGMESCGIHETTFNSIMK	1	1	Oxidation (M)	3549.6189	0.61893778	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	1	14	0														2			20.117	20.117	3;4	3.8369E-18	15696	DP690-14	167.28	156.03			0.75826	0.85342	5.6771	2	0	Median	712830000	355740000	357090000	4486	926;1023	4202	8832;8833	21524;21525;21526;21527;21528;21529;21530;21531	21530	1420;1421	8	9606
FRELAEEAAR	0	2	Unmodified	1190.6044	0.60438529	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							11.831	11.831	2;3	0.0024353	4881	DP690-10	107.11	69.433			0.73665	0.7985	NaN	1	0	Median	37445000	28003000	9441700	4487	1319	4203	8834;8835	21532;21533;21534;21535;21536	21532		5	9606
FRENVEDVFR	0	2	Unmodified	1309.6415	0.64149908	2161	Q9HBH0	RHOF	Rho-related GTP-binding protein RhoF	yes	yes	0	0	1	15	0															1		15.48	15.48	3	0.0010587	9396	DP690-15	85.958	69.821			0.70848	0.76856	NaN	1	0	Median	23545000	12291000	11254000	4488	2161	4204	8836	21537;21538;21539;21540	21537		4	9606
FRGEEGLDYGGVAR	0	2	Unmodified	1524.7321	0.732105	2156	Q9HAU4;Q9HCE7	SMURF2;SMURF1	E3 ubiquitin-protein ligase SMURF2;E3 ubiquitin-protein ligase SMURF1	yes	no	0	0	1	11	0											1						14.028	14.028	3	0.016086	8013	DP690-11	59.68	32.674			1.5102	1.8617	NaN	1	0	Median	171560000	77168000	94393000	4489	2156	4205	8837	21541;21542	21542		2	9606
FRGPFTDVVTTNLK	1	1	Unmodified	1593.8515	0.85149185	313	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	1	15	0															2		17.25	17.25	2;3	0.00019378	11703	DP690-15	151.13	130.29			0.71609	0.82799	15.011	2	0	Median	72282000	37889000	34393000	4490	313	4206	8838;8839	21543;21544;21545;21546;21547;21548	21547		6	9606
FRHENVIGIR	0	2	Unmodified	1239.6836	0.68363867	600	P27361	MAPK3	Mitogen-activated protein kinase 3	yes	yes	0	0	1	6	0						1											11.612	11.612	3	0.0013326	4079	DP690-6	93.561	48.58			0.83681	0.90001	NaN	1	0	Median	35820000	19975000	15844000	4491	600	4207	8840	21549;21550	21550		2	9606
FRPLNESEVNR	0	2	Unmodified	1359.6895	0.6895119	648	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	1	3	0			1														12.234	12.234	3	0.0062923	4979	DP690-3	65.695	27.061			0.90828	0.93959	NaN	1	0	Median	11602000	5731000	5871400	4492	648	4208	8841	21551	21551		1	9606
FRPLQLETINVTMAGK	1	1	Oxidation (M)	1832.9819	0.9818541	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	1	1	9	3.56				1							1	1					17.214	17.214	3	1.9226E-07	12147	DP690-12	157.91	143.11			0.821	0.91364	5.3257	2	0	Median	421480000	248630000	172850000	4493	751	4209	8842;8843;8844	21552;21553;21554;21555;21556;21557;21558;21559	21557	1108	8	9606
FRPLQLETINVTMAGK	1	1	Unmodified	1816.9869	0.98693948	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	11.5	0.5											1	1					18.299	18.299	3	2.1912E-07	13552	DP690-12	140.96	122.38			0.72555	0.82996	16.926	2	0	Median	304370000	182870000	121490000	4494	751	4209	8845;8846	21560;21561;21562;21563;21564;21565;21566;21567	21564		8	9606
FSALQQAVPTESTDNRR	0	2	Unmodified	1918.9497	0.94970235	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	6	4		1								1							13.988	13.988	3	0.00062298	7945	DP690-10	84.297	65.292			0.93476	1.0195	24.467	2	0	Median	250030000	129390000	120630000	4495	1111	4210	8847;8848	21568;21569	21568		2	9606
FSAPVVPSSFNFGGPAPGMN	0	0	Oxidation (M)	1994.9196	0.91964777	320	O95373	IPO7	Importin-7	yes	yes	0	1	0	3	0			1														21.982	21.982	2	0.002366	17446	DP690-3	104.59	53.341			NaN	NaN	NaN	0	0	Median	0	0	0	4496	320	4211	8849	21570	21570	334	1	9606
FSDFLGLYEK	1	0	Unmodified	1217.5968	0.5968403	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	4	0				1													19.977	19.977	2	9.1283E-05	14685	DP690-4	153.05	115.4			0.84656	0.92747	NaN	1	0	Median	16112000	9129700	6982500	4497	1227	4212	8850	21571;21572;21573	21573		3	9606
FSDHVALLSVFQAWDDAR	0	1	Unmodified	2076.0065	0.0064889465	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	11	0											1						22.481	22.481	3	1.3363E-05	19881	DP690-11	124.91	124.91			0.7603	0.91425	NaN	1	0	Median	25535000	13033000	12502000	4498	1137	4213	8851	21574;21575;21576;21577;21578;21579	21574		6	9606
FSDSYASVIK	1	0	Unmodified	1115.5499	0.5498901	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	4	0				1													15.677	15.677	2	9.289E-05	9488	DP690-4	150.36	122.48			0.91364	0.93146	NaN	1	0	Median	427950000	224340000	203610000	4499	516	4214	8852	21580;21581;21582;21583;21584;21585;21586	21583		7	9606
FSEGEATLR	0	1	Unmodified	1008.4876	0.4876242	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	3	0			1														13.082	13.082	2	0.00094522	6050	DP690-3	126.52	78.673			0.98348	1.125	NaN	1	0	Median	23636000	11089000	12547000	4500	770	4215	8853	21587;21588	21587		2	9606
FSEGNILELLHR	0	1	Unmodified	1426.7569	0.75686319	1966	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	7	4			1								1						19.907	19.907	3	2.2257E-05	16453	DP690-11	134.98	119.82			0.99501	1.1665	12.739	2	0	Median	38641000	20082000	18559000	4501	1966	4216	8854;8855	21589;21590;21591;21592	21590		4	9606
FSEGTSADREIQR	0	2	Unmodified	1494.7063	0.70628418	983	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	1	6	0						1											11.231	11.231	3	0.012683	3713	DP690-6	65.842	42.963			1.0677	1.1483	NaN	1	0	Median	10171000	4708300	5462500	4502	983	4217	8856	21593;21594;21595	21595		3	9606
FSELTAEK	1	0	Unmodified	923.46001	0.46001246	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	4	0				1													12.283	12.283	2	0.017381	4987	DP690-4	113.41	45.029			NaN	NaN	NaN	0	0	Median	17001000	17001000	0	4503	779	4218	8857	21596;21597	21597		2	9606
FSEYLLECPSAEVR	0	1	Unmodified	1698.7923	0.792322	1803;93	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	no	no	0	0	0	2	0		1															18.362	18.362	2	0.00014992	11742	DP690-2	120.06	103.29			1.1566	1.1855	NaN	1	0	Median	3485400	1353700	2131700	4504	1803;93	4219	8858	21598;21599;21600	21600		3	9606
FSFGLLDLPFR	0	1	Unmodified	1310.7023	0.70230842	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0.816									4	4	4						24.362	24.362	2	1.5363E-05	22269	DP690-10	195.05	129.74			0.8666	1.0451	14.333	3	0	Median	60041000	56204000	3837400	4505	13	4220	8859;8860;8861;8862;8863;8864;8865;8866;8867;8868;8869;8870	21601;21602;21603;21604;21605;21606;21607;21608;21609;21610;21611;21612;21613;21614;21615;21616;21617;21618;21619	21602		19	9606
FSFSPEPTLEDIRR	0	2	Unmodified	1692.8471	0.84713476	2130	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	1	8	0								1									17.866	17.866	3	0.0012146	11275	DP690-8	84.188	84.188			0.78636	0.83083	NaN	1	0	Median	2242300	1299300	943040	4506	2130	4221	8871	21620;21621	21620		2	9606
FSFTLPYPVK	1	0	Unmodified	1197.6434	0.64339656	2287	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	9	0									1								20.48	20.48	2	0.04394	15462	DP690-9	66.27	15.077			0.98039	1.215	NaN	1	0	Median	3942400	2373500	1568900	4507	2287	4222	8872	21622	21622		1	9606
FSFWDKDAR	1	1	Unmodified	1170.5458	0.54580778	1045	P78406	RAE1	mRNA export factor	yes	yes	0	0	1	14	0														1			15.917	15.917	3	0.00062813	10112	DP690-14	119.75	103.88			1.0329	1.2991	NaN	1	0	Median	27227000	11569000	15658000	4508	1045	4223	8873	21623;21624;21625;21626	21624		4	9606
FSGGFGAR	0	1	Unmodified	797.38204	0.38203692	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	11	0											1						12.587	12.587	2	0.030997	5832	DP690-11	123.99	58.091			NaN	NaN	NaN	0	0	Median	0	0	0	4509	96	4224	8874	21627	21627		1	9606
FSGNLLVSLLGTWSDTSSGGPAR	0	1	Unmodified	2321.1652	0.16517443	951	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	0	10	0.816									1	1	1						25.326	25.326	2	8.622000000000001E-20	23471	DP690-10	188	169.36			0.68213	0.84097	15.585	3	0	Median	9245200	5407800	3837400	4510	951	4225	8875;8876;8877	21628;21629;21630;21631;21632;21633;21634;21635;21636	21628		9	9606
FSGTTGQMSDLNK	1	0	Oxidation (M)	1400.6242	0.62419403	728	P42356	PI4KA	Phosphatidylinositol 4-kinase alpha	yes	yes	0	1	0	10	0										1							11.079	11.079	2	0.0062464	3835	DP690-10	87.713	53.792			0.89841	1.0924	NaN	1	0	Median	18311000	8757500	9553100	4511	728	4226	8878	21637;21638;21639	21637	1075	3	9606
FSHDADPEVSYNSIFAMGMVGSGTNNAR	0	1	2 Oxidation (M)	3005.292	0.29198422	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	2	0	3	0			1														17.478	17.478	3	3.2136E-05	12037	DP690-3	86.248	72.546			0.89765	1.0284	NaN	1	0	Median	15058000	7222300	7835800	4512	1190	4227	8879	21640;21641;21642;21643	21642	1841;1842	4	9606
FSHQASGFQCDLTTNNR	0	1	Unmodified	1981.8701	0.87007182	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	12	0												2					13.452	13.452	2;3	6.7363E-33	6837	DP690-12	304.03	272			0.85873	0.96522	0.54009	2	0	Median	674580000	336770000	337800000	4513	2240	4228	8880;8881	21644;21645;21646;21647;21648;21649;21650;21651;21652;21653	21652		10	9606
FSHQGVQLIDFSPCER	0	1	Unmodified	1918.8996	0.89958103	902	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	3	0			1														17.25	17.25	3	0.00020723	11635	DP690-3	103.5	88.38			1.3091	1.5095	NaN	1	0	Median	20312000	9592200	10720000	4514	902	4229	8882	21654	21654		1	9606
FSIAPSSLDPSNR	0	1	Unmodified	1389.6888	0.6888432	871	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	12	0												1					17.315	17.315	2	0.00032737	12204	DP690-12	121.61	100.64			0.68072	0.80735	NaN	1	0	Median	47410000	25768000	21642000	4515	871	4230	8883	21655	21655		1	9606
FSIQTMCPIEGEGNIAR	0	1	Unmodified	1921.9026	0.9026175	1187	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	14	0														1			18.596	18.596	2	1.0683E-17	13772	DP690-14	218.02	218.02			0.8907	1.0799	NaN	1	0	Median	35469000	18031000	17438000	4516	1187	4231	8884	21656;21657;21658;21659;21660	21658		5	9606
FSLENNFLLQHNIR	0	1	Unmodified	1743.9057	0.90565269	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	3	0			1														18.611	18.611	3	6.7702E-06	13361	DP690-3	175.74	130.54			0.88291	0.96149	NaN	1	0	Median	60106000	32806000	27300000	4517	724	4232	8885	21661;21662;21663	21662		3	9606
FSLIDLAGNER	0	1	Unmodified	1233.6354	0.63535107	62	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	11	0											1						20.126	20.126	2	1.5317E-06	16665	DP690-11	224.86	111.61			0.8326	0.97442	NaN	1	0	Median	153420000	84436000	68982000	4518	62	4233	8886	21664;21665;21666;21667	21665		4	9606
FSLVDLAGNER	0	1	Unmodified	1219.6197	0.619701	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	no	no	0	0	0	10	1									1		1						19.31	19.31	2	2.6699E-06	15605	DP690-11	247.58	192.47			1.0214	1.1903	24.718	2	0	Median	419560000	216210000	203340000	4519	1950	4234	8887;8888	21668;21669;21670;21671;21672;21673;21674	21669		7	9606
FSMPGFKGEGPDVDVNLPK	2	0	Oxidation (M)	2048.9877	0.98772734	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	1	1	9	0									1								16.529	16.529	3	0.00019731	10521	DP690-9	99.273	84.615			0.81848	0.94428	NaN	1	0	Median	51513000	27945000	23569000	4520	1145	4235	8889	21675;21676	21675	1767	2	9606
FSMPGFKGEGPEVDMNLPK	2	0	2 Oxidation (M)	2110.9704	0.97036272	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	2	1	9	0									1								15.262	15.262	3	0.034026	8816	DP690-9	42.044	32.837			0.75744	0.90437	NaN	1	0	Median	13709000	7796300	5912700	4521	1145	4236	8890	21677	21677	1768;1769	1	9606
FSMPGFKGEGPEVDVK	2	0	Oxidation (M)	1738.8236	0.82362212	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	1	9	0									1								14.437	14.437	3	0.0076167	7724	DP690-9	64.476	40.392			0.81981	0.9683	NaN	1	0	Median	20816000	10717000	10099000	4522	1145	4237	8891	21678;21679	21678	1770	2	9606
FSMPGFKGEGPEVDVNLPK	2	0	Oxidation (M)	2063.0034	0.0033774035	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	1	1	9	0									1								16.565	16.565	3	0.0017778	10589	DP690-9	73.138	44.389			0.68925	0.81062	NaN	1	0	Median	24548000	14182000	10366000	4523	1145	4238	8892	21680;21681	21680	1771	2	9606
FSMPSLKGEGPEVDVNLPK	2	0	Oxidation (M)	2059.0296	0.029592154	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	1	9	0									1								16.524	16.524	3	0.035991	10508	DP690-9	46.209	18.985			0.64046	0.76597	NaN	1	0	Median	12863000	8072100	4790500	4524	1145	4239	8893	21682	21682	1772	1	9606
FSMVVQDGIVK	1	0	Oxidation (M)	1237.6377	0.63765925	619	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	1	0	8	0								1									14.842	14.842	2	0.0054019	7861	DP690-8	91.584	65.2			1.3916	1.5885	NaN	1	0	Median	7746100	3581700	4164400	4525	619	4240	8894	21683;21684	21684	853	2	9606
FSNSSSSNEFSK	1	0	Unmodified	1319.563	0.56297399	51	CON__Q5D862;Q5D862	FLG2	Filaggrin-2	yes	no	0	0	0	9	0									1								11.303	11.303	2	0.0062584	3737	DP690-9	107.11	45.435		+	NaN	NaN	NaN	0	0	Median	1829200	1829200	0	4526	51	4241	8895	21685	21685		1	9606
FSPAGPILSIR	0	1	Unmodified	1156.6604	0.66044361	471	P11940;Q9H361;Q4VXU2;Q5JQF8	PABPC1;PABPC3;PABPC1L;PABPC1L2A	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 1-like 2	yes	no	0	0	0	12	0												1					18.264	18.264	2	0.021253	13589	DP690-12	98.048	50.305			NaN	NaN	NaN	0	0	Median	50282000	50282000	0	4527	471	4242	8896	21686	21686		1	9606
FSPDGELYASGSEDGTLR	0	1	Unmodified	1899.8487	0.8486509	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	14	0														1			17.047	17.047	2	2.8586E-11	11789	DP690-14	171.99	149.95			0.7297	0.8771	NaN	1	0	Median	79208000	44004000	35204000	4528	2474	4243	8897	21687;21688	21687		2	9606
FSPDIFSSVSVPPSLK	1	0	Unmodified	1705.8927	0.89268797	1491	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	10	0										1							21.007	21.007	2	0.0050156	18133	DP690-10	75.102	49.059			0.93937	1.1546	NaN	1	0	Median	39170000	18511000	20659000	4529	1491	4244	8898	21689	21689		1	9606
FSPDSQYIDNR	0	1	Unmodified	1340.5997	0.59969384	1727	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	10	0										1							14.444	14.444	2	0.0064937	8661	DP690-10	112.3	71.068			NaN	NaN	NaN	0	0	Median	25181000	25181000	0	4530	1727	4245	8899	21690;21691	21690		2	9606
FSPGAPGGSGSQPNQK	1	0	Unmodified	1514.7114	0.71136956	1350	Q15942	ZYX	Zyxin	yes	yes	0	0	0	7.5	3.5				1							1						10.696	10.696	2	0.0027826	3142	DP690-4	122.55	68.791			NaN	NaN	NaN	0	0	Median	2740600	0	2740600	4531	1350	4246	8900;8901	21692;21693	21693		2	9606
FSPIPFPPLSYK	1	0	Unmodified	1391.7489	0.74892426	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							21.127	21.127	2	0.031161	18213	DP690-10	67.207	38.409			0.59403	0.73008	NaN	1	0	Median	37108000	24132000	12976000	4532	1492	4247	8902	21694;21695	21694		2	9606
FSPLTTNLINLLAENGR	0	1	Unmodified	1872.0105	0.010511692	773	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	16	0																1	23.573	23.573	2	0.05169	18519	DP690-16	84.297	52.819			NaN	NaN	NaN	0	0	Median	367040	0	367040	4533	773	4248	8903	21696	21696		1	9606
FSPNSSNPIIVSCGWDK	1	0	Unmodified	1906.8883	0.88834765	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	14	0														1			18.208	18.208	2	1.5542E-07	13219	DP690-14	165.51	130.74			0.89237	1.0064	NaN	1	0	Median	380840000	201800000	179040000	4534	1022	4249	8904	21697;21698;21699;21700	21700		4	9606
FSPNTSQFLLVSSWDTSVR	0	1	Unmodified	2170.0695	0.069483134	185	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	14	0														1			21.883	21.883	2	1.682E-05	17977	DP690-14	168.93	115.33			NaN	NaN	NaN	0	0	Median	31342000	31342000	0	4535	185	4250	8905	21701;21702	21701		2	9606
FSPTDFLAK	1	0	Unmodified	1024.5229	0.52294707	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10.5	0.5										1	1						19.267	19.267	2	0.00068569	15573	DP690-11	145.16	84.357			0.70247	0.86679	NaN	1	0	Median	123270000	79615000	43660000	4536	732	4251	8906;8907	21703;21704;21705;21706	21705		4	9606
FSQEVQITEAR	0	1	Unmodified	1306.6517	0.65172941	635	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	0	6	0						1											14.199	14.199	2	8.1093E-05	7144	DP690-6	128.91	128.91			0.83069	0.94805	NaN	1	0	Median	14468000	7582600	6885200	4537	635	4252	8908	21707;21708	21707		2	9606
FSQEVQVPEAR	0	1	Unmodified	1288.6412	0.64116473	1535	Q7LG56	RRM2B	Ribonucleoside-diphosphate reductase subunit M2 B	yes	yes	0	0	0	6	0						1											14.192	14.192	2	5.6051E-05	7063	DP690-6	178.54	145.73			0.70434	0.75999	NaN	1	0	Median	79027000	45585000	33442000	4538	1535	4253	8909	21709;21710;21711;21712	21711		4	9606
FSQMLHPIFEEASDVIKEEFPNENQVVFAR	1	1	Oxidation (M)	3565.7188	0.71876971	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	1	1	5	0					2												21.933	21.933	3;4	1.6895E-12	16737	DP690-5	150.59	137.06			0.77143	0.82702	27.981	2	0	Median	322280000	176480000	145800000	4539	1989	4254	8910;8911	21713;21714;21715;21716;21717;21718;21719;21720;21721;21722;21723	21721	2528	11	9606
FSQMLHPIFEEASDVIKEEFPNENQVVFAR	1	1	Unmodified	3549.7239	0.72385508	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	1	5	0					1												22.905	22.905	4	1.1863E-06	17824	DP690-5	120.4	102.08			0.75502	0.80943	NaN	1	0	Median	48211000	27160000	21051000	4540	1989	4254	8912	21724;21725	21724		2	9606
FSSACDVGGCTGALAR	0	1	Unmodified	1627.7083	0.70827479	335	O95671	ASMTL	N-acetylserotonin O-methyltransferase-like protein	yes	yes	0	0	0	4	0				1													14.348	14.348	2	0.00038944	7666	DP690-4	108.68	75.645			0.83126	0.96672	NaN	1	0	Median	7874300	3670900	4203400	4541	335	4255	8913	21726;21727;21728;21729	21726		4	9606
FSSCGGGGGSFGAGGGFGSR	0	1	Unmodified	1764.7274	0.72743033	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3.5	0.5			1	1													15.081	15.081	2	4.1893E-08	8616	DP690-4	178.07	132.24		+	NaN	NaN	NaN	0	0	Median	17475000	17475000	0	4542	369	4256	8914;8915	21730;21731;21732;21733;21734	21733		5	9606
FSSITAHPER	0	1	Unmodified	1143.5673	0.5672715	1734	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	11	0											1						10.762	10.762	3	0.019202	3214	DP690-11	62.166	37.657			0.79746	0.98856	NaN	1	0	Median	7262200	4063600	3198600	4543	1734	4257	8916	21735;21736;21737;21738	21735		4	9606
FSSSGGGGGGGRFSSSSGYGGGSSR	0	2	Unmodified	2197.9373	0.93729976	667	P35527	KRT9	Keratin, type I cytoskeletal 9	yes	yes	0	0	1	9.17	4.45				1	1		1		1					1		1	11.361	11.361	3	1.2842E-05	3940	DP690-4	119.38	90.243		+	NaN	NaN	NaN	0	0	Median	37782000	37782000	0	4544	667	4258	8917;8918;8919;8920;8921;8922	21739;21740;21741;21742;21743;21744;21745;21746;21747;21748;21749;21750	21745		12	9606
FSSSIENSDSPVR	0	1	Unmodified	1423.6579	0.657937	323	O95425	SVIL	Supervillin	yes	yes	0	0	0	10	0										1							13.844	13.844	2	1.3684E-05	7798	DP690-10	185.29	147.95			0.69916	0.87123	NaN	1	0	Median	74373000	42643000	31730000	4545	323	4259	8923	21751;21752;21753;21754	21752		4	9606
FSSSSGYGGGSSR	0	1	Unmodified	1234.5214	0.52144352	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	4.33	4.03	1	1								1							10.625	10.625	2	5.807500000000001E-25	2581	DP690-1	217.66	170.67		+	NaN	NaN	NaN	0	0	Median	457020000	457020000	0	4546	667	4260	8924;8925;8926	21755;21756;21757;21758;21759;21760	21756		6	9606
FSSVQLLGDLLFHISGVTGK	1	0	Unmodified	2117.1521	0.15209055	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	9.5	0.5									1	1							25.308	25.308	3	1.6644E-14	23443	DP690-10	190.25	190.25			0.88232	1.0834	5.4559	2	0	Median	32268000	16140000	16127000	4547	1782	4261	8927;8928	21761;21762;21763;21764;21765;21766;21767;21768;21769	21763		9	9606
FSTYTSDKDENKLSEASGGR	2	1	Unmodified	2191.0029	0.0029197111	1732	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	2	12	0												1					12.382	12.382	4	0.002446	5314	DP690-12	76.573	66.824			1.0039	1.108	NaN	1	0	Median	88812000	45072000	43740000	4548	1732	4262	8929	21770;21771	21770		2	9606
FSVCVLGDQQHCDEAK	1	0	Unmodified	1891.8193	0.8192818	1004	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	15	0															2		14.979	14.979	2;3	5.9137E-13	8659	DP690-15	207.64	190.96			1.0152	1.113	NaN	1	0	Median	186810000	98041000	88770000	4549	1004	4263	8930;8931	21772;21773;21774;21775;21776;21777;21778	21776		7	9606
FSVLMQMR	0	1	Oxidation (M)	1026.4991	0.49905728	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	1	0	15	0															2		16.208	16.208	2	0.048226	10400	DP690-15	105.12	63.007			NaN	NaN	NaN	0	0	Median	0	0	0	4550	1983	4264	8932;8933	21779;21780	21780		2	9606
FSVSGEGEGDATYGK	1	0	Unmodified	1502.6525	0.65251728	57	CON__Q9U6Y5			yes	yes	0	0	0	6.53	2.41	3	1	1	1	37	15	31	16	1				4	1	1	1	24.409	24.409	2;3	2.5122E-59	24552	DP690-7	268.91	209.56		+	3.1445	3.4494	275.64	22	0	Median	146990000000	67285000000	79703000000	4551	57	4265	8934;8935;8936;8937;8938;8939;8940;8941;8942;8943;8944;8945;8946;8947;8948;8949;8950;8951;8952;8953;8954;8955;8956;8957;8958;8959;8960;8961;8962;8963;8964;8965;8966;8967;8968;8969;8970;8971;8972;8973;8974;8975;8976;8977;8978;8979;8980;8981;8982;8983;8984;8985;8986;8987;8988;8989;8990;8991;8992;8993;8994;8995;8996;8997;8998;8999;9000;9001;9002;9003;9004;9005;9006;9007;9008;9009;9010;9011;9012;9013;9014;9015;9016;9017;9018;9019;9020;9021;9022;9023;9024;9025;9026;9027;9028;9029;9030;9031;9032;9033;9034;9035;9036;9037;9038;9039;9040;9041;9042;9043;9044;9045;9046	21781;21782;21783;21784;21785;21786;21787;21788;21789;21790;21791;21792;21793;21794;21795;21796;21797;21798;21799;21800;21801;21802;21803;21804;21805;21806;21807;21808;21809;21810;21811;21812;21813;21814;21815;21816;21817;21818;21819;21820;21821;21822;21823;21824;21825;21826;21827;21828;21829;21830;21831;21832;21833;21834;21835;21836;21837;21838;21839;21840;21841;21842;21843;21844;21845;21846;21847;21848;21849;21850;21851;21852;21853;21854;21855;21856;21857;21858;21859;21860;21861;21862;21863;21864;21865;21866;21867;21868;21869;21870;21871;21872;21873;21874;21875;21876;21877;21878;21879;21880;21881;21882;21883;21884;21885;21886;21887;21888;21889;21890;21891;21892;21893;21894;21895;21896;21897;21898;21899;21900;21901;21902;21903;21904;21905;21906;21907;21908;21909;21910;21911;21912;21913;21914;21915;21916;21917;21918;21919;21920;21921;21922;21923;21924;21925;21926;21927;21928;21929;21930;21931;21932;21933;21934;21935;21936;21937;21938;21939;21940;21941;21942;21943;21944;21945;21946;21947;21948;21949;21950;21951;21952;21953;21954;21955;21956;21957;21958;21959;21960;21961;21962;21963;21964;21965;21966;21967;21968;21969;21970;21971;21972;21973;21974;21975;21976;21977;21978;21979;21980;21981;21982;21983;21984;21985;21986;21987;21988;21989;21990;21991;21992;21993;21994;21995;21996;21997;21998;21999;22000;22001;22002;22003;22004;22005;22006;22007;22008;22009;22010;22011;22012;22013;22014;22015;22016;22017;22018;22019;22020;22021;22022;22023;22024;22025;22026;22027;22028;22029;22030;22031;22032;22033;22034;22035;22036;22037;22038;22039;22040;22041;22042;22043;22044;22045;22046;22047;22048;22049;22050	21998		269	
FSVSGEGEGDATYGKLTLK	2	0	Unmodified	1957.9633	0.96328673	57	CON__Q9U6Y5			yes	yes	0	0	1	6.2	0.98					2		3										16.208	16.208	2;3	3.1642E-38	9548	DP690-5	242.91	203.12		+	0.040052	0.042822	NaN	1	0	Median	929430000	522600000	406830000	4552	57	4266	9047;9048;9049;9050;9051	22051;22052;22053;22054;22055;22056;22057;22058;22059	22054		9	
FSVSPVVR	0	1	Unmodified	889.50215	0.50215205	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	6	3			1						1								14.747	14.747	2	0.00043225	8261	DP690-3	143.02	107.82			1.3754	1.7136	NaN	1	0	Median	136480000	125410000	11063000	4553	483	4267	9052;9053	22060;22061;22062	22060		2	9606
FSWAQGTDTILADEMGLGK	1	0	Oxidation (M)	2054.9619	0.96190652	1297	Q14839;Q8TDI0;Q12873	CHD4;CHD5;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3	yes	no	0	1	0	10	0										1							20.988	20.988	2	0.0026427	17997	DP690-10	85.163	85.163			0.9711	1.1934	NaN	1	0	Median	35161000	17224000	17938000	4554	1297	4268	9054	22063	22063	1981	1	9606
FSWNVWPSSR	0	1	Unmodified	1264.5989	0.59890598	1332;1333	Q15437;Q15436	SEC23B;SEC23A	Protein transport protein Sec23B;Protein transport protein Sec23A	no	no	0	0	0	7	4			1								1						19.951	19.951	2	0.00079747	16490	DP690-11	142.36	92.825			0.71288	0.78858	NaN	1	0	Median	50912000	2927000	47985000	4555	1333;1332	4269	9055;9056	22064;22065;22066	22065		3	9606
FSYLAVIEGAK	1	0	Unmodified	1196.6441	0.64412484	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	13	0													1				20.063	20.063	2	7.6932E-05	15512	DP690-13	138.08	94.997			0.91053	1.0124	NaN	1	0	Median	210720000	118170000	92551000	4556	521	4270	9057	22067;22068;22069;22070;22071	22071		5	9606
FTARPLVQTIFEGGK	1	1	Unmodified	1662.9093	0.90934108	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	1	11	0											1						18.192	18.192	3	6.4181E-06	14003	DP690-11	161.04	132.99			1.0263	1.1452	NaN	1	0	Median	195000000	93069000	101930000	4557	1950	4271	9058	22072;22073;22074;22075;22076	22072		5	9606
FTASAGIQVVGDDLTVTNPK	1	0	Unmodified	2032.0477	0.047685059	395	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	5	0					1												19.008	19.008	2	1.8791E-09	13107	DP690-5	145.7	145.7			1.3302	1.329	NaN	1	0	Median	26998000	12829000	14169000	4558	395	4272	9059	22077;22078;22079	22078		3	9606
FTDDYQLFEELGK	1	0	Unmodified	1603.7406	0.740604	1223	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	0	0	8	4				1								1					20.898	20.898	2	1.142E-09	16950	DP690-12	248.98	222.87			0.91615	1.035	7.5349	2	0	Median	59183000	32199000	26984000	4559	1223	4273	9060;9061	22080;22081;22082;22083;22084;22085;22086;22087	22080		8	9606
FTDEEVDELYR	0	1	Unmodified	1414.6252	0.62523989	123	O14950;P19105	MYL12B;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A	yes	no	0	0	0	12	4								1								1	17.323	17.323	2	5.6522E-06	10646	DP690-8	243.03	185.17			0.98131	1.1092	21.453	2	0	Median	71775000	37785000	33990000	4560	123	4274	9062;9063	22088;22089;22090;22091;22092;22093;22094	22091		7	9606
FTDELMEQGLTYK	1	0	Unmodified	1573.7334	0.73341013	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										1							18.442	18.442	2	0.00032074	14513	DP690-10	113.38	92.949			0.79336	0.97672	NaN	1	0	Median	50754000	25050000	25704000	4561	1783	4275	9064	22095;22096	22095		2	9606
FTDELMEQGLTYK	1	0	Oxidation (M)	1589.7283	0.72832476	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	1	0	10	0										1							16.67	16.67	2	0.01378	11976	DP690-10	99.343	64.588			NaN	NaN	NaN	0	0	Median	22571000	0	22571000	4562	1783	4275	9065	22097	22097	2350	1	9606
FTDEYQLFEELGK	1	0	Unmodified	1617.7563	0.75625407	1224	Q13557	CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit delta	yes	yes	0	0	0	12.5	0.5												1	1				21.086	21.086	2	7.9202E-05	16834	DP690-13	173.64	154.68			0.80883	0.95752	6.5002	2	0	Median	70441000	39220000	31220000	4563	1224	4276	9066;9067	22098;22099;22100	22099		3	9606
FTEIWCPQSTSR	0	1	Unmodified	1510.6875	0.68746299	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								17.016	17.016	2	0.01201	11218	DP690-9	103.26	75.611			NaN	NaN	NaN	0	0	Median	4546800	4546800	0	4564	2217	4277	9068	22101;22102	22102		2	9606
FTEYETQVK	1	0	Unmodified	1143.5448	0.54480473	1185	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	13.5	0.5													1	1			12.946	12.946	2	0.00011861	5854	DP690-13	171.53	114.25			0.80598	0.90311	3.9511	2	0	Median	1162900000	641150000	521780000	4565	1185	4278	9069;9070	22103;22104;22105;22106;22107;22108	22105		6	9606
FTFGLDWVPK	1	0	Unmodified	1208.623	0.62299547	746	P45974;Q92995	USP5;USP13	Ubiquitin carboxyl-terminal hydrolase 5;Ubiquitin carboxyl-terminal hydrolase 13	yes	no	0	0	0	3	0			1														21.782	21.782	2	0.012126	17325	DP690-3	80.688	54.304			0.73845	0.77562	NaN	1	0	Median	6400200	3835900	2564300	4566	746	4279	9071	22109;22110;22111;22112	22110		4	9606
FTFYDGPPFATGLPHYGHILAGTIK	1	0	Unmodified	2719.3799	0.37985866	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	10	0										1							20.342	20.342	4	0.0062812	17323	DP690-10	52.91	36.586			0.5724	0.70386	NaN	1	0	Median	48171000	32631000	15540000	4567	721	4280	9072	22113	22113		1	9606
FTGATIFEEYAR	0	1	Unmodified	1403.6721	0.67213051	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	0	0	3	0			1														19.461	19.461	2	7.9683E-25	14441	DP690-3	215.93	167.14			NaN	NaN	NaN	0	0	Median	32461000	0	32461000	4568	2061	4281	9073	22114;22115	22115		2	9606
FTHAFSSDLMR	0	1	Oxidation (M)	1326.6027	0.60267073	2187	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	1	0	7	0							1										13.232	13.232	3	0.0041445	6187	DP690-7	78.548	55.828			0.81302	0.88256	NaN	1	0	Median	82349000	43632000	38718000	4569	2187	4282	9074	22116;22117;22118	22117	2664	3	9606
FTIENVTR	0	1	Unmodified	978.51345	0.51344502	2205	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	0	0	0	15	0															1		15.213	15.213	2	0.054095	9004	DP690-15	113.5	67.484			1.0286	1.1564	NaN	1	0	Median	63711000	31567000	32144000	4570	2205	4283	9075	22119	22119		0	9606
FTITPPTAQVVGVLK	1	0	Unmodified	1569.913	0.91302948	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	10	3.74						1	1	1						1	1		19.883	19.883	2	3.1732E-07	13855	DP690-6	192.5	174.31			0.66971	0.77251	4.9456	5	0	Median	747200000	427570000	319630000	4571	864	4284	9076;9077;9078;9079;9080	22120;22121;22122;22123;22124;22125;22126;22127;22128;22129;22130;22131;22132;22133;22134;22135;22136	22131		17	9606
FTLDCTHPVEDGIMDAANFEQFLQER	0	1	Oxidation (M)	3098.375	0.37498557	665	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	1	0	16	0																2	22.363	22.363	3	0.00017863	16656	DP690-16	76.471	68.828			0.72775	0.85077	4.8683	2	0	Median	4472900	2671000	1801900	4572	665	4285	9081;9082	22137;22138;22139;22140;22141;22142;22143;22144;22145;22146	22138	936	10	9606
FTLPTDHALAEK	1	0	Unmodified	1341.6929	0.69286595	1455	Q658P3	STEAP3	Metalloreductase STEAP3	yes	yes	0	0	0	13	0													1				15.195	15.195	3	0.00016688	9050	DP690-13	105.36	56.361			0.58356	0.67352	NaN	1	0	Median	78809000	58711000	20099000	4573	1455	4286	9083	22147;22148	22148		2	9606
FTNDPYPLFVTWK	1	0	Unmodified	1626.8082	0.80823006	1467	Q6DCA0	AMMECR1L	AMMECR1-like protein	yes	yes	0	0	0	14	0														1			21.464	21.464	2	0.0081534	17489	DP690-14	75.739	51.668			0.8181	0.96933	NaN	1	0	Median	12612000	6392900	6219500	4574	1467	4287	9084	22149	22149		1	9606
FTNMLGQPGSTALDLFK	1	0	Unmodified	1838.9237	0.92367052	254	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	11	0											1						21.906	21.906	2	0.0030923	19134	DP690-11	91.845	70.599			0.87485	1.0654	NaN	1	0	Median	35958000	16887000	19071000	4575	254	4288	9085	22150;22151	22151		2	9606
FTPGTFTNQIQAAFR	0	1	Unmodified	1697.8526	0.85255449	428	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	12	4.32						1								1		1	20.47	20.47	2	2.7206E-14	16142	DP690-14	225.93	201.24			0.81345	0.87935	17.847	3	0	Median	780650000	434180000	346470000	4576	428	4289	9086;9087;9088	22152;22153;22154;22155;22156;22157;22158;22159;22160;22161	22154		10	9606
FTPGTFTNQIQAAFREPR	0	2	Unmodified	2080.049	0.049022463	428	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	1	14	0														2			19.244	19.244	2;3	1.8003E-06	14507	DP690-14	128.74	104.69			0.79773	0.93747	NaN	1	0	Median	1061599999.9999999	577400000	484160000	4577	428	4290	9089;9090	22162;22163;22164;22165	22162		4	9606
FTQAGSEVSALLGR	0	1	Unmodified	1434.7467	0.74669243	392	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	13	0													1				18.635	18.635	2	5.0212E-05	13696	DP690-13	156.01	138.27			0.88713	1.0691	NaN	1	0	Median	81731000	41496000	40235000	4578	392	4291	9091	22166;22167;22168;22169	22166		4	9606
FTQDTQPHYIYSPR	0	1	Unmodified	1751.8267	0.82673367	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								13.772	13.772	3	2.6969E-05	6762	DP690-9	147.73	121.44			0.87065	0.96066	7.7992	2	0	Median	72377000	38878000	33499000	4579	1264	4292	9092;9093	22170;22171;22172;22173;22174;22175;22176;22177	22175		8	9606
FTSGAFLSPSVSVQECR	0	1	Unmodified	1870.8883	0.88834765	867	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	11	0											1						17.828	17.828	2	0.00016518	13456	DP690-11	160.84	129.37			NaN	NaN	NaN	0	0	Median	0	0	0	4580	867	4293	9094	22178	22178		1	9606
FTSQQGPIKPVSPNSSPFGTDYR	1	1	Unmodified	2509.2238	0.22375194	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	1	11	0											1						15.994	15.994	3	0.00053487	10884	DP690-11	78.531	65.854			0.66452	0.75968	NaN	1	0	Median	137860000	84049000	53814000	4581	2302	4294	9095	22179;22180;22181	22179		3	9606
FTTDDSICVLGISK	1	0	Unmodified	1554.76	0.75995923	1089	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	3	0			3														18.837	18.837	2	0.004216	13666	DP690-3	126.71	75.433			NaN	NaN	NaN	0	0	Median	8163600	8163600	0	4582	1089	4295	9096;9097;9098	22182;22183;22184;22185	22184		4	9606
FTVDTISAGQGDVMVFVEDPEGNKEEAQVTPDSDKNK	3	0	Oxidation (M)	4011.8532	0.85315052	250	O75369	FLNB	Filamin-B	yes	yes	0	1	2	10	0										1							18.171	18.171	4	2.547E-10	14123	DP690-10	77.573	77.573			0.66284	0.71088	NaN	1	0	Median	111970000	60311000	51662000	4583	250	4296	9099	22186	22186	240	1	9606
FTVLFPSGTPLPAR	0	1	Unmodified	1501.8293	0.82929985	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	12.5	0.5												1	1				20.079	20.079	2	0.001651	15579	DP690-13	92.611	70.94			0.72612	0.8902	NaN	1	0	Median	32939000	7827400	25111000	4584	1147	4297	9100;9101	22187;22188;22189;22190	22190		4	9606
FTVNLSGCPR	0	1	Unmodified	1149.5601	0.56007764	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	4	0				3													15.601	15.601	2	0.022671	9382	DP690-4	99.136	46.733			NaN	NaN	NaN	0	0	Median	0	0	0	4585	2000	4298	9102;9103;9104	22191;22192;22193	22193		3	9606
FTYCSQVLGLHCYK	1	0	Unmodified	1774.8171	0.81709696	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	12	0												5					16.316	16.316	2;3	1.8308E-05	10918	DP690-12	169.21	169.21			0.93695	1.0795	5.4107	2	0	Median	258500000	146790000	111710000	4586	1269	4299	9105;9106;9107;9108;9109	22194;22195;22196;22197;22198;22199;22200;22201	22198		8	9606
FTYYTILDIFR	0	1	Unmodified	1450.7497	0.74965254	1834	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	13	0													1				24.717	24.717	2	0.0045737	21045	DP690-13	89.029	89.029			0.80297	0.92431	NaN	1	0	Median	1856700	1251500	605220	4587	1834	4300	9110	22202	22202		1	9606
FVAIIIEASGGGAFLVLPLHK	1	0	Unmodified	2151.2456	0.24559701	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	13	0													2				22.988	22.988	3	0.00090721	19088	DP690-13	109.72	90.782			NaN	NaN	NaN	0	0	Median	0	0	0	4588	2395	4301	9111;9112	22203;22204	22204		2	9606
FVAPEEVLPFTEGDILEK	1	0	Unmodified	2032.0405	0.040474416	806	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	yes	yes	0	0	0	14	0														1			22.22	22.22	2	0.0097106	18422	DP690-14	101.3	67.254			NaN	NaN	NaN	0	0	Median	6456200	0	6456200	4589	806	4302	9113	22205;22206	22205		2	9606
FVASCGFTPDVK	1	0	Unmodified	1326.6278	0.62782285	2489	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	13	0													1				15.8	15.8	2	0.00043574	9915	DP690-13	141.95	104.45			NaN	NaN	NaN	0	0	Median	36083000	36083000	0	4590	2489	4303	9114	22207;22208	22208		2	9606
FVASYLEYAFR	0	1	Unmodified	1364.6765	0.6764876	1863	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	12	0												1					20.802	20.802	2	0.00011612	16872	DP690-12	172.25	150.26			0.86723	1.0301	NaN	1	0	Median	37499000	20917000	16581000	4591	1863	4304	9115	22209;22210;22211;22212	22209		4	9606
FVCQSSSIDFLASQGFDFNK	1	0	Unmodified	2296.047	0.047033132	325	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	0	0	11	0											1						21.606	21.606	2	0.00013203	18781	DP690-11	113.4	97.871			0.70763	0.86955	NaN	1	0	Median	9290000	6268500	3021500	4592	325	4305	9116	22213	22213		1	9606
FVCVGGSPSR	0	1	Unmodified	1064.5073	0.50731378	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	0	0	10	4						1								1			12.17	12.17	2	9.3315E-05	4919	DP690-14	149.65	96.97			0.86002	0.97955	6.456	2	0	Median	180690000	95741000	84948000	4593	1372	4306	9117;9118	22214;22215;22216;22217;22218;22219	22217		6	9606
FVCYCEGEESGEGDR	0	1	Unmodified	1792.6669	0.66686349	2011	Q9BUH6	C9orf142	Protein PAXX	yes	yes	0	0	0	15	0															1		13.61	13.61	2	5.2721E-15	6912	DP690-15	227.81	227.81			1.1417	1.3266	NaN	1	0	Median	27038000	12937000	14101000	4594	2011	4307	9119	22220;22221;22222;22223	22222		4	9606
FVDFNDPNFGDELK	1	0	Unmodified	1655.7468	0.74675201	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	9	0									1								19.852	19.852	2	0.0066303	14695	DP690-9	83.397	83.397			0.47757	0.59086	NaN	1	0	Median	3734000	1913200	1820800	4595	2483	4308	9120	22224	22224		1	9606
FVDGLMIHSGDPVNYYVDTAVR	0	1	Oxidation (M)	2483.1791	0.17910994	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	11	4							1								1		19.102	19.102	3	1.395E-06	14075	DP690-15	132.6	100.97			1.0116	1.1543	17.821	2	0	Median	82460000	41397000	41064000	4596	569	4309	9121;9122	22225;22226;22227;22228;22229;22230;22231;22232;22233	22226	755	9	9606
FVDHVFDEQVIDSLTVK	1	0	Unmodified	1990.0048	0.004757612	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	9	0									1								20.185	20.185	3	0.08308	15139	DP690-9	31.514	8.8616			0.77979	0.96373	NaN	1	0	Median	3601200	2284700	1316500	4597	375	4310	9123	22234	22234		1	9606
FVELHFDELPSSELETILHK	1	0	Unmodified	2382.2107	0.21072764	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								21.117	21.117	4	0.00019421	16153	DP690-9	92.39	77.841			0.94818	1.2118	NaN	1	0	Median	11350000	6329900	5020500	4598	2217	4311	9124	22235;22236;22237	22235		3	9606
FVELPGAEMGK	1	0	Oxidation (M)	1192.5798	0.57981002	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	1	0	6	4		1								1							15.096	15.096	2	0.0040121	7829	DP690-2	94.409	72.323			0.58012	0.64731	35.773	2	0	Median	129530000	94806000	34727000	4599	408	4312	9125;9126	22238;22239;22240	22239	447	3	9606
FVELPGAEMGK	1	0	Unmodified	1176.5849	0.5848954	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	2	0		1															16.798	16.798	2	0.0019371	9883	DP690-2	98.582	55.718			0.86475	0.8625	NaN	1	0	Median	3843900	1999400	1844500	4600	408	4312	9127	22241;22242	22242		2	9606
FVESILSNNTTDDHCQEFVNQK	1	0	Unmodified	2624.1813	0.18129478	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															16.493	16.493	3	0.00014565	9550	DP690-2	106.67	89.194			1.2581	1.2634	NaN	1	0	Median	6365600	2964100	3401400	4601	1555	4313	9128	22243;22244;22245	22244		3	9606
FVFGSESVK	1	0	Unmodified	998.5073	0.50729701	808;16;446	P49792;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	0	9.5	0.5									1	1							15.582	15.582	2	0.001952	9265	DP690-9	115.49	46.707			0.8407	1.0519	8.8184	2	0	Median	130860000	69492000	61372000	4602	808;16;446	4314	9129;9130	22246;22247;22248	22248		3	9606
FVGQDVEGER	0	1	Unmodified	1134.5306	0.53055165	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	5.25	1.64				2	1			1									12.793	12.793	1;2	2.8861E-05	5530	DP690-4	176.09	134.66			1.6015	0.94831	31.741	3	0	Plateau	452360000	206570000	245790000	4603	516	4315	9131;9132;9133;9134	22249;22250;22251;22252;22253;22254;22255;22256;22257;22258	22249		10	9606
FVHFIDAPSLALIMPIVQR	0	1	Oxidation (M)	2182.1973	0.1972666	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	1	0	6	4		1								1							21.436	21.436	3	6.209E-10	18741	DP690-10	149.59	134.58			0.92357	1.0364	24.081	2	0	Median	142190000	82044000	60148000	4604	1782	4316	9135;9136	22259;22260;22261;22262;22263;22264;22265	22261	2344	7	9606
FVHFIDAPSLALIMPIVQR	0	1	Unmodified	2166.2024	0.20235198	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	9	0									1								22.975	22.975	3	0.0010913	18339	DP690-9	75.018	59.996			0.68833	0.82093	NaN	1	0	Median	1469500	821030	648470	4605	1782	4316	9137	22266	22266		1	9606
FVHSENQHLVSPEALDFLDK	1	0	Unmodified	2324.1437	0.14371071	1035	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	14	0														3			17.905	17.905	3;4	4.4289E-05	12816	DP690-14	113.63	94.699			0.73937	0.89396	1.9773	2	0	Median	158050000	83840000	74213000	4606	1035	4317	9138;9139;9140	22267;22268;22269;22270;22271;22272;22273	22269		7	9606
FVIATSTK	1	0	Unmodified	865.49092	0.49091866	1098	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	14	0														1			13.041	13.041	2	0.071236	6163	DP690-14	89.296	53.11			NaN	NaN	NaN	0	0	Median	34415000	0	34415000	4607	1098	4318	9141	22274	22274		1	9606
FVIFPTDLEIYK	1	0	Unmodified	1483.7963	0.79626839	1617	Q8IXQ6	PARP9	Poly [ADP-ribose] polymerase 9	yes	yes	0	0	0	11	0											1						22.241	22.241	2	0.0013337	19630	DP690-11	101.38	80.547			0.76734	0.94042	NaN	1	0	Median	21798000	10935000	10863000	4608	1617	4319	9142	22275;22276	22276		2	9606
FVIGGPQGDAGLTGR	0	1	Unmodified	1443.747	0.74702678	634	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	5	0					1												16.704	16.704	2	3.0817E-09	10172	DP690-5	196.16	196.16			0.80484	0.8259	NaN	1	0	Median	286500000	162090000	124400000	4609	634	4320	9143	22277;22278;22279;22280;22281	22278		5	9606
FVIHPESNNLIIIETDHNAYTEATK	1	0	Unmodified	2868.4294	0.42938762	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10	0										1							17.735	17.735	4	0.0075222	13511	DP690-10	69.071	45.862			NaN	NaN	NaN	0	0	Median	39018000	0	39018000	4610	1329	4321	9144	22282;22283	22283		2	9606
FVIKPIDKK	3	0	Unmodified	1086.6801	0.68011642	498	P26038;P35241;P15311	MSN;RDX;EZR	Moesin;Radixin;Ezrin	yes	no	0	0	2	4	0				1													10.858	10.858	2	0.062078	3278	DP690-4	75.043	8.614			1.5145	1.5409	NaN	1	0	Median	3395500	1458100	1937400	4611	498	4322	9145	22284	22284		0	9606
FVINYDYPNSSEDYIHR	0	1	Unmodified	2130.9647	0.96468371	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	11	1.41									1			2					17.555	17.555	2;3	4.4291E-33	12589	DP690-12	308.37	238.65			0.79925	0.95648	8.6915	3	0	Median	933550000	520510000	413030000	4612	517	4323	9146;9147;9148	22285;22286;22287;22288;22289;22290;22291;22292;22293	22292		9	9606
FVINYDYPNSSEDYVHR	0	1	Unmodified	2116.949	0.94903365	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11.2	0.433											3	1					17.067	17.067	2;3	2.2366E-18	12368	DP690-11	222.88	208.93			0.75426	0.77819	8.9109	3	0	Plateau	948580000	521500000	427080000	4613	1793	4324	9149;9150;9151;9152	22294;22295;22296;22297;22298;22299;22300;22301;22302;22303;22304;22305;22306;22307;22308	22298		15	9606
FVIQGAGAK	1	0	Unmodified	889.50215	0.50215205	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							12.854	12.854	2	0.012933	6343	DP690-10	107.43	59.188			NaN	NaN	NaN	0	0	Median	48903000	0	48903000	4614	1782	4325	9153	22309;22310	22309		2	9606
FVKEPAFEDITLESER	1	1	Unmodified	1908.9469	0.94690838	254	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	1	11	0											1						17.393	17.393	3	0.0003046	12836	DP690-11	99.915	74.461			0.64974	0.76021	NaN	1	0	Median	98957000	59401000	39556000	4615	254	4326	9154	22311;22312	22311		2	9606
FVLDHEDGLNLNEDLENFLQK	1	0	Unmodified	2501.2074	0.20743318	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10.5	0.5										1	1						22.543	22.543	3	0.0018813	20135	DP690-10	68.168	49.232			NaN	NaN	NaN	0	0	Median	17677000	17677000	0	4616	1301	4327	9155;9156	22313;22314	22313		2	9606
FVLDKVPFLSSLEGHIYLK	2	0	Unmodified	2204.2245	0.22452721	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	10	0										1							21.763	21.763	4	0.037343	19138	DP690-10	66.201	41.695			NaN	NaN	NaN	0	0	Median	17929000	17929000	0	4617	2190	4328	9157	22315;22316	22315		2	9606
FVLINWTGEGVNDVR	0	1	Unmodified	1717.8788	0.87876924	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	12	0												1					20.802	20.802	2	0.026645	16810	DP690-12	113.22	48.571			NaN	NaN	NaN	0	0	Median	3645800	3645800	0	4618	2361	4329	9158	22317	22317		1	9606
FVLITDILDTFGK	1	0	Unmodified	1480.8177	0.81773211	1540	Q7Z3J2	C16orf62	UPF0505 protein C16orf62	yes	yes	0	0	0	11	0											1						25.653	25.653	2	0.00033213	23551	DP690-11	112.85	78.924			0.9227	1.1093	NaN	1	0	Median	4584200	2421700	2162500	4619	1540	4330	9159	22318;22319	22318		2	9606
FVLLSAQGSLMFHK	1	0	Unmodified	1576.8436	0.8435697	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10	0										1							19.016	19.016	3	1.6163E-05	15341	DP690-10	136.01	136.01			0.93294	1.1468	NaN	1	0	Median	44081000	25948000	18133000	4620	272	4331	9160	22320;22321;22322	22321		3	9606
FVLPLQDHTIK	1	0	Unmodified	1309.7394	0.73942221	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	7	4			1								1						16.463	16.463	3	0.00014748	11523	DP690-11	115.7	115.7			1.2323	1.4052	87.297	2	0	Median	93607000	52231000	41377000	4621	877	4332	9161;9162	22323;22324;22325;22326	22323		4	9606
FVLPLQDHTIKK	2	0	Unmodified	1437.8344	0.83438523	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	11	0											1						14.406	14.406	3	0.016857	8565	DP690-11	57.885	57.885			0.74254	0.8567	NaN	1	0	Median	88931000	49613000	39318000	4622	877	4333	9163	22327;22328	22327		2	9606
FVLSGANIMCPGLTSPGAK	1	0	Oxidation (M)	1934.9594	0.9594041	2386	Q9ULC4;A0A3B3IRV3	MCTS1	Malignant T-cell-amplified sequence 1	yes	no	0	1	0	15.5	0.5															1	1	18.093	18.093	2	2.1527E-09	12827	DP690-15	151.22	112.07			0.83539	0.98163	14.563	2	0	Median	20958000	10598000	10359000	4623	2386	4334	9164;9165	22329;22330;22331;22332;22333;22334	22331	2818	6	9606
FVLSQAKDEL	1	0	Unmodified	1148.6077	0.60773933	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	1	5	0					1												16.994	16.994	2	0.03173	10553	DP690-5	86.136	42.694			1.5412	1.5337	NaN	1	0	Median	116640000	47093000	69545000	4624	1675	4335	9166	22335;22336	22335		2	9606
FVMEVEVDGQK	1	0	Oxidation (M)	1295.6068	0.60675306	1170	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	yes	no	0	1	0	11	0											1						13.792	13.792	2	0.00058876	7626	DP690-11	118.18	99.397			1.05	1.2672	NaN	1	0	Median	48923000	23672000	25251000	4625	1170	4336	9167	22337;22338	22337	1820	2	9606
FVMQEEFSR	0	1	Oxidation (M)	1187.5281	0.52810881	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	1	0	4	0				1													13.506	13.506	2	0.0011255	6493	DP690-4	141.52	115.13			1.0376	1.1451	NaN	1	0	Median	44994000	22454000	22540000	4626	623	4337	9168	22339;22340;22341	22339	855	3	9606
FVNVVPTFGK	1	0	Unmodified	1106.6124	0.61243078	998	P62861	FAU	40S ribosomal protein S30	yes	yes	0	0	0	16	0																1	17.912	17.912	2	0.00010534	12151	DP690-16	143.03	109.11			0.84313	0.93546	NaN	1	0	Median	77742000	41827000	35915000	4627	998	4338	9169	22342;22343;22344;22345;22346	22344		5	9606
FVNWQVDGEYR	0	1	Unmodified	1411.6521	0.65206377	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	14	0														1			17.118	17.118	2	0.00010141	11825	DP690-14	132.01	93.924			0.70038	0.83577	NaN	1	0	Median	107100000	59013000	48086000	4628	348	4339	9170	22347;22348;22349	22347		3	9606
FVPAEMGTHTVSVK	1	0	Oxidation (M)	1517.7548	0.75481428	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	8.83	3.34		1							2	2			1				11.883	11.883	2;3	0.0018877	4968	DP690-10	98.898	62.517			0.7732	0.9249	11.578	6	0	Median	852330000	481300000	371030000	4629	549	4340	9171;9172;9173;9174;9175;9176	22350;22351;22352;22353;22354;22355;22356;22357;22358;22359;22360;22361;22362;22363;22364;22365;22366;22367;22368;22369;22370	22356	705	21	9606
FVPAEMGTHTVSVK	1	0	Unmodified	1501.7599	0.75989966	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	0										2							13.85	13.85	2;3	1.6328E-05	7803	DP690-10	122.18	97.668			0.85463	1.0071	3.5391	2	0	Median	598420000	318010000	280410000	4630	549	4340	9177;9178	22371;22372;22373;22374;22375;22376;22377;22378	22375		8	9606
FVPFAAVAAANCINIPLMR	0	1	Oxidation (M)	2090.0805	0.080522288	2030;2145	Q9BWM7;Q9H9B4	SFXN3;SFXN1	Sideroflexin-3;Sideroflexin-1	no	no	0	1	0	14	0														1			21.898	21.898	2	0.0016564	18049	DP690-14	90.434	63.465			0.71543	0.88972	NaN	1	0	Median	8424700	5706700	2718000	4631	2030;2145	4341	9179	22379;22380;22381;22382	22380	2564	4	9606
FVPFAAVAAANCINIPLMR	0	1	Unmodified	2074.0856	0.085607665	2030;2145	Q9BWM7;Q9H9B4	SFXN3;SFXN1	Sideroflexin-3;Sideroflexin-1	no	no	0	0	0	14	0														2			23.296	23.296	2	1.3622999999999999E-19	19693	DP690-14	195.83	136.26			NaN	NaN	NaN	0	0	Median	3511400	3511400	0	4632	2030;2145	4341	9180;9181	22383;22384;22385	22384		3	9606
FVPLLPGNR	0	1	Unmodified	1011.5866	0.58655038	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7.8	2.93		1							3	1							17.019	17.019	2	0.01416	12433	DP690-10	85.359	51.621			0.77982	0.84316	6.1663	2	0	Median	632600000	298810000	333790000	4633	1046	4342	9182;9183;9184;9185;9186	22386;22387;22388;22389;22390;22391;22392;22393;22394	22387		9	9606
FVPQEMGPHTVAVK	1	0	Oxidation (M)	1554.7864	0.78644876	1270	Q14315	FLNC	Filamin-C	yes	yes	0	1	0	6	4		1								1							12.118	12.118	2;3	0.0019901	5273	DP690-10	82.515	34.876			0.82537	0.87609	9.7283	2	0	Median	410450000	227440000	183010000	4634	1270	4343	9187;9188	22395;22396;22397;22398;22399;22400	22395	1946	6	9606
FVPQEMGPHTVAVK	1	0	Unmodified	1538.7915	0.79153413	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										2							13.794	13.794	2;3	0.016092	7790	DP690-10	83.087	57.107			NaN	NaN	NaN	0	0	Median	112680000	12530000	100150000	4635	1270	4343	9189;9190	22401;22402;22403	22403		3	9606
FVPQEMGVHTVSVK	1	0	Unmodified	1556.8021	0.80209882	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							14.474	14.474	3	0.024333	8789	DP690-10	76.868	42.685			NaN	NaN	NaN	0	0	Median	116750000	116750000	0	4636	250	4344	9191	22404	22404		1	9606
FVPYLIAGIQHSCQDIGAK	1	0	Unmodified	2116.0775	0.0775454	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	4	0				1													18.707	18.707	3	4.7697E-05	13165	DP690-4	115.73	84.613			1.0974	1.2033	NaN	1	0	Median	13325000	5831000	7493600	4637	474	4345	9192	22405;22406;22407;22408	22406		4	9606
FVQCPDGELQK	1	0	Unmodified	1319.618	0.61798644	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	13	0													3				13.117	13.117	2	0.0013772	6185	DP690-13	140.83	101.69			NaN	NaN	NaN	0	0	Median	60716000	60716000	0	4638	2427	4346	9193;9194;9195	22409;22410;22411;22412	22412		4	9606
FVQLINTVLNGDQHFMSALDK	1	0	Oxidation (M)	2405.2049	0.20493076	1228	Q13617	CUL2	Cullin-2	yes	yes	0	1	0	3	0			1														20.783	20.783	3	0.0029802	16114	DP690-3	92.098	57.824			NaN	NaN	NaN	0	0	Median	11396000	0	11396000	4639	1228	4347	9196	22413;22414	22413	1877	2	9606
FVQNVTSDLQLAAEFAAK	1	0	Unmodified	1951.0051	0.005091963	1065	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	11	0											2						22.096	22.096	2	0.0001587	19350	DP690-11	158.58	107.68			NaN	NaN	NaN	0	0	Median	0	0	0	4640	1065	4348	9197;9198	22415;22416	22415		2	9606
FVQVSEDSGR	0	1	Unmodified	1122.5306	0.53055165	234	O75044;P0DMP2;P0DJJ0	SRGAP2;SRGAP2B;SRGAP2C	SLIT-ROBO Rho GTPase-activating protein 2;SLIT-ROBO Rho GTPase-activating protein 2B;SLIT-ROBO Rho GTPase-activating protein 2C	yes	no	0	0	0	11	0											1						12.153	12.153	2	0.010984	5149	DP690-11	82.287	50.983			1.0458	1.2567	NaN	1	0	Median	68461000	36585000	31875000	4641	234	4349	9199	22417;22418	22418		2	9606
FVSISDLLVPK	1	0	Unmodified	1216.7067	0.7067251	816	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	5	0					1												21.646	21.646	2	0.0020702	16367	DP690-5	97.431	54.348			1.0709	1.0722	NaN	1	0	Median	12676000	5299400	7376900	4642	816	4350	9200	22419;22420	22419		2	9606
FVSSLLTALFR	0	1	Unmodified	1252.718	0.71795849	2234	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	10	0										1							23.716	23.716	2	0.00029452	21642	DP690-10	123.35	104.61			0.81948	1.0245	NaN	1	0	Median	15871000	8893700	6977600	4643	2234	4351	9201	22421;22422;22423;22424;22425	22424		5	9606
FVSSPQTIVELFFQEVAR	0	1	Unmodified	2096.0942	0.094241321	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	9.5	0.5									1	1							27.362	27.362	2	0.0004188	25537	DP690-10	126.09	104.86			0.71382	0.86693	NaN	1	0	Median	4064700	2283200	1781500	4644	1156	4352	9202;9203	22426;22427;22428	22427		3	9606
FVTDIDELGKDLLLK	2	0	Unmodified	1717.9502	0.95020285	1072	Q00534	CDK6	Cyclin-dependent kinase 6	yes	yes	0	0	1	6	0						1											21.313	21.313	3	0.0058073	15511	DP690-6	70.373	49.664			1.4435	1.4922	NaN	1	0	Median	1976900	763610	1213200	4645	1072	4353	9204	22429;22430;22431	22429		3	9606
FVVPKPR	1	1	Unmodified	841.51741	0.51740818	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	10	0										2							11.841	11.841	2	0.032984	5063	DP690-10	122.5	104.94			0.70192	0.77662	14.906	2	0	Median	1041899999.9999999	609630000	432270000	4646	1070	4354	9205;9206	22432;22433	22433		0	9606
FVVQNVSAQK	1	0	Unmodified	1118.6084	0.60840804	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														12.952	12.952	2	0.00017411	5811	DP690-3	131.62	131.62			1.1124	1.1536	NaN	1	0	Median	76953000	36212000	40741000	4647	1778	4355	9207	22434;22435;22436;22437	22434		4	9606
FVVYNVYMAGR	0	1	Unmodified	1317.654	0.65397802	1892	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	12	0												1					18.312	18.312	2	0.010392	13662	DP690-12	77.732	49.005			0.59787	0.71634	NaN	1	0	Median	23833000	15209000	8623200	4648	1892	4356	9208	22438	22438		1	9606
FWEGDFHR	0	1	Unmodified	1092.4777	0.47772821	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														14.712	14.712	3	0.027259	8283	DP690-3	77.923	40.578			NaN	NaN	NaN	0	0	Median	0	0	0	4649	797	4357	9209	22439	22439		1	9606
FWESPETVSQLDSVR	0	1	Unmodified	1778.8475	0.84752869	1796	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	10	0										1							18.767	18.767	2	0.070675	14953	DP690-10	84.169	39.869			NaN	NaN	NaN	0	0	Median	0	0	0	4650	1796	4358	9210	22440	22440		1	9606
FWEVISDEHGIDPTGTYHGDSDLQLDR	0	1	Unmodified	3101.4003	0.40027234	406	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	9	4					2								2				18.922	18.922	3;4	2.5839E-17	12946	DP690-5	172.8	62.394			0.94046	1.0114	6.8704	4	0	Median	2104799999.9999998	962780000	1142100000	4651	406	4359	9211;9212;9213;9214	22441;22442;22443;22444;22445;22446;22447;22448;22449;22450;22451;22452;22453;22454	22446		14	9606
FWEVISDEHGIDPTGTYHGDSDLQLER	0	1	Unmodified	3115.4159	0.4159224	1034;370	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	5	0					1												18.804	18.804	3	5.0535E-33	12899	DP690-5	206.92	200.89			0.65496	0.68108	NaN	1	0	Median	69298000	31590000	37708000	4652	1034;370	4360	9215	22455;22456;22457;22458	22456		4	9606
FWQTYSSAEEVLQK	1	0	Unmodified	1714.8203	0.82025131	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														18.398	18.398	2	0.0010098	13098	DP690-3	100.69	63.495			0.75693	0.81407	NaN	1	0	Median	18873000	10359000	8513200	4653	5	4361	9216	22459;22460;22461;22462;22463;22464	22460		6	9606
FWSLEDGLNR	0	1	Unmodified	1235.5935	0.59348625	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	0	15	0															1		19.357	19.357	2	0.027627	14413	DP690-15	71.692	34.134			0.86634	0.99942	NaN	1	0	Median	8566100	4512900	4053200	4654	1983	4362	9217	22465	22465		1	9606
FYDDAIVSQK	1	0	Unmodified	1184.5714	0.57135383	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							15.053	15.053	2	0.00046711	9599	DP690-10	119.62	77.278			1.1953	1.4656	NaN	1	0	Median	164700000	75734000	88962000	4655	269	4363	9218	22466;22467;22468	22467		3	9606
FYEAFSK	1	0	Unmodified	890.41742	0.41741937	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	3	0			1														14.499	14.499	2	0.0087145	7905	DP690-3	128.86	71.05			NaN	NaN	NaN	0	0	Median	205160000	205160000	0	4656	416	4364	9219	22469;22470	22470		2	9606
FYEEVHDLER	0	1	Unmodified	1335.6095	0.60953025	896;1955	P55209;Q99733	NAP1L1;NAP1L4	Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4	no	no	0	0	0	4	0				2													14.239	14.239	2	0.00023688	7549	DP690-4	126.24	102.87			1.0687	1.2331	NaN	1	0	Median	18241000	7942300	10299000	4657	896;1955	4365	9220;9221	22471;22472;22473	22472		3	9606
FYEGVVELSLTAAEK	1	0	Unmodified	1654.8454	0.84540342	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10	0										1							20.365	20.365	2	0.00042765	17297	DP690-10	108.59	84.095			0.87088	1.0743	NaN	1	0	Median	89716000	47670000	42046000	4658	272	4366	9222	22474;22475	22475		2	9606
FYEQMNGPVAGASR	0	1	Oxidation (M)	1541.6933	0.69327665	617	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	1	0	12	4.32						1								1		1	12.773	12.773	2	3.635E-05	5422	DP690-6	136.96	122.28			0.82683	0.98408	44.384	3	0	Median	133160000	71945000	61213000	4659	617	4367	9223;9224;9225	22476;22477;22478;22479;22480;22481;22482;22483;22484;22485	22483	852	10	9606
FYEQMNGPVAGASR	0	1	Unmodified	1525.6984	0.69836203	617	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	14	0														1			14.57	14.57	2	8.9146E-14	8259	DP690-14	215.04	195.91			0.87021	1.0357	NaN	1	0	Median	112910000	64426000	48487000	4660	617	4367	9226	22486;22487;22488;22489;22490	22488		5	9606
FYEQVVQAIQR	0	1	Unmodified	1379.7197	0.7197494	1988	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	13	0													1				17.617	17.617	2	9.3146E-05	12364	DP690-13	157.91	122.37			0.94598	1.1406	NaN	1	0	Median	79428000	43948000	35480000	4661	1988	4368	9227	22491;22492;22493;22494	22493		4	9606
FYFENALSK	1	0	Unmodified	1117.5444	0.5444108	1224	Q13557	CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit delta	yes	yes	0	0	0	13	0													1				17.88	17.88	2	0.022882	12642	DP690-13	121.09	51.464			NaN	NaN	NaN	0	0	Median	0	0	0	4662	1224	4369	9228	22495	22495		1	9606
FYFENLLSK	1	0	Unmodified	1159.5914	0.59136099	1223	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	0	0	8	4				1								1					20.539	20.539	2	0.00067873	16545	DP690-12	141.52	83.29			0.92933	1.0411	1.4586	2	0	Median	104320000	54225000	50093000	4663	1223	4370	9229;9230	22496;22497;22498;22499;22500	22496		5	9606
FYFLEAYNAK	1	0	Unmodified	1264.6128	0.61282471	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							19.26	19.26	2	4.6217E-05	15747	DP690-10	171.73	121.13			0.82135	1.0141	NaN	1	0	Median	124840000	66655000	58190000	4664	591	4371	9231	22501;22502;22503;22504;22505	22503		5	9606
FYFVGDEDLLEIIGNSK	1	0	Unmodified	1957.9673	0.96730947	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									3								24.335	24.335	2	4.4148E-05	19772	DP690-9	152.4	118.86			0.81771	0.96046	NaN	1	0	Median	9391100	4673800	4717300	4665	1264	4372	9232;9233;9234	22506;22507;22508;22509;22510;22511	22507		6	9606
FYGELALK	1	0	Unmodified	939.50657	0.50656873	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							16.682	16.682	2	0.065303	10657	DP690-9	90.777	30.483			NaN	NaN	NaN	0	0	Median	151610000	151610000	0	4666	1046	4373	9235;9236	22512;22513	22513		2	9606
FYGELALKK	2	0	Unmodified	1067.6015	0.60153174	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								14.05	14.05	2	0.012823	7241	DP690-9	96.19	57.415			0.87171	0.99166	NaN	1	0	Median	88562000	50493000	38069000	4667	1046	4374	9237	22514;22515;22516	22515		3	9606
FYGPEGPYGVFAGR	0	1	Unmodified	1515.7147	0.71466402	76	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	yes	yes	0	0	0	15	0															4		18.936	18.936	2	0.005173	13840	DP690-15	90.149	66.773			0.64763	0.74685	NaN	1	0	Median	10590000	4543900	6046200	4668	76	4375	9238;9239;9240;9241	22517;22518;22519;22520	22517		4	9606
FYNELTEILVR	0	1	Unmodified	1395.7398	0.73981614	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			1														21.172	21.172	2	0.00021135	16505	DP690-3	168.8	136.93			0.84744	0.95447	NaN	1	0	Median	31704000	16747000	14957000	4669	1739	4376	9242	22521;22522;22523;22524	22523		4	9606
FYQASTSELYGK	1	0	Unmodified	1392.6561	0.65614609	210	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	6	0						1											15.109	15.109	2	0.00033069	8238	DP690-6	117.52	86.95			0.88323	1.0089	NaN	1	0	Median	15514000	7579700	7934500	4670	210	4377	9243	22525;22526;22527;22528	22526		4	9606
FYQGFLFSEKPEK	2	0	Unmodified	1618.8031	0.80314468	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.33	0.471									2	1							17.221	17.221	2;3	0.00018209	11367	DP690-9	132.86	103.65			0.7306	0.83852	7.6767	2	0	Median	411280000	338720000	72564000	4671	1046	4378	9244;9245;9246	22529;22530;22531;22532;22533;22534;22535;22536;22537	22532		9	9606
FYQPYSEDTQQQIIR	0	1	Unmodified	1914.9112	0.91119158	1775	Q92572	AP3S1	AP-3 complex subunit sigma-1	yes	yes	0	0	0	16	0																1	16.668	16.668	2	1.6527E-05	10691	DP690-16	189.57	155.83			0.77604	0.9041	NaN	1	0	Median	9158800	5140800	4018100	4672	1775	4379	9247	22538;22539;22540;22541;22542	22538		5	9606
FYQVPVPLPDR	0	1	Unmodified	1329.7081	0.70812208	2445	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	15	0															1		18.487	18.487	2	0.0092374	13274	DP690-15	79.974	49.287			0.6474	0.74777	NaN	1	0	Median	10752000	6106400	4645400	4673	2445	4380	9248	22543;22544	22544		2	9606
FYQVPVPLPDRR	0	2	Unmodified	1485.8092	0.80923311	2445	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	1	15	0															1		16.515	16.515	3	0.00039188	10808	DP690-15	121.6	104.49			0.92672	1.0053	NaN	1	0	Median	34950000	19811000	15139000	4674	2445	4381	9249	22545;22546;22547;22548	22546		4	9606
FYSLLDPSYAK	1	0	Unmodified	1302.6496	0.64960415	767	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	10.3	1.25									1	1		1					19.011	19.011	2	0.00087276	13615	DP690-9	107.79	89.163			0.66014	0.81625	22.595	2	0	Median	45962000	26525000	19438000	4675	767	4382	9250;9251;9252	22549;22550;22551;22552;22553	22552		5	9606
FYSQAIELNPSNAIYYGNR	0	1	Unmodified	2219.0647	0.064732107	870	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	4	0				1													19.296	19.296	2	2.782E-13	13846	DP690-4	185.87	159.89			0.86182	0.99536	NaN	1	0	Median	2969700	1590800	1378900	4676	870	4383	9253	22554;22555;22556	22554		3	9606
FYSVNVDYSK	1	0	Unmodified	1220.5714	0.57135383	91	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	yes	yes	0	0	0	12	4								1								1	15.774	15.774	2	0.00016441	9520	DP690-16	155.58	115.53			0.91366	0.99726	NaN	1	0	Median	117110000	63599000	53514000	4677	91	4384	9254;9255	22557;22558;22559;22560;22561;22562	22559		6	9606
FYTEDSPGLK	1	0	Unmodified	1155.5448	0.54480473	922	P60468	SEC61B	Protein transport protein Sec61 subunit beta	yes	yes	0	0	0	12	4								1								1	14.087	14.087	2	8.921E-05	7384	DP690-16	156.51	101.4			0.75831	0.75614	NaN	1	0	Median	980960000	567930000	413030000	4678	922	4385	9256;9257	22563;22564;22565;22566;22567;22568;22569	22566		7	9606
FYVHNDIFR	0	1	Unmodified	1209.5931	0.59309232	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	12.6	1.2												4			1		15.81	15.81	2;3	0.0019056	10064	DP690-12	97.431	68.473			1.1005	1.2459	4.2086	2	0	Median	289640000	187580000	102060000	4679	1196	4386	9258;9259;9260;9261;9262	22570;22571;22572;22573;22574;22575	22570		6	9606
FYVPPTQEDGVDPVEAFAQNVLSK	1	0	Unmodified	2649.2962	0.29624819	1139	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	11	0											1						23.685	23.685	2	0.017557	21375	DP690-11	81.01	50.702			NaN	NaN	NaN	0	0	Median	4184500	4184500	0	4680	1139	4387	9263	22576	22576		1	9606
GAAAAAAASGAAGGGGGGAGAGAPGGGR	0	1	Unmodified	1951.9209	0.92086184	1462	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	11	0											1						11.219	11.219	2	4.7067E-45	3913	DP690-11	215.37	178.52			0.68233	0.84365	NaN	1	0	Median	9933400	4892800	5040600	4681	1462	4388	9264	22577;22578;22579;22580	22578		4	9606
GAAGALMVYDITR	0	1	Oxidation (M)	1352.6758	0.67583567	939	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	1	0	15	0															1		17.092	17.092	2	0.00047824	11499	DP690-15	114.89	85.35			0.80575	0.88259	NaN	1	0	Median	125480000	68417000	57067000	4682	939	4389	9265	22581;22582;22583;22584	22584	1456	4	9606
GAALDVHESEPFSFAQGPLK	1	0	Unmodified	2099.0324	0.032369346	908	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	13	0													2				18.295	18.295	2;3	7.6723E-15	13227	DP690-13	237.59	206.07			0.73498	0.8301	8.0433	2	0	Median	288770000	159480000	129290000	4683	908	4390	9266;9267	22585;22586;22587;22588;22589;22590	22590		6	9606
GAANDSTQFTVAGR	0	1	Unmodified	1393.6586	0.65860571	323	O95425	SVIL	Supervillin	yes	yes	0	0	0	10	0										1							13.46	13.46	2	0.016387	7320	DP690-10	71.085	55.941			0.77599	0.97199	NaN	1	0	Median	42413000	25105000	17309000	4684	323	4391	9268	22591;22592	22592		2	9606
GAAVDEYFR	0	1	Unmodified	1026.4771	0.47705951	1585	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	4	0				1													15.541	15.541	2	0.0022219	9234	DP690-4	135.84	103.91			NaN	NaN	NaN	0	0	Median	17420000	17420000	0	4685	1585	4392	9269	22593	22593		1	9606
GADFLVTEVENGGSLGSK	1	0	Unmodified	1778.8687	0.86865806	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	5.6	3.2				4								1					19.651	19.651	2	4.932E-51	14230	DP690-4	282.62	208.09			1.0829	1.222	16.019	2	0	Median	103100000	41490000	61605000	4686	488	4393	9270;9271;9272;9273;9274	22594;22595;22596;22597;22598;22599;22600;22601;22602;22603;22604	22604		11	9606
GADNDGSGSESGYTTPK	1	0	Unmodified	1641.6754	0.67543756	1544	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	13	0													1				10.836	10.836	2	1.151E-07	3193	DP690-13	166.64	122.85			NaN	NaN	NaN	0	0	Median	5359800	0	5359800	4687	1544	4394	9275	22605	22605		1	9606
GADSLEDFLYHEGYACTSIHGDR	0	1	Unmodified	2612.1238	0.1237799	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	11	0											1						19.134	19.134	4	0.0008333	15400	DP690-11	71.428	56.187			0.82352	0.99138	NaN	1	0	Median	77250000	43131000	34120000	4688	96	4395	9276	22606;22607	22607		2	9606
GADTAPTLAPEALPSQGEVER	0	1	Unmodified	2108.0386	0.038576936	1635	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	10	0										1							16.634	16.634	2	0.00095927	12077	DP690-10	90.229	70.387			0.64743	0.81003	NaN	1	0	Median	36265000	19915000	16350000	4689	1635	4396	9277	22608	22608		1	9606
GAEAANVTGPDGVPVEGSR	0	1	Unmodified	1781.8544	0.85440498	507	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	9	4.1				2								2	1				14.13	14.13	2	2.3911E-31	7510	DP690-13	256.13	192.44			0.86244	1.0297	1.0801	2	0	Median	132290000	69747000	62544000	4690	507	4397	9278;9279;9280;9281;9282	22609;22610;22611;22612;22613;22614;22615;22616;22617;22618;22619;22620;22621	22617		13	9606
GAEAANVTGPGGVPVQGSK	1	0	Unmodified	1694.8588	0.85876208	1025	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	10.6	4.12					2	1							1	4			13.074	13.074	2	1.0824E-94	6014	DP690-13	261.61	228.75			0.93212	0.97315	1.7846	4	0	Median	478190000	257910000	220280000	4691	1025	4398	9283;9284;9285;9286;9287;9288;9289;9290	22622;22623;22624;22625;22626;22627;22628;22629;22630;22631;22632;22633;22634;22635;22636;22637	22622		15	9606
GAEADQIIEYLK	1	0	Unmodified	1348.6874	0.68744622	1168	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	14	0														1			19.682	19.682	2	0.00032231	15203	DP690-14	166.66	112.05			0.73836	0.89868	NaN	1	0	Median	40487000	22954000	17533000	4692	1168	4399	9291	22638;22639	22639		2	9606
GAEDDLNTVAAGTMTGMLYK	1	0	2 Oxidation (M)	2088.9344	0.93437114	118	O14925;Q5SRD1	TIMM23;TIMM23B	Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B	yes	no	0	2	0	15	0															1		17.23	17.23	2	0.0086481	11737	DP690-15	70.26	51.06			0.77374	0.90919	NaN	1	0	Median	8316400	3883000	4433400	4693	118	4400	9292	22640;22641	22640	126;127	2	9606
GAEEMETVIPVDVMR	0	1	2 Oxidation (M)	1706.7855	0.78552206	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	2	0	7.5	0.5							1	1									16.291	16.291	2	2.9864E-05	9785	DP690-7	140.63	114.51			0.71408	0.77837	1.9836	2	0	Median	272430000	151410000	121010000	4694	1939	4401	9293;9294	22642;22643;22644;22645;22646;22647	22644	2474;2475	6	9606
GAEEMETVIPVDVMR	0	1	Oxidation (M)	1690.7906	0.79060744	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	1	0	7	0							2										19.077	19.077	2	1.9215E-05	12281	DP690-7	128.08	95.752			0.98938	1.0991	36.474	2	0	Median	147140000	85172000	61963000	4695	1939	4401	9295;9296	22648;22649;22650;22651;22652;22653;22654	22648	2474;2475	7	9606
GAEGILAPQPPPPQQHQERPGAAAIGSAR	0	2	Unmodified	2900.5005	0.50053593	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	1	11	0											1						13.614	13.614	4	0.0029156	7317	DP690-11	52.97	34.902			0.45763	0.56413	NaN	1	0	Median	95151000	62862000	32289000	4696	1755	4402	9297	22655;22656	22655		2	9606
GAEILEVLHSLPAVR	0	1	Unmodified	1602.9093	0.90934108	1309	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	6	0						1											20.61	20.61	3	0.00015687	14729	DP690-6	107.99	107.99			1.4469	1.6136	NaN	1	0	Median	2457000	1202800	1254300	4697	1309	4403	9298	22657;22658;22659;22660	22657		4	9606
GAEPETGSAVSAAQCQVGPTR	0	1	Unmodified	2071.9593	0.95928076	2350	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	12	0												1					13.705	13.705	2	3.273E-42	7146	DP690-12	263.15	249.95			1.0071	1.2064	NaN	1	0	Median	24359000	13369000	10990000	4698	2350	4404	9299	22661;22662;22663;22664	22664		4	9606
GAESPFEEK	1	0	Unmodified	992.44509	0.44509068	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	10	0										1							12.54	12.54	2	0.0021941	5941	DP690-10	112.84	50.019			0.94662	1.1703	NaN	1	0	Median	73237000	38796000	34441000	4699	763	4405	9300	22665;22666;22667;22668	22668		4	9606
GAFHRPVLGGFR	0	2	Unmodified	1312.7153	0.71527314	2376	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	1	13	0													1				13.326	13.326	3	0.0008708	6399	DP690-13	93.096	66.384			0.39817	0.45719	NaN	1	0	Median	171490000	101200000	70291000	4700	2376	4406	9301	22669;22670	22670		2	9606
GAFSPFGNIIDLSMDPPR	0	1	Oxidation (M)	1948.9353	0.93529784	528	P18615	NELFE	Negative elongation factor E	yes	yes	0	1	0	13	0													1				22.366	22.366	2	0.0024981	18281	DP690-13	86.944	58.617			0.53348	0.63837	NaN	1	0	Median	6910100	4269300	2640800	4701	528	4407	9302	22671;22672;22673	22671	677	3	9606
GAGFGPQHNR	0	1	Unmodified	1039.4948	0.49477526	1410	Q56VL3	OCIAD2	OCIA domain-containing protein 2	yes	yes	0	0	0	16	0																1	9.8116	9.8116	2	0.0099361	2302	DP690-16	83.753	64.275			0.75175	0.84749	NaN	1	0	Median	552830	307400	245430	4702	1410	4408	9303	22674	22674		1	9606
GAGGQGQLDVR	0	1	Unmodified	1056.5312	0.53122035	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	5	3.56		1	1							1							10.981	10.981	2	2.7155E-05	3113	DP690-2	187.22	145.99			1.0575	0.98063	11.16	3	0	Plateau	887730000	492100000	395640000	4703	1270	4409	9304;9305;9306	22675;22676;22677;22678;22679;22680;22681;22682;22683	22679		9	9606
GAGIGGLGITVEGPSESK	1	0	Unmodified	1627.8417	0.84171503	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							17.777	17.777	2	5.2434E-13	13458	DP690-10	184.96	140.33			0.72891	0.83939	NaN	1	0	Median	378000000	247060000	130940000	4704	250	4410	9307	22684;22685;22686	22685		3	9606
GAGNCPECGTPLR	0	1	Unmodified	1387.5973	0.59726778	847	P51948	MNAT1	CDK-activating kinase assembly factor MAT1	yes	yes	0	0	0	14	0														1			11.565	11.565	2	0.0022851	4106	DP690-14	132.32	86.347			NaN	NaN	NaN	0	0	Median	7278900	7278900	0	4705	847	4411	9308	22687;22688	22687		2	9606
GAGSYTIMVLFADQATPTSPIR	0	1	Oxidation (M)	2311.1518	0.15183255	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	7	3.56		1							1	1							21.012	21.012	2	1.3523E-36	17998	DP690-10	235.38	235.38			0.6933	0.80994	NaN	1	0	Median	284960000	165000000	119960000	4706	549	4412	9309;9310;9311	22689;22690;22691;22692	22689	706	4	9606
GAGSYTIMVLFADQATPTSPIR	0	1	Unmodified	2295.1569	0.15691793	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	0.816									1	1	1						22.703	22.703	2	3.5349E-54	20237	DP690-10	302.2	302.2			0.77033	0.96481	2.423	3	0	Median	85530000	47051000	38479000	4707	549	4412	9312;9313;9314	22693;22694;22695;22696;22697;22698;22699;22700;22701	22695		9	9606
GAGTGGLGLAIEGPSEAK	1	0	Unmodified	1583.8155	0.81550028	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	8.25	3.77		1							1	1		1					16.716	16.716	2	1.0297E-16	11999	DP690-10	201.48	169.32			0.75927	0.90873	15.465	4	0	Median	535070000	294970000	240100000	4708	1270	4413	9315;9316;9317;9318	22702;22703;22704;22705;22706;22707;22708;22709;22710;22711;22712;22713;22714;22715	22703		14	9606
GAGTGGLGLAVEGPSEAK	1	0	Unmodified	1569.7999	0.79985021	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.6	3.58		1							2	2	1	1	1	1		1	15.67	15.67	2	3.4036E-10	10389	DP690-10	199.96	199.96			0.73622	0.83725	8.4687	8	0	Median	4359100000	2593000000	1766099999.9999998	4709	549	4414	9319;9320;9321;9322;9323;9324;9325;9326;9327;9328	22716;22717;22718;22719;22720;22721;22722;22723;22724;22725;22726;22727;22728;22729;22730;22731;22732;22733;22734;22735;22736;22737;22738;22739;22740;22741;22742;22743;22744;22745;22746;22747;22748;22749;22750	22718		35	9606
GAGTGGLGLTVEGPCEAK	1	0	Unmodified	1672.809	0.80903469	1270;250	O75369;Q14315	FLNB;FLNC	Filamin-B;Filamin-C	no	no	0	0	0	7	3.56		1							1	1							15.988	15.988	2	1.8175E-09	8908	DP690-2	175.21	142.6			0.78057	0.98733	8.7904	3	0	Median	745910000	414120000	331790000	4710	250;1270	4415	9329;9330;9331	22751;22752;22753;22754;22755;22756;22757;22758;22759;22760;22761	22756		11	9606
GAGYTFGQDISETFNHANGLTLVSR	0	1	Unmodified	2654.2725	0.27249305	987	P67775;P62714	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	yes	no	0	0	0	10	4						1								1			20.439	20.439	3	1.1776E-16	14469	DP690-6	177.32	153.45			1.1146	1.2947	67.704	2	0	Median	66604000	32402000	34202000	4711	987	4416	9332;9333	22762;22763;22764;22765;22766;22767;22768;22769	22763		8	9606
GAHLTALEMLTAFASHIR	0	1	Oxidation (M)	1954.0095	0.0094658344	1844	Q96EL3	MRPL53	39S ribosomal protein L53, mitochondrial	yes	yes	0	1	0	16	0																2	20.464	20.464	3;4	3.4834E-05	15224	DP690-16	118.2	104.77			0.77996	0.90712	1.8395	2	0	Median	28088000	15567000	12521000	4712	1844	4417	9334;9335	22770;22771;22772;22773;22774;22775	22772	2414	6	9606
GAHSVGLMWWMLAR	0	1	2 Oxidation (M)	1645.7857	0.78573725	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	2	0	14	0														3			19.516	19.516	3	0.00021244	13262	DP690-14	104.94	80.746			1.1551	1.4376	35.92	3	0	Median	138730000	74584000	64142000	4713	428	4418	9336;9337;9338	22776;22777;22778;22779;22780;22781;22782	22777	495;496	7	9606
GAHSVGLMWWMLAR	0	1	Oxidation (M)	1629.7908	0.79082263	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	1	0	14	0														2			20.139	20.139	3	0.00021945	14732	DP690-14	107.39	81.473			1.046	1.2372	15.227	2	0	Median	249120000	124750000	124360000	4714	428	4418	9339;9340	22783;22784;22785;22786;22787;22788;22789	22783	495;496	7	9606
GAHSVGLMWWMLAR	0	1	Unmodified	1613.7959	0.79590801	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	0	14	0														1			20.852	20.852	3	1.0159E-06	16638	DP690-14	142.97	109.66			0.96765	1.1177	NaN	1	0	Median	205000000	105000000	99999000	4715	428	4418	9341	22790;22791;22792;22793;22794	22792		5	9606
GAIFCPPCYDVR	0	1	Unmodified	1453.6482	0.64824072	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	13	0													2				17.508	17.508	2	0.013807	12129	DP690-13	104.42	60.654			NaN	NaN	NaN	0	0	Median	0	0	0	4716	2194	4419	9342;9343	22795;22796	22795		2	9606
GAIQFVTHYQHSSTQR	0	1	Unmodified	1858.9074	0.9074436	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	8.33	3.77			2								4						13.098	13.098	3;4	1.4149E-07	6571	DP690-11	157.23	143.81			0.98538	1.1154	7.6045	3	0	Median	184060000	82846000	101210000	4717	1333	4420	9344;9345;9346;9347;9348;9349	22797;22798;22799;22800;22801;22802;22803;22804;22805;22806;22807	22797		11	9606
GAIQFVTQYQHSSGQR	0	1	Unmodified	1805.8809	0.8808945	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	7.8	3.92			2								3						14.99	14.99	2;3	2.7338E-12	8601	DP690-3	204.32	158.44			0.91346	1.0367	7.5574	4	0	Median	425360000	219810000	205550000	4718	1332	4421	9350;9351;9352;9353;9354	22808;22809;22810;22811;22812;22813;22814;22815;22816;22817;22818;22819;22820;22821;22822	22818		15	9606
GAIQLGITHTVGSLSTKPER	1	1	Unmodified	2064.1328	0.13275209	1957	Q99755	PIP5K1A	Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha	yes	yes	0	0	1	12	0												1					15.349	15.349	3	2.0664E-05	9520	DP690-12	122.13	90.039			0.73775	0.92092	NaN	1	0	Median	45169000	23616000	21553000	4719	1957	4422	9355	22823;22824;22825;22826	22826		4	9606
GAKPQGHIGVDASAPQIGGSITGPSVEVQAPDIDVQGPGSK	2	0	Unmodified	3920.9868	0.98682272	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9.5	0.5									1	1							17.554	17.554	4	5.7264E-12	11781	DP690-9	90.023	90.023			0.56021	0.65969	NaN	1	0	Median	94056000	58709000	35347000	4720	1145	4423	9356;9357	22827;22828;22829;22830;22831;22832	22828		5	9606
GALADYEGKDVATR	1	1	Unmodified	1464.7209	0.72087161	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	1	11	0											2						12.999	12.999	2;3	2.496E-05	6441	DP690-11	166.62	129.3			0.82548	0.93354	23.498	2	0	Median	407380000	231040000	176340000	4721	144	4424	9358;9359	22833;22834;22835;22836;22837;22838	22833		6	9606
GALALAQAVQR	0	1	Unmodified	1096.6353	0.63529149	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7.67	3.4			1						1		1						15.507	15.507	2	0.00010505	9384	DP690-3	138.83	109.68			0.91914	0.95308	7.3632	3	0	Plateau	939890000	493030000	446860000	4722	470	4425	9360;9361;9362	22839;22840;22841;22842;22843;22844;22845;22846;22847;22848;22849	22846		11	9606
GALALEEKR	1	1	Unmodified	985.55564	0.55564418	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		1															10.729	10.729	2	0.00050428	2863	DP690-2	163.67	78.926			1.2247	1.2056	NaN	1	0	Median	24315000	11021000	13294000	4723	668	4426	9363	22850;22851;22852;22853	22852		4	9606
GALINVPPPFLGLPR	0	1	Unmodified	1559.9188	0.91878356	597	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	10.5	0.5										1	1						21.775	21.775	2	0.00050217	19137	DP690-11	107.21	107.21			0.69709	0.86167	27.645	2	0	Median	32814000	20701000	12112000	4724	597	4427	9364;9365	22854;22855;22856;22857;22858	22857		5	9606
GALQGSAWQVSSEDVR	0	1	Unmodified	1688.8118	0.81181188	2490	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	11	0											2						16.367	16.367	2	0.008599	11359	DP690-11	124.38	38.032			NaN	NaN	NaN	0	0	Median	0	0	0	4725	2490	4428	9366;9367	22859;22860	22859		2	9606
GALQNIIPASTGAAK	1	0	Unmodified	1410.7831	0.78307794	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	12.8	3.96						1								1	1	1	16.566	16.566	2	1.2886E-05	9879	DP690-6	129.84	72.288			0.72821	0.85435	50.766	4	0	Median	364370000	187250000	177120000	4726	371	4429	9368;9369;9370;9371	22861;22862;22863;22864;22865;22866;22867;22868;22869;22870;22871;22872;22873	22873		13	9606
GALSPGGFDDSTLPLVDK	1	0	Unmodified	1787.8941	0.89414453	69	O00192	ARVCF	Armadillo repeat protein deleted in velo-cardio-facial syndrome	yes	yes	0	0	0	11	0											1						19.63	19.63	2	0.0038589	16124	DP690-11	106.55	56.066			NaN	NaN	NaN	0	0	Median	25935000	25935000	0	4727	69	4430	9372	22874	22874		1	9606
GALTGGYYDTR	0	1	Unmodified	1172.5462	0.54620171	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							13.964	13.964	2	0.021378	7961	DP690-10	97.965	60.901			NaN	NaN	NaN	0	0	Median	81472000	81472000	0	4728	2424	4431	9373	22875;22876	22875		2	9606
GALTVGITNTVGSSISR	0	1	Unmodified	1631.8842	0.88424855	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	3.5	0.5			1	1													17.528	17.528	2	0.020961	11834	DP690-4	92.781	29.087			NaN	NaN	NaN	0	0	Median	6644600	6644600	0	4729	1122	4432	9374;9375	22877;22878	22878		2	9606
GALVTVGQLSCYDQAK	1	0	Unmodified	1708.8454	0.8454202	2326	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	15	0															1		17.542	17.542	2	2.4028E-17	12050	DP690-15	218.62	188.93			0.83792	0.9426	NaN	1	0	Median	96733000	57453000	39280000	4730	2326	4433	9376	22879;22880;22881;22882	22879		4	9606
GALWILGEYCSTK	1	0	Unmodified	1496.7334	0.73335055	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	11	0											1						20.771	20.771	2	0.027491	17680	DP690-11	91.658	47.233			NaN	NaN	NaN	0	0	Median	12294000	0	12294000	4731	877	4434	9377	22883	22883		1	9606
GANDFMCDEMER	0	1	2 Oxidation (M)	1505.5221	0.5221135	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	2	0	8	4				1								1					12.053	12.053	2	0.00011893	4841	DP690-12	125.68	125.68			1.2025	1.4091	31.009	2	0	Median	42934000	19706000	23228000	4732	520	4435	9378;9379	22884;22885;22886;22887;22888;22889;22890;22891;22892	22884	665;666	9	9606
GANDFMCDEMER	0	1	Oxidation (M)	1489.5272	0.52719888	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	1	0	8	4				1								1					13.904	13.904	2	0.00056768	7086	DP690-4	117.14	100.5			1.0438	1.2339	65.869	2	0	Median	25404000	13696000	11708000	4733	520	4435	9380;9381	22893;22894;22895	22895	665;666	3	9606
GANVIAGVWLEEAGQK	1	0	Unmodified	1640.8522	0.85222014	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							19.949	19.949	2	5.1658E-07	14791	DP690-9	158.01	101.38			0.78278	0.98067	15.536	2	0	Median	67906000	36922000	30984000	4734	1319	4436	9382;9383	22896;22897;22898;22899;22900;22901;22902	22900		7	9606
GAPANVSSSDLTGR	0	1	Unmodified	1330.6477	0.64770667	798	P49674	CSNK1E	Casein kinase I isoform epsilon	yes	yes	0	0	0	13	0													1				13.082	13.082	2	7.9965E-05	6046	DP690-13	150.09	118.86			0.54677	0.66195	NaN	1	0	Median	62601000	44044000	18558000	4735	798	4437	9384	22903;22904	22903		2	9606
GAPDPVQDEVQGVTLLPTTK	1	0	Unmodified	2064.0739	0.07389981	1855	Q96FS4	SIPA1	Signal-induced proliferation-associated protein 1	yes	yes	0	0	0	11	0											1						19.138	19.138	2	0.0030175	15368	DP690-11	127.05	84.953			NaN	NaN	NaN	0	0	Median	0	0	0	4736	1855	4438	9385	22905	22905		1	9606
GAPEGPGPSGGAQGGSIHSGR	0	1	Unmodified	1831.8561	0.85613631	2055	Q9BYN0	SRXN1	Sulfiredoxin-1	yes	yes	0	0	0	8	0								1									10.313	10.313	3	0.00023263	2864	DP690-8	94.911	94.911			0.72243	0.87714	NaN	1	0	Median	2352000	1542600	809380	4737	2055	4439	9386	22906;22907;22908;22909	22906		4	9606
GAPGQPGTILR	0	1	Unmodified	1065.5931	0.59309232	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	11	0											1						13.161	13.161	2	0.07654	6662	DP690-11	79.986	45.733			NaN	NaN	NaN	0	0	Median	0	0	0	4738	837	4440	9387	22910	22910		1	9606
GAPLVVICQGK	1	0	Unmodified	1140.6325	0.6325143	1260	Q14195	DPYSL3	Dihydropyrimidinase-related protein 3	yes	yes	0	0	0	4	0				1													15.039	15.039	2	0.000324	8634	DP690-4	119.17	74.42			0.71943	0.78724	NaN	1	0	Median	17013000	9354600	7658000	4739	1260	4441	9388	22911	22911		1	9606
GAPPLQVQWFR	0	1	Unmodified	1297.6931	0.69314072	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	11	0											1						19.423	19.423	2	0.00017911	15674	DP690-11	157.33	137			0.6871	0.76877	NaN	1	0	Median	274370000	164850000	109520000	4740	1758	4442	9389	22912;22913	22912		2	9606
GAPPSSNIEDFHGLLPK	1	0	Unmodified	1777.8999	0.89989861	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											3						17.527	17.527	3	0.00041736	12796	DP690-11	90.725	71.937			0.65526	0.7303	NaN	1	0	Median	290450000	183390000	107060000	4741	735	4443	9390;9391;9392	22914;22915;22916;22917;22918;22919	22914		6	9606
GAPVGGHILSYLLEK	1	0	Unmodified	1552.8613	0.86132826	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						19.113	19.113	2	0.0059393	15402	DP690-11	110.64	77.408			NaN	NaN	NaN	0	0	Median	18826000	18826000	0	4742	65	4444	9393	22920	22920		1	9606
GAPVNISSSDLTGR	0	1	Unmodified	1372.6947	0.69465686	783	P48730	CSNK1D	Casein kinase I isoform delta	yes	yes	0	0	0	13	0													1				15.349	15.349	2	8.4389E-05	9205	DP690-13	160.72	119.64			0.68228	0.79329	NaN	1	0	Median	164770000	94869000	69897000	4743	783	4445	9394	22921	22921		1	9606
GAQAAIATLHNHPLR	0	1	Unmodified	1568.8536	0.85355754	1631	Q8IYX4	DND1	Dead end protein homolog 1	yes	yes	0	0	0	13	0													1				21.425	21.425	2	0.0022759	17229	DP690-13	88.596	51.04			0.69371	0.85112	NaN	1	0	Median	29690000	17525000	12165000	4744	1631	4446	9395	22922;22923;22924	22924		3	9606
GAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTR	0	2	Unmodified	3268.5821	0.5820933	350	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	0	1	12	0												1					13.533	13.533	4	3.6026E-08	6916	DP690-12	96.505	81.372			0.44747	0.50736	NaN	1	0	Median	81750000	52753000	28997000	4745	350	4447	9396	22925;22926;22927;22928	22927		4	9606
GAQGVILVYDVTR	0	1	Unmodified	1389.7616	0.76161421	2175	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	11	4							1								1		18.507	18.507	2	0.00010221	13330	DP690-15	123.62	98.765			0.89043	1.0204	4.7972	2	0	Median	45802000	19960000	25841000	4746	2175	4448	9397;9398	22929;22930;22931;22932;22933;22934	22931		6	9606
GAQYQPILR	0	1	Unmodified	1044.5716	0.5716286	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							13.987	13.987	2	0.0011442	8011	DP690-10	124.34	85.551			0.90196	1.09	NaN	1	0	Median	183150000	94554000	88592000	4747	591	4449	9399	22935;22936;22937;22938	22938		4	9606
GASGPQVGNALGSLEPLR	0	1	Unmodified	1721.906	0.90604662	2146	Q9H9F9	ACTR5	Actin-related protein 5	yes	yes	0	0	0	8	4				1								1					18.453	18.453	2	4.4952E-11	12853	DP690-4	167.89	123.93			0.68651	0.80974	11.669	2	0	Median	36394000	19880000	16514000	4748	2146	4450	9400;9401	22939;22940;22941;22942;22943;22944;22945	22943		7	9606
GASQAGMLAPGTR	0	1	Unmodified	1215.603	0.60300508	1330	Q15417	CNN3	Calponin-3	yes	yes	0	0	0	11.3	3.77						1								2			12.483	12.483	2	9.1963E-05	4959	DP690-6	136.49	111.97			0.75127	0.83147	12.885	3	0	Plateau	851320000	471480000	379850000	4749	1330	4451	9402;9403;9404	22946;22947;22948;22949;22950;22951;22952;22953;22954	22952		9	9606
GASQAGMLAPGTR	0	1	Oxidation (M)	1231.5979	0.5979197	1330	Q15417	CNN3	Calponin-3	yes	yes	0	1	0	6	0						2											10.694	10.694	2	0.0013481	3113	DP690-6	105.2	82.423			0.5597	0.64002	NaN	1	0	Median	5640700	4082200	1558500	4750	1330	4451	9405;9406	22955;22956;22957;22958	22955	2072	4	9606
GASQAGMTGYGMPR	0	1	Oxidation (M)	1398.602	0.6020188	690	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	1	0	10.6	3.61							1	2							2		12.244	12.244	2	0.00029936	5157	DP690-8	118.4	104.71			0.84321	0.97472	12.652	5	0	Median	43171000	24054000	19118000	4751	690	4452	9407;9408;9409;9410;9411	22959;22960;22961;22962;22963;22964;22965;22966	22966	993;994	8	9606
GATGEPEVMEPALEGTGK	1	0	Unmodified	1771.8298	0.82982971	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	11	0											1						16.043	16.043	2	2.73E-13	10976	DP690-11	190.34	177.54			0.66861	0.80876	NaN	1	0	Median	60688000	32150000	28538000	4752	2127	4453	9412	22967;22968	22967		2	9606
GATGEPEVMEPALEGTGK	1	0	Oxidation (M)	1787.8247	0.82474434	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	1	0	11	0											1						14.583	14.583	2	0.076158	8774	DP690-11	80.371	40.79			NaN	NaN	NaN	0	0	Median	0	0	0	4753	2127	4453	9413	22969	22969		1	9606
GATQQILDEAER	0	1	Unmodified	1329.6525	0.6524577	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	8	4				1								1					15.448	15.448	2	3.6694E-05	9073	DP690-4	176.6	146.34			1.6282	1.8507	40.487	2	0	Median	130420000	48276000	82144000	4754	1044	4454	9414;9415	22970;22971;22972;22973;22974;22975	22974		6	9606
GATYGKPVHHGVNQLK	2	0	Unmodified	1704.906	0.90598704	949	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	1	1	0	1																10.291	10.291	3	0.00020261	2139	DP690-1	105.95	74.371			1.0985	1.0985	NaN	1	0	Median	5753700	2734500	3019200	4755	949	4455	9416	22976;22977	22976		2	9606
GAVAIADAIR	0	1	Unmodified	955.54508	0.5450795	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					15.327	15.327	2	0.0020732	9475	DP690-12	101.72	51.697			0.86735	0.97934	NaN	1	0	Median	196990000	108350000	88633000	4756	750	4456	9417	22978;22979	22979		2	9606
GAVAMAETLK	1	0	Oxidation (M)	1005.5165	0.51648149	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	1	0	12	0												1					11.886	11.886	2	0.06415	4744	DP690-12	68.016	28.763			0.91894	1.0959	NaN	1	0	Median	58739000	33047000	25692000	4757	750	4457	9418	22980	22980		1	9606
GAVASVTFDDFHK	1	0	Unmodified	1392.6674	0.66737948	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														15.516	15.516	3	0.0021344	9424	DP690-3	67.118	56.997			0.82494	0.88799	NaN	1	0	Median	18248000	9118800	9129100	4758	1293	4458	9419	22981;22982	22982		2	9606
GAVDALAAALAHISGASSFEPR	0	1	Unmodified	2110.0807	0.080716522	1971	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	11	0											1						23.62	23.62	3	0.00023294	21259	DP690-11	99.407	84.286			0.82546	1.02	NaN	1	0	Median	10292000	5998900	4293500	4759	1971	4459	9420	22983;22984;22985;22986	22983		4	9606
GAVDDDVAEADIISTVEFNHSGELLATGDK	1	0	Unmodified	3087.452	0.45203314	1015	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	0	0	5	0					1												21.626	21.626	3	0.034849	16361	DP690-5	50.767	50.767			1.8772	1.8722	NaN	1	0	Median	50406000	17278000	33128000	4760	1015	4460	9421	22987	22987		0	9606
GAVDGGLSIPHSTK	1	0	Unmodified	1337.6939	0.69392858	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	10	4						2								2			13.266	13.266	2;3	3.3926E-05	6487	DP690-14	156.01	120.1			0.88596	1.0357	6.1723	3	0	Median	306150000	154940000	151210000	4761	757	4461	9422;9423;9424;9425	22988;22989;22990;22991;22992;22993;22994;22995;22996;22997;22998	22995		11	9606
GAVDGGLSIPHSTKR	1	1	Unmodified	1493.795	0.79503961	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	14	0														1			11.892	11.892	3	0.0079284	4584	DP690-14	72.681	43.973			0.76555	0.96428	NaN	1	0	Median	33973000	23052000	10921000	4762	757	4462	9426	22999;23000	23000		2	9606
GAVEAELDPVEYTLR	0	1	Unmodified	1660.8308	0.83081599	275	O75817	POP7	Ribonuclease P protein subunit p20	yes	yes	0	0	0	16	0																1	19.33	19.33	2	1.5532E-05	13974	DP690-16	134.13	103.74			1.0105	1.1835	NaN	1	0	Median	5397100	2386500	3010600	4763	275	4463	9427	23001;23002	23002		2	9606
GAVEALAAALAHISGATSVDQR	0	1	Unmodified	2107.1022	0.10218025	2195	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	10.3	0.943									1		2						23.003	23.003	2;3	2.9479E-08	20531	DP690-11	141.64	109.82			0.9247	1.1487	NaN	1	0	Median	31463000	27824000	3638800	4764	2195	4464	9428;9429;9430	23003;23004;23005;23006;23007	23004		5	9606
GAVEKGEELSCEER	1	1	Unmodified	1591.7148	0.71479996	641	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	1	10.2	3.92							3								2		11.548	11.548	2;3	1.3093E-08	4112	DP690-7	203.03	167.53			1.113	1.1731	15.655	3	0	Median	91276000	42254000	49023000	4765	641	4465	9431;9432;9433;9434;9435	23008;23009;23010;23011;23012;23013;23014;23015;23016;23017;23018;23019;23020;23021;23022	23018		15	9606
GAVIATELK	1	0	Unmodified	900.52803	0.52803245	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	8	4				1								1					13.599	13.599	2	0.0027117	6934	DP690-12	109.01	64.32			0.98842	1.0397	NaN	1	0	Median	504240000	245360000	258870000	4766	154	4466	9436;9437	23023;23024;23025;23026;23027	23023		5	9606
GAVIVVSHDAR	0	1	Unmodified	1122.6146	0.61455605	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	7	4			1								1						10.715	10.715	2	0.00011476	3163	DP690-11	134.05	90.244			0.8658	1.0006	3.6871	2	0	Median	169730000	89157000	80577000	4767	1687	4467	9438;9439	23028;23029;23030;23031	23028		4	9606
GAVSAEQVIAGFNR	0	1	Unmodified	1417.7314	0.73137672	2347	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	12	4								1								1	18.448	18.448	2	6.3341E-05	12825	DP690-16	159.34	159.34			0.81696	0.95955	16.68	2	0	Median	15607000	8487000	7119900	4768	2347	4468	9440;9441	23032;23033;23034;23035;23036;23037;23038;23039	23033		8	9606
GAVTGHEECVDALLQHGAK	1	0	Unmodified	1990.9531	0.95307317	135	O15084	ANKRD28	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	yes	yes	0	0	0	3	0			1														14.402	14.402	3	0.00022754	7879	DP690-3	119.47	93.061			NaN	NaN	NaN	0	0	Median	5300300	0	5300300	4769	135	4469	9442	23040;23041	23040		2	9606
GAWSNVLR	0	1	Unmodified	901.477	0.47699993	381;473	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	8.5	1.5							1			1							15.871	15.871	2	0.054896	9294	DP690-7	108.98	61.937			NaN	NaN	NaN	0	0	Median	104920000	0	104920000	4770	381;473	4470	9443;9444	23042;23043	23043		2	9606
GAYGGGYGGYDDYGGYNDGYGFGSDR	0	1	Unmodified	2659.016	0.016003593	901	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	0	13	0													2				18.419	18.419	2	3.3113E-13	13403	DP690-13	158.17	147.69			NaN	NaN	NaN	0	0	Median	9322700	0	9322700	4771	901	4471	9445;9446	23044;23045	23044		2	9606
GAYGGGYGGYDDYNGYNDGYGFGSDR	0	1	Unmodified	2716.0375	0.037467316	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	13	0													1				18.253	18.253	2	1.0932E-45	13123	DP690-13	237.05	234.28			0.71206	0.86631	NaN	1	0	Median	46910000	28100000	18809000	4772	639	4472	9447	23046;23047;23048;23049;23050;23051;23052	23047		7	9606
GCAFVTFTTR	0	1	Unmodified	1158.5492	0.5491786	1795	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	13	0													1				16.611	16.611	2	0.0098319	10988	DP690-13	108.74	64.296			NaN	NaN	NaN	0	0	Median	10527000	0	10527000	4773	1795	4473	9448	23053	23053		1	9606
GCCFVTFYTR	0	1	Unmodified	1309.5584	0.55836308	1795	Q92879;O95319	CELF1;CELF2	CUGBP Elav-like family member 1;CUGBP Elav-like family member 2	yes	no	0	0	0	12	0												1					17.672	17.672	2	0.00078709	12724	DP690-12	110.41	92.422			0.88591	1.0479	NaN	1	0	Median	78305000	42351000	35955000	4774	1795	4474	9449	23054;23055;23056	23055		3	9606
GCFSDLDLIDNLGPAMMLSDR	0	1	2 Oxidation (M)	2371.0494	0.049417673	2025	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	2	0	12	0												1					22.044	22.044	2	9.4424E-05	18388	DP690-12	121.92	121.92			0.81173	0.99462	NaN	1	0	Median	4132400	2469900	1662500	4775	2025	4475	9450	23057;23058;23059	23057	2557;2558	3	9606
GCGTVLLSGPR	0	1	Unmodified	1115.5757	0.5757277	1129	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	15	0															1		14.244	14.244	2	0.00011612	7676	DP690-15	146.23	117.08			0.87562	0.94726	NaN	1	0	Median	173430000	95725000	77702000	4776	1129	4476	9451	23060;23061;23062;23063	23061		4	9606
GCHDHLTLSVSRPEGR	0	2	Unmodified	1819.8748	0.87476327	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	1	10	4						1								1			11.182	11.182	4	0.0033781	3862	DP690-14	145.83	136.92			0.75939	0.89241	NaN	1	0	Median	345050000	191910000	153140000	4777	820	4477	9452;9453	23064;23065;23066;23067;23068	23067		5	9606
GCHLLVATPGR	0	1	Unmodified	1179.6183	0.61826122	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	9	3.56				2							2	2					12.492	12.492	2;3	3.6261E-05	5383	DP690-12	120.45	93.405			0.85075	1.0093	15.695	5	0	Median	145420000	90605000	54814000	4778	96	4478	9454;9455;9456;9457;9458;9459	23069;23070;23071;23072;23073;23074;23075;23076;23077;23078;23079;23080;23081;23082;23083;23084;23085;23086	23073		18	9606
GCLDEETSR	0	1	Unmodified	1065.4397	0.43968773	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0										1							10.806	10.806	2	0.00035087	3380	DP690-10	157.58	136.88			0.85747	1.0374	NaN	1	0	Median	180590000	96204000	84389000	4779	1319	4479	9460	23087;23088;23089	23087		3	9606
GCPVNTEPSGPTCEK	1	0	Unmodified	1631.692	0.69195602	879	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	14	0														3			10.935	10.935	2	4.5708E-07	3332	DP690-14	164.9	102.27			NaN	NaN	NaN	0	0	Median	28969000	16078000	12890000	4780	879	4480	9461;9462;9463	23090;23091;23092;23093	23090		4	9606
GCPVNTEPSGPTCEKK	2	0	Unmodified	1759.7869	0.78691904	879	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	1	14	0														1			10.277	10.277	3	6.1246E-08	2501	DP690-14	171.26	141.62			0.84502	0.94652	NaN	1	0	Median	60075000	31907000	28168000	4781	879	4481	9464	23094;23095	23094		2	9606
GCTAQPGPAFPHR	0	1	Unmodified	1394.6514	0.65135226	1584	Q86X51	CXorf67	Uncharacterized protein CXorf67	yes	yes	0	0	0	12	0												3					11.627	11.627	2;3	0.0062331	4425	DP690-12	112.11	64.88			0.65114	0.7646	NaN	1	0	Median	90481000	53279000	37202000	4782	1584	4482	9465;9466;9467	23096;23097;23098	23098		3	9606
GCTATLGNFAK	1	0	Unmodified	1138.5441	0.54409322	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	11.3	4.03						1	2							1	3		14.132	14.132	2	1.7668E-05	7622	DP690-14	190.73	168.6			0.80339	0.86965	NaN	1	0	Median	869830000	503700000	366130000	4783	502	4483	9468;9469;9470;9471;9472;9473;9474	23099;23100;23101;23102;23103;23104;23105;23106	23099		8	9606
GCTGSLNMTLQR	0	1	Oxidation (M)	1352.6177	0.61766887	1869	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	1	0	12	0												1					12.649	12.649	2	0.061914	5654	DP690-12	81.865	42.56			NaN	NaN	NaN	0	0	Median	9496900	0	9496900	4784	1869	4484	9475	23107	23107		1	9606
GCWDSIHVVEVQEK	1	0	Unmodified	1684.7879	0.78790532	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	11.7	3.3							1							2			16.223	16.223	2;3	2.559E-05	10600	DP690-14	143.76	122.97			0.89697	0.98673	4.4911	2	0	Median	455660000	232040000	223620000	4785	769	4485	9476;9477;9478	23108;23109;23110;23111;23112;23113;23114	23110		7	9606
GDAASSPAPAASVGSSQGGAR	0	1	Unmodified	1799.8398	0.83981755	1744	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	11	0											2						11.219	11.219	2	8.258E-11	3951	DP690-11	160.8	89.72			NaN	NaN	NaN	0	0	Median	5603900	5603900	0	4786	1744	4486	9479;9480	23115;23116;23117	23116		3	9606
GDADQASNILASFGLSAR	0	1	Unmodified	1791.8751	0.87514042	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	10	1									1		1						22.59	22.59	2	1.8188000000000002E-42	19969	DP690-11	304.03	260.62			0.82028	0.98744	NaN	1	0	Median	108090000	58125000	49961000	4787	735	4487	9481;9482	23118;23119;23120;23121;23122	23119		5	9606
GDAHECFVSPVAK	1	0	Unmodified	1415.6503	0.65034921	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											2						12.678	12.678	2;3	0.00010953	5967	DP690-11	119.27	91.793			0.80386	0.94052	3.5408	2	0	Median	254530000	140610000	113930000	4788	1504	4488	9483;9484	23123;23124;23125;23126;23127;23128	23125		6	9606
GDANSEVTVYYQSGTR	0	1	Unmodified	1745.7857	0.78565671	194	O43847	NRD1	Nardilysin	yes	yes	0	0	0	3	0			1														14.777	14.777	2	0.00011278	8359	DP690-3	150.14	106.85			NaN	NaN	NaN	0	0	Median	5046300	0	5046300	4789	194	4489	9485	23129;23130	23129		2	9606
GDATVSYEDPPTAK	1	0	Unmodified	1449.6624	0.66235368	1090	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	0	11	0											2						13.072	13.072	2	0.0038303	6548	DP690-11	127.83	90.323			NaN	NaN	NaN	0	0	Median	0	0	0	4790	1090	4490	9486;9487	23131;23132	23132		2	9606
GDDTPLHLAASHGHR	0	1	Unmodified	1582.7601	0.76005109	1206	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	13	0													1				10.621	10.621	4	0.018738	2970	DP690-13	76.358	39.404			NaN	NaN	NaN	0	0	Median	4331600	4331600	0	4791	1206	4491	9488	23133	23133		1	9606
GDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAHASR	1	1	Unmodified	3891.8493	0.84926661	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	1	9	0									1								18.582	18.582	4	0.020577	13229	DP690-9	37.544	26.161			0.33703	0.39089	NaN	1	0	Median	12869000	7743000	5126000	4792	808	4492	9489	23134	23134		1	9606
GDECELLGHSK	1	0	Unmodified	1243.5503	0.55030081	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	13	0													1				11.844	11.844	2	0.050816	4533	DP690-13	61.765	45.047			0.65376	0.75068	NaN	1	0	Median	12618000	7406400	5211200	4793	793	4493	9490	23135	23135		1	9606
GDECQLVGPAQPSHWK	1	0	Unmodified	1807.8312	0.83116712	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0										1							14.263	14.263	3	0.026641	8399	DP690-10	52.522	39.354			0.74832	0.92489	NaN	1	0	Median	74962000	42243000	32719000	4794	1319	4494	9491	23136	23136		1	9606
GDEELDSLIK	1	0	Unmodified	1117.5503	0.55028404	441	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	15.5	0.5															1	1	17.575	17.575	2	0.00050608	11727	DP690-16	118.5	61.214			1.0193	1.0835	NaN	1	0	Median	221950000	106950000	115010000	4795	441	4495	9492;9493	23137;23138;23139;23140;23141	23141		5	9606
GDETFAVLSR	0	1	Unmodified	1093.5404	0.54038805	2135	Q9H857	NT5DC2	5'-nucleotidase domain-containing protein 2	yes	yes	0	0	0	4	0				1													16.563	16.563	2	0.0010443	10577	DP690-4	120.12	69.993			0.91816	1.0693	NaN	1	0	Median	10765000	5289400	5475300	4796	2135	4496	9494	23142;23143	23142		2	9606
GDFCIQVGR	0	1	Unmodified	1050.4917	0.49166372	501;562	P15531;P22392;O60361	NME1;NME2;NME2P1	Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	no	no	0	0	0	12	4								1								1	15.718	15.718	2	0.023583	8824	DP690-8	75.854	46.705			0.84829	0.93652	5.82	2	0	Median	88231000	49418000	38813000	4797	501;562	4497	9495;9496	23144;23145;23146;23147;23148	23148		5	9606
GDFDENLNYPEQK	1	0	Unmodified	1567.6791	0.67906638	2318	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	15.5	0.5															1	1	15.683	15.683	2	8.3601E-05	9376	DP690-16	173.24	156.07			0.67214	0.78596	NaN	1	0	Median	30697000	21803000	8894200	4798	2318	4498	9497;9498	23149;23150;23151;23152;23153;23154	23151		6	9606
GDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNK	1	1	Unmodified	3817.9111	0.91109578	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	11	0											1						18.339	18.339	5	0.00038426	14221	DP690-11	55.964	55.964			0.73998	0.85802	NaN	1	0	Median	112580000	69961000	42614000	4799	849	4499	9499	23155;23156	23155		2	9606
GDFYTAHGEDALLAAR	0	1	Unmodified	1705.806	0.80599822	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	11	0											1						16.506	16.506	3	2.5144E-05	11585	DP690-11	151.22	100.13			NaN	NaN	NaN	0	0	Median	156930000	156930000	0	4800	736	4500	9500	23157;23158;23159	23157		3	9606
GDGPICLVLAPTR	0	1	Unmodified	1367.7231	0.72312022	517;1793	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	11	3.38				1					1		1	2		1	1		19.023	19.023	2	9.5809E-05	15147	DP690-11	145.23	119.16			0.72398	0.80228	12.21	6	0	Median	2070899999.9999998	1196600000	874310000	4801	1793;517	4501	9501;9502;9503;9504;9505;9506;9507	23160;23161;23162;23163;23164;23165;23166;23167;23168;23169;23170;23171;23172;23173;23174;23175;23176;23177;23178;23179;23180;23181	23161		22	9606
GDGPVQGIINFEQK	1	0	Unmodified	1500.7573	0.75725712	355	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	0	0	0	8	0								1									18.348	18.348	2	3.0803E-05	11815	DP690-8	131.37	90.78			0.80537	0.93551	NaN	1	0	Median	4663500	2651000	2012500	4802	355	4502	9508	23182;23183;23184;23185	23183		4	9606
GDINILLIGDPSVAK	1	0	Unmodified	1523.8559	0.85590853	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	7.8	3.66			1	1					1		1	1					20.817	20.817	2	1.4005E-05	16107	DP690-3	131.35	131.35			0.7597	0.83464	5.6168	4	0	Linear	428110000	249390000	178710000	4803	581	4503	9509;9510;9511;9512;9513	23186;23187;23188;23189;23190;23191;23192;23193;23194;23195;23196;23197;23198;23199;23200;23201;23202;23203;23204	23199		19	9606
GDINVCIVGDPSTAK	1	0	Unmodified	1544.7505	0.75045718	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	11	0											1						16.356	16.356	2	0.00067539	11416	DP690-11	103.97	77.004			0.6683	0.80748	NaN	1	0	Median	55956000	34781000	21175000	4804	1280	4504	9514	23205	23205		1	9606
GDIRPAIETHEMLYQVIK	1	1	Oxidation (M)	2128.0987	0.098674772	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	1	1	3	0			1														15.793	15.793	3	0.048588	9753	DP690-3	74.147	47.211			NaN	NaN	NaN	0	0	Median	18966000	0	18966000	4805	2061	4505	9515	23206	23206		1	9606
GDISISGPK	1	0	Unmodified	872.46035	0.46034682	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								12.469	12.469	2	0.073575	5146	DP690-9	60.118	31.696			0.67436	0.82986	NaN	1	0	Median	27467000	16373000	11094000	4806	1145	4506	9516	23207	23207		1	9606
GDKPVTYEEAHAPHYIAHR	1	1	Unmodified	2190.0606	0.060649782	1843	Q96EL2	MRPS24	28S ribosomal protein S24, mitochondrial	yes	yes	0	0	1	16	0																2	10.827	10.827	4;5	0.0044607	3432	DP690-16	61.495	38.662			0.78448	0.8838	17.558	2	0	Median	48624000	27766000	20858000	4807	1843	4507	9517;9518	23208;23209;23210	23210		3	9606
GDLENAFLNLVQCIQNKPLYFADR	1	1	Unmodified	2837.417	0.4170488	404	P07355	ANXA2	Annexin A2	yes	yes	0	0	1	11.5	2.5									1					1			25.298	25.298	3	3.6132E-05	21966	DP690-14	123.61	105.96			0.80774	0.99492	NaN	1	0	Median	11543000	8140900	3402400	4808	404	4508	9519;9520	23211;23212;23213;23214	23213		4	9606
GDLGIEIPAEK	1	0	Unmodified	1140.6027	0.60265396	488	P14618;P30613	PKM;PKLR	Pyruvate kinase PKM;Pyruvate kinase PKLR	yes	no	0	0	0	8	4				1								1					16.935	16.935	2	0.00015479	10964	DP690-4	145.9	76.092			0.89665	0.9731	2.66	2	0	Median	405190000	216040000	189150000	4809	488	4509	9521;9522	23215;23216;23217;23218;23219;23220;23221;23222	23219		8	9606
GDLIGVVEALTR	0	1	Unmodified	1241.698	0.69795133	1620	Q8IY17	PNPLA6	Neuropathy target esterase	yes	yes	0	0	0	10	0										1							23.273	23.273	2	0.0003651	21021	DP690-10	164.66	164.66			0.63431	0.78978	NaN	1	0	Median	21030000	12501000	8529600	4810	1620	4510	9523	23223;23224;23225;23226	23223		4	9606
GDLLFLTNR	0	1	Unmodified	1047.5713	0.57129425	1026	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	0	0	0	16	0																1	18.994	18.994	2	0.00067876	13450	DP690-16	141.52	87.361			0.63803	0.71726	NaN	1	0	Median	56195000	25157000	31038000	4811	1026	4511	9524	23227;23228;23229;23230;23231	23229		5	9606
GDLNDCFIPCTPK	1	0	Unmodified	1535.6748	0.6748494	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7	4			1								1						17.214	17.214	2	5.1919E-05	12567	DP690-11	172.61	127.45			0.78527	0.83937	1.4517	2	0	Median	425830000	243730000	182100000	4812	470	4512	9525;9526	23232;23233;23234;23235;23236;23237;23238;23239	23232		8	9606
GDLNLELHCDLTPK	1	0	Unmodified	1623.7927	0.79265635	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	12	0												1					16.404	16.404	2	3.2176E-06	10993	DP690-12	184.98	152.37			0.7263	0.87026	NaN	1	0	Median	30858000	17260000	13598000	4813	1200	4513	9527	23240;23241;23242;23243	23242		4	9606
GDLPFVVPR	0	1	Unmodified	998.55492	0.5549159	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1															18.246	18.246	2	0.070838	11521	DP690-2	60.972	22.18			1.4245	1.4868	NaN	1	0	Median	5178800	2171400	3007500	4814	668	4514	9528	23244	23244		1	9606
GDLSRPEDADTSGPCCEHTQEK	1	1	Unmodified	2488.0231	0.023079581	2057	Q9BZE9	ASPSCR1	Tether containing UBX domain for GLUT4	yes	yes	0	0	1	4	0				1													10.653	10.653	4	0.00059481	3081	DP690-4	75.224	73.998			0.81648	0.93121	NaN	1	0	Median	11113000	6865700	4247700	4815	2057	4515	9529	23245	23245		1	9606
GDMAQVTLSYR	0	1	Unmodified	1239.5918	0.59177169	2558				yes	yes	0	0	0	15	0															1		18.603	18.603	2	0.0063036	13769	DP690-15	85.67	46.366	+		0.89859	0.96553	NaN	1	0	Median	206920000	106890000	100030000	4816	2558	4516	9530	23246;23247	23247		2	9606
GDMAQVTLSYRR	0	2	Unmodified	1395.6929	0.69288272	2558				yes	yes	0	0	1	15	0															1		16.814	16.814	3	0.025498	11154	DP690-15	40.516	20.132	+		0.7555	0.81956	NaN	1	0	Median	23694000	12710000	10984000	4817	2558	4517	9531	23248;23249	23248		2	9606
GDPEAALIQYLTNEEAR	0	1	Unmodified	1888.9167	0.91667089	2307	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	0	11	0											2						22.903	22.903	2	0.00011541	20397	DP690-11	162.31	124.98			NaN	NaN	NaN	0	0	Median	0	0	0	4818	2307	4518	9532;9533	23250;23251	23251		2	9606
GDPERPEAAGLDQDER	0	2	Acetyl (Protein N-term)	1795.7973	0.79728403	1535	Q7LG56	RRM2B	Ribonucleoside-diphosphate reductase subunit M2 B	yes	yes	1	0	1	11.3	3.77						1								2			13.815	13.815	2	1.4857E-07	6667	DP690-6	151.3	118.21			0.61191	0.65813	NaN	1	0	Median	53742000	32905000	20837000	4819	1535	4519	9534;9535;9536	23252;23253;23254;23255;23256;23257	23256		6	9606
GDPERPEAAGLDQDER	0	2	Unmodified	1753.7867	0.78671935	1535	Q7LG56	RRM2B	Ribonucleoside-diphosphate reductase subunit M2 B	yes	yes	0	0	1	6	0						1											11.936	11.936	3	0.0075538	4467	DP690-6	65.652	52.927			0.61709	0.6637	NaN	1	0	Median	11433000	6637600	4795400	4820	1535	4519	9537	23258;23259	23259		2	9606
GDPIVQHRPMLEER	0	2	Oxidation (M)	1691.8413	0.84133787	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	1	1	3	0			1														11.652	11.652	3	0.058095	4168	DP690-3	45.891	34.572			0.61201	0.63311	NaN	1	0	Median	10333000	5793400	4539400	4821	708	4520	9538	23260	23260		1	9606
GDPLGGCQVSPEGYAHLTHLLMGLASGR	0	1	Oxidation (M)	2908.396	0.39599578	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	1	0	3	0			2														21.028	21.028	3;4	4.0344E-05	16390	DP690-3	81.682	71.309			0.63824	0.70831	5.8392	2	0	Median	91896000	52277000	39619000	4822	2316	4521	9539;9540	23261;23262;23263;23264;23265;23266;23267;23268;23269	23266	2759	9	9606
GDPPQLSNSEER	0	1	Unmodified	1327.6004	0.60042213	748	P45985	MAP2K4	Dual specificity mitogen-activated protein kinase kinase 4	yes	yes	0	0	0	6	0						1											11.214	11.214	2	0.0017409	3666	DP690-6	97.597	68.124			0.62533	0.70269	NaN	1	0	Median	3051200	1838800	1212500	4823	748	4522	9541	23270;23271;23272;23273	23272		4	9606
GDPQVYEELFSYSCPK	1	0	Unmodified	1917.8455	0.84547978	2429	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	12	0												1					20.416	20.416	2	0.00014696	16434	DP690-12	119.88	83.881			0.88069	1.0592	NaN	1	0	Median	18254000	9618400	8635700	4824	2429	4523	9542	23274;23275;23276;23277	23274		4	9606
GDPSKQDILTIFK	2	0	Acetyl (Protein N-term)	1502.7981	0.7980593	2174	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	1	0	1	8	4				1								1					20.953	20.953	2	1.8542E-05	16967	DP690-12	168.83	137.19			0.72103	0.79114	9.2513	2	0	Median	17432000	9921800	7509900	4825	2174	4524	9543;9544	23278;23279;23280;23281	23278		4	9606
GDPVNYILQVLVGR	0	1	Unmodified	1541.8566	0.85657723	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	9.75	0.829									2	1	1						26.291	26.291	2	2.4939E-05	24353	DP690-10	128.03	128.03			0.73817	0.86309	13.712	3	0	Median	19999000	11755000	8244400	4826	1399	4525	9545;9546;9547;9548	23282;23283;23284;23285;23286;23287;23288;23289;23290;23291	23282		10	9606
GDQCCYSHSPPTPR	0	1	Unmodified	1660.6722	0.67222363	2254	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	4	0				1													10.478	10.478	3	0.053917	2860	DP690-4	45.722	27.053			0.85644	0.9957	NaN	1	0	Median	7371100	3951300	3419800	4827	2254	4526	9549	23292	23292		1	9606
GDQENVHPDVMLVQPR	0	1	Oxidation (M)	1848.8788	0.87884559	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	1	0	3	0			1														14.03	14.03	3	0.0013203	7348	DP690-3	81.327	66.405			0.70362	0.7908	NaN	1	0	Median	33014000	20851000	12164000	4828	1300	4527	9550	23293	23293	1989	1	9606
GDQLLSVNGVSVEGEHHEK	1	0	Unmodified	2032.9814	0.98139641	2221	Q9NUP9;O14910	LIN7C;LIN7A	Protein lin-7 homolog C;Protein lin-7 homolog A	yes	no	0	0	0	15	0															1		14.081	14.081	3	1.131E-06	7524	DP690-15	131.25	116.09			0.88911	1.036	NaN	1	0	Median	40877000	23184000	17693000	4829	2221	4528	9551	23294;23295;23296;23297	23295		4	9606
GDQPAASGDSDDDEPPPLPR	0	1	Unmodified	2034.8767	0.87665657	76	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	yes	yes	0	0	0	15	0															1		14.487	14.487	2	2.3344E-97	7959	DP690-15	302.85	284.75			NaN	NaN	NaN	0	0	Median	7879700	7879700	0	4830	76	4529	9552	23298;23299;23300	23298		3	9606
GDQTVLILHAK	1	0	Unmodified	1193.6768	0.67682195	1125	Q06330	RBPJ	Recombining binding protein suppressor of hairless	yes	yes	0	0	0	12	0												1					13.672	13.672	2	0.00045741	7115	DP690-12	114.89	100.22			0.84445	0.97805	NaN	1	0	Median	112250000	58110000	54137000	4831	1125	4530	9553	23301;23302;23303;23304	23304		4	9606
GDREQLLQR	0	2	Acetyl (Protein N-term)	1155.5996	0.59963426	1113	Q04917	YWHAH	14-3-3 protein eta	yes	yes	1	0	1	15	0															1		13.296	13.296	2	0.00026072	6461	DP690-15	150.36	59.096			NaN	NaN	NaN	0	0	Median	36438000	36438000	0	4832	1113	4531	9554	23305;23306	23306		2	9606
GDRSEDFGVNEDLADSDAR	0	2	Unmodified	2066.8777	0.8777192	365	P04083	ANXA1	Annexin A1	yes	yes	0	0	1	6	0						1											15.277	15.277	3	3.3432E-05	8441	DP690-6	120.56	114.04			0.88778	0.95483	NaN	1	0	Median	23208000	13103000	10105000	4833	365	4532	9555	23307;23308;23309;23310	23309		4	9606
GDSGAAPDVDDKLCLR	1	1	Unmodified	1687.7835	0.78354822	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	1	10	0										1							14.645	14.645	3	8.9562E-05	9035	DP690-10	115.83	98.465			0.70339	0.84935	NaN	1	0	Median	142500000	75801000	66704000	4834	1167	4533	9556	23311;23312	23311		2	9606
GDSKKDDEENYLDLFSHK	3	0	Unmodified	2138.9756	0.97564233	1133	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	2	13	1.41												2			1		16.086	16.086	3;4	3.4054E-10	10442	DP690-12	159.64	159.64			0.80252	0.86886	7.8607	3	0	Plateau	1677099999.9999998	923550000	753580000	4835	1133	4534	9557;9558;9559	23313;23314;23315;23316;23317	23315		5	9606
GDSLSLKGETVNDCHAEIISR	1	1	Unmodified	2300.1067	0.10667328	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	11	0											3						14.409	14.409	3;4	1.4479E-23	8555	DP690-11	204.51	188.88			0.85749	0.87866	7.8101	2	0	Median	1341400000	747120000	594260000	4836	897	4535	9560;9561;9562	23318;23319;23320;23321;23322;23323	23320		6	9606
GDSVIVVLR	0	1	Unmodified	956.56548	0.56548059	980	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	16	0																1	16.548	16.548	2	0.025179	10613	DP690-16	75.213	45.837			0.85898	0.96188	NaN	1	0	Median	62578000	33379000	29199000	4837	980	4536	9563	23324	23324		1	9606
GDTVATLSER	0	1	Unmodified	1047.5197	0.51965261	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			3														12.853	12.853	2	0.0057522	5874	DP690-3	120.87	68.569			NaN	NaN	NaN	0	0	Median	49934000	0	49934000	4838	559	4537	9564;9565;9566	23325;23326;23327;23328	23325		4	9606
GDTVSASPCSAPLAR	0	1	Unmodified	1487.7038	0.70384134	1335	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	10	0										1							13.333	13.333	2	0.027763	7083	DP690-10	77.674	34.162			0.73709	0.92324	NaN	1	0	Median	44196000	23292000	20905000	4839	1335	4538	9567	23329	23329		1	9606
GDVAEGDLIEHFSQFGTVEK	1	0	Unmodified	2177.0277	0.027677899	1186	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	14	0														2			19.729	19.729	2;3	7.8734E-14	15242	DP690-14	180.56	138.53			0.8486	0.98475	NaN	1	0	Median	230030000	120650000	109380000	4840	1186	4539	9568;9569	23330;23331;23332;23333;23334;23335;23336	23335		7	9606
GDVDILMEFLLNVTTAPEFR	0	1	Unmodified	2279.1508	0.15076992	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13	0													1				30.023	30.023	2	3.5232E-23	25307	DP690-13	291.75	291.75			0.68741	0.82327	NaN	1	0	Median	7065600	4388200	2677300	4841	565	4540	9570	23337;23338;23339;23340;23341;23342;23343	23337		7	9606
GDVDILMEFLLNVTTAPEFR	0	1	Oxidation (M)	2295.1457	0.14568454	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	13.2	0.4													4	1			28.41	28.41	2	1.2335E-15	24002	DP690-13	202.4	138.3			NaN	NaN	NaN	0	0	Median	0	0	0	4842	565	4540	9571;9572;9573;9574;9575	23344;23345;23346;23347;23348	23344	740	5	9606
GDVDVSLPK	1	0	Unmodified	928.48656	0.48656157	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	9	0									1								14.479	14.479	2	0.059782	7787	DP690-9	64.42	64.42			0.63695	0.76092	NaN	1	0	Median	42439000	26674000	15765000	4843	1145	4541	9576	23349	23349		1	9606
GDVEEDETIPDSEQDIRPR	0	2	Unmodified	2198.9927	0.99274896	1799	Q92973	TNPO1	Transportin-1	yes	yes	0	0	1	8.33	3.77			1								2						14.762	14.762	3	6.8925E-05	8328	DP690-3	113.01	95.19			0.85942	0.97051	19.961	2	0	Median	58376000	27877000	30499000	4844	1799	4542	9577;9578;9579	23350;23351;23352;23353;23354	23353		5	9606
GDVGSADIQDLEK	1	0	Unmodified	1345.6361	0.63613893	2502	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	15	0															1		15.608	15.608	2	0.00014037	9605	DP690-15	166.69	147.42			0.79863	0.88242	NaN	1	0	Median	150050000	87219000	62827000	4845	2502	4543	9580	23355;23356;23357;23358	23357		4	9606
GDYDLNAVR	0	1	Unmodified	1021.4829	0.48287317	1108	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	4	0				1													14.246	14.246	2	0.060281	7550	DP690-4	64.265	33.652			0.89958	1.0489	NaN	1	0	Median	14086000	6919400	7166900	4846	1108	4544	9581	23359	23359		1	9606
GDYPLEAVR	0	1	Unmodified	1018.5084	0.50835964	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	8	4				1								1					15.117	15.117	2	0.0012903	8581	DP690-4	122.74	84.609			0.93931	1.0265	11.281	2	0	Median	321760000	162140000	159620000	4847	488	4545	9582;9583	23360;23361;23362;23363;23364;23365	23363		6	9606
GEAGQNLLEMMACDR	0	1	2 Oxidation (M)	1725.712	0.71203954	808;16;446	P49792;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	2	0	9	0									1								14.761	14.761	2	0.003052	8134	DP690-9	111.31	85.195			NaN	NaN	NaN	0	0	Median	4276500	4276500	0	4848	808;16;446	4546	9584	23366;23367	23366	19;20	2	9606
GEAGVPAEFSIWTR	0	1	Unmodified	1518.7467	0.74669243	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10.5	0.5										1	1						20.052	20.052	2	8.4468E-05	16743	DP690-10	160.91	124.38			0.81383	0.95865	NaN	1	0	Median	273880000	161390000	112490000	4849	250	4547	9585;9586	23368;23369;23370	23368		3	9606
GEALYGYCNLK	1	0	Unmodified	1286.5965	0.59652272	1867	Q96H79	ZC3HAV1L	Zinc finger CCCH-type antiviral protein 1-like	yes	yes	0	0	0	6	0						1											15.525	15.525	2	9.6253E-05	8698	DP690-6	131.22	112.96			0.80885	0.91293	NaN	1	0	Median	22821000	12577000	10243000	4850	1867	4548	9587	23371;23372;23373;23374	23371		4	9606
GEATVSFDDPPSAK	1	0	Unmodified	1419.6518	0.65178899	672	P35637;Q92804	FUS;TAF15	RNA-binding protein FUS;TATA-binding protein-associated factor 2N	yes	no	0	0	0	12	0												1					14.313	14.313	2	0.00029642	8124	DP690-12	112.13	86.999			0.77313	0.92176	NaN	1	0	Median	38745000	21831000	16913000	4851	672	4549	9588	23375	23375		1	9606
GEAVLRPGLDAEPELSPEEQR	0	2	Unmodified	2291.1394	0.13935361	1982	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	1	15	0															1		16.058	16.058	3	5.3707E-05	10122	DP690-15	116.04	99.919			0.51014	0.5534	NaN	1	0	Median	25750000	18609000	7140600	4852	1982	4550	9589	23376;23377;23378	23376		3	9606
GECQACDQLHFCR	0	1	Unmodified	1679.6603	0.66027874	1867	Q96H79	ZC3HAV1L	Zinc finger CCCH-type antiviral protein 1-like	yes	yes	0	0	0	8.67	3.77						2								1			13.259	13.259	2;3	5.4942E-05	6033	DP690-6	178.53	173.55			0.93193	1.06	12.168	3	0	Median	109740000	57041000	52696000	4853	1867	4551	9590;9591;9592	23379;23380;23381;23382;23383;23384;23385;23386;23387	23387		9	9606
GEDEAELALSLLAQLGITPLPLSR	0	1	Unmodified	2505.369	0.3690192	1457	Q66K74	MAP1S	Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain	yes	yes	0	0	0	11	0											1						28.966	28.966	2	1.7832E-07	26378	DP690-11	148.97	124.88			NaN	NaN	NaN	0	0	Median	0	0	0	4854	1457	4552	9593	23388	23388		1	9606
GEDEEENNLEVR	0	1	Unmodified	1431.6114	0.61138074	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	8	4				1								1					12.996	12.996	2	3.4155E-10	6150	DP690-12	232.41	208.88			0.79621	0.9104	4.3811	2	0	Median	200650000	112390000	88265000	4855	375	4553	9594;9595	23389;23390;23391;23392;23393	23390		5	9606
GEDIGEDLFSEALGR	0	1	Unmodified	1606.7475	0.74748029	1646	Q8N2G8	GHDC	GH3 domain-containing protein	yes	yes	0	0	0	4	0				1													22.023	22.023	2	0.00010835	16963	DP690-4	122.33	103.19			0.69612	0.8035	NaN	1	0	Median	2419200	1349100	1070100	4856	1646	4554	9596	23394;23395;23396;23397	23397		4	9606
GEDKDEGPVAEQVKK	3	0	Unmodified	1627.8053	0.80532952	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	2	11	0											1						10.338	10.338	3	0.025309	2568	DP690-11	90.853	52.885			NaN	NaN	NaN	0	0	Median	0	0	0	4857	1755	4555	9597	23398	23398		1	9606
GEDNIDFMPTILSR	0	1	Unmodified	1606.7661	0.76610725	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	11	0											1						21.142	21.142	2	4.0349E-05	18129	DP690-11	171.32	139.07			0.64758	0.77657	NaN	1	0	Median	27603000	17527000	10076000	4858	652	4556	9598	23399;23400;23401;23402	23400		4	9606
GEDNIDFMPTILSR	0	1	Oxidation (M)	1622.761	0.76102187	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	0	3	0			1														18.731	18.731	2	0.002995	13594	DP690-3	92.112	73.922			0.77019	0.87777	NaN	1	0	Median	12614000	6361400	6252200	4859	652	4556	9599	23403;23404;23405	23403	914	3	9606
GEDSVPDTVHHVVVPVNPK	1	0	Unmodified	2024.0327	0.032703697	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	11	0											1						13.994	13.994	3	0.0052695	7903	DP690-11	60.541	60.541			0.63126	0.76265	NaN	1	0	Median	55500000	37638000	17862000	4860	1768	4557	9600	23406;23407	23406		2	9606
GEDVPLTEQTVSQVLQSAK	1	0	Unmodified	2028.0375	0.037514303	954	P61923	COPZ1	Coatomer subunit zeta-1	yes	yes	0	0	0	8	0								1									20.592	20.592	2	0.012699	14284	DP690-8	95.651	69.119			NaN	NaN	NaN	0	0	Median	508880	0	508880	4861	954	4558	9601	23408	23408		1	9606
GEEATFQISGLQTNTDYR	0	1	Unmodified	2028.9389	0.93886289	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	10	0										1							18.092	18.092	2	0.060189	14004	DP690-10	81.789	53.82			NaN	NaN	NaN	0	0	Median	18515000	18515000	0	4862	1399	4559	9602	23409	23409		1	9606
GEEILSGAQR	0	1	Unmodified	1058.5356	0.53563702	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	4	0				1													12.518	12.518	2	0.0023331	5159	DP690-4	100.02	0			0.88981	1.0009	NaN	1	0	Median	30571000	16404000	14167000	4863	495	4560	9603	23410	23410		1	9606
GEELFTGVVPILVELDGDVNGHK	1	0	Unmodified	2436.2537	0.25365509	57	CON__Q9U6Y5			yes	yes	0	0	0	6.68	2.55	2	2	1	3	19	16	18	15	2	1			4	1		1	27.97	27.97	2;3	1.9881E-37	18007	DP690-7	299.27	275.39		+	0.81899	0.92088	169.86	26	0	Median	5317900000	2316100000	3001799999.9999995	4864	57	4561	9604;9605;9606;9607;9608;9609;9610;9611;9612;9613;9614;9615;9616;9617;9618;9619;9620;9621;9622;9623;9624;9625;9626;9627;9628;9629;9630;9631;9632;9633;9634;9635;9636;9637;9638;9639;9640;9641;9642;9643;9644;9645;9646;9647;9648;9649;9650;9651;9652;9653;9654;9655;9656;9657;9658;9659;9660;9661;9662;9663;9664;9665;9666;9667;9668;9669;9670;9671;9672;9673;9674;9675;9676;9677;9678;9679;9680;9681;9682;9683;9684;9685;9686;9687;9688	23411;23412;23413;23414;23415;23416;23417;23418;23419;23420;23421;23422;23423;23424;23425;23426;23427;23428;23429;23430;23431;23432;23433;23434;23435;23436;23437;23438;23439;23440;23441;23442;23443;23444;23445;23446;23447;23448;23449;23450;23451;23452;23453;23454;23455;23456;23457;23458;23459;23460;23461;23462;23463;23464;23465;23466;23467;23468;23469;23470;23471;23472;23473;23474;23475;23476;23477;23478;23479;23480;23481;23482;23483;23484;23485;23486;23487;23488;23489;23490;23491;23492;23493;23494;23495;23496;23497;23498;23499;23500;23501;23502;23503;23504;23505;23506;23507;23508;23509;23510;23511;23512;23513;23514;23515;23516;23517;23518;23519;23520;23521;23522;23523;23524;23525;23526;23527;23528;23529;23530;23531;23532;23533;23534;23535;23536;23537;23538;23539;23540;23541;23542;23543;23544;23545;23546;23547;23548;23549;23550;23551;23552;23553;23554;23555;23556;23557;23558;23559;23560;23561;23562;23563;23564;23565;23566;23567;23568;23569;23570;23571;23572;23573;23574;23575;23576;23577;23578;23579;23580;23581;23582;23583;23584;23585;23586;23587;23588;23589;23590;23591;23592;23593;23594;23595;23596	23521		184	
GEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGK	2	0	Unmodified	3920.8956	0.89560768	57	CON__Q9U6Y5			yes	yes	0	0	1	5	0					1												23.356	23.356	4	6.1179E-11	18482	DP690-5	101.72	87.347		+	NaN	NaN	NaN	0	0	Median	27682000	0	27682000	4865	57	4562	9689	23597;23598;23599;23600	23597		4	
GEELGGAEGDTSSPDPAGR	0	1	Unmodified	1800.7762	0.77621424	1469	Q6F5E8	RLTPR	Leucine-rich repeat-containing protein 16C	yes	yes	0	0	0	4	0				3													13.162	13.162	2	0.00033911	6080	DP690-4	128.35	94.488			NaN	NaN	NaN	0	0	Median	1325500	1325500	0	4866	1469	4563	9690;9691;9692	23601;23602;23603;23604	23601		4	9606
GEELGGGQDPVQLLSGFPR	0	1	Unmodified	1954.9749	0.97485447	1109	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	0	0	0	6	0						1											21.202	21.202	2	1.959E-09	15435	DP690-6	145.7	119.79			0.59693	0.67922	NaN	1	0	Median	4732600	2749400	1983200	4867	1109	4564	9693	23605;23606	23606		2	9606
GEELLSPLNLEQAAYAR	0	1	Unmodified	1872.9581	0.95814177	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	7	2.83			1						2								20.785	20.785	2	0.010492	15819	DP690-9	117.27	59.136			NaN	NaN	NaN	0	0	Median	2350900	2350900	0	4868	65	4565	9694;9695;9696	23607;23608;23609	23609		3	9606
GEENLMDAQVK	1	0	Unmodified	1232.5707	0.5707019	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	4	0				1													14.206	14.206	2	0.024896	7532	DP690-4	70.908	51.555			1.6372	1.7845	NaN	1	0	Median	10799000	4606500	6192900	4869	826	4566	9697	23610	23610		1	9606
GEENLMDAQVK	1	0	Oxidation (M)	1248.5656	0.56561652	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	4	0				1													11.672	11.672	2	0.005325	4181	DP690-4	111.65	70.623			NaN	NaN	NaN	0	0	Median	13524000	0	13524000	4870	826	4566	9698	23611;23612	23612	1242	2	9606
GEFGGFGSVSGK	1	0	Unmodified	1127.5247	0.52473799	1142	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	13	0													1				15.652	15.652	2	0.025519	9786	DP690-13	69.346	34.077			0.82529	0.93466	NaN	1	0	Median	130960000	76181000	54777000	4871	1142	4567	9699	23613;23614	23614		2	9606
GEFTIETEGK	1	0	Unmodified	1109.5241	0.52406928	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3	0			1														14.363	14.363	2	5.5369E-05	7866	DP690-3	169.44	65.002			0.8277	0.85459	NaN	1	0	Median	91213000	47521000	43692000	4872	720	4568	9700	23615;23616;23617;23618;23619	23618		5	9606
GEFTYYEIQDNTGK	1	0	Unmodified	1663.7366	0.73658126	1367	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	11	0											1						16.851	16.851	2	7.9012E-05	12088	DP690-11	158.56	124.8			1.3908	1.7005	NaN	1	0	Median	23604000	9136500	14467000	4873	1367	4569	9701	23620;23621;23622	23620		3	9606
GEFVTTVQQR	0	1	Unmodified	1163.5935	0.59348625	710	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	6	0						1											13.197	13.197	2	0.031868	5910	DP690-6	92.051	47.702			NaN	NaN	NaN	0	0	Median	6066500	6066500	0	4874	710	4570	9702	23623	23623		1	9606
GEGAGPPPPLPPAQPGAEGGGDR	0	1	Unmodified	2079.9974	0.99738082	2235	Q9NVI7;Q5T9A4	ATAD3A;ATAD3B	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B	yes	no	0	0	0	12	0												1					13.983	13.983	2	8.2648E-30	7593	DP690-12	223.14	200.64			0.38772	0.46439	NaN	1	0	Median	24621000	16658000	7962800	4875	2235	4571	9703	23624;23625;23626;23627;23628	23627		5	9606
GEGAGQPSTSAQGQPAAPAPQKR	1	1	Unmodified	2190.0778	0.077756409	865	P52926	HMGA2	High mobility group protein HMGI-C	yes	yes	0	0	1	16	0																1	10.276	10.276	3	1.4952E-15	2699	DP690-16	167.9	141.91			0.65958	0.74667	NaN	1	0	Median	15510000	9235900	6274200	4876	865	4572	9704	23629;23630;23631;23632;23633;23634	23630		6	9606
GEGGILINSQGER	0	1	Unmodified	1328.6684	0.66844211	632	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	12	0												1					14.012	14.012	2	0.048786	7558	DP690-12	69.216	44.697			0.75774	0.89861	NaN	1	0	Median	46777000	28182000	18594000	4877	632	4573	9705	23635	23635		1	9606
GEGGTTNPHIFPEGSEPK	1	0	Unmodified	1852.8592	0.85915601	1856	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	6	0						1											13.399	13.399	3	0.00025587	6179	DP690-6	93.765	93.765			0.75635	0.85381	NaN	1	0	Median	22708000	12454000	10253000	4878	1856	4574	9706	23636;23637;23638	23637		3	9606
GEGPDVDVNLPK	1	0	Unmodified	1238.6143	0.61428128	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	9.5	0.5									1	1							15.513	15.513	2	0.00070933	9088	DP690-9	108.47	69.694			0.75835	0.90928	21.894	2	0	Median	173580000	102940000	70640000	4879	1145	4575	9707;9708	23639;23640;23641;23642;23643;23644;23645;23646	23645		8	9606
GEGPDVDVTLPK	1	0	Unmodified	1225.619	0.6190323	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								15.942	15.942	2	0.026461	9845	DP690-9	93.561	44.959			NaN	NaN	NaN	0	0	Median	5141200	5141200	0	4880	1145	4576	9709	23647	23647		1	9606
GEGPDVHMTLPK	1	0	Oxidation (M)	1295.618	0.61798644	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9.33	0.471									2	1							11.49	11.49	2;3	0.002542	3964	DP690-9	99.788	56.506			0.70618	0.89149	14.98	2	0	Median	27181000	16319000	10862000	4881	1145	4577	9710;9711;9712	23648;23649;23650;23651;23652;23653;23654	23653	1773	7	9606
GEGPEFDVNLSK	1	0	Unmodified	1290.6092	0.6091959	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								16.32	16.32	2	0.0010009	10266	DP690-9	105.4	71.436			0.72775	0.88988	NaN	1	0	Median	30151000	18560000	11591000	4882	1145	4578	9713	23655;23656	23655		2	9606
GEGPEVDVK	1	0	Unmodified	928.45018	0.45017606	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10	0										1							11.362	11.362	2	0.0038473	4193	DP690-10	104.44	68.252			0.67671	0.83505	NaN	1	0	Median	105890000	58339000	47550000	4883	1145	4579	9714	23657;23658;23659	23658		3	9606
GEGPEVDVNLPK	1	0	Unmodified	1252.6299	0.62993134	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	7.8	2.93		1							3	1							15.614	15.614	2	0.00094602	10400	DP690-10	105.98	63.579			0.57638	0.64917	6.5024	3	0	Plateau	331540000	196520000	135020000	4884	1145	4580	9715;9716;9717;9718;9719	23660;23661;23662;23663;23664;23665;23666;23667;23668	23660		9	9606
GEGTEQEPSTTPEADDDGRR	0	2	Unmodified	2145.9047	0.90466223	1153	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	1	9	0									1								10.493	10.493	3	0.0096345	2822	DP690-9	55.094	40.791			0.6781	0.73504	NaN	1	0	Median	6244400	3496200	2748200	4885	1153	4581	9720	23669	23669		1	9606
GEHVPGFCLPK	1	0	Unmodified	1239.607	0.60702783	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							14.986	14.986	3	0.0015352	9530	DP690-10	89.171	66.593			0.64025	0.7922	NaN	1	0	Median	67486000	34595000	32891000	4886	1782	4582	9721	23670;23671;23672;23673	23671		4	9606
GEIAQNLLSLVK	1	0	Unmodified	1283.7449	0.74490152	1250	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	yes	yes	0	0	0	10	0										1							20.979	20.979	2	0.0011447	18076	DP690-10	121.83	78.179			0.83295	1.0162	NaN	1	0	Median	23862000	11854000	12007000	4887	1250	4583	9722	23674;23675;23676;23677	23674		4	9606
GEILQIVNR	0	1	Unmodified	1040.5978	0.59784335	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	12	0												1					16.282	16.282	2	0.00085673	10782	DP690-12	128.57	80.005			0.93711	1.0983	NaN	1	0	Median	93959000	45990000	47969000	4888	2280	4584	9723	23678;23679;23680;23681	23679		4	9606
GELQSSDLFHHSK	1	0	Unmodified	1483.7056	0.7055559	1097	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	7	4			1								1						12.54	12.54	3	0.00033837	5797	DP690-11	103.14	83.639			1.0563	1.1859	12.048	2	0	Median	145230000	73945000	71287000	4889	1097	4585	9724;9725	23682;23683;23684;23685	23682		4	9606
GEMAATPAGFAQLTHLLMGLAGGK	1	0	2 Oxidation (M)	2373.1821	0.18208683	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	2	0	2.67	0.471		1	2														23.4	23.4	2;3	1.7231E-05	18991	DP690-3	125.04	112.61			0.73692	0.76203	17.568	3	0	Median	93414000	53696000	39718000	4890	2316	4586	9726;9727;9728	23686;23687;23688;23689;23690;23691;23692;23693;23694;23695	23691	2760;2761	10	9606
GEMQVVPVLVHLLSAISSVR	0	1	Oxidation (M)	2149.1929	0.19290951	726	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	1	0	11	0											1						25.367	25.367	3	0.004173	23291	DP690-11	64.26	64.26			0.74823	0.90518	NaN	1	0	Median	3990300	2260000	1730300	4891	726	4587	9729	23696;23697	23696	1072	2	9606
GEMTALREELKK	2	1	Oxidation (M)	1419.7392	0.73916421	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	2	9	0									1								10.62	10.62	3	0.0036865	2896	DP690-9	75.566	49.154			0.65481	0.70062	NaN	1	0	Median	24927000	14496000	10430000	4892	1264	4588	9730	23698;23699	23698	1912	2	9606
GENLVSMTVEGPPPKDTGIAR	1	1	Oxidation (M)	2183.0892	0.089232298	492	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	1	1	15	0															1		14.695	14.695	3	1.007E-10	8276	DP690-15	159.26	140.5			0.6139	0.69532	NaN	1	0	Median	52486000	31332000	21154000	4893	492	4589	9731	23700;23701;23702;23703	23702	622	4	9606
GENSWFSTQVDTVATK	1	0	Unmodified	1768.8268	0.82679325	414	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	11	0											1						18.286	18.286	2	0.0002865	14164	DP690-11	112.44	81.613			1.4357	1.7351	NaN	1	0	Median	87299000	40547000	46752000	4894	414	4590	9732	23704;23705;23706	23704		3	9606
GEPETFLPLDYLEVKPTDEK	2	0	Unmodified	2319.1522	0.15220971	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	1	10	0										1							20.881	20.881	3	0.00020659	17858	DP690-10	97.776	97.776			0.55357	0.67611	NaN	1	0	Median	106630000	73444000	33189000	4895	1285	4591	9733	23707;23708;23709;23710;23711	23707		5	9606
GEPGAAPLSAPAFSLVFPFLK	1	0	Unmodified	2115.1405	0.14046323	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	7.33	3.77		1								2							25.581	25.581	2	1.6293E-09	23733	DP690-10	146.84	127.79			0.68604	0.79533	7.1202	3	0	Plateau	52588000	30753000	21836000	4896	1782	4592	9734;9735;9736	23712;23713;23714;23715;23716;23717;23718;23719;23720	23716		9	9606
GEPGGILCFLPGWQEIK	1	0	Unmodified	1899.9553	0.955305	1527	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	11	0											1						23.661	23.661	2	0.016421	21379	DP690-11	65.219	65.219			0.82958	1.0095	NaN	1	0	Median	6213300	3778600	2434700	4897	1527	4593	9737	23721;23722	23722		2	9606
GEPPLPEEDLSK	1	0	Unmodified	1309.6402	0.64016167	155	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	14	0														1			14.911	14.911	2	0.0019414	8723	DP690-14	95.483	61.397			0.71325	0.86391	NaN	1	0	Median	71624000	41942000	29681000	4898	155	4594	9738	23723;23724;23725	23723		3	9606
GEQGYGFHLHGEK	1	0	Unmodified	1457.6688	0.66877646	1339	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	yes	yes	0	0	0	14	0														1			11.534	11.534	3	0.014963	4141	DP690-14	80.905	58.584			0.86903	1.0487	NaN	1	0	Median	91322000	48852000	42469000	4899	1339	4595	9739	23726;23727	23726		2	9606
GEQLFLEPELVIPHR	0	1	Unmodified	1775.957	0.95701956	2252	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	yes	yes	0	0	0	11	0											1						19.969	19.969	3	0.047267	16506	DP690-11	66.673	28.904			NaN	NaN	NaN	0	0	Median	16041000	0	16041000	4900	2252	4596	9740	23728;23729	23728		2	9606
GESAEDKEHEEGRDSEEGPR	1	2	Unmodified	2241.937	0.93702499	1549	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	2	11	0											1						10.244	10.244	4	0.011697	2431	DP690-11	62.438	57.108			0.24767	0.27741	NaN	1	0	Median	55638000	31244000	24394000	4901	1549	4597	9741	23730	23730		1	9606
GESLADSVQTMSCYADVVVLR	0	1	Oxidation (M)	2315.0773	0.077346983	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	0	2	0		1															19.649	19.649	2	8.4842E-15	13096	DP690-2	173.25	143.7			2.3636	2.4189	NaN	1	0	Median	1655100	702880	952240	4902	602	4598	9742	23731;23732;23733	23731	812	3	9606
GESPVDYDGGR	0	1	Unmodified	1150.4891	0.48908076	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	7.67	3.77					2								1				12.346	12.346	2	0.00019363	5046	DP690-13	155.58	89.155			0.77479	0.81098	12.47	3	0	Median	880130000	508080000	372050000	4903	1318	4599	9743;9744;9745	23734;23735;23736;23737;23738;23739;23740;23741	23735		8	9606
GETESEEFEK	1	0	Unmodified	1183.4881	0.48807771	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	11	0											1						11.499	11.499	2	0.0034426	4276	DP690-11	92.838	66.733			0.82539	1.004	NaN	1	0	Median	37380000	20522000	16858000	4904	1119	4600	9746	23742	23742		1	9606
GETLGLIGFGR	0	1	Unmodified	1118.6084	0.60840804	908	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	13	0													1				19.282	19.282	2	2.8614E-06	14539	DP690-13	199.7	161.89			0.96806	1.1715	NaN	1	0	Median	64204000	30065000	34140000	4905	908	4601	9747	23743;23744;23745	23743		3	9606
GETVNDCHAEIISR	0	1	Unmodified	1599.7311	0.73111872	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	9.67	0.943									2		1						12.247	12.247	2;3	2.6625E-05	5292	DP690-11	175.21	146			0.76797	0.80763	NaN	1	0	Median	610870000	357300000	253560000	4906	897	4602	9748;9749;9750	23746;23747;23748;23749;23750;23751	23748		6	9606
GETVPLDVLQIK	1	0	Unmodified	1310.7446	0.74456717	1406	Q53H12	AGK	Acylglycerol kinase, mitochondrial	yes	yes	0	0	0	13	0													1				19.669	19.669	2	0.0019138	15050	DP690-13	95.775	73.782			0.62405	0.7248	NaN	1	0	Median	33895000	21520000	12374000	4907	1406	4603	9751	23752;23753;23754;23755	23754		4	9606
GEVAYIDGQVLVPPGYGQDVR	0	1	Unmodified	2231.1222	0.12224699	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															19.539	19.539	2	5.958E-15	12991	DP690-2	172.32	152.64			0.85881	0.89545	NaN	1	0	Median	5067400	2760200	2307300	4908	602	4604	9752	23756;23757;23758;23759	23758		4	9606
GEVLEGSNAYYCEK	1	0	Unmodified	1617.6981	0.69808726	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2.5	0.5		1	1														14.503	14.503	2	5.4737E-05	7163	DP690-2	168.22	151.69			0.9532	0.98232	12.481	2	0	Median	22580000	12148000	10432000	4909	2418	4605	9753;9754	23760;23761;23762;23763;23764;23765;23766	23763		7	9606
GEVPCTVTSASPLEEATLSELK	1	0	Unmodified	2317.1359	0.13590772	773	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	15.5	0.5															1	1	20.161	20.161	2	3.7269999999999995E-19	15342	DP690-15	184	184			0.60111	0.70442	2.7868	2	0	Median	16710000	9682400	7027600	4910	773	4606	9755;9756	23767;23768;23769;23770;23771;23772;23773;23774;23775;23776	23768		10	9606
GEVRPELGSR	0	2	Unmodified	1098.5782	0.57817054	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	1	2	0		1															10.513	10.513	2	0.010198	2562	DP690-2	97.965	35.501			1.0986	1.0973	NaN	1	0	Median	30187000	14574000	15612000	4911	602	4607	9757	23777	23777		1	9606
GEVVRDFEIIDNHDYSYTVK	1	1	Unmodified	2398.1441	0.14410464	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	7.33	3.77		1								2							17.169	17.169	3	7.3822E-05	12698	DP690-10	109.37	92.222			1.0185	1.11	1.3822	2	0	Median	179900000	75237000	104660000	4912	1270	4608	9758;9759;9760	23778;23779;23780;23781;23782	23778		5	9606
GEYNVYSTFQSHEPEFDYLK	1	0	Unmodified	2452.0859	0.085921059	1015;1458	P63151;Q00005;Q66LE6	PPP2R2A;PPP2R2B;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	no	no	0	0	0	5	0					1												19.226	19.226	3	2.8213E-10	13341	DP690-5	154.74	154.74			1.7059	1.6981	NaN	1	0	Median	103280000	38953000	64328000	4913	1015;1458	4609	9761	23783;23784;23785;23786;23787	23785		5	9606
GEYQGVFHCAVETAK	1	0	Unmodified	1694.7723	0.77225526	2326	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	15	0															2		14.589	14.589	2;3	7.1096E-15	8159	DP690-15	225.79	204.96			0.78959	0.88349	0.35661	2	0	Median	313140000	173430000	139710000	4914	2326	4610	9762;9763	23788;23789;23790;23791;23792;23793;23794;23795	23789		8	9606
GFAAFLTELAER	0	1	Unmodified	1323.6823	0.68230126	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	6.5	3.5			1							1							22.962	22.962	2	0.0059115	20654	DP690-10	125.71	100.86			0.98	1.0804	NaN	1	0	Median	10673000	8406900	2265600	4915	1311	4611	9764;9765	23796;23797;23798;23799;23800;23801;23802	23796		7	9606
GFAFVQYVNER	0	1	Unmodified	1328.6513	0.65133548	410	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	14	0														1			18.616	18.616	2	1.9272E-06	13805	DP690-14	161.79	116.11			NaN	NaN	NaN	0	0	Median	287430000	287430000	0	4916	410	4612	9766	23803;23804	23804		2	9606
GFAFVTFDDHDSVDK	1	0	Unmodified	1698.7526	0.75256567	437	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	14	0														2			18.219	18.219	2;3	1.6243E-05	13264	DP690-14	147.62	96.838			0.90397	1.0621	1.081	2	0	Median	375380000	189780000	185600000	4917	437	4613	9767;9768	23805;23806;23807;23808	23806		4	9606
GFAFVTFDDHDSVDKIVIQK	2	0	Unmodified	2280.1426	0.14264808	437	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	14	0														1			18.955	18.955	4	0.0030456	14221	DP690-14	64.327	15.443			0.84537	0.9436	NaN	1	0	Median	181300000	96758000	84546000	4918	437	4614	9769	23809;23810;23811	23809		3	9606
GFAFVTFDDHDTVDK	1	0	Unmodified	1712.7682	0.76821573	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	14	0														2			18.27	18.27	2;3	7.56E-06	13323	DP690-14	152	129.51			0.78023	0.93821	22.713	2	0	Median	186910000	96781000	90130000	4919	848	4615	9770;9771	23812;23813;23814;23815	23812		4	9606
GFAFVTFDDHDTVDKIVVQK	2	0	Unmodified	2280.1426	0.14264808	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	14	0														2			18.961	18.961	3;4	1.6927E-05	13989	DP690-14	123.14	36.051			0.87434	0.97523	4.6629	2	0	Median	466530000	245510000	221020000	4920	848	4616	9772;9773	23816;23817;23818;23819;23820	23818		5	9606
GFAFVTFESPADAK	1	0	Unmodified	1485.714	0.71399532	692	P38159;Q96E39;O75526;Q8N7X1	RBMX;RBMXL1;RBMXL2;RBMXL3	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3	yes	no	0	0	0	13	0													1				19.933	19.933	2	7.8669E-05	15220	DP690-13	200.71	171.23			0.81622	0.91785	NaN	1	0	Median	157380000	82589000	74796000	4921	692	4617	9774	23821;23822;23823;23824;23825	23821		5	9606
GFALLNFVVK	1	0	Unmodified	1106.6488	0.64881629	89	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	7	4			1								1						22.184	22.184	2	0.0041129	17682	DP690-3	91.9	69.119			0.88611	1.0034	4.4835	2	0	Median	14574000	8098000	6475700	4922	89	4618	9775;9776	23826;23827;23828;23829;23830;23831	23830		6	9606
GFAQYELFK	1	0	Unmodified	1101.5495	0.54949617	2138	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	4	0				1													18.512	18.512	2	0.014453	13035	DP690-4	85.064	41.295			1.2797	1.3843	NaN	1	0	Median	8281600	3716600	4565000	4923	2138	4619	9777	23832	23832		1	9606
GFCFITFKEEEPVKK	3	0	Unmodified	1857.9335	0.93350692	1243	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	2	14	0														1			16.333	16.333	3	0.0021096	10683	DP690-14	88.224	54.911			0.85375	0.87566	NaN	1	0	Median	154520000	82532000	71985000	4924	1243	4620	9778	23833;23834;23835;23836	23833		4	9606
GFCFITYTDEEPVKK	2	0	Unmodified	1832.8655	0.86548694	127	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	1	14	0														1			17.236	17.236	3	6.0585E-05	11920	DP690-14	116.98	98.158			0.81762	0.9132	NaN	1	0	Median	147980000	74303000	73675000	4925	127	4621	9779	23837;23838;23839	23837		3	9606
GFCFLEYEDHK	1	0	Unmodified	1443.6129	0.61290107	176;207	O43390;O60506	HNRNPR;SYNCRIP	Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q	no	no	0	0	0	9.75	3.34				1							1	2					17.235	17.235	2;3	2.6448E-05	12186	DP690-12	108.7	97.438			0.88808	1.0135	2.9493	4	0	Median	476060000	249330000	226730000	4926	176;207	4622	9780;9781;9782;9783	23840;23841;23842;23843;23844;23845;23846;23847;23848;23849;23850	23844		11	9606
GFDALQESSLDSGMSGR	0	1	Oxidation (M)	1771.7683	0.76829209	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	1	0	9	0									1								16.521	16.521	2	0.0035211	10547	DP690-9	107.17	74.56			NaN	NaN	NaN	0	0	Median	2584800	2584800	0	4927	1891	4623	9784	23851;23852	23851	2437	2	9606
GFDALQYQEHLDYEIIQSLNPEFNK	1	0	Unmodified	3010.4349	0.43486693	2085	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	11	0											1						24.063	24.063	3	0.045701	21857	DP690-11	36.613	25.526			0.69051	0.83432	NaN	1	0	Median	5200600	3247500	1953200	4928	2085	4624	9785	23853;23854	23854		2	9606
GFDILGIKPVQR	1	1	Unmodified	1341.7769	0.77687035	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	6.67	3.77				2								1					17.784	17.784	2;3	0.00013283	12808	DP690-12	117.52	100.95			0.99621	1.1362	14.729	3	0	Median	101630000	56413000	45221000	4929	886	4625	9786;9787;9788	23855;23856;23857;23858;23859;23860;23861;23862;23863;23864	23855		10	9606
GFDPNQLSVATLLFEGDREK	1	1	Unmodified	2235.1172	0.11716161	61	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	1	12	0												1					21.788	21.788	3	0.00053323	18088	DP690-12	168.16	134.81			NaN	NaN	NaN	0	0	Median	6823000	6823000	0	4930	61	4626	9789	23865;23866	23866		2	9606
GFDTSSSSSNSAASSSFK	1	0	Unmodified	1752.7439	0.74385148	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	10	0										1							13.3	13.3	2	1.7998E-22	7021	DP690-10	223.36	204.26			0.87966	1.0881	NaN	1	0	Median	69680000	34643000	35037000	4931	807	4627	9790	23867;23868;23869	23867		3	9606
GFELLYQPEVVR	0	1	Unmodified	1448.7664	0.76636524	69	O00192	ARVCF	Armadillo repeat protein deleted in velo-cardio-facial syndrome	yes	yes	0	0	0	11	0											1						19.804	19.804	2	0.0020165	16408	DP690-11	94.692	66.92			1.6844	2.0211	NaN	1	0	Median	61735000	26299000	35436000	4932	69	4628	9791	23870;23871	23871		2	9606
GFEVVYMTEPIDEYCVQQLK	1	0	Unmodified	2447.1389	0.13888461	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	7	4			1								1						21.436	21.436	2	1.8722E-17	16846	DP690-3	201.09	62.89			0.95033	0.99967	NaN	1	0	Median	7398100	3378500	4019600	4933	416	4629	9792;9793	23872;23873;23874;23875;23876	23874		5	9606
GFEVVYMTEPIDEYCVQQLK	1	0	Oxidation (M)	2463.1338	0.13379923	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	3	0			2														20.028	20.028	2	1.7969E-30	15112	DP690-3	243.4	88.731			0.90025	0.93178	NaN	1	0	Median	82951000	46150000	36802000	4934	416	4629	9794;9795	23877;23878;23879;23880;23881;23882;23883;23884;23885	23879	464	9	9606
GFFDPNTEENLTYLQLMER	0	1	Oxidation (M)	2332.0682	0.068162505	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	10	0.816									1	1	1						21.401	21.401	2	2.4751E-06	18621	DP690-10	138.55	123			0.76901	0.95666	4.8306	3	0	Median	114240000	66993000	47245000	4935	1319	4630	9796;9797;9798	23886;23887;23888;23889;23890;23891;23892;23893;23894;23895;23896	23886	2019	11	9606
GFFDPNTEENLTYLQLMER	0	1	Unmodified	2316.0732	0.073247883	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							22.957	22.957	2	3.2489E-37	18253	DP690-9	289.38	268.37			0.74673	0.93466	6.6981	2	0	Median	23347000	12140000	11207000	4936	1319	4630	9799;9800	23897;23898;23899;23900;23901;23902;23903;23904;23905;23906;23907;23908	23903		12	9606
GFFDPNTHENLTYLQLLER	0	1	Unmodified	2306.1331	0.13314602	1319	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	yes	no	0	0	0	10.3	1.37									2	2	1		1				21.302	21.302	2;3	1.7582000000000002E-30	16395	DP690-9	241.11	207.1			0.77982	0.8813	32.964	5	0	Median	397300000	204990000	192310000	4937	1319	4631	9801;9802;9803;9804;9805;9806	23909;23910;23911;23912;23913;23914;23915;23916;23917;23918;23919;23920;23921;23922;23923;23924;23925	23923		17	9606
GFFDPNTHENLTYR	0	1	Unmodified	1709.7798	0.77978347	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.8	0.748									2	2	1						16.35	16.35	2;3	2.7001E-14	11458	DP690-10	216.83	202.23			0.77599	0.87309	13.698	5	0	Median	1089200000	610550000	478660000	4938	1319	4632	9807;9808;9809;9810;9811	23926;23927;23928;23929;23930;23931;23932;23933;23934;23935;23936;23937;23938;23939;23940	23927		14	9606
GFFEGTIASK	1	0	Unmodified	1055.5288	0.52876073	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														16.475	16.475	2	0.0011627	10617	DP690-3	107.69	49.089			2.0122	2.1105	NaN	1	0	Median	49682000	17157000	32524000	4939	878	4633	9812	23941;23942	23942		2	9606
GFFELFPSLSHNLLVD	0	0	Unmodified	1833.9301	0.93013611	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	5	0					1												25.363	25.363	2	0.019291	20642	DP690-5	94.538	46.494			NaN	NaN	NaN	0	0	Median	0	0	0	4940	2385	4634	9813	23943;23944;23945	23943		3	9606
GFGDGYNGYGGGPGGGNFGGSPGYGGGR	0	1	Unmodified	2494.0323	0.03226278	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	14	0														1			17.072	17.072	2	5.6269E-34	11828	DP690-14	198.67	183.04			0.72778	0.87769	NaN	1	0	Median	64568000	37503000	27065000	4941	563	4635	9814	23946;23947;23948;23949	23949		4	9606
GFGFVCFSSPEEATK	1	0	Unmodified	1661.7396	0.73955814	471	P11940;Q9H361;Q13310;Q4VXU2	PABPC1;PABPC3;PABPC4;PABPC1L	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1-like	yes	no	0	0	0	9	3.56				1							1	1					19.443	19.443	2	1.6243E-05	14066	DP690-4	166.14	144.77			1.0874	1.269	3.6991	3	0	Median	123370000	60778000	62592000	4942	471	4636	9815;9816;9817	23950;23951;23952;23953;23954;23955;23956;23957;23958;23959;23960	23959		11	9606
GFGFVDFLTK	1	0	Unmodified	1129.5808	0.5807963	2485	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	11	0											1						22.23	22.23	2	0.0085223	19607	DP690-11	85.731	52.918			1.0157	1.2104	NaN	1	0	Median	3670000	2088000	1582000	4943	2485	4637	9818	23961	23961		1	9606
GFGFVDFNSEEDAK	1	0	Unmodified	1560.6733	0.67325272	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	8.67	4.03			1								1	1					19.337	19.337	2	5.827E-15	15619	DP690-11	242.59	192.56			0.9031	1.0055	11.874	3	0	Median	329230000	167600000	161630000	4944	534	4638	9819;9820;9821	23962;23963;23964;23965;23966;23967;23968;23969;23970	23962		9	9606
GFGFVLFK	1	0	Unmodified	913.50617	0.5061748	1243;127	Q14103;O14979	HNRNPD;HNRNPDL	Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like	no	no	0	0	0	14	0														1			20.936	20.936	1	0.063641	16736	DP690-14	107.55	107.55			0.95884	1.1433	NaN	1	0	Median	17998000	8847800	9150200	4945	1243;127	4639	9822	23971	23971		0	9606
GFGFVSFER	0	1	Unmodified	1044.5029	0.50288033	471	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	0	9.75	3.34				1							1	2					19.009	19.009	2	0.00057737	14563	DP690-12	147.34	110.58			1.1522	1.3547	10.929	2	0	Median	99100000	71366000	27734000	4946	471	4640	9823;9824;9825;9826	23972;23973;23974;23975;23976;23977;23978	23973		7	9606
GFGFVTFDDHDPVDK	1	0	Unmodified	1694.7577	0.75765105	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	14	0														1			18.419	18.419	3	5.2027E-06	13536	DP690-14	133.04	115.35			0.88597	0.99851	NaN	1	0	Median	386020000	200020000	185990000	4947	563	4641	9827	23979;23980;23981;23982	23982		4	9606
GFGFVTFDDHDPVDKIVLQK	2	0	Unmodified	2276.1477	0.14773345	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	14	0														2			19.629	19.629	3;4	5.6086E-05	15166	DP690-14	112.57	87.374			0.80476	0.89678	0.29341	2	0	Median	610290000	317600000	292680000	4948	563	4642	9828;9829	23983;23984;23985;23986;23987;23988;23989;23990	23990		8	9606
GFGFVTFSSMAEVDAAMAARPHSIDGR	0	2	2 Oxidation (M)	2858.3116	0.31159745	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	2	1	14	0														1			18.824	18.824	4	0.00038	14052	DP690-14	62.005	54.719			0.72646	0.85372	NaN	1	0	Median	91248000	56826000	34422000	4949	563	4643	9830	23991;23992;23993;23994	23993	735;736	4	9606
GFGFVTFSSMAEVDAAMAARPHSIDGR	0	2	Oxidation (M)	2842.3167	0.31668283	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	1	14	0														1			19.799	19.799	4	0.00038445	15089	DP690-14	65.438	53.242			0.7957	0.93508	NaN	1	0	Median	115520000	63892000	51625000	4950	563	4643	9831	23995;23996;23997	23995	735;736	3	9606
GFGFVTFSSMAEVDAAMAARPHSIDGR	0	2	Unmodified	2826.3218	0.3217682	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	14	0														1			20.869	20.869	4	4.5107E-05	16763	DP690-14	79.341	69.023			0.977	1.1481	NaN	1	0	Median	51898000	26002000	25896000	4951	563	4643	9832	23998	23998		1	9606
GFGFVTYATVEEVDAAMNARPHK	1	1	Oxidation (M)	2525.2009	0.20090801	437	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	1	14	0														2			18.618	18.618	3;4	4.6767E-05	13731	DP690-14	122.1	106.12			0.8192	0.93555	6.2833	2	0	Median	399130000	199330000	199790000	4952	437	4644	9833;9834	23999;24000;24001;24002;24003;24004;24005;24006	24000	505	8	9606
GFGFVTYATVEEVDAAMNARPHK	1	1	Unmodified	2509.206	0.20599339	437	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	1	14	0														2			20.661	20.661	3;4	8.2146E-16	16424	DP690-14	174.65	148.25			0.82805	0.95398	9.3509	2	0	Median	336200000	183840000	152360000	4953	437	4644	9835;9836	24007;24008;24009;24010;24011;24012;24013	24013		7	9606
GFGFVTYSCVEEVDAAMCAR	0	1	Oxidation (M)	2283.9599	0.95987438	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	1	0	14	0														1			19.795	19.795	2	0.00052981	15363	DP690-14	104.81	84.569			1.2968	1.5884	NaN	1	0	Median	15809000	7444800	8364400	4954	848	4645	9837	24014;24015;24016	24015	1274	3	9606
GFGFVYFQNHDAADK	1	0	Unmodified	1714.774	0.77396981	1186	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	14	0														2			17.456	17.456	2;3	0.0014067	12263	DP690-14	80.746	60.992			0.92738	1.1111	NaN	1	0	Median	119140000	62533000	56604000	4955	1186	4646	9838;9839	24017;24018;24019	24017		3	9606
GFGGITHGPPEKK	2	0	Unmodified	1323.6935	0.69353465	800	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	1	4	0				1													10.354	10.354	3	0.0016978	2689	DP690-4	81.709	35.83			0.75113	0.77806	NaN	1	0	Median	19206000	10343000	8863100	4956	800	4647	9840	24020;24021	24020		2	9606
GFGYGQGAGALVHAQ	0	0	Unmodified	1431.6895	0.6895119	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	0	15.1	0.3															9	1	23.574	23.574	2	0.0033733	10036	DP690-16	123.75	87.805			NaN	NaN	NaN	0	0	Median	0	0	0	4957	1354	4648	9841;9842;9843;9844;9845;9846;9847;9848;9849;9850	24022;24023;24024;24025;24026;24027;24028;24029;24030;24031;24032;24033;24034;24035;24036;24037	24037		16	9606
GFGYKGSCFHR	1	1	Unmodified	1314.5928	0.59277475	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	1	8	0								1									11.344	11.344	3	0.034265	4010	DP690-8	55.721	34.152			0.81175	0.94385	NaN	1	0	Median	1829500	969100	860430	4958	1008	4649	9851	24038	24038		1	9606
GFHQVPFAPIVFIER	0	1	Unmodified	1755.9461	0.94606094	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	7	4			1								1						20.351	20.351	3	0.0082983	15493	DP690-3	64.675	50.884			0.80937	0.94842	22.136	2	0	Median	99748000	55846000	43902000	4959	770	4650	9852;9853	24039;24040;24041;24042	24041		4	9606
GFHTTIDIGVK	1	0	Unmodified	1186.6346	0.63462279	1330	Q15417	CNN3	Calponin-3	yes	yes	0	0	0	14	0														1			14.796	14.796	3	0.00031085	8593	DP690-14	107.45	44.028			1.6877	2.0286	NaN	1	0	Median	111970000	36187000	75780000	4960	1330	4651	9854	24043;24044	24043		2	9606
GFITIVDVQR	0	1	Unmodified	1146.6397	0.63970816	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	8	4				1								1					18.439	18.439	2	0.0056868	13793	DP690-12	89.698	47.508			0.6897	0.82634	NaN	1	0	Median	27048000	17219000	9828400	4961	737	4652	9855;9856	24045;24046;24047	24046		3	9606
GFIYVHKPPVHIR	1	1	Unmodified	1561.8882	0.88815213	1139	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	1	11	0											1						12.815	12.815	4	0.030309	6175	DP690-11	65.695	42.018			NaN	NaN	NaN	0	0	Median	4238200	4238200	0	4962	1139	4653	9857	24048	24048		1	9606
GFKDQIYDIFQK	2	0	Unmodified	1500.7613	0.76127986	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	1	13	0													2				19.046	19.046	2;3	1.6261E-09	14151	DP690-13	231.07	180.62			0.94961	1.0473	10.992	2	0	Median	449210000	224300000	224910000	4963	927	4654	9858;9859	24049;24050;24051;24052;24053;24054;24055	24054		7	9606
GFKDQIYEIFQK	2	0	Unmodified	1514.7769	0.77692993	1266	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	0	1	13	0													1				19.157	19.157	3	0.040654	14358	DP690-13	82.85	52.308			NaN	NaN	NaN	0	0	Median	28002000	0	28002000	4964	1266	4655	9860	24056;24057	24056		2	9606
GFLEFVEDFIQVPR	0	1	Unmodified	1694.8668	0.86680757	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	11	0											1						27.174	27.174	2	2.9592E-05	25117	DP690-11	173.64	139.75			0.95898	1.14	NaN	1	0	Median	2595500	1332700	1262800	4965	829	4656	9861	24058;24059;24060;24061	24059		4	9606
GFLKEEDLTEK	2	0	Unmodified	1307.6609	0.66089712	666	P35520	CBS	Cystathionine beta-synthase	yes	yes	0	0	1	4	0				1													14.174	14.174	2	8.0098E-05	7399	DP690-4	256.24	181.2			0.84174	0.88072	NaN	1	0	Median	78722000	41806000	36915000	4966	666	4657	9862	24062;24063	24063		2	9606
GFLLDGDFFVAASLATTLTK	1	0	Unmodified	2086.0987	0.098657997	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	11	0											2						26.606	26.606	2	0.032174	24656	DP690-11	84.759	52.192			NaN	NaN	NaN	0	0	Median	518270	0	518270	4967	877	4658	9863;9864	24064;24065	24064		2	9606
GFLNQFTEDKPTLNFFYQQVK	2	0	Unmodified	2563.2747	0.27472488	1117	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	1	11	0											1						21.451	21.451	3	0.00027019	18567	DP690-11	95.205	74.117			1.0006	1.1807	NaN	1	0	Median	45987000	23509000	22478000	4968	1117	4659	9865	24066;24067;24068	24066		3	9606
GFLTERDDILCPDCGK	1	1	Unmodified	1894.8553	0.85533296	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	10	4						1								1			17.239	17.239	3	0.0013665	11989	DP690-14	80.102	69.443			1.0005	1.1368	1.0659	2	0	Median	148920000	76130000	72791000	4969	1258	4660	9866;9867	24069;24070;24071;24072;24073;24074;24075	24070		7	9606
GFLTERDDILCPDCGKDI	1	1	Unmodified	2122.9663	0.96633997	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	2	11.3	3.77						1								2			18.406	18.406	2;3	0.00086486	12192	DP690-6	89.344	58.925			0.89667	0.92758	17.532	3	0	Plateau	716190000	356850000	359340000	4970	1258	4661	9868;9869;9870	24076;24077;24078;24079;24080;24081;24082;24083;24084;24085;24086	24085		11	9606
GFLTIFEDVSGFGAWHR	0	1	Unmodified	1937.9424	0.94243213	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10	0.707									1	2	1						24.139	24.139	2;3	4.0092E-13	22054	DP690-10	204.18	204.18			0.98039	1.2069	29.845	2	0	Median	19101000	9414900	9686500	4971	2190	4662	9871;9872;9873;9874	24087;24088;24089;24090;24091;24092;24093;24094;24095;24096;24097	24087		11	9606
GFNEVIPQHLLK	1	0	Unmodified	1393.7718	0.77178497	2156	Q9HAU4	SMURF2	E3 ubiquitin-protein ligase SMURF2	yes	yes	0	0	0	11	0											1						17.006	17.006	3	0.0088217	12268	DP690-11	69.216	48.901			0.93928	1.1341	NaN	1	0	Median	88455000	40624000	47831000	4972	2156	4663	9875	24098;24099	24098		2	9606
GFNKETAAACVEK	2	0	Unmodified	1423.6766	0.67656396	1340	Q15631	TSN	Translin	yes	yes	0	0	1	11	4							1								1		11.08	11.08	3	0.013111	3636	DP690-7	55.213	55.213			0.88253	0.97616	15.41	2	0	Median	19496000	9924400	9571300	4973	1340	4664	9876;9877	24100;24101;24102;24103	24103		4	9606
GFNLPYQDAR	0	1	Unmodified	1179.5673	0.5672715	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	7	4			1								1						16.612	16.612	2	0.0011808	11749	DP690-11	107.57	78.425			0.82263	0.95197	12.568	2	0	Median	167150000	90066000	77079000	4974	1687	4665	9878;9879	24104;24105;24106;24107;24108;24109	24105		6	9606
GFNPPVLVFVQSIER	0	1	Unmodified	1700.925	0.92499115	2443	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	0	12	0												1					23.909	23.909	2	0.01849	20377	DP690-12	68.536	46.49			0.76548	0.93379	NaN	1	0	Median	2295600	1216500	1079100	4975	2443	4666	9880	24110;24111;24112	24111		3	9606
GFPPSASLCLLDLVK	1	0	Unmodified	1615.8644	0.86436473	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									2	2							22.983	22.983	2	1.3078E-05	20179	DP690-10	130.1	76.415			0.75069	0.9582	6.2439	3	0	Median	93879000	57953000	35926000	4976	1046	4667	9881;9882;9883;9884	24113;24114;24115;24116;24117;24118;24119;24120;24121;24122	24114		10	9606
GFPTIYFSPANK	1	0	Unmodified	1340.6765	0.6764876	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	4	0				1													18.924	18.924	2	8.9268E-05	13407	DP690-4	169.65	150.34			0.87045	0.95108	NaN	1	0	Median	18210000	9486800	8723500	4977	623	4668	9885	24123;24124;24125;24126	24126		4	9606
GFQEVVTPNIFNSR	0	1	Unmodified	1606.8104	0.81035532	596	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														19.396	19.396	2	0.0011384	14460	DP690-3	98.898	78.768			0.98592	1.1176	NaN	1	0	Median	10607000	6067800	4538800	4978	596	4669	9886	24127;24128	24127		2	9606
GFQSLLSEVNR	0	1	Unmodified	1248.6463	0.64625011	818	P50452	SERPINB8	Serpin B8	yes	yes	0	0	0	6	0						1											18.829	18.829	2	0.00017791	12723	DP690-6	143.7	117.97			0.86735	0.99464	NaN	1	0	Median	7587100	4198600	3388600	4979	818	4670	9887	24129;24130	24130		2	9606
GFSAISCTVEGAPASFGK	1	0	Unmodified	1784.8403	0.84033482	1848	Q96EY5	MVB12A	Multivesicular body subunit 12A	yes	yes	0	0	0	14	0														1			18.158	18.158	2	3.2307E-06	13206	DP690-14	134.21	116.49			0.80371	0.97813	NaN	1	0	Median	41167000	20318000	20849000	4980	1848	4671	9888	24131;24132;24133	24131		3	9606
GFSELSTLEVLPQVYNVR	0	1	Unmodified	2050.0735	0.073505879	1857	Q96FX7	TRMT61A	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	yes	yes	0	0	0	7	0							1										22.132	22.132	2	1.7863E-06	17060	DP690-7	138.24	120.54			1.3449	1.5269	NaN	1	0	Median	3916600	1568500	2348100	4981	1857	4672	9889	24134;24135	24134		2	9606
GFSLEELR	0	1	Unmodified	949.4869	0.48689592	593	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	15	0															1		17.876	17.876	1	0.0020005	12558	DP690-15	124.59	26.992			NaN	NaN	NaN	0	0	Median	7923300	7923300	0	4982	593	4673	9890	24136;24137	24136		2	9606
GFSLLATEDKEALKK	3	0	Unmodified	1648.9036	0.903587	439	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	11	0											2						14.578	14.578	3	3.4501E-05	8786	DP690-11	124.42	94.241			1.1345	1.2289	NaN	1	0	Median	160920000	80632000	80286000	4983	439	4674	9891;9892	24138;24139	24138		2	9606
GFSSGSAVVSGGSR	0	1	Unmodified	1253.6	0.60002819	44;49	P35908;CON__P35908v2;CON__P35908;CON__Q3TTY5	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	4.67	3.3	1			1					1								12.436	12.436	2	0.00035922	4271	DP690-1	141.91	109.56		+	NaN	NaN	NaN	0	0	Median	150550000	150550000	0	4984	44;49	4675	9893;9894;9895	24140;24141;24142;24143;24144;24145	24141		6	9606
GFSSGSAVVSGGSRR	0	2	Unmodified	1409.7011	0.70113922	44;49	P35908;CON__P35908v2;CON__P35908;CON__Q3TTY5	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	1	4	0				1													10.708	10.708	3	0.0068112	3124	DP690-4	131.06	102.16		+	NaN	NaN	NaN	0	0	Median	29745000	29745000	0	4985	44;49	4676	9896	24146;24147	24147		2	9606
GFTNLDEPSNFSSR	0	1	Unmodified	1569.7059	0.70594983	294	O94851	MICAL2	Protein-methionine sulfoxide oxidase MICAL2	yes	yes	0	0	0	11	0											1						16.383	16.383	2	0.040697	11465	DP690-11	59.367	40.557			1.0421	1.2436	NaN	1	0	Median	35160000	17035000	18126000	4986	294	4677	9897	24148	24148		1	9606
GFVFITFKEEEPVKK	3	0	Unmodified	1796.9713	0.97127264	1954	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	2	14	0														2			16.757	16.757	3;4	2.026E-05	11381	DP690-14	125.84	102.93			0.72555	0.74417	14.419	2	0	Median	91729000	54190000	37539000	4987	1954	4678	9898;9899	24149;24150;24151	24151		3	9606
GFVLQDTVEQLR	0	1	Unmodified	1403.7409	0.74087877	905	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	11	0											1						19.246	19.246	2	0.0030924	15558	DP690-11	128.91	46.075			NaN	NaN	NaN	0	0	Median	44861000	0	44861000	4988	905	4679	9900	24152	24152		1	9606
GFVQVDDGRK	1	1	Unmodified	1119.5673	0.5672715	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	12	0												1					11.117	11.117	2	0.016089	3678	DP690-12	87.308	48.532			0.86786	1.0314	NaN	1	0	Median	84041000	40666000	43374000	4989	886	4680	9901	24153;24154	24154		2	9606
GFWYDAEISR	0	1	Unmodified	1242.5669	0.56693715	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	11	0											1						18.562	18.562	2	0.00042361	14601	DP690-11	120.87	92.66			0.6155	0.73523	NaN	1	0	Median	47477000	29467000	18010000	4990	1932	4681	9902	24155;24156	24156		2	9606
GFYDKDSSGWSSSK	2	0	Unmodified	1549.6685	0.66850169	96	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	1	11.5	0.5											1	1					13.49	13.49	2	8.4032E-09	7214	DP690-11	206.74	183.6			0.98138	1.1363	6.0835	2	0	Median	120640000	59819000	60817000	4991	96	4682	9903;9904	24157;24158;24159;24160;24161;24162;24163;24164	24157		8	9606
GGAAPEGPNEAEVTSGKPEQEVPDAEEEK	2	0	Unmodified	2950.3316	0.33158365	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	1	3	0			1														13.882	13.882	3	1.5318E-06	7164	DP690-3	123.74	111.55			0.57376	0.62093	NaN	1	0	Median	18907000	10297000	8610500	4992	788	4683	9905	24165;24166;24167;24168	24167		4	9606
GGAEGELQALR	0	1	Unmodified	1099.5622	0.56218613	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								14.702	14.702	2	4.9668E-05	8037	DP690-9	178.94	128.24			0.90628	1.0045	NaN	1	0	Median	143050000	75500000	67547000	4993	1319	4684	9906	24169;24170;24171;24172;24173	24171		5	9606
GGAEQFMEETER	0	1	Oxidation (M)	1398.5722	0.57215846	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	0	8	4				1								1					12.656	12.656	2	2.3036E-08	5288	DP690-4	211.86	185.76			1.1413	1.3096	46.614	2	0	Median	86398000	42255000	44143000	4994	1959	4685	9907;9908	24174;24175;24176;24177;24178;24179;24180;24181;24182	24180	2498	9	9606
GGAEQFMEETER	0	1	Unmodified	1382.5772	0.57724384	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	8	4				1								1					15.395	15.395	2	2.7894E-05	9597	DP690-12	187.97	135.48			1.1301	1.3286	30.378	2	0	Median	47904000	25512000	22392000	4995	1959	4685	9909;9910	24183;24184;24185;24186;24187	24186		5	9606
GGAPAEGEGAAETLPEASR	0	1	Unmodified	1768.8228	0.8227705	2522	Q9Y6K1	DNMT3A	DNA (cytosine-5)-methyltransferase 3A	yes	yes	0	0	0	11	0											3						13.804	13.804	2	2.3931E-08	7691	DP690-11	161.87	124.15			NaN	NaN	NaN	0	0	Median	29383000	15346000	14037000	4996	2522	4686	9911;9912;9913	24188;24189;24190	24189		3	9606
GGCGVVGGGGSCSSVGGASGGER	0	1	Unmodified	1966.8221	0.82213535	129	O15014	ZNF609	Zinc finger protein 609	yes	yes	0	0	0	10	0										1							11.716	11.716	2	1.8465E-06	4732	DP690-10	160.8	121.85			NaN	NaN	NaN	0	0	Median	0	0	0	4997	129	4687	9914	24191	24191		1	9606
GGCPGGEATLSQPPPR	0	1	Unmodified	1579.7413	0.74128948	541	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	11	4							1								1		12.361	12.361	2	4.1744E-06	5093	DP690-15	147.62	125.63			0.63557	0.72612	NaN	1	0	Median	45704000	29292000	16412000	4998	541	4688	9915;9916	24192;24193;24194;24195;24196;24197;24198	24194		7	9606
GGDLMAYDR	0	1	Oxidation (M)	1012.4284	0.42839476	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	0	12	0												1					12.063	12.063	2	0.007571	4872	DP690-12	101.54	74.017			0.82457	0.88768	NaN	1	0	Median	507820000	277250000	230560000	4999	959	4689	9917	24199;24200;24201;24202;24203	24202	1475	5	9606
GGDLMAYDR	0	1	Unmodified	996.43348	0.43348014	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	12	0												1					14.207	14.207	2	0.001952	7899	DP690-12	115.49	78.907			0.86721	0.9413	NaN	1	0	Median	431230000	229210000	202020000	5000	959	4689	9918	24204;24205	24205		2	9606
GGDLMAYDRR	0	2	Oxidation (M)	1168.5295	0.52950579	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	1	12	0												1					10.773	10.773	3	0.035481	3214	DP690-12	50.473	21			0.7892	0.89482	NaN	1	0	Median	78815000	42506000	36309000	5001	959	4690	9919	24206;24207	24206	1475	2	9606
GGDLMAYDRR	0	2	Unmodified	1152.5346	0.53459117	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	12	0												2					12.553	12.553	2;3	0.00067882	5485	DP690-12	124.08	81.971			0.8552	0.96966	NaN	1	0	Median	519240000	276100000	243140000	5002	959	4690	9920;9921	24208;24209;24210;24211;24212;24213	24210		6	9606
GGDSIGETPTPGASK	1	0	Unmodified	1372.647	0.64703797	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	9	0									1								11.842	11.842	2	0.012084	4375	DP690-9	102.05	60.621			NaN	NaN	NaN	0	0	Median	2080300	2080300	0	5003	263	4691	9922	24214;24215	24215		2	9606
GGDVFGDTSFLSNHGGSSGSTHR	0	1	Unmodified	2277.9999	0.99990002	1074	Q00587	CDC42EP1	Cdc42 effector protein 1	yes	yes	0	0	0	13	0													1				15.326	15.326	3	0.035081	9212	DP690-13	66.906	41.997			NaN	NaN	NaN	0	0	Median	0	0	0	5004	1074	4692	9923	24216	24216		1	9606
GGELVYTDSEAR	0	1	Unmodified	1295.5994	0.59935949	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.6	0.8									3	1	1						13.611	13.611	2	8.6492E-05	7435	DP690-10	142.36	107.97			0.83491	0.95081	2.6759	3	0	Plateau	548560000	293500000	255060000	5005	1319	4693	9924;9925;9926;9927;9928	24217;24218;24219;24220;24221;24222;24223;24224;24225;24226;24227	24218		11	9606
GGELVYTDSEARDVFEK	1	1	Unmodified	1913.9007	0.90068647	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								16.481	16.481	3	0.0065581	10467	DP690-9	91.657	76.698			0.77876	0.90322	NaN	1	0	Median	13890000	8794500	5095100	5006	1319	4694	9929	24228;24229	24229		2	9606
GGFSFGNVEPASLPSASVFVLGR	0	1	Unmodified	2294.1695	0.16953153	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	10	0										1							23.102	23.102	2	5.1347E-09	20854	DP690-10	155.57	114.09			NaN	NaN	NaN	0	0	Median	7543900	7543900	0	5007	807	4695	9930	24230	24230		1	9606
GGGAASGGGVASSGAGGQQPPQQPR	0	1	Unmodified	2135.0104	0.010405126	1244	Q14106	TOB2	Protein Tob2	yes	yes	0	0	0	14	0														1			10.755	10.755	2	1.8593E-05	3130	DP690-14	123.76	89.372			NaN	NaN	NaN	0	0	Median	0	0	0	5008	1244	4696	9931	24231	24231		1	9606
GGGAFVQNSQPVAVR	0	1	Unmodified	1485.7688	0.76882486	648	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	3	0			1														13.85	13.85	2	9.5361E-07	7094	DP690-3	185.08	151.21			1.0595	1.2161	NaN	1	0	Median	16018000	6599000	9419000	5009	648	4697	9932	24232;24233	24233		2	9606
GGGAGGSSVGTGGGGTGGVGGGAGSEDSGDR	0	1	Unmodified	2393.0076	0.0075641716	1126	Q06587	RING1	E3 ubiquitin-protein ligase RING1	yes	yes	0	0	0	13	0													1				11.23	11.23	2	1.8495E-76	3644	DP690-13	291.28	281.62			0.79673	0.98249	NaN	1	0	Median	20847000	12077000	8770500	5010	1126	4698	9933	24234;24235;24236;24237;24238;24239	24237		6	9606
GGGALSAVAATK	1	0	Unmodified	1001.5506	0.55055881	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	13	0													1				12.541	12.541	2	0.00043972	5381	DP690-13	113.93	113.93			0.95175	1.0976	NaN	1	0	Median	81946000	41523000	40423000	5011	934	4699	9934	24240;24241	24241		2	9606
GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR	0	1	Unmodified	2398.0111	0.011133407	44	P35908;CON__P35908v2	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	7.75	1.92					1		1		1	1							19.006	19.006	2	2.9622999999999997E-44	13713	DP690-9	218.64	186.92		+	NaN	NaN	NaN	0	0	Median	24977000	24977000	0	5012	44	4700	9935;9936;9937;9938	24242;24243;24244;24245;24246;24247;24248;24249	24249		8	9606
GGGFGGNDNFGR	0	1	Unmodified	1153.4901	0.49008381	437	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	0	14	0														1			13.503	13.503	2	0.007401	6839	DP690-14	79.489	45.4			0.79719	0.96587	NaN	1	0	Median	39354000	20640000	18714000	5013	437	4701	9939	24250;24251;24252;24253	24251		4	9606
GGGGGGFRGFSSGSAVVSGGSR	0	2	Unmodified	1898.8983	0.89833548	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	4	0				1													13.942	13.942	3	0.0017084	7156	DP690-4	87.793	48.018		+	NaN	NaN	NaN	0	0	Median	13958000	13958000	0	5014	44	4702	9940	24254;24255	24255		2	9606
GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR	0	1	Unmodified	2382.9446	0.94456998	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	8.28	4.47	1	1	1	2	1	1	1	1	2	1	1	1	1	1	1	1	11.957	11.957	2;3	0	4554	DP690-7	454.28	324.27		+	NaN	NaN	NaN	0	0	Median	371850000	371850000	0	5015	369	4703	9941;9942;9943;9944;9945;9946;9947;9948;9949;9950;9951;9952;9953;9954;9955;9956;9957;9958	24256;24257;24258;24259;24260;24261;24262;24263;24264;24265;24266;24267;24268;24269;24270;24271;24272;24273;24274;24275;24276;24277;24278;24279;24280;24281;24282;24283;24284;24285;24286;24287;24288;24289;24290;24291;24292;24293;24294;24295;24296;24297;24298;24299;24300;24301;24302;24303;24304	24295		49	9606
GGGGNFGPGPGSNFR	0	1	Unmodified	1376.6222	0.62216062	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	11.7	4.03						1								1	1		13.99	13.99	2	4.5345E-06	7401	DP690-14	176.78	147.82			0.72502	0.89623	8.1008	3	0	Plateau	863650000	494510000	369150000	5016	563	4704	9959;9960;9961	24305;24306;24307;24308;24309;24310;24311;24312;24313;24314;24315;24316	24308		12	9606
GGGGPGGGGPGGGSAGGPSQPPGGGGPGIR	0	1	Unmodified	2269.0584	0.058417951	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	7	4			1								1						12.481	12.481	2	3.8342000000000003E-101	5674	DP690-11	340.48	340.48			0.56803	0.66608	32.216	2	0	Median	101660000	55111000	46550000	5017	1798	4705	9962;9963	24317;24318;24319;24320;24321;24322;24323;24324	24317		8	9606
GGGGPGGGGPGGGSAGGPSQPPGGGGPGIRK	1	1	Unmodified	2397.1534	0.15338097	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	1	11	0											2						10.777	10.777	3	2.8668E-05	3290	DP690-11	67.388	52.429			0.51572	0.63801	NaN	1	0	Median	23637000	15163000	8473800	5018	1798	4706	9964;9965	24325;24326	24325		2	9606
GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR	0	1	Unmodified	2704.1538	0.15383448	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	5.5	2.96	1				1		1		1								19.01	19.01	2	7.030800000000001E-78	13669	DP690-9	252.66	215.49		+	NaN	NaN	NaN	0	0	Median	27370000	27370000	0	5019	667	4707	9966;9967;9968;9969	24327;24328;24329;24330;24331;24332;24333;24334;24335	24334		9	9606
GGGHVAQIYAIR	0	1	Unmodified	1240.6677	0.66765425	969	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	13.3	3.77								1								2	13.03	13.03	2;3	6.0745E-05	5917	DP690-16	146.11	126.45			0.96054	0.9803	7.6253	3	0	Plateau	931250000	477660000	453590000	5020	969	4708	9970;9971;9972	24336;24337;24338;24339;24340;24341;24342;24343;24344;24345;24346;24347	24336		12	9606
GGGLSLLPPPPGGK	1	0	Unmodified	1245.7081	0.70812208	1679	Q8NC96	NECAP1	Adaptin ear-binding coat-associated protein 1	yes	yes	0	0	0	6	0						1											17.314	17.314	2	0.012729	10955	DP690-6	72.848	72.848			0.55181	0.61486	NaN	1	0	Median	3313600	1806800	1506700	5021	1679	4709	9973	24348	24348		1	9606
GGGNQVSLLNVVMDLK	1	0	Oxidation (M)	1658.8662	0.86615564	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	0	10	0										1							21.584	21.584	2	0.068694	18896	DP690-10	77.279	23.682			NaN	NaN	NaN	0	0	Median	14344000	0	14344000	5022	1297	4710	9974	24349	24349	1982	1	9606
GGGNQVSLLNVVMDLKK	2	0	Oxidation (M)	1786.9611	0.96111866	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	1	10	0										1							19.26	19.26	3	0.0033096	15692	DP690-10	67.685	49.294			0.79787	0.97427	NaN	1	0	Median	106930000	57291000	49641000	5023	1297	4711	9975	24350;24351;24352;24353	24350	1982	4	9606
GGGPAGAGGEAPAALR	0	1	Unmodified	1307.6582	0.65821178	1426	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	15	0															1		12.715	12.715	2	6.1315E-06	5619	DP690-15	131.42	131.42			0.69593	0.80954	NaN	1	0	Median	26308000	14573000	11735000	5024	1426	4712	9976	24354;24355	24354		2	9606
GGGQIIPTAR	0	1	Unmodified	968.54033	0.54032847	483;1314	P13639;Q15029	EEF2;EFTUD2	Elongation factor 2;116 kDa U5 small nuclear ribonucleoprotein component	no	no	0	0	0	7	4			1								1						12.831	12.831	2	0.0025519	5566	DP690-3	98.582	67.97			0.98231	1.0402	6.0521	2	0	Median	574050000	295810000	278240000	5025	483;1314	4713	9977;9978	24356;24357;24358;24359;24360;24361;24362;24363;24364	24363		9	9606
GGGSAAAAAAAAASGGAGSDNSVEHSDYR	0	1	Unmodified	2534.1018	0.10179891	704	P40424	PBX1	Pre-B-cell leukemia transcription factor 1	yes	yes	0	0	0	14	0														1			13.997	13.997	3	9.439E-11	7523	DP690-14	151.19	137.18			NaN	NaN	NaN	0	0	Median	12710000	12710000	0	5026	704	4714	9979	24365	24365		1	9606
GGGVGGFLPAMK	1	0	Unmodified	1089.5641	0.56410038	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	12	0												1					17.858	17.858	2	0.0042892	12914	DP690-12	87.476	41.524			0.63497	0.75715	NaN	1	0	Median	57384000	24967000	32416000	5027	2475	4715	9980	24366;24367	24367		2	9606
GGHFYSAKPEILR	1	1	Unmodified	1473.7728	0.7728476	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	1	10	0										1							12.773	12.773	3	0.0081808	6252	DP690-10	70.54	57.777			0.68787	0.82744	NaN	1	0	Median	150830000	103500000	47325000	5028	858	4716	9981	24368;24369	24369		2	9606
GGHMDDGGYSMNFNMSSSR	0	1	2 Oxidation (M)	2080.7673	0.76732259	692	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	2	0	13	0													1				12.444	12.444	3	0.0045183	5187	DP690-13	61.096	52.679			0.9631	1.1848	NaN	1	0	Median	16588000	8332400	8255200	5029	692	4717	9982	24370;24371	24370	1000;1001;1002	2	9606
GGHMDDGGYSMNFNMSSSR	0	1	3 Oxidation (M)	2096.7622	0.76223721	692	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	3	0	13	0													2				11.439	11.439	3	0.010056	3971	DP690-13	77.969	69.368			NaN	NaN	NaN	0	0	Median	11292000	0	11292000	5030	692	4717	9983;9984	24372;24373;24374	24374	1000;1001;1002	3	9606
GGIQELIGLIK	1	0	Unmodified	1139.6914	0.69140938	664	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	10.3	0.471										2	1						22.248	22.248	2	0.0054745	19746	DP690-10	117.81	44.563			0.79315	0.9644	NaN	1	0	Median	9354400	6572100	2782300	5031	664	4718	9985;9986;9987	24375;24376;24377	24375		3	9606
GGIVDEGALLR	0	1	Unmodified	1098.6033	0.60332266	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	4	0				1													17.106	17.106	2	9.8312E-05	11201	DP690-4	146.81	77.612			1.3259	1.3993	NaN	1	0	Median	111320000	48333000	62986000	5032	167	4719	9988	24378;24379;24380;24381	24380		4	9606
GGIVGMTLPIAR	0	1	Unmodified	1183.6747	0.67471346	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	7	0							1										18.883	18.883	2	0.064115	13290	DP690-7	57.348	34.769			0.67687	0.77714	NaN	1	0	Median	6884700	3833500	3051200	5033	1953	4720	9989	24382	24382		1	9606
GGKPEPPAMPQPVPTA	1	0	Oxidation (M)	1588.7919	0.79192806	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	1	11	4							1								1		12.782	12.782	2	0.0024776	5663	DP690-15	106.26	74.415			0.56448	0.60899	8.0561	2	0	Median	364970000	230690000	134270000	5034	569	4721	9990;9991	24383;24384;24385;24386;24387;24388;24389	24385	756	7	9606
GGKPGLTIQAPQLEVSVPSANIEGLEGK	2	0	Unmodified	2788.4971	0.49707326	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9.5	0.5									1	1							19.511	19.511	3	3.8329E-05	14278	DP690-9	97.304	85.589			0.52638	0.64409	7.5351	2	0	Median	87567000	53670000	33897000	5035	1145	4722	9992;9993	24390;24391;24392;24393;24394;24395	24392		6	9606
GGLQEVAEQLELER	0	1	Unmodified	1569.7999	0.79985021	2356	Q9UIV1	CNOT7	CCR4-NOT transcription complex subunit 7	yes	yes	0	0	0	15	0															1		20.172	20.172	2	0.0047461	15391	DP690-15	92.943	69.916			0.72979	0.84711	NaN	1	0	Median	5091100	2880000	2211100	5036	2356	4723	9994	24396;24397;24398	24396		3	9606
GGLVGTPAPFSIDTK	1	0	Unmodified	1458.7718	0.77184455	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							18.339	18.339	2	1.8182E-05	14297	DP690-10	137.01	117.02			0.71948	0.82634	14.63	3	0	Median	416100000	238450000	177650000	5037	1270	4724	9995;9996;9997	24399;24400;24401;24402;24403;24404;24405;24406;24407	24399		9	9606
GGMGSGGLATGIAGGLAGMGGIQNEK	1	0	2 Oxidation (M)	2292.0838	0.083829344	388	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	2	0	13	0													1				17.062	17.062	2	3.4065E-05	11608	DP690-13	124.91	105.23			1.0428	1.1998	NaN	1	0	Median	13512000	7343400	6168200	5038	388	4725	9998	24408;24409;24410	24408	411;412	3	9606
GGMGSGGLATGIAGGLAGMGGIQNEK	1	0	Oxidation (M)	2276.0889	0.088914722	388	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	1	0	13	0													1				19.025	19.025	2	3.0307E-05	14187	DP690-13	108.97	72.044			NaN	NaN	NaN	0	0	Median	6217900	6217900	0	5039	388	4725	9999	24411;24412	24411	411;412	2	9606
GGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR	1	1	3 Oxidation (M)	3382.5552	0.55515155	388	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	3	1	13	0													1				16.604	16.604	3	1.2656E-07	10950	DP690-13	95.108	55.602			NaN	NaN	NaN	0	0	Median	10707000	10707000	0	5040	388	4726	10000	24413;24414;24415	24413	411;412;413	3	9606
GGNFGFGDSR	0	1	Unmodified	1012.4363	0.43625733	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	14.5	0.5														1	1		14.241	14.241	2	0.00028276	7740	DP690-14	124.92	102.34			0.85505	0.96233	2.4078	2	0	Median	651900000	340150000	311750000	5041	563	4727	10001;10002	24416;24417;24418	24416		3	9606
GGNNSFTHEALTLK	1	0	Unmodified	1487.7369	0.73685603	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	12	0												1					14.249	14.249	3	0.020364	8025	DP690-12	69.258	45.743			0.77628	0.88966	NaN	1	0	Median	132070000	71259000	60814000	5042	417	4728	10003	24419	24419		1	9606
GGNQTSGIDFFITQER	0	1	Unmodified	1768.838	0.83802663	2093	Q9H0W8	SMG9	Protein SMG9	yes	yes	0	0	0	12	0												1					19.484	19.484	2	0.0059521	15223	DP690-12	74.46	47.032			1.0367	1.2633	NaN	1	0	Median	8558400	3815900	4742500	5043	2093	4729	10004	24420	24420		1	9606
GGNRFEPYANPTK	1	1	Unmodified	1449.7001	0.70007659	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	11	0											1						12.153	12.153	3	0.015699	5232	DP690-11	56.599	41.097			0.79184	0.92015	NaN	1	0	Median	109100000	60887000	48218000	5044	849	4730	10005	24421;24422	24422		2	9606
GGNRPNTGPLYTEADR	0	2	Unmodified	1716.818	0.81795989	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	1	10	0										1							12.115	12.115	3	0.007232	5316	DP690-10	66.201	44.743			1.0705	1.275	NaN	1	0	Median	129500000	68185000	61313000	5045	2155	4731	10006	24423;24424;24425	24423		3	9606
GGNVGINSFGFGGSNVHIILRPNTQPPPAPAPHATLPR	0	2	Unmodified	3857.0238	0.023757771	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2.5	0.5		1	1														17.552	17.552	5	1.2812E-06	10825	DP690-2	66.593	66.593			0.48201	0.48143	NaN	1	0	Median	18075000	11527000	6548800	5046	789	4732	10007;10008	24426;24427	24426		2	9606
GGPAEGQLQENDR	0	1	Unmodified	1369.6222	0.6222202	1132	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	10	0										1							11.073	11.073	2	2.9436E-05	3794	DP690-10	157.66	127.9			NaN	NaN	NaN	0	0	Median	25159000	25159000	0	5047	1132	4733	10009	24428;24429	24428		2	9606
GGPEVQQVPAGER	0	1	Unmodified	1322.6579	0.65787742	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															11.779	11.779	2	0.0012598	4091	DP690-2	106.2	84.751			0.65272	0.68353	NaN	1	0	Median	5723000	3275200	2447800	5048	789	4734	10010	24430;24431	24430		2	9606
GGPGAAPGGASPASSSSAASSPSSGR	0	1	Unmodified	2113.9625	0.96245188	2038	Q9BXK1	KLF16	Krueppel-like factor 16	yes	yes	0	0	0	10	4						1								1			10.706	10.706	2	2.4408E-31	3052	DP690-14	204.13	204.13			0.67034	0.78386	3.3489	2	0	Median	10541000	6361400	4179700	5049	2038	4735	10011;10012	24432;24433;24434;24435;24436;24437	24432		6	9606
GGPGSAVSPYPTFNPSSDVAALHK	1	0	Unmodified	2355.1495	0.14952437	365	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	6	0						1											17.332	17.332	3	1.3603E-15	10900	DP690-6	166.38	166.38			0.63867	0.72379	NaN	1	0	Median	20026000	12843000	7182700	5050	365	4736	10013	24438;24439;24440;24441	24440		4	9606
GGPNIITLADIVKDPVSR	1	1	Unmodified	1864.0418	0.04181182	1035	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	1	10	4						1								1			20.368	20.368	3	1.656E-06	16096	DP690-14	130.01	115.08			0.82931	0.95522	18.095	2	0	Median	97014000	55532000	41482000	5051	1035	4737	10014;10015	24442;24443;24444;24445;24446;24447;24448;24449	24443		8	9606
GGPNYQEGLR	0	1	Unmodified	1089.5203	0.52032131	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	7	4			1								1						12.432	12.432	2	0.00074084	5101	DP690-3	111.74	83.565			0.46301	0.54008	20.404	2	0	Median	90471000	55334000	35136000	5052	873	4738	10016;10017	24450;24451;24452;24453;24454	24454		5	9606
GGPPFAFVEFEDPRDAEDAVYGR	0	2	Unmodified	2540.1608	0.16081734	1136	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	1	15	0															1		21.205	21.205	3	0.00099455	16612	DP690-15	72.968	65.936			0.65957	0.7155	NaN	1	0	Median	8754800	5859600	2895200	5053	1136	4739	10018	24455;24456;24457;24458;24459;24460	24459		6	9606
GGQGDPAVPAQQPADPSTPER	0	1	Unmodified	2073.9716	0.97156	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	0	11.5	0.5											1	1					12.765	12.765	2	5.7106E-23	5843	DP690-12	199.33	174.47			0.65323	0.78799	NaN	1	0	Median	16944000	10819000	6125000	5054	144	4740	10019;10020	24461;24462;24463;24464;24465	24463		5	9606
GGQIGLQAPGLSVSGPQGHLESGSGK	1	0	Unmodified	2417.2299	0.22989995	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10	0.816									1	1	1						16.089	16.089	3	2.5919E-07	10985	DP690-11	136.77	136.77			0.63507	0.78385	11.283	3	0	Median	194030000	116840000	77183000	5055	1145	4741	10021;10022;10023	24466;24467;24468;24469;24470;24471;24472;24473;24474;24475;24476	24470		11	9606
GGQLQEQLTQQLSQALSSAVAGR	0	1	Unmodified	2369.2299	0.22989995	1491	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	10	0										1							23.708	23.708	2	2.6574E-97	21536	DP690-10	380.65	290.91			0.98097	1.2243	NaN	1	0	Median	17824000	8343400	9480400	5056	1491	4742	10024	24477;24478;24479;24480	24477		4	9606
GGSDDSSKDPIDVNYEK	2	0	Unmodified	1824.8014	0.80136636	439	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	11	0											1						13.368	13.368	3	0.047217	7033	DP690-11	46.337	29.815			0.88559	1.0168	NaN	1	0	Median	102590000	46715000	55875000	5057	439	4743	10025	24481	24481		1	9606
GGSGGGGSISGGGYGSGGGSGGR	0	1	Unmodified	1740.7412	0.74116614	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	7.2	5.1	1	2	1	1						2		2				1	10.66	10.66	2	4.8334E-70	3042	DP690-12	276.75	228.15		+	NaN	NaN	NaN	0	0	Median	69635000	69635000	0	5058	44	4744	10026;10027;10028;10029;10030;10031;10032;10033;10034;10035	24482;24483;24484;24485;24486;24487;24488;24489;24490;24491;24492;24493	24486		12	9606
GGSGGGGSISGGGYGSGGGSGGRYGSGGGSK	1	1	Unmodified	2434.0494	0.049369407	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	10.7	3.86							1		1							1	10.572	10.572	3	3.5456E-06	2883	DP690-9	93.392	72.796		+	NaN	NaN	NaN	0	0	Median	4312800	4312800	0	5059	44	4745	10036;10037;10038	24494;24495;24496	24496		3	9606
GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK	1	0	Unmodified	3222.2743	0.27429656	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	7.81	4.39	1	1	1	1	3		1	1	1	1	1	1	1	1		1	12.261	12.261	3	6.5094E-64	4861	DP690-4	215.07	212.1		+	NaN	NaN	NaN	0	0	Median	314140000	314140000	0	5060	667	4746	10039;10040;10041;10042;10043;10044;10045;10046;10047;10048;10049;10050;10051;10052;10053;10054	24497;24498;24499;24500;24501;24502;24503;24504;24505;24506;24507;24508;24509;24510;24511;24512;24513;24514;24515;24516;24517;24518;24519;24520;24521;24522;24523;24524;24525;24526;24527;24528;24529;24530;24531;24532;24533;24534;24535;24536;24537;24538	24521		42	9606
GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGKSSHS	1	0	Unmodified	3620.4293	0.42929365	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	4	0				1													11.21	11.21	4	0.0039582	3742	DP690-4	53.014	42.956		+	NaN	NaN	NaN	0	0	Median	1850900	1850900	0	5061	667	4747	10055	24539	24539		1	9606
GGSGGSYGGGGSGGGYGGGSGSR	0	1	Unmodified	1790.7204	0.72043069	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	5.75	4.76	2									1	1						10.648	10.648	2	1.13E-23	2892	DP690-11	195.5	93.344		+	NaN	NaN	NaN	0	0	Median	356790000	356790000	0	5062	667	4748	10056;10057;10058;10059	24540;24541;24542;24543;24544;24545;24546;24547	24546		8	9606
GGSGSHNWGTVKDELTESPK	2	0	Unmodified	2084.9763	0.97631103	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	13	0													2				13.798	13.798	3;4	2.7991E-05	7075	DP690-13	120.15	92.723			0.81022	0.90343	0.10015	2	0	Median	214440000	114800000	99635000	5063	1678	4749	10060;10061	24548;24549;24550;24551;24552;24553	24550		6	9606
GGSGTAGTEPSDIIIPLR	0	1	Unmodified	1739.9054	0.90537792	1066	P98172	EFNB1	Ephrin-B1	yes	yes	0	0	0	16	0																1	18.399	18.399	2	7.382E-17	12798	DP690-16	204.85	154.06			0.80314	0.93407	NaN	1	0	Median	17794000	9910000	7883800	5064	1066	4750	10062	24554;24555;24556;24557	24557		4	9606
GGSWIQEINVAEK	1	0	Unmodified	1429.7201	0.72014333	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								18.457	18.457	2	0.00010903	12952	DP690-9	170.89	94.667			0.82828	0.97363	NaN	1	0	Median	53795000	28953000	24842000	5065	1046	4751	10063	24558;24559;24560;24561	24559		4	9606
GGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTK	3	0	2 Oxidation (M)	3837.5436	0.54363921	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	2	2	10	0										1							11.426	11.426	4	4.498E-12	4370	DP690-10	133.56	133.56			0.76187	0.81709	NaN	1	0	Median	52272000	29786000	22486000	5066	1710	4752	10064	24562;24563;24564;24565;24566;24567	24564	2300;2301	6	9606
GGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTK	3	0	Oxidation (M)	3821.5487	0.54872459	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	1	2	10	0										1							12.72	12.72	4	5.3513E-10	6149	DP690-10	112.75	97.864			NaN	NaN	NaN	0	0	Median	20845000	20845000	0	5067	1710	4752	10065	24568;24569;24570	24568	2300;2301	3	9606
GGTPSAFDR	0	1	Unmodified	906.41954	0.41954463	518;415;1089	P17858;Q01813;P08237	PFKL;PFKP;PFKM	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, muscle type	no	no	0	0	0	3	0			1														11.35	11.35	2	0.011843	3858	DP690-3	87.696	52.078			0.79064	0.8619	NaN	1	0	Median	58943000	32217000	26726000	5068	518;1089;415	4753	10066	24571;24572;24573;24574	24571		4	9606
GGVILVSHDER	0	1	Unmodified	1180.62	0.62003536	2225	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	3	0			1														11.671	11.671	2	0.027973	4288	DP690-3	93.598	45.315			NaN	NaN	NaN	0	0	Median	2880200	0	2880200	5069	2225	4754	10067	24575	24575		1	9606
GGYFDEFGIIR	0	1	Unmodified	1272.6139	0.61388734	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	7.33	3.4				1		1						1					20.56	20.56	2	0.00022517	15260	DP690-4	166.52	140.47			0.91759	0.98878	3.8849	2	0	Median	135130000	75395000	59739000	5070	469	4755	10068;10069;10070	24576;24577;24578;24579;24580;24581;24582	24579		7	9606
GGYTSGTFR	0	1	Unmodified	944.43519	0.4351947	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	7	4			1								1						12.153	12.153	2	8.0807E-05	5194	DP690-11	157.33	114.85			0.83408	0.94339	NaN	1	0	Median	181070000	167720000	13348000	5071	581	4756	10071;10072	24583;24584;24585;24586;24587;24588	24583		6	9606
GHAAFTSDPKPTIEVSGK	2	0	Unmodified	1840.9319	0.93192702	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	1	5	0					1												12.362	12.362	3	4.0606E-05	4844	DP690-5	120.59	97.602			0.66674	0.65044	NaN	1	0	Median	70827000	39789000	31039000	5072	353	4757	10073	24589;24590;24591;24592	24592		4	9606
GHAAFTSDPKPTIEVSGKK	3	0	Unmodified	1969.0269	0.026890038	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	2	4	0				1													10.858	10.858	4	0.00078028	3312	DP690-4	92.633	82.493			0.76742	0.78081	NaN	1	0	Median	9689600	5451700	4237900	5073	353	4758	10074	24593	24593		1	9606
GHAGNPRDPTDEGIFISK	1	1	Unmodified	1909.9282	0.92823863	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	1	10	0										1							13.268	13.268	3	7.8437E-05	6980	DP690-10	114.01	97.657			0.66231	0.81024	NaN	1	0	Median	117510000	64548000	52962000	5074	1254	4759	10075	24594;24595;24596	24595		3	9606
GHAGSVDSIAVDGSGTK	1	0	Unmodified	1556.7431	0.74306362	2070	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	13	0													1				11.675	11.675	3	0.0001229	4209	DP690-13	108.14	92.55			1.0966	1.2673	NaN	1	0	Median	62506000	31203000	31303000	5075	2070	4760	10076	24597;24598	24597		2	9606
GHASLVQELK	1	0	Unmodified	1080.5928	0.59275797	1858	Q96GA7	SDSL	Serine dehydratase-like	yes	yes	0	0	0	6	0						1											12.328	12.328	2	0.012983	4867	DP690-6	79.489	61.264			0.82922	0.9445	NaN	1	0	Median	7642600	3656700	3985900	5076	1858	4761	10077	24599	24599		1	9606
GHAVGDIPGVR	0	1	Unmodified	1076.5727	0.57269123	972	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	16	0																2	12.162	12.162	3	0.0039929	4914	DP690-16	97.965	55.617			NaN	NaN	NaN	0	0	Median	837440	0	837440	5077	972	4762	10078;10079	24600;24601;24602	24602		3	9606
GHDEREHPFLVK	1	1	Unmodified	1462.7317	0.73171107	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	10	0										1							10.513	10.513	4	0.068101	3023	DP690-10	40.373	20.266			0.51949	0.65602	NaN	1	0	Median	73419000	54168000	19250000	5078	1046	4763	10080	24603	24603		1	9606
GHFEAFGTLTDCVVVVNPQTK	1	0	Unmodified	2318.1365	0.13651684	1186	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	14	0														1			18.552	18.552	3	1.0187E-10	13733	DP690-14	159.01	122.26			0.82566	0.99563	NaN	1	0	Median	95738000	54468000	41269000	5079	1186	4764	10081	24604;24605;24606;24607	24606		4	9606
GHFGPIHCVR	0	1	Unmodified	1178.5767	0.57673075	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	14	0														1			10.492	10.492	3	3.2233E-05	2846	DP690-14	154.12	130.36			0.94281	1.1835	NaN	1	0	Median	4559000	2876100	1682900	5080	2474	4765	10082	24608	24608		1	9606
GHFGPINSVAFHPDGK	1	0	Unmodified	1678.8216	0.82158871	1199	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	14	0														1			14.401	14.401	3	2.7649E-06	8099	DP690-14	127.29	113.42			0.7209	0.86846	NaN	1	0	Median	101980000	59182000	42796000	5081	1199	4766	10083	24609;24610;24611	24609		3	9606
GHFWVGDELYCEK	1	0	Unmodified	1638.7137	0.71367774	1885	Q96JY6	PDLIM2	PDZ and LIM domain protein 2	yes	yes	0	0	0	14	0														1			17.053	17.053	3	0.041267	11792	DP690-14	50.659	32.959			1.0304	1.2474	NaN	1	0	Median	74135000	38570000	35565000	5082	1885	4767	10084	24612	24612		1	9606
GHGECPTTENTETFIR	0	1	Unmodified	1847.8108	0.81082561	232	O60942	RNGTT	mRNA-capping enzyme;Polynucleotide 5'-triphosphatase;mRNA guanylyltransferase	yes	yes	0	0	0	12	0												2					13.357	13.357	2	0.00022526	6655	DP690-12	161.48	134.77			NaN	NaN	NaN	0	0	Median	0	0	0	5083	232	4768	10085;10086	24613;24614	24613		2	9606
GHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYK	1	0	Unmodified	3858.8265	0.82646548	2449	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	yes	yes	0	0	0	8	0								1									21.219	21.219	4	6.2702E-13	14922	DP690-8	110.47	110.47			0.6463	0.72845	NaN	1	0	Median	11200000	6812600	4387600	5084	2449	4769	10087	24615;24616;24617;24618;24619;24620;24621	24618		7	9606
GHHTFLTEEVAR	0	1	Unmodified	1395.6895	0.6895119	2062	Q9C035	TRIM5	Tripartite motif-containing protein 5	yes	yes	0	0	0	4	0				1													12.003	12.003	3	4.9151E-05	4641	DP690-4	139.31	117.55			0.83483	0.96412	NaN	1	0	Median	17894000	9450400	8443100	5085	2062	4770	10088	24622;24623;24624	24622		3	9606
GHLLYVALSPGQHR	0	1	Unmodified	1546.8368	0.83684484	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	3	0			1														13.865	13.865	3	0.0013815	7083	DP690-3	84.892	65.364			0.72714	0.7947	NaN	1	0	Median	56161000	34011000	22149000	5086	134	4771	10089	24625;24626	24626		2	9606
GHNCPKPVLNFYEANFPANVMDVIAR	1	1	Oxidation (M)	2988.4375	0.43746666	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	1	12	0												1					19.22	19.22	4	2.1155E-07	14878	DP690-12	139.46	129.31			0.63235	0.76379	NaN	1	0	Median	68457000	41658000	26798000	5087	517	4772	10090	24627;24628;24629	24628	653	3	9606
GHNGWVTQIATTPQFPDMILSASR	0	1	Oxidation (M)	2642.2911	0.29112	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	1	0	14	0														1			19.791	19.791	3	0.00042586	15377	DP690-14	89.043	73.343			0.73206	0.87457	NaN	1	0	Median	104700000	61592000	43112000	5088	1022	4773	10091	24630	24630	1551	1	9606
GHNGWVTQIATTPQFPDMILSASR	0	1	Unmodified	2626.2962	0.29620538	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	14	0														1			20.831	20.831	3	1.2336E-31	16646	DP690-14	208.72	164.3			0.87331	1.0502	NaN	1	0	Median	77075000	42659000	34415000	5089	1022	4773	10092	24631;24632;24633;24634;24635	24632		5	9606
GHNQPCLLVGSGR	0	1	Unmodified	1393.6885	0.68846605	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		2															12.259	12.259	2;3	5.6787E-05	4441	DP690-2	125.75	108.27			1.1944	1.2381	8.0694	2	0	Median	24594000	11135000	13459000	5090	602	4774	10093;10094	24636;24637;24638;24639;24640;24641;24642;24643;24644	24643		9	9606
GHQDPSQATGTTGSSVSCTEEK	1	0	Unmodified	2262.9659	0.96588228	1890	Q96KR6	FAM210B	Protein FAM210B	yes	yes	0	0	0	16	0																1	10.396	10.396	3	1.0925E-15	2868	DP690-16	174.26	154.96			0.9783	1.1456	NaN	1	0	Median	13525000	7234800	6289800	5091	1890	4775	10095	24645;24646;24647	24645		3	9606
GHQDPSQATGTTGSSVSCTEEKK	2	0	Unmodified	2391.0608	0.060845296	1890	Q96KR6	FAM210B	Protein FAM210B	yes	yes	0	0	1	16	0																1	10.217	10.217	3	3.3189E-05	2626	DP690-16	103.92	93.153			NaN	NaN	NaN	0	0	Median	1035000	1035000	0	5092	1890	4776	10096	24648	24648		1	9606
GHQFSCVCLHGDR	0	1	Unmodified	1571.6722	0.67216406	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	11	0											1						11.21	11.21	3	0.00024432	3861	DP690-11	106.32	87.491			0.88825	1.0245	NaN	1	0	Median	185160000	101880000	83275000	5093	1768	4777	10097	24649;24650;24651;24652;24653	24650		5	9606
GHQQLYWSHPR	0	1	Unmodified	1407.6796	0.67961592	974	P62273	RPS29	40S ribosomal protein S29	yes	yes	0	0	0	8	0								1									10.719	10.719	3	2.9832E-05	3344	DP690-8	159.09	130.02			0.99744	1.1085	NaN	1	0	Median	20068000	10309000	9758400	5094	974	4778	10098	24654;24655;24656;24657	24655		4	9606
GHSLSDGLEEVQK	1	0	Unmodified	1397.6787	0.67867245	255	O75431	MTX2	Metaxin-2	yes	yes	0	0	0	15	0															1		13.439	13.439	2	2.3706E-08	6627	DP690-15	205.13	186.6			0.96638	1.1399	NaN	1	0	Median	18652000	10338000	8313800	5095	255	4779	10099	24658;24659;24660;24661;24662	24660		5	9606
GHSLSDGLEEVQKAEMK	2	0	Oxidation (M)	1872.8887	0.88874158	255	O75431	MTX2	Metaxin-2	yes	yes	0	1	1	15	0															1		14.586	14.586	3	9.6115E-05	8218	DP690-15	112.03	91.508			0.66515	0.76147	NaN	1	0	Median	28727000	15986000	12741000	5096	255	4780	10100	24663;24664;24665	24663	259	3	9606
GHTDYIHCLALR	0	1	Unmodified	1454.7089	0.70886714	1580	Q86W42	THOC6	THO complex subunit 6 homolog	yes	yes	0	0	0	14	0														1			14.346	14.346	3	0.00056198	8029	DP690-14	97.452	68.646			0.84612	1.0249	NaN	1	0	Median	41121000	23904000	17217000	5097	1580	4781	10101	24666;24667;24668	24666		3	9606
GHTEVIVPHLTESYNSHR	0	1	Unmodified	2075.0185	0.018450616	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														13.075	13.075	4	9.3553E-07	6115	DP690-3	132.25	113.78			0.79971	0.9012	NaN	1	0	Median	31386000	17266000	14120000	5098	5	4782	10102	24669;24670;24671;24672	24671		4	9606
GHTEVIVPHLTESYNSHRDPPEEEIPFCTLK	1	1	Unmodified	3630.7413	0.74129606	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	1	3	0			1														16.633	16.633	5	0.0083926	10855	DP690-3	40.414	31.348			0.50792	0.56332	NaN	1	0	Median	56943000	35226000	21717000	5099	5	4783	10103	24673	24673		1	9606
GHVDILAPTVQELAALEK	1	0	Unmodified	1903.0415	0.041477469	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	7.67	3.4			1						1		1						20.352	20.352	3	4.5862E-14	17046	DP690-11	193.3	193.3			0.80513	0.89056	5.5541	3	0	Plateau	302700000	172130000	130570000	5100	1768	4784	10104;10105;10106	24674;24675;24676;24677;24678;24679;24680;24681;24682	24675		9	9606
GHVFEESQVAGTPMFVVK	1	0	Unmodified	1960.9717	0.97168334	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	8.33	3.77			1								2						17.4	17.4	2;3	5.0693E-31	12902	DP690-11	254.1	209.49			0.93276	1.0166	14.3	3	0	Median	411160000	211550000	199610000	5101	483	4785	10107;10108;10109	24683;24684;24685;24686;24687;24688;24689;24690;24691	24684		9	9606
GHVFEESQVAGTPMFVVK	1	0	Oxidation (M)	1976.9666	0.96659797	483	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	3	0			2														16.146	16.146	2;3	5.628E-13	10208	DP690-3	188.92	164.42			0.92019	0.95956	10.513	2	0	Median	169060000	83206000	85855000	5102	483	4785	10110;10111	24692;24693;24694;24695;24696;24697;24698	24696	598	7	9606
GHVLGNGSQVTQAANSGCSK	1	0	Unmodified	1970.9228	0.92283567	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	11	0											1						10.856	10.856	3	0.0026528	3449	DP690-11	67.655	58.084			0.83262	1.0153	NaN	1	0	Median	30095000	16967000	13128000	5103	1573	4786	10112	24699;24700	24700		2	9606
GHVSLAAELSK	1	0	Unmodified	1110.6033	0.60332266	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9	0									1								12.947	12.947	2	0.0004849	5802	DP690-9	144.65	82.068			NaN	NaN	NaN	0	0	Median	12021000	0	12021000	5104	808	4787	10113	24701;24702	24701		2	9606
GHVTQDAPIPGSPLYTIK	1	0	Unmodified	1892.9996	0.99961265	1314	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	11	0											1						16.051	16.051	3	0.081167	10975	DP690-11	29.027	5.3439			0.71817	0.87182	NaN	1	0	Median	78734000	41727000	37007000	5105	1314	4788	10114	24703	24703		1	9606
GHYTEGAELVDAVLDVVR	0	1	Unmodified	1941.9796	0.97960549	370;2010	P04350;Q9BUF5	TUBB4A;TUBB6	Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	0	10.3	3.77					1								2				22.733	22.733	2;3	9.015899999999999E-21	18749	DP690-13	217.12	172.29			0.99979	1.1254	1.6014	2	0	Median	83079000	41277000	41802000	5106	370;2010	4789	10115;10116;10117	24704;24705;24706;24707;24708;24709;24710;24711;24712;24713;24714;24715	24710		12	9606
GHYTEGAELVDSVLDVVR	0	1	Unmodified	1957.9745	0.97452012	1034;406;2017;1217	P07437;P68371;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	8.29	4.16	1	1			23	2	1	1	1		1	1	13	2		2	24.057	24.057	2;3	3.5128E-152	17299	DP690-13	441	360.99			1.0373	1.0994	17.406	33	0	Median	6785699999.999999	3393499999.9999995	3392299999.9999995	5107	406;1034;2017;1217	4790	10118;10119;10120;10121;10122;10123;10124;10125;10126;10127;10128;10129;10130;10131;10132;10133;10134;10135;10136;10137;10138;10139;10140;10141;10142;10143;10144;10145;10146;10147;10148;10149;10150;10151;10152;10153;10154;10155;10156;10157;10158;10159;10160;10161;10162;10163;10164;10165;10166	24716;24717;24718;24719;24720;24721;24722;24723;24724;24725;24726;24727;24728;24729;24730;24731;24732;24733;24734;24735;24736;24737;24738;24739;24740;24741;24742;24743;24744;24745;24746;24747;24748;24749;24750;24751;24752;24753;24754;24755;24756;24757;24758;24759;24760;24761;24762;24763;24764;24765;24766;24767;24768;24769;24770;24771;24772;24773;24774;24775;24776;24777;24778;24779;24780;24781;24782;24783;24784;24785;24786;24787;24788;24789;24790;24791;24792;24793;24794;24795;24796;24797;24798;24799;24800;24801;24802;24803;24804;24805;24806;24807;24808;24809;24810;24811;24812;24813;24814;24815;24816;24817;24818;24819;24820;24821;24822;24823;24824;24825;24826;24827;24828;24829;24830;24831;24832;24833;24834;24835;24836;24837;24838;24839;24840;24841;24842;24843;24844;24845;24846;24847	24732		131	9606
GHYTEGAELVDSVLDVVRK	1	1	Unmodified	2086.0695	0.069483134	1034;406;2017;1217	P07437;P68371;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	1	14.4	1.36													2	1		2	20.152	20.152	3;4	1.3044E-23	15561	DP690-13	227.41	227.41			1.0096	1.1331	42.582	5	0	Median	621150000	306730000	314430000	5108	406;1034;2017;1217	4791	10167;10168;10169;10170;10171	24848;24849;24850;24851;24852;24853;24854;24855;24856;24857;24858;24859;24860;24861	24851		14	9606
GHYTIGKEIIDLVLDR	1	1	Unmodified	1841.0047	0.0046980325	1032;1521;1977	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	9	4					1								1				20.933	20.933	3	2.9256E-06	15502	DP690-5	128.64	108.55			1.2105	1.3909	8.944	2	0	Median	40967000	16800000	24167000	5109	1032;1521;1977	4792	10172;10173	24862;24863;24864;24865	24864		4	9606
GIAVIVTGQGEQCER	0	1	Unmodified	1615.7988	0.79880436	2317	Q9UBP0	SPAST	Spastin	yes	yes	0	0	0	12	0												1					15.095	15.095	2	4.541E-12	9131	DP690-12	213.35	185.17			0.90062	1.0772	NaN	1	0	Median	27961000	14170000	13791000	5110	2317	4793	10174	24866;24867;24868;24869	24867		4	9606
GIAYIEFK	1	0	Unmodified	939.50657	0.50656873	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11	0											1						17.315	17.315	1	0.00099962	12698	DP690-11	134.06	64.881			NaN	NaN	NaN	0	0	Median	9204500	9204500	0	5111	534	4794	10175	24870	24870		1	9606
GICECGVCK	1	0	Unmodified	1081.4355	0.43547075	387	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	3	0			1														10.794	10.794	2	0.0098049	3201	DP690-3	89.752	77.797			1.1948	1.2759	NaN	1	0	Median	13599000	5964800	7634200	5112	387	4795	10176	24871;24872	24871		2	9606
GICSSDILVQDR	0	1	Unmodified	1361.6609	0.66091389	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								15.82	15.82	2	0.021309	9658	DP690-9	70.942	36.139			0.88792	1.1127	NaN	1	0	Median	7455800	4613500	2842300	5113	1453	4796	10177	24873;24874	24873		2	9606
GIDFKEDGNILGHK	2	0	Unmodified	1541.7838	0.78380622	57	CON__Q9U6Y5			yes	yes	0	0	1	6.81	2.39	1	1	2		20	15	34	9	1			2	2	1	1	1	21.353	21.353	2;3;4	1.2543E-45	7842	DP690-6	259.18	180.92		+	0.10171	0.11391	237.89	18	0	Median	304820000000	182970000000	121850000000	5114	57	4797	10178;10179;10180;10181;10182;10183;10184;10185;10186;10187;10188;10189;10190;10191;10192;10193;10194;10195;10196;10197;10198;10199;10200;10201;10202;10203;10204;10205;10206;10207;10208;10209;10210;10211;10212;10213;10214;10215;10216;10217;10218;10219;10220;10221;10222;10223;10224;10225;10226;10227;10228;10229;10230;10231;10232;10233;10234;10235;10236;10237;10238;10239;10240;10241;10242;10243;10244;10245;10246;10247;10248;10249;10250;10251;10252;10253;10254;10255;10256;10257;10258;10259;10260;10261;10262;10263;10264;10265;10266;10267	24875;24876;24877;24878;24879;24880;24881;24882;24883;24884;24885;24886;24887;24888;24889;24890;24891;24892;24893;24894;24895;24896;24897;24898;24899;24900;24901;24902;24903;24904;24905;24906;24907;24908;24909;24910;24911;24912;24913;24914;24915;24916;24917;24918;24919;24920;24921;24922;24923;24924;24925;24926;24927;24928;24929;24930;24931;24932;24933;24934;24935;24936;24937;24938;24939;24940;24941;24942;24943;24944;24945;24946;24947;24948;24949;24950;24951;24952;24953;24954;24955;24956;24957;24958;24959;24960;24961;24962;24963;24964;24965;24966;24967;24968;24969;24970;24971;24972;24973;24974;24975;24976;24977;24978;24979;24980;24981;24982;24983;24984;24985;24986;24987;24988;24989;24990;24991;24992;24993;24994;24995;24996;24997;24998;24999;25000;25001;25002;25003;25004;25005;25006;25007;25008;25009;25010;25011;25012;25013;25014;25015;25016;25017;25018;25019;25020;25021;25022;25023;25024;25025;25026;25027;25028;25029;25030;25031;25032;25033;25034;25035;25036;25037;25038;25039;25040;25041;25042;25043;25044;25045;25046;25047;25048;25049;25050;25051;25052;25053;25054;25055;25056;25057;25058;25059;25060;25061;25062;25063;25064;25065;25066;25067;25068;25069;25070;25071;25072	24947		196	
GIDFKEDGNILGHKLEYNYNSHNVYIMADK	3	0	Unmodified	3496.6722	0.67215387	57	CON__Q9U6Y5			yes	yes	0	0	2	5	0					1												17.843	17.843	5	0.0045676	11651	DP690-5	65.171	39.895		+	NaN	NaN	NaN	0	0	Median	59460000	0	59460000	5115	57	4798	10268	25073;25074	25073		2	
GIDFKEDGNILGHKLEYNYNSHNVYIMADK	3	0	Oxidation (M)	3512.6671	0.66706849	57	CON__Q9U6Y5			yes	yes	0	1	2	7	0							1										17.27	17.27	5	0.013817	11144	DP690-7	44.529	44.529		+	0.040748	0.04479	NaN	1	0	Median	370050000	354510000	15543000	5116	57	4798	10269	25075;25076	25076	61	2	
GIDIHGVPYVINVTLPDEK	1	0	Unmodified	2078.1048	0.10480601	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	7	4			1								1						20.132	20.132	3	2.6089E-07	16757	DP690-11	135.29	135.29			0.68057	0.7309	0.76852	2	0	Median	364070000	213370000	150700000	5117	1768	4799	10270;10271	25077;25078;25079;25080;25081;25082;25083;25084	25077		8	9606
GIDIHGVPYVINVTLPDEKQNYVHR	1	1	Unmodified	2875.4981	0.49807631	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	1	11	0											1						18.255	18.255	4	4.054E-05	14117	DP690-11	119.16	107.3			0.79979	0.93915	NaN	1	0	Median	93968000	53871000	40096000	5118	1768	4800	10272	25085;25086;25087;25088	25085		4	9606
GIDPFSLDALSK	1	0	Unmodified	1261.6554	0.65541781	702	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	8	4				1								1					20.703	20.703	2	4.7378E-05	16735	DP690-12	130.98	19.926			1.0951	1.2373	27.907	2	0	Median	96093000	43660000	52433000	5119	702	4801	10273;10274	25089;25090;25091;25092;25093;25094;25095;25096;25097;25098	25091		10	9606
GIDYDFPSLILQK	1	0	Unmodified	1507.7922	0.79224564	2052	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	14	0														1			21.612	21.612	2	0.0014817	17685	DP690-14	97.472	69.607			0.92197	1.0862	NaN	1	0	Median	6272100	2868100	3404000	5120	2052	4802	10275	25099;25100;25101	25100		3	9606
GIEAQFLALQK	1	0	Unmodified	1216.6816	0.68157298	2156	Q9HAU4;Q9HCE7	SMURF2;SMURF1	E3 ubiquitin-protein ligase SMURF2;E3 ubiquitin-protein ligase SMURF1	yes	no	0	0	0	11	0											2						18.796	18.796	2	0.0020165	14908	DP690-11	133.86	71.398			NaN	NaN	NaN	0	0	Median	0	0	0	5121	2156	4803	10276;10277	25102;25103	25103		2	9606
GIEDDLMDLIK	1	0	Oxidation (M)	1276.6221	0.62206877	1981	Q9BRF8	CPPED1	Serine/threonine-protein phosphatase CPPED1	yes	yes	0	1	0	6	0						1											21.764	21.764	2	0.0022309	15959	DP690-6	103.7	81.614			0.82935	0.94251	NaN	1	0	Median	6907900	3836200	3071700	5122	1981	4804	10278	25104;25105;25106;25107	25104	2524	4	9606
GIEILTDMSRPVELSDR	0	2	Oxidation (M)	1945.9779	0.97789093	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	1	1	4	0				1													17.001	17.001	3	0.0052282	11113	DP690-4	67.102	47.209			1.8681	1.9574	NaN	1	0	Median	28716000	9212000	19504000	5123	827	4805	10279	25108;25109;25110;25111	25108	1248	4	9606
GIEKPPFELPDFIK	2	0	Unmodified	1628.8814	0.881395	1210	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	1	11	0											1						20.108	20.108	3	9.7718E-05	16689	DP690-11	109.95	73.954			1.6097	1.923	NaN	1	0	Median	32012000	13700000	18312000	5124	1210	4806	10280	25112;25113	25112		2	9606
GIEPTGNMVK	1	0	Oxidation (M)	1060.5223	0.52229515	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	10	0										1							10.7	10.7	2	0.018138	3311	DP690-10	98.629	35.912			NaN	NaN	NaN	0	0	Median	250040000	250040000	0	5125	250	4807	10281	25114;25115	25115	241	2	9606
GIEQAVQSHAVAEEEAR	0	1	Unmodified	1822.881	0.88095408	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	11	0											3						14.44	14.44	2;3	7.7254E-08	8603	DP690-11	156.72	135.47			0.76875	0.85232	NaN	1	0	Median	308610000	162930000	145690000	5126	1375	4808	10282;10283;10284	25116;25117;25118;25119;25120	25118		5	9606
GIFEALRPLETLPVEGLIR	0	2	Unmodified	2122.215	0.21502516	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								23.411	23.411	3	7.9645E-05	18737	DP690-9	110.74	94.248			0.74386	0.80631	NaN	1	0	Median	21816000	12381000	9434900	5127	1264	4809	10285	25121;25122;25123;25124;25125	25121		5	9606
GIFNGFSVTLK	1	0	Unmodified	1181.6445	0.64445919	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	11	2.16									1	1				1			20.184	20.184	2	0.00010905	17027	DP690-10	126.07	85.289			0.7605	0.93934	0.35542	3	0	Plateau	229860000	126300000	103560000	5128	1070	4810	10286;10287;10288	25126;25127;25128;25129;25130;25131;25132;25133;25134;25135;25136;25137	25128		12	9606
GIFNGFSVTLKEDGVR	1	1	Unmodified	1737.905	0.90498399	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	11	2.16									1	1				1			18.798	18.798	3	2.0121E-07	13374	DP690-9	159.18	129.44			0.60721	0.70425	21.143	3	0	Median	297040000	167090000	129950000	5129	1070	4811	10289;10290;10291	25138;25139;25140;25141	25140		4	9606
GIFTSEIGTK	1	0	Unmodified	1051.555	0.55497548	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7.17	3.67		2							1	3							16.028	16.028	2	3.9454E-10	10974	DP690-10	180.03	119.91			0.85986	0.90217	NaN	1	0	Median	635840000	505420000	130420000	5130	1046	4812	10292;10293;10294;10295;10296;10297	25142;25143;25144;25145;25146;25147;25148;25149;25150;25151	25142		10	9606
GIGAGGSITGLK	1	0	Unmodified	1029.5819	0.58185893	1767	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	0	0	0	13	0													1				14.44	14.44	2	0.0086506	7979	DP690-13	76.282	45.208			0.6139	0.7106	NaN	1	0	Median	46453000	26632000	19822000	5131	1767	4813	10298	25152;25153	25152		2	9606
GIGFGDIFK	1	0	Unmodified	952.50182	0.5018177	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	11	0											1						20.251	20.251	2	0.072064	16959	DP690-11	60.59	23.829			0.93042	1.0842	NaN	1	0	Median	140190000	73474000	66721000	5132	2501	4814	10299	25154	25154		1	9606
GIGGIFFDDLDSPSKEEVFR	1	1	Unmodified	2227.0797	0.079713469	680	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	1	6	0						1											20.906	20.906	3	1.3998999999999998E-23	15064	DP690-6	222.64	203.34			0.83467	0.93542	NaN	1	0	Median	10370000	5628400	4742000	5133	680	4815	10300	25155;25156;25157	25156		3	9606
GIGMGNIGPAGMGMEGIGFGINK	1	0	Unmodified	2177.0432	0.043150503	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11	0											1						21.514	21.514	2	0.00023984	18628	DP690-11	141.82	117.4			0.61719	0.74957	NaN	1	0	Median	39441000	22996000	16445000	5134	849	4816	10301	25158;25159;25160;25161;25162;25163	25159		6	9606
GIGMGNIGPAGMGMEGIGFGINK	1	0	3 Oxidation (M)	2225.0279	0.027894369	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	3	0	11	0											1						17.65	17.65	2	2.549E-07	13263	DP690-11	127.57	97.463			NaN	NaN	NaN	0	0	Median	25255000	25255000	0	5135	849	4816	10302	25164;25165	25164	1278;1279;1280	2	9606
GIGMGNIGPAGMGMEGIGFGINK	1	0	Oxidation (M)	2193.0381	0.038065125	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	11	0											1						20.407	20.407	2	2.0508E-08	17199	DP690-11	142.54	105.29			NaN	NaN	NaN	0	0	Median	16142000	16142000	0	5136	849	4816	10303	25166;25167	25167	1278;1279;1280	2	9606
GIGMGNIGPAGMGMEGIGFGINK	1	0	2 Oxidation (M)	2209.033	0.032979747	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	11	0											1						19.042	19.042	2	0.0013884	15236	DP690-11	140.27	104.62			NaN	NaN	NaN	0	0	Median	0	0	0	5137	849	4816	10304	25168	25168	1278;1279;1280	1	9606
GIGMNEPLVDCEGYPR	0	1	Oxidation (M)	1821.8026	0.80256911	74	O00233	PSMD9	26S proteasome non-ATPase regulatory subunit 9	yes	yes	0	1	0	7	0							1										16.125	16.125	2	0.0038782	9711	DP690-7	134.98	103.38			NaN	NaN	NaN	0	0	Median	0	0	0	5138	74	4817	10305	25169	25169	81	1	9606
GIGTLHLKPTANQK	2	0	Unmodified	1476.8413	0.84126152	2379	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	1	12	0												1					11.066	11.066	3	0.012714	3573	DP690-12	63.727	39.771			0.74271	0.84681	NaN	1	0	Median	76565000	42785000	33780000	5139	2379	4818	10306	25170;25171	25171		2	9606
GIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK	1	1	Unmodified	3662.8589	0.85890878	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	11	0											1						24.609	24.609	4	2.6413E-05	22423	DP690-11	75.018	49.024			NaN	NaN	NaN	0	0	Median	3504100	3504100	0	5140	849	4819	10307	25172	25172		1	9606
GIHEYDFEIK	1	0	Unmodified	1249.5979	0.59790293	1273	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	14	0														1			15.376	15.376	3	0.0026266	9420	DP690-14	86.882	59.91			0.88545	1.0684	NaN	1	0	Median	91886000	48284000	43602000	5141	1273	4820	10308	25173;25174	25174		2	9606
GIHHGPSVAQPIHLDSTQLSR	0	1	Unmodified	2249.1665	0.16651184	1676	Q8NBT2	SPC24	Kinetochore protein Spc24	yes	yes	0	0	0	7	0							1										13.19	13.19	4	0.049592	6167	DP690-7	35.736	24.898			0.52606	0.60701	NaN	1	0	Median	15798000	9103200	6695200	5142	1676	4821	10309	25175	25175		1	9606
GIHPTIISESFQK	1	0	Unmodified	1455.7722	0.7721789	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	4	0				1													14.876	14.876	2	2.9915E-08	8320	DP690-4	202.96	172.39			1.4437	1.5579	NaN	1	0	Median	32105000	14933000	17172000	5143	827	4822	10310	25176;25177;25178	25176		3	9606
GIHQSTIDLK	1	0	Unmodified	1110.6033	0.60332266	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	10.6	1.36									2		1	2					11.452	11.452	2;3	6.3906E-05	4088	DP690-12	107.55	72.376			1.354	1.6813	21.266	4	0	Median	164950000	82501000	82448000	5144	1269	4823	10311;10312;10313;10314;10315	25179;25180;25181;25182;25183;25184;25185;25186;25187;25188;25189;25190;25191;25192;25193;25194	25188		16	9606
GIHQSTIDLKNELK	2	0	Unmodified	1594.8679	0.8678702	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	1	11.5	0.5											1	1					13.35	13.35	3	8.5849E-06	6641	DP690-12	127.03	89.371			0.96395	1.0937	0.51816	2	0	Median	243870000	126890000	116980000	5145	1269	4824	10316;10317	25195;25196;25197;25198;25199	25197		5	9606
GIHYWEVELQK	1	0	Unmodified	1400.7089	0.70885036	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	10.5	1.5									1			1					16.445	16.445	3	8.1165E-05	11074	DP690-12	157.75	117.13			1.1639	1.3888	8.1814	2	0	Median	205500000	99729000	105770000	5146	1269	4825	10318;10319	25200;25201;25202;25203;25204;25205;25206	25202		7	9606
GIIASSVGTILK	1	0	Unmodified	1157.702	0.70197407	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	5.5	1.5				1			1										18.621	18.621	2	4.6519E-05	13022	DP690-4	148.94	78.128			0.86407	0.91155	8.2299	2	0	Median	264600000	137010000	127580000	5147	516	4826	10320;10321	25207;25208;25209;25210;25211;25212;25213	25208		7	9606
GIIELLGSK	1	0	Unmodified	928.55933	0.55933258	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		2															18.959	18.959	2	0.032576	12377	DP690-2	114.5	43.155			NaN	NaN	NaN	0	0	Median	0	0	0	5148	2418	4827	10322;10323	25214;25215	25215		2	9606
GIIIMGEDDDSHPSEMR	0	1	2 Oxidation (M)	1932.8193	0.81934138	2072	Q9GZP4	PITHD1	PITH domain-containing protein 1	yes	yes	0	2	0	7	0							1										12.905	12.905	3	0.00094274	5778	DP690-7	78.069	47.741			0.7936	0.89945	NaN	1	0	Median	25644000	14783000	10861000	5149	2072	4828	10324	25216	25216	2593;2594	1	9606
GIIRPGTAFELLEAQAATGYVIDPIK	1	1	Unmodified	2742.4956	0.4956167	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.75	0.829									2	1	1						22.63	22.63	3	4.8122E-16	20223	DP690-10	168.06	149.97			0.71314	0.85212	16.121	4	0	Median	212400000	124810000	87590000	5150	1319	4829	10325;10326;10327;10328	25217;25218;25219;25220;25221;25222;25223;25224;25225;25226	25219		10	9606
GIISILDEECLRPGEATDLTFLEK	1	1	Unmodified	2718.3786	0.37859761	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	1	11	0											1						22.184	22.184	3	0.019633	19487	DP690-11	71.853	43.46			NaN	NaN	NaN	0	0	Median	8472000	8472000	0	5151	65	4830	10329	25227	25227		1	9606
GILAADESTGSIAK	1	0	Unmodified	1331.6933	0.69325988	363	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	6	0						1											14.723	14.723	2	0.00013526	7787	DP690-6	120.86	77.548			1.3371	1.5005	NaN	1	0	Median	27464000	12203000	15261000	5152	363	4831	10330	25228;25229	25229		2	9606
GILADEDSSRPVWLK	1	1	Unmodified	1684.8784	0.87843489	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		2															17.309	17.309	2;3	1.2183E-06	10500	DP690-2	179.6	133.25			0.75611	0.74432	5.7424	2	0	Median	56280000	30509000	25770000	5153	789	4832	10331;10332	25230;25231;25232;25233;25234;25235;25236;25237;25238;25239	25237		10	9606
GILDYLDNISPQQIR	0	1	Unmodified	1743.9155	0.91554867	2042	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	yes	yes	0	0	0	10	0										1							22.708	22.708	2	0.00015887	20379	DP690-10	119.74	119.74			1.1543	1.442	NaN	1	0	Median	16794000	8071500	8722800	5154	2042	4833	10333	25240;25241	25241		2	9606
GILLFGTK	1	0	Unmodified	847.51674	0.51673948	800	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1													18.405	18.405	2	0.050947	12708	DP690-4	111.65	64.985			0.77334	0.84852	NaN	1	0	Median	13647000	7322700	6324200	5155	800	4834	10334	25242	25242		0	9606
GILLQLFGGTR	0	1	Unmodified	1173.687	0.68699271	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	7.67	3.4			1						1		1						21.805	21.805	2	0.0020503	18983	DP690-11	134.77	89.607			0.4626	0.56785	NaN	1	0	Median	18674000	1477300	17196000	5156	651	4835	10335;10336;10337	25243;25244;25245;25246;25247	25244		5	9606
GILQELFLNK	1	0	Unmodified	1173.6758	0.67575932	1914	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	11	0											1						22.139	22.139	2	0.025424	19433	DP690-11	95.909	39.788			NaN	NaN	NaN	0	0	Median	0	0	0	5157	1914	4836	10338	25248	25248		1	9606
GILSMANSGPNSNR	0	1	Oxidation (M)	1432.6729	0.67287556	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	1	0	10.5	1.5									1			1					12.452	12.452	2	3.4853E-05	5393	DP690-12	175.49	145.82			0.65512	0.79394	20.299	2	0	Median	98631000	58563000	40068000	5158	1200	4837	10339;10340	25249;25250;25251;25252;25253;25254;25255	25252	1854	7	9606
GIMTTGSGQEPGQSGTSLR	0	1	Oxidation (M)	1878.8742	0.87415414	1402	Q53GL7	PARP10	Poly [ADP-ribose] polymerase 10	yes	yes	0	1	0	3	0			1														12.423	12.423	2	2.6909E-17	5194	DP690-3	210.14	164.71			0.97216	1.0758	NaN	1	0	Median	5044300	2925300	2119000	5159	1402	4838	10341	25256;25257;25258;25259;25260;25261	25257	2138	6	9606
GINSSNVENQLQATQAAR	0	1	Unmodified	1899.9399	0.93986594	850	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	10.5	3.77				1								1	2				15.116	15.116	2	2.5901E-37	9190	DP690-12	294.83	211.7			0.96618	1.106	26.56	2	0	Median	163320000	88925000	74398000	5160	850	4839	10342;10343;10344;10345	25262;25263;25264;25265;25266;25267;25268;25269;25270;25271;25272;25273	25265		12	9606
GIPAPEEER	0	1	Unmodified	996.48762	0.4876242	324	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	6	0						1											11.702	11.702	2	0.0024426	4232	DP690-6	110.12	92.755			0.91226	1.0482	NaN	1	0	Median	11449000	5325900	6123000	5161	324	4840	10346	25274;25275;25276	25276		3	9606
GIPDDRDGLFDTIQR	0	2	Unmodified	1716.8431	0.84311201	1803;93	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	no	no	0	0	1	2	0		1															17.276	17.276	3	0.05011	10399	DP690-2	49.482	32.486			1.2051	1.2037	NaN	1	0	Median	4136600	1999300	2137300	5162	1803;93	4841	10347	25277;25278	25278		2	9606
GIPEFWLTVFK	1	0	Unmodified	1335.7227	0.72270951	896	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	5	0					1												24.076	24.076	2	0.0011834	19322	DP690-5	105.1	68.655			0.94633	0.9472	NaN	1	0	Median	14243000	7148300	7095100	5163	896	4842	10348	25279;25280;25281;25282	25282		4	9606
GIPGLPDGR	0	1	Unmodified	880.47667	0.47666558	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															15.518	15.518	2	0.077754	8253	DP690-2	58.815	24.726			1.0431	1.091	NaN	1	0	Median	8478300	3705300	4773000	5164	602	4843	10349	25283;25284	25284		2	9606
GIPHLVTHDAR	0	1	Unmodified	1214.652	0.65200419	986	P62701;P22090;Q8TD47	RPS4X;RPS4Y1;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	14.3	2.19									1						5	1	10.758	10.758	3	4.6847E-05	3101	DP690-9	121.5	101.37			0.90502	1.017	21.314	2	0	Median	820270000	305190000	515080000	5165	986	4844	10350;10351;10352;10353;10354;10355;10356	25285;25286;25287;25288;25289;25290;25291;25292;25293;25294;25295;25296	25295		12	9606
GIPLESTDGER	0	1	Unmodified	1172.5673	0.56733108	423	P08651;O00712;Q14938;Q12857	NFIC;NFIB;NFIX;NFIA	Nuclear factor 1 C-type;Nuclear factor 1 B-type;Nuclear factor 1 X-type;Nuclear factor 1 A-type	yes	no	0	0	0	12.5	0.5												1	1				13.517	13.517	2	8.4468E-05	6891	DP690-12	129.42	90.399			0.67162	0.78004	10.886	2	0	Median	279000000	162750000	116250000	5166	423	4845	10357;10358	25297;25298;25299;25300;25301;25302;25303;25304;25305	25299		9	9606
GIPVLVGLLDHPK	1	0	Unmodified	1356.8129	0.8129215	216	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	11	0											1						19.606	19.606	3	0.083113	16145	DP690-11	37.525	26.312			0.68671	0.84344	NaN	1	0	Median	20282000	11631000	8651300	5167	216	4846	10359	25306	25306		1	9606
GIPVMGHSEGICHMYVDSEASVDK	1	0	Oxidation (M)	2633.156	0.15600801	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	1	0	11	0											1						14.74	14.74	4	0.0012749	9035	DP690-11	63.883	57.624			0.71197	0.85174	NaN	1	0	Median	99658000	60593000	39065000	5168	891	4847	10360	25307;25308	25307	1353	2	9606
GIQEEMEALVK	1	0	Unmodified	1245.6275	0.6274885	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	4	0				1													20.143	20.143	2	0.00097769	14831	DP690-4	106.88	59.306			0.80498	0.86381	NaN	1	0	Median	4682800	2654000	2028800	5169	1359	4848	10361	25309	25309		1	9606
GIQQATTGVSQETSENPGNK	1	0	Unmodified	2044.9661	0.96614027	366	P04150	NR3C1	Glucocorticoid receptor	yes	yes	0	0	0	3	0			1														12.774	12.774	2	0.0035769	5662	DP690-3	123.29	83.373			NaN	NaN	NaN	0	0	Median	0	0	0	5170	366	4849	10362	25310	25310		1	9606
GIRPAINVGLSVSR	0	2	Unmodified	1437.8416	0.84159587	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	13	0													1				15.316	15.316	3	0.0091248	9217	DP690-13	68.033	54.287			0.73688	0.84609	NaN	1	0	Median	163950000	91402000	72549000	5171	585	4850	10363	25311;25312	25312		2	9606
GISCMNTTLSESPFK	1	0	Oxidation (M)	1686.7593	0.75930731	1320	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	1	0	6	0						1											16.021	16.021	2	1.7012E-06	9314	DP690-6	184.24	154.03			0.77773	0.88804	NaN	1	0	Median	8531700	4461800	4070000	5172	1320	4851	10364	25313;25314;25315;25316	25314	2038	4	9606
GISDLAQHYLMR	0	1	Unmodified	1402.7027	0.70271913	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	12	0												1					18.391	18.391	3	0.0029444	13755	DP690-12	76.332	54.011			0.92473	1.1042	NaN	1	0	Median	30096000	14896000	15200000	5173	791	4852	10365	25317;25318;25319	25318		3	9606
GISDLAQHYLMR	0	1	Oxidation (M)	1418.6976	0.69763375	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	4	0				1													17.499	17.499	3	0.002602	11701	DP690-4	82.417	55.268			1.504	1.659	NaN	1	0	Median	45412000	18301000	27111000	5174	791	4852	10366	25320;25321	25320	1193	2	9606
GISDPLTVFEQTEAAAR	0	1	Unmodified	1803.9003	0.90029254	61	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	9.33	3.77				1								2					21.735	21.735	2	2.778E-10	18067	DP690-12	235.31	202.31			0.13613	0.16412	NaN	1	0	Median	17846000	13111000	4735100	5175	61	4853	10367;10368;10369	25322;25323;25324	25322		3	9606
GISEDSHLESLQDVGQSAAPTFMISPETVTGTGK	1	0	Oxidation (M)	3504.6566	0.65662296	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	0	10.7	0.471										1	2						19.492	19.492	3	1.0636E-15	16040	DP690-10	147.54	147.54			0.81802	1.0016	NaN	1	0	Median	199430000	120410000	79019000	5176	604	4854	10370;10371;10372	25325;25326;25327;25328;25329;25330	25325	837	6	9606
GISEDSHLESLQDVGQSAAPTFMISPETVTGTGK	1	0	Unmodified	3488.6617	0.66170834	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10.5	0.5										1	1						20.263	20.263	3	1.6E-09	16987	DP690-11	123.09	123.09			0.69085	0.84568	15.566	2	0	Median	192520000	120670000	71846000	5177	604	4854	10373;10374	25331;25332;25333;25334;25335;25336;25337;25338	25336		8	9606
GISEDSHLESLQDVGQSAAPTFMISPETVTGTGKK	2	0	Oxidation (M)	3632.7516	0.75158598	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	1	10	0										1							18.372	18.372	4	3.2606E-06	14430	DP690-10	69.162	61.007			0.63324	0.72332	NaN	1	0	Median	256040000	147110000	108930000	5178	604	4855	10375	25339;25340	25340	837	2	9606
GISEDSHLESLQDVGQSAAPTFMISPETVTGTGKK	2	0	Unmodified	3616.7567	0.75667136	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	10	0										1							19.107	19.107	4	1.5848E-06	15456	DP690-10	85.469	65.014			NaN	NaN	NaN	0	0	Median	29874000	0	29874000	5179	604	4855	10376	25341	25341		1	9606
GISEETTTGVHNLYK	1	0	Unmodified	1647.8104	0.8104149	571	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	5.5	0.5					1	1											13.898	13.898	2	8.2467E-16	6754	DP690-5	259.35	205			1.016	1.0119	NaN	1	0	Median	84380000	40113000	44267000	5180	571	4856	10377;10378	25342;25343;25344;25345;25346	25343		5	9606
GISHVIVDEIHER	0	1	Unmodified	1502.7841	0.78414057	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	10.3	0.471										2	1						14.189	14.189	3;4	2.9889E-05	8248	DP690-11	124.3	100.05			0.83731	0.95483	0.40839	2	0	Median	635020000	341860000	293170000	5181	1137	4857	10379;10380;10381	25347;25348;25349;25350;25351;25352;25353;25354;25355	25354		9	9606
GISQEQMNEFR	0	1	Unmodified	1337.6034	0.60339901	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	11	0											1						14.788	14.788	2	2.9417E-06	9107	DP690-11	196.88	160.12			0.8141	0.97359	NaN	1	0	Median	116040000	60459000	55580000	5182	476	4858	10382	25356;25357;25358;25359;25360	25357		5	9606
GISQEQMNEFR	0	1	Oxidation (M)	1353.5983	0.59831364	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	1	0	7	4			1								1						12.641	12.641	2	4.882E-06	5427	DP690-3	196.79	166.4			1.5238	1.7198	NaN	1	0	Median	72802000	11916000	60886000	5183	476	4858	10383;10384	25361;25362;25363;25364;25365	25365	578	5	9606
GISSSNEGVEEPSK	1	0	Unmodified	1418.6525	0.65251728	2258	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	12	0												1					11.135	11.135	2	7.2399E-06	3684	DP690-12	178.46	119.48			0.71411	0.85633	NaN	1	0	Median	29740000	17292000	12448000	5184	2258	4859	10385	25366;25367;25368;25369;25370	25368		5	9606
GISTKPVYIPEVELNHK	2	0	Unmodified	1923.0466	0.046562847	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	1	9.83	2.79				1					1		2	2					15.368	15.368	3;4	0.00031629	9504	DP690-12	96.096	85.057			0.693	0.75488	34.56	5	0	Median	709780000	430950000	278840000	5185	1269	4860	10386;10387;10388;10389;10390;10391	25371;25372;25373;25374;25375;25376;25377;25378;25379;25380;25381;25382;25383;25384;25385;25386;25387	25380		17	9606
GISVHISNAEPK	1	0	Unmodified	1250.6619	0.66190017	1185	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	13.3	0.471													2	1			12.454	12.454	2;3	3.0656E-05	5197	DP690-13	187.16	146.8			0.7391	0.78179	14.213	3	0	Plateau	1245500000	700120000	545380000	5186	1185	4861	10392;10393;10394	25388;25389;25390;25391;25392;25393;25394;25395;25396;25397	25394		10	9606
GITENVLDK	1	0	Unmodified	987.52368	0.52367535	1829	Q96BW5	PTER	Phosphotriesterase-related protein	yes	yes	0	0	0	6	0						1											14.216	14.216	2	0.0052887	7165	DP690-6	98.629	34.062			0.8097	0.91254	NaN	1	0	Median	23932000	13701000	10231000	5187	1829	4862	10395	25398;25399	25398		2	9606
GITGVDLFGTTDAVVK	1	0	Unmodified	1591.8457	0.84573777	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														20.186	20.186	2	3.8136E-09	15264	DP690-3	190.66	151.95			1.777	1.8969	NaN	1	0	Median	25183000	8814000	16369000	5188	878	4863	10396	25400;25401;25402;25403;25404	25401		5	9606
GITIDISLWK	1	0	Unmodified	1144.6492	0.64921022	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	9.33	3.68					1				1					1			21.202	21.202	2	9.1532E-05	16241	DP690-9	152.63	107.55			0.9794	0.97463	15.777	3	0	Median	147280000	76503000	70782000	5189	1031;1118	4864	10397;10398;10399	25405;25406;25407;25408;25409;25410;25411;25412;25413;25414;25415	25412		11	9606
GITINAAHVEYSTAAR	0	1	Unmodified	1672.8533	0.85328277	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	13	0													2				14.52	14.52	2;3	4.8948E-06	8074	DP690-13	134.4	115.77			0.7573	0.91051	5.7796	2	0	Median	158880000	93648000	65237000	5190	793	4865	10400;10401	25416;25417;25418;25419;25420	25417		5	9606
GITNLCVIGGDGSLTGADTFR	0	1	Unmodified	2123.0317	0.031717419	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	7	4			1								1						20.179	20.179	2	9.6683E-23	15323	DP690-3	194.01	138.97			NaN	NaN	NaN	0	0	Median	9846700	9846700	0	5191	415	4866	10402;10403	25421;25422	25422		2	9606
GITNLCVIGGDGSLTGANLFR	0	1	Unmodified	2134.0841	0.08408734	1089	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	3	0			1														21.684	21.684	2	6.2902E-06	17099	DP690-3	130.95	101.65			NaN	NaN	NaN	0	0	Median	1989700	1989700	0	5192	1089	4867	10404	25423	25423		1	9606
GIVDQSQQAYQEAFEISK	1	0	Unmodified	2039.98	0.97999942	1014	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	7	0							1										19.841	19.841	2	1.8118E-42	14421	DP690-7	304.08	282.69			1.0087	1.0847	NaN	1	0	Median	47508000	23589000	23919000	5193	1014	4868	10405	25424;25425;25426;25427	25426		4	9606
GIVEFASKPAAR	1	1	Unmodified	1244.6877	0.68772099	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	11	0											1						13.188	13.188	3	0.0050226	6706	DP690-11	100.09	60.238			NaN	NaN	NaN	0	0	Median	0	0	0	5194	566	4869	10406	25428	25428		1	9606
GIVEFSGKPAAR	1	1	Unmodified	1230.6721	0.67207093	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	12	0												2					12.583	12.583	2;3	0.0012405	5579	DP690-12	117.81	74.947			0.77008	0.88101	NaN	1	0	Median	278840000	73217000	205620000	5195	1322	4870	10407;10408	25429;25430;25431;25432;25433;25434;25435	25433		7	9606
GIVHITSESLAK	1	0	Unmodified	1253.698	0.69795133	2528	Q9Y6X8	ZHX2	Zinc fingers and homeoboxes protein 2	yes	yes	0	0	0	11	0											1						13.529	13.529	2	0.008108	7282	DP690-11	72.243	41.926			0.85958	1.0436	NaN	1	0	Median	39939000	21952000	17987000	5196	2528	4871	10409	25436	25436		1	9606
GIVKDIIHDPGR	1	1	Unmodified	1318.7357	0.73573382	1007	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	15	0															1		13.517	13.517	3	0.00089094	6764	DP690-15	92.792	92.792			0.9022	1.0118	NaN	1	0	Median	71637000	36693000	34944000	5197	1007	4872	10410	25437	25437		1	9606
GIVNAVKDPDANGK	2	0	Unmodified	1396.731	0.73104237	1371	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	1	14	0														1			11.617	11.617	3	0.058687	4392	DP690-14	47.037	17.015			1.3368	1.5028	NaN	1	0	Median	15192000	6538300	8653800	5198	1371	4873	10411	25438	25438		1	9606
GIVNEQFLLQR	0	1	Unmodified	1315.7248	0.72483478	800	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1													18.291	18.291	2	0.003414	12804	DP690-4	128.36	73.297			NaN	NaN	NaN	0	0	Median	9769200	9769200	0	5199	800	4874	10412	25439;25440	25439		2	9606
GIVNGAAPELPVPTGGPAVGAR	0	1	Unmodified	1999.0851	0.085073618	547	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	yes	yes	0	0	0	12	0												1					18.207	18.207	2	0.00010038	13481	DP690-12	120.21	87.346			NaN	NaN	NaN	0	0	Median	5133000	5133000	0	5200	547	4875	10413	25441	25441		1	9606
GIVSLSDILQALVLTGGEK	1	0	Unmodified	1912.0881	0.088093311	887	P54619	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1	yes	yes	0	0	0	14	0														1			27.057	27.057	2	0.0050627	23826	DP690-14	72.815	56.465			1.1638	1.3672	NaN	1	0	Median	1187900	547640	640230	5201	887	4876	10414	25442	25442		1	9606
GIVVYTGDR	0	1	Unmodified	978.51345	0.51344502	379	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	3	0			1														13.835	13.835	2	0.026351	7088	DP690-3	98.523	64.27			NaN	NaN	NaN	0	0	Median	9404200	0	9404200	5202	379	4877	10415	25443;25444	25443		2	9606
GIYAVGDVCGK	1	0	Unmodified	1137.5488	0.54884425	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	4.5	0.5				1	1												14.587	14.587	2	0.0013091	7957	DP690-4	104.01	87.474			0.87401	0.88975	4.0964	2	0	Median	222100000	118140000	103960000	5203	353	4878	10416;10417	25445;25446;25447;25448;25449;25450	25446		6	9606
GIYAYGFEKPSAIQQR	1	1	Unmodified	1826.9315	0.93153309	927;696;1266	P60842;P38919;Q14240	EIF4A1;EIF4A3;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	1	10.3	3.77					1								2				15.555	15.555	2;3	1.3251999999999998E-21	9506	DP690-13	236.22	227.51			0.81659	0.81345	14.914	3	0	Plateau	891320000	480620000	410700000	5204	927;696;1266	4879	10418;10419;10420	25451;25452;25453;25454;25455;25456;25457;25458;25459;25460;25461;25462;25463	25456		13	9606
GIYDEAISSFFR	0	1	Unmodified	1403.6721	0.67213051	2360	Q9UJT0	TUBE1	Tubulin epsilon chain	yes	yes	0	0	0	13	0													1				22.973	22.973	2	0.0018599	19059	DP690-13	96.342	73.022			0.83631	0.9813	NaN	1	0	Median	3353500	1713200	1640300	5205	2360	4880	10421	25464;25465;25466	25465		3	9606
GIYQSLEGAVQAGQLK	1	0	Unmodified	1660.8784	0.87843489	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.8	1.48									1	1	1		1				19.586	19.586	2	3.1806E-22	14321	DP690-9	233.13	233.13			0.86302	0.98216	9.7734	4	0	Median	714690000	380410000	334280000	5206	1319	4881	10422;10423;10424;10425	25467;25468;25469;25470;25471;25472;25473;25474;25475;25476;25477;25478;25479;25480;25481;25482;25483	25482		17	9606
GIYTGLSAGLLR	0	1	Unmodified	1219.6925	0.69247202	1101	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	15	0															1		19.027	19.027	2	8.2719E-05	14054	DP690-15	131.11	70.628			0.91111	1.0392	NaN	1	0	Median	43883000	23104000	20779000	5207	1101	4882	10426	25484;25485;25486	25486		3	9606
GKDHVVSDFSEHGSLK	2	0	Unmodified	1740.8431	0.84311201	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	1	11.5	2.18									1		2				1		11.107	11.107	4	1.3499E-05	3852	DP690-11	125.36	92.926			0.84825	0.80904	13.527	4	0	Linear	1264100000	590770000	673310000	5208	891	4883	10427;10428;10429;10430	25487;25488;25489;25490;25491;25492;25493;25494	25488		8	9606
GKEDEGEEAASPMLQIQR	1	1	Oxidation (M)	2002.9266	0.92658365	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	1	5.5	3.5		1							1								13.335	13.335	3	0.00026469	6354	DP690-9	94.973	63.584			0.89444	0.95573	2.267	2	0	Median	33513000	18304000	15209000	5209	1264	4884	10431;10432	25495;25496;25497;25498;25499;25500;25501	25501	1913	7	9606
GKEDEGEEAASPMLQIQR	1	1	Unmodified	1986.9317	0.93166902	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								14.97	14.97	3	0.013626	8387	DP690-9	54.103	28.917			0.95831	1.1115	NaN	1	0	Median	13934000	6066900	7867400	5210	1264	4884	10433	25502;25503	25503		2	9606
GKEIDFDDVAAINPELLQLLPLHPK	2	0	Unmodified	2784.5062	0.50618138	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	1	10	1									1		1						22.874	22.874	4	2.4165E-10	20349	DP690-11	145.67	132.99			0.69808	0.8325	28.024	2	0	Median	95010000	56989000	38022000	5211	1950	4885	10434;10435	25504;25505;25506;25507;25508	25506		5	9606
GKIEEVHLPVEK	2	0	Unmodified	1376.7664	0.76636524	214	O60678	PRMT3	Protein arginine N-methyltransferase 3	yes	yes	0	0	1	4	0				1													12.895	12.895	3	0.0022098	5770	DP690-4	84.365	84.365			0.87344	0.90115	NaN	1	0	Median	10943000	5819100	5124100	5212	214	4886	10436	25509;25510	25509		2	9606
GKKPDIDITGPK	3	0	Unmodified	1267.7136	0.71360139	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	2	9	0									1								10.569	10.569	3	0.0004029	2858	DP690-9	107.65	83.556			0.57633	0.63249	NaN	1	0	Median	26961000	17552000	9409800	5213	1145	4887	10437	25511;25512;25513	25511		3	9606
GKLDVQFSGLTK	2	0	Unmodified	1291.7136	0.71360139	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	9.5	2.96		1							1	2	3	1					15.255	15.255	2;3	1.5491E-16	9711	DP690-11	201.09	153.9			0.81565	0.88029	16.754	5	0	Median	3904199999.9999995	2221700000	1682499999.9999998	5214	549	4888	10438;10439;10440;10441;10442;10443;10444;10445	25514;25515;25516;25517;25518;25519;25520;25521;25522;25523;25524;25525;25526;25527;25528;25529;25530;25531;25532;25533;25534;25535;25536;25537;25538;25539	25524		26	9606
GKLEAIITPPPAK	2	0	Unmodified	1333.7969	0.79693709	249	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	1	14	0														1			14.154	14.154	2	0.017398	7727	DP690-14	123.01	65.458			NaN	NaN	NaN	0	0	Median	0	0	0	5215	249	4889	10446	25540	25540		1	9606
GKNQAFIEMNTEEAANTMVNYYTSVTPVLR	1	1	2 Oxidation (M)	3422.6123	0.61225572	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	2	1	12	0												1					18.787	18.787	3	9.9967E-06	14143	DP690-12	87.772	72.338			0.61115	0.78069	NaN	1	0	Median	21293000	11378000	9914900	5216	595	4890	10447	25541;25542;25543;25544	25541	787;788	4	9606
GKNQAFIEMNTEEAANTMVNYYTSVTPVLR	1	1	Oxidation (M)	3406.6173	0.6173411	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	1	1	12	0												1					21.723	21.723	3	1.5377E-05	18033	DP690-12	92.901	92.901			0.85554	1.0472	NaN	1	0	Median	6772400	2984700	3787700	5217	595	4890	10448	25545;25546;25547;25548;25549	25546	787;788	5	9606
GKPLALVEEIR	1	1	Unmodified	1223.7238	0.72377215	1990	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	1	15	0															1		15.603	15.603	2	0.017627	9575	DP690-15	89.029	71.933			0.70653	0.79083	NaN	1	0	Median	76257000	46378000	29879000	5218	1990	4891	10449	25550	25550		1	9606
GKPLPEYHVR	1	1	Unmodified	1194.6509	0.65094155	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.5	0.5									1	1							10.467	10.467	3	0.0011744	2965	DP690-10	96.143	69.393			2.4074	2.6557	NaN	1	0	Median	545790000	170180000	375610000	5219	1046	4892	10450;10451	25551;25552;25553;25554;25555;25556	25552		6	9606
GKSDENEDPSVVGEFK	2	0	Unmodified	1735.7901	0.79007339	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	1	10	0										1							13.929	13.929	3	0.0022351	7965	DP690-10	74.726	41.409			0.73887	0.90691	NaN	1	0	Median	99927000	60331000	39595000	5220	2276	4893	10452	25557;25558;25559	25559		3	9606
GKVEEVELPVEK	2	0	Unmodified	1354.7344	0.73439641	1962	Q99873;Q9NR22	PRMT1;PRMT8	Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8	yes	no	0	0	1	10	4						1								1			13.706	13.706	2	3.3867E-05	6592	DP690-6	193.62	193.62			1.1832	1.2726	61.045	2	0	Median	124540000	55003000	69538000	5221	1962	4894	10453;10454	25560;25561;25562;25563;25564;25565;25566	25563		7	9606
GLAEDIENEVVQITWNR	0	1	Unmodified	1984.9854	0.98541915	1314	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	11	0											1						25.326	25.326	2	0.010036	23254	DP690-11	118.76	71.521			NaN	NaN	NaN	0	0	Median	0	0	0	5222	1314	4895	10455	25567	25567		1	9606
GLAFELVYSPAIK	1	0	Unmodified	1406.781	0.78095267	1040	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	15	0															1		20.672	20.672	2	0.0039192	15908	DP690-15	87.298	67.168			0.60979	0.69317	NaN	1	0	Median	1923200	1196000	727190	5223	1040	4896	10456	25568;25569	25568		2	9606
GLAFLDELR	0	1	Unmodified	1032.5604	0.56039521	1460	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	10	0										1							20.509	20.509	2	0.0036693	17467	DP690-10	129.68	75.908			NaN	NaN	NaN	0	0	Median	14470000	14470000	0	5224	1460	4897	10457	25570;25571	25570		2	9606
GLAGAVSELLR	0	1	Unmodified	1084.6241	0.6240581	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															20.022	20.022	2	0.02088	13648	DP690-2	72.325	26.353			1.4677	1.5333	NaN	1	0	Median	5292600	2205200	3087400	5225	2482	4898	10458	25572	25572		1	9606
GLAIQHPGTQVLIGTDSIPNLHK	1	0	Unmodified	2408.3176	0.31759275	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1	0	1																17.032	17.032	4	0.063897	8496	DP690-1	31.314	23.171			1.0055	1.0041	NaN	1	0	Median	1121000	522120	598930	5226	1437	4899	10459	25573	25573		1	9606
GLAITFVSDENDAK	1	0	Unmodified	1478.7253	0.72528829	63;1237	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	no	no	0	0	0	13	0													1				17.826	17.826	2	2.7815E-15	12574	DP690-13	242.97	198.33			0.87867	0.96168	NaN	1	0	Median	317430000	166300000	151140000	5227	63;1237	4900	10460	25574;25575;25576;25577	25575		4	9606
GLANPEPAPEPK	1	0	Unmodified	1218.6245	0.62445203	131	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	2	0		1															12.17	12.17	2	0.027597	4335	DP690-2	68.557	40.545			0.71077	0.69955	NaN	1	0	Median	1989400	1087100	902290	5228	131	4901	10461	25578;25579	25578		2	9606
GLAPDLPEDLYHLIK	1	0	Unmodified	1692.9087	0.90867238	975	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	13.3	3.77								1								2	21.281	21.281	2;3	4.2774E-06	16064	DP690-16	160.18	136.1			0.8548	0.96544	5.397	3	0	Median	62251000	33305000	28946000	5229	975	4902	10462;10463;10464	25580;25581;25582;25583;25584;25585;25586;25587;25588;25589;25590;25591;25592	25586		13	9606
GLAPDLPEDLYHLIKK	2	0	Unmodified	1821.0036	0.0036354	975	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	16	0																2	19.836	19.836	3;4	4.9089E-05	14507	DP690-16	118.52	97.424			0.7992	0.91366	7.4418	2	0	Median	26178000	14764000	11415000	5230	975	4903	10465;10466	25593;25594;25595;25596;25597	25594		5	9606
GLAPIECYNR	0	1	Unmodified	1191.5706	0.57064232	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										2							14.669	14.669	2	0.055297	9064	DP690-10	87.181	37.645			NaN	NaN	NaN	0	0	Median	0	0	0	5231	13	4904	10467;10468	25598;25599	25599		2	9606
GLATVIYPYLLPFISK	1	0	Unmodified	1794.0331	0.033144614	292	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	10	0										1							25.278	25.278	2	0.00025272	23392	DP690-10	114.24	65.291			0.70276	0.84608	NaN	1	0	Median	4334600	2577700	1757000	5232	292	4905	10469	25600;25601;25602;25603	25601		4	9606
GLCAIAQAESLR	0	1	Unmodified	1287.6605	0.66051996	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	12.7	4.03							1								1	1	16.811	16.811	2	2.9694E-10	11079	DP690-15	214.05	160.56			1.0369	1.1184	20.858	2	0	Median	567530000	295220000	272310000	5233	569	4906	10470;10471;10472	25604;25605;25606;25607;25608;25609;25610;25611;25612;25613	25607		10	9606
GLCESVVEADLVEALEK	1	0	Unmodified	1859.9186	0.91864472	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												1					22.932	22.932	2	1.4724E-07	19395	DP690-12	166.24	137.85			0.81695	0.98788	NaN	1	0	Median	14285000	7645000	6640000	5234	1750	4907	10473	25614;25615;25616;25617;25618	25614		5	9606
GLCGAIHSSIAK	1	0	Unmodified	1212.6285	0.62849155	678	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	14.5	0.5														1	1		12.426	12.426	3	0.0080262	5284	DP690-14	77.593	44.863			0.83462	0.96774	7.2312	2	0	Median	224210000	121710000	102500000	5235	678	4908	10474;10475	25619;25620;25621;25622;25623;25624	25621		6	9606
GLDFALLQK	1	0	Unmodified	1003.5702	0.57023162	1180	Q13123	IK	Protein Red	yes	yes	0	0	0	11	0											3						19.2	19.2	2	0.012622	15450	DP690-11	108.09	52.077			NaN	NaN	NaN	0	0	Median	26391000	26391000	0	5236	1180	4909	10476;10477;10478	25625;25626;25627	25625		3	9606
GLDNTEFQGK	1	0	Unmodified	1107.5197	0.51965261	2028	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	yes	no	0	0	0	14	0														1			12.925	12.925	2	0.0050415	6014	DP690-14	90.601	73.128			0.93345	1.1359	NaN	1	0	Median	42189000	20594000	21594000	5237	2028	4910	10479	25628;25629	25628		2	9606
GLDPALGSETLASR	0	1	Unmodified	1385.7151	0.71505795	2480	Q9Y448	KNSTRN	Small kinetochore-associated protein	yes	yes	0	0	0	15	0															1		16.394	16.394	2	6.9526E-05	10606	DP690-15	160.67	125.95			0.94202	1.092	NaN	1	0	Median	28790000	15694000	13096000	5238	2480	4911	10480	25630;25631	25631		2	9606
GLDVNKCEIAR	1	1	Unmodified	1273.6449	0.6448699	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	1	13	0													1				12.212	12.212	3	3.9795E-05	4938	DP690-13	133.89	114.23			0.99651	1.1305	NaN	1	0	Median	95020000	48934000	46086000	5239	2395	4912	10481	25632;25633;25634;25635	25635		4	9606
GLEAALVYVENAHVAGK	1	0	Unmodified	1739.9206	0.92063405	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							19.547	19.547	3	0.051701	16057	DP690-10	58.159	32.601			NaN	NaN	NaN	0	0	Median	0	0	0	5240	1240	4913	10482	25636	25636		1	9606
GLEDNQGGQYESWNYYR	0	1	Unmodified	2077.8766	0.87659699	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	8.33	3.77			1								2						17.633	17.633	2	4.0184000000000004E-24	13224	DP690-11	265.53	244.3			0.81184	0.97482	NaN	1	0	Median	64850000	36435000	28415000	5241	1613	4914	10483;10484;10485	25637;25638;25639;25640;25641	25637		5	9606
GLEHVTVDDLVAEITPK	1	0	Unmodified	1834.9676	0.96764382	2179	Q9NPA8	ENY2	Transcription and mRNA export factor ENY2	yes	yes	0	0	0	12	4								1								1	20.989	20.989	3	1.7795E-06	15756	DP690-16	130.21	96.95			0.77428	0.8918	0.51972	2	0	Median	13022000	7961200	5060700	5242	2179	4915	10486;10487	25642;25643;25644;25645;25646	25642		5	9606
GLELLAASEAPR	0	1	Unmodified	1225.6667	0.6666512	1583	Q86WX3	RPS19BP1	Active regulator of SIRT1	yes	yes	0	0	0	16	0																1	17.486	17.486	2	0.00042531	11728	DP690-16	114.4	68.429			0.7499	0.87216	NaN	1	0	Median	15950000	9993800	5955900	5243	1583	4916	10488	25647;25648	25647		2	9606
GLELLENSLLR	0	1	Unmodified	1255.7136	0.71360139	1802	Q92990	GLMN	Glomulin	yes	yes	0	0	0	4	0				1													21.19	21.19	2	0.0019371	16088	DP690-4	98.582	30.199			0.84716	0.97784	NaN	1	0	Median	2425800	1405800	1020000	5244	1802	4917	10489	25649;25650	25649		2	9606
GLELQPQDNNGLCDPYIK	1	0	Unmodified	2072.9837	0.98370459	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	10	0										1							18.138	18.138	2	0.0090197	14066	DP690-10	119.87	85.117			NaN	NaN	NaN	0	0	Median	27332000	27332000	0	5245	2276	4918	10490	25651	25651		1	9606
GLENPLPERPR	0	2	Unmodified	1276.6888	0.68878362	871	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	1	12	0												1					13.146	13.146	3	0.063597	6361	DP690-12	73.067	60.436			0.64783	0.73454	NaN	1	0	Median	76857000	51107000	25750000	5246	871	4919	10491	25652;25653	25652		2	9606
GLESLPPLRPQQNPVLPVAGER	0	2	Unmodified	2366.307	0.30702806	905	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	3	0			1														17.96	17.96	3	0.0020872	12576	DP690-3	68.411	57.784			0.63249	0.6543	NaN	1	0	Median	23113000	14717000	8396300	5247	905	4920	10492	25654;25655	25654		2	9606
GLESTTLADKDGEIYCK	2	0	Unmodified	1898.8932	0.89315825	548	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	1	15	0															2		14.537	14.537	2;3	8.1509E-08	8089	DP690-15	160.81	146.86			0.89571	1.026	4.4024	2	0	Median	278170000	144720000	133450000	5248	548	4921	10493;10494	25656;25657;25658;25659;25660;25661;25662;25663	25658		8	9606
GLEVINDYHFR	0	1	Unmodified	1361.6728	0.67279921	1367	Q16666;Q6K0P9	IFI16;PYHIN1	Gamma-interferon-inducible protein 16;Pyrin and HIN domain-containing protein 1	yes	no	0	0	0	11	0											1						16.643	16.643	3	0.0006234	11819	DP690-11	99.53	78.135			0.7959	0.95717	NaN	1	0	Median	72121000	36716000	35404000	5249	1367	4922	10495	25664;25665;25666;25667	25664		4	9606
GLFATQLIR	0	1	Unmodified	1017.5971	0.59711507	1471	Q6GMV2	SMYD5	SET and MYND domain-containing protein 5	yes	yes	0	0	0	5	0					1												18.384	18.384	2	1.174E-06	12327	DP690-5	172.03	111.06			NaN	NaN	NaN	0	0	Median	28538000	28538000	0	5250	1471	4923	10496	25668;25669	25668		2	9606
GLFDEEMNEILTDPSDDTK	1	0	Oxidation (M)	2183.9416	0.94162459	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	10.2	0.687									1	3	2						20.73	20.73	2	4.9657E-37	14859	DP690-9	290.17	270.39			0.85842	1.0602	21.113	3	0	Median	192760000	111940000	80817000	5251	1319	4924	10497;10498;10499;10500;10501;10502	25670;25671;25672;25673;25674;25675;25676;25677;25678;25679;25680;25681;25682;25683;25684	25682	2020	15	9606
GLFDEEMNEILTDPSDDTK	1	0	Unmodified	2167.9467	0.94670997	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.67	0.471									1	2							22.892	22.892	2	2.1962E-50	20481	DP690-10	400.06	347.27			0.83647	1.0498	1.8028	2	0	Median	71175000	36274000	34901000	5252	1319	4924	10503;10504;10505	25685;25686;25687;25688;25689;25690;25691;25692;25693	25687		9	9606
GLFIIDDK	1	0	Unmodified	919.50148	0.50148335	1128;1188	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	no	no	0	0	0	12.3	3.45							1	1						1	3		18.413	18.413	2	0.00040365	12605	DP690-7	189.62	138.05			0.93867	0.94424	4.0856	4	0	Median	6874799999.999999	3471899999.9999995	3402899999.9999995	5253	1128;1188	4925	10506;10507;10508;10509;10510;10511	25694;25695;25696;25697;25698;25699	25698		2	9606
GLFIIDDKGILR	1	1	Unmodified	1358.7922	0.79218606	1128;1188	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	no	no	0	0	1	11.6	3.64							2	3	2					1	4	2	19.295	19.295	2;3	4.5096E-11	12855	DP690-8	190.62	142.75			0.87543	0.94647	9.967	12	0	Median	4102499999.9999995	2106099999.9999998	1996399999.9999998	5254	1128;1188	4926	10512;10513;10514;10515;10516;10517;10518;10519;10520;10521;10522;10523;10524;10525	25700;25701;25702;25703;25704;25705;25706;25707;25708;25709;25710;25711;25712;25713;25714;25715;25716;25717;25718;25719;25720;25721;25722;25723;25724;25725;25726;25727;25728;25729;25730;25731;25732;25733;25734;25735;25736;25737;25738;25739;25740;25741;25742;25743	25737		44	9606
GLFIIDPNGVIK	1	0	Unmodified	1284.7442	0.74417324	620	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	12.7	4.03							1								1	1	20.954	20.954	2	0.00012315	16205	DP690-15	134.26	84.152			0.60254	0.69653	44.322	3	0	Median	76900000	44294000	32606000	5255	620	4927	10526;10527;10528	25744;25745;25746;25747;25748;25749;25750;25751;25752;25753;25754	25745		11	9606
GLFPFTHVK	1	0	Unmodified	1044.5757	0.57565135	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	6	0						2											16.275	16.275	2;3	0.0029412	9938	DP690-6	108.09	61.424			0.82318	0.85498	NaN	1	0	Median	330670000	177160000	153510000	5256	753	4928	10529;10530	25755;25756;25757;25758;25759	25757		5	9606
GLFSFFQGR	0	1	Unmodified	1057.5345	0.53451481	2527	Q9Y6X3	MAU2	MAU2 chromatid cohesion factor homolog	yes	yes	0	0	0	12	0												2					21.462	21.462	2	0.029068	17713	DP690-12	116.88	58.069			NaN	NaN	NaN	0	0	Median	0	0	0	5257	2527	4929	10531;10532	25760;25761	25761		2	9606
GLFTGLTPR	0	1	Unmodified	960.53927	0.53926584	2517	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	14.5	0.5														1	1		17.655	17.655	2	0.00046299	12408	DP690-14	152.47	71.089			0.7524	0.81497	1.3629	2	0	Median	795490000	458600000	336890000	5258	2517	4930	10533;10534	25762;25763;25764;25765;25766;25767;25768	25763		7	9606
GLFYFDNSFRPVPLEQTYVGITEK	1	1	Unmodified	2819.417	0.41703202	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	10	0										1							21.82	21.82	3	0.011783	19278	DP690-10	52.657	41.753			1.0631	1.2873	NaN	1	0	Median	22284000	10688000	11597000	5259	269	4931	10535	25769	25769		1	9606
GLGAFVIDSDHLGHR	0	1	Unmodified	1592.8059	0.80593865	1178	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	4	0				1													16.056	16.056	3	8.4422E-06	9924	DP690-4	156	132.29			0.7989	0.87159	NaN	1	0	Median	56774000	31760000	25014000	5260	1178	4932	10536	25770;25771	25771		2	9606
GLGAQEQGATDHIK	1	0	Unmodified	1423.7056	0.7055559	1826	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	0	14	0														1			10.991	10.991	3	0.0001121	3446	DP690-14	92.65	76.709			0.89015	1.0828	NaN	1	0	Median	44921000	23807000	21114000	5261	1826	4933	10537	25772;25773;25774;25775	25772		4	9606
GLGFSIAGGK	1	0	Unmodified	905.49707	0.49706667	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							16.249	16.249	2	0.0033812	11285	DP690-10	93.143	63.994			0.80394	0.99314	NaN	1	0	Median	147610000	85305000	62302000	5262	1254	4934	10538	25776;25777	25776		2	9606
GLGHQVATDALVAMEK	1	0	Oxidation (M)	1654.8349	0.83485551	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	1	0	8	4				1								1					14.095	14.095	2;3	0.00051615	7699	DP690-12	111.12	87.89			0.77076	0.88324	15.234	2	0	Median	37934000	22562000	15372000	5263	2475	4935	10539;10540	25778;25779;25780	25778	2914	3	9606
GLGHQVATDALVAMEK	1	0	Unmodified	1638.8399	0.83994089	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	12	0												1					17	17	2	0.0031473	11781	DP690-12	111.72	69.475			NaN	NaN	NaN	0	0	Median	7162500	7162500	0	5264	2475	4935	10541	25781;25782	25781		2	9606
GLGILSLK	1	0	Unmodified	799.51674	0.51673948	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							18.089	18.089	2	0.06131	13913	DP690-10	109.01	27.229			1.7317	2.1374	NaN	1	0	Median	84896000	30422000	54474000	5265	1782	4936	10542	25783	25783		0	9606
GLGLCATALVSYLIR	0	1	Unmodified	1605.8912	0.89124818	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								24.129	24.129	2	0.04006	19612	DP690-9	92.866	56.281			NaN	NaN	NaN	0	0	Median	0	0	0	5266	1453	4937	10543	25784	25784		1	9606
GLGLDDALEPR	0	1	Unmodified	1154.5932	0.5931519	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	13	0													1				17.559	17.559	2	0.0044772	12242	DP690-13	123.21	66.774			NaN	NaN	NaN	0	0	Median	54605000	0	54605000	5267	2427	4938	10544	25785;25786	25786		2	9606
GLGLSPDLVVCR	0	1	Unmodified	1284.686	0.68600643	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	5	1				1		1											18.443	18.443	2	4.325E-05	12796	DP690-4	183.43	95.255			0.90567	0.95338	22.364	2	0	Median	441720000	239320000	202400000	5268	516	4939	10545;10546	25787;25788;25789;25790;25791;25792;25793	25787		7	9606
GLGMTLSYLFR	0	1	Oxidation (M)	1272.6536	0.65364367	71	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	yes	yes	0	1	0	15	0															1		21.313	21.313	2	0.0056484	16646	DP690-15	109.48	53.045			NaN	NaN	NaN	0	0	Median	1159000	1159000	0	5269	71	4940	10547	25794;25795	25794	80	2	9606
GLGQECVLSSSPAVLALQTSLVFSR	0	1	Unmodified	2618.3738	0.373787	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.2	0.4									4	1							24.186	24.186	2;3	2.7198E-82	19650	DP690-9	270.95	270.95			0.87156	1.0897	16.461	5	0	Median	29503000	16965000	12538000	5270	1046	4941	10548;10549;10550;10551;10552	25796;25797;25798;25799;25800;25801;25802;25803;25804;25805;25806;25807	25807		11	9606
GLGTDEDSLIEIICSR	0	1	Unmodified	1776.8564	0.85637882	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	13.3	2.43						2			1				1	18	2	1	26.224	26.224	2	1.5593000000000001E-86	16531	DP690-6	401.55	367.28			0.86134	1.0569	13.389	17	0	Median	3168399999.9999995	1717599999.9999998	1450900000	5271	404	4942	10553;10554;10555;10556;10557;10558;10559;10560;10561;10562;10563;10564;10565;10566;10567;10568;10569;10570;10571;10572;10573;10574;10575;10576;10577	25808;25809;25810;25811;25812;25813;25814;25815;25816;25817;25818;25819;25820;25821;25822;25823;25824;25825;25826;25827;25828;25829;25830;25831;25832;25833;25834;25835;25836;25837;25838;25839;25840;25841;25842;25843;25844;25845;25846;25847;25848;25849;25850;25851;25852;25853;25854;25855;25856;25857;25858;25859;25860;25861;25862;25863;25864	25857		57	9606
GLGTDEDTLIEILASR	0	1	Unmodified	1701.8785	0.87849447	365	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	10	4						1								1			23.369	23.369	2	7.9649E-49	17740	DP690-6	345.57	276.78			0.90406	1.0669	12.941	2	0	Median	32980000	17297000	15682000	5272	365	4943	10578;10579	25865;25866;25867;25868;25869;25870;25871;25872;25873;25874	25874		10	9606
GLGTDEESILTLLTSR	0	1	Unmodified	1703.8941	0.89414453	427	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	7	0							1										23.751	23.751	2	2.9772E-12	18959	DP690-7	203.51	136.4			1.5137	1.713	NaN	1	0	Median	3333400	1256400	2077000	5273	427	4944	10580	25875;25876;25877;25878;25879	25878		5	9606
GLHQSIEEFR	0	1	Unmodified	1214.6044	0.60438529	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.5	2.99		1							2	2	1						13.422	13.422	2;3	3.169E-05	7195	DP690-10	150.35	119.79			0.82529	0.8985	15.905	6	0	Median	2171400000	1162300000	1009099999.9999999	5274	1319	4945	10581;10582;10583;10584;10585;10586	25880;25881;25882;25883;25884;25885;25886;25887;25888;25889;25890;25891;25892;25893;25894;25895	25882		16	9606
GLIDYNFHCFR	0	1	Unmodified	1440.6609	0.66085431	2160	Q9HB90;Q9NQL2	RRAGC;RRAGD	Ras-related GTP-binding protein C;Ras-related GTP-binding protein D	yes	no	0	0	0	13	0													1				17.616	17.616	3	0.020744	12377	DP690-13	58.37	38.743			0.69979	0.86206	NaN	1	0	Median	22450000	13749000	8700800	5275	2160	4946	10587	25896	25896		1	9606
GLIEIISNAAEYENIPIR	0	1	Unmodified	2014.0735	0.073505879	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	9.5	0.5									1	1							23.625	23.625	2	2.9078E-33	21462	DP690-10	274.8	274.8			0.68366	0.8516	22.586	2	0	Median	25954000	14790000	11164000	5276	269	4947	10588;10589	25897;25898;25899;25900;25901;25902;25903;25904;25905	25897		9	9606
GLIENPALLR	0	1	Unmodified	1094.6448	0.64479354	307	O95168	NDUFB4	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4	yes	yes	0	0	0	16	0																1	17.301	17.301	2	0.0016701	11464	DP690-16	104.37	61.119			0.7415	0.8624	NaN	1	0	Median	11803000	7454500	4348900	5277	307	4948	10590	25906;25907;25908	25906		3	9606
GLIEPISMIVPR	0	1	Oxidation (M)	1339.7534	0.75335771	2421	Q9UQ03	CORO2B	Coronin-2B	yes	yes	0	1	0	13	0													1				19.4	19.4	2	0.0072532	14641	DP690-13	87.258	64.678			0.68358	0.8419	NaN	1	0	Median	17877000	11294000	6583400	5278	2421	4949	10591	25909;25910;25911	25911	2850	3	9606
GLIPVFALGR	0	1	Unmodified	1041.6335	0.63350058	2370	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	11	0											1						21.054	21.054	2	0.00043682	18005	DP690-11	120.49	120.49			0.72124	0.87172	NaN	1	0	Median	22130000	12878000	9251600	5279	2370	4950	10592	25912;25913;25914;25915;25916	25912		5	9606
GLKEGIPALDNFLDKL	2	0	Unmodified	1741.9614	0.96143623	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	2	11	0											1						22.647	22.647	3	0.00046282	20095	DP690-11	96.435	81.413			0.7818	0.94368	NaN	1	0	Median	18562000	7999800	10562000	5280	483	4951	10593	25917;25918;25919;25920	25917		4	9606
GLKPSCTIIPLMK	2	0	Oxidation (M)	1472.8095	0.80949238	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	1	2	0		1															14.697	14.697	3	0.012026	7323	DP690-2	65.495	35.057			0.73263	0.76057	NaN	1	0	Median	39897000	22857000	17040000	5281	789	4952	10594	25921;25922	25922	1179	2	9606
GLKVEENIQK	2	0	Unmodified	1156.6452	0.64518747	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	1	9	0									1								11.017	11.017	2	0.0066181	3415	DP690-9	104.06	52.864			0.84958	1.0411	NaN	1	0	Median	3058300	1874400	1183900	5282	1696	4953	10595	25923	25923		1	9606
GLLALLFPLR	0	1	Unmodified	1111.7118	0.7117509	312	O95248	SBF1	Myotubularin-related protein 5	yes	yes	0	0	0	10	0										1							24.909	24.909	2	0.00017009	22999	DP690-10	132.29	114.25			0.69279	0.87149	NaN	1	0	Median	9754600	5261900	4492700	5283	312	4954	10596	25924;25925;25926;25927	25925		4	9606
GLLCLGNVISALGDDKK	2	0	Unmodified	1771.9502	0.95021962	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	1	10	0										1							20.969	20.969	3	2.6949E-05	18107	DP690-10	121.95	121.95			0.73785	0.86684	NaN	1	0	Median	177260000	97226000	80035000	5284	311	4955	10597	25928;25929;25930	25930		3	9606
GLLDDLRNDLDR	0	2	Unmodified	1413.7212	0.72120596	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	12	0												1					20.864	20.864	3	0.0070978	16948	DP690-12	72.321	35.367			0.77022	0.87331	NaN	1	0	Median	20007000	11326000	8680800	5285	1131	4956	10598	25931;25932;25933	25932		3	9606
GLLDQNGFTADDINK	1	0	Unmodified	1619.7791	0.77911477	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	12	0												1					18.414	18.414	2	1.0259E-06	13738	DP690-12	184.24	130.17			0.83832	0.98874	NaN	1	0	Median	84832000	44216000	40616000	5286	1147	4957	10599	25934;25935	25935		2	9606
GLLDVTCK	1	0	Unmodified	904.4688	0.46880301	1019	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	16	0																1	15.462	15.462	2	0.052721	9113	DP690-16	114.72	34.259			0.83061	0.93979	NaN	1	0	Median	49050000	25524000	23526000	5287	1019	4958	10600	25936	25936		0	9606
GLLEFEHQR	0	1	Unmodified	1127.5724	0.57235688	1288	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	3	0			1														14.375	14.375	2	0.012699	7803	DP690-3	86.833	56.666			1.5661	1.8058	NaN	1	0	Median	18714000	6552700	12161000	5288	1288	4959	10601	25937;25938	25937		2	9606
GLLGALTSTPYSPTQHLER	0	1	Unmodified	2040.064	0.064003825	2226	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	6	0						1											18.275	18.275	3	0.00093358	12160	DP690-6	75.564	63.161			0.77702	0.89078	NaN	1	0	Median	7117300	3820500	3296900	5289	2226	4960	10602	25939	25939		1	9606
GLLHSFDLLK	1	0	Unmodified	1141.6495	0.64954457	2044	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	12	0												1					18.348	18.348	2	0.043433	13675	DP690-12	88.37	51.609			NaN	NaN	NaN	0	0	Median	10221000	0	10221000	5290	2044	4961	10603	25940	25940		1	9606
GLLKPGLNVVLEGPK	2	0	Unmodified	1532.929	0.92901389	1961	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	1	14	0														1			17.335	17.335	3	0.0016015	12128	DP690-14	81.327	81.327			0.83773	0.9417	NaN	1	0	Median	19594000	9062900	10531000	5291	1961	4962	10604	25941	25941		1	9606
GLLLYGPPGTGK	1	0	Unmodified	1171.6601	0.66010926	1628	Q8IYT4	KATNAL2	Katanin p60 ATPase-containing subunit A-like 2	yes	yes	0	0	0	3	0			1														16.987	16.987	2	4.6519E-05	11301	DP690-3	128.28	0			1.0772	1.1518	NaN	1	0	Median	23642000	10752000	12890000	5292	1628	4963	10605	25942;25943;25944;25945	25943		4	9606
GLLPQLLGVAPEK	1	0	Unmodified	1333.7969	0.79693709	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	12	0												1					19.887	19.887	2	0.00016598	15762	DP690-12	120.63	0			0.69334	0.832	NaN	1	0	Median	28819000	16792000	12027000	5293	2359	4964	10606	25946;25947;25948;25949	25948		4	9606
GLLQSGQIPGR	0	1	Unmodified	1124.6302	0.63020611	438	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	11	4							1								1		15.001	15.001	2	0.00027115	8759	DP690-15	157.68	95.986			0.80422	0.85561	4.3206	2	0	Median	392470000	207780000	184680000	5294	438	4965	10607;10608	25950;25951;25952;25953	25951		4	9606
GLLSAEVAR	0	1	Unmodified	914.51853	0.5185304	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.816									1	1	1						14.682	14.682	2	0.0005136	7971	DP690-9	150.17	67.902			0.85146	0.95018	6.961	3	0	Median	715780000	395930000	319860000	5295	1319	4966	10609;10610;10611	25954;25955;25956;25957;25958;25959;25960;25961;25962;25963	25960		10	9606
GLLSSLDHTSIR	0	1	Unmodified	1297.699	0.69901396	420	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	0	15	0															1		16.305	16.305	3	0.0023653	10570	DP690-15	74.611	54.375			0.83101	0.96048	NaN	1	0	Median	12128000	6872900	5255300	5296	420	4967	10612	25964;25965	25964		2	9606
GLMPGLTFSNELISR	0	1	Oxidation (M)	1649.8447	0.84469192	1535;635	Q7LG56;P31350	RRM2B;RRM2	Ribonucleoside-diphosphate reductase subunit M2 B;Ribonucleoside-diphosphate reductase subunit M2	no	no	0	1	0	6	0						1											19.483	19.483	2	6.9069E-06	13411	DP690-6	177.04	146.9			0.71238	0.81811	NaN	1	0	Median	10311000	5862000	4449200	5297	1535;635	4968	10613	25966;25967;25968;25969	25968	872	4	9606
GLMVITGSESPIVVVLSGSMEPAFHR	0	1	2 Oxidation (M)	2744.3877	0.3877225	1026	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	0	2	0	16	0																1	21.373	21.373	3	0.00012964	16340	DP690-16	76.417	58.323			0.5825	0.68465	NaN	1	0	Median	3494500	2592700	901810	5298	1026	4969	10614	25970;25971;25972	25972	1555;1556	3	9606
GLNSWQQQQQQQQQPRPPPR	0	2	Unmodified	2428.2108	0.21083627	2162	Q9HBL0	TNS1	Tensin-1	yes	yes	0	0	1	10	0										1							12.434	12.434	3	4.2095E-05	5758	DP690-10	116.35	100.38			0.41095	0.48946	NaN	1	0	Median	45379000	33278000	12101000	5299	2162	4970	10615	25973;25974;25975	25975		3	9606
GLNTIPLFVQLLYSPIENIQR	0	1	Unmodified	2427.3526	0.35258127	658	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	11	0											2						26.826	26.826	2	0.0095539	24892	DP690-11	92.935	66.811			NaN	NaN	NaN	0	0	Median	680340	680340	0	5300	658	4971	10616;10617	25976;25977	25976		2	9606
GLNVDQLNMLGEK	1	0	Oxidation (M)	1445.7184	0.71842877	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	1	0	3	0			1														16.952	16.952	2	0.00052153	11230	DP690-3	113.67	63.637			0.92241	0.9765	NaN	1	0	Median	34718000	17003000	17715000	5301	724	4972	10618	25978;25979;25980	25980	1067	3	9606
GLNVIGASDQSPLQSPSNLR	0	1	Unmodified	2052.06	0.05998108	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	0	10	0										1							17.878	17.878	2	2.8053E-31	13660	DP690-10	247.17	247.17			0.78551	0.97929	NaN	1	0	Median	72551000	41084000	31468000	5302	2155	4973	10619	25981;25982;25983;25984	25981		4	9606
GLPFQANAQDIINFFAPLKPVR	1	1	Unmodified	2455.3376	0.33759991	1165	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	1	13	0													1				24.4	24.4	3	3.5317E-10	20684	DP690-13	152.9	116.69			0.71613	0.85279	NaN	1	0	Median	6721800	3886200	2835600	5303	1165	4974	10620	25985;25986;25987;25988;25989	25987		5	9606
GLPLGSAVSSPVLFSPVGR	0	1	Unmodified	1839.0254	0.025433475	1738	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	11	0											1						21.081	21.081	2	0.061947	18039	DP690-11	85.287	39.919			NaN	NaN	NaN	0	0	Median	0	0	0	5304	1738	4975	10621	25990	25990		1	9606
GLPLLVALLDHPR	0	1	Unmodified	1412.8504	0.85036964	69	O00192	ARVCF	Armadillo repeat protein deleted in velo-cardio-facial syndrome	yes	yes	0	0	0	11.2	0.433											3	1					22.027	22.027	2;3	1.6667E-05	19405	DP690-11	142.89	142.89			0.55148	0.67425	12.001	2	0	Median	32923000	26052000	6871300	5305	69	4976	10622;10623;10624;10625	25991;25992;25993;25994;25995;25996;25997;25998	25994		8	9606
GLPLVDDGGWNTVPISK	1	0	Unmodified	1766.9203	0.9202997	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	10	0										1							20.232	20.232	2	0.00079533	17069	DP690-10	111.31	56.827			0.67331	0.83149	NaN	1	0	Median	58095000	33707000	24387000	5306	1111	4977	10626	25999;26000;26001	25999		3	9606
GLPQSTISFDGIYANMR	0	1	Oxidation (M)	1884.904	0.90399771	1951	Q99700	ATXN2	Ataxin-2	yes	yes	0	1	0	10	0										1							18.915	18.915	2	0.0054176	15168	DP690-10	77.124	56.267			0.82628	1.0325	NaN	1	0	Median	31305000	17574000	13731000	5307	1951	4978	10627	26002	26002	2488	1	9606
GLPVLVELLQSETDK	1	0	Unmodified	1639.9033	0.90325265	69	O00192	ARVCF	Armadillo repeat protein deleted in velo-cardio-facial syndrome	yes	yes	0	0	0	11	0											1						23.642	23.642	2	1.1067E-09	21238	DP690-11	202.05	181.62			0.71117	0.87853	NaN	1	0	Median	14381000	9106600	5274700	5308	69	4979	10628	26003;26004;26005;26006	26004		4	9606
GLPVLVELLQSETDKVVR	1	1	Unmodified	1994.1412	0.14119151	69	O00192	ARVCF	Armadillo repeat protein deleted in velo-cardio-facial syndrome	yes	yes	0	0	1	11	0											1						23.091	23.091	3	8.3952E-07	20607	DP690-11	137.17	121.82			0.89802	1.0643	NaN	1	0	Median	11477000	5073300	6404200	5309	69	4980	10629	26007;26008	26007		2	9606
GLPVTCEVAPHHLFLSHDDLER	0	1	Unmodified	2541.2434	0.24344153	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		2															15.958	15.958	4;5	0.00012261	8909	DP690-2	103.41	103.41			1.1098	1.1578	NaN	1	0	Median	30748000	21444000	9303900	5310	602	4981	10630;10631	26009;26010;26011;26012;26013	26010		5	9606
GLPWSCSADEVMR	0	1	Unmodified	1506.6595	0.65953368	901	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	0	13	0													1				18.25	18.25	2	9.216E-05	13144	DP690-13	151.83	130.83			0.83681	1.0008	NaN	1	0	Median	96162000	56102000	40060000	5311	901	4982	10632	26014;26015	26015		2	9606
GLPWSCSADEVMR	0	1	Oxidation (M)	1522.6544	0.65444831	901	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	1	0	13	0													1				16.514	16.514	2	0.040698	10782	DP690-13	86.189	59.142			NaN	NaN	NaN	0	0	Median	75276000	75276000	0	5312	901	4982	10633	26016;26017	26016	1397	2	9606
GLPWSCSADEVQR	0	1	Unmodified	1503.6776	0.67762659	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	11.8	3.96					1								1	1	1		16.395	16.395	2	5.2647E-17	9788	DP690-5	194.94	162.52			0.78105	0.83973	4.7359	3	0	Plateau	805450000	445580000	359870000	5313	639	4983	10634;10635;10636;10637	26018;26019;26020;26021;26022;26023;26024;26025;26026;26027;26028;26029	26028		12	9606
GLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR	0	1	Unmodified	3750.7195	0.71951476	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	13	0													1				22.858	22.858	4	0.075797	18808	DP690-13	21.456	13.391			0.3544	0.4211	NaN	1	0	Median	5408700	3415100	1993700	5314	856	4984	10638	26030	26030		1	9606
GLQCGAPLSLVDLAGSER	0	1	Unmodified	1841.9305	0.93054681	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11	0											1						20.321	20.321	2	7.4536E-05	17197	DP690-11	148.41	97.154			0.75203	0.89704	NaN	1	0	Median	43725000	25298000	18426000	5315	2024	4985	10639	26031	26031		1	9606
GLQEFLDR	0	1	Unmodified	976.49779	0.49779495	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10.5	0.5										1	1						17.59	17.59	2	0.049737	13075	DP690-11	135.84	75.161			0.83369	0.92902	2.7237	2	0	Median	923780000	501260000	422520000	5316	272	4986	10640;10641	26032;26033	26033		0	9606
GLQEIEESLR	0	1	Unmodified	1172.6037	0.60371659	1743	Q8WV92	MITD1	MIT domain-containing protein 1	yes	yes	0	0	0	15	0															1		18.178	18.178	2	3.1145E-05	12900	DP690-15	189.7	135.15			0.88898	1.0281	NaN	1	0	Median	30572000	15720000	14851000	5317	1743	4987	10642	26034;26035;26036;26037	26037		4	9606
GLQFIQSTLPLKQEEYEAFLLK	2	0	Unmodified	2594.3996	0.39959105	2337	Q9UGR2	ZC3H7B	Zinc finger CCCH domain-containing protein 7B	yes	yes	0	0	1	11	0											2						21.573	21.573	3	0.0028149	18725	DP690-11	98.804	70.602			NaN	NaN	NaN	0	0	Median	25753000	14546000	11207000	5318	2337	4988	10643;10644	26038;26039	26038		2	9606
GLQKEEVVLLTHGDSVDK	2	0	Unmodified	1966.0371	0.037120373	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	1	4	0				1													14.914	14.914	3	3.9254E-05	8414	DP690-4	120.82	103.08			0.71979	0.74795	NaN	1	0	Median	29888000	17483000	12405000	5319	813	4989	10645	26040;26041;26042;26043	26041		4	9606
GLQSGVDIGVK	1	0	Unmodified	1071.5924	0.59242362	1934	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	10	4						1								1			14.609	14.609	2	0.0023686	7633	DP690-6	94.85	46.248			0.68015	0.7817	4.4871	2	0	Median	138230000	75888000	62341000	5320	1934	4990	10646;10647	26044;26045;26046;26047;26048;26049;26050	26049		7	9606
GLQTEAQVEK	1	0	Unmodified	1101.5666	0.5666028	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	11	0											1						11.126	11.126	2	0.0030435	3762	DP690-11	95.358	50.963			NaN	NaN	NaN	0	0	Median	75046000	39331000	35714000	5321	2302	4991	10648	26051	26051		1	9606
GLQTVHINENFAK	1	0	Unmodified	1469.7627	0.76267685	1226	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	12	0												2					14.441	14.441	2;3	0.022023	8267	DP690-12	69.846	69.846			0.87552	1.043	0.82308	2	0	Median	106110000	40530000	65577000	5322	1226	4992	10649;10650	26052;26053;26054	26054		3	9606
GLQVDLQSDGAAAEDIVASEQSLGQK	1	0	Unmodified	2628.2879	0.28786834	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	11	0											1						21.208	21.208	2	0.010456	18208	DP690-11	104.61	70.822			NaN	NaN	NaN	0	0	Median	0	0	0	5323	651	4993	10651	26055	26055		1	9606
GLSAEEVTR	0	1	Unmodified	960.48762	0.4876242	2398	Q9ULX9	MAFF	Transcription factor MafF	yes	yes	0	0	0	15	0															1		12.077	12.077	2	0.043028	4878	DP690-15	89.355	38.389			NaN	NaN	NaN	0	0	Median	7140000	0	7140000	5324	2398	4994	10652	26056;26057	26056		2	9606
GLSAHTHVELPYYSK	1	0	Unmodified	1700.8522	0.85222014	195	O43913	ORC5	Origin recognition complex subunit 5	yes	yes	0	0	0	13	0													1				14.148	14.148	3	0.00027159	7526	DP690-13	101.72	74.78			0.92825	1.0703	NaN	1	0	Median	82187000	42861000	39326000	5325	195	4995	10653	26058;26059;26060	26058		3	9606
GLSEAAGQTAQMLER	0	1	Oxidation (M)	1576.7515	0.75151981	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	1	0	10	0										1							15.565	15.565	2	0.00014949	10318	DP690-10	123.26	109.86			0.70862	0.87485	NaN	1	0	Median	124880000	76005000	48875000	5326	311	4996	10654	26061;26062;26063;26064;26065;26066	26065	319	6	9606
GLSEAAGQTAQMLER	0	1	Unmodified	1560.7566	0.75660519	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										1							17.374	17.374	2	2.4067E-05	13077	DP690-10	147.58	98.579			0.95684	1.1792	NaN	1	0	Median	138380000	74583000	63794000	5327	311	4996	10655	26067;26068	26067		2	9606
GLSEDTTEETLK	1	0	Unmodified	1321.6249	0.62490554	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11.5	0.5											1	1					13.706	13.706	2	0.00094602	7503	DP690-11	105.98	81.122			0.8268	0.99853	42.95	2	0	Median	67174000	41294000	25880000	5328	534	4997	10656;10657	26069;26070;26071;26072;26073	26069		5	9606
GLSEDTTEETLKESFDGSVR	1	1	Unmodified	2199.0179	0.017901073	534	P19338	NCL	Nucleolin	yes	yes	0	0	1	11.5	0.5											1	1					17.715	17.715	3	4.456E-16	13358	DP690-11	200.67	163.92			0.78021	0.93829	NaN	1	0	Median	72328000	44444000	27884000	5329	534	4998	10658;10659	26074;26075;26076	26074		3	9606
GLSEGHTFQVAEFIVDTR	0	1	Unmodified	2004.9905	0.99050453	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	5	3.56		1	1							1							19.588	19.588	3	1.4709E-05	16195	DP690-10	124.63	99.223			0.97673	1.0704	10.104	3	0	Median	182100000	95839000	86262000	5330	1270	4999	10660;10661;10662	26077;26078;26079;26080;26081;26082;26083;26084;26085	26078		9	9606
GLSGTAVLDLR	0	1	Unmodified	1100.619	0.61897272	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	4	0				1													17.422	17.422	2	0.00055992	11659	DP690-4	111.61	74.048			0.76033	0.88271	NaN	1	0	Median	16085000	8707100	7377700	5331	2116	5000	10663	26086;26087	26087		2	9606
GLSIEQLTTLAEK	1	0	Unmodified	1401.7715	0.7715102	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	3	0			1														20.169	20.169	2	0.00011153	15272	DP690-3	193.52	148.5			1.0056	1.067	NaN	1	0	Median	11013000	3839200	7173900	5332	708	5001	10664	26088;26089	26088		2	9606
GLSIHTFHGNFFVR	0	1	Unmodified	1630.8368	0.83684484	327	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	3	0			1														16.515	16.515	3	0.062979	10704	DP690-3	42.797	24.997			0.72561	0.83201	NaN	1	0	Median	15493000	9086600	6406200	5333	327	5002	10665	26090	26090		1	9606
GLSLGFLEK	1	0	Unmodified	962.54368	0.54368251	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								19.111	19.111	2	0.0065795	13763	DP690-9	93.429	24.045			1.0242	1.3038	NaN	1	0	Median	8118300	4202600	3915700	5334	2217	5003	10666	26091;26092	26091		2	9606
GLSLQHIGRPHSGIDDCK	1	1	Unmodified	1988.985	0.985042	177	O43414	ERI3	ERI1 exoribonuclease 3	yes	yes	0	0	1	11	4							1								1		12.388	12.388	4	0.0041466	5229	DP690-15	65.298	49.455			0.78267	0.83791	2.8098	2	0	Median	219240000	120930000	98304000	5335	177	5004	10667;10668	26093;26094;26095;26096;26097;26098	26093		6	9606
GLSLVDKENTPPALSGTR	1	1	Unmodified	1853.9847	0.98469087	635	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	1	6	0						1											15.271	15.271	3	1.5838E-06	8457	DP690-6	130.64	114.11			0.87602	0.98176	NaN	1	0	Median	12108000	6943200	5164900	5336	635	5005	10669	26099;26100	26099		2	9606
GLSQEGTGPPTSAGEGHSR	0	1	Unmodified	1823.8398	0.83981755	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	5	4	1								1								10.532	10.532	3	7.529E-07	2767	DP690-9	135.69	115.6			0.75791	0.83116	3.4729	2	0	Median	31069000	17459000	13610000	5337	1453	5006	10670;10671	26101;26102;26103;26104	26102		4	9606
GLSQSALPYR	0	1	Unmodified	1090.5771	0.57710791	975	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	12	4								1								1	14.354	14.354	2	0.00012307	7904	DP690-16	140.09	59.86			0.87847	0.9622	3.6093	2	0	Median	201440000	103880000	97565000	5338	975	5007	10672;10673	26105;26106;26107;26108;26109	26105		5	9606
GLSQSALPYRR	0	2	Unmodified	1246.6782	0.67821894	975	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	16	0																1	12.508	12.508	3	0.0033871	5298	DP690-16	102.62	59.109			NaN	NaN	NaN	0	0	Median	32376000	0	32376000	5339	975	5008	10674	26110;26111	26111		2	9606
GLSSLLCNFTK	1	0	Unmodified	1238.6329	0.63290823	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							20.165	20.165	2	2.576E-06	15071	DP690-9	209.73	168.28			0.82283	0.98121	5.1527	2	0	Median	241020000	131890000	109130000	5340	1046	5009	10675;10676	26112;26113;26114;26115;26116;26117;26118;26119;26120;26121	26121		10	9606
GLSSLLYGSIPK	1	0	Unmodified	1233.6969	0.69688869	869	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	14.5	0.5														1	1		19.938	19.938	2	0.00023494	15124	DP690-15	142.98	119.63			0.71172	0.82967	2.396	2	0	Median	203370000	115330000	88048000	5341	869	5010	10677;10678	26122;26123;26124;26125;26126;26127	26126		6	9606
GLSTESILIPR	0	1	Unmodified	1184.6765	0.6764876	631	Q5VSP4;P31025	LCN1P1;LCN1	Putative lipocalin 1-like protein 1;Lipocalin-1	yes	no	0	0	0	6	2				1				1									17.854	17.854	2	0.00019841	11261	DP690-8	153.08	79.823			NaN	NaN	NaN	0	0	Median	5249800	5249800	0	5342	631	5011	10679;10680	26128;26129;26130;26131	26131		4	9606
GLSTFPGAEHCLR	0	1	Unmodified	1443.6929	0.69288272	1906	Q96P11;Q3KNT7;Q63ZY6	NSUN5;NSUN5P1;NSUN5P2	Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative NOL1/NOP2/Sun domain family member 5B;Putative methyltransferase NSUN5C	yes	no	0	0	0	13	0													1				14.065	14.065	3	0.0012734	7448	DP690-13	108.98	88.748			0.87896	1.0412	NaN	1	0	Median	115560000	58700000	56857000	5343	1906	5012	10681	26132;26133;26134;26135	26135		4	9606
GLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR	0	1	Unmodified	3518.6174	0.61743295	355	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	0	0	0	8	0								1									16.671	16.671	6	6.7952E-06	9924	DP690-8	69.576	62.105			0.86104	1.0231	NaN	1	0	Median	4656100	2668100	1987900	5344	355	5013	10682	26136	26136		1	9606
GLTEQEVETILDK	1	0	Unmodified	1473.7563	0.75625407	1229	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	11	0											1						19.737	19.737	2	0.0013583	16234	DP690-11	98.898	83.638			1.0394	1.2556	NaN	1	0	Median	47302000	21064000	26239000	5345	1229	5014	10683	26137	26137		1	9606
GLTFQEVENFFTFLK	1	0	Unmodified	1818.9192	0.91923707	1968	Q9BPX6	MICU1	Calcium uptake protein 1, mitochondrial	yes	yes	0	0	0	13	0													1				26.196	26.196	2	0.015091	22546	DP690-13	99.215	69.912			NaN	NaN	NaN	0	0	Median	379770	379770	0	5346	1968	5015	10684	26138	26138		1	9606
GLTPPASYNLDDDQAAWENELQK	1	0	Unmodified	2574.1874	0.18742602	1596	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	11	0											1						20.099	20.099	2	0.0019166	16704	DP690-11	102.64	72.529			NaN	NaN	NaN	0	0	Median	0	0	0	5347	1596	5016	10685	26139	26139		1	9606
GLTPSQIGVILR	0	1	Unmodified	1252.7503	0.75032125	975	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	14	3.46								1								3	18.866	18.866	2	6.6061E-05	13358	DP690-16	143.7	112.21			1.1877	1.3802	39.207	2	0	Median	45424000	23775000	21649000	5348	975	5017	10686;10687;10688;10689	26140;26141;26142;26143;26144;26145;26146;26147;26148;26149	26143		10	9606
GLTSVINQK	1	0	Unmodified	958.54475	0.54474515	400	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	6	0						1											13.534	13.534	2	0.02239	6354	DP690-6	77.058	45.768			1.6777	1.8799	NaN	1	0	Median	28812000	10801000	18011000	5349	400	5018	10690	26150;26151	26151		2	9606
GLTTTGNSSLNSTSNTK	1	0	Unmodified	1681.8119	0.81187146	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	10.6	1.32									3		2	3					11.629	11.629	2	5.1425000000000005E-33	4524	DP690-11	307.03	277.26			0.82625	1.0019	10.562	3	0	Plateau	126280000	75183000	51102000	5350	1889	5019	10691;10692;10693;10694;10695;10696;10697;10698	26152;26153;26154;26155;26156;26157;26158;26159;26160;26161;26162;26163;26164;26165	26156		14	9606
GLTVDSILQTDDATLGK	1	0	Unmodified	1745.9047	0.90470922	1047	P78549	NTHL1	Endonuclease III-like protein 1	yes	yes	0	0	0	14	0														1			20.221	20.221	2	5.8785E-07	15903	DP690-14	178.15	126.42			0.72959	0.88798	NaN	1	0	Median	38102000	22532000	15570000	5351	1047	5020	10699	26166;26167	26166		2	9606
GLVASLISVK	1	0	Unmodified	985.61718	0.61718181	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	10.5	0.5										1	1						18.551	18.551	2	0.010652	14512	DP690-11	82.75	52.064			0.79353	0.97945	NaN	1	0	Median	17227000	9397500	7829600	5352	317	5021	10700;10701	26168;26169;26170;26171	26169		4	9606
GLVAVITGGASGLGLATAER	0	1	Unmodified	1812.0105	0.010511692	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	11	4							1								1		21.199	21.199	2	2.2989E-17	15989	DP690-7	198.29	198.29			0.82728	0.96028	0.36298	2	0	Median	19034000	11223000	7810400	5353	1953	5022	10702;10703	26172;26173;26174;26175;26176;26177;26178;26179;26180;26181;26182	26181		11	9606
GLVEPVDVVDNADGTQTVNYVPSR	0	1	Unmodified	2543.2504	0.25036063	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.83	3.89		1							1	1	1		1	1			19.022	19.022	2	4.3883E-61	15310	DP690-10	293.38	266.12			0.69806	0.73074	18.62	3	0	Median	1220200000	695140000	525050000	5354	549	5023	10704;10705;10706;10707;10708;10709	26183;26184;26185;26186;26187;26188;26189;26190;26191;26192;26193;26194;26195;26196;26197;26198;26199;26200;26201;26202;26203	26186		21	9606
GLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVK	1	0	Oxidation (M)	3504.6719	0.67187909	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	10	0										1							18.055	18.055	3	8.9905E-09	13984	DP690-10	114.68	114.68			0.65218	0.80543	NaN	1	0	Median	134600000	81516000	53080000	5355	250	5024	10710	26204;26205	26205	242	2	9606
GLVGEIIKR	1	1	Unmodified	983.61277	0.61276513	501;562	P15531;P22392	NME1;NME2	Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B	no	no	0	0	1	8	0								1									14.371	14.371	2	0.010049	7352	DP690-8	101.33	56.932			0.91332	1.0619	NaN	1	0	Median	42769000	22619000	20150000	5356	501;562	5025	10711	26206;26207	26207		2	9606
GLVGPELHDR	0	1	Unmodified	1091.5724	0.57235688	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.2	0.4									4	1							12.342	12.342	2;3	0.0014445	4995	DP690-9	123.63	61.861			0.7532	0.90401	NaN	1	0	Median	114590000	97346000	17241000	5357	1319	5026	10712;10713;10714;10715;10716	26208;26209;26210;26211;26212;26213;26214;26215;26216;26217	26217		10	9606
GLVLLRPPASLQYR	0	2	Unmodified	1581.9355	0.93549626	1943	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	1	11	0											1						17.622	17.622	3	0.020441	13221	DP690-11	57.52	57.52			0.5872	0.72386	NaN	1	0	Median	52651000	36189000	16462000	5358	1943	5027	10717	26218	26218		1	9606
GLVMVKPGSIKPHQK	3	0	Oxidation (M)	1633.9338	0.9337817	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	1	2	13	0													1				10.353	10.353	3	0.0084186	2632	DP690-13	66.708	57.388			0.70673	0.74031	NaN	1	0	Median	77900000	44765000	33135000	5359	793	5028	10718	26219	26219	1201	1	9606
GLVMVKPGSIKPHQK	3	0	Unmodified	1617.9389	0.93886707	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	2	13	0													2				10.719	10.719	3	0.0066626	3068	DP690-13	115.37	79.716			NaN	NaN	NaN	0	0	Median	0	0	0	5360	793	5028	10719;10720	26220;26221	26221		2	9606
GLVNLQSGAPKPEENPSLNIQFK	2	0	Unmodified	2479.3071	0.30708764	2447	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	1	13	0													1				17.894	17.894	3	2.9535E-24	12656	DP690-13	204.51	190.63			0.69211	0.77408	NaN	1	0	Median	77941000	45047000	32894000	5361	2447	5029	10721	26222;26223;26224;26225	26222		4	9606
GLVQALQTK	1	0	Unmodified	956.56548	0.56548059	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															14.649	14.649	2	0.00075779	7210	DP690-2	135.77	21.269			0.88892	0.90802	NaN	1	0	Median	130580000	70559000	60023000	5362	789	5030	10722	26226;26227	26227		2	9606
GLVSSDELAKDVTGAEALLER	1	1	Unmodified	2172.1274	0.12739194	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							22.111	22.111	3	0.00062236	19561	DP690-10	123.43	93.222			NaN	NaN	NaN	0	0	Median	0	0	0	5363	1236	5031	10723	26228	26228		1	9606
GLVYSSNFQNVK	1	0	Unmodified	1354.6881	0.68811492	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	13	0													1				15.495	15.495	2	0.00017382	9499	DP690-13	141.48	81.549			0.83024	0.95778	NaN	1	0	Median	81182000	43820000	37361000	5364	1906	5032	10724	26229;26230;26231;26232	26229		4	9606
GLWVPQHQSIQEYWK	1	0	Unmodified	1897.9475	0.9475175	1629	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	yes	yes	0	0	0	14	0														1			17.999	17.999	3	0.00032886	12935	DP690-14	98.592	72.647			1.0094	1.2207	NaN	1	0	Median	79231000	44338000	34893000	5365	1629	5033	10725	26233;26234	26233		2	9606
GLYAAAAGVLAGVESR	0	1	Unmodified	1503.8045	0.80454166	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	13	0													1				20.958	20.958	2	3.2262E-06	16757	DP690-13	138.42	138.42			0.89521	1.094	NaN	1	0	Median	36717000	18766000	17951000	5366	1906	5034	10726	26235;26236	26236		2	9606
GLYAAAAGVLAGVESR	0	1	Acetyl (Protein N-term)	1545.8151	0.81510635	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	1	0	0	13	0													3				26.521	26.521	2	0.0060878	22825	DP690-13	130.56	86.263			NaN	NaN	NaN	0	0	Median	0	0	0	5367	1906	5034	10727;10728;10729	26237;26238;26239	26237		3	9606
GLYDGPVCEVSVTPK	1	0	Unmodified	1619.7865	0.78650834	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	6.67	3.77				2								1					16.989	16.989	2	0.00046048	11052	DP690-4	140.78	81.713			0.67448	0.80337	NaN	1	0	Median	54370000	24704000	29667000	5368	1359	5035	10730;10731;10732	26240;26241;26242;26243;26244;26245;26246	26244		7	9606
GLYQGFNVSVQGIIIYR	0	1	Unmodified	1926.0363	0.036332512	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	no	no	0	0	0	9	0									1								21.707	21.707	2	0.00023897	16862	DP690-9	113.24	81.643			0.88435	1.1057	NaN	1	0	Median	4234800	2200600	2034200	5369	381	5036	10733	26247	26247		1	9606
GMAAAGNYAWVNR	0	1	Oxidation (M)	1395.6354	0.63536784	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	1	0	8	4				1								1					14.533	14.533	2	0.00022198	8381	DP690-12	166.52	137.35			1.0805	1.2673	6.8795	2	0	Median	85722000	44921000	40800000	5370	2475	5037	10734;10735	26248;26249;26250;26251;26252;26253;26254;26255	26250	2915	8	9606
GMAFLHTLEPLIPR	0	1	Oxidation (M)	1609.865	0.86503343	1206	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	1	0	13	0													1				18.977	18.977	3	0.00016689	14069	DP690-13	109.15	95.106			0.78001	0.95276	NaN	1	0	Median	37739000	24145000	13594000	5371	1206	5038	10736	26256;26257;26258;26259	26257	1856	4	9606
GMATCFAYGQTGSGK	1	0	Unmodified	1534.6544	0.65444831	62	O00139	KIF2A	Kinesin-like protein KIF2A	no	no	0	0	0	11	0											1						14.774	14.774	2	0.00097396	9078	DP690-11	98.407	79.735			0.80755	0.978	NaN	1	0	Median	43389000	22708000	20682000	5372	62	5039	10737	26260;26261	26260		2	9606
GMATCFAYGQTGSGK	1	0	Oxidation (M)	1550.6494	0.64936293	62	O00139	KIF2A	Kinesin-like protein KIF2A	no	no	0	1	0	11	0											4						13.249	13.249	2	0.00078959	6682	DP690-11	160.72	136.45			NaN	NaN	NaN	0	0	Median	6198700	0	6198700	5373	62	5039	10738;10739;10740;10741	26262;26263;26264;26265	26263	67	4	9606
GMEFEGAIIALFHLLATR	0	1	Oxidation (M)	2004.0503	0.050268017	951	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	1	0	10	0.707									1	2	1						26.624	26.624	3	0.00069311	24926	DP690-10	85.636	85.636			0.86541	1.0013	8.5544	4	0	Median	6710900	3379000	3331900	5374	951	5040	10742;10743;10744;10745	26266;26267;26268;26269;26270	26268	1469	5	9606
GMGGAFVLVLYDELKK	2	0	Unmodified	1738.9328	0.93277864	473	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	1	12.2	2.23									1	1				3			22.258	22.258	2;3	8.5665E-05	18073	DP690-14	111.66	0			0.85693	0.95904	20.968	5	0	Median	134770000	73412000	61355000	5375	473	5041	10746;10747;10748;10749;10750	26271;26272;26273;26274;26275;26276;26277;26278;26279;26280;26281	26274		11	9606
GMGPGTPAGYGR	0	1	Oxidation (M)	1135.508	0.50804206	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	0	11	0											1						10.84	10.84	2	0.014417	3362	DP690-11	76.17	56.139			0.72085	0.86655	NaN	1	0	Median	70138000	40604000	29534000	5376	566	5042	10751	26282	26282	746	1	9606
GMGTAAPAAMDPVVGQAK	1	0	2 Oxidation (M)	1702.8018	0.80184082	2093	Q9H0W8	SMG9	Protein SMG9	yes	yes	0	2	0	4	0				1													12.251	12.251	2	0.00068175	4946	DP690-4	102.73	75.76			1.3747	1.4706	NaN	1	0	Median	2904600	1173300	1731300	5377	2093	5043	10752	26283;26284;26285;26286	26285	2609;2610	4	9606
GMGTVEGGDQSNPK	1	0	Unmodified	1375.6038	0.60379294	1209	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	11	0											1						10.598	10.598	2	0.00013119	2944	DP690-11	152.69	121.32			NaN	NaN	NaN	0	0	Median	9014200	9014200	0	5378	1209	5044	10753	26287	26287		1	9606
GMIDGSTPTITPNPNFR	0	1	Oxidation (M)	1832.8727	0.87269758	2217	Q9NU22	MDN1	Midasin	yes	yes	0	1	0	9	0									1								16.204	16.204	2	0.00035297	10065	DP690-9	114.82	97.682			0.78088	0.97832	NaN	1	0	Median	7685100	5080100	2605100	5379	2217	5045	10754	26288;26289;26290	26289	2695	3	9606
GMLLGVFDGHAGCACSQAVSER	0	1	Oxidation (M)	2337.03	0.030019635	2291	Q9P0J1	PDP1	[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial	yes	yes	0	1	0	13	0													1				16.304	16.304	3	0.043669	10564	DP690-13	62.19	47.421			NaN	NaN	NaN	0	0	Median	14069000	14069000	0	5380	2291	5046	10755	26291	26291	2743	1	9606
GMMDEEGNQFVAYFLPVEETLK	1	0	2 Oxidation (M)	2578.1607	0.16074226	1666	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	2	0	12	0												1					23.706	23.706	2	0.00017961	20287	DP690-12	109.48	85.544			NaN	NaN	NaN	0	0	Median	780100	780100	0	5381	1666	5047	10756	26292;26293;26294	26293	2280;2281	3	9606
GMPETTQPDKQCGQVAAAAAAQPPASHGPER	1	1	Oxidation (M)	3173.4618	0.46184351	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	1	1	4	0				1													12.073	12.073	4	5.5962E-05	4687	DP690-4	62.993	62.993			0.62785	0.71608	NaN	1	0	Median	9589300	6247600	3341600	5382	342	5048	10757	26295;26296;26297;26298	26295	352	4	9606
GMSLNLEPDNVGVVVFGNDK	1	0	Oxidation (M)	2119.0256	0.025569409	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	12.5	0.5												1	1				20.388	20.388	2	2.4216E-18	15881	DP690-13	212.43	192.65			0.63434	0.7481	7.5942	2	0	Median	70108000	40914000	29194000	5383	585	5049	10758;10759	26299;26300;26301;26302;26303;26304;26305;26306;26307;26308;26309	26305	772	11	9606
GMSLNLEPDNVGVVVFGNDK	1	0	Unmodified	2103.0307	0.030654786	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	13	0													1				21.506	21.506	2	5.6888E-05	17355	DP690-13	131.86	90.216			NaN	NaN	NaN	0	0	Median	1802400	1802400	0	5384	585	5049	10760	26310;26311	26310		2	9606
GMSVSDLADKLSTDDLNSLIAHAHR	1	1	Oxidation (M)	2681.3079	0.30789228	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	1	1	11	0											1						19.149	19.149	5	0.00392	15405	DP690-11	55.302	36.899			1.2151	1.4018	NaN	1	0	Median	121050000	65690000	55364000	5385	1375	5050	10761	26312;26313	26312	2120	2	9606
GMSVSDLADKLSTDDLNSLIAHAHR	1	1	Unmodified	2665.313	0.31297766	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	1	11	0											2						20.132	20.132	4;5	0.015646	16750	DP690-11	76.049	62.426			0.90832	1.0287	5.0388	2	0	Median	327560000	156160000	171400000	5386	1375	5050	10762;10763	26314;26315	26315		1	9606
GMSVYGLGR	0	1	Oxidation (M)	954.4593	0.45930096	1330	Q15417	CNN3	Calponin-3	yes	yes	0	1	0	14	0														1			13.448	13.448	2	0.0011973	6713	DP690-14	138.37	116.6			0.80708	0.89834	NaN	1	0	Median	429230000	230330000	198900000	5387	1330	5051	10764	26316;26317;26318;26319	26318	2073	4	9606
GMSVYGLGR	0	1	Unmodified	938.46439	0.46438634	1330	Q15417	CNN3	Calponin-3	yes	yes	0	0	0	10	4						1								1			15.583	15.583	2	0.00023651	9753	DP690-14	163.34	133.53			0.92512	1.0314	12.273	2	0	Median	461560000	243750000	217820000	5388	1330	5051	10765;10766	26320;26321;26322;26323;26324;26325	26322		6	9606
GMTENEVEDR	0	1	Unmodified	1178.4874	0.4873662	1228	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	3	0			1														11.335	11.335	2	0.0095843	3816	DP690-3	109.48	68.049			NaN	NaN	NaN	0	0	Median	5180100	0	5180100	5389	1228	5052	10767	26326;26327	26327		2	9606
GMTLVTPLQLLLFASK	1	0	Oxidation (M)	1746.9954	0.9953789	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	1	0	10.4	0.904									1	3	2	1					25.701	25.701	2	6.9927E-12	23483	DP690-10	199.4	190.69			0.88195	1.0575	5.655	6	0	Median	114610000	63304000	51301000	5390	1137	5053	10768;10769;10770;10771;10772;10773;10774	26328;26329;26330;26331;26332;26333;26334;26335;26336;26337;26338;26339;26340;26341;26342;26343;26344;26345;26346;26347;26348;26349;26350	26332	1757	22	9606
GMTLVTPLQLLLFASK	1	0	Unmodified	1731.0005	0.0004642775	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	10.7	0.471										1	2						26.456	26.456	2	6.873E-07	24332	DP690-11	145.29	130.51			0.7993	0.98232	9.798	3	0	Median	19397000	10911000	8485500	5391	1137	5053	10775;10776;10777	26351;26352;26353;26354;26355;26356;26357;26358;26359;26360;26361	26358		11	9606
GMTSESDSIGLTPGEK	1	0	Unmodified	1607.7349	0.7348667	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	10	0										2							14.914	14.914	2	0.00045031	9424	DP690-10	155.86	115.13			NaN	NaN	NaN	0	0	Median	0	0	0	5392	858	5054	10778;10779	26362;26363	26363		2	9606
GMTTVDDFFQGTK	1	0	Oxidation (M)	1461.6446	0.64459513	1260	Q14195	DPYSL3	Dihydropyrimidinase-related protein 3	yes	yes	0	1	0	4	0				1													17.506	17.506	2	9.5332E-05	11780	DP690-4	175.65	156.29			0.75669	0.81695	NaN	1	0	Median	31403000	16981000	14423000	5393	1260	5055	10780	26364;26365;26366;26367	26367	1900	4	9606
GMTTVDDFFQGTK	1	0	Unmodified	1445.6497	0.6496805	1260	Q14195	DPYSL3	Dihydropyrimidinase-related protein 3	yes	yes	0	0	0	4	0				1													18.929	18.929	2	0.0043254	13459	DP690-4	86.189	61.679			0.96292	1.0371	NaN	1	0	Median	6419600	3177700	3241900	5394	1260	5055	10781	26368;26369;26370;26371	26368		4	9606
GMYDGPVFDLTTTPK	1	0	Oxidation (M)	1656.7705	0.77052392	1260	Q14195	DPYSL3	Dihydropyrimidinase-related protein 3	yes	yes	0	1	0	4	0				1													18.638	18.638	2	0.00038452	13142	DP690-4	116.01	80.237			0.66125	0.72326	NaN	1	0	Median	17357000	10252000	7105400	5395	1260	5056	10782	26372;26373;26374	26373	1901	3	9606
GNAEGSSDEEGKLVIDEPAKEK	3	0	Unmodified	2301.0972	0.097214027	844	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	2	6	0						1											12.5	12.5	3	0.00044828	5034	DP690-6	93.92	93.92			0.53455	0.53435	NaN	1	0	Median	5421400	3214500	2206900	5396	844	5057	10783	26375;26376	26375		2	9606
GNAGQSNYGFANSAMER	0	1	Oxidation (M)	1788.7486	0.7485597	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	2.75	0.829		2	1	1													13.643	13.643	2	7.0369E-09	5597	DP690-2	181.67	153.47			0.90841	0.93513	11.162	4	0	Linear	112450000	59370000	53078000	5397	789	5058	10784;10785;10786;10787	26377;26378;26379;26380;26381;26382;26383;26384;26385;26386;26387;26388;26389;26390;26391	26380	1180	15	9606
GNAGQSNYGFANSAMER	0	1	Unmodified	1772.7536	0.75364508	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														14.799	14.799	2	1.3349E-24	7457	DP690-2	276.71	221.45			0.89293	0.9315	NaN	1	0	Median	22462000	9466700	12995000	5398	789	5058	10788;10789	26392;26393;26394;26395;26396;26397	26393		6	9606
GNAIYNLLPDIISR	0	1	Unmodified	1557.8515	0.85149185	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	6.5	3.5			1							1							22.558	22.558	2	0.001019	20147	DP690-10	100.56	100.56			0.88045	1.0323	23.872	2	0	Median	33382000	19113000	14269000	5399	1311	5059	10790;10791	26398;26399;26400;26401;26402	26398		5	9606
GNAMVEEGHFAAEDVK	1	0	Oxidation (M)	1718.757	0.75699912	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										2							12.812	12.812	2;3	0.0028731	6339	DP690-10	73.802	48.608			0.5209	0.64313	NaN	1	0	Median	125050000	82362000	42690000	5400	1236	5060	10792;10793	26403;26404	26403	1890	2	9606
GNDTPLALESTNTEK	1	0	Unmodified	1588.758	0.75804498	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															14.661	14.661	2	0.00025199	7283	DP690-2	145.09	98.289			NaN	NaN	NaN	0	0	Median	2183300	0	2183300	5401	1555	5061	10794	26405;26406	26406		2	9606
GNDTPLALESTNTEKETSLEETK	2	0	Unmodified	2506.1922	0.19223662	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	1	2	0		1															15.346	15.346	3	5.9852E-05	8175	DP690-2	121.14	105.74			1.1799	1.2249	NaN	1	0	Median	5431100	2283400	3147700	5402	1555	5062	10795	26407;26408;26409	26408		3	9606
GNEEAQIFRPLK	1	1	Unmodified	1400.7412	0.74121312	1314	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	1	11	0											1						14.904	14.904	2	0.00095266	9236	DP690-11	120.27	77.934			0.84882	1.0389	NaN	1	0	Median	51928000	26465000	25463000	5403	1314	5063	10796	26410	26410		1	9606
GNEFEDYCLKR	1	1	Unmodified	1429.6296	0.62961376	589	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	1	13	0													1				14.257	14.257	3	0.050471	7713	DP690-13	45.764	25.025			0.93767	1.1538	NaN	1	0	Median	26844000	12722000	14122000	5404	589	5064	10797	26411;26412	26411		2	9606
GNEGTLESINEK	1	0	Unmodified	1289.6099	0.60992418	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	13	0													1				12.914	12.914	2	1.6298E-05	5808	DP690-13	191.4	136.03			0.87348	0.9695	NaN	1	0	Median	220730000	113130000	107590000	5405	229	5065	10798	26413;26414;26415;26416;26417;26418;26419	26417		7	9606
GNEIVLSAGSTPR	0	1	Unmodified	1299.6783	0.67827852	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								14.338	14.338	2	2.7562E-05	7593	DP690-9	127.83	93.625			0.71088	0.84707	NaN	1	0	Median	40857000	23615000	17242000	5406	1264	5066	10799	26420;26421	26420		2	9606
GNFGGSFAGSFGGAGGHAPGVAR	0	1	Unmodified	2033.9456	0.94562002	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11.3	0.471											2	1					15.941	15.941	2;3	2.4064E-32	10855	DP690-11	209.53	164.92			0.67842	0.75226	2.3308	2	0	Median	670770000	381500000	289270000	5407	849	5067	10800;10801;10802	26422;26423;26424;26425;26426;26427	26425		5	9606
GNFNYIEFTR	0	1	Unmodified	1259.5935	0.59348625	123	O14950;P19105	MYL12B;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A	yes	no	0	0	0	12	4								1								1	18.062	18.062	2	1.963E-05	12379	DP690-16	179.37	147.95			1.0133	1.152	21.611	2	0	Median	57605000	30214000	27391000	5408	123	5068	10803;10804	26428;26429;26430;26431;26432;26433;26434;26435;26436;26437	26433		10	9606
GNHAAFQADVSEAR	0	1	Unmodified	1471.6804	0.68040378	1770	Q92506	HSD17B8	Estradiol 17-beta-dehydrogenase 8	yes	yes	0	0	0	15	0															1		11.818	11.818	3	0.0072949	4516	DP690-15	60.549	39.709			0.94768	1.0976	NaN	1	0	Median	16165000	8657900	7507400	5409	1770	5069	10805	26438;26439	26438		2	9606
GNHETDNMNQIYGFEGEVK	1	0	Oxidation (M)	2196.9382	0.93821096	870	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	1	0	4	0				1													14.966	14.966	3	0.0022563	8546	DP690-4	72.383	58.511			0.81319	0.88521	NaN	1	0	Median	21580000	13001000	8578500	5410	870	5070	10806	26440;26441;26442	26441	1314	3	9606
GNIDGNVSCSENLVANTAR	0	1	Unmodified	1989.9174	0.91741594	1777	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	10	0										1							15.932	15.932	2	8.3389E-17	10917	DP690-10	196.67	161.15			0.9012	1.1287	NaN	1	0	Median	46027000	23199000	22828000	5411	1777	5071	10807	26443	26443		1	9606
GNKPWISLPR	1	1	Unmodified	1166.656	0.65602693	986	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	1	15	0															1		15.25	15.25	3	0.071905	9077	DP690-15	58.63	31.658			NaN	NaN	NaN	0	0	Median	2878200	2878200	0	5412	986	5072	10808	26444	26444		1	9606
GNLANVIR	0	1	Unmodified	855.49265	0.49265	381;473	P05141;Q9H0C2;P12236	SLC25A5;SLC25A31;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	10	0										1							13.75	13.75	2	0.053506	7570	DP690-10	114.02	75.217			0.908	0.94817	NaN	1	0	Median	1225100000	621430000	603700000	5413	381;473	5073	10809	26445	26445		0	9606
GNLEVLLFTIQSK	1	0	Unmodified	1460.8239	0.82388012	1080;130	Q01082;O15020	SPTBN1;SPTBN2	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2	no	no	0	0	0	10	0										2							22.284	22.284	2	9.1424E-05	19832	DP690-10	124.12	106.06			1.3698	1.6617	NaN	1	0	Median	30029000	17545000	12484000	5414	1080;130	5074	10810;10811	26446;26447;26448;26449;26450	26448		5	9606
GNLGAGNGNLQGPR	0	1	Unmodified	1323.6644	0.66435979	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											1						12.037	12.037	2	5.5323E-09	5032	DP690-11	196.52	174.43			0.70193	0.84692	NaN	1	0	Median	90163000	49740000	40423000	5415	735	5075	10812	26451;26452;26453;26454;26455;26456;26457	26454		7	9606
GNLLHFPSSQGEEEKEKLEGDHTIR	2	1	Unmodified	2849.3944	0.3943991	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	2	10	0										1							14.51	14.51	5	0.014218	8848	DP690-10	48.198	33.254			0.64868	0.74022	NaN	1	0	Median	379210000	217430000	161770000	5416	1167	5076	10813	26458;26459;26460	26458		3	9606
GNLVYIIDFGLAK	1	0	Unmodified	1421.7919	0.79185171	783;798	P49674;P48730	CSNK1E;CSNK1D	Casein kinase I isoform epsilon;Casein kinase I isoform delta	no	no	0	0	0	13	0													1				22.418	22.418	2	0.0067175	18413	DP690-13	79.659	60			0.72221	0.82061	NaN	1	0	Median	8445100	4606300	3838700	5417	798;783	5077	10814	26461;26462;26463;26464	26461		4	9606
GNLYSFGCPEYGQLGHNSDGK	1	0	Unmodified	2298.9964	0.99639455	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	11.5	2.75				1					1	1	1	3	3	1	1		18.235	18.235	2;3	2.1108E-83	11201	DP690-12	365.06	347.94			0.81542	0.94843	11.848	10	0	Median	3397399999.9999995	1894299999.9999998	1503099999.9999998	5418	2298	5078	10815;10816;10817;10818;10819;10820;10821;10822;10823;10824;10825;10826	26465;26466;26467;26468;26469;26470;26471;26472;26473;26474;26475;26476;26477;26478;26479;26480;26481;26482;26483;26484;26485;26486;26487;26488;26489;26490;26491;26492;26493;26494;26495;26496;26497;26498;26499;26500	26474		36	9606
GNSLTLIDLPGHESLR	0	1	Unmodified	1720.9108	0.91079765	2502	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	15	0															2		17.784	17.784	2;3	1.4612E-08	12392	DP690-15	223.22	198.94			0.80306	0.91124	6.2875	2	0	Median	103940000	55371000	48573000	5419	2502	5079	10827;10828	26501;26502;26503;26504;26505	26504		5	9606
GNTAAQMAQILSFNK	1	0	Oxidation (M)	1608.793	0.7929907	661	P35237	SERPINB6	Serpin B6	yes	yes	0	1	0	6	0						1											16.169	16.169	2	6.7068E-07	9485	DP690-6	191.48	172.02			0.81864	0.93543	NaN	1	0	Median	15363000	8036900	7326200	5420	661	5080	10829	26506;26507;26508;26509;26510	26507	930	5	9606
GNTAAYLLYAFTR	0	1	Unmodified	1459.746	0.74596415	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	8	4				1								1					22.152	22.152	2	1.2809E-05	18458	DP690-12	185.99	162.67			0.99004	1.1632	22.918	2	0	Median	32814000	17942000	14873000	5421	886	5081	10830;10831	26511;26512;26513;26514	26511		4	9606
GNTQATSHSFDVR	0	1	Unmodified	1418.6539	0.65385468	1429	Q5SWX8	ODR4	Protein odr-4 homolog	yes	yes	0	0	0	12.5	0.5												1	1				10.773	10.773	3	0.0017103	3136	DP690-13	112.02	72.239			0.81927	0.99238	NaN	1	0	Median	60668000	31239000	29429000	5422	1429	5082	10832;10833	26515;26516;26517	26516		3	9606
GNVEADAFR	0	1	Unmodified	977.45666	0.45665842	1693	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	6	0						2											12.973	12.973	2	0.034173	5639	DP690-6	113.41	67.694			NaN	NaN	NaN	0	0	Median	0	0	0	5423	1693	5083	10834;10835	26518;26519	26518		2	9606
GNVFSSPTAAGTPNK	1	0	Unmodified	1446.7103	0.71030693	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	11	0											1						13.557	13.557	2	1.2815E-05	7303	DP690-11	129.74	111.85			0.67227	0.78064	NaN	1	0	Median	146670000	81473000	65197000	5424	1119	5084	10836	26520	26520		1	9606
GNVFSSPTAAGTPNKETAGLK	2	0	Unmodified	2046.0382	0.038183005	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	1	11.2	0.433											3	1					13.924	13.924	2;3	6.9847E-36	7828	DP690-11	217.39	196.54			0.67285	0.80475	5.8804	3	0	Median	400050000	229550000	170500000	5425	1119	5085	10837;10838;10839;10840	26521;26522;26523;26524;26525;26526;26527;26528;26529;26530;26531;26532;26533	26527		13	9606
GNVGFVFTK	1	0	Unmodified	967.51272	0.51271674	385	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	10	4						1								1			16.318	16.318	2	0.0084999	10672	DP690-14	91.069	57.806			0.96157	1.1065	5.9819	2	0	Median	217050000	116130000	100910000	5426	385	5086	10841;10842	26534;26535;26536;26537;26538;26539;26540;26541	26536		8	9606
GNVGVVLFNFGK	1	0	Unmodified	1249.6819	0.68190733	649	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	8	0								1									20.286	20.286	2	0.00011845	13846	DP690-8	175.91	160.97			0.79436	0.87149	NaN	1	0	Median	24556000	13894000	10661000	5427	649	5087	10843	26542;26543;26544;26545;26546;26547	26543		6	9606
GNVQVVIPFLTESYSSSQDPPEK	1	0	Unmodified	2520.2384	0.23839896	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														21.687	21.687	2	8.8572E-10	17111	DP690-3	151.9	151.9			0.66699	0.69969	NaN	1	0	Median	5124800	2834400	2290400	5428	561	5088	10844	26548;26549;26550;26551	26548		4	9606
GNVVPSPLPTR	0	1	Unmodified	1135.635	0.63495714	2449	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	yes	yes	0	0	0	8	0								1									14.64	14.64	2	0.0078079	7701	DP690-8	82.749	82.749			0.92643	1.0851	NaN	1	0	Median	6372000	3100600	3271400	5429	2449	5089	10845	26552;26553;26554;26555;26556	26555		5	9606
GNWDEQFDKENTEER	1	1	Unmodified	1895.7922	0.79219865	661	P35237	SERPINB6	Serpin B6	yes	yes	0	0	1	6	0						1											14.078	14.078	3	3.7461E-05	7015	DP690-6	123.1	112.97			0.81104	0.90894	NaN	1	0	Median	20784000	11618000	9165900	5430	661	5090	10846	26557;26558	26558		2	9606
GNYDEGFGHRPHK	1	1	Unmodified	1512.6858	0.68582351	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	11	0											1						10.3	10.3	3	0.00014383	2554	DP690-11	111.63	90.381			0.91316	0.97893	NaN	1	0	Median	345730000	178090000	167640000	5431	2340	5091	10847	26559;26560	26560		2	9606
GPADPVLLQAQVQEGFGSLR	0	1	Unmodified	2081.0906	0.090552927	15	A6NKF1	SAC3D1	SAC3 domain-containing protein 1	yes	yes	0	0	0	14	0														1			20.887	20.887	2	7.516700000000001E-29	16774	DP690-14	219.41	169.12			NaN	NaN	NaN	0	0	Median	9041600	9041600	0	5432	15	5092	10848	26561;26562	26562		2	9606
GPADSLSTAAGAAELSAEGAGK	1	0	Unmodified	1929.928	0.92796385	1552	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	12	0												1					18.124	18.124	2	4.2144E-07	13286	DP690-12	140.68	109.08			NaN	NaN	NaN	0	0	Median	5547000	0	5547000	5433	1552	5093	10849	26563	26563		1	9606
GPAFVNPLIPESPEEEELFR	0	1	Unmodified	2269.1267	0.12666366	2453	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	13	0													1				22.529	22.529	2	2.2594E-13	18536	DP690-13	178.84	143.94			0.57983	0.69097	NaN	1	0	Median	6044200	3869300	2174900	5434	2453	5094	10850	26564;26565	26564		2	9606
GPAGDATVASEKESVM	1	0	Oxidation (M)	1563.7087	0.70865195	1349	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	1	1	8	4				1								1					12.242	12.242	2	2.2903E-11	5164	DP690-12	198.32	173.46			0.9033	1.0816	NaN	1	0	Median	33751000	17282000	16469000	5435	1349	5095	10851;10852	26566;26567;26568;26569	26566	2091	4	9606
GPATLVAPASVITIVK	1	0	Unmodified	1535.9287	0.92867954	2398	Q9ULX9	MAFF	Transcription factor MafF	yes	yes	0	0	0	15	0															1		19.724	19.724	2	0.0001861	14912	DP690-15	117.79	92.725			0.85249	0.98668	NaN	1	0	Median	4598900	2086200	2512700	5436	2398	5096	10853	26570;26571;26572;26573	26571		4	9606
GPAVGIDLGTTYSCVGVFQHGK	1	0	Unmodified	2262.1103	0.11030209	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	8.6	3.77				2							1	2					18.473	18.473	2;3	3.6825E-15	12868	DP690-4	163.11	147.63			1.8578	1.984	NaN	1	0	Median	147530000	112900000	34634000	5437	463	5097	10854;10855;10856;10857;10858	26574;26575;26576;26577;26578;26579;26580;26581;26582	26578		9	9606
GPAYGLSAEVK	1	0	Unmodified	1090.5659	0.56587452	845	P51911	CNN1	Calponin-1	yes	yes	0	0	0	14	0														1			14.147	14.147	2	0.0017712	7698	DP690-14	100.02	69.33			0.8196	0.98339	NaN	1	0	Median	115840000	83850000	31987000	5438	845	5098	10859	26583;26584;26585;26586	26585		4	9606
GPCIIYNEDNGIIK	1	0	Unmodified	1604.7868	0.78684269	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	13	0													1				17.067	17.067	2	2.7238E-05	11623	DP690-13	189.58	189.58			0.83152	0.95376	NaN	1	0	Median	94196000	56201000	37995000	5439	681	5099	10860	26587;26588;26589;26590	26590		4	9606
GPCVSENEIGTGGTCQWK	1	0	Unmodified	1978.8513	0.85131021	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	7	4			1								1						15.251	15.251	2	8.5204E-80	9752	DP690-11	317.99	268.99			NaN	NaN	NaN	0	0	Median	4678200	4678200	0	5440	1332	5100	10861;10862	26591;26592	26591		2	9606
GPDALTLLEYTETR	0	1	Unmodified	1577.7937	0.7937022	1883	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	0	12	0												1					21.174	21.174	2	3.3668E-05	17299	DP690-12	132.17	97.421			0.80707	0.96222	NaN	1	0	Median	32069000	17947000	14122000	5441	1883	5101	10863	26593	26593		1	9606
GPDGVCIPCQPGEPGQLVGR	0	1	Unmodified	2091.983	0.98299309	1487	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	yes	yes	0	0	0	12	0												1					17.293	17.293	2	6.4217E-05	12293	DP690-12	130.47	95.57			NaN	NaN	NaN	0	0	Median	7852300	7852300	0	5442	1487	5102	10864	26594	26594		1	9606
GPDLTTYGELVLEGTFR	0	1	Unmodified	1866.9363	0.9363437	7	A1L390	PLEKHG3	Pleckstrin homology domain-containing family G member 3	yes	yes	0	0	0	10	0										1							23.718	23.718	2	0.0019991	21665	DP690-10	121.28	86.203			NaN	NaN	NaN	0	0	Median	2469700	0	2469700	5443	7	5103	10865	26595	26595		1	9606
GPDNSMGFGAER	0	1	Unmodified	1236.5193	0.51933503	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	11	0											1						13.797	13.797	2	0.0011289	7666	DP690-11	104.05	52.612			0.90847	1.0832	NaN	1	0	Median	42760000	23755000	19005000	5444	264	5104	10866	26596	26596		1	9606
GPDNSMGFGAER	0	1	Oxidation (M)	1252.5142	0.51424965	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	1	0	11	0											1						11.457	11.457	2	0.013611	4216	DP690-11	99.973	58.097			NaN	NaN	NaN	0	0	Median	18283000	0	18283000	5445	264	5104	10867	26597;26598	26598	268	2	9606
GPDTYNSQVLIEATVIALTK	1	0	Unmodified	2132.1365	0.13650007	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	10	0										2							24.977	24.977	2	0.010176	23104	DP690-10	105.39	51.864			NaN	NaN	NaN	0	0	Median	0	0	0	5446	550	5105	10868;10869	26599;26600	26600		2	9606
GPEDSGAGGTGCGGADDPAK	1	0	Unmodified	1774.7064	0.70642011	1038	P78337	PITX1	Pituitary homeobox 1	yes	yes	0	0	0	14	0														1			10.549	10.549	2	7.9625E-22	2858	DP690-14	222.75	206.83			NaN	NaN	NaN	0	0	Median	0	0	0	5447	1038	5106	10870	26601	26601		1	9606
GPEPGPQPTMEGDVLDTLEALGYK	1	0	Oxidation (M)	2529.1945	0.19448523	1398	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	1	0	13	0													3				22.533	22.533	2	2.8952E-06	18581	DP690-13	142.32	107.02			NaN	NaN	NaN	0	0	Median	2225000	2225000	0	5448	1398	5107	10871;10872;10873	26602;26603;26604;26605	26604	2134	4	9606
GPEVDVSGPK	1	0	Unmodified	983.49238	0.49237523	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								11.643	11.643	2	0.0050415	4101	DP690-9	90.601	90.601			0.7107	0.90101	NaN	1	0	Median	7351700	4140500	3211200	5449	1145	5108	10874	26606;26607	26607		2	9606
GPFELEAFYSDPQGVPYPEAK	1	0	Unmodified	2340.095	0.095029182	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														21.323	21.323	2	4.5939E-07	16689	DP690-3	142.54	142.54			0.74406	0.78043	NaN	1	0	Median	5009200	2765800	2243400	5450	1778	5109	10875	26608;26609;26610;26611	26609		4	9606
GPFLVALGK	1	0	Unmodified	900.54329	0.54328858	1869	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	12	0												1					18.046	18.046	2	0.037738	13195	DP690-12	71.296	34.202			0.82234	0.98019	NaN	1	0	Median	51754000	29679000	22075000	5451	1869	5110	10876	26612;26613;26614;26615	26613		4	9606
GPFLVSAPLSTIINWER	0	1	Unmodified	1899.0254	0.025433475	1297	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	yes	no	0	0	0	10	0										1							23.843	23.843	2	8.7751E-07	21755	DP690-10	142.83	104.89			0.50538	0.63479	NaN	1	0	Median	11508000	7648800	3859000	5452	1297	5111	10877	26616	26616		1	9606
GPFTDVVTTNLK	1	0	Unmodified	1290.682	0.68196691	313;2293	Q9P0L0;O95292	VAPA;VAPB	Vesicle-associated membrane protein-associated protein A;Vesicle-associated membrane protein-associated protein B/C	no	no	0	0	0	15	0															1		17.667	17.667	2	0.00044454	12013	DP690-15	140.17	121.64			0.76528	0.83405	NaN	1	0	Median	209870000	120310000	89555000	5453	2293;313	5112	10878	26617;26618;26619;26620	26619		4	9606
GPFVEAEVPDVDLECPDAK	1	0	Unmodified	2085.9565	0.95648679	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10	0.707									1	2	1						19.428	19.428	2	2.9522000000000003E-33	15837	DP690-10	269.14	231.54			0.57382	0.72404	NaN	1	0	Median	122790000	85254000	37538000	5454	1145	5113	10879;10880;10881;10882	26621;26622;26623;26624;26625;26626;26627;26628;26629	26623		9	9606
GPGASGEQPEPGEAAAGGAAEEAR	0	1	Unmodified	2164.9621	0.96211753	2111	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	8	4				1								1					12.864	12.864	2	4.6727000000000003E-97	5968	DP690-12	354.93	324.93			0.66844	0.78538	11.187	2	0	Median	57914000	33274000	24640000	5455	2111	5114	10883;10884	26630;26631;26632;26633;26634;26635;26636;26637	26630		8	9606
GPGLASGQLYSYPAR	0	1	Unmodified	1535.7732	0.77324153	1789	Q92785	DPF2	Zinc finger protein ubi-d4	yes	yes	0	0	0	13	0													1				16.138	16.138	2	2.2607E-05	10305	DP690-13	155.26	132.92			0.60325	0.73478	NaN	1	0	Median	43907000	27296000	16611000	5456	1789	5115	10885	26638;26639;26640	26639		3	9606
GPGLEPVGNVANKPTYFDIYTAGAGTGDVAVVIVDPQGR	1	1	Unmodified	3913.985	0.98503181	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	9	0									1								21.242	21.242	3	7.5348E-14	16335	DP690-9	121.79	102.22			NaN	NaN	NaN	0	0	Median	2033900	2033900	0	5457	1270	5116	10886	26641	26641		1	9606
GPGLGSTQGQTIALPAQGLIEFR	0	1	Unmodified	2310.2332	0.23319442	1073	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	14	0														1			21.199	21.199	2	7.5571E-46	17037	DP690-14	281.68	281.68			0.76248	0.93341	NaN	1	0	Median	16069000	8636800	7432000	5458	1073	5117	10887	26642;26643;26644;26645;26646;26647;26648	26644		7	9606
GPGLSQAFVGQK	1	0	Unmodified	1187.6299	0.62987176	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	9.4	4.22		1							1	1	1				1		14.789	14.789	2	6.6647E-05	7429	DP690-2	129.85	105.33			0.63247	0.74563	27.406	3	0	Median	607750000	288940000	318810000	5459	1270	5118	10888;10889;10890;10891;10892	26649;26650;26651;26652;26653;26654;26655;26656;26657;26658;26659	26658		11	9606
GPGNLNRPIFSK	1	1	Unmodified	1298.7095	0.70951906	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	1	9	0									1								13.07	13.07	3	0.0028546	5948	DP690-9	80.245	54.903			0.71172	0.82547	NaN	1	0	Median	20419000	11468000	8951800	5460	2217	5119	10893	26660;26661	26660		2	9606
GPGTSFEFALAIVEALNGK	1	0	Unmodified	1919.9993	0.9992783	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	7	0							2										26.779	26.779	2	1.0225E-11	22247	DP690-7	174.72	158.25			0.88616	0.92765	2.7216	2	0	Median	2193200	1297900	895300	5461	1939	5120	10894;10895	26662;26663;26664;26665	26665		4	9606
GPHHLDNSSPGPGSEAR	0	1	Unmodified	1713.7819	0.78190874	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	7.6	3.77			2							1	2						10.234	10.234	3;4	1.6592E-09	2442	DP690-11	179.55	151.22			0.62431	0.68076	33.438	5	0	Median	375650000	222360000	153290000	5462	1755	5121	10896;10897;10898;10899;10900	26666;26667;26668;26669;26670;26671;26672;26673;26674;26675;26676;26677;26678;26679;26680;26681;26682;26683;26684;26685;26686	26671		21	9606
GPHSPQVPSQVQSPMTSR	0	1	Oxidation (M)	1934.9269	0.92685842	164	O43166	SIPA1L1	Signal-induced proliferation-associated 1-like protein 1	yes	yes	0	1	0	10	0										1							11.788	11.788	3	0.053021	4778	DP690-10	43.383	16.12			0.9647	1.2083	NaN	1	0	Median	41381000	24863000	16517000	5463	164	5122	10901	26687	26687		1	9606
GPHVDVSGPDIDIEGPEGK	1	0	Unmodified	1916.9116	0.91158551	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10	0										1							16.011	16.011	3	0.020427	11062	DP690-10	74.618	46.975			NaN	NaN	NaN	0	0	Median	45040000	45040000	0	5464	1145	5123	10902	26688	26688		1	9606
GPILSFASTR	0	1	Unmodified	1047.5713	0.57129425	711	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	14	0														1			16.641	16.641	2	0.0018795	11129	DP690-14	136.8	22.908			NaN	NaN	NaN	0	0	Median	60743000	60743000	0	5465	711	5124	10903	26689;26690	26689		2	9606
GPKPAFGQQHQQQPK	2	0	Unmodified	1674.859	0.85903685	801	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	1	10	0										2							10.291	10.291	3;4	0.0016098	2559	DP690-10	81.239	54.749			0.51079	0.58271	56.66	2	0	Median	566740000	448070000	118660000	5466	801	5125	10904;10905	26691;26692;26693;26694;26695	26691		5	9606
GPLEPSEPAVVAAAR	0	1	Unmodified	1462.778	0.77799256	614	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	14	0														1			15.713	15.713	2	2.4037E-05	9797	DP690-14	147.3	147.3			0.64523	0.77639	NaN	1	0	Median	74190000	44698000	29492000	5467	614	5126	10906	26696;26697;26698;26699	26696		4	9606
GPLEYVPSAK	1	0	Unmodified	1059.5601	0.56006086	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														15.247	15.247	2	0.047087	8958	DP690-3	65.224	28.668			0.41095	0.43961	NaN	1	0	Median	23217000	15006000	8211100	5468	1293	5127	10907	26700	26700		1	9606
GPLLEEQALTK	1	0	Unmodified	1197.6605	0.66050319	1398	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	13	0													1				15.669	15.669	2	9.5554E-05	9623	DP690-13	131.12	49.591			0.82713	0.9173	NaN	1	0	Median	225460000	120510000	104960000	5469	1398	5128	10908	26701;26702;26703;26704	26704		4	9606
GPLLVSTESHPVK	1	0	Unmodified	1362.7507	0.75071518	2460	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	14	0														4			12.495	12.495	2;3	9.4991E-05	5453	DP690-14	123.96	84.039			0.68445	0.82968	20.806	3	0	Plateau	215040000	97889000	117150000	5470	2460	5129	10909;10910;10911;10912	26705;26706;26707;26708;26709;26710;26711;26712;26713;26714;26715;26716;26717	26712		13	9606
GPLMMYISK	1	0	Oxidation (M)	1054.5191	0.51912402	483	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	7	4			1								1						16.167	16.167	2	0.029746	11143	DP690-11	81.548	66.766			0.77715	0.94013	NaN	1	0	Median	100550000	61231000	39320000	5471	483	5130	10913;10914	26718;26719;26720	26719	599	3	9606
GPLMMYISK	1	0	Unmodified	1038.5242	0.5242094	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	7	4			1								1						17.444	17.444	2	0.015014	12882	DP690-11	84.498	65.692			0.95843	1.0635	9.0009	2	0	Median	163390000	87688000	75706000	5472	483	5130	10915;10916	26721;26722;26723;26724;26725	26721		5	9606
GPLPAAPPVAPER	0	1	Unmodified	1270.7034	0.70337105	2188	Q9NQC3	RTN4	Reticulon-4	yes	yes	0	0	0	13	0													1				14.854	14.854	2	0.00098151	8471	DP690-13	103.26	87.995			0.30129	0.3679	NaN	1	0	Median	38341000	28151000	10191000	5473	2188	5131	10917	26726;26727	26727		2	9606
GPLPLSSQHR	0	1	Unmodified	1090.5883	0.5883413	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											4						10.945	10.945	2;3	0.0001207	3534	DP690-11	152.11	81.56			1.5147	1.8188	NaN	1	0	Median	64903000	27318000	37585000	5474	735	5132	10918;10919;10920;10921	26728;26729;26730;26731	26731		4	9606
GPLQSVQVFGR	0	1	Unmodified	1186.6459	0.64585618	969	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	12	4								1								1	17.341	17.341	2	8.4468E-05	11397	DP690-16	172.21	172.21			0.85064	0.90674	6.2574	2	0	Median	792750000	418010000	374740000	5475	969	5133	10922;10923	26732;26733;26734;26735;26736;26737;26738;26739	26735		8	9606
GPLVNASLR	0	1	Unmodified	925.53451	0.53451481	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	4	0				1													13.835	13.835	2	0.0058193	6888	DP690-4	96.492	50.121			2.8195	2.9715	NaN	1	0	Median	114460000	31756000	82706000	5476	111	5134	10924	26740;26741;26742;26743	26741		4	9606
GPMTGGIQGPGPINIGAGGPPQGPR	0	1	Unmodified	2282.159	0.15898362	2089	Q9H0L4	CSTF2T	Cleavage stimulation factor subunit 2 tau variant	yes	yes	0	0	0	12	0												1					17.696	17.696	2	6.4177E-06	12747	DP690-12	132.08	97.98			NaN	NaN	NaN	0	0	Median	0	0	0	5477	2089	5135	10925	26744	26744		1	9606
GPPAPAPEVEELAR	0	1	Unmodified	1431.7358	0.73579339	781	P48681	NES	Nestin	yes	yes	0	0	0	10.5	0.5										1	1						16.142	16.142	2	0.0012421	11106	DP690-11	97.456	65.042			0.67858	0.81064	10.376	2	0	Median	265550000	158130000	107420000	5478	781	5136	10926;10927	26745;26746;26747	26747		3	9606
GPPDFSSDEEREPTPVLGSGAAAAGR	0	2	Unmodified	2569.2045	0.20447307	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	1	13.2	0.829												1	1	2			15.714	15.714	3	5.7673E-16	9958	DP690-12	165.9	156.25			0.50466	0.57582	4.0393	2	0	Median	232970000	154630000	78340000	5479	723	5137	10928;10929;10930;10931	26748;26749;26750;26751;26752;26753;26754;26755;26756;26757;26758;26759;26760	26749		13	9606
GPPPPPGDENREMDDPSVGPK	1	1	Oxidation (M)	2202.9852	0.98516116	1210	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	1	1	11	0											1						11.478	11.478	3	0.00044796	4261	DP690-11	87.16	75.204			0.49221	0.60507	NaN	1	0	Median	21242000	13122000	8119900	5480	1210	5138	10932	26761;26762;26763	26762	1857	3	9606
GPPQEEEEEEDEEEEATKEDAEAPGIR	1	1	Unmodified	3041.2745	0.27452228	844	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	1	6	0						1											15.233	15.233	3	1.1691E-11	8392	DP690-6	153.59	147.56			0.5631	0.63107	NaN	1	0	Median	8875700	4138400	4737200	5481	844	5139	10933	26764;26765;26766;26767;26768;26769;26770	26767		7	9606
GPPQEEEEEEDEEEEATKEDAEAPGIRDHESL	1	1	Unmodified	3622.5191	0.51906266	844	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	2	6	0						1											15.686	15.686	4	3.2646E-07	8961	DP690-6	90.899	87.028			0.56705	0.6355	NaN	1	0	Median	7188300	4065200	3123100	5482	844	5140	10934	26771;26772	26772		2	9606
GPPQPLPAVQPSGPINMEETRPEGSYFSK	1	1	Oxidation (M)	3125.5128	0.51279968	2438	Q9Y2D5	AKAP2	A-kinase anchor protein 2	yes	yes	0	1	1	10	0										1							16.741	16.741	3	9.5724E-05	12149	DP690-10	71.308	60.304			0.35046	0.44156	NaN	1	0	Median	47874000	32862000	15012000	5483	2438	5141	10935	26773	26773	2888	1	9606
GPPQSPVFEGVYNNSR	0	1	Unmodified	1746.8325	0.83254733	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	7	4			1								1						16.435	16.435	2	1.1135E-08	11515	DP690-11	191.79	176.41			0.63243	0.75476	NaN	1	0	Median	34934000	18320000	16614000	5484	1755	5142	10936;10937	26774;26775;26776	26774		3	9606
GPQITGPSLEGDLGLK	1	0	Unmodified	1580.841	0.84098675	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							18.822	18.822	2	2.1517E-07	15076	DP690-10	171.26	152.73			0.67281	0.84407	29.386	2	0	Median	102250000	55553000	46699000	5485	1145	5143	10938;10939	26777;26778;26779;26780;26781	26779		5	9606
GPQVQQPPPSNR	0	1	Unmodified	1303.6633	0.66329715	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	8.33	3.77			1								2						10.307	10.307	2	4.7082E-20	2610	DP690-11	234.81	121.55			0.54721	0.58976	NaN	1	0	Median	73209000	46735000	26474000	5486	1332	5144	10940;10941;10942	26782;26783;26784;26785;26786;26787	26782		6	9606
GPQVSSALNLDTSK	1	0	Unmodified	1415.7256	0.72562264	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10	0.816									1	1	1						15.16	15.16	2	1.1387E-05	8681	DP690-9	177.57	160.62			0.78228	0.97456	4.8719	3	0	Median	159100000	86234000	72867000	5487	1145	5145	10943;10944;10945	26788;26789;26790;26791;26792;26793;26794;26795;26796	26795		9	9606
GPSAAFAPAAAEPK	1	0	Unmodified	1283.651	0.65100113	477	P12931	SRC	Proto-oncogene tyrosine-protein kinase Src	yes	yes	0	0	0	12	0												1					13.795	13.795	2	0.0010194	7273	DP690-12	100.55	52.73			0.60443	0.72064	NaN	1	0	Median	55502000	34802000	20700000	5488	477	5146	10946	26797;26798;26799;26800	26798		4	9606
GPSGCVESLEVTCR	0	1	Unmodified	1549.6865	0.68647672	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	7	4			1								1						14.815	14.815	2	9.677599999999999E-46	9158	DP690-11	251.43	173.33			0.87539	1.0049	NaN	1	0	Median	63846000	11436000	52410000	5489	770	5147	10947;10948	26801;26802;26803;26804;26805;26806;26807	26802		7	9606
GPSGSASSRPGVSATPPK	1	1	Unmodified	1638.8325	0.83254733	1457	Q66K74	MAP1S	Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain	yes	yes	0	0	1	15	0															1		10.291	10.291	3	0.0071558	2639	DP690-15	77.324	60.647			0.58548	0.68383	NaN	1	0	Median	19923000	13133000	6790300	5490	1457	5148	10949	26808	26808		1	9606
GPSLDIDTPDVNIEGPEGK	1	0	Unmodified	1951.9375	0.93746591	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10	0										1							18.423	18.423	2	0.017277	14570	DP690-10	90.689	46.697			NaN	NaN	NaN	0	0	Median	22669000	22669000	0	5491	1145	5149	10950	26809	26809		1	9606
GPSPEGSSSTESSPEHPPK	1	0	Unmodified	1892.8388	0.8388145	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	9	0									1								10.257	10.257	3	0.0021117	2468	DP690-9	121.27	87.962			NaN	NaN	NaN	0	0	Median	0	0	0	5492	2422	5150	10951	26810	26810		1	9606
GPSWDPFRDWYPHSR	0	2	Unmodified	1901.8598	0.85976513	374	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	1	7	0							1										18.803	18.803	4	0.02878	13128	DP690-7	51.643	51.643			0.97011	0.9953	NaN	1	0	Median	61637000	33713000	27925000	5493	374	5151	10952	26811;26812;26813	26813		3	9606
GPSYGEDVSNTTTAQK	1	0	Unmodified	1653.7482	0.74820857	616	P29590	PML	Protein PML	yes	yes	0	0	0	9.5	3.2				1							2	1					12.261	12.261	2	3.2779E-22	5368	DP690-11	234.24	184.2			0.77795	0.9412	6.108	2	0	Median	60154000	32303000	27851000	5494	616	5152	10953;10954;10955;10956	26814;26815;26816;26817;26818;26819;26820;26821	26814		8	9606
GPSYGLSAEVK	1	0	Unmodified	1106.5608	0.56078914	1330;1934	Q99439;Q15417	CNN2;CNN3	Calponin-2;Calponin-3	no	no	0	0	0	10	4.32						1		1								1	14.004	14.004	2	0.00017777	6948	DP690-6	123.86	97.758			0.82982	0.9252	18.772	3	0	Median	251620000	130700000	120920000	5495	1934;1330	5153	10957;10958;10959	26822;26823;26824;26825;26826;26827;26828	26825		7	9606
GPTEADELMK	1	0	Oxidation (M)	1105.4961	0.49613997	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	1	0	4	0				1													13.897	13.897	2	0.016245	7055	DP690-4	83.948	33.821			0.88535	0.95888	NaN	1	0	Median	27197000	15407000	11789000	5496	469	5154	10960	26829;26830	26829	556	2	9606
GPTEADELMKR	1	1	Unmodified	1245.6023	0.60233638	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	1	4	0				1													12.677	12.677	3	0.00044027	5497	DP690-4	101.95	74.212			0.82216	0.9377	NaN	1	0	Median	11719000	5739200	5979600	5497	469	5155	10961	26831;26832	26831		2	9606
GPTPAILESLISINNK	1	0	Unmodified	1665.9301	0.93013611	727	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	2	0		1															22.04	22.04	2	0.0046048	15762	DP690-2	89.283	64.215			0.69088	0.67946	NaN	1	0	Median	1575000	953140	621810	5498	727	5156	10962	26833;26834;26835;26836	26835		4	9606
GPTPFNQNQLHQLR	0	1	Unmodified	1648.8434	0.84338678	835	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	10	0										1							14.163	14.163	3	0.019761	8313	DP690-10	80.318	53.67			NaN	NaN	NaN	0	0	Median	69301000	0	69301000	5499	835	5157	10963	26837;26838	26837		2	9606
GPTVGGGLPGIGVQGLEGNLQMPGIK	1	0	Oxidation (M)	2461.2999	0.29989378	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	10	0										1							20.136	20.136	2	0.00026201	16896	DP690-10	97.823	59.73			NaN	NaN	NaN	0	0	Median	0	0	0	5500	1145	5158	10964	26839	26839	1774	1	9606
GPVEGYEENEEFLR	0	1	Unmodified	1666.7475	0.74748029	2353	Q9UI30	TRMT112	Multifunctional methyltransferase subunit TRM112-like protein	yes	yes	0	0	0	12	4								1								1	17.005	17.005	2	2.4267E-05	11103	DP690-16	172.56	152.27			0.88377	1.0386	37.401	2	0	Median	8086500	4102600	3983900	5501	2353	5159	10965;10966	26840;26841;26842;26843;26844;26845;26846;26847	26842		8	9606
GPVGLEGLLTTK	1	0	Unmodified	1183.6812	0.68123863	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	10.2	1.3									2		1	1					19.192	19.192	2	8.3649E-05	15386	DP690-11	177.78	117.38			0.8219	0.92222	9.2537	2	0	Median	580910000	324920000	256000000	5502	891	5160	10967;10968;10969;10970	26848;26849;26850;26851;26852;26853;26854;26855;26856	26851		9	9606
GPVGTVSEAQLAR	0	1	Unmodified	1283.6834	0.68336389	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	10	0										1							14	14	2	0.00011622	8030	DP690-10	122.96	90.547			0.55104	0.67861	NaN	1	0	Median	143330000	94487000	48839000	5503	2276	5161	10971	26857;26858	26857		2	9606
GPVKPTGGPGGGGTQTQQQMNQLK	2	0	Unmodified	2365.1808	0.18084127	589	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	1	8.25	4.26				2								1	1				11.908	11.908	3	2.3141E-32	4564	DP690-13	212.65	187.49			0.69447	0.79774	0.81148	2	0	Median	59993000	35824000	24169000	5504	589	5162	10972;10973;10974;10975	26859;26860;26861;26862;26863;26864;26865;26866	26864		8	9606
GPVKPTGGPGGGGTQTQQQMNQLK	2	0	Oxidation (M)	2381.1758	0.17575589	589	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	1	1	10.2	3.63				1								2	1				10.788	10.788	3	1.0642E-22	2660	DP690-13	183.1	183.1			0.65166	0.70208	5.8637	2	0	Median	151030000	107720000	43307000	5505	589	5162	10976;10977;10978;10979	26867;26868;26869;26870;26871;26872;26873;26874;26875	26871	778	9	9606
GPVLLDNVGCAGTEAR	0	1	Unmodified	1627.7988	0.79880436	1731	Q8WTU2	SSC4D	Scavenger receptor cysteine-rich domain-containing group B protein	yes	yes	0	0	0	4	0				1													16.213	16.213	2	0.0015667	10148	DP690-4	131.17	86.408			NaN	NaN	NaN	0	0	Median	2754700	0	2754700	5506	1731	5163	10980	26876;26877	26876		2	9606
GPVPAKPTVLFEK	2	0	Unmodified	1381.7969	0.79693709	1457	Q66K74	MAP1S	Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain	yes	yes	0	0	1	11	0											1						14.559	14.559	3	0.019627	8836	DP690-11	58.595	37.045			0.73273	0.84618	NaN	1	0	Median	86506000	50371000	36135000	5507	1457	5164	10981	26878;26879;26880	26880		3	9606
GPVSGTEPEPVYSMEAADYR	0	1	Oxidation (M)	2169.9525	0.95246405	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	1	0	9.75	3.34				1							1	2					15.589	15.589	2	9.0135E-39	9854	DP690-12	227.91	189.33			0.72591	0.87108	NaN	1	0	Median	126640000	85143000	41500000	5508	1267	5165	10982;10983;10984;10985	26881;26882;26883;26884;26885;26886;26887;26888	26885	1936	8	9606
GPVSGTEPEPVYSMEAADYR	0	1	Unmodified	2153.9575	0.95754942	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	11.5	0.5											1	1					17.423	17.423	2	1.0986E-37	12350	DP690-12	288.29	244.79			0.75024	0.9055	2.184	2	0	Median	125960000	75115000	50847000	5509	1267	5165	10986;10987	26889;26890;26891;26892;26893;26894;26895;26896	26894		8	9606
GPVSPSVSFQPLAR	0	1	Unmodified	1440.7725	0.77251325	1545	Q7Z434	MAVS	Mitochondrial antiviral-signaling protein	yes	yes	0	0	0	12	0												1					17.242	17.242	2	8.0006E-05	12068	DP690-12	150.04	150.04			0.57867	0.68847	NaN	1	0	Median	34977000	19541000	15435000	5510	1545	5166	10988	26897	26897		1	9606
GPVTIPYPLFQSHVEDLYVEGLPEGIPFR	0	1	Unmodified	3268.6809	0.68085128	1041	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	11	0											1						23.547	23.547	3	0.00054253	21201	DP690-11	80.355	57.468			NaN	NaN	NaN	0	0	Median	2010600	2010600	0	5511	1041	5167	10989	26898;26899	26898		2	9606
GPVTSHGFSVK	1	0	Unmodified	1114.5771	0.57710791	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	10	0										2							11.561	11.561	2;3	0.0045737	4506	DP690-10	89.029	63.455			0.81526	1.0053	NaN	1	0	Median	56843000	28221000	28622000	5512	1399	5168	10990;10991	26900;26901;26902	26901		3	9606
GPYESGSGHSSGLGHQESR	0	1	Unmodified	1927.8409	0.84088018	54	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	1	0	1																10.344	10.344	4	0.0018164	2178	DP690-1	70.802	57.631		+	0.23448	0.23071	NaN	1	0	Median	11251000	8941400	2309700	5513	54	5169	10992	26903	26903		1	9606
GPYESGSGHSSGLGHR	0	1	Unmodified	1583.7077	0.70768116	54	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	1	0	2																10.289	10.289	3;4	4.2568E-08	2160	DP690-1	167.22	129.23		+	NaN	NaN	NaN	0	0	Median	22571000	22571000	0	5514	54	5170	10993;10994	26904;26905;26906;26907	26907		4	9606
GQAAVQQLQAEGLSPR	0	1	Unmodified	1651.8642	0.86418181	278	P16152;O75828	CBR1;CBR3	Carbonyl reductase [NADPH] 1;Carbonyl reductase [NADPH] 3	yes	no	0	0	0	7	0							3										15.497	15.497	2	0.00027561	8935	DP690-7	160.22	111.99			NaN	NaN	NaN	0	0	Median	0	0	0	5515	278	5171	10995;10996;10997	26908;26909;26910	26909		3	9606
GQATDIAIQAEEIMK	1	0	Oxidation (M)	1632.8029	0.80288668	1368	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	0	1	0	15	0															1		16.567	16.567	2	0.00049846	10845	DP690-15	112.5	112.5			0.60366	0.71169	NaN	1	0	Median	11118000	6755400	4362600	5516	1368	5172	10998	26911;26912	26912	2113	2	9606
GQAVTLLPFFTSLTGGSLEELR	0	1	Unmodified	2335.2424	0.24236212	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							25.488	25.488	2	6.5656E-11	21105	DP690-9	161.08	112.61			0.66362	0.81904	8.833	2	0	Median	10340000	6096700	4243400	5517	1046	5173	10999;11000	26913;26914;26915;26916;26917;26918;26919;26920	26920		8	9606
GQAVTLLPFFTSLTGGSLEELRR	0	2	Unmodified	2491.3435	0.34347315	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	8.43	2.66		1							3	3							23.64	23.64	2;3	8.5387E-38	21279	DP690-10	234.51	234.51			0.65495	0.90098	25.043	6	0	Linear	342070000	189250000	152820000	5518	1046	5174	11001;11002;11003;11004;11005;11006;11007	26921;26922;26923;26924;26925;26926;26927;26928;26929;26930;26931;26932;26933;26934;26935;26936;26937;26938;26939;26940;26941;26942	26922		22	9606
GQCDLELINVCNENSLFK	1	0	Unmodified	2151.9929	0.99288907	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	10.5	0.5										1	1						20.707	20.707	2	1.7449E-22	17681	DP690-10	223.58	194.03			0.78239	0.96688	NaN	1	0	Median	71310000	45449000	25861000	5519	1075	5175	11008;11009	26943;26944;26945;26946;26947;26948;26949	26944		7	9606
GQDGSPQIENIQPFSAK	1	0	Unmodified	1814.8799	0.87989145	725	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	3	0			1														17.093	17.093	2	0.011635	11431	DP690-3	113.52	71.818			NaN	NaN	NaN	0	0	Median	0	0	0	5520	725	5176	11010	26950	26950		1	9606
GQELAFPLSPDWQVDYESYTWR	0	1	Unmodified	2686.234	0.23398228	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	13	0													1				23.615	23.615	2	5.5024E-07	19772	DP690-13	142.57	142.57			0.76121	0.89112	NaN	1	0	Median	3069700	1858300	1211400	5521	598	5177	11011	26951;26952;26953;26954	26951		4	9606
GQESAGIVTSDGSSVPTFK	1	0	Unmodified	1865.9007	0.90068647	1121	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	4	0				1													16.421	16.421	2	4.0491E-17	10430	DP690-4	205.27	175.27			0.8265	0.90028	NaN	1	0	Median	10563000	5865200	4697700	5522	1121	5178	11012	26955;26956;26957;26958	26957		4	9606
GQFAEHLLGAGFVSSR	0	1	Unmodified	1674.8478	0.84780346	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	3	0			1														17.565	17.565	3	0.0011101	12147	DP690-3	81.594	49.98			0.52205	0.59345	NaN	1	0	Median	11566000	6838400	4728000	5523	2105	5179	11013	26959;26960	26959		2	9606
GQFSTDELVAEVEKR	1	1	Unmodified	1706.8475	0.84752869	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	1	8	3.54		1							1	1	1						18.097	18.097	3	9.8897E-08	13976	DP690-10	192.14	156.38			1.0767	1.146	38.12	2	0	Median	352520000	229060000	123460000	5524	1075	5180	11014;11015;11016;11017	26961;26962;26963;26964;26965;26966;26967;26968	26962		8	9606
GQGNFFSFLPVLNWASMHR	0	1	Oxidation (M)	2223.0684	0.068377697	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	1	0	9	0									1								23.777	23.777	3	0.0010934	19225	DP690-9	75.97	48.939			0.91932	1.1461	NaN	1	0	Median	3407200	1762100	1645100	5525	295	5181	11018	26969;26970	26969	305	2	9606
GQGSVSASVTEGQQNEQ	0	0	Unmodified	1704.7551	0.75508487	898	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	14	0														1			12.718	12.718	2	0.00045278	5700	DP690-14	137.01	90.599			NaN	NaN	NaN	0	0	Median	0	0	0	5526	898	5182	11019	26971;26972	26972		2	9606
GQHDLESDVQQQLFK	1	0	Unmodified	1770.8537	0.8536767	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		2															17.674	17.674	2;3	3.8115E-06	10885	DP690-2	127.07	96.844			0.8552	0.85372	19.379	2	0	Median	23533000	12689000	10843000	5527	2418	5183	11020;11021	26973;26974;26975;26976;26977	26973		5	9606
GQHFYAVER	0	1	Unmodified	1105.5305	0.53049207	1344	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	0	0	4	0				1													11.172	11.172	2	0.01073	3721	DP690-4	88.819	48.752			0.82008	0.95173	NaN	1	0	Median	6124800	3302100	2822700	5528	1344	5184	11022	26978;26979	26979		2	9606
GQHVPGSPFQFTVGPLGEGGAHK	1	0	Unmodified	2303.1447	0.14471376	549;1270	P21333;Q14315	FLNA;FLNC	Filamin-A;Filamin-C	no	no	0	0	0	7.67	4.11		2							1	1	1	1					16.947	16.947	3;4	9.4457E-07	10055	DP690-2	133.84	120.99			0.69782	0.83242	10.155	5	0	Median	1512799999.9999998	900260000	612550000	5529	549;1270	5185	11023;11024;11025;11026;11027;11028	26980;26981;26982;26983;26984;26985;26986;26987;26988;26989;26990;26991;26992;26993;26994;26995;26996;26997;26998;26999;27000;27001;27002	26992		23	9606
GQHVTGSPFQFTVGPLGEGGAHK	1	0	Unmodified	2307.1396	0.13962838	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	7.75	3.34		1							1	2							16.634	16.634	3;4	0.00030041	11888	DP690-10	90.308	70.888			0.77872	0.89718	9.6955	4	0	Median	637820000	358980000	278830000	5530	250	5186	11029;11030;11031;11032	27003;27004;27005;27006;27007;27008;27009;27010	27005		8	9606
GQILMPNIGYGSNK	1	0	Oxidation (M)	1506.7501	0.75006325	1005	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	0	16	0																1	15.538	15.538	2	0.0091486	9134	DP690-16	80.17	51.938			0.83637	0.95201	NaN	1	0	Median	42576000	20900000	21676000	5531	1005	5187	11033	27011	27011	1528	1	9606
GQILMPNIGYGSNKK	2	0	Oxidation (M)	1634.845	0.84502627	1005	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	1	16	0																2	13.656	13.656	3	0.00060641	6701	DP690-16	87.863	66.032			1.0313	1.177	NaN	1	0	Median	31359000	7891700	23468000	5532	1005	5188	11034;11035	27012;27013;27014;27015	27013	1528	4	9606
GQIQVILGPMFSGK	1	0	Oxidation (M)	1489.7963	0.79628516	367	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	1	0	11	4							1								1		18.486	18.486	2	7.2432E-05	13269	DP690-15	140.78	140.78			0.86002	0.9597	53.615	2	0	Median	111160000	64919000	46245000	5533	367	5189	11036;11037	27016;27017;27018;27019;27020;27021;27022	27017	380	7	9606
GQIQVILGPMFSGK	1	0	Unmodified	1473.8014	0.80137054	367	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	0	0	7	0							1										20.97	20.97	2	0.03297	15835	DP690-7	63.091	63.091			0.72359	0.79064	NaN	1	0	Median	11336000	5493200	5842500	5534	367	5189	11038	27023;27024	27024		2	9606
GQLCDLNAELKR	1	1	Unmodified	1415.7191	0.71909747	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	1	11.5	0.5											1	1					14.371	14.371	3	1.5423E-05	8446	DP690-11	136.96	98.242			0.83774	1.0156	12.905	2	0	Median	153570000	87609000	65960000	5535	2024	5190	11039;11040	27025;27026;27027;27028;27029;27030	27025		6	9606
GQLCELSCSTDYR	0	1	Unmodified	1587.6657	0.66574127	1962	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	6	0						1											14.885	14.885	2	1.0402E-10	8047	DP690-6	220.94	198.26			1.9445	2.2205	NaN	1	0	Median	14222000	5098100	9124300	5536	1962	5191	11041	27031;27032;27033;27034	27032		4	9606
GQLESIVENIR	0	1	Unmodified	1256.6725	0.67246486	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	3	0			1														18.521	18.521	2	0.00014626	13205	DP690-3	172.88	94.547			1.019	1.1204	NaN	1	0	Median	50067000	25027000	25040000	5537	518	5192	11042	27035;27036;27037;27038	27036		4	9606
GQLLIFGATNWDLIGR	0	1	Unmodified	1772.9574	0.95735391	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	9	0									1								23.442	23.442	2	3.0367E-09	18794	DP690-9	191.79	191.79			0.84198	1.0549	NaN	1	0	Median	5681300	3001200	2680100	5538	2298	5193	11043	27039;27040;27041;27042	27040		4	9606
GQLQEAIEHYR	0	1	Unmodified	1342.663	0.6629628	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	7	4			1								1						15.022	15.022	3	0.00057024	9465	DP690-11	100.88	75.756			0.86658	1.0122	5.1912	2	0	Median	153150000	79904000	73249000	5539	149	5194	11044;11045	27043;27044;27045;27046	27044		4	9606
GQNDLMGTAEDFADQFLR	0	1	Oxidation (M)	2042.9004	0.90036889	147	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	1	0	9.67	0.471									1	2							22.944	22.944	2	2.4567E-09	20454	DP690-10	150.26	124.56			0.76869	0.9608	9.9677	3	0	Median	33430000	18366000	15064000	5540	147	5195	11046;11047;11048	27047;27048;27049;27050;27051;27052;27053;27054	27047	163	8	9606
GQNDLMGTAEDFADQFLR	0	1	Unmodified	2026.9055	0.90545427	147	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	9.33	0.471									2	1							25.183	25.183	2	0.00023956	20766	DP690-9	110.92	97.495			0.77793	0.90091	NaN	1	0	Median	941350	583660	357690	5541	147	5195	11049;11050;11051	27055;27056;27057;27058;27059	27058		5	9606
GQNHNVQGFHPYR	0	1	Unmodified	1552.7284	0.72835703	1845	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	0	0	13	0													1				10.452	10.452	4	0.06295	2781	DP690-13	53.252	29.318			NaN	NaN	NaN	0	0	Median	2405200	0	2405200	5542	1845	5196	11052	27060	27060		1	9606
GQNLLLTNLQTIQGILER	0	1	Unmodified	2023.1426	0.1425885	475	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	10	0										1							25.202	25.202	2	2.0534E-29	23335	DP690-10	231.52	231.52			0.74049	0.91823	NaN	1	0	Median	6824700	3628900	3195800	5543	475	5197	11053	27061;27062;27063;27064	27063		4	9606
GQNVLLTENAEVK	1	0	Unmodified	1413.7464	0.74635808	343	O95819;Q8N4C8;Q9UKE5	MAP4K4;MINK1;TNIK	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1;TRAF2 and NCK-interacting protein kinase	yes	no	0	0	0	9	0									1								14.894	14.894	2	0.01223	8397	DP690-9	73.951	41.221			0.67289	0.84834	NaN	1	0	Median	6438700	3324300	3114400	5544	343	5198	11054	27065;27066	27065		2	9606
GQNWLIYTYGVTNSGK	1	0	Unmodified	1799.8842	0.88424855	310	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	11	0											1						19.807	19.807	2	0.024054	16302	DP690-11	103.46	52.978			NaN	NaN	NaN	0	0	Median	0	0	0	5545	310	5199	11055	27067	27067		1	9606
GQPAIIDGELYNEVK	1	0	Unmodified	1644.8359	0.83590137	2432	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	6	0						1											17.877	17.877	2	0.00087852	11622	DP690-6	100.19	77.159			0.83673	0.93542	NaN	1	0	Median	3727800	2006500	1721200	5546	2432	5200	11056	27068;27069	27068		2	9606
GQPDTVQDALR	0	1	Unmodified	1198.5942	0.59421454	2114	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	0	2	0		1															13.771	13.771	2	0.023342	6276	DP690-2	96.665	63.287			NaN	NaN	NaN	0	0	Median	6480800	6480800	0	5547	2114	5201	11057	27070;27071	27070		2	9606
GQPFDVGPR	0	1	Unmodified	971.48248	0.48247924	600	P27361	MAPK3	Mitogen-activated protein kinase 3	yes	yes	0	0	0	6	0						1											14.121	14.121	2	0.067481	7277	DP690-6	85.064	39.048			NaN	NaN	NaN	0	0	Median	7217000	7217000	0	5548	600	5202	11058	27072	27072		1	9606
GQPIYIQFSNHK	1	0	Unmodified	1430.7306	0.73064844	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	11.8	3.72				2								5	1	1	2	1	14.775	14.775	2;3	6.7624E-08	8688	DP690-12	205.83	147.39			0.79533	0.8865	21.905	9	0	Median	6040299999.999999	3376199999.9999995	2664100000	5549	595	5203	11059;11060;11061;11062;11063;11064;11065;11066;11067;11068;11069;11070	27073;27074;27075;27076;27077;27078;27079;27080;27081;27082;27083;27084;27085;27086;27087;27088;27089;27090;27091;27092;27093;27094;27095;27096;27097;27098;27099;27100;27101;27102;27103	27080		31	9606
GQPLPPDLLQQAK	1	0	Unmodified	1403.7773	0.77726428	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															16.769	16.769	2	0.003613	9805	DP690-2	88.134	88.134			1.046	1.0564	NaN	1	0	Median	17472000	8656500	8815300	5550	602	5204	11071	27104;27105	27104		2	9606
GQPVAPYNTTQFLMDDHDQEEPDLK	1	0	Oxidation (M)	2903.292	0.29196744	300	O94992	HEXIM1	Protein HEXIM1	yes	yes	0	1	0	4	0				1													17.301	17.301	3	0.0090703	11565	DP690-4	53.381	39.975			0.7523	0.80738	NaN	1	0	Median	4737200	2629000	2108200	5551	300	5205	11072	27106;27107	27107	313	2	9606
GQSEDPGSLLSLFR	0	1	Unmodified	1504.7522	0.75217174	414	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	7.5	4.03			1	1							1	1					22.227	22.227	2	3.4209E-05	17775	DP690-3	132.86	92.989			1.066	1.2444	16.352	4	0	Median	89568000	45011000	44557000	5552	414	5206	11073;11074;11075;11076	27108;27109;27110;27111;27112;27113;27114;27115;27116;27117;27118;27119;27120;27121	27118		14	9606
GQSGIIYCFSQK	1	0	Unmodified	1386.6602	0.66018561	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	12	0												1					16.637	16.637	2	0.0047907	11288	DP690-12	86.189	68.356			0.80887	0.94994	NaN	1	0	Median	90617000	59556000	31062000	5553	751	5207	11077	27122;27123	27122		2	9606
GQSPAGDGSPEPPTPR	0	1	Unmodified	1548.7168	0.71684887	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	10.5	0.866									1		3						11.699	11.699	2	7.7218E-13	4529	DP690-11	246.51	173.9			0.51712	0.63455	6.1892	2	0	Median	107300000	20868000	86429000	5554	2127	5208	11078;11079;11080;11081	27124;27125;27126;27127;27128;27129;27130;27131;27132;27133;27134	27129		11	9606
GQTGGDVNVEMDAAPGVDLSR	0	1	Oxidation (M)	2102.9539	0.95386103	40;50	CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8	KRT16	Keratin, type I cytoskeletal 16	no	no	0	1	0	13	3										1						1	15.864	15.864	2	1.0046E-23	9654	DP690-16	208.38	150.86		+	NaN	NaN	NaN	0	0	Median	50641000	50641000	0	5555	40;50	5209	11082;11083	27135;27136;27137;27138	27138	44	4	9606
GQTHTLEDFQR	0	1	Unmodified	1330.6266	0.6265773	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	15	0															2		12.38	12.38	2;3	2.9008E-06	5147	DP690-15	189.57	161.8			0.86361	0.96071	2.3264	2	0	Median	225730000	118620000	107110000	5556	1953	5210	11084;11085	27139;27140;27141;27142;27143;27144	27143		6	9606
GQTLTLTQQQR	0	1	Unmodified	1272.6786	0.67861287	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	10.8	0.433										1	3						12.667	12.667	2	2.1395E-10	6054	DP690-11	176.38	122.63			NaN	NaN	NaN	0	0	Median	73473000	15741000	57732000	5557	1068	5211	11086;11087;11088;11089	27145;27146;27147;27148;27149;27150	27148		6	9606
GQTSTYGFLK	1	0	Unmodified	1100.5502	0.55022446	1929	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	4	0				1													11.286	11.286	2	0.050147	3780	DP690-4	64.207	8.6767			0.94821	1.0377	NaN	1	0	Median	12472000	6112900	6359200	5558	1929	5212	11090	27151	27151		1	9606
GQVCVMIHSGSR	0	1	Unmodified	1329.6282	0.62817398	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	12	0												1					11.7	11.7	2	0.0062322	4493	DP690-12	82.489	50.618			0.80739	0.98126	NaN	1	0	Median	13565000	7840400	5724900	5559	2475	5213	11091	27152	27152		1	9606
GQVCVMIHSGSR	0	1	Oxidation (M)	1345.6231	0.6230886	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	1	0	12	0												1					10.583	10.583	3	0.014725	2942	DP690-12	84.821	59.199			NaN	NaN	NaN	0	0	Median	0	0	0	5560	2475	5213	11092	27153	27153	2916	1	9606
GQVEVFALR	0	1	Unmodified	1017.5607	0.56072956	1972	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	13	0													1				16.89	16.89	2	0.012713	11307	DP690-13	107.9	51.462			NaN	NaN	NaN	0	0	Median	38161000	38161000	0	5561	1972	5214	11093	27154;27155	27154		2	9606
GQVFDVGPR	0	1	Unmodified	973.49813	0.49812931	610	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	6	0						1											14.552	14.552	2	0.0019079	7591	DP690-6	137.18	80.002			NaN	NaN	NaN	0	0	Median	50923000	50923000	0	5562	610	5215	11094	27156;27157	27157		2	9606
GQVGGDVNVEMDAAPGVDLSR	0	1	Oxidation (M)	2100.9746	0.97459647	29	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	no	no	0	1	0	4	3.56	1	1							1								16.457	16.457	2	7.0113E-05	9511	DP690-2	122.16	91.594		+	NaN	NaN	NaN	0	0	Median	5566100	5566100	0	5563	29	5216	11095;11096;11097	27158;27159;27160;27161;27162	27159	30	5	9606
GQVGGEINVEMDAAPGVDLSR	0	1	Oxidation (M)	2129.0059	0.005896599	45	CON__Q04695;Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	1	0	13	0													1				17.28	17.28	2	1.2674000000000001E-31	11852	DP690-13	215.37	162.58		+	NaN	NaN	NaN	0	0	Median	12692000	12692000	0	5564	45	5217	11098	27163;27164	27163	57	2	9606
GQVLNSDELQELYEGLR	0	1	Unmodified	1961.9694	0.96943474	101	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	6	0						1											21.472	21.472	2	0.0010705	15723	DP690-6	91.743	78.33			0.97724	1.0793	NaN	1	0	Median	1860200	763920	1096300	5565	101	5218	11099	27165	27165		1	9606
GQVLSTINTNQMNNTHAAVSPCGR	0	1	Oxidation (M)	2585.2075	0.20746673	2489	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	1	0	13	0													1				13.336	13.336	3	0.00042957	6471	DP690-13	82.593	67.431			0.76873	0.93567	NaN	1	0	Median	45705000	23339000	22366000	5566	2489	5219	11100	27166;27167;27168;27169	27166	2927	4	9606
GQVLSTINTNQMNNTHAAVSPCGR	0	1	Unmodified	2569.2126	0.21255211	2489	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	13	0													1				14.577	14.577	3	4.0943E-10	8151	DP690-13	145.44	134.61			0.6814	0.83404	NaN	1	0	Median	33737000	18164000	15573000	5567	2489	5219	11101	27170;27171;27172;27173;27174;27175	27172		6	9606
GQVPPLVTTNFLVK	1	0	Unmodified	1511.8712	0.87116466	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	7	4			1								1						19.726	19.726	2	0.00018283	16213	DP690-11	118.28	118.28			0.71236	0.77288	19.227	2	0	Median	282850000	156240000	126610000	5568	883	5220	11102;11103	27176;27177;27178;27179;27180;27181;27182;27183;27184	27178		9	9606
GQVQEVGWHDVAGWLGR	0	1	Unmodified	1892.9282	0.92817905	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	11	0											1						19.559	19.559	3	0.0076797	16061	DP690-11	60.307	38.466			0.44536	0.53406	NaN	1	0	Median	27614000	15394000	12219000	5569	518	5221	11104	27185	27185		1	9606
GQVSESEDSITK	1	0	Unmodified	1278.5939	0.59393976	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0.816									1	1	1						11.374	11.374	2	0.00010417	3694	DP690-9	119.22	92.434			0.78607	0.92882	15.96	3	0	Median	302260000	167280000	134980000	5570	311	5222	11105;11106;11107	27186;27187;27188;27189;27190;27191;27192;27193;27194;27195	27194		10	9606
GQVVTVHLQTSLENGTR	0	1	Unmodified	1837.9646	0.96462413	1271	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	13	0													1				14.895	14.895	3	5.9895E-05	8577	DP690-13	117.07	117.07			1.0537	1.28	NaN	1	0	Median	51315000	28079000	23236000	5571	1271	5223	11108	27196;27197	27196		2	9606
GQYFGELALVTNKPR	1	1	Unmodified	1691.8995	0.89950468	485	P13861;P31323	PRKAR2A;PRKAR2B	cAMP-dependent protein kinase type II-alpha regulatory subunit;cAMP-dependent protein kinase type II-beta regulatory subunit	yes	no	0	0	1	13	0													1				17.204	17.204	3	4.8468E-06	11796	DP690-13	128.73	92.955			0.78786	0.90735	NaN	1	0	Median	75148000	43571000	31577000	5572	485	5224	11109	27198;27199;27200;27201	27200		4	9606
GQYISPFHDIPIYADKDVFHMVVEVPR	1	1	Oxidation (M)	3187.5801	0.58009138	1320	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	1	1	6	0						1											19.5	19.5	4	0.00047139	13474	DP690-6	89.803	50.68			NaN	NaN	NaN	0	0	Median	3405200	3405200	0	5573	1320	5225	11110	27202;27203	27202	2039	2	9606
GRDIVVLGVEK	1	1	Unmodified	1183.6925	0.69247202	115	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	1	15	0															1		14.008	14.008	2	0.010516	7423	DP690-15	92.611	21.11			0.83554	0.97325	NaN	1	0	Median	21701000	12242000	9459200	5574	115	5226	11111	27204;27205	27205		2	9606
GREDVALEQDTYWR	0	2	Unmodified	1736.8118	0.81181188	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	1	9	0									1								15.905	15.905	3	0.012053	9815	DP690-9	64.52	36.467			0.7247	0.78555	NaN	1	0	Median	13664000	7596900	6066700	5575	1048	5227	11112	27206	27206		1	9606
GREPASCEDLCGGGVGADGGGSDR	0	2	Unmodified	2334.9553	0.95533437	1348	Q15746	MYLK	Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form	yes	yes	0	0	1	10	0										1							12.303	12.303	3	0.0029262	5567	DP690-10	93.392	70.346			NaN	NaN	NaN	0	0	Median	13515000	0	13515000	5576	1348	5228	11113	27207;27208	27207		2	9606
GRHGSGSGHSSSYGQHGSGSGWSSSSGR	0	2	Unmodified	2689.1362	0.13622735	54	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	1	1	0	1																10.26	10.26	5	0.00388	2072	DP690-1	67.478	51.972		+	NaN	NaN	NaN	0	0	Median	1761000	1761000	0	5577	54	5229	11114	27209;27210	27209		2	9606
GRLPLLAVCDYK	1	1	Unmodified	1403.7595	0.75950572	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0.707									1	2	1						16.66	16.66	2;3	0.010779	11897	DP690-11	94.82	94.82			1.0021	1.1879	58.872	4	0	Median	457950000	230740000	227210000	5578	1319	5230	11115;11116;11117;11118	27211;27212;27213;27214;27215;27216;27217;27218;27219;27220	27218		10	9606
GRNEGLSSGTLSK	1	1	Unmodified	1304.6684	0.66844211	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	1	2	0		1															10.503	10.503	2	0.069409	2537	DP690-2	75.788	48.899			1.1081	1.0909	NaN	1	0	Median	3580100	1844300	1735800	5579	283	5231	11119	27221	27221		1	9606
GRQPGAPGGPQPPGSDR	0	2	Unmodified	1629.7972	0.79716487	2036	Q9BX95	SGPP1	Sphingosine-1-phosphate phosphatase 1	yes	yes	0	0	1	11.5	2.5									1					1			10.295	10.295	3	0.00022661	2524	DP690-14	102.39	78.678			0.54683	0.61717	0.11233	2	0	Median	49704000	32976000	16728000	5580	2036	5232	11120;11121	27222;27223;27224;27225;27226	27223		5	9606
GRVPYPGMVNR	0	2	Oxidation (M)	1260.6397	0.63972494	412;477	P07947;P12931	YES1;SRC	Tyrosine-protein kinase Yes;Proto-oncogene tyrosine-protein kinase Src	no	no	0	1	1	12	0												1					11.006	11.006	3	0.0077546	3423	DP690-12	72.321	52.331			0.66581	0.75492	NaN	1	0	Median	47348000	27433000	19915000	5581	412;477	5233	11122	27227;27228;27229;27230	27228	454	4	9606
GSADNVTVMVVR	0	1	Oxidation (M)	1262.6289	0.62888548	2087	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	1	0	13	0													1				13.641	13.641	2	0.0032051	6824	DP690-13	95.573	74.703			0.98338	1.1755	NaN	1	0	Median	97148000	50410000	46739000	5582	2087	5234	11123	27231;27232	27231	2599	2	9606
GSADNVTVMVVR	0	1	Unmodified	1246.634	0.63397086	2087	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	13	0													1				15.506	15.506	2	0.00090574	9481	DP690-13	106.4	82.245			0.71889	0.87552	NaN	1	0	Median	44227000	26682000	17546000	5583	2087	5234	11124	27233;27234	27234		2	9606
GSAFAIGSDGLCCQSR	0	1	Unmodified	1684.7297	0.72973851	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	7	4			1								1						16.541	16.541	2	1.686E-17	11696	DP690-11	222.2	190.16			0.90238	1.0361	18.387	2	0	Median	180940000	107840000	73092000	5584	1768	5235	11125;11126	27235;27236;27237;27238;27239;27240	27239		6	9606
GSAFSTSISK	1	0	Unmodified	983.49238	0.49237523	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	8	4				1								1					12.756	12.756	2	0.00063119	5753	DP690-12	114.89	92.935			0.85553	0.8772	12.86	2	0	Median	1202400000	617160000	585230000	5585	2434	5236	11127;11128	27241;27242;27243;27244;27245;27246;27247;27248	27245		8	9606
GSATNYITR	0	1	Unmodified	981.48796	0.48795855	94	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	12	0												2					11.801	11.801	2	0.019022	4660	DP690-12	80.455	52.246			3.7785	4.4786	NaN	1	0	Median	40868000	11135000	29734000	5586	94	5237	11129;11130	27249;27250	27249		2	9606
GSCSEPVSFTTHSCAPECPFPPK	1	0	Unmodified	2578.0927	0.092679471	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	10	0										1							15.324	15.324	3	0.012055	10029	DP690-10	71.527	45.946			NaN	NaN	NaN	0	0	Median	18794000	18794000	0	5587	1399	5238	11131	27251	27251		1	9606
GSCVTQVGLLESVYEMFR	0	1	Oxidation (M)	2089.9813	0.98126175	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									1	1							23.257	23.257	2	2.5711E-10	18654	DP690-9	161.04	135.31			0.79508	0.99404	11.045	2	0	Median	31708000	16846000	14862000	5588	1046	5239	11132;11133	27252;27253;27254;27255;27256	27255	1605	5	9606
GSCVTQVGLLESVYEMFR	0	1	Unmodified	2073.9863	0.98634713	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.25	0.433									3	1							25.328	25.328	2	1.6963E-09	23520	DP690-10	145.49	115.94			0.89881	1.1017	3.8901	2	0	Median	6717700	3905500	2812200	5589	1046	5239	11134;11135;11136;11137	27257;27258;27259;27260;27261;27262;27263;27264;27265	27258		9	9606
GSDELFSTCVTNGPFIMSSNSASAANGNDSKK	2	0	Oxidation (M)	3308.4561	0.45614901	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	1	1	12	0												1					17.923	17.923	3	3.332E-09	12972	DP690-12	121.59	110.25			0.92578	1.0831	NaN	1	0	Median	25038000	12177000	12861000	5590	595	5240	11138	27266;27267;27268;27269;27270;27271	27266	789	6	9606
GSDEVQILEMPSK	1	0	Oxidation (M)	1447.6865	0.68645994	2047	Q9BYB4	GNB1L	Guanine nucleotide-binding protein subunit beta-like protein 1	yes	yes	0	1	0	6	0						1											15.387	15.387	2	0.0002014	8538	DP690-6	149.94	98.416			0.79094	0.88381	NaN	1	0	Median	31515000	17821000	13694000	5591	2047	5241	11139	27272;27273;27274;27275	27275	2568	4	9606
GSDEVQILEMPSK	1	0	Unmodified	1431.6915	0.69154532	2047	Q9BYB4	GNB1L	Guanine nucleotide-binding protein subunit beta-like protein 1	yes	yes	0	0	0	6	0						1											17.38	17.38	2	0.00045109	10964	DP690-6	109.39	83.343			1.0273	1.1822	NaN	1	0	Median	12077000	5533000	6544400	5592	2047	5241	11140	27276;27277	27276		2	9606
GSDFDCELR	0	1	Unmodified	1097.4448	0.44477311	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	11.6	3.93				1								1	1	1	1		14.246	14.246	2	2.5419E-05	7472	DP690-4	164.72	145.02			0.89981	0.99698	11.739	4	0	Median	4065599999.9999995	2144999999.9999998	1920699999.9999998	5593	959	5242	11141;11142;11143;11144;11145	27278;27279;27280;27281;27282;27283;27284;27285;27286;27287;27288;27289;27290;27291;27292;27293	27291		16	9606
GSDLDPEEPIKVEEPEPVK	2	0	Unmodified	2106.0368	0.036845601	1824	Q96BD8	SKA1	Spindle and kinetochore-associated protein 1	yes	yes	0	0	1	15	0															1		15.942	15.942	3	0.0002193	10005	DP690-15	98.796	75.77			0.44137	0.50508	NaN	1	0	Median	13247000	7830800	5416000	5594	1824	5243	11146	27294;27295	27294		2	9606
GSELQNYFTK	1	0	Unmodified	1185.5666	0.5666028	943	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	12	0												1					16.534	16.534	2	0.015356	11127	DP690-12	76.17	36.524			1.1416	1.3621	NaN	1	0	Median	67213000	31169000	36044000	5595	943	5244	11147	27296	27296		1	9606
GSFSEQGINEFLR	0	1	Unmodified	1482.7103	0.71030693	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	13	0													1				19.219	19.219	2	2.2691E-11	14336	DP690-13	280.55	224.54			0.78539	0.83795	NaN	1	0	Median	847580000	473630000	373950000	5596	1318	5245	11148	27297;27298;27299	27297		3	9606
GSGDVCGVLALAPGTNAGDGAR	0	1	Unmodified	2013.9538	0.95380145	1741	Q8WUY8	NAT14	N-acetyltransferase 14	yes	yes	0	0	0	16	0																1	18.092	18.092	2	3.8928E-05	12345	DP690-16	125.36	91.356			0.7353	0.8629	NaN	1	0	Median	4415600	2668000	1747700	5597	1741	5246	11149	27300;27301	27300		2	9606
GSGFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEK	1	0	Unmodified	3246.4926	0.4926096	2497	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	12	0												1					13.263	13.263	4	4.5356E-10	6566	DP690-12	125.82	113.33			0.69805	0.83237	NaN	1	0	Median	57368000	35282000	22086000	5598	2497	5247	11150	27302;27303	27302		2	9606
GSGGLFSPSTAHVPDGALGQR	0	1	Unmodified	2009.9919	0.99190151	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	11	0											1						16.397	16.397	3	0.07802	11509	DP690-11	32.702	19.761			0.68456	0.82061	NaN	1	0	Median	58245000	33767000	24479000	5599	2065	5248	11151	27304	27304		1	9606
GSGIFDESTPVQTR	0	1	Unmodified	1492.7158	0.71578623	2139	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	10	3.56							1	1							1		15.873	15.873	2	7.8405E-05	9870	DP690-15	163.12	137.07			0.74196	0.89243	18.268	3	0	Median	114600000	61251000	53354000	5600	2139	5249	11152;11153;11154	27305;27306;27307;27308;27309;27310;27311;27312	27306		8	9606
GSGPPPTEEEEGER	0	1	Unmodified	1469.627	0.62703081	2417	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	10	0										1							10.519	10.519	2	7.0358E-06	3035	DP690-10	158.56	135.24			NaN	NaN	NaN	0	0	Median	25472000	25472000	0	5601	2417	5250	11155	27313;27314	27313		2	9606
GSGQGDSLYPVGYLDK	1	0	Unmodified	1654.7839	0.7838658	1418	Q5J8M3	EMC4	ER membrane protein complex subunit 4	yes	yes	0	0	0	16	0																1	17.808	17.808	2	0.028184	12069	DP690-16	59.225	26.186			1.1832	1.3855	NaN	1	0	Median	13483000	6226100	7257300	5602	1418	5251	11156	27315;27316	27315		2	9606
GSGSGQSPSSGQHGTGFGR	0	1	Unmodified	1746.767	0.76698696	54	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	1	0	1																10.356	10.356	3	0.011018	2221	DP690-1	96.153	73.622		+	NaN	NaN	NaN	0	0	Median	6957200	6957200	0	5603	54	5252	11157	27317	27317		1	9606
GSGTASDDEFENLR	0	1	Unmodified	1496.6379	0.63792984	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															15.169	15.169	2	4.1281E-05	7931	DP690-2	134.3	109.47			1.4892	1.5593	NaN	1	0	Median	5977800	2652100	3325700	5604	1555	5253	11158	27318;27319;27320;27321	27320		4	9606
GSIGPTVLEVFNTLLK	1	0	Unmodified	1686.9556	0.95562257	1253	Q14156	EFR3A	Protein EFR3 homolog A	yes	yes	0	0	0	11	0											1						25.929	25.929	2	0.0033345	23929	DP690-11	80.469	56.792			0.5995	0.72522	NaN	1	0	Median	5356500	3234800	2121700	5605	1253	5254	11159	27322;27323;27324;27325	27325		4	9606
GSIINISSIVGK	1	0	Unmodified	1186.6921	0.69213767	1770	Q92506	HSD17B8	Estradiol 17-beta-dehydrogenase 8	yes	yes	0	0	0	15	0															1		19.373	19.373	2	0.027655	14460	DP690-15	68.536	68.536			0.81754	0.95798	NaN	1	0	Median	7517800	3851300	3666500	5606	1770	5255	11160	27326	27326		1	9606
GSIYLAGQNIQDVSLESLR	0	1	Unmodified	2062.0695	0.069483134	233	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	9.5	0.5									1	1							20.447	20.447	2	1.125E-12	17350	DP690-10	178.67	178.67			0.8518	1.0624	25.393	2	0	Median	25252000	15345000	9906700	5607	233	5256	11161;11162	27327;27328	27327		2	9606
GSLCSGCQKPITGR	1	1	Unmodified	1519.7235	0.72353092	786	P49023	PXN	Paxillin	yes	yes	0	0	1	4	0				1													10.447	10.447	3	0.0022598	2836	DP690-4	95.264	67.601			0.94059	1.0728	NaN	1	0	Median	32763000	16755000	16008000	5608	786	5257	11163	27329	27329		1	9606
GSLDYRPLTTADPIDEHR	0	2	Unmodified	2055.0021	0.0021318501	62	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	1	11	0											2						15.375	15.375	3;4	0.022951	9925	DP690-11	67.252	28.049			NaN	NaN	NaN	0	0	Median	99387000	99387000	0	5609	62	5258	11164;11165	27330;27331;27332;27333	27333		4	9606
GSLEEAEAER	0	1	Unmodified	1089.4938	0.49383179	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.5	0.5										1	1						12.203	12.203	2	0.001795	5416	DP690-10	103.55	39.339			0.91722	1.1044	6.7473	2	0	Median	292950000	153140000	139810000	5610	2190	5259	11166;11167	27334;27335;27336;27337;27338;27339	27335		6	9606
GSLESPATDVFGSTEEGEKR	1	1	Unmodified	2094.9706	0.97055695	73	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	1	5	0					1												15.808	15.808	3	0.043568	8989	DP690-5	62.739	26.157			NaN	NaN	NaN	0	0	Median	14538000	0	14538000	5611	73	5260	11168	27340	27340		1	9606
GSLGGGFSSGGFSGGSFSR	0	1	Unmodified	1706.7649	0.76486169	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	8.36	4.88	1	1	1	1	1	1	1		1	1		1	1	1	1	1	17.414	17.414	2	4.6150999999999997E-38	10614	DP690-2	231.07	194.75		+	NaN	NaN	NaN	0	0	Median	437610000	437610000	0	5612	42	5261	11169;11170;11171;11172;11173;11174;11175;11176;11177;11178;11179;11180;11181;11182	27341;27342;27343;27344;27345;27346;27347;27348;27349;27350;27351;27352;27353;27354;27355;27356;27357;27358;27359;27360;27361;27362;27363;27364;27365	27354		25	9606
GSMQELDMLAGLR	0	1	Oxidation (M)	1435.6799	0.67993477	2209	Q9NSA2	KCND1	Potassium voltage-gated channel subfamily D member 1	yes	yes	0	1	0	12	0												1					10.704	10.704	3	0.042934	3139	DP690-12	65.563	65.563			0.63855	0.75912	NaN	1	0	Median	36121000	20682000	15439000	5613	2209	5262	11183	27366	27366	2685	0	9606
GSNEEDTDTPLFIGK	1	0	Unmodified	1621.7471	0.74714594	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	9.75	0.433									1	3							17.01	17.01	2	0.00071624	12454	DP690-10	103.21	82.181			0.81888	1.0116	NaN	1	0	Median	153850000	70708000	83138000	5614	13	5263	11184;11185;11186;11187	27367;27368;27369;27370;27371;27372;27373	27367		7	9606
GSNLDAPEPYR	0	1	Unmodified	1217.5677	0.56766543	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							13.328	13.328	2	0.00037537	7100	DP690-10	117.53	78.221			0.68307	0.82097	NaN	1	0	Median	196700000	115870000	80832000	5615	591	5264	11188	27374;27375;27376	27376		3	9606
GSNNVALGYDEGSIIVK	1	0	Unmodified	1734.8788	0.87882882	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	3	0			1														17.467	17.467	2	4.7922E-06	11918	DP690-3	141.54	96.458			2.1186	2.2471	NaN	1	0	Median	32267000	9669600	22597000	5616	670	5265	11189	27377;27378;27379	27379		3	9606
GSNSLPLLR	0	1	Unmodified	955.54508	0.5450795	910	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	12	3									1						1		15.922	15.922	2	0.019566	9748	DP690-9	79.906	39.905			0.89313	1.1145	NaN	1	0	Median	78445000	71103000	7341300	5617	910	5266	11190;11191	27380;27381;27382;27383;27384;27385;27386	27383		7	9606
GSNTIASAAADKIPGLLGVFQK	2	0	Unmodified	2157.1794	0.17936793	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	3	0			1														20.776	20.776	3	1.7931E-06	16154	DP690-3	128.66	116			0.99305	1.0697	NaN	1	0	Median	30361000	15368000	14993000	5618	892	5267	11192	27387;27388;27389;27390	27390		4	9606
GSPFQEEEGSALK	1	0	Unmodified	1377.6412	0.64122431	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										1							14.943	14.943	2	0.0021413	9486	DP690-10	107.11	15.062			0.75878	0.93723	NaN	1	0	Median	79509000	46564000	32944000	5619	781	5268	11193	27391;27392	27391		2	9606
GSPGLLDPCEKDPFDTLATMTDQQR	1	1	Unmodified	2791.2793	0.27929427	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	1	11	0											1						20.689	20.689	3	0.0014613	17577	DP690-11	63.906	49.642			0.83273	1.0293	NaN	1	0	Median	23307000	11831000	11475000	5620	1889	5269	11194	27393	27393		1	9606
GSPLNAAPYGIESMSQDTEVR	0	1	Oxidation (M)	2237.027	0.027025972	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	1	0	13	0													1				16.666	16.666	2	8.828299999999998E-19	11013	DP690-13	185.86	157.09			0.70967	0.84949	NaN	1	0	Median	94650000	62673000	31977000	5621	521	5270	11195	27394;27395;27396;27397;27398;27399;27400	27398	672	7	9606
GSPLNAAPYGIESMSQDTEVR	0	1	Unmodified	2221.0321	0.032111349	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	13	0													1				18.573	18.573	2	8.263E-29	13593	DP690-13	215.37	197.88			0.7075	0.85909	NaN	1	0	Median	52565000	32695000	19870000	5622	521	5270	11196	27401;27402;27403;27404	27403		4	9606
GSPLVVISQGK	1	0	Unmodified	1083.6288	0.62880913	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	4	0				1													15.292	15.292	2	0.0021587	8938	DP690-4	96.665	73.884			0.83141	0.89248	NaN	1	0	Median	40799000	22172000	18627000	5623	1359	5271	11197	27405;27406;27407	27407		3	9606
GSPNTASAEATLPR	0	1	Unmodified	1370.679	0.6790068	1500	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	0	0	3	0			1														13.19	13.19	2	0.00014047	6188	DP690-3	120.57	89.961			0.88983	1.0175	NaN	1	0	Median	14139000	7947100	6191800	5624	1500	5272	11198	27408;27409;27410;27411	27409		4	9606
GSPSSYTVQTAQDQAGVTSIR	0	1	Unmodified	2152.0396	0.039639568	1866	Q96H55	MYO19	Unconventional myosin-XIX	yes	yes	0	0	0	11	0											1						15.576	15.576	2	6.0699E-44	10244	DP690-11	272.74	225.31			0.81882	0.97715	NaN	1	0	Median	35237000	18606000	16631000	5625	1866	5273	11199	27412;27413;27414;27415;27416	27412		5	9606
GSQFGQSCCLR	0	1	Unmodified	1298.5496	0.5495893	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	6	4		1								1							12.739	12.739	2	0.00011465	5049	DP690-2	174.86	149.74			0.98264	1.1201	5.0889	2	0	Median	94430000	53317000	41113000	5626	408	5274	11200;11201	27417;27418;27419;27420;27421;27422;27423;27424	27424		8	9606
GSQGPLPFHEK	1	0	Unmodified	1195.5986	0.59857163	2326	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	15	0															3		12.168	12.168	2;3	0.0019005	5035	DP690-15	108.43	82.874			1.396	1.5754	135.1	2	0	Median	234850000	96469000	138380000	5627	2326	5275	11202;11203;11204	27425;27426;27427;27428;27429	27427		5	9606
GSQGYLVVR	0	1	Unmodified	977.52943	0.52942943	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	9	0									1								13.896	13.896	2	0.021779	6964	DP690-9	77.674	40.125			0.89169	1.0698	NaN	1	0	Median	36314000	20618000	15696000	5628	295	5276	11205	27430;27431;27432	27431		3	9606
GSRGGSGGSYGGGGSGGGYGGGSGSR	0	2	Unmodified	2090.875	0.87503386	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	1	0	1																10.332	10.332	3	1.1878E-08	2181	DP690-1	127.16	97.056		+	NaN	NaN	NaN	0	0	Median	8376200	8376200	0	5629	667	5277	11206	27433;27434	27433		2	9606
GSSAAGLTASVMR	0	1	Unmodified	1206.6027	0.60267073	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	7	4			1								1						14.853	14.853	2	0.0043254	8473	DP690-3	86.189	61.052			0.80358	0.91101	0.45272	2	0	Median	312650000	171070000	141570000	5630	652	5278	11207;11208	27435;27436	27436		2	9606
GSSAGGGGSGAAAATAATAGGQHR	0	1	Unmodified	1926.8892	0.88922736	87	O00458	IFRD1	Interferon-related developmental regulator 1	yes	yes	0	0	0	13	0													1				10.448	10.448	3	1.6928E-06	2726	DP690-13	128.4	113.44			0.92908	1.1342	NaN	1	0	Median	38848000	20310000	18539000	5631	87	5279	11209	27437;27438;27439;27440	27439		4	9606
GSSASLVLKR	1	1	Unmodified	1016.5978	0.59784335	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	10	0										1							10.959	10.959	2	0.0013732	3666	DP690-10	114.89	76.088			0.81009	0.93276	NaN	1	0	Median	288190000	150740000	137450000	5632	1070	5280	11210	27441;27442;27443;27444	27444		4	9606
GSSGAPVYVDLAYIPNHCSGK	1	0	Unmodified	2191.0368	0.036802797	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	15	0															1		17.314	17.314	3	0.00039486	11766	DP690-15	87.772	87.772			0.62805	0.74126	NaN	1	0	Median	24313000	14528000	9785300	5633	1048	5281	11211	27445;27446;27447;27448;27449	27445		5	9606
GSSGGGCFGGSSGGYGGLGGFGGGSFR	0	1	Unmodified	2341.9771	0.97705609	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	4	0				2													18.521	18.521	2	0.00041521	13014	DP690-4	102.59	85.512		+	NaN	NaN	NaN	0	0	Median	1233800	1233800	0	5634	42	5282	11212;11213	27450;27451	27450		2	9606
GSSGGSGAKPSDAASEAAR	1	1	Unmodified	1661.7605	0.7605046	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	10	0										1							10.306	10.306	3	0.041577	2645	DP690-10	53.554	31.779			0.86307	1.0983	NaN	1	0	Median	65576000	38560000	27017000	5635	1111	5283	11214	27452	27452		1	9606
GSSGVGLTAAVLR	0	1	Unmodified	1186.667	0.66698555	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	7	4			1								1						16.44	16.44	2	0.00033238	11501	DP690-11	112.83	75.285			0.92275	1.0776	NaN	1	0	Median	165520000	84685000	80838000	5636	653	5284	11215;11216	27453;27454;27455	27453		3	9606
GSSGVGLTAAVTTDQETGER	0	1	Unmodified	1934.9181	0.91812745	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	8.71	3.41			1	1					1		3	1					15.03	15.03	2	2.9525000000000003E-161	9396	DP690-11	362.62	301.98			0.89422	1.0498	13.269	4	0	Median	292720000	60765000	231950000	5637	581	5285	11217;11218;11219;11220;11221;11222;11223	27456;27457;27458;27459;27460;27461;27462;27463;27464;27465;27466;27467;27468;27469;27470;27471;27472;27473;27474;27475;27476;27477;27478;27479	27457		24	9606
GSSGVGLTAAVTTDQETGERR	0	2	Unmodified	2091.0192	0.019238477	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	11	0											1						13.673	13.673	3	0.05542	7459	DP690-11	66.068	40.478			0.65065	0.80207	NaN	1	0	Median	26401000	13305000	13096000	5638	581	5286	11224	27480;27481	27480		2	9606
GSSSANPVNSVR	0	1	Unmodified	1173.5738	0.57381344	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11	0											1						10.806	10.806	2	8.2855E-05	3266	DP690-11	132.88	86.469			0.81086	0.87247	NaN	1	0	Median	454520000	248960000	205560000	5639	1950	5287	11225	27482;27483;27484;27485;27486;27487	27484		6	9606
GSSSATSVSAVPADR	0	1	Unmodified	1390.6688	0.66883604	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	0	11.8	0.829											2	1	1				11.608	11.608	2	1.1588E-05	4518	DP690-11	128.08	98.608			0.75367	0.8981	7.9774	3	0	Plateau	210130000	108980000	101150000	5640	144	5288	11226;11227;11228;11229	27488;27489;27490;27491;27492;27493;27494	27491		7	9606
GSSSATSVSAVPADRK	1	1	Unmodified	1518.7638	0.76379906	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	1	11	0											1						10.445	10.445	3	0.028024	2723	DP690-11	50.053	31.596			1.0529	1.1406	NaN	1	0	Median	297830000	93066000	204760000	5641	144	5289	11230	27495;27496	27496		2	9606
GSSSGGGYSSGSSSYGSGGR	0	1	Unmodified	1739.6983	0.69829827	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	4.25	3.96	1	1	1								1						10.598	10.598	2	1.6234E-64	2670	DP690-2	269.05	232.38		+	NaN	NaN	NaN	0	0	Median	19378000	19378000	0	5642	44	5290	11231;11232;11233;11234	27497;27498;27499;27500	27499		4	9606
GSSVDGSPLLLFLR	0	1	Unmodified	1459.8035	0.80347903	1565	Q86U38	NOP9	Nucleolar protein 9	yes	yes	0	0	0	12	0												1					23.192	23.192	2	3.3947E-05	19699	DP690-12	132.25	132.25			0.80354	0.97909	NaN	1	0	Median	8837100	4830900	4006200	5643	1565	5291	11235	27501;27502;27503;27504	27504		4	9606
GSSWHETCFICHR	0	1	Unmodified	1675.6984	0.69837881	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	12	3.46						1								3			13.045	13.045	3;4	1.1082E-06	6207	DP690-14	193.62	178.93			1.0763	1.1766	13.558	4	0	Median	1333300000	625900000	707440000	5644	1258	5292	11236;11237;11238;11239	27505;27506;27507;27508;27509;27510;27511;27512;27513;27514;27515;27516	27511		12	9606
GSTAAQMSQALCLYK	1	0	Oxidation (M)	1643.7647	0.76472704	818	P50452	SERPINB8	Serpin B8	yes	yes	0	1	0	6	0						1											14.877	14.877	2	0.00023403	8048	DP690-6	142.97	118.59			NaN	NaN	NaN	0	0	Median	5216400	5216400	0	5645	818	5293	11240	27517;27518	27518	1226	2	9606
GSTAPVGGGAFPTIVER	0	1	Unmodified	1614.8366	0.83657007	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	9	4					1								1				17.283	17.283	2	2.5006E-09	11803	DP690-13	187.63	129.04			0.70401	0.75484	6.2969	2	0	Median	520900000	304410000	216490000	5646	1318	5294	11241;11242	27519;27520;27521;27522;27523;27524;27525;27526;27527	27519		9	9606
GSTAPVGGGAFPTIVEREPWDGR	0	2	Unmodified	2355.1608	0.16075776	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	1	13	0													1				18.404	18.404	3	0.00086473	13365	DP690-13	73.76	41.207			0.60223	0.69148	NaN	1	0	Median	273990000	170720000	103270000	5647	1318	5295	11243	27528;27529;27530	27529		3	9606
GSTDNLMDDIER	0	1	Oxidation (M)	1380.5827	0.58272315	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	4	0				1													14.245	14.245	2	0.00039187	7485	DP690-4	120.63	89.344			1.8514	2.0776	NaN	1	0	Median	32027000	9824700	22203000	5648	826	5296	11244	27531;27532	27531	1243	2	9606
GSTDNLMDDIER	0	1	Unmodified	1364.5878	0.58780853	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	4	0				1													17.459	17.459	2	0.0081213	11736	DP690-4	77.64	52.787			1.7396	2.0251	NaN	1	0	Median	9841400	3940800	5900600	5649	826	5296	11245	27533;27534	27533		2	9606
GSTLPDVTEVSTFFPFHEYFANAPQPIFK	1	0	Unmodified	3285.6023	0.60226661	202	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	10	0										1							24.119	24.119	3	2.1091E-05	22100	DP690-10	98.019	79.928			0.61883	0.75008	NaN	1	0	Median	7584100	4333600	3250500	5650	202	5297	11246	27535;27536;27537;27538;27539	27536		5	9606
GSTTATFAAVVLYVENER	0	1	Unmodified	1926.9687	0.96870646	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	4	0				1													23.17	23.17	2	0.00024168	18028	DP690-4	110.77	87.399			0.96539	1.105	NaN	1	0	Median	1874200	783350	1090800	5651	469	5298	11247	27540;27541;27542;27543	27541		4	9606
GSVAEAEDCYNTALR	0	1	Unmodified	1654.7257	0.72569899	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	7	4			1								1						15.389	15.389	2	8.3494E-07	9146	DP690-3	186.46	155.85			0.92597	1.0409	NaN	1	0	Median	8222200	4482400	3739700	5652	149	5299	11248;11249	27544;27545;27546;27547;27548;27549	27547		6	9606
GSVAGGAVYLVYDQELLGPSDK	1	0	Unmodified	2237.1216	0.12157828	1452	Q5XKP0	QIL1	Protein QIL1	yes	yes	0	0	0	16	0																1	20.97	20.97	2	0.00026127	15752	DP690-16	112.67	88.252			0.57368	0.6659	NaN	1	0	Median	1787700	1073600	714140	5653	1452	5300	11250	27550;27551;27552;27553	27550		4	9606
GSVDSNWIVGATLEK	1	0	Unmodified	1574.794	0.79403656	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	14	0														1			19.109	19.109	2	2.4624E-05	14469	DP690-14	152.96	106.16			1.0118	1.1927	NaN	1	0	Median	162610000	75349000	87266000	5654	348	5301	11251	27554;27555	27555		2	9606
GSVLEPEGTVEIK	1	0	Unmodified	1356.7137	0.71366097	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															15.949	15.949	2	0.0048585	8854	DP690-2	100.82	100.82			0.87422	0.87862	NaN	1	0	Median	7359700	3539200	3820600	5655	1179	5302	11252	27556;27557	27557		2	9606
GSVPNQMMPR	0	1	2 Oxidation (M)	1147.5114	0.51141288	1144	Q09472	EP300	Histone acetyltransferase p300	yes	yes	0	2	0	16	0																1	10.9	10.9	3	0.030034	3447	DP690-16	55.064	27.582			1.0404	1.2225	NaN	1	0	Median	3879400	1948600	1930700	5656	1144	5303	11253	27558;27559;27560	27558	1760;1761	3	9606
GSVQMDSTLQGDMR	0	1	2 Oxidation (M)	1555.6607	0.6606559	717	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	2	0	12	0												1					11.036	11.036	2	0.045317	3587	DP690-12	63.727	41.165			1.2996	1.5864	NaN	1	0	Median	6721900	2717700	4004200	5657	717	5304	11254	27561;27562	27562		2	9606
GSVSSEASELDKK	2	0	Unmodified	1335.6518	0.65178899	1720	Q8TDB6	DTX3L	E3 ubiquitin-protein ligase DTX3L	yes	yes	0	0	1	11	0											1						11.237	11.237	2	6.056E-05	3898	DP690-11	127.87	82.846			0.74385	0.88241	NaN	1	0	Median	39349000	16397000	22952000	5658	1720	5305	11255	27563;27564	27563		2	9606
GSVTLSEIR	0	1	Unmodified	960.52401	0.52400971	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.8	0.433										1	3						14.242	14.242	2	0.0016554	8378	DP690-10	118.74	46.866			0.85369	0.9676	NaN	1	0	Median	524280000	326300000	197980000	5659	2190	5306	11256;11257;11258;11259	27565;27566;27567;27568;27569;27570;27571;27572	27565		8	9606
GSVVNVNPTNTRPQSDTPEIR	0	2	Unmodified	2280.1458	0.14583597	343	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	1	10	0										1							13.945	13.945	3	0.031631	8043	DP690-10	74.793	35.844			NaN	NaN	NaN	0	0	Median	20401000	20401000	0	5660	343	5307	11260	27573;27574	27574		2	9606
GSYGDLGGPIITTQVTIPK	1	0	Unmodified	1916.0255	0.025493054	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	11.6	3.93				1								1	1	1	1		19.441	19.441	2	5.0229E-30	14677	DP690-13	241.3	241.3			0.73444	0.84801	15.827	5	0	Median	1108900000	625070000	483810000	5661	959	5308	11261;11262;11263;11264;11265	27575;27576;27577;27578;27579;27580;27581;27582;27583;27584;27585;27586;27587;27588;27589;27590;27591	27578		17	9606
GSYGLDLEAVR	0	1	Unmodified	1178.5932	0.5931519	153	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	3	0			1														17.433	17.433	2	0.057445	11880	DP690-3	59.426	27.071			1.072	1.2216	NaN	1	0	Median	12553000	5095000	7457800	5662	153	5309	11266	27592	27592		1	9606
GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR	0	1	Unmodified	3311.3008	0.30084566	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	7.67	4.29	1	1	1	1		1	1		1	1	1	1	1	1			12.407	12.407	3	1.4106E-53	5159	DP690-13	193.75	167.05		+	NaN	NaN	NaN	0	0	Median	270280000	270280000	0	5663	369	5310	11267;11268;11269;11270;11271;11272;11273;11274;11275;11276;11277;11278	27593;27594;27595;27596;27597;27598;27599;27600;27601;27602;27603;27604;27605;27606;27607;27608;27609;27610;27611;27612;27613;27614;27615;27616;27617;27618;27619;27620;27621	27601		29	9606
GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGR	0	2	Unmodified	4298.7127	0.71267915	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	8.33	3.45				1	1		1		1		1			1			11.365	11.365	4	3.6098E-11	3892	DP690-4	81.322	74.243		+	NaN	NaN	NaN	0	0	Median	80110000	80110000	0	5664	369	5311	11279;11280;11281;11282;11283;11284	27622;27623;27624;27625;27626;27627;27628;27629;27630;27631;27632;27633;27634;27635;27636	27626		15	9606
GSYNDFSFVTHTNR	0	1	Unmodified	1643.7328	0.73283328	2335	Q9UG56	PISD	Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain	yes	yes	0	0	0	14	0														1			15.754	15.754	3	0.00047347	9965	DP690-14	95.428	78.549			0.887	1.0669	NaN	1	0	Median	75919000	34677000	41242000	5665	2335	5312	11285	27637;27638;27639;27640	27640		4	9606
GSYSCEVTHEGSTVTK	1	0	Unmodified	1740.7625	0.76247843	47	CON__Q1RMN8			yes	yes	0	0	0	7	0							2										11.475	11.475	2;3	3.9125999999999997E-19	4074	DP690-7	232.78	179.18		+	NaN	NaN	NaN	0	0	Median	22505000	22505000	0	5666	47	5313	11286;11287	27641;27642;27643;27644;27645;27646	27645		6	
GSYVSIHSSGFR	0	1	Unmodified	1295.6258	0.62584901	63;1237	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	no	no	0	0	0	13	0													2				13.246	13.246	2;3	1.9019E-05	6249	DP690-13	129	97.715			0.90731	1.0094	14.47	2	0	Median	775620000	401250000	374370000	5667	63;1237	5314	11288;11289	27647;27648;27649;27650	27648		4	9606
GTAAILEYLR	0	1	Unmodified	1105.6132	0.61315906	2143	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	8	4				1								1					19.522	19.522	2	0.0084285	14117	DP690-4	85.862	60.986			0.75875	0.90151	5.5101	2	0	Median	17305000	9873000	7432300	5668	2143	5315	11290;11291	27651;27652	27652		2	9606
GTADVTHDLQEMKEESR	1	1	Oxidation (M)	1960.8796	0.87963345	464	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	yes	yes	0	1	1	10.6	1.4									2	2	1	1	1				11.755	11.755	3;4	1.0672E-07	4182	DP690-9	146.1	146.1			0.79286	0.98281	7.2914	7	0	Median	299410000	157330000	142080000	5669	464	5316	11292;11293;11294;11295;11296;11297;11298	27653;27654;27655;27656;27657;27658;27659;27660;27661;27662;27663;27664;27665;27666;27667;27668	27664	549	16	9606
GTAITHALTSASTLCQVEPVGR	0	1	Unmodified	2268.1532	0.15322954	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	11	0											1						17.051	17.051	3	4.3231E-11	12374	DP690-11	122.83	104.82			0.83924	0.97598	NaN	1	0	Median	166530000	98553000	67975000	5670	1941	5317	11299	27669;27670;27671	27669		3	9606
GTALVYHEDMTATR	0	1	Acetyl (Protein N-term);Oxidation (M)	1621.7406	0.74062078	1810	Q969S8	HDAC10	Histone deacetylase 10	yes	yes	1	1	0	4	0				1													14.935	14.935	2	2.8897E-05	8385	DP690-4	144.7	112.94			0.82514	0.91722	NaN	1	0	Median	38842000	21803000	17040000	5671	1810	5318	11300	27672;27673;27674	27673	2387	3	9606
GTATEPLMLMSVFCQTESFPAER	0	1	Unmodified	2601.1913	0.19133088	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	11	0											1						23.902	23.902	2	0.055117	21584	DP690-11	76.82	48.274			NaN	NaN	NaN	0	0	Median	0	0	0	5672	2302	5319	11301	27675	27675		1	9606
GTATFDGTAIANAVVK	1	0	Unmodified	1534.7991	0.79912193	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	10	0										1							18.109	18.109	2	2.4708E-06	14048	DP690-10	140.24	118.25			1.1466	1.3938	NaN	1	0	Median	184580000	94752000	89829000	5673	858	5320	11302	27676;27677;27678;27679	27677		4	9606
GTAYTFFTPGNLK	1	0	Unmodified	1415.7085	0.70851601	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11.7	1.49									1		3	4			1		18.795	18.795	2	8.3754E-14	14180	DP690-12	223.36	176.91			1.0241	1.2573	101.04	4	0	Median	531050000	145970000	385070000	5674	1793	5321	11303;11304;11305;11306;11307;11308;11309;11310;11311	27680;27681;27682;27683;27684;27685;27686;27687;27688;27689;27690;27691;27692;27693;27694	27688		15	9606
GTAYVVYEDIFDAK	1	0	Unmodified	1589.7613	0.76133944	2462	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	16	0																1	20.923	20.923	2	0.00099222	15688	DP690-16	100.93	100.93			0.84782	0.98853	NaN	1	0	Median	4559200	2601500	1957700	5675	2462	5322	11312	27695;27696;27697	27695		3	9606
GTDIMYTGTLDCWR	0	1	Oxidation (M)	1703.7283	0.72834153	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	1	0	11.5	2.5									1					1			18.038	18.038	2	5.6293E-06	12978	DP690-14	184.36	167.78			0.7776	0.94919	3.0847	2	0	Median	119690000	69381000	50312000	5676	381	5323	11313;11314	27698;27699;27700;27701;27702;27703;27704;27705	27699	404	8	9606
GTDIMYTGTLDCWR	0	1	Unmodified	1687.7334	0.73342691	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	14.5	0.5														1	1		19.368	19.368	2	8.0027E-05	14739	DP690-14	150.09	122.13			0.77797	0.93583	NaN	1	0	Median	76916000	44827000	32089000	5677	381	5323	11315;11316	27706;27707;27708	27707		3	9606
GTDTVAGLALIK	1	0	Unmodified	1157.6656	0.66558856	742	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	4	0				1													18.105	18.105	2	0.0061308	12402	DP690-4	82.749	24.153			0.80799	0.88475	NaN	1	0	Median	16494000	8528300	7965800	5678	742	5324	11317	27709;27710	27709		2	9606
GTDVNVFNTILTTR	0	1	Unmodified	1549.81	0.81002097	365	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	6	0						1											20.729	20.729	2	2.0226E-14	14844	DP690-6	227.36	167.26			0.90856	1.0428	NaN	1	0	Median	12181000	6557000	5624200	5679	365	5325	11318	27711;27712;27713;27714;27715	27715		5	9606
GTDVPKWISIMTER	1	1	Unmodified	1631.8341	0.83412723	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	14	0														1			19.669	19.669	3	6.5585E-06	15179	DP690-14	150.9	134.66			0.74897	0.91341	NaN	1	0	Median	60466000	35131000	25335000	5680	404	5326	11319	27716;27717;27718	27716		3	9606
GTEAGQVGEPGIPTGEAGPSCSSASDK	1	0	Unmodified	2545.1238	0.12383948	152	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	4	0				1													14.431	14.431	2	5.2263E-11	7821	DP690-4	147.1	139.13			1.2188	1.3066	NaN	1	0	Median	4311000	2423500	1887500	5681	152	5327	11320	27719;27720	27719		2	9606
GTEAGQVGEPGIPTGEAGPSCSSASDKLPR	1	1	Unmodified	2911.3618	0.36177834	152	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	1	4	0				1													14.829	14.829	3	2.4269000000000003E-35	8310	DP690-4	208.99	199.11			0.62349	0.7111	NaN	1	0	Median	9028400	4390500	4637900	5682	152	5328	11321	27721;27722;27723;27724;27725	27722		5	9606
GTEDITSPHGIPLDLLDR	0	1	Unmodified	1947.9902	0.99017018	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	13	0													1				19.355	19.355	3	3.2956E-05	14474	DP690-13	120.9	75.886			0.70804	0.83328	NaN	1	0	Median	130770000	77722000	53043000	5683	2431	5329	11322	27726;27727;27728;27729	27726		4	9606
GTEPFVTGVR	0	1	Unmodified	1061.5506	0.55055881	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	7	4			1								1						14.533	14.533	2	0.00012379	7968	DP690-3	139.97	75.403			0.83558	0.9316	3.299	2	0	Median	270900000	132200000	138700000	5684	883	5330	11323;11324	27730;27731;27732;27733;27734;27735	27732		6	9606
GTEVQVDDIKR	1	1	Unmodified	1258.6517	0.65172941	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	1	13	0													2				11.584	11.584	2;3	0.00010054	4157	DP690-13	118.23	69.632			0.8517	1.0143	10.408	2	0	Median	100830000	51569000	49258000	5685	2427	5331	11325;11326	27736;27737;27738;27739;27740;27741	27737		6	9606
GTGIAAQTAGIAAAAR	0	1	Unmodified	1398.7579	0.75792582	1054	P82912	MRPS11	28S ribosomal protein S11, mitochondrial	yes	yes	0	0	0	16	0																1	15.118	15.118	2	0.0028204	8655	DP690-16	122.34	83.594			NaN	NaN	NaN	0	0	Median	19904000	19904000	0	5686	1054	5332	11327	27742;27743	27742		2	9606
GTGIVSAPVPK	1	0	Unmodified	1024.5917	0.59169534	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	14.5	0.5														1	1		13.402	13.402	2	0.0013091	6612	DP690-14	104.01	76.76			0.76362	0.84573	3.1517	2	0	Median	892520000	503380000	389140000	5687	502	5333	11328;11329	27744;27745;27746;27747;27748;27749	27745		6	9606
GTGLQPGEEELPDIAPPLVTPDEPK	1	0	Unmodified	2598.3065	0.30647852	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	3	0			1														20.414	20.414	2	2.3022E-22	15654	DP690-3	180.39	162.43			0.50597	0.5442	NaN	1	0	Median	18822000	12495000	6326800	5688	746	5334	11330	27750;27751;27752;27753	27752		4	9606
GTHELTNPGIAEVTIRPDRK	1	2	Unmodified	2203.1709	0.17092851	2047	Q9BYB4	GNB1L	Guanine nucleotide-binding protein subunit beta-like protein 1	yes	yes	0	0	2	6	0						1											13.449	13.449	4	0.011049	6226	DP690-6	63.374	46.022			0.73153	0.78006	NaN	1	0	Median	28544000	17296000	11248000	5689	2047	5335	11331	27754	27754		1	9606
GTHTGVWVGVSGSETSEALSR	0	1	Unmodified	2116.0185	0.018510196	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															15.515	15.515	3	0.023136	8395	DP690-2	104.38	104.38			0.96681	1.0097	NaN	1	0	Median	13811000	7261700	6549100	5690	789	5336	11332	27755	27755		0	9606
GTIEILSDVQLIK	1	0	Unmodified	1427.8235	0.82354577	385	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	14	0														1			21.057	21.057	2	1.0051E-10	16902	DP690-14	228.64	192.73			0.92184	1.0776	NaN	1	0	Median	191080000	100400000	90675000	5691	385	5337	11333	27756;27757;27758;27759	27759		4	9606
GTILVGGGALATVLGLSQFAHYR	0	1	Unmodified	2300.2641	0.26410062	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	11	0											1						23.298	23.298	3	3.3655E-24	20898	DP690-11	201.48	201.48			0.73627	0.90218	NaN	1	0	Median	16081000	9685300	6395300	5692	737	5338	11334	27760;27761;27762;27763;27764;27765	27761		6	9606
GTINFLHADCDK	1	0	Unmodified	1389.6347	0.63469914	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	5.5	0.5					2	2											14.511	14.511	2;3	0.0041636	7557	DP690-6	74.392	57.823			0.7421	0.84406	2.2905	2	0	Median	26938000	14949000	11989000	5693	1989	5339	11335;11336;11337;11338	27766;27767;27768;27769;27770	27768		5	9606
GTINFLHADCDKFR	1	1	Unmodified	1692.8042	0.80422409	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	1	7.25	3.34					4	2							2				15.062	15.062	2;3;4	1.5969E-05	8064	DP690-5	133.88	116.89			0.77075	0.8538	6.9393	6	0	Median	1195400000	662370000	533020000	5694	1989	5340	11339;11340;11341;11342;11343;11344;11345;11346	27771;27772;27773;27774;27775;27776;27777;27778;27779;27780;27781;27782;27783;27784;27785;27786;27787	27778		17	9606
GTIQVITQGTSLK	1	0	Unmodified	1344.7613	0.76127986	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	4	0				3													15.955	15.955	2	2.9833E-06	9733	DP690-4	193.83	193.83			1.1227	1.1813	NaN	1	0	Median	101710000	61135000	40576000	5695	167	5341	11347;11348;11349	27788;27789;27790;27791;27792	27789		5	9606
GTLCSMGMVQQLVALVR	0	1	2 Oxidation (M)	1893.9475	0.9474592	2274	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	2	0	6	0						1											19.945	19.945	2	0.049037	13999	DP690-6	75.695	28.852			NaN	NaN	NaN	0	0	Median	1352000	1352000	0	5696	2274	5342	11350	27793;27794	27793		2	9606
GTLEQWIEK	1	0	Unmodified	1102.5659	0.56587452	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	12	0												1					17.751	17.751	2	0.038503	12886	DP690-12	90.601	44.629			NaN	NaN	NaN	0	0	Median	11218000	0	11218000	5697	538	5343	11351	27795	27795		1	9606
GTLGGMFGMLK	1	0	Unmodified	1110.5566	0.55657216	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	12	0												1					20.132	20.132	2	0.036849	16111	DP690-12	66.692	9.9708			0.81635	0.9834	NaN	1	0	Median	16954000	9971700	6981900	5698	417	5344	11352	27796;27797;27798	27796		3	9606
GTLSGAPAPPTR	0	1	Unmodified	1123.5986	0.59857163	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11	0											1						12.152	12.152	2	0.042064	5302	DP690-11	63.073	28.985			0.49742	0.59641	NaN	1	0	Median	58995000	39690000	19304000	5699	2024	5345	11353	27799;27800	27800		2	9606
GTMDDISQEEGSSQGEDSVSGSQR	0	1	Oxidation (M)	2501.0096	0.009597586	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	1	0	10	0										1							12.936	12.936	2	8.142099999999999E-126	6465	DP690-10	388.83	381.95			0.76552	0.95884	NaN	1	0	Median	44187000	26442000	17745000	5700	1285	5346	11354	27801;27802;27803;27804	27801	1970	4	9606
GTMDDISQEEGSSQGEDSVSGSQR	0	1	Unmodified	2485.0147	0.014682964	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							14.37	14.37	2	0.0006651	8605	DP690-10	102.72	84.381			0.95048	1.186	NaN	1	0	Median	26759000	12557000	14201000	5701	1285	5346	11355	27805	27805		1	9606
GTMIPSEAPLLHR	0	1	Oxidation (M)	1436.7446	0.74458394	1815	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	yes	yes	0	1	0	15	0															1		14.589	14.589	3	0.0021053	8240	DP690-15	84.169	67.052			0.60702	0.69154	NaN	1	0	Median	45227000	27814000	17413000	5702	1815	5347	11356	27806;27807	27807	2397	2	9606
GTMTTGHNVADLVVILK	1	0	Unmodified	1767.9553	0.955305	1169	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	14	0														1			18.59	18.59	3	0.00041043	13739	DP690-14	88.19	61.162			0.91529	1.108	NaN	1	0	Median	74520000	38479000	36041000	5703	1169	5348	11357	27808;27809	27808		2	9606
GTNIQENEYVK	1	0	Unmodified	1293.6201	0.62009493	1988	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	13.5	0.5													1	1			12.72	12.72	2	7.6932E-05	5663	DP690-13	160.75	114.35			0.85522	0.98801	NaN	1	0	Median	96547000	35086000	61461000	5704	1988	5349	11358;11359	27810;27811;27812;27813;27814;27815;27816;27817	27814		8	9606
GTNVMVTHYFLPPDDAVPSDDDLGTVPDYNQLK	1	0	Unmodified	3632.6981	0.69809384	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	11	0											1						20.564	20.564	3	2.4173E-05	17384	DP690-11	76.838	61.611			NaN	NaN	NaN	0	0	Median	22896000	22896000	0	5705	837	5350	11360	27818;27819	27818		2	9606
GTPAGTTPGASQAPK	1	0	Unmodified	1339.6732	0.67319314	1604	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	11	0											1						10.421	10.421	2	1.0591E-06	2690	DP690-11	183.85	164.25			0.59253	0.71648	NaN	1	0	Median	59185000	35205000	23980000	5706	1604	5351	11361	27820;27821;27822;27823	27821		4	9606
GTPEETGSYLVSK	1	0	Unmodified	1366.6616	0.6616254	2330	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	3	0			1														14.222	14.222	2	0.029615	7638	DP690-3	66.663	41.788			0.80453	0.85623	NaN	1	0	Median	12147000	6715200	5432200	5707	2330	5352	11362	27824;27825	27825		2	9606
GTPEPGPLNAVDER	0	1	Unmodified	1450.7052	0.70522155	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	5	0.707				1	2	1											14.823	14.823	2	1.8308E-05	7919	DP690-5	127.87	96.582			0.57767	0.62897	12.699	2	0	Median	466860000	226080000	240780000	5708	2385	5353	11363;11364;11365;11366	27826;27827;27828;27829;27830;27831;27832;27833;27834	27831		9	9606
GTPGPDSSGSLGSGEFTGVK	1	0	Unmodified	1835.8537	0.85373628	2310	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	11	0											1						15.73	15.73	2	0.049955	10448	DP690-11	86.497	31.846			NaN	NaN	NaN	0	0	Median	0	0	0	5709	2310	5354	11367	27835	27835		1	9606
GTPGPPPAHGAALQPHPR	0	1	Unmodified	1756.9121	0.91213505	1344	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	0	0	8.5	4.5				2									2				10.379	10.379	3;4	9.3746E-09	2716	DP690-4	144.4	144.4			0.45119	0.49545	25.332	3	0	Median	91708000	62714000	28994000	5710	1344	5355	11368;11369;11370;11371	27836;27837;27838;27839;27840;27841;27842;27843;27844	27840		9	9606
GTPLISPLIK	1	0	Unmodified	1037.6485	0.64848194	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															17.673	17.673	2	0.007158	10835	DP690-2	87.639	68.857			0.75409	0.77012	NaN	1	0	Median	125610000	70837000	54768000	5711	789	5356	11372	27845;27846;27847;27848	27848		4	9606
GTPQKDVIIK	2	0	Acetyl (Protein N-term)	1139.655	0.65502388	876	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	1	0	1	6	0						1											13.227	13.227	2	0.029833	5915	DP690-6	52.725	17.43			1.4598	1.5091	NaN	1	0	Median	5824200	2146900	3677300	5712	876	5357	11373	27849	27849		1	9606
GTPWEGGLFK	1	0	Unmodified	1090.5447	0.54474515	1024	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	0	0	12	4								1								1	18.409	18.409	2	0.0089296	11840	DP690-8	85.161	53.857			0.85201	0.99327	0.16842	2	0	Median	11788000	6129900	5657600	5713	1024	5358	11374;11375	27850;27851;27852;27853;27854	27853		5	9606
GTQEVAPPTPLTPTSHTANTSPR	0	1	Unmodified	2359.1768	0.17680175	783	P48730	CSNK1D	Casein kinase I isoform delta	yes	yes	0	0	0	13	0													2				13.422	13.422	3	4.2738E-05	6583	DP690-13	120.66	120.66			0.45869	0.56115	NaN	1	0	Median	34671000	23720000	10951000	5714	783	5359	11376;11377	27855;27856;27857;27858	27856		4	9606
GTQEVAPPTPLTPTSHTANTSPRPVSGMER	0	2	Oxidation (M)	3131.5306	0.53057501	783	P48730	CSNK1D	Casein kinase I isoform delta	yes	yes	0	1	1	13	0													1				13.076	13.076	4	0.023653	6020	DP690-13	47.919	25.032			0.39661	0.45539	NaN	1	0	Median	62143000	41183000	20960000	5715	783	5360	11378	27859	27859	1163	0	9606
GTQGAEEVLR	0	1	Unmodified	1058.5356	0.53563702	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	11	1.87									1	1	1			1			12.259	12.259	2	5.2353E-05	4750	DP690-9	185.55	128.5			0.80256	0.89879	4.0862	4	0	Median	1108100000	607030000	501060000	5716	1319	5361	11379;11380;11381;11382	27860;27861;27862;27863;27864;27865;27866;27867;27868;27869;27870;27871;27872;27873;27874	27873		15	9606
GTQGATAGASSELDASK	1	0	Unmodified	1549.722	0.72199382	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11.2	3.28				1					2		3	1		1	1	1	11.728	11.728	2	2.1209E-11	4699	DP690-11	201.08	140.92			0.82519	0.94319	3.866	4	0	Median	51459000	26892000	24567000	5717	288	5362	11383;11384;11385;11386;11387;11388;11389;11390;11391;11392	27875;27876;27877;27878;27879;27880;27881;27882;27883;27884;27885;27886;27887;27888;27889;27890;27891;27892;27893;27894	27876		20	9606
GTQGVVTNFEIFR	0	1	Unmodified	1466.7518	0.75177781	902	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	7	4			1								1						19.459	19.459	2	6.6307E-05	15871	DP690-11	184.24	130.17			0.9191	1.1087	NaN	1	0	Median	88892000	43383000	45509000	5718	902	5363	11393;11394	27895;27896;27897;27898;27899;27900	27896		6	9606
GTQTYSVLEGDPSENYSK	1	0	Unmodified	1973.8854	0.88543034	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	7.33	3.09			1						1	1							15.925	15.925	2	4.0045999999999997E-22	10905	DP690-10	214.47	214.47			0.87078	1.0744	NaN	1	0	Median	110270000	64760000	45508000	5719	858	5364	11395;11396;11397	27901;27902;27903;27904;27905;27906;27907;27908;27909	27904		9	9606
GTSETDTICTCEEGWHCTSEACESCVLHR	0	1	Unmodified	3471.353	0.35302262	588	P25942	CD40	Tumor necrosis factor receptor superfamily member 5	yes	yes	0	0	0	14	0														1			15.732	15.732	4	9.934E-07	9947	DP690-14	123.85	123.85			0.75831	0.91139	NaN	1	0	Median	79746000	46065000	33681000	5720	588	5365	11398	27910;27911;27912	27911		3	9606
GTSISTKPPLTK	2	0	Unmodified	1228.7027	0.70270235	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	1	11.3	3.77						1								2			10.963	10.963	2;3	0.00017084	3411	DP690-14	105.17	77.743			0.69774	0.77992	3.4077	3	0	Median	179240000	102610000	76627000	5721	662	5366	11399;11400;11401	27913;27914;27915;27916;27917;27918;27919	27917		7	9606
GTSIVVPEPLHFLLPGKK	2	0	Unmodified	1931.1244	0.12441924	2224	Q9NUQ7	UFSP2	Ufm1-specific protease 2	yes	yes	0	0	1	13	0													1				19.36	19.36	3	0.00054797	14512	DP690-13	83.54	67.417			0.63558	0.71424	NaN	1	0	Median	55727000	35454000	20273000	5722	2224	5367	11402	27920;27921	27920		2	9606
GTSLENLIMEITAPDSQGK	1	0	Oxidation (M)	2018.983	0.98303589	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	1	0	10	0										1							23.984	23.984	2	0.054813	21918	DP690-10	77.633	34.848			NaN	NaN	NaN	0	0	Median	3111000	3111000	0	5723	2411	5368	11403	27922	27922		1	9606
GTSLQSTILGVIPNTPDPASDAQDLPPLHR	0	1	Unmodified	3109.6044	0.60439188	1581	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	11	0											1						21.139	21.139	3	0.023869	18181	DP690-11	37.923	37.923			NaN	NaN	NaN	0	0	Median	42683000	37312000	5370800	5724	1581	5369	11404	27923;27924	27923		2	9606
GTSTYDGFGLAWAISEYIATK	1	0	Unmodified	2250.0845	0.084464496	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	11	0											1						25.878	25.878	2	0.00012923	23890	DP690-11	144.29	123.04			0.77438	0.92658	NaN	1	0	Median	4066300	2009700	2056600	5725	736	5370	11405	27925;27926;27927;27928	27928		4	9606
GTSYQSPHGIPIDLLDR	0	1	Unmodified	1867.9428	0.94282606	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	9	4					1								1				17.92	17.92	3	6.2505E-08	12649	DP690-13	163.02	138.56			1.0515	1.1617	45.518	2	0	Median	190140000	102410000	87729000	5726	2427	5371	11406;11407	27929;27930;27931;27932;27933;27934	27930		6	9606
GTVEGFEPADNK	1	0	Unmodified	1262.5779	0.57789577	687	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	12	4								1								1	13.233	13.233	2	0.00016559	6282	DP690-16	156.16	118.35			0.82393	0.93674	6.6049	2	0	Median	70808000	41418000	29390000	5727	687	5372	11408;11409	27935;27936;27937;27938	27936		4	9606
GTVEPQLEAR	0	1	Unmodified	1098.5669	0.56693715	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.8	3.07		1							2	2	2	3	1	1	1		12.624	12.624	2	5.4679E-24	6090	DP690-10	225.24	145.52			0.80199	0.91139	11.217	6	0	Median	3528799999.9999995	2825200000	703610000	5728	549	5373	11410;11411;11412;11413;11414;11415;11416;11417;11418;11419;11420;11421;11422	27939;27940;27941;27942;27943;27944;27945;27946;27947;27948;27949;27950;27951;27952;27953;27954;27955;27956;27957;27958;27959;27960;27961;27962;27963	27940		23	9606
GTVGEPTYDAEFQHFLR	0	1	Unmodified	1965.9221	0.92209062	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								18.435	18.435	3	7.2411E-07	12956	DP690-9	139.21	114.74			0.92149	1.025	16.268	2	0	Median	38162000	19589000	18573000	5729	1264	5374	11423;11424	27964;27965;27966;27967	27965		4	9606
GTVGSILDR	0	1	Unmodified	916.49779	0.49779495	943	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	12	0												1					14.604	14.604	2	0.022132	8429	DP690-12	77.318	49.144			1.1997	1.4271	NaN	1	0	Median	69946000	33573000	36373000	5730	943	5375	11425	27968;27969	27969		2	9606
GTVPLPTISGHR	0	1	Unmodified	1233.683	0.68296996	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								13.998	13.998	3	0.0018767	7166	DP690-9	84.365	28.644			0.71828	0.89585	NaN	1	0	Median	18537000	11097000	7439600	5731	1048	5376	11426	27970	27970		1	9606
GTVTGQVQGPEDK	1	0	Unmodified	1314.6416	0.64155866	489	P14621	ACYP2	Acylphosphatase-2	yes	yes	0	0	0	8	0								1									10.748	10.748	2	1.8402E-05	3382	DP690-8	181.53	161.39			0.71446	0.82354	NaN	1	0	Median	2931900	1793200	1138700	5732	489	5377	11427	27971;27972;27973;27974	27972		4	9606
GTVTGQVQGPEDKVNSMK	2	0	Oxidation (M)	1889.9153	0.91529068	489	P14621	ACYP2	Acylphosphatase-2	yes	yes	0	1	1	8	0								1									10.868	10.868	3	0.028499	3518	DP690-8	50.534	25.214			0.71613	0.85166	NaN	1	0	Median	2110900	1118600	992210	5733	489	5378	11428	27975;27976	27975	616	2	9606
GTVVTGTLER	0	1	Unmodified	1031.5611	0.56112349	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	13	0													1				12.777	12.777	2	0.00052985	5706	DP690-13	117.81	73.462			0.74433	0.89499	NaN	1	0	Median	86893000	49236000	37657000	5734	793	5379	11429	27977;27978	27977		2	9606
GTYFPTWEGLFWEK	1	0	Unmodified	1759.8246	0.8246084	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							23.315	23.315	2	0.024778	21169	DP690-10	92.112	68.358			NaN	NaN	NaN	0	0	Median	2038600	2038600	0	5735	1492	5380	11430	27979	27979		1	9606
GTYLATFHQR	0	1	Unmodified	1192.5989	0.59890598	902	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	3	0			1														12.916	12.916	2	0.012462	5835	DP690-3	80.219	41.443			1.3214	1.5211	NaN	1	0	Median	17651000	8470300	9181200	5736	902	5381	11431	27980;27981	27981		2	9606
GTYQGLTATVLK	1	0	Unmodified	1250.6871	0.68705229	869	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	15	0															1		16.56	16.56	2	0.0018761	10834	DP690-15	96.171	75.224			0.61447	0.65987	NaN	1	0	Median	301170000	177200000	123970000	5737	869	5382	11432	27982;27983;27984;27985	27984		4	9606
GVAASLLAPLLPEGIKEEEER	1	1	Unmodified	2220.2002	0.20016296	1654	Q8N3X1	FNBP4	Formin-binding protein 4	yes	yes	0	0	1	10	0										1							20.957	20.957	3	0.00092993	18136	DP690-10	75.319	75.319			0.59786	0.73067	NaN	1	0	Median	26058000	15496000	10561000	5738	1654	5383	11433	27986	27986		1	9606
GVAFVGGFSYADVLGSAK	1	0	Unmodified	1743.8832	0.88318591	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	3	0			1														21.315	21.315	2	4.5462E-05	16706	DP690-3	124.47	124.47			0.97877	1.0358	NaN	1	0	Median	9759300	4303400	5455900	5739	134	5384	11434	27987;27988;27989;27990	27988		4	9606
GVAGAHGLLCLLSDHVDKR	1	1	Unmodified	2017.0527	0.052727633	2320	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	1	6	0						1											16.811	16.811	4	0.06763	10288	DP690-6	47.754	23.701			NaN	NaN	NaN	0	0	Median	2571800	0	2571800	5740	2320	5385	11435	27991;27992	27992		2	9606
GVAGALRPLVQATVPATPEQPVLDLK	1	1	Unmodified	2639.501	0.50103642	444	P47985;P0C7P4	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	yes	no	0	0	1	12	4								1								1	19.759	19.759	3	3.4587E-07	14325	DP690-16	136.92	126.02			0.55147	0.61618	1.3065	2	0	Median	83145000	51826000	31319000	5741	444	5386	11436;11437	27993;27994;27995;27996;27997;27998;27999;28000	27995		8	9606
GVAGVPAEFSIWTR	0	1	Unmodified	1488.7725	0.77251325	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	2	0		1															20.619	20.619	2	0.0002679	14154	DP690-2	113.67	86.699			1.0549	1.0904	NaN	1	0	Median	4187900	1795200	2392700	5742	1270	5387	11438	28001;28002;28003;28004;28005;28006	28001		6	9606
GVAPLWMR	0	1	Unmodified	928.49529	0.49529253	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	10	0										1							17.26	17.26	2	0.039279	12882	DP690-10	126.68	87.713			0.81058	0.91202	NaN	1	0	Median	464010000	247700000	216310000	5743	1070	5388	11439	28007	28007		0	9606
GVAVLCTE	0	0	Unmodified	847.41095	0.41095378	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	2	0		1															16.031	16.031	1	0.0011321	8942	DP690-2	132.8	104.38			NaN	NaN	NaN	0	0	Median	0	0	0	5744	1264	5389	11440	28008	28008		1	9606
GVDCLSSHFQELSIYQDQEQR	0	1	Unmodified	2538.1445	0.14451535	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	10	0										1							18.177	18.177	3	0.067344	14138	DP690-10	57.009	39.988			0.88854	1.1059	NaN	1	0	Median	79080000	40038000	39042000	5745	897	5390	11441	28009	28009		0	9606
GVDDLDFFIGDEAIEKPTYATK	2	0	Unmodified	2443.1795	0.17948709	940	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	1	13	0													1				20.749	20.749	3	0.0012234	16420	DP690-13	72.927	59.739			0.78514	0.87891	NaN	1	0	Median	73190000	40489000	32701000	5746	940	5391	11442	28010	28010		1	9606
GVDEATIIDILTK	1	0	Unmodified	1386.7606	0.76061116	365	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	10	4						1								1			22.973	22.973	2	2.8931E-05	17228	DP690-6	169.37	122.19			1.1053	1.2791	26.466	2	0	Median	39101000	18798000	20303000	5747	365	5392	11443;11444	28011;28012;28013;28014;28015	28013		5	9606
GVDEATIIDILTKR	1	1	Unmodified	1542.8617	0.86172219	365	P04083	ANXA1	Annexin A1	yes	yes	0	0	1	6	0						2											21.16	21.16	2;3	0.001205	15352	DP690-6	84.297	61.412			0.92712	1.039	24.968	2	0	Median	5941500	3319300	2622200	5748	365	5393	11445;11446	28016;28017;28018;28019;28020	28020		5	9606
GVDEVTIVNILTNR	0	1	Unmodified	1541.8413	0.8413211	404	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	11.9	3.87	1	1	1	1		4	1	1	1	1	1	1	1	30	2	1	25.573	25.573	2	2.7669E-30	22582	DP690-14	257.09	155.71			0.85333	1.0495	31.569	34	0	Median	7720999999.999999	5970799999.999999	1750099999.9999998	5749	404	5394	11447;11448;11449;11450;11451;11452;11453;11454;11455;11456;11457;11458;11459;11460;11461;11462;11463;11464;11465;11466;11467;11468;11469;11470;11471;11472;11473;11474;11475;11476;11477;11478;11479;11480;11481;11482;11483;11484;11485;11486;11487;11488;11489;11490;11491;11492;11493;11494	28021;28022;28023;28024;28025;28026;28027;28028;28029;28030;28031;28032;28033;28034;28035;28036;28037;28038;28039;28040;28041;28042;28043;28044;28045;28046;28047;28048;28049;28050;28051;28052;28053;28054;28055;28056;28057;28058;28059;28060;28061;28062;28063;28064;28065;28066;28067;28068;28069;28070;28071;28072;28073;28074;28075;28076;28077;28078;28079;28080;28081;28082;28083;28084;28085;28086;28087;28088;28089;28090;28091;28092;28093;28094;28095;28096;28097;28098;28099;28100;28101;28102;28103;28104;28105;28106;28107;28108;28109;28110;28111;28112;28113;28114;28115;28116;28117;28118;28119;28120;28121;28122;28123;28124;28125;28126;28127;28128;28129;28130;28131;28132;28133;28134;28135;28136;28137;28138;28139;28140;28141;28142;28143;28144;28145;28146;28147;28148;28149;28150;28151;28152;28153;28154;28155;28156;28157	28100		136	9606
GVDLQENNPASR	0	1	Unmodified	1298.6215	0.62149192	830	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	0	0	11	4							1								1		12.445	12.445	2	7.0241E-08	5176	DP690-15	205.53	150.16			0.88543	0.98984	33.374	2	0	Median	195910000	112390000	83516000	5750	830	5395	11495;11496	28158;28159;28160;28161;28162;28163;28164;28165;28166	28158		9	9606
GVDLSGNDFK	1	0	Unmodified	1050.4982	0.49818889	1176	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	3	0			1														14.929	14.929	2	0.0067739	8534	DP690-3	88.177	47.453			1.8066	1.9218	NaN	1	0	Median	11963000	4884300	7079000	5751	1176	5396	11497	28167	28167		1	9606
GVDLTEPTQPTR	0	1	Unmodified	1312.6623	0.6622941	542	P20339	RAB5A	Ras-related protein Rab-5A	yes	yes	0	0	0	15	0															1		13.674	13.674	2	1.0123E-07	6909	DP690-15	202.05	157.67			0.80508	0.91982	NaN	1	0	Median	41968000	23752000	18215000	5752	542	5397	11498	28168;28169;28170;28171	28169		4	9606
GVDLVLNSLAEEK	1	0	Unmodified	1385.7402	0.74021007	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														19.276	19.276	2	9.5809E-11	12650	DP690-2	219.5	120.49			0.86236	0.89734	0.12645	2	0	Median	123550000	63927000	59621000	5753	789	5398	11499;11500	28172;28173;28174;28175;28176;28177	28172		6	9606
GVEEEEEDGEMRE	0	1	Oxidation (M)	1552.5835	0.58351101	978	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	1	1	13.3	3.77								1								2	11.253	11.253	2	1.6484E-10	3562	DP690-16	215.72	215.72			0.85118	0.92855	13.543	3	0	Median	140900000	73572000	67327000	5754	978	5399	11501;11502;11503	28178;28179;28180;28181;28182;28183;28184;28185;28186	28182	1494	8	9606
GVEEEEEDGEMRE	0	1	Unmodified	1536.5886	0.58859639	978	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	0	1	12	4								1								1	12.992	12.992	2	3.1661E-08	5912	DP690-16	208.33	145.12			0.84306	0.9852	NaN	1	0	Median	7481600	3680100	3801400	5755	978	5399	11504;11505	28187;28188;28189;28190;28191	28188		5	9606
GVEICIATPGR	0	1	Unmodified	1171.6019	0.60194245	517;1793	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	9.75	3.34				1							1	2					15.879	15.879	2	0.00017575	10313	DP690-12	143.37	105.1			0.8067	0.86668	13.463	2	0	Median	1237800000	611390000	626450000	5756	1793;517	5400	11506;11507;11508;11509	28192;28193;28194;28195;28196;28197;28198	28195		7	9606
GVEITGFPEAQALGLEVFHAGTALK	1	0	Unmodified	2554.3431	0.3431388	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3.67	0.943			2		1												22.827	22.827	3	1.4719E-07	17787	DP690-5	142.45	142.45			0.95646	0.97903	14.822	2	0	Median	60731000	32044000	28688000	5757	559	5401	11510;11511;11512	28199;28200;28201;28202;28203;28204;28205;28206	28204		8	9606
GVEKPPHLAALILAR	1	1	Unmodified	1583.9511	0.95114632	1703	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	yes	yes	0	0	1	13	0													1				16.122	16.122	3	0.0025684	10295	DP690-13	117.93	87.825			NaN	NaN	NaN	0	0	Median	57849000	57849000	0	5758	1703	5402	11513	28207;28208	28207		2	9606
GVFPDNFVK	1	0	Unmodified	1021.5233	0.52328142	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	13	0													1				17.602	17.602	2	0.0066374	12276	DP690-13	93.195	58.303			0.85371	0.97036	NaN	1	0	Median	119180000	68404000	50777000	5759	1823	5403	11514	28209;28210;28211;28212	28211		4	9606
GVFTKPIDSSSQPQQQFPK	2	0	Unmodified	2118.0746	0.074568512	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	1	12	1											1		1				14.639	14.639	3	1.0171E-11	8852	DP690-11	168.16	168.16			0.60596	0.67957	7.4895	2	0	Median	370340000	221550000	148790000	5760	144	5404	11515;11516	28213;28214;28215;28216;28217	28214		5	9606
GVGIISEGNETVEDIAAR	0	1	Unmodified	1828.9167	0.91667089	379	P05023;P13637;P50993	ATP1A1;ATP1A3;ATP1A2	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2	yes	no	0	0	0	7	4			1								1						18.577	18.577	2	2.9078E-33	14608	DP690-11	274.8	274.8			1.2984	1.5174	17.583	2	0	Median	78754000	35123000	43631000	5761	379	5405	11517;11518	28218;28219;28220;28221;28222;28223;28224	28220		7	9606
GVGTGGIVSTAFCLLYK	1	0	Unmodified	1741.9073	0.90729217	1447	Q5VTL8	PRPF38B	Pre-mRNA-splicing factor 38B	yes	yes	0	0	0	12	0												1					22.85	22.85	2	0.019993	19316	DP690-12	62.338	43.714			0.71677	0.86453	NaN	1	0	Median	1932300	1007100	925180	5762	1447	5406	11519	28225	28225		1	9606
GVGVALDDPYENYR	0	1	Unmodified	1566.7314	0.7314363	1608	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	11	0											1						17.266	17.266	2	0.029605	12734	DP690-11	89.548	58.117			NaN	NaN	NaN	0	0	Median	10809000	10809000	0	5763	1608	5407	11520	28226	28226		1	9606
GVIDLDVFLK	1	0	Unmodified	1117.6383	0.63831118	1958	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	5	0					1												22.214	22.214	2	0.040259	17111	DP690-5	67.494	21.068			1.226	1.2296	NaN	1	0	Median	7161400	3099800	4061600	5764	1958	5408	11521	28227	28227		1	9606
GVIDLIFEK	1	0	Unmodified	1032.5855	0.58554733	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	10	0										1							21.357	21.357	2	0.0052887	18561	DP690-10	98.629	68.017			1.2186	1.4909	NaN	1	0	Median	27956000	12888000	15068000	5765	1111	5409	11522	28228;28229;28230;28231;28232	28228		5	9606
GVIDMGNSLIER	0	1	Unmodified	1302.6602	0.66018561	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							18.479	18.479	2	0.0073017	14438	DP690-10	100.82	67.731			1.0523	1.3072	NaN	1	0	Median	88106000	41769000	46337000	5766	1236	5410	11523	28233;28234	28234		2	9606
GVIFGQTSSTFTFADLAK	1	0	Unmodified	1888.9571	0.95707914	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.5	0.5									1	1							21.576	21.576	2	4.1924E-06	16692	DP690-9	131.32	120.32			0.84953	1.068	8.5939	2	0	Median	88263000	46676000	41586000	5767	808	5411	11524;11525	28235;28236;28237;28238;28239;28240;28241	28240		7	9606
GVIINTASVAAFEGQVGQAAYSASK	1	0	Unmodified	2438.2442	0.24415304	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	11	4							1								1		21.386	21.386	2	6.8225E-10	16752	DP690-15	182.15	171.5			0.93104	1.0316	5.0817	2	0	Median	7249300	3540900	3708400	5768	1953	5412	11526;11527	28242;28243;28244;28245;28246;28247;28248;28249;28250;28251;28252	28244		11	9606
GVIPSSLFLQDDEDDDELAGKSPEDLPLR	1	1	Unmodified	3169.5303	0.53028346	286	O76024	WFS1	Wolframin	yes	yes	0	0	1	11	0											1						21.162	21.162	3	0.00035747	18150	DP690-11	89.979	71.957			NaN	NaN	NaN	0	0	Median	0	0	0	5769	286	5413	11528	28253	28253		1	9606
GVIQVYDLGQDGQGMSR	0	1	Oxidation (M)	1837.8629	0.86286118	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	1	0	7.33	3.09			1						1	1							17.13	17.13	2	2.8159E-07	12600	DP690-10	164.22	148.28			0.79374	0.93402	3.7933	2	0	Median	211480000	104320000	107150000	5770	272	5414	11529;11530;11531	28254;28255;28256;28257;28258;28259;28260;28261;28262	28254	288	9	9606
GVIQVYDLGQDGQGMSR	0	1	Unmodified	1821.8679	0.86794655	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10.5	0.5										1	1						17.919	17.919	2	1.2945999999999998E-22	13687	DP690-10	250.69	212.99			0.92605	1.0764	NaN	1	0	Median	304040000	155940000	148100000	5771	272	5414	11532;11533	28263;28264;28265;28266;28267	28263		5	9606
GVISYQTLPR	0	1	Unmodified	1132.6241	0.6240581	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	0	10	0										2							15.634	15.634	2	0.00063119	10412	DP690-10	114.89	90.864			0.67177	0.83291	NaN	1	0	Median	121870000	79573000	42294000	5772	2155	5415	11534;11535	28268;28269;28270	28268		3	9606
GVITRPDLPSKK	2	1	Unmodified	1309.7718	0.77178497	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	2	9	0									1								10.872	10.872	3	0.014965	3265	DP690-9	67.93	28.536			0.69125	0.73961	NaN	1	0	Median	4978400	2773200	2205200	5773	13	5416	11536	28271	28271		1	9606
GVIVDKDFSHPQMPK	2	0	Oxidation (M)	1712.8556	0.85559095	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	1	8	4				1								1					12.249	12.249	3	0.00027994	5132	DP690-12	102.5	76.381			0.99002	1.0798	36.402	2	0	Median	119770000	60957000	58811000	5774	779	5417	11537;11538	28272;28273;28274;28275;28276;28277;28278;28279;28280	28275	1158	9	9606
GVIVDKDFSHPQMPK	2	0	Unmodified	1696.8607	0.86067633	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	4	0				2													14.078	14.078	3	0.0034572	7327	DP690-4	109.95	64.741			NaN	NaN	NaN	0	0	Median	18979000	11043000	7935900	5775	779	5417	11539;11540	28281;28282	28282		2	9606
GVLDVPACQIAIRPEGK	1	1	Unmodified	1821.9771	0.97710307	533	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	1	3	0			1														16.812	16.812	3	0.002162	11080	DP690-3	74.12	74.12			1.0369	1.15	NaN	1	0	Median	12692000	5490200	7202200	5776	533	5418	11541	28283;28284;28285	28283		3	9606
GVLLEIEDLQVNQFK	1	0	Unmodified	1743.9407	0.94070079	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	6	4		1								1							21.891	21.891	2	2.1529E-05	15561	DP690-2	164.65	128.12			0.98576	1.0787	28.47	2	0	Median	21007000	11631000	9375600	5777	766	5419	11542;11543	28286;28287;28288;28289;28290;28291;28292	28288		7	9606
GVLLMLFGGVPK	1	0	Oxidation (M)	1245.7155	0.71551564	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	1	0	7	4			1								1						21.551	21.551	2	0.012282	18716	DP690-11	79.474	79.474			0.75042	0.9148	NaN	1	0	Median	31358000	18579000	12779000	5778	1280	5420	11544;11545	28293;28294;28295;28296;28297	28295	1960	5	9606
GVLQTAAER	0	1	Unmodified	943.50869	0.50869399	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	2	0		1															12.09	12.09	2	0.043086	4297	DP690-2	69.628	34.009			1.0053	1.033	NaN	1	0	Median	3683000	1604600	2078300	5779	1724	5421	11546	28298	28298		1	9606
GVMLAVDAVIAELKK	2	0	Oxidation (M)	1571.8957	0.89566485	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	1	1	8	4				1								1					20.894	20.894	3	0.00055295	16969	DP690-12	88.78	65.184			1.2581	1.377	60.793	2	0	Median	14724000	7908900	6815200	5780	461	5422	11547;11548	28299;28300;28301;28302	28300	533	4	9606
GVNCIDYYSGGDKPYLISGADDR	1	1	Unmodified	2534.1384	0.13836733	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	1	3	0			1														17.284	17.284	3	3.0318E-10	11723	DP690-3	153.36	131.12			1.0546	1.1697	NaN	1	0	Median	37919000	19730000	18190000	5781	670	5423	11549	28303;28304;28305;28306;28307	28307		5	9606
GVNEDTYSGILDCAR	0	1	Unmodified	1668.7413	0.74134906	2140	Q9H936	SLC25A22	Mitochondrial glutamate carrier 1	yes	yes	0	0	0	14	0														1			17.343	17.343	2	1.3661E-06	12118	DP690-14	202.18	179.62			0.94048	1.1317	NaN	1	0	Median	74158000	36162000	37996000	5782	2140	5424	11550	28308;28309;28310;28311	28309		4	9606
GVNIGGAGSYIYEKPLAEGPQVTGPIEVPAAR	1	1	Unmodified	3209.6721	0.67207751	866	P52943	CRIP2	Cysteine-rich protein 2	yes	yes	0	0	1	15	0															1		19.086	19.086	3	1.2617E-07	14035	DP690-15	90.899	81.355			1.132	1.3501	NaN	1	0	Median	6108700	3413300	2695400	5783	866	5425	11551	28312;28313;28314	28312		3	9606
GVNLPGAAVDLPAVSEK	1	0	Unmodified	1635.8832	0.88318591	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	8	4				1								1					18.485	18.485	2	0.00013435	12871	DP690-4	119.56	90.009			0.77776	0.88348	4.397	2	0	Median	60000000	33514000	26485000	5784	488	5426	11552;11553	28315;28316;28317;28318;28319;28320;28321;28322	28320		8	9606
GVNLPGAAVDLPAVSEKDIQDLK	2	0	Unmodified	2348.2587	0.25874047	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	4	0				1													19.766	19.766	3	0.028006	14488	DP690-4	74.742	49.833			NaN	NaN	NaN	0	0	Median	10414000	10414000	0	5785	488	5427	11554	28323	28323		1	9606
GVNSYPSLFIFR	0	1	Unmodified	1398.7296	0.7295858	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	10	4.18			1								1	1		1			21.374	21.374	2	0.00017822	18369	DP690-11	173.37	146.93			1.0881	1.3339	23.438	4	0	Median	168150000	88203000	79944000	5786	1613	5428	11555;11556;11557;11558	28324;28325;28326;28327;28328;28329;28330;28331;28332;28333;28334;28335	28324		12	9606
GVPAGNSDTEGGQPGR	0	1	Unmodified	1497.6808	0.68079771	2377	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	11	0											1						10.43	10.43	2	0.043486	2748	DP690-11	85.973	44.097			NaN	NaN	NaN	0	0	Median	11953000	11953000	0	5787	2377	5429	11559	28336	28336		1	9606
GVPALVALVASSQSVR	0	1	Unmodified	1552.8937	0.89369102	69	O00192	ARVCF	Armadillo repeat protein deleted in velo-cardio-facial syndrome	yes	yes	0	0	0	11	0											1						21.715	21.715	2	4.0109E-06	18876	DP690-11	136.53	136.53			0.62166	0.74239	NaN	1	0	Median	31212000	19088000	12124000	5788	69	5430	11560	28337;28338;28339	28337		3	9606
GVPPPPTVR	0	1	Unmodified	918.5287	0.52870115	1133	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	12	0												1					12.03	12.03	2	0.060465	4873	DP690-12	64.207	47.243			0.51825	0.60987	NaN	1	0	Median	86648000	56957000	29690000	5789	1133	5431	11561	28340	28340		1	9606
GVPQQIEVAR	0	1	Unmodified	1095.6037	0.60365701	1875	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	12	0												1					13.459	13.459	2	0.0007607	6803	DP690-12	111.17	87.645			0.76967	0.87924	NaN	1	0	Median	156300000	90697000	65602000	5790	1875	5432	11562	28341;28342	28342		2	9606
GVPTGFILPIR	0	1	Unmodified	1168.6968	0.69682911	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	9	3.1			1						1		3						20.027	20.027	2	0.00027115	16491	DP690-11	120.87	88.056			0.56951	0.60773	23.348	3	0	Plateau	556530000	379430000	177100000	5791	470	5433	11563;11564;11565;11566;11567	28343;28344;28345;28346;28347;28348;28349;28350;28351;28352;28353	28343		11	9606
GVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAK	3	0	Unmodified	3649.6537	0.65372243	2191	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	yes	yes	0	0	2	3	0			1														13.83	13.83	5	9.2107E-09	7090	DP690-3	105.21	105.21			0.81987	0.85055	NaN	1	0	Median	35831000	17679000	18152000	5792	2191	5434	11568	28354;28355	28354		2	9606
GVQFAPFSTCR	0	1	Unmodified	1268.5972	0.59719142	61	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	12	0												1					17.082	17.082	2	0.011628	11970	DP690-12	104.42	50.93			NaN	NaN	NaN	0	0	Median	27935000	27935000	0	5793	61	5435	11569	28356	28356		1	9606
GVQLQTHPNVDKK	2	0	Unmodified	1462.7892	0.78922595	775	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	1	12	0												2					10.282	10.282	3	0.0014414	2543	DP690-12	84.169	64.062			0.75387	0.85989	NaN	1	0	Median	75189000	32511000	42678000	5794	775	5436	11570;11571	28357;28358	28357		2	9606
GVQYLNEIK	1	0	Unmodified	1062.571	0.5709599	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	3	0			1														15.287	15.287	2	0.0014989	9027	DP690-3	120.46	86.906			1.1139	1.1678	NaN	1	0	Median	50533000	24291000	26242000	5795	483	5437	11572	28359;28360;28361;28362	28362		4	9606
GVQYLNEIKDSVVAGFQWATK	2	0	Unmodified	2352.2114	0.21139634	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	11	0											1						22.975	22.975	3	2.3421E-19	20533	DP690-11	184.88	167.45			0.96468	1.1464	NaN	1	0	Median	37336000	16922000	20414000	5796	483	5438	11573	28363;28364;28365;28366;28367	28366		5	9606
GVSCQFGPDVTK	1	0	Unmodified	1293.6023	0.60233638	870	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	4	0				1													14.01	14.01	2	0.0012728	7197	DP690-4	102.53	56.623			0.93483	1.0148	NaN	1	0	Median	24497000	13414000	11084000	5797	870	5439	11574	28368;28369;28370;28371	28369		4	9606
GVSFYEVPPHLFAVADTVYR	0	1	Unmodified	2266.1423	0.14225415	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						21.185	21.185	3	9.2347E-06	18135	DP690-11	124.77	109.29			0.72389	0.87442	NaN	1	0	Median	97484000	58386000	39098000	5798	65	5440	11575	28372;28373;28374;28375	28372		4	9606
GVSTFMAEMLETASILR	0	1	2 Oxidation (M)	1886.9118	0.9117852	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	2	0	5.67	3.77			2								1						19.592	19.592	2	1.2173E-06	14615	DP690-3	142.91	120.86			1.0635	1.2263	0.21119	2	0	Median	33682000	16434000	17248000	5799	736	5441	11576;11577;11578	28376;28377;28378;28379;28380;28381	28378	1085;1086	6	9606
GVSTFMAEMLETASILR	0	1	Unmodified	1854.922	0.92195596	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	11	0											1						25.904	25.904	2	4.0793E-09	23837	DP690-11	182.23	159			0.9285	1.147	NaN	1	0	Median	10480000	5151800	5328200	5800	736	5441	11579	28382;28383;28384;28385	28383		4	9606
GVSTFMAEMLETASILR	0	1	Oxidation (M)	1870.9169	0.91687058	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	1	0	11	0											3						21.984	21.984	2	0.007508	20407	DP690-11	102.87	77.225			NaN	NaN	NaN	0	0	Median	29867000	12182000	17684000	5801	736	5441	11580;11581;11582	28386;28387;28388	28388	1085;1086	3	9606
GVTCVSQMPVAEGK	1	0	Oxidation (M)	1477.6905	0.69049946	2141	Q9H944	MED20	Mediator of RNA polymerase II transcription subunit 20	yes	yes	0	1	0	15	0															1		11.648	11.648	2	0.00050669	4253	DP690-15	111.63	84.844			0.68131	0.80325	NaN	1	0	Median	10704000	6298600	4405500	5802	2141	5442	11583	28389;28390;28391;28392	28391	2634	4	9606
GVTFLFPIQAK	1	0	Unmodified	1219.6965	0.69649476	2195	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	11	0											1						20.564	20.564	2	0.00012926	17337	DP690-11	136.27	112.75			0.84309	1.0124	NaN	1	0	Median	94946000	48691000	46256000	5803	2195	5443	11584	28393;28394;28395;28396	28395		4	9606
GVTIASGGVLPNIHPELLAK	1	0	Unmodified	1985.131	0.13096118	249	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	14	0														1			18.875	18.875	3	0.00013146	14138	DP690-14	102.59	90.631			0.8109	0.97609	NaN	1	0	Median	107490000	60365000	47128000	5804	249	5444	11585	28397;28398;28399	28397		3	9606
GVTIIGPATVGGIKPGCFK	2	0	Unmodified	1871.0339	0.033889671	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	3	0			1														17.525	17.525	3	1.5101E-05	12027	DP690-3	124.46	67.859			0.72414	0.78348	NaN	1	0	Median	19361000	10675000	8685500	5805	873	5445	11586	28400;28401;28402;28403	28401		4	9606
GVTIPYRPK	1	1	Unmodified	1029.5971	0.59711507	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	1	10	4						1								1			12.565	12.565	2	0.014159	5511	DP690-14	105.14	82.644			0.81722	0.89241	12.937	2	0	Median	459780000	237390000	222390000	5806	1326	5446	11587;11588	28404;28405;28406;28407;28408	28407		5	9606
GVTIPYRPKPSSSPVIFAGGQDR	1	2	Unmodified	2428.2863	0.28629262	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	2	14	0														2			15.417	15.417	3;4	3.6746E-10	9495	DP690-14	153.76	115.66			0.78554	0.89001	0.035889	2	0	Median	396190000	211130000	185060000	5807	1326	5447	11589;11590	28409;28410;28411;28412;28413;28414;28415	28412		7	9606
GVTIVKPIVYGNVAR	1	1	Unmodified	1584.9352	0.9351619	333	O95619	YEATS4	YEATS domain-containing protein 4	yes	yes	0	0	1	15	0															2		15.253	15.253	3	0.00081755	9106	DP690-15	135.04	112.46			NaN	NaN	NaN	0	0	Median	64068000	38138000	25930000	5808	333	5448	11591;11592	28416;28417;28418;28419	28419		4	9606
GVTNDQVDPSVDVLK	1	0	Unmodified	1584.7995	0.79951586	2441	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	14	0														1			16.405	16.405	2	0.0011352	10828	DP690-14	95.401	64.115			0.95238	1.1512	NaN	1	0	Median	30162000	17111000	13051000	5809	2441	5449	11593	28420;28421	28420		2	9606
GVTPAGFPK	1	0	Unmodified	872.4756	0.47560295	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	11	0											1						13.548	13.548	2	0.0023031	7232	DP690-11	111.65	80.345			0.69145	0.74845	NaN	1	0	Median	364770000	206570000	158200000	5810	1758	5450	11594	28422;28423;28424;28425	28423		4	9606
GVTQYYAYVTER	0	1	Unmodified	1448.6936	0.69359423	589	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	8	4				1								1					17.324	17.324	2	0.00032968	12214	DP690-12	179.8	145.62			0.77726	0.92326	NaN	1	0	Median	57862000	32605000	25257000	5811	589	5451	11595;11596	28426;28427	28426		2	9606
GVTYSLESFLGPR	0	1	Unmodified	1424.73	0.72997974	2335	Q9UG56	PISD	Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain	yes	yes	0	0	0	14	0														1			20.78	20.78	2	1.1523E-09	16600	DP690-14	246.93	203.49			0.66487	0.80302	NaN	1	0	Median	58807000	34152000	24655000	5812	2335	5452	11597	28428;28429;28430;28431	28428		4	9606
GVVCIDEFDK	1	0	Unmodified	1180.5434	0.54342452	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	7	4			1								1						16.969	16.969	2	0.0050415	11258	DP690-3	90.601	68.641			0.90007	1.0067	7.599	2	0	Median	163390000	81539000	81850000	5813	581	5453	11598;11599	28432;28433;28434;28435	28435		4	9606
GVVCIDEFDKMSDMDR	1	1	2 Oxidation (M)	1947.8012	0.80124848	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	2	1	7	4			1								1						15.584	15.584	3	0.00027083	10265	DP690-11	94.45	81.303			0.8766	0.98225	2.4222	2	0	Median	201540000	115670000	85871000	5814	581	5454	11600;11601	28436;28437;28438;28439;28440;28441;28442	28436	765;766	7	9606
GVVCIDEFDKMSDMDR	1	1	Oxidation (M)	1931.8063	0.80633385	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	1	1	11	0											1						16.393	16.393	3	0.0055547	11455	DP690-11	68.283	54.537			0.69306	0.78865	NaN	1	0	Median	147270000	86768000	60504000	5815	581	5454	11602	28443;28444;28445	28443	765;766	3	9606
GVVCIDEFDKMSDMDR	1	1	Unmodified	1915.8114	0.81141923	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	11	0											1						18.258	18.258	3	2.9144E-06	14150	DP690-11	128.71	101.98			0.83339	0.94342	NaN	1	0	Median	158640000	88625000	70014000	5816	581	5454	11603	28446;28447;28448;28449	28448		4	9606
GVVDSDDLPLNVSR	0	1	Unmodified	1484.7471	0.74708636	490	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	8.33	3.77			1								2						17.462	17.462	2	6.248E-05	11915	DP690-3	155.33	130.46			1.1607	1.3253	NaN	1	0	Median	24469000	10909000	13561000	5817	490	5455	11604;11605;11606	28450;28451;28452;28453	28452		4	9606
GVVDSEDLPLNISR	0	1	Unmodified	1512.7784	0.77838649	416;409	P07900;P08238	HSP90AA1;HSP90AB1	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta	no	no	0	0	0	6	3.56			1	1							1						18.294	18.294	2	1.4221E-34	14207	DP690-11	234.67	0			0.92624	0.95435	10.066	2	0	Median	714500000	319020000	395470000	5818	409;416	5456	11607;11608;11609	28454;28455;28456;28457;28458;28459;28460;28461;28462;28463;28464	28455		11	9606
GVVEVTHDLQK	1	0	Unmodified	1223.651	0.65100113	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	9	4					5								5				12.63	12.63	2;3	2.2441E-11	5197	DP690-5	209.21	161.34			0.93008	0.96381	34.953	6	0	Median	1237800000	658120000	579640000	5819	819	5457	11610;11611;11612;11613;11614;11615;11616;11617;11618;11619	28465;28466;28467;28468;28469;28470;28471;28472;28473;28474;28475;28476;28477;28478;28479;28480	28479		14	9606
GVVIGTGENSEFGEVFK	1	0	Unmodified	1767.8679	0.86792978	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	11	0											1						19.25	19.25	2	6.3176E-08	15584	DP690-11	173.76	147.05			1.074	1.3027	NaN	1	0	Median	83302000	38382000	44920000	5820	1068	5458	11620	28481;28482;28483;28484	28482		4	9606
GVVLCTFTR	0	1	Unmodified	1051.5485	0.54845032	145	O15235	MRPS12	28S ribosomal protein S12, mitochondrial	yes	yes	0	0	0	16	0																1	15.907	15.907	2	0.00077092	9695	DP690-16	134.81	96.005			0.97108	1.0874	NaN	1	0	Median	62681000	30775000	31906000	5821	145	5459	11621	28485;28486;28487;28488	28487		4	9606
GVVLFPWQAR	0	1	Unmodified	1171.6502	0.65021327	2446	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	10	4						1								1			20.53	20.53	2	0.0029166	16362	DP690-14	96.19	79.227			0.87498	1.0061	13.834	2	0	Median	27797000	15991000	11806000	5822	2446	5460	11622;11623	28489;28490;28491	28490		3	9606
GVVLSGAESLLEHSR	0	1	Unmodified	1552.8209	0.82092001	2046	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	10	0										1							17.859	17.859	3	0.00048176	13703	DP690-10	92.265	70.405			0.83995	1.0471	NaN	1	0	Median	72684000	42359000	30325000	5823	2046	5461	11624	28492	28492		1	9606
GVVMHTFGGYANSK	1	0	Oxidation (M)	1482.6925	0.69254837	1508	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	14	0														1			12.154	12.154	3	0.0010561	5015	DP690-14	89.747	67.426			0.98622	1.2004	NaN	1	0	Median	40102000	19521000	20582000	5824	1508	5462	11625	28493;28494;28495;28496	28496	2192	4	9606
GVVQELQQAISK	1	0	Unmodified	1298.7194	0.71941505	617	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	12.8	3.96						1								1	1	1	19.696	19.696	2	1.778E-05	15167	DP690-14	190.96	121.36			1.0453	1.2244	4.9781	4	0	Median	428840000	211150000	217700000	5825	617	5463	11626;11627;11628;11629	28497;28498;28499;28500;28501;28502;28503;28504;28505;28506	28497		10	9606
GWAPTFLGYSMQGLCK	1	0	Oxidation (M)	1830.8433	0.84331171	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	0	10	0										1							19.899	19.899	2	0.00098985	16590	DP690-10	103.75	88.852			1.1654	1.4333	NaN	1	0	Median	48628000	24479000	24148000	5826	1070	5464	11630	28507;28508	28508	1667	2	9606
GWAPTFLGYSMQGLCK	1	0	Unmodified	1814.8484	0.84839709	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	11.6	2.06									1	1	1			2			21.722	21.722	2	5.1567E-07	17749	DP690-14	158.08	142.14			0.77831	0.93431	16.045	3	0	Median	68537000	29263000	39274000	5827	1070	5464	11631;11632;11633;11634;11635	28509;28510;28511;28512;28513;28514;28515;28516;28517	28513		9	9606
GWAPVFLDR	0	1	Unmodified	1059.5502	0.55016488	2509	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	yes	yes	0	0	0	7	0							1										19.36	19.36	2	0.050968	13822	DP690-7	67.169	36.666			0.83288	0.9628	NaN	1	0	Median	9686400	4793100	4893300	5828	2509	5465	11636	28518	28518		1	9606
GWDDLFNK	1	0	Unmodified	993.4556	0.45559579	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									2								19.467	19.467	2	0.046311	14226	DP690-9	98.418	37.658			NaN	NaN	NaN	0	0	Median	5781400	0	5781400	5829	1264	5466	11637;11638	28519;28520;28521	28520		3	9606
GWLYYEAGQR	0	1	Unmodified	1241.5829	0.58292157	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							17.2	17.2	2	0.00014911	12709	DP690-10	135.77	93.37			0.88658	1.0871	2.1217	2	0	Median	169400000	90418000	78983000	5830	1319	5467	11639;11640	28522;28523;28524;28525;28526;28527	28523		6	9606
GWPLELLCEK	1	0	Unmodified	1243.6271	0.62709457	1170	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	11	0											1						21.212	21.212	2	0.019285	18138	DP690-11	74.464	0			0.80005	0.98159	NaN	1	0	Median	21023000	10707000	10316000	5831	1170	5468	11641	28528;28529	28529		2	9606
GWSMSEQSEESVGGR	0	1	Unmodified	1624.6787	0.6787488	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	11	0											1						14.987	14.987	2	9.0153E-05	9244	DP690-11	123.26	88.563			0.93982	1.1206	NaN	1	0	Median	42657000	21000000	21657000	5832	2340	5469	11642	28530	28530		1	9606
GWSMSEQSEESVGGR	0	1	Oxidation (M)	1640.6737	0.67366342	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	1	0	11	0											2						12.962	12.962	2	1.3093E-25	6346	DP690-11	218.18	170.88			NaN	NaN	NaN	0	0	Median	50554000	29723000	20831000	5833	2340	5469	11643;11644	28531;28532;28533;28534	28531	2777	4	9606
GYAEVVVASENSVHK	1	0	Unmodified	1587.7893	0.78928553	1662	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	12.7	0.471												1	2				14.703	14.703	2	0.00016924	8564	DP690-12	119.21	103.29			0.86062	1.0293	NaN	1	0	Median	33511000	17310000	16200000	5834	1662	5470	11645;11646;11647	28535;28536;28537;28538;28539	28536		5	9606
GYAFIEFASFEDAK	1	0	Unmodified	1593.7351	0.73512469	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11	0											1						21.553	21.553	2	3.672E-05	18711	DP690-11	126.19	126.19			0.85519	1.0339	NaN	1	0	Median	58326000	34176000	24150000	5835	534	5471	11648	28540;28541;28542;28543	28542		4	9606
GYAFIEFASFEDAKEALNSCNKR	2	1	Unmodified	2666.2435	0.24350111	534	P19338	NCL	Nucleolin	yes	yes	0	0	2	11	0											1						19.821	19.821	3	7.9057E-05	16338	DP690-11	120.9	120.9			1.2116	1.4657	NaN	1	0	Median	36376000	15900000	20476000	5836	534	5472	11649	28544;28545;28546	28544		3	9606
GYAFIEYEHER	0	1	Unmodified	1412.6361	0.63607935	422	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	12	0												2					15.065	15.065	2	0.00079362	9079	DP690-12	147.2	115.71			NaN	NaN	NaN	0	0	Median	0	0	0	5837	422	5473	11650;11651	28547;28548	28547		2	9606
GYAFITFCGK	1	0	Unmodified	1162.5481	0.54811597	176	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	11.5	0.5											1	1					18.546	18.546	2	0.012685	13906	DP690-12	79.906	64.756			0.86304	1.0415	14.513	2	0	Median	90547000	47970000	42577000	5838	176	5474	11652;11653	28549;28550;28551	28550		3	9606
GYAFNHSADFETVR	0	1	Unmodified	1612.727	0.72701962	941	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	14	0														2			14.915	14.915	2;3	4.4114E-05	8757	DP690-14	146.5	120.39			0.86516	1.0488	NaN	1	0	Median	120780000	103780000	17006000	5839	941	5475	11654;11655	28552;28553;28554;28555;28556;28557	28555		6	9606
GYAVLGGER	0	1	Unmodified	920.47158	0.4715802	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															13.765	13.765	2	0.010258	6243	DP690-2	89.296	54.403			0.87544	0.90854	NaN	1	0	Median	101360000	57054000	44303000	5840	789	5476	11656	28558;28559	28558		2	9606
GYAYVEFENPDEAEK	1	0	Unmodified	1759.7577	0.75771063	1324	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	yes	yes	0	0	0	9	0									1								17.148	17.148	2	1.2268E-05	11294	DP690-9	142.89	136.18			0.72601	0.92828	NaN	1	0	Median	11807000	6005900	5801600	5841	1324	5477	11657	28560;28561;28562	28560		3	9606
GYDDRDYYSR	0	2	Unmodified	1308.5371	0.53709359	1011	P62995	TRA2B	Transformer-2 protein homolog beta	yes	yes	0	0	1	13	2.35									1					2	1		11.864	11.864	2;3	0.0021477	4547	DP690-14	101.9	83.837			0.94747	1.0712	13.206	4	0	Median	104900000	53436000	51466000	5842	1011	5478	11658;11659;11660;11661	28563;28564;28565;28566;28567;28568	28566		6	9606
GYDFESETDTETIAK	1	0	Unmodified	1704.7366	0.73664084	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	3.5	0.5			1	1													16.34	16.34	2	1.4504E-05	10411	DP690-3	132.03	132.03			0.90195	0.97229	12.841	2	0	Median	27640000	15871000	11769000	5843	1122	5479	11662;11663	28569;28570;28571;28572;28573;28574	28569		6	9606
GYDVIAQAQSGTGK	1	0	Unmodified	1393.6838	0.68375782	927;1266	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	13.5	0.5													1	1			14.443	14.443	2	1.0762E-06	7882	DP690-13	192.44	192.44			1.0338	1.1849	14.634	2	0	Median	494550000	241790000	252760000	5844	927;1266	5480	11664;11665	28575;28576;28577;28578;28579;28580	28577		6	9606
GYDYGPHFQGILEASLEGDSGR	0	1	Unmodified	2367.0768	0.076753356	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														20.04	20.04	3	8.2569E-20	13546	DP690-2	188.27	170.48			0.65415	0.68199	NaN	1	0	Median	32501000	21574000	10927000	5845	789	5481	11666;11667	28581;28582;28583;28584;28585;28586;28587	28583		7	9606
GYEDDDYVSKK	2	0	Unmodified	1317.5725	0.57247604	846	P51946	CCNH	Cyclin-H	yes	yes	0	0	1	14	0														1			11.042	11.042	2	0.002127	3485	DP690-14	106.88	84.301			0.8898	0.99511	NaN	1	0	Median	10948000	5120500	5827400	5846	846	5482	11668	28588;28589;28590;28591	28588		4	9606
GYELLFQPEVVR	0	1	Unmodified	1448.7664	0.76636524	216	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	11.5	0.5											1	1					20.184	20.184	2	0.00025596	16916	DP690-11	144.65	96.559			0.6675	0.80912	18.486	2	0	Median	98409000	54543000	43867000	5847	216	5483	11669;11670	28592;28593;28594;28595	28592		4	9606
GYESFGVHR	0	1	Unmodified	1050.4883	0.4882929	1110	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	4	0				1													12.362	12.362	2	0.0013929	5085	DP690-4	121.62	77.172			0.89281	1.0405	NaN	1	0	Median	12451000	7003300	5447600	5848	1110	5484	11671	28596;28597;28598	28598		3	9606
GYFDEEMNR	0	1	Oxidation (M)	1175.4553	0.45533779	1319	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	yes	no	0	1	0	9	0									1								13.904	13.904	2	0.021058	7009	DP690-9	86.833	73.566			0.83737	1.0073	NaN	1	0	Median	34703000	18625000	16077000	5849	1319	5485	11672	28599	28599	2021	1	9606
GYFEYIEENK	1	0	Unmodified	1290.5768	0.57683314	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	3	0			1														17.657	17.657	2	0.00019914	12178	DP690-3	127.46	109.2			0.95927	1.0307	NaN	1	0	Median	16662000	9040500	7621700	5850	1078	5486	11673	28600	28600		1	9606
GYFEYIEENKYSR	1	1	Unmodified	1696.7733	0.77330111	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	9.57	2.92			1						2		2	2					16.575	16.575	2;3	3.7985E-10	10702	DP690-3	219.03	190.46			0.95643	1.1065	5.6892	4	0	Median	421100000	272040000	149060000	5851	1078	5487	11674;11675;11676;11677;11678;11679;11680	28601;28602;28603;28604;28605;28606;28607;28608;28609;28610;28611;28612;28613;28614;28615;28616;28617;28618;28619;28620;28621	28613		21	9606
GYFFLDER	0	1	Unmodified	1045.4869	0.48689592	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	0	14	0														2			19.275	19.275	2	0.055419	14612	DP690-14	107.32	73.767			NaN	NaN	NaN	0	0	Median	0	0	0	5852	820	5488	11681;11682	28622;28623	28622		2	9606
GYFSEEMNR	0	1	Oxidation (M)	1147.4604	0.46042317	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	7	3.56		1							1	1							13.114	13.114	2	0.0062521	5876	DP690-9	104.75	81.704			0.85899	1.0088	13.229	3	0	Plateau	354340000	185210000	169120000	5853	1319	5489	11683;11684;11685	28624;28625;28626;28627;28628;28629;28630	28628	2022	7	9606
GYFSEEMNR	0	1	Unmodified	1131.4655	0.46550855	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							14.866	14.866	2	8.8954E-05	9327	DP690-10	173.59	167.81			0.82735	0.98452	2.0964	2	0	Median	257610000	147990000	109630000	5854	1319	5489	11686;11687	28631;28632;28633;28634;28635;28636	28631		6	9606
GYGFIEYEK	1	0	Unmodified	1104.5128	0.51277632	2348	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	12	0												1					16.441	16.441	2	0.0024426	11042	DP690-12	110.12	85.488			1.0039	1.154	NaN	1	0	Median	126080000	62855000	63225000	5855	2348	5490	11688	28637;28638	28637		2	9606
GYGFVHFETQEAAER	0	1	Unmodified	1739.7903	0.79034816	471	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	8	4				2								2					15.757	15.757	2;3	0.0077944	9584	DP690-4	65.528	49.263			1.099	1.2722	46.28	3	0	Plateau	146110000	65750000	80357000	5856	471	5491	11689;11690;11691;11692	28639;28640;28641;28642;28643	28642		5	9606
GYGLCHGSAGNAYAFLTLYNLTQDMK	1	0	Oxidation (M)	2880.3211	0.3210995	191	O43813	LANCL1	LanC-like protein 1	yes	yes	0	1	0	6	0						1											20.985	20.985	3	0.00031647	15206	DP690-6	73.649	73.649			0.81738	0.90755	NaN	1	0	Median	2929100	1537300	1391800	5857	191	5492	11693	28644;28645;28646;28647	28645	202	4	9606
GYGPATQVR	0	1	Unmodified	947.48248	0.48247924	837	P51610;Q9Y5Z7	HCFC1;HCFC2	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6;Host cell factor 2	yes	no	0	0	0	11	0											1						11.266	11.266	2	0.042455	4014	DP690-11	69.825	27.428			0.7581	0.8967	NaN	1	0	Median	133750000	76554000	57196000	5858	837	5493	11694	28648;28649;28650	28649		3	9606
GYGYGQGAGTLNMDR	0	1	Oxidation (M)	1574.6784	0.67835487	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	1	0	13.2	3.63							1								2	1	13.959	13.959	2	0.00011864	8874	DP690-15	124.21	104.08			0.83676	0.85587	16.136	4	0	Median	3869799999.9999995	2114899999.9999998	1754899999.9999998	5859	1354	5494	11695;11696;11697;11698	28651;28652;28653;28654;28655;28656;28657;28658;28659;28660;28661;28662;28663;28664;28665;28666;28667;28668;28669	28658	2101	19	9606
GYGYGQGAGTLNMDR	0	1	Unmodified	1558.6834	0.68344025	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	0	13.3	3.09									1						1	1	15.117	15.117	2	1.4019E-09	8834	DP690-15	199.03	180.97			1.0042	1.1028	28.365	2	0	Median	550810000	287890000	262920000	5860	1354	5494	11699;11700;11701	28670;28671;28672;28673;28674;28675;28676;28677;28678;28679	28670		10	9606
GYGYGQGAGTLNMDRGER	0	2	Oxidation (M)	1916.8435	0.84352272	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	1	1	15	0															2		12.469	12.469	2;3	0.00080255	5262	DP690-15	81.619	60.161			0.87561	0.94986	2.5045	2	0	Median	1410600000	608930000	801680000	5861	1354	5495	11702;11703	28680;28681;28682;28683;28684;28685;28686;28687	28680	2101	8	9606
GYGYGQGAGTLNMDRGER	0	2	Unmodified	1900.8486	0.8486081	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	1	15	0															2		13.764	13.764	2;3	6.2029E-09	7117	DP690-15	149.23	121.26			0.88461	0.95962	0.023715	2	0	Median	164880000	89588000	75296000	5862	1354	5495	11704;11705	28688;28689;28690;28691;28692;28693;28694;28695	28691		8	9606
GYGYGQGAGTLSTDKGESLGIK	2	0	Unmodified	2158.0542	0.054227	548	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	1	15	0															3		15.188	15.188	2;3	5.8655E-10	9027	DP690-15	150.59	111.58			0.87585	1.0034	NaN	1	0	Median	104670000	51566000	53101000	5863	548	5496	11706;11707;11708	28696;28697;28698;28699;28700;28701;28702	28701		7	9606
GYIFLEYASPAHAVDAVK	1	0	Unmodified	1949.9887	0.98871362	902	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	3	0			1														19.013	19.013	3	0.0014945	13888	DP690-3	121.32	86.221			NaN	NaN	NaN	0	0	Median	0	0	0	5864	902	5497	11709	28703	28703		1	9606
GYISPYFINTSK	1	0	Unmodified	1388.6976	0.69761697	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	8	4				1								1					17.845	17.845	2	4.7378E-05	12117	DP690-4	150.81	126.58			0.90972	0.99646	34.232	2	0	Median	235860000	136600000	99263000	5865	461	5498	11710;11711	28704;28705;28706;28707;28708;28709	28709		6	9606
GYLDDPTVPR	0	1	Unmodified	1131.556	0.55603812	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	4	0				1													15.447	15.447	2	8.4023E-05	9049	DP690-4	162.25	131.93			0.76995	0.76719	NaN	1	0	Median	357270000	199470000	157800000	5866	469	5499	11712	28710;28711;28712;28713;28714	28711		5	9606
GYLDKLEPSK	2	0	Unmodified	1148.6077	0.60773933	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	13	0													1				14.369	14.369	2	0.0004738	7769	DP690-13	140.11	101.84			0.70662	0.78027	NaN	1	0	Median	192100000	106930000	85177000	5867	585	5500	11713	28715;28716;28717;28718	28717		4	9606
GYLGPPHQGPPMHHASGHDTR	0	1	Oxidation (M)	2264.0294	0.029366429	2089	Q9H0L4	CSTF2T	Cleavage stimulation factor subunit 2 tau variant	yes	yes	0	1	0	12	0												1					10.184	10.184	5	0.0015738	2371	DP690-12	67.168	54.629			0.55804	0.66198	NaN	1	0	Median	73897000	45117000	28780000	5868	2089	5501	11714	28719;28720;28721;28722	28719	2602	4	9606
GYLGPPHQGPPMHHASGHDTR	0	1	Unmodified	2248.0345	0.034451807	2089	Q9H0L4	CSTF2T	Cleavage stimulation factor subunit 2 tau variant	yes	yes	0	0	0	12	0												1					10.287	10.287	5	0.0012756	2583	DP690-12	69.256	61.239			0.54205	0.64369	NaN	1	0	Median	37818000	24063000	13755000	5869	2089	5501	11715	28723	28723		1	9606
GYLNKDTHDQLSEPSEVR	1	1	Unmodified	2086.992	0.99196109	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0.816									1	1	1						12.922	12.922	3	1.1817E-11	5681	DP690-9	199.61	187.3			0.79071	0.93442	8.8761	3	0	Median	296050000	159820000	136230000	5870	1319	5502	11716;11717;11718	28724;28725;28726;28727;28728;28729;28730;28731;28732	28728		9	9606
GYLPSHYER	0	1	Unmodified	1120.5302	0.53015772	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							12.136	12.136	2	0.043741	5352	DP690-10	69.423	48.553			0.82203	1.0258	NaN	1	0	Median	68891000	32925000	35966000	5871	1492	5503	11719	28733	28733		1	9606
GYNATVLAYGQTGSGK	1	0	Unmodified	1585.7736	0.77363546	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	0	10	0										3							15.339	15.339	2	1.6405E-12	9990	DP690-10	207.95	177.06			0.72062	0.87224	NaN	1	0	Median	195370000	137860000	57510000	5872	311	5504	11720;11721;11722	28734;28735;28736;28737	28734		4	9606
GYNDDYYEESYFTTR	0	1	Unmodified	1921.7643	0.76425257	817	P50402	EMD	Emerin	yes	yes	0	0	0	14	0														1			18.059	18.059	2	1.6241E-20	13067	DP690-14	297.2	280.54			0.84183	0.99856	NaN	1	0	Median	120680000	63250000	57433000	5873	817	5505	11723	28738;28739;28740;28741	28741		4	9606
GYNHGQGSYSYSNSYNSPGGGGGSDYNYESK	1	0	Unmodified	3252.2929	0.29290673	1170	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	11	0											1						13.806	13.806	3	1.1109E-09	7648	DP690-11	122.21	105.42			NaN	NaN	NaN	0	0	Median	12996000	0	12996000	5874	1170	5506	11724	28742	28742		1	9606
GYPHLCSICDLPVHSNK	1	0	Unmodified	1995.9295	0.92950095	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											1						15.079	15.079	3	7.3448E-08	9538	DP690-11	158.65	140.42			0.71806	0.82319	NaN	1	0	Median	173220000	107190000	66031000	5875	735	5507	11725	28743;28744;28745	28744		3	9606
GYPTLLLFR	0	1	Unmodified	1078.6175	0.61751616	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	5	0					1												20.848	20.848	2	0.0019552	15354	DP690-5	115.46	81.286			1.4585	1.5142	NaN	1	0	Median	82284000	33038000	49247000	5876	1675	5508	11726	28746;28747;28748;28749	28746		4	9606
GYPTLLWFR	0	1	Unmodified	1151.6128	0.61276513	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	5	0					1												21.53	21.53	2	0.0062733	16135	DP690-5	94.662	63.133			1.5615	1.6277	NaN	1	0	Median	53571000	21444000	32127000	5877	1675	5509	11727	28750;28751;28752	28750		3	9606
GYQGYPGGDYSGGPQDGGAGK	1	0	Unmodified	1986.8344	0.83439782	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	10	0										1							13.898	13.898	2	1.4061999999999998E-19	7874	DP690-10	193.45	188.31			0.73821	0.90735	NaN	1	0	Median	39321000	25064000	14257000	5878	103	5510	11728	28753;28754;28755;28756	28754		4	9606
GYQQQDAHEFMR	0	1	Oxidation (M)	1524.6416	0.64157543	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	1	0	12	0												1					11.096	11.096	2	0.00034271	3602	DP690-12	121.61	113.96			1.0757	1.3097	NaN	1	0	Median	10719000	4465300	6253900	5879	2521	5511	11729	28757;28758;28759;28760	28757	2957	4	9606
GYQQQDAHEFMR	0	1	Unmodified	1508.6467	0.64666081	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	0	12	0												1					12.839	12.839	3	0.00069725	5958	DP690-12	94.402	75.57			0.89725	1.0428	NaN	1	0	Median	110920000	60512000	50406000	5880	2521	5511	11730	28761;28762	28761		2	9606
GYQQQDSQELLR	0	1	Unmodified	1463.7005	0.70047052	2506	Q9Y5T5	USP16	Ubiquitin carboxyl-terminal hydrolase 16	yes	yes	0	0	0	11	0											1						14.1	14.1	2	0.0022666	8063	DP690-11	132.88	77.893			NaN	NaN	NaN	0	0	Median	12443000	12443000	0	5881	2506	5512	11731	28763;28764	28763		2	9606
GYSFTTTAER	0	1	Unmodified	1131.5197	0.51965261	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	11.8	3.86	1	1	1			2	1		1	1	2	1	1	21	1		18.099	18.099	2	2.5336E-05	7652	DP690-11	180.45	145.01			0.89482	0.55152	22.376	24	0	Linear	61255000000	32421000000	28834000000	5882	926;1023	5513	11732;11733;11734;11735;11736;11737;11738;11739;11740;11741;11742;11743;11744;11745;11746;11747;11748;11749;11750;11751;11752;11753;11754;11755;11756;11757;11758;11759;11760;11761;11762;11763;11764;11765	28765;28766;28767;28768;28769;28770;28771;28772;28773;28774;28775;28776;28777;28778;28779;28780;28781;28782;28783;28784;28785;28786;28787;28788;28789;28790;28791;28792;28793;28794;28795;28796;28797;28798;28799;28800;28801;28802;28803;28804;28805;28806;28807;28808;28809;28810;28811;28812;28813;28814;28815;28816;28817;28818;28819;28820;28821;28822;28823;28824;28825;28826;28827;28828;28829;28830;28831;28832;28833;28834;28835;28836;28837;28838;28839;28840;28841;28842;28843;28844;28845;28846;28847;28848;28849;28850;28851	28774		87	9606
GYTIPLDKR	1	1	Unmodified	1061.5869	0.58694431	1226	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	1	12	0												1					13.146	13.146	2	0.0017149	6384	DP690-12	133.55	87.42			0.73194	0.89887	NaN	1	0	Median	55515000	31393000	24122000	5883	1226	5514	11766	28852;28853;28854;28855	28853		4	9606
GYTLLSEGIDEMVGIIYKPK	2	0	Unmodified	2225.1654	0.16535735	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	10	0										1							24.128	24.128	3	1.419E-06	22102	DP690-10	128.26	128.26			0.54336	0.63372	NaN	1	0	Median	8162500	4909900	3252600	5884	269	5515	11767	28856;28857	28856		2	9606
GYVGSIQPHGVFFR	0	1	Unmodified	1562.7994	0.7993967	1286	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	10	0										1							16.725	16.725	3	0.0015488	12056	DP690-10	83.314	55.905			1.0438	1.3023	NaN	1	0	Median	69643000	33662000	35981000	5885	1286	5516	11768	28858;28859;28860;28861	28858		4	9606
GYVQDPFAALLVPGAAR	0	1	Unmodified	1743.9308	0.93080481	201	O60294	LCMT2	tRNA wybutosine-synthesizing protein 4	yes	yes	0	0	0	8	4				1								1					22.461	22.461	2	0.0012305	17308	DP690-4	127.56	92.809			NaN	NaN	NaN	0	0	Median	2038800	1270600	768170	5886	201	5517	11769;11770	28862;28863;28864;28865	28865		4	9606
GYVSDIDCR	0	1	Unmodified	1083.4655	0.46550855	776	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	4	0				1													13.442	13.442	2	0.014945	6523	DP690-4	84.568	43.539			0.91123	1.0626	NaN	1	0	Median	14279000	8135100	6144000	5887	776	5518	11771	28866	28866		1	9606
GYYSPYSVSGSGSTAGSR	0	1	Unmodified	1781.7857	0.78565671	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	11.2	2.28									1	1	1				1		14.488	14.488	2	5.8618E-31	8636	DP690-11	252.37	237.03			0.84024	0.99867	1.7216	3	0	Median	295550000	167820000	127730000	5888	1319	5519	11772;11773;11774;11775	28867;28868;28869;28870;28871;28872;28873;28874;28875;28876;28877;28878	28872		12	9606
HAASTVQILGAEK	1	0	Unmodified	1323.7147	0.71466402	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	12	0												1					12.49	12.49	2	2.1642E-05	5356	DP690-12	178.95	133.93			1.0216	1.2165	NaN	1	0	Median	73269000	35078000	38191000	5889	2450	5520	11776	28879;28880;28881;28882;28883	28880		5	9606
HADHSSLTLGSGSSTTR	0	1	Unmodified	1712.8078	0.80778914	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1.5	0.5	1	1															10.469	10.469	3	0.00021867	2515	DP690-2	112.34	75.394			1.1981	1.2135	4.1246	2	0	Median	27928000	12127000	15801000	5890	1555	5521	11777;11778	28884;28885	28885		1	9606
HADYIASYGSK	1	0	Unmodified	1210.5619	0.56185177	876	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	0	6	0						3											11.6	11.6	2	1.5854E-05	4081	DP690-6	191.4	158.4			1.4129	1.6026	NaN	1	0	Median	19487000	5310800	14176000	5891	876	5522	11779;11780;11781	28886;28887;28888;28889	28886		4	9606
HALIIYDDLSK	1	0	Unmodified	1286.6871	0.68705229	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	12.5	0.5												1	1				15.92	15.92	2	2.6699E-06	10067	DP690-13	206.43	179.38			0.79311	0.89575	0.062379	2	0	Median	437970000	250840000	187140000	5892	585	5523	11782;11783	28890;28891;28892;28893;28894;28895	28895		6	9606
HALIVQGFSFLNR	0	1	Unmodified	1500.8201	0.82013215	2504	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	11	0											1						18.872	18.872	3	0.044673	14887	DP690-11	68.515	29.935			NaN	NaN	NaN	0	0	Median	20047000	20047000	0	5893	2504	5524	11784	28896	28896		1	9606
HAPHCLSEEEGEQDRPR	0	2	Unmodified	2045.8973	0.8973492	243	O75190	DNAJB6	DnaJ homolog subfamily B member 6	yes	yes	0	0	1	14	0														1			10.238	10.238	4	0.00074865	2464	DP690-14	82.515	75.565			0.62859	0.7387	NaN	1	0	Median	16322000	9961100	6361300	5894	243	5525	11785	28897;28898	28898		2	9606
HAPINSAQHLDNVDQTGPK	1	0	Unmodified	2040.9977	0.99771517	163	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	12	0												1					11.029	11.029	3	0.00011453	3581	DP690-12	105.77	105.77			0.80687	0.97948	NaN	1	0	Median	9219700	4167400	5052300	5895	163	5526	11786	28899;28900;28901;28902	28902		4	9606
HAQANGFSVVR	0	1	Unmodified	1184.6051	0.60505399	874	P53582	METAP1	Methionine aminopeptidase 1	yes	yes	0	0	0	13	0													1				11.171	11.171	2	0.00017353	3636	DP690-13	143.03	118.11			0.83931	1.0254	NaN	1	0	Median	11904000	6448300	5455800	5896	874	5527	11787	28903;28904;28905;28906	28904		4	9606
HAQDTAEGDDVTYMLEK	1	0	Oxidation (M)	1937.8313	0.83128628	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	1	0	11	0											1						13.609	13.609	3	0.0060207	7351	DP690-11	66.779	54.288			0.8635	1.0533	NaN	1	0	Median	28816000	15330000	13485000	5897	2302	5528	11788	28907	28907	2753	1	9606
HAQDTAEGDDVTYMLEK	1	0	Unmodified	1921.8364	0.83637165	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	11	0											1						15.819	15.819	2	0.026125	10581	DP690-11	101.2	68.632			NaN	NaN	NaN	0	0	Median	0	0	0	5898	2302	5528	11789	28908	28908		1	9606
HASGGSTVHIHPQAAPVVCR	0	1	Unmodified	2080.0385	0.038474552	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															10.598	10.598	4	0.056211	2721	DP690-2	34.586	23.478			0.91694	0.95649	NaN	1	0	Median	19759000	10239000	9520300	5899	1555	5529	11790	28909	28909		1	9606
HATIYPTEEELQAVQK	1	0	Unmodified	1855.9316	0.93159267	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	11	0											1						15.447	15.447	2	0.01028	10040	DP690-11	140.24	95.701			NaN	NaN	NaN	0	0	Median	0	0	0	5900	1889	5530	11791	28910	28910		1	9606
HAVGNNEFGTVDHER	0	1	Unmodified	1680.7604	0.76044502	2291	Q9P0J1	PDP1	[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial	yes	yes	0	0	0	13	0													1				10.621	10.621	3	3.0234E-17	2947	DP690-13	263.15	248.72			0.64999	0.77249	NaN	1	0	Median	108510000	67705000	40808000	5901	2291	5531	11792	28911;28912;28913;28914	28911		4	9606
HAVSEGTKAVTKYTSAK	3	0	Unmodified	1776.937	0.9370124	224;399	P57053;O60814;P06899	H2BFS;HIST1H2BK;HIST1H2BJ	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-J	no	no	0	0	2	16	0																1	10.438	10.438	4	0.0031488	2915	DP690-16	89.232	72.245			1.0946	1.3464	NaN	1	0	Median	26132000	12578000	13554000	5902	224;399	5532	11793	28915	28915		1	9606
HCDEVGFNAEEAHNIVK	1	0	Unmodified	1967.8796	0.87957387	842	P51808	DYNLT3	Dynein light chain Tctex-type 3	yes	yes	0	0	0	16	0																1	13.855	13.855	3	1.9156E-06	7121	DP690-16	129.05	129.05			0.75895	0.8875	NaN	1	0	Median	21654000	10996000	10658000	5903	842	5533	11794	28916;28917;28918	28916		3	9606
HCECSTDEVNSEDMDAYCR	0	1	Oxidation (M)	2392.8301	0.83005878	387	P05556	ITGB1	Integrin beta-1	yes	yes	0	1	0	3	0			1														11.893	11.893	3	0.00087702	4545	DP690-3	80.585	71.654			1.4548	1.6229	NaN	1	0	Median	6492300	2944300	3548000	5904	387	5534	11795	28919;28920	28920	409	2	9606
HCFTSPDYQQQCHEMAER	0	1	Unmodified	2322.9205	0.92046919	1475	Q6IQ49	SDE2	Protein SDE2 homolog	yes	yes	0	0	0	13	0													1				12.492	12.492	3	0.063436	5343	DP690-13	37.851	33.18			1.0166	1.2509	NaN	1	0	Median	16807000	6986500	9820300	5905	1475	5535	11796	28921	28921		1	9606
HCIMQANAEYHQSILAK	1	0	Oxidation (M)	2028.951	0.95096468	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	1	0	3	0			1														12.061	12.061	3	7.7114E-08	4697	DP690-3	162.81	127.39			0.88139	0.94288	NaN	1	0	Median	23189000	12114000	11074000	5906	1739	5536	11797	28922;28923;28924;28925	28924	2316	4	9606
HCLLTCEECK	1	0	Unmodified	1348.5574	0.5573768	1410	Q56VL3	OCIAD2	OCIA domain-containing protein 2	yes	yes	0	0	0	12	4								2								2	10.989	10.989	2;3	4.5103E-09	3488	DP690-16	302.96	198.53			0.89424	0.94515	12.491	4	0	Median	993030000	519440000	473590000	5907	1410	5537	11798;11799;11800;11801	28926;28927;28928;28929;28930;28931;28932;28933;28934;28935;28936	28929		11	9606
HDADGQATLLNLLLR	0	1	Unmodified	1648.8897	0.88966827	168	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	4	0				1													21.727	21.727	3	0.0007231	16665	DP690-4	89.26	64.33			1.4443	1.6678	NaN	1	0	Median	2797600	1416200	1381400	5908	168	5538	11802	28937	28937		1	9606
HDDYLVMLK	1	0	Oxidation (M)	1148.5536	0.55359527	2426	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	1	0	15	0															1		14.554	14.554	2	0.0019517	8124	DP690-15	123.98	60.564			0.8654	0.94384	NaN	1	0	Median	206250000	107090000	99158000	5909	2426	5539	11803	28938;28939;28940;28941	28938	2861	4	9606
HDGTGGQSIYGDKFEDENFDVK	2	0	Unmodified	2457.0721	0.072061909	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	1	9.33	0.471									2	1							15.498	15.498	3;4	1.7831E-05	10233	DP690-10	125.04	94.392			0.75068	0.93776	19.303	3	0	Plateau	97822000	51053000	46769000	5910	808	5540	11804;11805;11806	28942;28943;28944;28945;28946;28947;28948	28942		7	9606
HDGYGSHGPLLPLPSR	0	1	Unmodified	1701.8587	0.8587025	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	10.5	1.5									1			1					14.452	14.452	3	0.00017626	8283	DP690-12	109.14	91.859			0.57485	0.64176	NaN	1	0	Median	251880000	160880000	91005000	5911	1750	5541	11807;11808	28949;28950;28951	28949		3	9606
HDHAVSLLTAASPTIALLLER	0	1	Unmodified	2227.2325	0.23246614	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										2							21.758	21.758	3;4	2.0530999999999998E-19	19086	DP690-10	184.66	172.87			0.69526	0.86554	4.6919	2	0	Median	118370000	67526000	50840000	5912	1254	5542	11809;11810	28952;28953;28954;28955;28956;28957;28958;28959	28953		8	9606
HDITLQLAEAER	0	1	Unmodified	1394.7154	0.7153923	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	11	0											3						15.221	15.221	2	0.001455	9664	DP690-11	127.42	91.09			NaN	NaN	NaN	0	0	Median	0	0	0	5913	1573	5543	11811;11812;11813	28960;28961;28962	28960		3	9606
HDVGAYMLMYK	1	0	2 Oxidation (M)	1358.5999	0.59989354	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	9	0									2								13.407	13.407	2;3	0.0064056	6407	DP690-9	72.2	53.234			0.906	1.083	2.7685	2	0	Median	89248000	51165000	38083000	5914	1046	5544	11814;11815	28963;28964;28965	28964	1606;1607	2	9606
HDVGAYMLMYK	1	0	Oxidation (M)	1342.605	0.60497892	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									1								14.586	14.586	2	0.00022772	7905	DP690-9	125.16	88.779			0.90253	1.1249	NaN	1	0	Median	22770000	11839000	10930000	5915	1046	5544	11816	28966;28967;28968;28969	28966	1606;1607	4	9606
HDVGAYMLMYK	1	0	Unmodified	1326.6101	0.6100643	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								16.47	16.47	2	0.00010359	10375	DP690-9	142.92	106.59			0.88744	1.1257	NaN	1	0	Median	17595000	9242900	8351800	5916	1046	5544	11817	28970;28971	28970		2	9606
HDVVFLITK	1	0	Unmodified	1070.6124	0.61243078	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	2	0		1															15.751	15.751	2	0.071147	8657	DP690-2	113.71	88.132			1.386	1.3947	NaN	1	0	Median	9156600	3570800	5585800	5917	1075	5545	11818	28972	28972		0	9606
HEAGEALGAIGDPEVLEILK	1	0	Unmodified	2060.079	0.078985188	2009	Q9BU89	DOHH	Deoxyhypusine hydroxylase	yes	yes	0	0	0	6	0						1											20.702	20.702	3	0.0033705	14853	DP690-6	64.5	48.908			0.40218	0.43673	NaN	1	0	Median	1523300	969980	553350	5918	2009	5546	11819	28973	28973		1	9606
HEAMITDLEER	0	1	Oxidation (M)	1358.6136	0.61362935	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															13.02	13.02	2	0.00029238	5439	DP690-2	170.99	143.51			1.252	1.3094	NaN	1	0	Median	8584000	3401300	5182700	5919	668	5547	11820	28974;28975;28976;28977	28977	949	4	9606
HEAMITDLEER	0	1	Unmodified	1342.6187	0.61871473	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1															14.273	14.273	2	0.0039707	6870	DP690-2	125.75	86.784			NaN	NaN	NaN	0	0	Median	2623100	0	2623100	5920	668	5547	11821	28978	28978		1	9606
HECMAPLTALVK	1	0	Oxidation (M)	1384.6843	0.68429187	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									1								14.126	14.126	2	8.8399E-05	7289	DP690-9	128.81	91.094			0.66101	0.8464	NaN	1	0	Median	15332000	7664400	7667900	5921	1046	5548	11822	28979;28980	28980	1592	2	9606
HEEEAFTAFTPAPEDSLASVPYPPLLR	0	1	Unmodified	2983.4604	0.4603534	1056	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	0	15	0															1		21.932	21.932	3	3.4369E-05	17285	DP690-15	103.03	85.532			0.45641	0.53044	NaN	1	0	Median	4718400	3173300	1545000	5922	1056	5549	11823	28981;28982;28983;28984;28985	28984		5	9606
HEELMLGDPCLK	1	0	Oxidation (M)	1456.669	0.66903574	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	1	0	2	0		1															14.666	14.666	2	0.00010226	7364	DP690-2	126.39	103.07			0.89675	0.89863	NaN	1	0	Median	4523000	2227300	2295700	5923	408	5550	11824	28986;28987;28988;28989	28988	448	4	9606
HEEQPAPGYDTHGR	0	1	Unmodified	1592.6968	0.69678213	1132	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	10	0										1							10.31	10.31	3	0.00052707	2619	DP690-10	93.243	74.411			0.68359	0.83482	NaN	1	0	Median	159810000	87117000	72694000	5924	1132	5551	11825	28990	28990		1	9606
HEFQASLSLK	1	0	Unmodified	1158.6033	0.60332266	1704	Q8NHP7	EXD1	Exonuclease 3'-5' domain-containing protein 1	yes	yes	0	0	0	7	0							1										12.477	12.477	3	0.00084897	5146	DP690-7	81.972	0			0.80694	0.87457	NaN	1	0	Median	26132000	15593000	10539000	5925	1704	5552	11826	28991;28992	28991		2	9606
HEGLGAFYK	1	0	Unmodified	1020.5029	0.50288033	1479	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	13	0													1				13.348	13.348	2	0.00035087	6370	DP690-13	157.58	68.283			1.5659	1.7693	NaN	1	0	Median	139160000	56018000	83140000	5926	1479	5553	11827	28993;28994	28993		2	9606
HEGPSAFLK	1	0	Unmodified	984.50288	0.50288033	2140	Q9H936	SLC25A22	Mitochondrial glutamate carrier 1	yes	yes	0	0	0	14	0														2			11.933	11.933	2	0.012997	4671	DP690-14	107.29	50.117			1.2886	1.5609	NaN	1	0	Median	101050000	63708000	37338000	5927	2140	5554	11828;11829	28995;28996;28997	28997		3	9606
HEILLSQSVR	0	1	Unmodified	1180.6564	0.65642086	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						12.806	12.806	2	6.79E-05	6113	DP690-11	166.3	143.72			0.89577	1.0673	NaN	1	0	Median	121800000	62900000	58900000	5928	891	5555	11830	28998;28999	28999		2	9606
HEKEDGAISTIVLR	1	1	Unmodified	1566.8366	0.83657007	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	8	4				1								1					13.735	13.735	3	0.00034893	6845	DP690-4	102.65	79.642			0.90541	1.0869	43.452	2	0	Median	82299000	41091000	41208000	5929	826	5556	11831;11832	29000;29001;29002;29003;29004;29005	29005		6	9606
HELQANCYEEVK	1	0	Unmodified	1518.6773	0.67729224	572	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	11.8	3.85								3							1	2	11.907	11.907	2;3	2.9269E-10	4452	DP690-16	244.71	217.82			0.84164	0.9189	6.212	5	0	Median	189990000	102150000	87849000	5930	572	5557	11833;11834;11835;11836;11837;11838	29006;29007;29008;29009;29010;29011;29012;29013;29014;29015;29016;29017;29018;29019;29020;29021;29022;29023;29024	29008		19	9606
HELQANCYEEVKDR	1	1	Unmodified	1789.8053	0.8053463	572	P23528	CFL1	Cofilin-1	yes	yes	0	0	1	10.8	3.93							1	6								4	11.231	11.231	2;3;4	1.1043E-15	3783	DP690-8	241.41	223.62			0.80792	0.91603	7.9909	9	0	Median	2978699999.9999995	1622099999.9999998	1356600000	5931	572	5558	11839;11840;11841;11842;11843;11844;11845;11846;11847;11848;11849	29025;29026;29027;29028;29029;29030;29031;29032;29033;29034;29035;29036;29037;29038;29039;29040;29041;29042;29043;29044;29045;29046;29047;29048;29049;29050;29051;29052;29053;29054;29055;29056;29057;29058;29059;29060	29052		36	9606
HELTEISNVDVETQSGK	1	0	Unmodified	1884.9065	0.90650013	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.83	0.687									2	3	1						14.323	14.323	2;3	8.0437E-36	8559	DP690-10	227.91	190.3			0.99711	1.2702	20.016	3	0	Median	140120000	59618000	80507000	5932	1145	5559	11850;11851;11852;11853;11854;11855	29061;29062;29063;29064;29065;29066;29067;29068;29069;29070;29071;29072;29073	29061		13	9606
HEMPPHIYAITDTAYR	0	1	Oxidation (M)	1929.9043	0.90433206	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															14.181	14.181	3	2.8439E-07	6698	DP690-2	145.52	118.06			0.96162	1.0028	NaN	1	0	Median	21609000	10309000	11300000	5933	668	5560	11856	29074;29075;29076;29077;29078;29079	29078	950	6	9606
HENVIGLLDVFTPAR	0	1	Unmodified	1679.8995	0.89950468	1357	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	0	6	0						1											20.981	20.981	3	0.0001506	15179	DP690-6	108.34	108.34			0.83707	0.93723	NaN	1	0	Median	2751500	1415600	1335900	5934	1357	5561	11857	29080;29081	29081		2	9606
HEQGLSTALSVEK	1	0	Unmodified	1397.7151	0.71505795	1876	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	13	0													1				13.21	13.21	2	0.00012852	6347	DP690-13	169.09	169.09			0.73436	0.84901	NaN	1	0	Median	57726000	30929000	26797000	5935	1876	5562	11858	29082;29083;29084	29083		3	9606
HEQILVLDPPTDLK	1	0	Unmodified	1616.8774	0.87737225	2293	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	0	15.3	0.471															2	1	17.274	17.274	2;3	3.4681E-06	11635	DP690-15	184.11	154.86			0.65395	0.71462	11.377	3	0	Plateau	273840000	157770000	116060000	5936	2293	5563	11859;11860;11861	29085;29086;29087;29088;29089;29090;29091;29092;29093;29094;29095;29096;29097;29098	29090		14	9606
HEQNIDCGGGYVK	1	0	Unmodified	1475.6463	0.64632646	603	P27797	CALR	Calreticulin	yes	yes	0	0	0	4.5	0.5				1	1												10.792	10.792	2	1.1788E-10	3262	DP690-5	240.8	205.99			1.5426	1.5978	0.75753	2	0	Median	24093000	9066400	15026000	5937	603	5564	11862;11863	29099;29100;29101;29102;29103;29104;29105;29106	29105		8	9606
HESGASIKIDEPLEGSEDR	1	1	Unmodified	2067.9709	0.9708913	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	12	0												2					13.614	13.614	3;4	1.613E-18	7045	DP690-12	212.59	176.06			0.80749	0.87203	2.4083	2	0	Median	568270000	313060000	255210000	5938	959	5565	11864;11865	29107;29108;29109;29110;29111;29112;29113;29114	29109		8	9606
HETEFAELEVK	1	0	Unmodified	1330.6405	0.64049603	333	O95619	YEATS4	YEATS domain-containing protein 4	yes	yes	0	0	0	15	0															1		14.667	14.667	2	0.0017946	8349	DP690-15	99.815	51.724			0.92363	1.0898	NaN	1	0	Median	21130000	9694700	11435000	5939	333	5566	11866	29115	29115		1	9606
HETWSGHVISS	0	0	Unmodified	1238.568	0.56799978	2449	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	yes	yes	0	0	0	8	0								1									12.497	12.497	2	0.02863	5447	DP690-8	93.162	61.859			NaN	NaN	NaN	0	0	Median	0	0	0	5940	2449	5567	11867	29116	29116		1	9606
HEVEKSEISENTDASGK	2	0	Unmodified	1858.8545	0.85446456	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	11	0											1						10.298	10.298	3	8.6294E-41	2529	DP690-11	329.21	300.67			0.94783	1.0439	NaN	1	0	Median	347090000	179010000	168080000	5941	2340	5568	11868	29117;29118;29119;29120	29118		4	9606
HEVEKSEISENTDASGKIEK	3	0	Unmodified	2229.0761	0.076084654	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	2	11	0											1						10.506	10.506	4	0.040417	2861	DP690-11	54.253	39.012			1.2608	1.3657	NaN	1	0	Median	135900000	56943000	78953000	5942	2340	5569	11869	29121	29121		1	9606
HEYGSPGILEFFHHQLK	1	0	Unmodified	2038.0061	0.006095016	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	7	4			1								1						17.378	17.378	4	0.00011421	12806	DP690-11	106.3	106.3			0.74839	0.85044	15.726	2	0	Median	111280000	60722000	50555000	5943	1531;1849	5570	11870;11871	29122;29123;29124	29122		3	9606
HFGLQILEHVVK	1	0	Unmodified	1418.8034	0.80341945	2158	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	3	0			1														17.497	17.497	3	0.00062598	11983	DP690-3	96.604	96.604			1.4245	1.5041	NaN	1	0	Median	8769000	3801900	4967200	5944	2158	5571	11872	29125;29126	29125		2	9606
HFLEAIENNK	1	0	Unmodified	1213.6091	0.60913632	1732	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	12	0												1					13.858	13.858	2	0.0028438	7383	DP690-12	96.668	57.914			0.98966	1.181	NaN	1	0	Median	70602000	28997000	41605000	5945	1732	5572	11873	29127	29127		1	9606
HFLLEEDKPEEPTAHAFVSTLTR	1	1	Unmodified	2666.334	0.33403068	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2.33	0.471		2	1														17.134	17.134	3;4	1.3187E-15	10238	DP690-2	169.85	152.11			0.66078	0.7303	6.8619	3	0	Plateau	156370000	91361000	65011000	5946	789	5573	11874;11875;11876	29128;29129;29130;29131;29132;29133;29134	29128		7	9606
HFLQQATQVNAWDR	0	1	Unmodified	1712.8383	0.83830141	688	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	0	12	0												1					15.648	15.648	3	0.022134	9902	DP690-12	55.98	36.693			0.86716	1.0294	NaN	1	0	Median	53209000	27582000	25627000	5947	688	5574	11877	29135;29136	29136		2	9606
HFNSMSGPATLR	0	1	Oxidation (M)	1332.6245	0.62446881	2453	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	1	0	13	0													2				10.727	10.727	2	0.015945	3072	DP690-13	99.752	46.258			NaN	NaN	NaN	0	0	Median	0	0	0	5948	2453	5575	11878;11879	29137;29138	29138	2902	2	9606
HFPEAGIHYPDSTTGDGKPLATDYNGNCSLEK	2	0	Unmodified	3490.5736	0.57356203	314	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	1	14	0														2			15.164	15.164	4;5	0.015647	9182	DP690-14	53.545	40.712			NaN	NaN	NaN	0	0	Median	40899000	40899000	0	5949	314	5576	11880;11881	29139;29140	29140		2	9606
HFRPELEER	0	2	Unmodified	1211.6047	0.60471964	809	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	yes	yes	0	0	1	13	0													1				10.621	10.621	3	0.0053548	2955	DP690-13	114.89	64.541			NaN	NaN	NaN	0	0	Median	16249000	0	16249000	5950	809	5577	11882	29141	29141		1	9606
HFSGLEEAVYR	0	1	Unmodified	1306.6306	0.63060004	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	4	0				2													14.694	14.694	2;3	5.5965E-05	8087	DP690-4	178.55	134.78			1.7723	1.9622	NaN	1	0	Median	42110000	16813000	25297000	5951	826	5578	11883;11884	29142;29143;29144;29145;29146;29147;29148;29149	29145		8	9606
HFSIMDFNSEKDIVR	1	1	Oxidation (M)	1852.8778	0.87778296	1511	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	1	1	2	0		1															15.825	15.825	3	0.043419	8743	DP690-2	49.066	39.788			1.4704	1.4475	NaN	1	0	Median	3215900	1242900	1973000	5952	1511	5579	11885	29150	29150	2198	1	9606
HFSLLESQR	0	1	Unmodified	1115.5724	0.57235688	2126	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	4	0				1													13.712	13.712	2	0.00087049	6919	DP690-4	127.56	87.213			0.78563	0.89621	NaN	1	0	Median	22965000	9967800	12997000	5953	2126	5580	11886	29151;29152	29152		2	9606
HFSTTTNNIQSR	0	1	Unmodified	1404.6746	0.67459012	812	P49848	TAF6	Transcription initiation factor TFIID subunit 6	yes	yes	0	0	0	11	0											1						10.489	10.489	2	0.0040416	2791	DP690-11	117.53	79.798			NaN	NaN	NaN	0	0	Median	0	0	0	5954	812	5581	11887	29153	29153		1	9606
HFSVEGQLEFR	0	1	Unmodified	1347.6571	0.65714914	416;409	P07900;Q14568;P08238;Q58FF7	HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	no	no	0	0	0	3	0			2														16.009	16.009	2;3	8.5175E-06	9954	DP690-3	159.94	122.32			1.0923	1.1425	1.139	2	0	Median	275550000	132950000	142610000	5955	409;416	5582	11888;11889	29154;29155;29156;29157;29158;29159	29158		6	9606
HFTEDGNILQLANLPDLYK	1	0	Unmodified	2200.1164	0.11643333	707	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	0	0	0	11	0											1						21.285	21.285	3	0.071012	18351	DP690-11	58.01	42.035			1.0079	1.2283	NaN	1	0	Median	32922000	12573000	20349000	5956	707	5583	11890	29160	29160		0	9606
HFTILDAPGHK	1	0	Unmodified	1234.6459	0.64585618	497;1624	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	3	0			1														12.762	12.762	3	0.052399	5593	DP690-3	65.627	11.561			NaN	NaN	NaN	0	0	Median	9757900	9757900	0	5957	497;1624	5584	11891	29161	29161		1	9606
HFVGMLPEK	1	0	Oxidation (M)	1072.5376	0.53755128	932	P60981	DSTN	Destrin	yes	yes	0	1	0	12	4								1								1	11.657	11.657	2	0.0024607	4153	DP690-8	120.62	68.139			0.77263	0.85994	6.9012	2	0	Median	82047000	46545000	35502000	5958	932	5585	11892;11893	29162;29163;29164;29165;29166;29167;29168	29165	1445	7	9606
HFVGMLPEK	1	0	Unmodified	1056.5426	0.54263666	932	P60981	DSTN	Destrin	yes	yes	0	0	0	8	0								1									13.469	13.469	2	0.0087085	6415	DP690-8	116.37	74.495			NaN	NaN	NaN	0	0	Median	3097700	0	3097700	5959	932	5585	11894	29169	29169		1	9606
HFVGMLPEKDCR	1	1	Oxidation (M)	1503.6963	0.69625354	932	P60981	DSTN	Destrin	yes	yes	0	1	1	10.7	3.77								2								1	10.856	10.856	3	9.684E-05	3317	DP690-8	169.52	151.38			0.78449	0.81453	11.31	3	0	Plateau	319070000	174330000	144740000	5960	932	5586	11895;11896;11897	29170;29171;29172;29173;29174;29175;29176;29177;29178;29179	29177	1445	10	9606
HFVGMLPEKDCR	1	1	Unmodified	1487.7013	0.70133892	932	P60981	DSTN	Destrin	yes	yes	0	0	1	8	0								1									12.346	12.346	3	0.0007048	5091	DP690-8	97.452	77.022			0.70736	0.82247	NaN	1	0	Median	10272000	5731100	4540500	5961	932	5586	11898	29180;29181;29182;29183	29180		4	9606
HGAGAEISTVHPEQYAK	1	0	Unmodified	1793.8697	0.86966111	1714	Q8TBX8	PIP4K2C	Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma	yes	yes	0	0	0	13	0													1				12.006	12.006	3	3.0718E-07	4697	DP690-13	135.61	105.8			0.81337	0.94498	NaN	1	0	Median	33035000	19360000	13675000	5962	1714	5587	11899	29184;29185	29184		2	9606
HGDEIITSTTSNYETQTFSSK	1	0	Unmodified	2345.0659	0.065913898	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							15.431	15.431	3	1.0351E-23	10183	DP690-10	205.92	205.92			0.88681	1.0942	NaN	1	0	Median	102640000	49297000	53343000	5963	1492	5588	11900	29186;29187;29188;29189;29190	29188		5	9606
HGDLPDIQIK	1	0	Unmodified	1134.6033	0.60332266	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7	3.56		1							1	1							14.707	14.707	2	0.0001013	8003	DP690-9	143.7	91.754			0.86161	0.89005	18.538	2	0	Median	477430000	143610000	333820000	5964	1046	5589	11901;11902;11903	29191;29192;29193;29194;29195;29196;29197;29198;29199;29200	29200		10	9606
HGEPEEDIVGLQAFQER	0	1	Unmodified	1952.9228	0.9228189	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	7.5	3.54			3						1	2	2						17.591	17.591	2;3	1.8656E-22	13195	DP690-10	290.1	241.91			0.78275	0.91655	11.305	6	0	Median	1090100000	632550000	457540000	5965	272	5590	11904;11905;11906;11907;11908;11909;11910;11911	29201;29202;29203;29204;29205;29206;29207;29208;29209;29210;29211;29212;29213;29214;29215;29216;29217;29218;29219;29220	29205		20	9606
HGESAWNLENR	0	1	Unmodified	1311.5956	0.59561152	530	P18669	PGAM1	Phosphoglycerate mutase 1	yes	yes	0	0	0	7	0							1										12.88	12.88	2	0.014348	5730	DP690-7	102.62	53.203			NaN	NaN	NaN	0	0	Median	4548200	0	4548200	5966	530	5591	11912	29221	29221		1	9606
HGEVCPAGWKPGSDTIKPDVQK	3	0	Unmodified	2405.1798	0.17977864	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	2	9.7	3.49							4	3							3		12.896	12.896	3;4;5	2.5584999999999997E-19	5727	DP690-7	179.84	160.78			0.68847	0.76723	6.6267	9	0	Median	4820200000	2791200000	2028899999.9999998	5967	1128	5592	11913;11914;11915;11916;11917;11918;11919;11920;11921;11922	29222;29223;29224;29225;29226;29227;29228;29229;29230;29231;29232;29233;29234;29235;29236;29237;29238;29239;29240;29241;29242;29243;29244;29245;29246;29247;29248;29249	29238		28	9606
HGFCGIPITDTGR	0	1	Unmodified	1429.6772	0.67723266	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	4	0				1													14.943	14.943	3	0.015581	8483	DP690-4	45.357	20.03			1.0421	1.2074	NaN	1	0	Median	16766000	7731400	9034500	5968	474	5593	11923	29250;29251;29252	29251		3	9606
HGGGGGGFGGGGFGSR	0	1	Unmodified	1319.5755	0.57554478	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	9.38	5.34		1	1			1		1	1						1	2	11.257	11.257	2;3	2.7029E-07	3822	DP690-16	166.11	131.72		+	NaN	NaN	NaN	0	0	Median	75738000	75738000	0	5969	44	5594	11924;11925;11926;11927;11928;11929;11930;11931	29253;29254;29255;29256;29257;29258;29259;29260;29261;29262;29263;29264;29265;29266	29256		14	9606
HGGVIHIYVDK	1	0	Unmodified	1236.6615	0.66150624	1277	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	12	0												1					11.979	11.979	3	0.063696	4750	DP690-12	48.998	25.62			1.0326	1.2339	NaN	1	0	Median	34919000	19336000	15583000	5970	1277	5595	11932	29267;29268	29268		2	9606
HGHLCPIDTGLIEK	1	0	Unmodified	1588.8032	0.80316145	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							13.786	13.786	3	0.009387	7844	DP690-10	48.467	6.9866			0.77417	0.92259	NaN	1	0	Median	240090000	142300000	97792000	5971	591	5596	11933	29269	29269		1	9606
HGINCFINR	0	1	Unmodified	1129.5451	0.54509627	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	4	0				1													12.87	12.87	2	0.03554	5729	DP690-4	111.82	70.386			NaN	NaN	NaN	0	0	Median	0	0	0	5972	1044	5597	11934	29270	29270		1	9606
HGIPTAQWK	1	0	Unmodified	1036.5454	0.54541385	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														12.185	12.185	2	0.0089636	4699	DP690-3	90.601	67.558			19.148	19.109	NaN	1	0	Median	338450000	14362000	324080000	5973	559	5598	11935	29271;29272;29273	29272		3	9606
HGLLVPNNTTDQELQHIR	0	1	Unmodified	2084.0763	0.076299846	907	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	15	0															1		14.798	14.798	3	3.5247E-06	8490	DP690-15	153.92	126.41			NaN	NaN	NaN	0	0	Median	20519000	0	20519000	5974	907	5599	11936	29274;29275	29274		2	9606
HGLPPSETIAIVEHINAK	1	0	Unmodified	1925.0371	0.037060793	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	7	0							1										16.358	16.358	3	2.7179E-13	9925	DP690-7	179.14	179.14			0.6846	0.72978	NaN	1	0	Median	92209000	59783000	32426000	5975	296	5600	11937	29276;29277	29277		2	9606
HGLYLPTR	0	1	Unmodified	955.52395	0.52395013	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															12.893	12.893	2	0.05632	5229	DP690-2	104.45	64.785			NaN	NaN	NaN	0	0	Median	0	0	0	5976	789	5601	11938	29278	29278		1	9606
HGNVASLVQR	0	1	Unmodified	1079.5836	0.58359027	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	7	4			1								1						11.061	11.061	2	0.0033119	3719	DP690-11	93.598	58.16			0.73124	0.84526	19.362	2	0	Median	108100000	56928000	51170000	5977	2501	5602	11939;11940	29279;29280;29281;29282;29283;29284;29285;29286	29282		8	9606
HGSGSGHSSSYGQHGSGSGWSSSSGR	0	1	Unmodified	2476.0137	0.013652602	54	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	1.5	0.5	1	1															10.268	10.268	4	3.061E-22	2116	DP690-1	189.09	169.16		+	NaN	NaN	NaN	0	0	Median	16426000	16426000	0	5978	54	5603	11941;11942	29287;29288;29289	29287		3	9606
HGSLGFLPR	0	1	Unmodified	982.53485	0.53484916	698	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	11	2									1				1				14.147	14.147	2	4.8389E-05	7476	DP690-13	199.07	129.89			0.76115	0.8998	9.6633	2	0	Median	207490000	113730000	93765000	5979	698	5604	11943;11944	29290;29291;29292;29293;29294;29295	29291		6	9606
HGSYEDAVHSGALND	0	0	Unmodified	1570.6648	0.6648133	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	8	4				1								1					13.052	13.052	2	3.3034E-07	5927	DP690-4	139.76	122.29			NaN	NaN	NaN	0	0	Median	0	0	0	5980	520	5605	11945;11946	29296;29297;29298;29299	29298		4	9606
HGVPPPCKPLASASISQK	2	0	Unmodified	1872.988	0.98800211	2114	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	1	2	0		1															11.136	11.136	3	0.0067536	3250	DP690-2	62.203	42.11			0.69801	0.72462	NaN	1	0	Median	1563000	725890	837130	5981	2114	5606	11947	29300;29301;29302	29301		3	9606
HGVQELEIELQSQLSK	1	0	Unmodified	1836.9581	0.95814177	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	4.67	2.91	2	1		2	1			2	1								19.142	19.142	2;3	3.56E-111	10726	DP690-1	314.45	249.17		+	NaN	NaN	NaN	0	0	Median	123510000	123510000	0	5982	667	5607	11948;11949;11950;11951;11952;11953;11954;11955;11956	29303;29304;29305;29306;29307;29308;29309;29310;29311;29312;29313;29314;29315;29316;29317;29318;29319;29320	29306		18	9606
HGVQELEIELQSQLSKK	2	0	Unmodified	1965.0531	0.053104788	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	5.25	2.68	1				1		1	1									17.789	17.789	3	2.3267E-08	11866	DP690-7	171.71	127.11		+	NaN	NaN	NaN	0	0	Median	43419000	43419000	0	5983	667	5608	11957;11958;11959;11960	29321;29322;29323;29324;29325;29326	29325		6	9606
HGVVPLATYMR	0	1	Oxidation (M)	1258.6492	0.64922699	758	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	1	0	15	0															1		13.09	13.09	3	0.0544	6138	DP690-15	50.791	28.463			0.86348	0.97546	NaN	1	0	Median	56283000	29228000	27054000	5984	758	5609	11961	29327	29327		1	9606
HGYIGEFEIIDDHR	0	1	Unmodified	1699.7954	0.79543354	968	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	16	0																2	16.29	16.29	2;3	1.7476E-05	10100	DP690-16	144.51	114.18			0.9269	1.018	10.038	2	0	Median	622410000	322520000	299890000	5985	968	5610	11962;11963	29328;29329;29330;29331;29332;29333;29334;29335	29331		8	9606
HHCPNTPIILVGTK	1	0	Unmodified	1585.8399	0.83988131	1012	P63000	RAC1	Ras-related C3 botulinum toxin substrate 1	yes	yes	0	0	0	11.5	3.5								1							1		12.701	12.701	3	0.00033977	5489	DP690-8	98.942	69.587			0.79206	0.92454	20.135	2	0	Median	38146000	20859000	17287000	5986	1012	5611	11964;11965	29336;29337;29338;29339;29340	29339		5	9606
HHGDVMDLQFFDQER	0	1	Unmodified	1872.8213	0.82133071	1698	Q8NFH3	NUP43	Nucleoporin Nup43	yes	yes	0	0	0	14	0														1			17.551	17.551	4	0.015766	12393	DP690-14	76.868	56.344			NaN	NaN	NaN	0	0	Median	11010000	11010000	0	5987	1698	5612	11966	29341	29341		1	9606
HHGTPMLLDGVK	1	0	Oxidation (M)	1319.6656	0.66560534	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	1	0	6	2.24		1	2	1	23	10	6	2	1				2	1			15.308	15.308	2;3	5.1421E-05	3243	DP690-6	134.3	110.58			66.232	65.472	47.803	11	0	Median	47712000000	458940000	47253000000	5988	2071	5613	11967;11968;11969;11970;11971;11972;11973;11974;11975;11976;11977;11978;11979;11980;11981;11982;11983;11984;11985;11986;11987;11988;11989;11990;11991;11992;11993;11994;11995;11996;11997;11998;11999;12000;12001;12002;12003;12004;12005;12006;12007;12008;12009;12010;12011;12012;12013;12014;12015	29342;29343;29344;29345;29346;29347;29348;29349;29350;29351;29352;29353;29354;29355;29356;29357;29358;29359;29360;29361;29362;29363;29364;29365;29366;29367;29368;29369;29370;29371;29372;29373;29374;29375;29376;29377;29378;29379;29380;29381;29382;29383;29384;29385;29386;29387;29388;29389;29390;29391;29392;29393;29394;29395;29396;29397;29398;29399;29400;29401;29402;29403;29404;29405;29406;29407;29408;29409;29410;29411;29412;29413;29414;29415;29416;29417;29418;29419;29420;29421;29422;29423;29424;29425;29426;29427;29428	29386	2591	87	9606
HHGTPMLLDGVK	1	0	Unmodified	1303.6707	0.67069072	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	6.14	2.84		1	1	2	14	4	2	2					1	2			14.092	14.092	2;3	9.8428E-12	5637	DP690-5	190.57	142.61			62.84	64.484	11.681	2	0	Median	7333299999.999999	31476000	7301899999.999999	5989	2071	5613	12016;12017;12018;12019;12020;12021;12022;12023;12024;12025;12026;12027;12028;12029;12030;12031;12032;12033;12034;12035;12036;12037;12038;12039;12040;12041;12042;12043;12044	29429;29430;29431;29432;29433;29434;29435;29436;29437;29438;29439;29440;29441;29442;29443;29444;29445;29446;29447;29448;29449;29450;29451;29452;29453;29454;29455;29456;29457;29458;29459;29460;29461;29462;29463;29464;29465;29466;29467;29468;29469;29470;29471;29472;29473;29474;29475;29476;29477;29478;29479;29480;29481	29453		52	9606
HHIETGGGQLPAK	1	0	Unmodified	1343.6946	0.69459728	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	7.33	3.77		1								2							10.31	10.31	3	1.8559E-05	2285	DP690-2	107.85	65.636			2.0357	2.0451	NaN	1	0	Median	118910000	114180000	4729600	5990	1782	5614	12045;12046;12047	29482;29483;29484;29485	29484		4	9606
HHNQSTAINLNNPESQSMHLETR	0	1	Oxidation (M)	2673.2314	0.23137329	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	1	0	10	0										1							12.099	12.099	4	0.00027657	5284	DP690-10	92.8	84.481			0.79333	0.9936	NaN	1	0	Median	48366000	26346000	22019000	5991	1252	5615	12048	29486	29486	1897	1	9606
HHPDLIFCR	0	1	Unmodified	1193.5764	0.5763964	1536	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	0	13.3	3.77								1								2	12.78	12.78	2;3	0.0010468	5572	DP690-16	107.57	78.998			6.7938	7.5773	121.86	3	0	Median	491790000	79882000	411910000	5992	1536	5616	12049;12050;12051	29487;29488;29489;29490;29491;29492;29493;29494;29495;29496	29489		10	9606
HHSDGSVSLSGHLQPPPVTTEQHGAR	0	1	Unmodified	2730.3222	0.32223721	160	O15533	TAPBP	Tapasin	yes	yes	0	0	0	13	0													1				12.318	12.318	5	5.7662E-09	5031	DP690-13	144.3	134.98			0.53524	0.61408	NaN	1	0	Median	212420000	136240000	76184000	5993	160	5617	12052	29497;29498;29499;29500	29500		4	9606
HHSVLMSLLCAHLGLSPK	1	0	Oxidation (M)	2015.0445	0.044471132	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	1	0	5	0					1												17.369	17.369	4	3.3558E-05	11075	DP690-5	118.55	118.55			0.68478	0.6837	NaN	1	0	Median	33767000	18798000	14969000	5994	2385	5618	12053	29501;29502;29503	29502	2812	3	9606
HHYEQQQEDLAR	0	1	Unmodified	1552.7019	0.7018675	1297	Q14839;Q8TDI0;Q12873	CHD4;CHD5;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3	yes	no	0	0	0	10	0										1							10.357	10.357	3	0.00033188	2707	DP690-10	128.08	94.854			NaN	NaN	NaN	0	0	Median	0	0	0	5995	1297	5619	12054	29504	29504		1	9606
HIAEDADRKYEEVAR	1	2	Unmodified	1800.8755	0.87547477	434	P09493	TPM1	Tropomyosin alpha-1 chain	yes	yes	0	0	2	15	0															1		11.167	11.167	4	0.0008499	3805	DP690-15	101.32	84.067			0.72598	0.80622	NaN	1	0	Median	28214000	17510000	10704000	5996	434	5620	12055	29505;29506	29506		2	9606
HIAEEADRKYEEVAR	1	2	Unmodified	1814.8911	0.89112484	1028;398	P67936;P06753	TPM4;TPM3	Tropomyosin alpha-4 chain;Tropomyosin alpha-3 chain	no	no	0	0	2	13.2	3.63							1								2	1	11.022	11.022	4	3.0725E-05	4056	DP690-15	147.33	129.58			0.77159	0.79935	18.904	4	0	Median	702420000	326440000	375990000	5997	1028;398	5621	12056;12057;12058;12059	29507;29508;29509;29510;29511;29512;29513;29514;29515;29516	29508		9	9606
HIANYISGIQTIGHR	0	1	Unmodified	1678.8903	0.89033698	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10	0.816									1	1	1						14.841	14.841	3	5.2944E-06	9280	DP690-10	168.93	168.93			0.88866	1.0226	7.8158	3	0	Plateau	503200000	271720000	231470000	5998	1329	5622	12060;12061;12062	29517;29518;29519;29520;29521;29522;29523;29524;29525;29526;29527;29528	29520		12	9606
HIAVVLEEIPK	1	0	Unmodified	1246.7285	0.72852317	68	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	12	0												1					16.171	16.171	2	0.0017946	10723	DP690-12	99.815	99.815			0.74723	0.88985	NaN	1	0	Median	40852000	22891000	17961000	5999	68	5623	12063	29529;29530	29529		2	9606
HIDMVEGDEGR	0	1	Unmodified	1256.5455	0.54554978	861	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	11	0											1						11.592	11.592	2	0.0015348	4401	DP690-11	102.06	76.502			0.78607	0.95229	NaN	1	0	Median	20963000	11567000	9395700	6000	861	5624	12064	29531	29531		1	9606
HIEIFTDLSSR	0	1	Unmodified	1316.6725	0.67246486	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	7	4			1								1						16.503	16.503	2	0.00045855	10528	DP690-3	114.86	99.196			2.9894	3.2581	NaN	1	0	Median	119950000	74726000	45222000	6001	480	5625	12065;12066	29532;29533;29534;29535;29536	29534		5	9606
HIGISFTPK	1	0	Unmodified	998.55492	0.5549159	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	8	3.54		1							1	1	1						13.734	13.734	2	7.9181E-05	7603	DP690-10	174.27	115.46			0.81779	0.97656	6.0266	4	0	Median	550990000	306790000	244200000	6002	1270	5626	12067;12068;12069;12070	29537;29538;29539;29540;29541;29542;29543;29544;29545	29540		9	9606
HILLAVANDEELNQLLK	1	0	Unmodified	1932.068	0.068026571	249	O75367;Q9P0M6	H2AFY;H2AFY2	Core histone macro-H2A.1;Core histone macro-H2A.2	yes	no	0	0	0	14	0														1			20.121	20.121	3	1.5433E-06	15822	DP690-14	132.23	113.56			0.98552	1.1961	NaN	1	0	Median	62876000	27293000	35583000	6003	249	5627	12071	29546;29547;29548	29548		3	9606
HIMGQNVADYMR	0	1	2 Oxidation (M)	1465.6442	0.64421797	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	2	0	10	4						2								2			10.926	10.926	2;3	0.0042719	3299	DP690-14	90.827	38.829			1.0815	1.2748	6.8709	4	0	Median	65278000	30666000	34612000	6004	757	5628	12072;12073;12074;12075	29549;29550;29551;29552;29553;29554;29555;29556;29557	29549	1124;1125	9	9606
HIMGQNVADYMR	0	1	Oxidation (M)	1449.6493	0.64930335	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	0	14	0														1			13.559	13.559	2	0.010682	6904	DP690-14	81.95	59.612			0.88526	1.0734	NaN	1	0	Median	34558000	13966000	20591000	6005	757	5628	12076	29558	29558	1124;1125	1	9606
HIMGQNVADYMR	0	1	Unmodified	1433.6544	0.65438873	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	14	0														1			14.951	14.951	2	0.0097369	8828	DP690-14	108.43	55.342			NaN	NaN	NaN	0	0	Median	0	0	0	6006	757	5628	12077	29559	29559		1	9606
HINPVAASLIQK	1	0	Unmodified	1289.7456	0.74557022	871	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	12	0												1					14.025	14.025	2	4.0751E-05	7589	DP690-12	147.28	123.05			0.72074	0.85928	NaN	1	0	Median	54964000	31277000	23687000	6007	871	5629	12078	29560;29561	29561		2	9606
HINTWVAEK	1	0	Unmodified	1096.5665	0.56654322	661	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	6	0						1											11.512	11.512	2	0.051851	4083	DP690-6	87.806	44.937			NaN	NaN	NaN	0	0	Median	3383400	0	3383400	6008	661	5630	12079	29562	29562		1	9606
HIPGSPFTAK	1	0	Unmodified	1053.5607	0.56072956	1270;250	O75369;Q14315	FLNB;FLNC	Filamin-B;Filamin-C	no	no	0	0	0	2	0		1															12.524	12.524	2	0.038687	4731	DP690-2	68.016	23.621			0.90014	0.90241	NaN	1	0	Median	4722900	2279200	2443700	6009	250;1270	5631	12080	29563;29564	29564		2	9606
HIQKEDVPSER	1	1	Unmodified	1336.6735	0.67352749	32	CON__P02662			yes	yes	0	0	1	1.5	0.5	1	1															10.28	10.28	3	3.1825E-11	2100	DP690-1	172.17	113.66		+	NaN	NaN	NaN	0	0	Median	184280000	184280000	0	6010	32	5632	12081;12082	29565;29566;29567;29568	29566		4	
HIQQVDCSGNDLEQLHIK	1	0	Unmodified	2133.0273	0.027300743	867	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	11	0											3						14.475	14.475	3	3.7924E-11	8630	DP690-11	186.97	147.22			NaN	NaN	NaN	0	0	Median	27591000	27591000	0	6011	867	5633	12083;12084;12085	29569;29570;29571;29572	29571		4	9606
HISDLYEDLR	0	1	Unmodified	1259.6146	0.61461563	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								15.962	15.962	2	0.018504	9783	DP690-9	101.46	62.207			NaN	NaN	NaN	0	0	Median	12407000	0	12407000	6012	1319	5634	12086	29573;29574	29573		2	9606
HISDLYEDLRDGHNLISLLEVLSGDSLPR	0	2	Unmodified	3275.6786	0.67861945	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0										1							25.103	25.103	5	0.0019323	23156	DP690-10	60.943	60.943			0.7864	0.93664	NaN	1	0	Median	10025000	6546300	3478700	6013	1319	5635	12087	29575	29575		0	9606
HITTLQASFLTK	1	0	Unmodified	1358.7558	0.75580056	2383	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	15	0															1		15.511	15.511	2	8.9322E-10	9463	DP690-15	245.13	207.31			0.87941	1.0006	NaN	1	0	Median	73160000	39936000	33224000	6014	2383	5636	12088	29576;29577;29578;29579;29580;29581	29581		6	9606
HIVPACFLAPLK	1	0	Unmodified	1364.7639	0.76386282	182	O43592	XPOT	Exportin-T	yes	yes	0	0	0	3	0			1														17.681	17.681	2	0.0023555	12235	DP690-3	92.439	73.086			0.88124	0.94676	NaN	1	0	Median	16621000	8997300	7623600	6015	182	5637	12089	29582;29583;29584	29582		3	9606
HIYYITGETK	1	0	Unmodified	1223.6186	0.61863837	409	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	yes	no	0	0	0	3	0			1														12.749	12.749	2	0.0017238	5571	DP690-3	104.01	65.263			2.4991	2.6769	NaN	1	0	Median	22060000	6913600	15147000	6016	409	5638	12090	29585;29586	29585		2	9606
HKDAAIYLVTSLASK	2	0	Unmodified	1615.8934	0.89335667	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	3	0			1														16.693	16.693	3	0.0041848	10929	DP690-3	55.546	26.589			0.9228	0.99535	NaN	1	0	Median	26583000	13304000	13279000	6017	892	5639	12091	29587;29588	29587		2	9606
HKDLQQQLVDAK	2	0	Unmodified	1421.7627	0.76267685	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	1	11	0											1						11.589	11.589	3	0.0011398	4389	DP690-11	91.202	58.763			0.97281	1.1044	NaN	1	0	Median	142650000	77503000	65143000	6018	701	5640	12092	29589;29590;29591	29591		3	9606
HKELFALHPSPDEEEPIER	1	1	Unmodified	2272.1124	0.11241058	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	1	10	0										1							14.161	14.161	4	0.048849	8317	DP690-10	38.915	24.606			0.48786	0.61249	NaN	1	0	Median	80062000	50873000	29189000	6019	1901	5641	12093	29592	29592		1	9606
HKLDVTSVEDYK	2	0	Unmodified	1432.7198	0.71980898	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	12	0												1					13.145	13.145	3	0.00069102	6364	DP690-12	80.312	60.181			0.97217	1.0973	NaN	1	0	Median	118480000	55102000	63375000	6020	779	5642	12094	29593;29594;29595;29596	29595		4	9606
HKNMSVHLSPCFR	1	1	Oxidation (M)	1627.7711	0.77114982	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	1	1	15.5	0.5															1	1	10.498	10.498	4	0.00018895	2986	DP690-16	108.68	86.871			0.77265	0.83285	1.7574	2	0	Median	259200000	142060000	117140000	6021	976	5643	12095;12096	29597;29598;29599;29600;29601	29598	1492	5	9606
HKPDFISLFK	2	0	Unmodified	1230.6761	0.67609367	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	1	10	0										1							16.21	16.21	3	0.00055856	11284	DP690-10	90.913	43.726			0.70613	0.88062	NaN	1	0	Median	81169000	45560000	35609000	6022	1783	5644	12097	29602;29603	29602		2	9606
HKPLLIDMNK	2	0	Unmodified	1207.6747	0.67471346	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0.816									1	1	1						11.775	11.775	3	0.0078531	4817	DP690-10	61.958	30.611			0.68183	0.8011	9.0244	3	0	Median	363960000	225600000	138360000	6023	1319	5645	12098;12099;12100	29604;29605;29606;29607;29608;29609;29610;29611	29607		8	9606
HLADHGQLSGIQR	0	1	Unmodified	1430.7379	0.73785908	222	O60783	MRPS14	28S ribosomal protein S14, mitochondrial	yes	yes	0	0	0	16	0																1	10.623	10.623	3	1.4447E-05	3135	DP690-16	149.69	96.482			0.93729	1.037	NaN	1	0	Median	87197000	45132000	42066000	6024	222	5646	12101	29612;29613;29614;29615	29613		4	9606
HLAEHSPYYEAMK	1	0	Oxidation (M)	1590.7137	0.71367774	1171	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	1	0	4	0				1													10.473	10.473	3	0.005945	2889	DP690-4	73.082	53.811			1.0318	1.1246	NaN	1	0	Median	10787000	5670000	5116700	6025	1171	5647	12102	29616;29617	29617	1821	2	9606
HLAGLAELLPESR	0	1	Unmodified	1404.7725	0.77251325	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								18.017	18.017	3	0.026776	12483	DP690-9	55.261	27.932			0.65091	0.81273	NaN	1	0	Median	3831600	2155700	1675900	6026	2217	5648	12103	29618;29619	29619		2	9606
HLAGLGLTEAIDK	1	0	Unmodified	1336.7351	0.73506511	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	5	0					1												15.775	15.775	2	4.726E-06	8997	DP690-5	192.44	142.09			0.93263	0.92734	NaN	1	0	Median	155650000	80943000	74705000	6027	819	5649	12104	29620	29620		1	9606
HLAGLGLTEAIDKNK	2	0	Unmodified	1578.873	0.87295558	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	1	9	4					1								1				14.209	14.209	3	1.5472E-25	7609	DP690-13	211.77	181.04			NaN	NaN	NaN	0	0	Median	509430000	509430000	0	6028	819	5650	12105;12106	29621;29622;29623;29624	29621		4	9606
HLCAVYYNK	1	0	Unmodified	1166.5543	0.55426398	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	6.67	3.77				2								1					11.27	11.27	2	8.5264E-05	3868	DP690-4	143.37	115.54			0.99197	1.0433	11.758	3	0	Median	523930000	266620000	257310000	6029	2210	5651	12107;12108;12109	29625;29626;29627;29628;29629;29630;29631;29632;29633;29634;29635	29634		11	9606
HLCEPGADGAETFADGVPR	0	1	Unmodified	1997.8901	0.89013856	1297	Q14839;Q8TDI0	CHD4;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5	yes	no	0	0	0	10	0										1							15.489	15.489	3	0.00019274	10186	DP690-10	98.165	68.584			1.2237	1.5118	NaN	1	0	Median	119750000	39085000	80665000	6030	1297	5652	12110	29636;29637	29636		2	9606
HLCQQLQAEQAAAEKR	1	1	Unmodified	1879.9323	0.93227815	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	1	10	0										1							12.079	12.079	3	0.027806	5287	DP690-10	63.462	17.052			NaN	NaN	NaN	0	0	Median	15543000	15543000	0	6031	1301	5653	12111	29638	29638		1	9606
HLDGEEDGSSDQSQASGTTGGR	0	1	Unmodified	2189.9057	0.90572486	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	4	0				2													10.314	10.314	2;3	5.0733E-63	2608	DP690-4	282.97	265.23			0.95047	1.049	23.639	2	0	Median	118280000	62997000	55288000	6032	2405	5654	12112;12113	29639;29640;29641;29642;29643;29644	29640		6	9606
HLDLDPLDHR	0	1	Unmodified	1229.6153	0.61528433	294	O94851	MICAL2	Protein-methionine sulfoxide oxidase MICAL2	yes	yes	0	0	0	11	0											1						14.974	14.974	3	0.0033612	9392	DP690-11	83.869	83.869			0.67924	0.81511	NaN	1	0	Median	62282000	36946000	25336000	6033	294	5655	12114	29645;29646	29645		2	9606
HLEAAALLSER	0	1	Unmodified	1208.6513	0.65133548	2358	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	4	0				1													14.917	14.917	2	0.00026042	8480	DP690-4	153.97	96.793			0.95765	1.1168	NaN	1	0	Median	14644000	6914000	7730400	6034	2358	5656	12115	29647;29648;29649;29650	29650		4	9606
HLEEIVHVEQGR	0	1	Unmodified	1444.7423	0.74227576	1083	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	3	0			3														12.375	12.375	3	0.0008237	5137	DP690-3	116.03	79.453			NaN	NaN	NaN	0	0	Median	22534000	22534000	0	6035	1083	5657	12116;12117;12118	29651;29652;29653;29654	29654		4	9606
HLEHSTIIYEDPQHHPLLR	0	1	Unmodified	2334.1869	0.18691293	956	P61962	DCAF7	DDB1- and CUL4-associated factor 7	yes	yes	0	0	0	14	0														1			13.115	13.115	5	6.7036E-12	6234	DP690-14	166.3	150.82			0.66927	0.78421	NaN	1	0	Median	154090000	89713000	64374000	6036	956	5658	12119	29655;29656;29657	29657		3	9606
HLEINPDHPIVETLR	0	1	Unmodified	1781.9424	0.94243213	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	3	0			4														15.195	15.195	2;3;4	4.1067E-10	8930	DP690-3	201.06	179.22			0.80704	0.83234	7.153	2	0	Median	492110000	264730000	227380000	6037	416	5659	12120;12121;12122;12123	29658;29659;29660;29661;29662;29663;29664;29665;29666;29667;29668;29669;29670	29663		13	9606
HLEINPDHSIIETLR	0	1	Unmodified	1785.9373	0.93734675	409	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	3	0			1														16.251	16.251	3	0.00018864	10377	DP690-3	115.1	94.45			1.1019	1.2288	NaN	1	0	Median	38319000	17898000	20421000	6038	409	5660	12124	29671	29671		1	9606
HLEPALAFQLELNR	0	1	Unmodified	1649.8889	0.88893999	1179	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	0	0	2	0		1															18.709	18.709	3	0.0015605	12071	DP690-2	83.204	56.198			1.2197	1.2488	NaN	1	0	Median	1854100	864930	989220	6039	1179	5661	12125	29672;29673	29672		2	9606
HLETFEHPNVVR	0	1	Unmodified	1476.7474	0.74736113	1072	Q00534	CDK6	Cyclin-dependent kinase 6	yes	yes	0	0	0	6	0						1											12.354	12.354	3	0.00015777	4911	DP690-6	119.27	119.27			1.188	1.3594	NaN	1	0	Median	13375000	6040900	7334100	6040	1072	5662	12126	29674;29675	29675		2	9606
HLFAILGGSEGK	1	0	Unmodified	1227.6612	0.66117189	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	6	4		1								1							16.26	16.26	2	3.9906E-05	11333	DP690-10	151.22	110.23			0.81255	1.0031	NaN	1	0	Median	85836000	50936000	34900000	6041	1782	5663	12127;12128	29676;29677;29678;29679	29678		4	9606
HLFGQPNSAYDFK	1	0	Unmodified	1522.7205	0.72047768	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	11	0											1						15.326	15.326	2	0.038606	9855	DP690-11	91.549	14.706			NaN	NaN	NaN	0	0	Median	0	0	0	6042	317	5664	12129	29680	29680		1	9606
HLGGIPWTYAEDAVPTLTPCR	0	1	Unmodified	2353.1525	0.15250126	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	13.3	0.471													2	1			20.166	20.166	2;3	3.7389999999999997E-23	15719	DP690-13	204.18	171.48			0.70271	0.8392	14.74	2	0	Median	232770000	151710000	81060000	6043	637	5665	12130;12131;12132	29681;29682;29683;29684;29685;29686;29687	29685		7	9606
HLGYKPEEYK	2	0	Unmodified	1262.6295	0.62953741	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	1	11	0											1						10.524	10.524	3	3.8221E-05	2904	DP690-11	123.86	75.773			0.78325	0.86402	NaN	1	0	Median	331340000	179080000	152270000	6044	65	5666	12133	29688	29688		1	9606
HLHQAVSIGQSLK	1	0	Unmodified	1416.7837	0.78374664	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9	0									1								11.45	11.45	3	0.0051864	3849	DP690-9	72.705	54.515			0.81301	1.036	NaN	1	0	Median	8579000	4386000	4193000	6045	1102	5667	12134	29689;29690;29691;29692	29691		4	9606
HLIEMGYLQGGK	1	0	Oxidation (M)	1360.6809	0.68092105	1703	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	yes	yes	0	1	0	13	0													1				13.133	13.133	2	0.00032981	6142	DP690-13	145.25	95.214			0.76877	0.89018	NaN	1	0	Median	43524000	22034000	21490000	6046	1703	5668	12135	29693;29694;29695;29696	29693	2298	4	9606
HLLFQSHMATK	1	0	Unmodified	1311.6758	0.6757761	2296	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	13	0													1				11.857	11.857	3	1.4242E-07	4508	DP690-13	171.92	120.4			NaN	NaN	NaN	0	0	Median	17464000	0	17464000	6047	2296	5669	12136	29697;29698	29698		2	9606
HLLGVEDLLQK	1	0	Unmodified	1263.7187	0.71868677	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							18.091	18.091	2	0.00015441	13980	DP690-10	160.36	120.74			0.84989	1.0499	NaN	1	0	Median	148840000	80328000	68512000	6048	1080	5670	12137	29699;29700;29701;29702	29702		4	9606
HLLIGVSSDR	0	1	Unmodified	1095.6037	0.60365701	678	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	14.5	0.5														1	1		13.148	13.148	2	9.6008E-05	6335	DP690-14	145.16	111.36			0.88237	1.0119	18.725	2	0	Median	212410000	113350000	99052000	6049	678	5671	12138;12139	29703;29704;29705;29706;29707	29704		5	9606
HLLLVDPEGVVR	0	1	Unmodified	1345.7718	0.77178497	613	P29353;P98077	SHC1;SHC2	SHC-transforming protein 1;SHC-transforming protein 2	yes	no	0	0	0	4	0				2													17.089	17.089	2;3	0.00036756	11279	DP690-4	116.3	116.3			0.77406	0.90174	3.6492	2	0	Median	23569000	13373000	10196000	6050	613	5672	12140;12141	29708;29709;29710;29711;29712;29713	29709		6	9606
HLLPVETQR	0	1	Unmodified	1091.6087	0.60874239	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								12.291	12.291	2	0.0052887	4837	DP690-9	98.629	74.475			0.87741	0.98199	1.9541	2	0	Median	46152000	25159000	20993000	6051	1264	5673	12142;12143	29714;29715;29716;29717;29718;29719;29720;29721;29722	29720		9	9606
HLLQAPLDDAQEILQAR	0	1	Unmodified	1930.0272	0.027224389	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	7	4			2								2						19.609	19.609	2;3	8.0431E-08	16041	DP690-11	155.1	131.3			0.80151	0.96663	NaN	1	0	Median	96748000	50011000	46737000	6052	1333	5674	12144;12145;12146;12147	29723;29724;29725;29726;29727;29728;29729	29723		7	9606
HLLQAPVDDAQEILHSR	0	1	Unmodified	1941.0068	0.0068232975	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	7.67	3.4			1						1		1						16.963	16.963	3	3.3501E-18	12161	DP690-11	219.03	219.03			0.94457	1.09	18.453	3	0	Median	256610000	137090000	119520000	6053	1332	5675	12148;12149;12150	29730;29731;29732;29733;29734;29735;29736;29737;29738	29732		9	9606
HLLSSDQMMDSILADEAFFSVNSSSESLNHLLYDEFVK	1	0	2 Oxidation (M)	4349.9984	0.99843454	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	9	0									1								24.057	24.057	4	1.7924E-12	19564	DP690-9	105.79	95.781			0.99173	1.25	NaN	1	0	Median	6403100	3698600	2704500	6054	1046	5676	12151	29739;29740;29741;29742	29742	1608;1609	4	9606
HLLVSNVGGDGEEIER	0	1	Unmodified	1722.8537	0.8536767	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	7.89	3.51			3						1	2	3						14.339	14.339	2;3	1.2175E-22	8470	DP690-10	197.7	197.7			0.88727	0.97343	26.392	6	0	Median	1847999999.9999998	996430000	851520000	6055	272	5677	12152;12153;12154;12155;12156;12157;12158;12159;12160	29743;29744;29745;29746;29747;29748;29749;29750;29751;29752;29753;29754;29755;29756;29757;29758;29759;29760;29761;29762;29763;29764;29765;29766;29767	29743		25	9606
HLMLPDFDLLEDIESK	1	0	Oxidation (M)	1929.9394	0.93938016	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	1	0	11	0											2						22.365	22.365	2;3	1.1577E-05	19783	DP690-11	129.37	106.59			0.69578	0.85395	8.3319	2	0	Median	46330000	26635000	19696000	6056	480	5678	12161;12162	29768;29769;29770;29771;29772;29773	29773	594	6	9606
HLNDLLEDRK	1	1	Unmodified	1251.6571	0.65714914	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	1	10	0										1							12.218	12.218	3	0.02566	5414	DP690-10	62.166	32.24			NaN	NaN	NaN	0	0	Median	114320000	114320000	0	6057	311	5679	12163	29774	29774		1	9606
HLNEIDLFHCIDPNDSK	1	0	Unmodified	2065.9527	0.95273882	1321	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	12	4								1								1	17.681	17.681	3	4.6131E-05	11053	DP690-8	119.51	103.88			0.89784	1.0378	0.15416	2	0	Median	16198000	8616800	7581000	6058	1321	5680	12164;12165	29775;29776;29777;29778;29779;29780	29779		6	9606
HLNLSAAHHHSSEGLGR	0	1	Unmodified	1821.8983	0.8982759	1895	Q96ME1	FBXL18	F-box/LRR-repeat protein 18	yes	yes	0	0	0	4	0				1													10.221	10.221	4	4.5209E-07	2506	DP690-4	140.49	118.95			0.88065	1.0099	NaN	1	0	Median	20653000	10762000	9890600	6059	1895	5681	12166	29781;29782;29783;29784	29781		4	9606
HLPDNECIEK	1	0	Unmodified	1253.571	0.57103625	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	8	4				1								1					10.718	10.718	2	0.00053351	3136	DP690-4	117.71	83.533			0.79019	0.90061	16.32	2	0	Median	84775000	54221000	30554000	6060	886	5682	12167;12168	29785;29786;29787;29788;29789	29787		5	9606
HLPSTEPDPHVVR	0	1	Unmodified	1482.7579	0.75792582	2012	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	3	0			1														11.19	11.19	3	0.039905	3600	DP690-3	45.28	31.511			0.60577	0.67822	NaN	1	0	Median	7273800	4742300	2531500	6061	2012	5683	12169	29790	29790		1	9606
HLQDSLADLK	1	0	Unmodified	1138.5982	0.59823728	1511	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	2	0		1															14.09	14.09	2	0.0027236	6607	DP690-2	97.456	54.21			0.91127	0.91523	NaN	1	0	Median	6517700	3160600	3357200	6062	1511	5684	12170	29791;29792	29791		2	9606
HLQLAIR	0	1	Unmodified	849.51847	0.51847082	442;1370;378;441	Q71UI9;P0C0S5;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13;Q93077;Q7L7L0;P04908	H2AFV;H2AFZ;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3;HIST1H2AC;HIST3H2A;HIST1H2AB	Histone H2A.V;Histone H2A.Z;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E	no	no	0	0	0	16	0																1	12.241	12.241	2	0.055475	4997	DP690-16	105.27	33.909			NaN	NaN	NaN	0	0	Median	33308000	0	33308000	6063	441;442;1370;378	5685	12171	29793	29793		1	9606
HLQLAIRNDEELNK	1	1	Unmodified	1691.8955	0.89548193	442;1370;378	Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13;Q93077;Q7L7L0;P04908	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3;HIST1H2AC;HIST3H2A;HIST1H2AB	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E	no	no	0	0	1	12	4								1								1	13.152	13.152	3	1.3741E-05	6095	DP690-16	132.32	102.41			0.91035	0.99461	10.516	2	0	Median	245370000	118480000	126890000	6064	442;1370;378	5686	12172;12173	29794;29795;29796;29797	29795		4	9606
HLQLSFQEPHFYLR	0	1	Unmodified	1813.9264	0.92638813	1065	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	3	0			1														17.673	17.673	3	0.055079	12187	DP690-3	45.347	45.347			1.4647	1.673	NaN	1	0	Median	13595000	6280500	7314000	6065	1065	5687	12174	29798	29798		1	9606
HLQQGSESPMMIGELR	0	1	2 Oxidation (M)	1843.8557	0.85566731	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	2	0	2	0		1															12.963	12.963	3	0.0038125	5407	DP690-2	69.878	52.376			0.85125	0.89084	NaN	1	0	Median	7065500	3629200	3436300	6066	2418	5688	12175	29799	29799	2842;2843	1	9606
HLQTGENHTSVDPR	0	1	Unmodified	1589.7546	0.75463136	298	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	11	0											2						10.298	10.298	3	0.071616	2525	DP690-11	58.098	14.3			0.76134	0.91428	NaN	1	0	Median	109990000	51482000	58510000	6067	298	5689	12176;12177	29800;29801	29801		2	9606
HLSDHLSELVEQTLSDLEQSK	1	0	Unmodified	2407.1867	0.18669774	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	9.33	0.471									2	1							23.402	23.402	3;4	2.3326E-05	21165	DP690-10	120.11	97.731			0.95304	1.1552	9.0921	3	0	Median	12605000	6529300	6075800	6068	269	5690	12178;12179;12180	29802;29803;29804;29805;29806;29807;29808;29809	29803		7	9606
HLSPYATLTVGDSSHK	1	0	Unmodified	1711.8529	0.85294842	1993	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	3	0			1														13.264	13.264	3	7.6984E-05	6253	DP690-3	115.68	74.14			1.1255	1.2024	NaN	1	0	Median	24423000	12298000	12125000	6069	1993	5691	12181	29810;29811	29810		2	9606
HLSVGAPGVVTITHHK	1	0	Unmodified	1651.9158	0.91582345	2037	Q9BXB5	OSBPL10	Oxysterol-binding protein-related protein 10	yes	yes	0	0	0	11	0											1						12.046	12.046	3	0.00049403	5137	DP690-11	90.725	73.484			0.64459	0.78222	NaN	1	0	Median	76714000	42201000	34513000	6070	2037	5692	12182	29812;29813;29814;29815	29814		4	9606
HLSVNDLPVGR	0	1	Unmodified	1205.6517	0.65166983	620	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	11.5	4.03							1	1							1	1	14.306	14.306	2	2.343E-06	7787	DP690-15	214.96	148.66			0.95949	1.1144	48.868	4	0	Median	233750000	133760000	99996000	6071	620	5693	12183;12184;12185;12186	29816;29817;29818;29819;29820;29821;29822;29823;29824;29825;29826;29827;29828;29829;29830;29831	29819		16	9606
HLVDEPQNLIK	1	0	Unmodified	1304.7089	0.70885036	37	CON__P02769			yes	yes	0	0	0	2.5	1.12	1	1	1	1													14.389	14.389	2	1.0398E-23	6994	DP690-2	214.05	144.42		+	NaN	NaN	NaN	0	0	Median	172810000	172810000	0	6072	37	5694	12187;12188;12189;12190	29832;29833;29834;29835;29836;29837;29838	29833		7	
HLVFPLLEFLSVK	1	0	Unmodified	1540.9017	0.90173651	920	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	13	0													2				24.099	24.099	2;3	0.0017278	20275	DP690-13	70.412	64.249			0.89507	1.0106	3.7739	2	0	Median	13785000	7386200	6398500	6073	920	5695	12191;12192	29839;29840;29841;29842;29843;29844;29845	29845		7	9606
HLVGVDSLIGPETQIGEK	1	0	Unmodified	1891.0051	0.005091963	2196	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	13	0													1				17.737	17.737	3	3.3183E-07	12495	DP690-13	141.1	141.1			0.8976	1.0383	NaN	1	0	Median	52670000	27205000	25465000	6074	2196	5696	12193	29846;29847;29848;29849	29847		4	9606
HLVQTHYYNYR	0	1	Unmodified	1492.7211	0.72114638	276	O75818	RPP40	Ribonuclease P protein subunit p40	yes	yes	0	0	0	8.67	3.77						2								1			11.525	11.525	3	4.603E-05	3991	DP690-14	164.65	153.28			0.91617	1.0948	NaN	1	0	Median	106850000	57926000	48921000	6075	276	5697	12194;12195;12196	29850;29851;29852;29853;29854	29851		5	9606
HLVSHYLDIASVPR	0	1	Unmodified	1605.8627	0.86272524	2339	Q9UHB4	NDOR1	NADPH-dependent diflavin oxidoreductase 1	yes	yes	0	0	0	4	0				1													15.544	15.544	3	0.016877	9271	DP690-4	81.789	54.847			NaN	NaN	NaN	0	0	Median	5789900	5789900	0	6076	2339	5698	12197	29855	29855		1	9606
HLVSPEALDLLDK	1	0	Unmodified	1448.7875	0.78749461	539	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	14	0														1			17.963	17.963	2	3.5368E-05	12874	DP690-14	128.88	110.27			0.71007	0.85868	NaN	1	0	Median	79588000	47804000	31785000	6077	539	5699	12198	29856;29857	29856		2	9606
HLYTLDGGDIINALCFSPNR	0	1	Unmodified	2275.1056	0.10555106	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	14	0														1			21.094	21.094	3	1.5119E-14	17057	DP690-14	190.8	190.8			0.7936	0.91918	NaN	1	0	Median	194160000	104990000	89162000	6078	1022	5700	12199	29858;29859;29860;29861;29862;29863;29864	29863		7	9606
HLYVAVGELLR	0	1	Unmodified	1268.7241	0.7241065	646	P32780	GTF2H1	General transcription factor IIH subunit 1	yes	yes	0	0	0	12	0												1					17.64	17.64	2	0.0471	12698	DP690-12	63.076	42.375			0.8519	1.0294	NaN	1	0	Median	16096000	9035500	7060800	6079	646	5701	12200	29865	29865		1	9606
HMISFLLGASR	0	1	Oxidation (M)	1246.6492	0.64922699	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	1	0	2	0		1															15.996	15.996	2	0.01218	8887	DP690-2	83.647	53.078			0.96525	1.0103	NaN	1	0	Median	6780600	3238700	3541900	6080	2418	5702	12201	29866;29867	29866	2844	2	9606
HMNLILCDCDEFRK	1	1	Oxidation (M)	1865.8223	0.82225869	492	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	1	1	15	0															1		14.046	14.046	3	1.6979E-05	7472	DP690-15	124.47	114.55			0.91201	1.0356	NaN	1	0	Median	48471000	24656000	23816000	6081	492	5703	12202	29868	29868	623	1	9606
HMQLYCDR	0	1	Unmodified	1121.4746	0.47463345	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	11	0											1						11.252	11.252	2	0.045426	3919	DP690-11	132.08	117.79			0.84098	0.96134	NaN	1	0	Median	207930000	111170000	96757000	6082	652	5704	12203	29869	29869		0	9606
HMYVFGDFK	1	0	Oxidation (M)	1158.5168	0.51681584	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	1	0	5	0					1												15.124	15.124	2	0.034729	8220	DP690-5	78.516	47.952			0.86287	0.85968	NaN	1	0	Median	74745000	38187000	36558000	6083	1989	5705	12204	29870	29870	2529	1	9606
HMYVFGDFKDVLIPGK	2	0	Oxidation (M)	1880.9495	0.94949134	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	1	1	8	3.56					1	1							1				18.489	18.489	3	9.9411E-05	12357	DP690-5	113.43	95.096			0.77512	0.80129	6.3411	3	0	Median	253340000	137260000	116080000	6084	1989	5706	12205;12206;12207	29871;29872;29873;29874;29875;29876;29877;29878;29879;29880	29875	2529	10	9606
HMYVFGDFKDVLIPGK	2	0	Unmodified	1864.9546	0.95457672	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	1	5	0					1												19.202	19.202	3	6.7419E-05	13290	DP690-5	119.77	95.235			0.76925	0.75045	NaN	1	0	Median	95715000	53956000	41758000	6085	1989	5706	12208	29881;29882;29883;29884;29885	29883		5	9606
HNALIQEVISQSR	0	1	Unmodified	1493.795	0.79503961	1228	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	3	0			1														16.286	16.286	3	0.027386	10450	DP690-3	75.764	39.764			NaN	NaN	NaN	0	0	Median	14591000	0	14591000	6086	1228	5707	12209	29886	29886		1	9606
HNDDEQYAWESSAGGSFTVR	0	1	Unmodified	2254.9516	0.95155284	416;409	P07900;Q14568;P08238	HSP90AA1;HSP90AA2P;HSP90AB1	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta	no	no	0	0	0	3	0			2														16.804	16.804	2;3	5.1883E-23	11025	DP690-3	266.44	247.61			0.89693	0.98222	2.1208	2	0	Median	109680000	58695000	50988000	6087	409;416	5708	12210;12211	29887;29888;29889;29890;29891;29892;29893;29894	29893		8	9606
HNEETGDNVGPLIIK	1	0	Unmodified	1634.8264	0.82639932	2270	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	0	0	0	16	0																1	14.729	14.729	2	2.6434E-07	8266	DP690-16	193.11	159.03			0.75349	0.8825	NaN	1	0	Median	8747700	4711400	4036300	6088	2270	5709	12212	29895;29896;29897;29898	29898		4	9606
HNELTGDNVGPLILK	1	0	Unmodified	1618.8679	0.8678702	1659	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	0	0	0	16	0																2	16.727	16.727	2;3	2.1084E-15	10669	DP690-16	231.74	148.1			0.73472	0.81993	3.8677	2	0	Median	150610000	84778000	65833000	6089	1659	5710	12213;12214	29899;29900;29901;29902;29903;29904	29902		6	9606
HNFLPEAFTTDFR	0	1	Unmodified	1593.7576	0.75759147	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	0	0	3	0			1														18.866	18.866	3	0.025396	13762	DP690-3	77.192	42.424			NaN	NaN	NaN	0	0	Median	15531000	0	15531000	6090	2061	5711	12215	29905;29906	29905		2	9606
HNFPALFGDVK	1	0	Unmodified	1243.635	0.63495714	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	0	0	6.5	0.5						1	1										16.818	16.818	2	1.0983E-06	10337	DP690-6	167.93	106.24			1.249	1.3428	NaN	1	0	Median	64249000	39126000	25123000	6091	1372	5712	12216;12217	29907;29908;29909;29910;29911;29912;29913;29914;29915	29907		9	9606
HNGICIYFSR	0	1	Unmodified	1265.5975	0.59752577	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10	0										1							15.321	15.321	2	0.053129	9811	DP690-10	63.216	27.86			1.0143	1.2107	NaN	1	0	Median	215050000	133620000	81424000	6092	272	5713	12218	29916	29916		1	9606
HNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSK	1	0	Unmodified	4471.168	0.16803456	57	CON__Q9U6Y5			yes	yes	0	0	0	6.68	2.27	2	1	2		12	14	17	16	2				1	1	1		25.317	25.317	3;4;5	7.169099999999999E-40	12389	DP690-7	166.13	146.38		+	0.23731	0.2699	184.78	14	0	Median	2737500000	899720000	1837799999.9999998	6093	57	5714	12219;12220;12221;12222;12223;12224;12225;12226;12227;12228;12229;12230;12231;12232;12233;12234;12235;12236;12237;12238;12239;12240;12241;12242;12243;12244;12245;12246;12247;12248;12249;12250;12251;12252;12253;12254;12255;12256;12257;12258;12259;12260;12261;12262;12263;12264;12265;12266;12267;12268;12269;12270;12271;12272;12273;12274;12275;12276;12277;12278;12279;12280;12281;12282;12283;12284;12285;12286;12287	29917;29918;29919;29920;29921;29922;29923;29924;29925;29926;29927;29928;29929;29930;29931;29932;29933;29934;29935;29936;29937;29938;29939;29940;29941;29942;29943;29944;29945;29946;29947;29948;29949;29950;29951;29952;29953;29954;29955;29956;29957;29958;29959;29960;29961;29962;29963;29964;29965;29966;29967;29968;29969;29970;29971;29972;29973;29974;29975;29976;29977;29978;29979;29980;29981;29982;29983;29984;29985;29986;29987;29988;29989;29990;29991;29992;29993;29994;29995;29996;29997;29998;29999;30000;30001;30002;30003;30004;30005;30006;30007;30008;30009;30010;30011;30012;30013;30014;30015;30016;30017;30018;30019;30020;30021;30022;30023;30024;30025;30026;30027;30028;30029;30030;30031;30032;30033;30034;30035;30036;30037;30038;30039;30040;30041;30042;30043;30044;30045;30046;30047;30048;30049;30050;30051;30052;30053;30054;30055;30056;30057;30058;30059;30060;30061;30062;30063;30064;30065;30066;30067;30068;30069;30070;30071;30072;30073;30074;30075;30076;30077;30078;30079	30021		161	
HNLQDFINIK	1	0	Unmodified	1240.6564	0.65642086	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	9	0									1								17.057	17.057	2	5.0309E-10	11173	DP690-9	176.38	88.905			NaN	NaN	NaN	0	0	Median	3646400	0	3646400	6094	763	5715	12288	30080;30081	30080		2	9606
HNMDIGTWDNK	1	0	Oxidation (M)	1345.5721	0.57209888	2053;2497	Q9BYJ9;Q9Y5A9	YTHDF1;YTHDF2	YTH domain-containing family protein 1;YTH domain-containing family protein 2	no	no	0	1	0	12	0												1					11.826	11.826	2	0.0035623	4508	DP690-12	96.756	76.765			0.97597	1.173	NaN	1	0	Median	23440000	11976000	11465000	6095	2053;2497	5716	12289	30082;30083	30083	2573;2934	2	9606
HNMDIGTWDNK	1	0	Unmodified	1329.5772	0.57718426	2053;2497	Q9BYJ9;Q9Y5A9	YTHDF1;YTHDF2	YTH domain-containing family protein 1;YTH domain-containing family protein 2	no	no	0	0	0	12	0												1					13.884	13.884	2	0.049678	7481	DP690-12	62.166	37.29			0.83894	0.9994	NaN	1	0	Median	44631000	25336000	19295000	6096	2053;2497	5716	12290	30084	30084		1	9606
HNMDIGTWDNKGPVAK	2	0	Oxidation (M)	1797.8468	0.84681718	2497	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	1	1	12	0												1					12	12	3	2.151E-06	4886	DP690-12	132.23	104.97			0.82481	0.95871	NaN	1	0	Median	33220000	17190000	16030000	6097	2497	5717	12291	30085;30086;30087	30087	2934	3	9606
HNMDIGTWDNKGPVPK	2	0	Oxidation (M)	1823.8625	0.86246725	2053	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	1	1	12	0												1					12.483	12.483	3	2.6028E-06	5492	DP690-12	129.29	109.2			0.71057	0.80623	NaN	1	0	Median	94527000	50208000	44319000	6098	2053	5718	12292	30088;30089	30089	2573	2	9606
HNNLDLVIIR	0	1	Unmodified	1205.6881	0.68805534	193	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	6	0						1											16.161	16.161	2	0.00053976	9529	DP690-6	117.53	89.127			0.90152	1.0325	NaN	1	0	Median	12992000	6481200	6510500	6099	193	5719	12293	30090;30091;30092;30093	30092		4	9606
HNPTVTGHQEQTYLQK	1	0	Unmodified	1879.9177	0.91767394	1520	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	11.3	0.471											2	1					10.626	10.626	3	0.0051213	3059	DP690-11	100.23	64.336			0.91346	1.0908	NaN	1	0	Median	87806000	16171000	71636000	6100	1520	5720	12294;12295;12296	30094;30095;30096	30095		3	9606
HNQLPLVIEFTEQTAPK	1	0	Unmodified	1964.0367	0.036726442	402	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	4	0				1													19.153	19.153	3	1.8039E-06	13647	DP690-4	130.01	114.8			1.0967	1.1902	NaN	1	0	Median	9259400	4492100	4767300	6101	402	5721	12297	30097	30097		1	9606
HNSEKPPEPVKPEVK	3	0	Unmodified	1713.905	0.90498399	2343	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	2	6	0						1											10.118	10.118	4	0.0045165	2527	DP690-6	79.804	63.704			0.30734	0.30722	NaN	1	0	Median	2636700	1271700	1365000	6102	2343	5722	12298	30098	30098		1	9606
HNSSGSILFLGR	0	1	Unmodified	1286.6731	0.67313356	628	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	6	0						1											15.809	15.809	2	0.00018587	9071	DP690-6	160.91	129.49			0.78034	0.88102	NaN	1	0	Median	20053000	10725000	9328000	6103	628	5723	12299	30099;30100;30101;30102	30101		4	9606
HNVEVLGILSDDVETDTVAPGENLK	1	0	Unmodified	2663.329	0.32900488	497	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	3	0			1														20.018	20.018	3	0.053152	15147	DP690-3	57.648	32.292			NaN	NaN	NaN	0	0	Median	0	0	0	6104	497	5724	12300	30103	30103		1	9606
HNVQTLDIISR	0	1	Unmodified	1294.6993	0.69934831	1121	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	4	0				1													14.208	14.208	2	3.8924E-05	7501	DP690-4	157.78	68.698			NaN	NaN	NaN	0	0	Median	13953000	13953000	0	6105	1121	5725	12301	30104	30104		1	9606
HPDYAILAAR	0	1	Unmodified	1125.5931	0.59309232	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	3	0			1														13.846	13.846	2	0.0017513	7102	DP690-3	103.83	49.222			0.70603	0.79254	NaN	1	0	Median	33791000	18507000	15285000	6106	574	5726	12302	30105;30106;30107	30106		3	9606
HPELADKNVPNLHVMK	2	0	Oxidation (M)	1856.9567	0.95670198	762	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	1	1	16	0																2	11.959	11.959	3;4	0.00042968	4605	DP690-16	92.269	69.414			0.81199	0.90711	4.8264	2	0	Median	335670000	182900000	152780000	6107	762	5727	12303;12304	30108;30109;30110;30111;30112;30113;30114;30115	30110	1133	8	9606
HPFPGPGLAIR	0	1	Unmodified	1160.6455	0.64546224	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	3.5	0.5			1	1													14.737	14.737	2	0.003883	8085	DP690-4	90.37	90.37			0.65763	0.73241	0.49777	2	0	Median	82415000	48607000	33808000	6108	813	5728	12305;12306	30116;30117;30118	30117		3	9606
HPGSFDVVHVK	1	0	Unmodified	1220.6302	0.63020611	986	P62701;P22090	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	yes	no	0	0	0	15	0															1		11.822	11.822	3	3.327E-05	4425	DP690-15	131.42	106.35			0.85122	0.92336	NaN	1	0	Median	235490000	128300000	107190000	6109	986	5729	12307	30119;30120;30121;30122	30121		4	9606
HPHDIIDDINSGAVECPAS	0	0	Unmodified	2045.9113	0.91126793	621	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	16	0																1	16.985	16.985	2	1.2845999999999998E-19	11043	DP690-16	196.67	135.32			NaN	NaN	NaN	0	0	Median	0	0	0	6110	621	5730	12308	30123;30124	30124		2	9606
HPHPHLSFMAIPPK	1	0	Oxidation (M)	1623.8344	0.834402	35	CON__P02668			yes	yes	0	1	0	4.55	1.78		2	1	3	2		3										12.466	12.466	3;4	0.00094682	4620	DP690-4	115.29	83.63		+	NaN	NaN	NaN	0	0	Median	355240000	355240000	0	6111	35	5731	12309;12310;12311;12312;12313;12314;12315;12316;12317;12318;12319	30125;30126;30127;30128;30129;30130;30131;30132;30133;30134;30135;30136;30137;30138;30139;30140;30141;30142;30143;30144;30145	30131	35	21	
HPHPHLSFMAIPPKK	2	0	Oxidation (M)	1751.9294	0.92936502	35	CON__P02668			yes	yes	0	1	1	4	2.16		1	1				1										10.622	10.622	4	0.004914	2754	DP690-2	89.44	50.407		+	NaN	NaN	NaN	0	0	Median	68629000	68629000	0	6112	35	5732	12320;12321;12322	30146;30147;30148	30146	35	3	
HPIKHQGLPQEVLNENLLR	1	1	Unmodified	2234.2284	0.22838381	32	CON__P02662			yes	yes	0	0	1	2	0		1															15.126	15.126	4	0.0083645	7973	DP690-2	86.005	43.946		+	NaN	NaN	NaN	0	0	Median	6373700	6373700	0	6113	32	5733	12323	30149;30150	30150		2	
HPNIITLHDIFENK	1	0	Unmodified	1689.8839	0.88385462	173	O43293	DAPK3	Death-associated protein kinase 3	yes	yes	0	0	0	13	0													1				17.303	17.303	3	2.1231E-05	11941	DP690-13	124.81	124.81			0.70984	0.82157	NaN	1	0	Median	47266000	27951000	19315000	6114	173	5734	12324	30151;30152;30153	30151		3	9606
HPNIVSLQDVLMQDSR	0	1	Oxidation (M)	1866.9258	0.92579578	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	1	0	9	3.56						1	1							1			18.041	18.041	3	3.718E-09	13063	DP690-14	183.23	157.69			0.85285	0.9951	16.802	3	0	Median	183140000	97998000	85146000	6115	391	5735	12325;12326;12327	30154;30155;30156;30157;30158;30159;30160;30161;30162;30163	30156	417	10	9606
HPNIVSLQDVLMQDSR	0	1	Unmodified	1850.9309	0.93088116	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	14	0														1			18.921	18.921	3	2.6914E-08	14140	DP690-14	176.42	176.42			0.85525	1.0127	NaN	1	0	Median	125030000	65774000	59257000	6116	391	5735	12328	30164;30165;30166;30167	30164		4	9606
HPPAPAEPSSDLASK	1	0	Unmodified	1502.7365	0.73652168	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	10.3	0.471										2	1						10.942	10.942	2	5.159E-07	3611	DP690-10	163.46	92.243			0.56388	0.69671	NaN	1	0	Median	32902000	28250000	4652800	6117	2303	5736	12329;12330;12331	30168;30169;30170;30171;30172;30173;30174	30169		7	9606
HPQPGAVELAAK	1	0	Unmodified	1216.6564	0.65642086	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2.5	0.5		1	1														10.839	10.839	2	1.3173E-07	2963	DP690-2	198.62	198.62			1.1124	1.1285	NaN	1	0	Median	40627000	20453000	20174000	6118	602	5737	12332;12333	30175;30176;30177;30178;30179;30180;30181	30177		7	9606
HPSAVTACNLDLENLVTDSNR	0	1	Unmodified	2325.1019	0.10192225	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	3	0			1														18.241	18.241	2	0.0049605	12909	DP690-3	109.55	72.2			NaN	NaN	NaN	0	0	Median	0	0	0	6119	2515	5738	12334	30182	30182		1	9606
HPSKPDPSGECNPDLR	1	1	Unmodified	1804.8162	0.81624534	1142	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	1	13.3	0.471													2	1			10.301	10.301	3;4	2.1695E-18	2524	DP690-13	227.91	199.19			0.57106	0.58312	27.699	3	0	Plateau	884470000	559590000	324880000	6120	1142	5739	12335;12336;12337	30183;30184;30185;30186;30187;30188;30189;30190;30191	30188		9	9606
HPSSPECLVSAQK	1	0	Unmodified	1438.6875	0.68746299	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							11.72	11.72	2	0.0050654	4731	DP690-10	99.53	36.731			0.5252	0.63682	NaN	1	0	Median	14629000	10020000	4608900	6121	1301	5740	12338	30192	30192		1	9606
HPYFYAPELLYYANK	1	0	Unmodified	1887.9196	0.91957142	37	CON__P02769			yes	yes	0	0	0	1.5	0.5	1	1															19.554	19.554	3	0.0040758	13018	DP690-2	98.337	77.51		+	NaN	NaN	NaN	0	0	Median	4098700	4098700	0	6122	37	5741	12339;12340	30193;30194;30195;30196	30196		4	
HQAFEAELHANADR	0	1	Unmodified	1607.7441	0.74406667	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	9.75	0.829									2	1	1						11.911	11.911	3	5.8833E-06	5065	DP690-10	132.08	111.84			0.77304	0.92301	NaN	1	0	Median	216610000	118140000	98471000	6123	1236	5742	12341;12342;12343;12344	30197;30198;30199;30200;30201;30202;30203;30204	30199		8	9606
HQAFEAELSANQSR	0	1	Unmodified	1586.7437	0.74373232	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							12.909	12.909	2	7.9955E-14	6500	DP690-10	216.68	189.13			0.79897	0.99924	NaN	1	0	Median	34604000	21361000	13243000	6124	1236	5743	12345	30205;30206;30207;30208	30206		4	9606
HQAQIDHYLGLANK	1	0	Unmodified	1606.8216	0.82158871	2188	Q9NQC3	RTN4	Reticulon-4	yes	yes	0	0	0	13	0													1				13.853	13.853	3	2.31E-05	7116	DP690-13	162.72	131.51			0.65365	0.74564	NaN	1	0	Median	108590000	68483000	40104000	6125	2188	5744	12346	30209;30210;30211	30211		3	9606
HQEGEIFDTEK	1	0	Unmodified	1331.5994	0.59935949	1098	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	14	0														1			12.214	12.214	2	0.00016084	5014	DP690-14	141.1	74.796			0.84391	1.0171	NaN	1	0	Median	27346000	13979000	13367000	6126	1098	5745	12347	30212;30213;30214;30215;30216	30213		5	9606
HQEGEIFDTEKEK	2	0	Unmodified	1588.7369	0.73691561	1098	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	14	0														1			10.811	10.811	3	4.7525E-05	3234	DP690-14	168.67	151.1			0.9674	1.0836	NaN	1	0	Median	59373000	29254000	30120000	6127	1098	5746	12348	30217;30218;30219;30220	30219		4	9606
HQEGEIFDTEKEKYEITEQR	2	1	Unmodified	2508.1769	0.17686133	1098	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	2	14	0														1			14.09	14.09	4	0.00012607	7642	DP690-14	114.56	105.54			0.92735	1.1162	NaN	1	0	Median	545850000	281140000	264710000	6128	1098	5747	12349	30221;30222	30222		2	9606
HQEVQDQDPVFQGSDSSGYQSDHKK	2	0	Unmodified	2845.2539	0.25394245	1386	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	yes	yes	0	0	1	13.5	0.5													1	1			11.534	11.534	4	4.2455E-07	4089	DP690-13	136.11	127.26			0.79751	0.90522	37.165	2	0	Median	26314000	12749000	13564000	6129	1386	5748	12350;12351	30223;30224;30225;30226;30227	30223		5	9606
HQGGWTDGGSGGGGGYQDGGYR	0	1	Unmodified	2124.8634	0.86340654	1680	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	0	12	0												1					12.721	12.721	3	3.3691E-15	5771	DP690-12	164.46	146.6			0.85962	1.0192	NaN	1	0	Median	45534000	26552000	18981000	6130	1680	5749	12352	30228;30229;30230;30231	30228		4	9606
HQGLPQEVLNENLLR	0	1	Unmodified	1758.9377	0.9376811	32	CON__P02662			yes	yes	0	0	0	4.29	2.34	2	2	2	2	1	2	1	2									17.44	17.44	2;3	3.6137E-74	11830	DP690-3	314.35	252.19		+	NaN	NaN	NaN	0	0	Median	1908999999.9999998	1908999999.9999998	0	6131	32	5750	12353;12354;12355;12356;12357;12358;12359;12360;12361;12362;12363;12364;12365;12366	30232;30233;30234;30235;30236;30237;30238;30239;30240;30241;30242;30243;30244;30245;30246;30247;30248;30249;30250;30251;30252;30253;30254;30255;30256;30257;30258;30259;30260	30242		29	
HQGVMVGMGQK	1	0	Unmodified	1170.5638	0.5637828	926;1023;1029;1408	P60709;P63261;P68032;P68133;P63267;P62736;Q562R1	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	0	11.7	1.7										1	1			1			10.71	10.71	2	3.9746E-16	2976	DP690-14	195.32	149.37			0.81173	1.0024	NaN	1	0	Median	182410000	94553000	87862000	6132	926;1023;1029;1408	5751	12367;12368;12369	30261;30262;30263;30264	30263		4	9606
HQGVMVGMGQK	1	0	2 Oxidation (M)	1202.5536	0.55361205	926;1023;1029;1408	P60709;P63261;P68032;P68133;P63267;P62736;Q562R1	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	2	0	14	0														1			9.6339	9.6339	2	0.0033071	1965	DP690-14	95.358	71.136			0.99822	1.1694	NaN	1	0	Median	1065600	539090	526510	6133	926;1023;1029;1408	5751	12370	30265;30266;30267	30265	1427;1428;2140;2141	3	9606
HQGVMVGMGQK	1	0	Oxidation (M)	1186.5587	0.55869743	926;1023;1029;1408	P60709;P63261;P68032;P68133;P63267;P62736;Q562R1	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	1	0	14	0														1			9.8944	9.8944	2	0.0012191	2171	DP690-14	108.98	68.096			0.87905	1.0355	NaN	1	0	Median	3474800	1697700	1777100	6134	926;1023;1029;1408	5751	12371	30268;30269;30270;30271;30272;30273	30272	1427;1428;2140;2141	6	9606
HQGVMVGMGQKDSYVGDEAQSK	2	0	2 Oxidation (M)	2382.058	0.058008524	926;1023;1029	P60709;P63261;P68032;P68133;P63267;P62736	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	2	1	14	0														2			10.71	10.71	3;4	9.5468E-07	3071	DP690-14	132.52	132.52			0.829	0.92693	0.4685	2	0	Median	262990000	144660000	118330000	6135	926;1023;1029	5752	12372;12373	30274;30275;30276;30277;30278;30279	30276	1427;1428	6	9606
HQGVMVGMGQKDSYVGDEAQSK	2	0	Oxidation (M)	2366.0631	0.063093902	926;1023;1029	P60709;P63261;P68032;P68133;P63267;P62736	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	1	1	14	0														3			11.726	11.726	3;4	3.8628E-10	3970	DP690-14	151.28	151.28			0.8405	0.94011	4.8978	3	0	Plateau	174630000	94501000	80132000	6136	926;1023;1029	5752	12374;12375;12376	30280;30281;30282;30283;30284;30285;30286;30287;30288;30289;30290;30291	30285	1427;1428	12	9606
HQGVMVGMGQKDSYVGDEAQSK	2	0	Unmodified	2350.0682	0.06817928	926;1023;1029	P60709;P63261;P68032;P68133;P63267;P62736	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	1	14	0														2			12.94	12.94	3;4	4.47E-16	5910	DP690-14	177.32	159.27			0.80824	0.90492	9.725	2	0	Median	139570000	73802000	65772000	6137	926;1023;1029	5752	12377;12378	30292;30293;30294;30295;30296	30294		5	9606
HQGVMVGMGQKDSYVGDEAQSKR	2	1	2 Oxidation (M)	2538.1591	0.15911955	926;1023;1029	P60709;P63261;P68032;P68133;P63267;P62736	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	2	2	15	1														1		1	10.411	10.411	4	1.8824E-10	2671	DP690-14	154.07	142.92			0.90906	1.0482	13.059	2	0	Median	124940000	74742000	50196000	6138	926;1023;1029	5753	12379;12380	30297;30298	30297	1427;1428	2	9606
HQGVMVGMGQKDSYVGDEAQSKR	2	1	Oxidation (M)	2522.1642	0.16420493	926;1023;1029	P60709;P63261;P68032;P68133;P63267;P62736	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	1	2	14	0														2			10.956	10.956	4	1.7864E-17	2939	DP690-14	177.02	156.06			0.90974	1.095	NaN	1	0	Median	102110000	83815000	18293000	6139	926;1023;1029	5753	12381;12382	30299;30300;30301;30302;30303;30304	30303	1427;1428	6	9606
HQILEQAVEDYAETVHQLSK	1	0	Unmodified	2337.1601	0.16008906	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							20.356	20.356	3	0.0091832	17198	DP690-10	66.045	42.999			NaN	NaN	NaN	0	0	Median	0	0	0	6140	1080	5754	12383	30305	30305		1	9606
HQQQLLASPGSSTVDNK	1	0	Unmodified	1808.9017	0.90168952	2067	Q9C0E2	XPO4	Exportin-4	yes	yes	0	0	0	3	0			1														11.995	11.995	3	0.0036328	4682	DP690-3	98.572	77.479			NaN	NaN	NaN	0	0	Median	3866200	0	3866200	6141	2067	5755	12384	30306	30306		1	9606
HQSFVLVGETGSGK	1	0	Unmodified	1444.731	0.73104237	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	11	0											2						13.692	13.692	2	0.00074637	7475	DP690-11	176.87	108.5			NaN	NaN	NaN	0	0	Median	0	0	0	6142	161	5756	12385;12386	30307;30308	30308		2	9606
HQVEQLSSSLK	1	0	Unmodified	1254.6568	0.65681479	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	9.5	0.5									1	1							11.329	11.329	2	2.2723E-06	4166	DP690-10	215.83	186.91			0.90612	1.118	NaN	1	0	Median	104370000	57357000	47014000	6143	1301	5757	12387;12388	30309;30310;30311;30312;30313;30314	30309		6	9606
HQYINEDEYEVNLK	1	0	Unmodified	1792.8268	0.82679325	1804	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	3	0			1														15.192	15.192	2	0.0067338	8907	DP690-3	119.39	86.387			NaN	NaN	NaN	0	0	Median	0	0	0	6144	1804	5758	12389	30315	30315		1	9606
HRLDLGEDYPSGK	1	1	Unmodified	1485.7212	0.72120596	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	1	3	0			1														12.262	12.262	3	0.00040415	5000	DP690-3	118.08	91.532			0.93402	1.0359	NaN	1	0	Median	24426000	12227000	12200000	6145	161	5759	12390	30316;30317;30318;30319	30317		4	9606
HRPDLIDFDK	1	1	Unmodified	1254.6357	0.63568542	1080	Q01082;P11277	SPTBN1;SPTB	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic	yes	no	0	0	1	10	0										1							13.639	13.639	3	0.0059505	7517	DP690-10	76.927	46.315			0.60618	0.74892	NaN	1	0	Median	101540000	63933000	37612000	6146	1080	5760	12391	30320;30321	30321		2	9606
HRPELIDYGK	1	1	Unmodified	1226.6408	0.6407708	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	1	7	4			1								1						11.418	11.418	3	0.0002823	4163	DP690-11	112.83	82.221			1.1941	1.3257	58.471	2	0	Median	240970000	128190000	112770000	6147	476	5761	12392;12393	30322;30323;30324;30325;30326	30324		5	9606
HRPIGIGVQGLADAFILMR	0	2	Oxidation (M)	2079.1411	0.14114871	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	1	1	3	0			2														19.488	19.488	3;4	9.7346E-07	14481	DP690-3	133.96	114.57			0.91446	0.94599	NaN	1	0	Median	17202000	7922300	9279300	6148	574	5762	12394;12395	30327;30328;30329	30328	760	3	9606
HSDELTSLLGYFPNKK	2	0	Unmodified	1847.9418	0.94176342	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	1	10	0										1							18.403	18.403	3	2.6072E-09	14429	DP690-10	173.33	158.13			0.78357	0.89415	NaN	1	0	Median	259420000	139600000	119820000	6149	1794	5763	12396	30330;30331	30330		2	9606
HSEAFEALQQK	1	0	Unmodified	1286.6255	0.62551466	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	12	0												1					12.42	12.42	2	2.576E-06	5366	DP690-12	209.73	166.86			0.83389	0.97862	NaN	1	0	Median	91625000	48805000	42820000	6150	1131	5764	12397	30332;30333	30332		2	9606
HSGNITFDEIVNIAR	0	1	Unmodified	1684.8533	0.85328277	621	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	16	0																1	19.109	19.109	3	0.012674	13676	DP690-16	84.874	59.508			NaN	NaN	NaN	0	0	Median	2011400	0	2011400	6151	621	5765	12398	30334;30335	30335		2	9606
HSGPNSADSANDGFVR	0	1	Unmodified	1629.7132	0.71316047	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	11.7	4.04					3	1			1				4	2	3	2	10.851	10.851	2;3	1.3666999999999999E-92	3215	DP690-14	306.44	270.94			0.79242	0.9039	10.526	11	0	Median	4334900000	2353900000	1980999999.9999998	6152	856	5766	12399;12400;12401;12402;12403;12404;12405;12406;12407;12408;12409;12410;12411;12412;12413;12414	30336;30337;30338;30339;30340;30341;30342;30343;30344;30345;30346;30347;30348;30349;30350;30351;30352;30353;30354;30355;30356;30357;30358;30359;30360;30361;30362;30363;30364;30365;30366;30367;30368;30369;30370;30371;30372;30373;30374;30375;30376;30377;30378;30379;30380;30381;30382;30383;30384;30385;30386	30352		51	9606
HSLALGSATEDKDSMETDDCSR	1	1	Oxidation (M)	2440.0118	0.011846192	1427	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	1	1	10	0										2							11.383	11.383	3;4	0.020551	4320	DP690-10	82.36	67.537			0.72752	0.90685	NaN	1	0	Median	37526000	20139000	17387000	6153	1427	5767	12415;12416	30387;30388	30388	2147	2	9606
HSLEEDEGSDFITENR	0	1	Unmodified	1876.8075	0.80751437	2222	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	12	0												1					15.178	15.178	2	0.0076276	9252	DP690-12	126.5	98.115			NaN	NaN	NaN	0	0	Median	0	0	0	6154	2222	5768	12417	30389	30389		1	9606
HSLHEEENNIFKR	1	1	Unmodified	1651.8067	0.80666693	1833	Q96CB9	NSUN4	5-methylcytosine rRNA methyltransferase NSUN4	yes	yes	0	0	1	14	0														1			11.978	11.978	4	1.4737E-05	4737	DP690-14	132.14	111.19			0.82843	0.98478	NaN	1	0	Median	87717000	46831000	40886000	6155	1833	5769	12418	30390;30391;30392	30392		3	9606
HSLLQTLYK	1	0	Unmodified	1101.6182	0.61824444	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					15.085	15.085	2	0.0014614	9266	DP690-12	120.87	120.87			0.82033	0.94287	NaN	1	0	Median	126330000	69000000	57333000	6156	750	5770	12419	30393;30394	30394		2	9606
HSLLQTLYKV	1	0	Unmodified	1200.6867	0.68665836	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	1	12	0												1					17.128	17.128	2	0.00019355	12007	DP690-12	156.92	134.68			0.92497	1.0625	NaN	1	0	Median	127500000	69043000	58456000	6157	750	5771	12420	30395;30396;30397	30396		3	9606
HSLSTLGSANCFLDSLYEGQDFDCNVSR	0	1	Unmodified	3191.3924	0.39242654	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	12	0												1					21.293	21.293	3	5.7775999999999994E-46	17525	DP690-12	225.13	217.03			0.81236	0.99004	NaN	1	0	Median	8401100	4160500	4240700	6158	1147	5772	12421	30398;30399;30400;30401;30402	30399		5	9606
HSNLSWQSQTR	0	1	Unmodified	1342.6378	0.63781068	2387	Q9ULH0	KIDINS220	Kinase D-interacting substrate of 220 kDa	yes	yes	0	0	0	9	0									1								11.014	11.014	2	0.055584	3376	DP690-9	85.958	54.884			NaN	NaN	NaN	0	0	Median	662820	0	662820	6159	2387	5773	12422	30403	30403		1	9606
HSNLVQLLGVIVEEK	1	0	Unmodified	1676.9461	0.94612052	719	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	5	0					2												21.499	21.499	2;3	8.1038E-06	16197	DP690-5	144.73	129.21			0.88127	0.87978	NaN	1	0	Median	42025000	22721000	19304000	6160	719	5774	12423;12424	30404;30405;30406;30407;30408	30405		5	9606
HSNVNLTIFTAR	0	1	Unmodified	1371.7259	0.72589741	2204	Q9NRW3;Q8IUX4;Q96AK3	APOBEC3C;APOBEC3F;APOBEC3D	DNA dC->dU-editing enzyme APOBEC-3C;DNA dC->dU-editing enzyme APOBEC-3F;DNA dC->dU-editing enzyme APOBEC-3D	yes	no	0	0	0	11.5	3.86							1	2							2	1	15.788	15.788	2;3	3.4244E-10	9765	DP690-15	218.55	218.55			0.71596	0.79545	13.893	5	0	Median	405810000	218150000	187670000	6161	2204	5775	12425;12426;12427;12428;12429;12430	30409;30410;30411;30412;30413;30414;30415;30416;30417;30418;30419;30420;30421;30422;30423;30424;30425;30426;30427;30428	30412		20	9606
HSNVVILTTSNITEK	1	0	Unmodified	1654.889	0.88899957	1342	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	5	0					1												14.484	14.484	3	0.019536	7403	DP690-5	79.346	42.17			NaN	NaN	NaN	0	0	Median	17099000	0	17099000	6162	1342	5776	12431	30429;30430	30429		2	9606
HSPEDPEKYSCFALFVK	2	0	Unmodified	2052.9615	0.96151259	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.5	0.5									1	1							17.176	17.176	3	7.7464E-05	11450	DP690-9	136.81	119.57			0.71638	0.8252	0.2367	2	0	Median	286810000	170770000	116030000	6163	1046	5777	12432;12433	30431;30432;30433;30434;30435;30436;30437	30437		7	9606
HSPTEDEESAKAEADAYIR	1	1	Unmodified	2117.9502	0.95015586	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	1	9.5	0.5									1	1							14.793	14.793	3	0.00016737	9256	DP690-10	130.27	98.646			NaN	NaN	NaN	0	0	Median	59586000	7266100	52320000	6164	763	5778	12434;12435	30438;30439;30440	30438		3	9606
HSQAVEELAEQLEQTK	1	0	Unmodified	1838.901	0.90102082	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		2															17.691	17.691	2;3	2.9961E-07	10921	DP690-2	144.08	129.32			1.3448	1.3383	17.375	2	0	Median	10392000	4741100	5650900	6165	668	5779	12436;12437	30441;30442;30443;30444;30445	30442		5	9606
HSQAVEELAEQLEQTKR	1	1	Unmodified	1995.0021	0.0021318501	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		1															16.293	16.293	3	0.081208	9299	DP690-2	30.593	7.3673			0.99548	0.97995	NaN	1	0	Median	43808000	17959000	25849000	6166	668	5780	12438	30446	30446		1	9606
HSQDLAFLSMLNDIAAVPATAMPFR	0	1	2 Oxidation (M)	2747.3411	0.34110666	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	2	0	2.5	0.5		1	1														21.921	21.921	3	2.0808E-10	15571	DP690-2	147.76	134.75			0.73671	0.79875	0.82497	2	0	Median	37935000	21409000	16526000	6167	789	5781	12439;12440	30447;30448;30449;30450;30451;30452;30453;30454;30455;30456	30450	1181;1182	10	9606
HSQEELLQR	0	1	Unmodified	1138.5731	0.57308516	1491	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	10	0										1							10.902	10.902	2	0.00085623	3553	DP690-10	128.6	72.48			1.0108	1.245	NaN	1	0	Median	143030000	71879000	71149000	6168	1491	5782	12441	30457;30458;30459;30460	30457		4	9606
HSQELPAILDDTTLSGSDR	0	1	Unmodified	2053.9916	0.99162674	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	6.5	3.5			1							1							17.879	17.879	3	0.00081596	12507	DP690-3	78.088	46.769			0.77787	0.88953	NaN	1	0	Median	40701000	8749900	31952000	6169	1311	5783	12442;12443	30461;30462	30462		2	9606
HSQFIGYPITLFVEK	1	0	Unmodified	1777.9403	0.94030686	409	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	yes	no	0	0	0	3	0			1														20.329	20.329	3	0.00039323	15394	DP690-3	95.073	74.706			1.2043	1.2699	NaN	1	0	Median	8257900	4186000	4071900	6170	409	5784	12444	30463;30464;30465	30463		3	9606
HSQFLGYPITLYLEK	1	0	Unmodified	1807.9509	0.95087155	1411	Q58FF8	HSP90AB2P	Putative heat shock protein HSP 90-beta 2	yes	yes	0	0	0	3	0			2														19.789	19.789	2;3	1.4132E-15	14808	DP690-3	256.13	0			0.94619	0.97931	1.8271	2	0	Median	169600000	84904000	84694000	6171	1411	5785	12445;12446	30466;30467;30468;30469;30470;30471;30472;30473;30474;30475;30476;30477;30478	30476		13	9606
HSQFLGYPITLYLEKER	1	1	Unmodified	2093.0946	0.094575672	1411	Q58FF8	HSP90AB2P	Putative heat shock protein HSP 90-beta 2	yes	yes	0	0	1	3	0			1														18.453	18.453	3	0.0012459	13198	DP690-3	78.225	0			0.94704	1.0503	NaN	1	0	Median	33972000	17107000	16866000	6172	1411	5786	12447	30479;30480	30479		2	9606
HSQPATPTPLQSR	0	1	Unmodified	1418.7266	0.72662569	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	12.8	0.748												2	2	1			10.521	10.521	2;3	1.1352E-05	2770	DP690-13	187.16	187.16			0.75641	0.92602	20.912	5	0	Median	377660000	218300000	159360000	6173	2194	5787	12448;12449;12450;12451;12452	30481;30482;30483;30484;30485;30486;30487;30488;30489;30490;30491;30492	30488		12	9606
HSSLAGCQIINYR	0	1	Unmodified	1517.7409	0.74089555	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	7.33	3.77		1								2							14.072	14.072	2;3	0.00017372	6598	DP690-2	108.72	73.818			0.84515	1.0155	19.43	3	0	Plateau	237220000	125740000	111480000	6174	1075	5788	12453;12454;12455	30493;30494;30495;30496;30497;30498;30499;30500;30501;30502;30503	30501		11	9606
HSSLITPLQAVAQR	0	1	Unmodified	1519.8471	0.84707518	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7	3.56		2							2	2							15.985	15.985	2;3	1.3814E-07	9695	DP690-9	234.9	234.9			0.78329	0.87265	7.8514	6	0	Median	872540000	492130000	380410000	6175	1046	5789	12456;12457;12458;12459;12460;12461	30504;30505;30506;30507;30508;30509;30510;30511;30512;30513;30514;30515;30516;30517;30518;30519;30520;30521;30522;30523;30524;30525;30526;30527;30528;30529;30530;30531	30523		28	9606
HSSSPLSPGGPTHLTKPTTTSSSER	1	1	Unmodified	2548.2518	0.25175761	2512	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	0	0	1	10	0										1							10.822	10.822	4	0.0079061	3476	DP690-10	70.767	44.621			NaN	NaN	NaN	0	0	Median	34760000	34760000	0	6176	2512	5790	12462	30532	30532		1	9606
HSSSTVFDLVEEYENICGSQVNILSK	1	0	Unmodified	2954.3968	0.39676687	912	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	11	0											1						23.25	23.25	3	8.7074E-06	20820	DP690-11	111.33	77.137			NaN	NaN	NaN	0	0	Median	0	0	0	6177	912	5791	12463	30533	30533		1	9606
HSTSGTDEGEDGDEPDDGSNDVVDLLPR	0	1	Unmodified	2927.2177	0.21767611	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							18.371	18.371	3	7.5048E-06	14268	DP690-10	113.13	87.983			NaN	NaN	NaN	0	0	Median	28213000	13937000	14277000	6178	1240	5792	12464	30534	30534		1	9606
HSVGVVIGR	0	1	Unmodified	922.53485	0.53484916	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	7	4			1								1						10.927	10.927	2	0.0029412	3316	DP690-3	108.09	76.152			1.0596	1.1919	33.954	2	0	Median	250200000	118760000	131440000	6179	1798	5793	12465;12466	30535;30536;30537;30538;30539;30540	30538		6	9606
HSVPLPTELSSEAK	1	0	Unmodified	1493.7726	0.77257283	1509	Q6UXV4	APOOL	MICOS complex subunit MIC27	yes	yes	0	0	0	15	0															1		14.199	14.199	2	0.00012005	7681	DP690-15	121.68	97.59			0.66966	0.78949	NaN	1	0	Median	13749000	7250000	6498800	6180	1509	5794	12467	30541;30542	30542		2	9606
HTAMVSWGGVSIPNSPFR	0	1	Oxidation (M)	1957.9469	0.94686558	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	10	0.707									1	2	1						18.513	18.513	2;3	3.208E-22	14566	DP690-10	222.81	204.08			0.69759	0.82912	7.1649	4	0	Median	892340000	522100000	370240000	6181	549	5795	12468;12469;12470;12471	30543;30544;30545;30546;30547;30548;30549;30550;30551;30552;30553;30554;30555;30556	30550	707	14	9606
HTAMVSWGGVSIPNSPFR	0	1	Unmodified	1941.952	0.95195096	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	0										1							19.186	19.186	3	0.00023361	15647	DP690-10	95.9	76.237			0.67788	0.76276	NaN	1	0	Median	463710000	269180000	194530000	6182	549	5795	12472	30557;30558;30559	30558		3	9606
HTENEEDKVSSSSFR	1	1	Unmodified	1750.7758	0.77582031	1178	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	1	4	0				1													10.608	10.608	3	0.00010294	2997	DP690-4	132.51	114.49			0.8302	0.94686	NaN	1	0	Median	61521000	33472000	28049000	6183	1178	5796	12473	30560;30561	30560		2	9606
HTGCCGDNDPIDVCEIGSK	1	0	Unmodified	2132.8561	0.85613759	1320	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	6	0						1											14.464	14.464	3	0.00046974	7508	DP690-6	84.581	78.153			0.92869	1.0635	NaN	1	0	Median	14311000	8289200	6021300	6184	1320	5797	12474	30562;30563	30563		2	9606
HTGFLEISQHSQEFINR	0	1	Unmodified	2041.997	0.99698689	1525	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	14	0														1			15.714	15.714	3	9.1212E-08	9853	DP690-14	149.6	149.6			0.93789	1.1235	NaN	1	0	Median	98124000	53187000	44938000	6185	1525	5798	12475	30564;30565	30564		2	9606
HTGPGILSMANAGPNTNGSQFFICTAK	1	0	Oxidation (M)	2806.3167	0.31668283	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	1	0	8	0								1									17.412	17.412	3	1.7093E-11	10778	DP690-8	150.22	130.31			0.74007	0.83061	NaN	1	0	Median	12675000	7223000	5452100	6186	1008	5799	12476	30566;30567;30568;30569	30569	1531	4	9606
HTGPGLLSMANQGQNTNNSQFVITLK	1	0	Oxidation (M)	2785.3817	0.38172592	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	1	0	9.5	0.5									1	1							17.418	17.418	3	1.9174E-16	11649	DP690-9	174.76	142.47			0.60807	0.76335	9.8593	2	0	Median	69235000	39849000	29386000	6187	808	5800	12477;12478	30570;30571;30572;30573;30574	30572	1214	5	9606
HTGPNSPDTANDGFVR	0	1	Unmodified	1683.7601	0.76011066	639;901	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	10.1	4.03					4				2				3	1	2		11.738	11.738	2;3	3.1109E-60	4149	DP690-5	263.74	221.4			0.71075	0.78957	10.768	9	0	Median	3947999999.9999995	2319800000	1628199999.9999998	6188	639;901	5801	12479;12480;12481;12482;12483;12484;12485;12486;12487;12488;12489;12490	30575;30576;30577;30578;30579;30580;30581;30582;30583;30584;30585;30586;30587;30588;30589;30590;30591;30592;30593;30594;30595;30596;30597;30598;30599;30600;30601;30602;30603;30604;30605;30606;30607;30608;30609;30610;30611;30612;30613	30603		38	9606
HTGYVIELQHVVK	1	0	Unmodified	1521.8304	0.83036248	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	7	4			1								1						14.292	14.292	3	9.2521E-05	7641	DP690-3	104.94	89.296			0.94314	1.0339	1.7528	2	0	Median	224990000	111270000	113710000	6189	770	5802	12491;12492	30614;30615;30616;30617	30617		4	9606
HTHVQDGEAGGITQQIGATNVPLEAINEQTK	1	0	Unmodified	3255.612	0.61199645	228	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	10	0										1							16.858	16.858	4	6.8822E-05	12346	DP690-10	119.69	119.69			0.97768	1.2074	NaN	1	0	Median	134420000	55936000	78479000	6190	228	5803	12493	30618	30618		0	9606
HTIAVVWGGVNIPHSPYR	0	1	Unmodified	2002.0537	0.053713911	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10.5	0.5										1	1						16.851	16.851	3	4.3205E-10	12221	DP690-10	152.01	152.01			0.72258	0.87655	NaN	1	0	Median	183120000	102830000	80288000	6191	250	5804	12494;12495	30619;30620;30621	30619		3	9606
HTIIISWGGVNVPK	1	0	Unmodified	1519.8511	0.85109792	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										1							17.512	17.512	3	0.004959	13179	DP690-10	71.976	71.976			0.86474	1.07	NaN	1	0	Median	67231000	37156000	30075000	6192	1270	5805	12496	30622;30623	30622		2	9606
HTLDELNPQK	1	0	Unmodified	1193.6041	0.60405094	1183	Q13131	PRKAA1	5'-AMP-activated protein kinase catalytic subunit alpha-1	yes	yes	0	0	0	9.33	3.77				1								2					12.069	12.069	2	0.00012733	4670	DP690-4	167.23	131.79			0.99319	1.0753	NaN	1	0	Median	28113000	4294800	23818000	6193	1183	5806	12497;12498;12499	30624;30625;30626;30627;30628	30628		5	9606
HTLDGAACLLNSNK	1	0	Unmodified	1512.7355	0.73547582	2459	Q9Y3A3	MOB4	MOB-like protein phocein	yes	yes	0	0	0	15	0															2		14.322	14.322	2;3	4.6645E-06	7897	DP690-15	179.94	156.56			0.95594	1.1267	6.0287	2	0	Median	47012000	23860000	23152000	6194	2459	5807	12500;12501	30629;30630;30631;30632;30633;30634;30635;30636;30637	30632		9	9606
HTLGHLLSLDSYR	0	1	Unmodified	1510.7892	0.78922595	1097	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	11	0											1						15.82	15.82	3	0.006443	10601	DP690-11	87.498	52.814			NaN	NaN	NaN	0	0	Median	57210000	57210000	0	6195	1097	5808	12502	30638;30639	30638		2	9606
HTLNPEETSSVVR	0	1	Unmodified	1467.7318	0.73177065	1427	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	10	0										1							12.11	12.11	2	0.0041385	5327	DP690-10	101.3	49.346			0.88182	1.1023	NaN	1	0	Median	32761000	18672000	14089000	6196	1427	5809	12503	30640;30641;30642	30640		3	9606
HTLNQIDSVK	1	0	Unmodified	1153.6091	0.60913632	41	CON__P12763			yes	yes	0	0	0	4	0				1													10.817	10.817	2	2.2335000000000002E-70	3272	DP690-4	285.16	149.39		+	NaN	NaN	NaN	0	0	Median	11343000	11343000	0	6197	41	5810	12504	30643;30644	30643		2	
HTMMFSATFPK	1	0	Oxidation (M)	1312.5944	0.59441423	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	1	0	11.5	0.5											1	1					14.7	14.7	2	0.00017753	8527	DP690-12	152.06	109.72			0.75154	0.90017	10.963	2	0	Median	162330000	89994000	72333000	6198	96	5811	12505;12506	30645;30646;30647;30648;30649;30650;30651	30649	105;106	7	9606
HTMMFSATFPK	1	0	2 Oxidation (M)	1328.5893	0.58932885	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	2	0	4	0				1													13.297	13.297	2	0.012871	6372	DP690-4	80.455	43.11			0.94279	1.0248	NaN	1	0	Median	23050000	13433000	9616900	6199	96	5811	12507	30652;30653	30653	105;106	2	9606
HTNYTMEHIR	0	1	Unmodified	1300.5983	0.59825406	476;186	P12814;P35609;O43707	ACTN1;ACTN2;ACTN4	Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-4	no	no	0	0	0	11	0											1						10.497	10.497	3	0.00025375	2846	DP690-11	110.54	77.452			0.82248	0.90239	NaN	1	0	Median	353350000	196310000	157040000	6200	476;186	5812	12508	30654;30655	30654		2	9606
HTTSIFDDFAHYEK	1	0	Unmodified	1709.7686	0.76855009	2053	Q9BYJ9;Q7Z739	YTHDF1;YTHDF3	YTH domain-containing family protein 1;YTH domain-containing family protein 3	yes	no	0	0	0	12	0												1					17.116	17.116	3	8.2214E-16	11918	DP690-12	231.69	216.93			2.3136	2.3893	NaN	1	0	Median	658420000	340890000	317530000	6201	2053	5813	12509	30656;30657;30658;30659;30660	30658		5	9606
HTTSIFDDFSHYEK	1	0	Unmodified	1725.7635	0.76346471	2497	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	8	4				1								1					16.752	16.752	3	3.8844E-06	11435	DP690-12	177.36	155.3			0.98686	1.0737	6.5822	2	0	Median	266710000	129120000	137600000	6202	2497	5814	12510;12511	30661;30662;30663;30664	30661		4	9606
HVAEVLEYTKDEQLESLFQR	1	1	Unmodified	2433.2176	0.21760393	382	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	1	10	4						1								1			18.783	18.783	4	0.0040521	14056	DP690-14	59.372	36.158			1.2162	1.4218	34.566	2	0	Median	67240000	36749000	30491000	6203	382	5815	12512;12513	30665;30666;30667	30665		3	9606
HVCIQSSLAK	1	0	Unmodified	1141.5914	0.59137776	1658	Q8N5C6	SRBD1	S1 RNA-binding domain-containing protein 1	yes	yes	0	0	0	11	0											1						10.966	10.966	2	0.02415	3487	DP690-11	88.37	56.499			0.73188	0.89132	NaN	1	0	Median	35915000	21413000	14502000	6204	1658	5816	12514	30668	30668		1	9606
HVDASFFLGK	1	0	Unmodified	1119.5713	0.57129425	2211	Q9NSP4	CENPM	Centromere protein M	yes	yes	0	0	0	8	0								1									16.56	16.56	2	0.00042361	9856	DP690-8	120.87	120.87			0.85928	0.97384	NaN	1	0	Median	9548300	5311200	4237100	6205	2211	5817	12515	30669;30670;30671;30672	30671		4	9606
HVDYVADQIVTK	1	0	Unmodified	1386.7143	0.71432967	468	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	10	0										1							13.675	13.675	2	0.00066052	7564	DP690-10	108.98	82.921			0.82992	1.0183	NaN	1	0	Median	32264000	19793000	12472000	6206	468	5818	12516	30673;30674;30675	30673		3	9606
HVEASGGSGPGDSGPSDPR	0	1	Unmodified	1764.7663	0.76631825	2417	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	10	0										1							10.355	10.355	3	0.00013113	2686	DP690-10	104.16	94.238			0.6376	0.78805	NaN	1	0	Median	117300000	70385000	46919000	6207	2417	5819	12517	30676;30677	30676		2	9606
HVFLTGPPGVGK	1	0	Unmodified	1207.6713	0.67134264	1990	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	0	13	3.56								1							1	1	13.888	13.888	2	5.4524E-05	7163	DP690-15	142.36	126.35			0.74251	0.85694	11.525	2	0	Median	92889000	54073000	38816000	6208	1990	5820	12518;12519;12520	30678;30679;30680;30681;30682;30683;30684;30685	30678		8	9606
HVGDLGNVTADK	1	0	Unmodified	1224.6099	0.6098646	355	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	0	0	0	8	0								1									11.455	11.455	2	0.012189	4112	DP690-8	103.08	62.089			NaN	NaN	NaN	0	0	Median	1523300	1523300	0	6209	355	5821	12521	30686	30686		1	9606
HVGMAVAGLLADAR	0	1	Oxidation (M)	1395.7293	0.72926823	587	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	1	0	7	0							1										15.899	15.899	3	0.00081417	9448	DP690-7	91.62	65.49			0.87979	1.0129	NaN	1	0	Median	16772000	8961300	7811000	6210	587	5822	12522	30687;30688;30689	30688	777	3	9606
HVGNQQYNVTYVVK	1	0	Unmodified	1647.8369	0.83690442	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	8.78	4.13		2							2	3	1					1	13.45	13.45	2;3	3.3322E-15	7179	DP690-10	246.26	246.26			0.962	1.041	8.2984	2	0	Median	295500000	166090000	129400000	6211	250	5823	12523;12524;12525;12526;12527;12528;12529;12530;12531	30690;30691;30692;30693;30694;30695;30696;30697;30698;30699;30700;30701;30702;30703	30690		14	9606
HVINFDLPSDIEEYVHR	0	1	Unmodified	2082.0171	0.017053633	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	11.3	0.471											2	1					19.764	19.764	3;4	5.365599999999999E-23	16209	DP690-11	239.19	239.19			0.84977	0.87799	5.7395	3	0	Plateau	908130000	481410000	426730000	6212	96	5824	12532;12533;12534	30704;30705;30706;30707;30708;30709;30710;30711;30712;30713	30706		10	9606
HVISYSLSPFEQR	0	1	Unmodified	1561.7889	0.7888916	122	O14949	UQCRQ	Cytochrome b-c1 complex subunit 8	yes	yes	0	0	0	16	0																2	16.47	16.47	2;3	5.0939E-09	10468	DP690-16	211.64	171.7			0.88329	1.0307	15.841	2	0	Median	20878000	12921000	7957000	6213	122	5825	12535;12536	30714;30715;30716;30717;30718;30719;30720;30721	30718		8	9606
HVITLHVSALTQTQAVEGEIDLAK	1	0	Unmodified	2572.3861	0.38606625	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	11	0											1						34.698	34.698	4	0.065459	27766	DP690-11	43.841	23.687			NaN	NaN	NaN	0	0	Median	325870	0	325870	6214	652	5826	12537	30722	30722		1	9606
HVLCAYCYEK	1	0	Unmodified	1341.5846	0.58457783	2048	Q9BYC8	MRPL32	39S ribosomal protein L32, mitochondrial	yes	yes	0	0	0	16	0																1	12.432	12.432	2	0.00023688	5218	DP690-16	126.24	92.498			0.99423	1.1647	NaN	1	0	Median	10539000	6375100	4164300	6215	2048	5827	12538	30723;30724;30725;30726	30726		4	9606
HVLDTLIQLAK	1	0	Unmodified	1249.7394	0.73942221	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															19.152	19.152	2	0.00018135	12654	DP690-2	123.75	100.02			1.1391	1.1427	NaN	1	0	Median	5346200	2639700	2706500	6216	1555	5828	12539	30727;30728;30729;30730	30727		4	9606
HVLVTLGEK	1	0	Unmodified	994.58113	0.58113065	925	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	0	13.3	3.77								1								2	12.229	12.229	2	4.0885E-06	5034	DP690-16	195.06	149.09			0.92653	1.0101	18.517	2	0	Median	211500000	115110000	96385000	6217	925	5829	12540;12541;12542	30731;30732;30733;30734;30735;30736;30737;30738;30739;30740;30741	30736		11	9606
HVMSNTGNWMHIR	0	1	2 Oxidation (M)	1613.7191	0.71911425	1700	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	0	2	0	14	0														2			10.642	10.642	3	0.0025194	3000	DP690-14	105.65	80.123			NaN	NaN	NaN	0	0	Median	0	0	0	6218	1700	5830	12543;12544	30742;30743	30743	2294;2295	2	9606
HVMSNTGNWMHIR	0	1	Unmodified	1581.7293	0.729285	1700	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	0	0	0	14	0														1			13.616	13.616	3	0.053675	6953	DP690-14	71.806	47.391			1.1218	1.3533	NaN	1	0	Median	63250000	28232000	35018000	6219	1700	5830	12545	30744	30744		0	9606
HVNTNPLCDLTPIFK	1	0	Unmodified	1767.8978	0.89779012	2379	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	12	0												2					19.397	19.397	2;3	2.2321E-26	14985	DP690-12	226.42	171.95			NaN	NaN	NaN	0	0	Median	15958000	15958000	0	6220	2379	5831	12546;12547	30745;30746	30745		2	9606
HVPCVEDEDFIQALDK	1	0	Unmodified	1913.8829	0.88292792	2157	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	10	0										1							18.428	18.428	3	0.048911	14577	DP690-10	31.42	11.756			0.81208	0.99813	NaN	1	0	Median	38927000	20441000	18486000	6221	2157	5832	12548	30747	30747		1	9606
HVPGGGNVQIQNK	1	0	Unmodified	1346.7055	0.70549632	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10	0										2							10.448	10.448	2;3	5.5601E-05	2858	DP690-10	120.77	97.059			0.7972	0.84385	0.41096	2	0	Median	2312400000	1290400000	1021899999.9999999	6222	604	5833	12549;12550	30748;30749;30750;30751;30752;30753;30754	30753		7	9606
HVPGGGNVQIQNKK	2	0	Unmodified	1474.8005	0.80045934	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	10	0										1							10.298	10.298	3	0.0016995	2603	DP690-10	78.705	58.598			0.7556	0.9359	NaN	1	0	Median	88743000	49587000	39156000	6223	604	5834	12551	30755;30756	30755		2	9606
HVPGSPFTVK	1	0	Unmodified	1067.5764	0.57637963	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	2	0		1															12.66	12.66	2	0.0078508	4889	DP690-2	86.67	64.091			1.0004	1.0051	NaN	1	0	Median	6924500	3399200	3525300	6224	1270	5835	12552	30757;30758	30758		2	9606
HVPVVYVDYPGPASLTQIYGTFNR	0	1	Unmodified	2692.3649	0.36493687	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								21.11	21.11	3	1.8388E-10	16131	DP690-9	154.42	139.37			0.49242	0.55612	53.608	2	0	Median	18919000	11221000	7698300	6225	1264	5836	12553;12554	30759;30760;30761;30762;30763	30761		5	9606
HVQLVMEAIGK	1	0	Oxidation (M)	1239.6645	0.66454271	1420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	1	0	10	0										1							12.945	12.945	2	0.016023	6591	DP690-10	79.148	48.536			1.2421	1.5238	NaN	1	0	Median	32027000	13991000	18036000	6226	1420	5837	12555	30764	30764	2144	1	9606
HVSIQEAESYAESVGAK	1	0	Unmodified	1803.8639	0.86390703	2383	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	15	0															1		17.204	17.204	2	0.0033103	11710	DP690-15	113.37	78.868			NaN	NaN	NaN	0	0	Median	3258600	0	3258600	6227	2383	5838	12556	30765	30765		1	9606
HVSSTSSSFLEV	0	0	Unmodified	1278.6092	0.6091959	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	11	0											1						16.7	16.7	2	0.010248	11979	DP690-11	104.44	71.247			NaN	NaN	NaN	0	0	Median	0	0	0	6228	1068	5839	12557	30766	30766		1	9606
HVSTAEETVQEEEREIYR	0	2	Unmodified	2204.0346	0.034554191	2294	Q9P0U3	SENP1	Sentrin-specific protease 1	yes	yes	0	0	1	12	0												1					15.505	15.505	3	0.00053754	9694	DP690-12	88.311	64.416			0.71391	0.80946	NaN	1	0	Median	44560000	23895000	20665000	6229	2294	5840	12558	30767;30768	30767		2	9606
HVVFIAQR	0	1	Unmodified	968.55558	0.55558461	962	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	15	0															1		11.564	11.564	2	2.219E-06	4122	DP690-15	166.66	102.09			NaN	NaN	NaN	0	0	Median	96804000	96804000	0	6230	962	5841	12559	30769;30770	30770		2	9606
HVVPLPDGK	1	0	Unmodified	960.53927	0.53926584	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								11.437	11.437	2	0.053592	3853	DP690-9	66.351	51.682			0.77573	0.9578	NaN	1	0	Median	3490500	1970400	1520200	6231	1453	5842	12560	30771	30771		1	9606
HVVQSISTQQEKETIAK	2	0	Unmodified	1925.0218	0.02180466	576	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	1	15	0															1		10.803	10.803	3	5.4098E-23	3269	DP690-15	233.14	202.1			0.95049	1.088	NaN	1	0	Median	23787000	12750000	11036000	6232	576	5843	12561	30772;30773;30774;30775;30776;30777;30778	30774		7	9606
HWELTAEGEEIAR	0	1	Unmodified	1539.7318	0.73177065	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	9.33	3.77				1								2					15.681	15.681	2;3	1.4008E-05	9893	DP690-12	177.16	131.1			0.99341	1.0901	4.3557	2	0	Median	732600000	359280000	373320000	6233	2434	5844	12562;12563;12564	30779;30780;30781;30782;30783;30784;30785;30786;30787	30781		9	9606
HWHEACFHCSQCR	0	1	Unmodified	1813.6984	0.69839558	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	10	4						1								1			10.306	10.306	4	1.2867E-08	2522	DP690-14	196.67	186.61			1.031	1.1845	NaN	1	0	Median	278720000	161940000	116780000	6234	1258	5845	12565;12566	30788;30789;30790;30791;30792;30793;30794	30790		7	9606
HWPFMVVNDAGRPK	1	1	Oxidation (M)	1668.8195	0.81948022	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	4	0				1													14.534	14.534	3	0.00053492	7780	DP690-4	94.688	74.934			1.6595	1.8927	NaN	1	0	Median	94590000	37079000	57511000	6235	463	5846	12567	30795;30796;30797	30797	543	3	9606
HWPFQVINDGDKPK	2	0	Unmodified	1679.842	0.8419898	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	12	0												1					15.343	15.343	3	0.00043024	9479	DP690-12	99.834	99.834			0.70706	0.80002	NaN	1	0	Median	106610000	57956000	48652000	6236	449	5847	12568	30798;30799;30800	30800		3	9606
HYCTVANPVSR	0	1	Unmodified	1302.6139	0.61390412	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														10.876	10.876	2	2.9771E-05	3266	DP690-3	186.25	149.06			0.62984	0.71354	NaN	1	0	Median	10425000	6420700	4004100	6237	1293	5848	12569	30801;30802;30803;30804	30801		4	9606
HYEDGYPGGSDNYGSLSR	0	1	Unmodified	1972.8187	0.81874776	216	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	11	0											2						13.893	13.893	2;3	3.2503E-05	7787	DP690-11	120.99	114.67			0.6057	0.73113	NaN	1	0	Median	92835000	58798000	34038000	6238	216	5849	12570;12571	30805;30806;30807;30808;30809	30805		5	9606
HYGGLTGLNK	1	0	Unmodified	1058.5509	0.55089316	530	P18669;P15259;Q8N0Y7	PGAM1;PGAM2;PGAM4	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4	yes	no	0	0	0	7	0							1										11.328	11.328	2	0.00051167	3934	DP690-7	118.33	65.548			1.136	1.2431	NaN	1	0	Median	12546000	5399600	7145900	6239	530	5850	12572	30810;30811	30810		2	9606
HYLDFINHYANLFHEK	1	0	Unmodified	2059.9904	0.99044495	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								19.249	19.249	4	0.0051212	13959	DP690-9	65.467	51.007			0.95209	1.1924	NaN	1	0	Median	21233000	10569000	10664000	6240	1264	5851	12573	30812;30813	30812		2	9606
HYPVFENPK	1	0	Unmodified	1129.5556	0.55564418	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	10.3	0.943									1		2						12.404	12.404	2	0.0022758	5260	DP690-11	111.95	81.383			0.67898	0.70998	9.8875	3	0	Plateau	777820000	450910000	326900000	6241	897	5852	12574;12575;12576	30814;30815;30816;30817;30818;30819;30820;30821;30822	30816		9	9606
HYQDVSCLQFTGDSSHFISGGK	1	0	Unmodified	2469.1019	0.10192225	2014	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	13	0													1				16.243	16.243	3	2.6226E-07	10467	DP690-13	141.79	141.79			0.92623	1.0718	NaN	1	0	Median	49192000	23917000	25275000	6242	2014	5853	12577	30823;30824	30823		2	9606
HYYEVSCHDQGLCR	0	1	Unmodified	1822.7515	0.75153659	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	7	4			1								1						11.769	11.769	3	2.31E-05	4698	DP690-11	124.51	120.45			0.85195	0.9629	4.0829	2	0	Median	211030000	112810000	98219000	6243	1768	5854	12578;12579	30825;30826;30827	30826		3	9606
IAAAGLDVTSPEPLPTNHPLLTLK	1	0	Unmodified	2467.3686	0.36862527	2320	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	0	6	0						1											19.01	19.01	3	6.8616E-07	12878	DP690-6	137.99	127.84			0.65329	0.74955	NaN	1	0	Median	10573000	6106100	4467200	6244	2320	5855	12580	30828;30829;30830;30831;30832	30830		5	9606
IAAEIAQAEEQAR	0	1	Unmodified	1398.7103	0.71030693	1808	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	13	0													1				14.695	14.695	2	8.7242E-11	8367	DP690-13	224.75	182.56			0.81555	0.95807	NaN	1	0	Median	135360000	73021000	62340000	6245	1808	5856	12581	30833;30834;30835;30836	30836		4	9606
IAAESSENVDCPENPK	1	0	Unmodified	1758.773	0.77304312	1384	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	3	0			1														12.011	12.011	2	6.2642E-18	4681	DP690-3	227.48	211.3			0.9817	1.0316	NaN	1	0	Median	6909600	4107100	2802600	6246	1384	5857	12582	30837;30838;30839;30840;30841	30841		5	9606
IAAGEVIQRPANAIK	1	1	Unmodified	1549.894	0.89402537	707	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	0	0	1	11	0											1						13.57	13.57	3	0.011519	7339	DP690-11	62.162	32.473			0.83759	1.0029	NaN	1	0	Median	71055000	35795000	35260000	6247	707	5858	12583	30842;30843	30842		2	9606
IAAGLPMAGIPFLTTDLTYR	0	1	Oxidation (M)	2136.1289	0.12891227	2081	Q9H061	TMEM126A	Transmembrane protein 126A	yes	yes	0	1	0	16	0																1	22.754	22.754	2	0.00023382	17594	DP690-16	112.42	112.42			0.68031	0.79217	NaN	1	0	Median	9634400	5595200	4039200	6248	2081	5859	12584	30844;30845;30846;30847	30847	2596	4	9606
IAALQAFADQLIAAGHYAK	1	0	Unmodified	1971.0578	0.057796236	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							22.223	22.223	3	6.4929E-23	19676	DP690-10	217.32	200.71			1.7876	2.2093	NaN	1	0	Median	60156000	16728000	43428000	6249	1236	5860	12585	30848;30849;30850;30851	30848		4	9606
IACHEEPVMDLDFDSQK	1	0	Oxidation (M)	2048.8819	0.88194164	2047	Q9BYB4	GNB1L	Guanine nucleotide-binding protein subunit beta-like protein 1	yes	yes	0	1	0	6	0						1											14.99	14.99	3	0.00011767	8123	DP690-6	110.57	100.65			0.67126	0.75755	NaN	1	0	Median	22915000	11619000	11296000	6250	2047	5861	12586	30852;30853;30854;30855	30854	2569	4	9606
IACLDFSLQK	1	0	Unmodified	1193.6114	0.6114445	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	8	4				1								1					17.928	17.928	2	0.0021447	12273	DP690-4	101.25	68.898			1.1346	1.2944	41.281	2	0	Median	67981000	33431000	34550000	6251	520	5862	12587;12588	30856;30857;30858;30859;30860;30861	30859		6	9606
IADFLNSFDMSCR	0	1	Oxidation (M)	1590.6807	0.68066306	1740	Q8WUW1	BRK1	Protein BRICK1	yes	yes	0	1	0	16	0																1	19.801	19.801	2	0.00059375	14445	DP690-16	111.63	92.387			0.78283	0.91612	NaN	1	0	Median	5860400	3004800	2855600	6252	1740	5863	12589	30862;30863	30862	2319	2	9606
IADGYEQAAR	0	1	Unmodified	1092.52	0.51998696	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	8	4				1								1					11.479	11.479	2	8.7552E-05	3986	DP690-4	159.28	85.021			1.1692	1.3276	31.97	2	0	Median	138530000	65092000	73441000	6253	779	5864	12590;12591	30864;30865;30866;30867;30868;30869;30870;30871;30872;30873	30871		10	9606
IAECSSQLAEEEEKAK	2	0	Unmodified	1820.8462	0.84620806	669	P35580	MYH10	Myosin-10	yes	yes	0	0	1	2	0		1															12.67	12.67	3	0.00025016	4996	DP690-2	103.14	65.139			1.1693	1.2139	NaN	1	0	Median	5252000	2478900	2773100	6254	669	5865	12592	30874;30875	30875		2	9606
IAEFTTNLTEEEEK	1	0	Unmodified	1652.7781	0.77811172	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	6	4		1								1							16.486	16.486	2	7.0314E-17	9453	DP690-2	279.62	214.47			1.103	1.2337	1.342	2	0	Median	86452000	42652000	43800000	6255	668	5866	12593;12594	30876;30877;30878;30879;30880;30881	30880		6	9606
IAEFTTNLTEEEEKSK	2	0	Unmodified	1867.9051	0.90510315	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	6.8	3.97		2							1	1	1						14.926	14.926	2;3	1.7516999999999998E-22	9400	DP690-10	246.5	217.08			0.85194	1.0314	24.263	5	0	Median	338990000	171180000	167810000	6256	668	5867	12595;12596;12597;12598;12599	30882;30883;30884;30885;30886;30887;30888;30889;30890;30891;30892;30893;30894;30895;30896	30882		15	9606
IAEGAQQGDPLSR	0	1	Unmodified	1340.6684	0.66844211	2357	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	yes	yes	0	0	0	6	0						1											12.926	12.926	2	5.7281E-05	5569	DP690-6	131.83	110.83			1.2595	1.4423	NaN	1	0	Median	5921800	2779200	3142600	6257	2357	5868	12600	30897;30898;30899;30900	30899		4	9606
IAEGVNSLLQMAGLLAR	0	1	Oxidation (M)	1770.9662	0.96620404	663	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	1	0	11.3	3.77						1								2			23.147	23.147	2	3.6998E-06	18533	DP690-14	138.89	108			1.0282	1.2474	3.7774	3	0	Median	24841000	11580000	13261000	6258	663	5869	12601;12602;12603	30901;30902;30903;30904;30905;30906	30901	934	6	9606
IAEGVNSLLQMAGLLAR	0	1	Unmodified	1754.9713	0.97128941	663	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	14	0														1			24.786	24.786	2	1.3435E-22	21350	DP690-14	252.96	199.39			0.8571	1.0546	NaN	1	0	Median	13705000	7470600	6234800	6259	663	5869	12604	30907;30908;30909;30910	30909		4	9606
IAEIEAEMAR	0	1	Oxidation (M)	1147.5543	0.55432356	2436	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	1	0	14	0														2			12.543	12.543	2	0.022838	5424	DP690-14	95.358	61.105			NaN	NaN	NaN	0	0	Median	0	0	0	6260	2436	5870	12605;12606	30911;30912	30911	2878	2	9606
IAELLSPGSVDPLTR	0	1	Unmodified	1566.8617	0.86172219	661	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	6	0						1											19.469	19.469	2	1.2815E-05	13434	DP690-6	142.76	121.19			0.63316	0.72609	NaN	1	0	Median	7593500	4742100	2851400	6261	661	5871	12607	30913;30914;30915;30916	30914		4	9606
IAEQEHTQEDLQQLR	0	1	Unmodified	1836.8966	0.89660415	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	10	0										1							13.392	13.392	2	0.024831	7147	DP690-10	101.35	48.336			NaN	NaN	NaN	0	0	Median	0	0	0	6262	2411	5872	12608	30917	30917		1	9606
IAEQVASFQEEK	1	0	Unmodified	1377.6776	0.67760981	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											1						14.2	14.2	2	3.0354E-10	8247	DP690-11	214.71	166.1			0.88217	0.99608	NaN	1	0	Median	210950000	104560000	106390000	6263	657	5873	12609	30918;30919;30920;30921	30921		4	9606
IAETDFEKR	1	1	Unmodified	1107.556	0.55603812	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	1	8	4				1								1					11.756	11.756	3	0.0023583	4310	DP690-4	113.66	25.481			NaN	NaN	NaN	0	0	Median	5529000	0	5529000	6264	1946	5874	12610;12611	30922;30923;30924;30925	30925		4	9606
IAEVDASVVR	0	1	Unmodified	1057.5768	0.57677356	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	11.6	4.08					1				1				1		1	1	13.905	13.905	2	8.8271E-05	7198	DP690-16	145.16	108			0.82988	0.78864	7.8466	5	0	Linear	5724300000	3088299999.9999995	2636000000	6265	637	5875	12612;12613;12614;12615;12616	30926;30927;30928;30929;30930;30931;30932;30933;30934;30935;30936;30937;30938;30939;30940;30941;30942;30943	30935		18	9606
IAEVDCTAER	0	1	Unmodified	1162.5288	0.52883709	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	5.5	0.5					1	1											11.251	11.251	2	0.00034232	3677	DP690-5	123.21	91.678			1.5512	1.6626	10.789	2	0	Median	86341000	32666000	53675000	6266	1675	5876	12617;12618	30944;30945;30946;30947;30948;30949;30950	30946		7	9606
IAEVGGVPYLLPLVNQK	1	0	Unmodified	1809.04	0.040020906	2094	Q9H0W9	C11orf54	Ester hydrolase C11orf54	yes	yes	0	0	0	6	0						1											21.629	21.629	2	0.00027165	15802	DP690-6	111.27	111.27			0.60892	0.67745	NaN	1	0	Median	3135300	2020100	1115300	6267	2094	5877	12619	30951;30952;30953;30954;30955	30951		5	9606
IAFAITAIK	1	0	Unmodified	946.58515	0.5851534	973	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	12	4								1								1	18.113	18.113	2	0.00064621	12437	DP690-16	143.89	62.696			0.9823	1.0692	5.2475	2	0	Median	262020000	128860000	133160000	6268	973	5878	12620;12621	30956;30957;30958;30959;30960;30961;30962;30963;30964;30965;30966	30959		11	9606
IAFTEWIEPPKR	1	1	Unmodified	1485.798	0.79799972	198	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	1	11	0											1						18.242	18.242	3	0.0005071	14112	DP690-11	97.163	58.203			0.6331	0.77859	NaN	1	0	Median	48521000	27464000	21056000	6269	198	5879	12622	30967;30968	30968		2	9606
IAGAGLLFVGGGIGGTILYAK	1	0	Unmodified	1947.1193	0.11933386	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	11	0											2						23.091	23.091	2	0.058535	20554	DP690-11	80.632	58.69			NaN	NaN	NaN	0	0	Median	3067800	3067800	0	6270	1375	5880	12623;12624	30969;30970	30970		2	9606
IAGAIGPCVSLNVK	1	0	Unmodified	1397.7701	0.77007041	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	7	4			1								1						16.937	16.937	2	2.5522E-05	12219	DP690-11	129.89	129.89			0.87112	0.99218	15.042	2	0	Median	55317000	25828000	29488000	6271	1333	5881	12625;12626	30971;30972;30973;30974;30975	30972		5	9606
IAGFDER	0	1	Unmodified	806.39227	0.39226725	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	10	0										1							13.396	13.396	2	0.012617	7126	DP690-10	123.99	61.65			NaN	NaN	NaN	0	0	Median	216950000	216950000	0	6272	1046	5882	12627	30976;30977	30977		2	9606
IAGPGLGSGVR	0	1	Unmodified	982.55598	0.55597854	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	7	3.56		1							1	1							13.044	13.044	2	0.00036648	5386	DP690-2	117.81	92.361			0.77328	0.85858	4.9975	3	0	Median	582390000	330370000	252030000	6273	250	5883	12628;12629;12630	30978;30979;30980;30981;30982;30983;30984;30985;30986	30982		9	9606
IAGYVTHLMK	1	0	Unmodified	1131.6111	0.61105057	425	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	16	0																1	14.072	14.072	3	0.0031299	7364	DP690-16	84.817	61.464			0.84981	0.99348	NaN	1	0	Median	5964400	2766900	3197500	6274	425	5884	12631	30987;30988	30987		2	9606
IAGYVTHLMK	1	0	Oxidation (M)	1147.606	0.6059652	425	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	1	0	12	4								2								2	12.105	12.105	2;3	0.017253	4767	DP690-8	77.533	37.66			1.1278	1.3014	NaN	1	0	Median	8526800	5426900	3100000	6275	425	5884	12632;12633;12634;12635	30989;30990;30991;30992	30992	490	3	9606
IAHIPLYFVNAQFPR	0	1	Unmodified	1784.9726	0.97261004	2199	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	12.5	0.5												1	1				19.622	19.622	3	4.0348E-07	15361	DP690-12	182.41	182.41			0.67242	0.79856	NaN	1	0	Median	56328000	32775000	23553000	6276	2199	5885	12636;12637	30993;30994;30995;30996	30993		4	9606
IAILTCPFEPPKPK	2	0	Unmodified	1609.8902	0.89018555	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	8	4				1								1					17.016	17.016	3	9.7477E-06	11161	DP690-4	136.93	106.45			0.70914	0.76809	26.215	2	0	Median	162070000	98870000	63203000	6277	779	5886	12638;12639	30997;30998;30999;31000;31001;31002;31003;31004;31005	31004		9	9606
IAIPGLAGAGNSVLLVSNLNPER	0	1	Unmodified	2274.2696	0.26957993	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	10.6	3				1					2			3	1	1			22.382	22.382	2;3	1.6855000000000002E-29	18671	DP690-12	215.37	215.37			0.67317	0.80119	8.3843	6	0	Median	273180000	157430000	115750000	6278	595	5887	12640;12641;12642;12643;12644;12645;12646;12647	31006;31007;31008;31009;31010;31011;31012;31013;31014;31015;31016;31017;31018;31019;31020;31021;31022;31023;31024;31025;31026;31027;31028;31029;31030;31031;31032;31033;31034;31035	31008		30	9606
IAIWTTECENR	0	1	Unmodified	1391.6503	0.65034921	394	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	15	0															1		16.233	16.233	2	0.00015441	10381	DP690-15	169.09	146.45			0.91342	1.0569	NaN	1	0	Median	14457000	7646000	6810500	6279	394	5888	12648	31036;31037	31036		2	9606
IAIYELLFK	1	0	Unmodified	1108.6532	0.65323296	762	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	12	4								1								1	22.624	22.624	2	0.001342	17473	DP690-16	122.18	106.53			0.95531	1.0796	2.4877	2	0	Median	100410000	51233000	49181000	6280	762	5889	12649;12650	31038;31039;31040;31041;31042;31043;31044;31045;31046;31047;31048;31049	31039		12	9606
IAKEEIFGPVQPLFK	2	0	Unmodified	1714.9658	0.96579333	629	P30837	ALDH1B1	Aldehyde dehydrogenase X, mitochondrial	yes	yes	0	0	1	4	0				1													18.708	18.708	3	0.009377	13265	DP690-4	68.168	68.168			0.69648	0.71504	NaN	1	0	Median	5479600	3180000	2299700	6281	629	5890	12651	31050	31050		1	9606
IALLPLLQAETDRR	0	2	Unmodified	1607.9359	0.93589019	2290	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	yes	yes	0	0	1	16	0																1	19.871	19.871	3	0.026706	14733	DP690-16	52.79	35.656			0.69377	0.73298	NaN	1	0	Median	6214800	3799400	2415400	6282	2290	5891	12652	31051	31051		1	9606
IALLQSLLDDANLR	0	1	Unmodified	1553.8777	0.8777066	1577	Q86VS8	HOOK3	Protein Hook homolog 3	yes	yes	0	0	0	11	0											1						23.689	23.689	2	0.015212	21337	DP690-11	106.01	37.456			NaN	NaN	NaN	0	0	Median	0	0	0	6283	1577	5892	12653	31052	31052		1	9606
IALTDNALIAR	0	1	Unmodified	1169.6768	0.67682195	525	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	15	0															1		17.176	17.176	2	2.9331E-05	11585	DP690-15	186.41	94.511			0.94977	1.0047	NaN	1	0	Median	310730000	153770000	156950000	6284	525	5893	12654	31053;31054;31055;31056	31056		4	9606
IALYGLGSIPDER	0	1	Unmodified	1402.7456	0.7456298	815	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	11	0											1						19.261	19.261	2	0.005902	15732	DP690-11	121.6	50.684			NaN	NaN	NaN	0	0	Median	29762000	29762000	0	6285	815	5894	12655	31057	31057		1	9606
IAMENDDGRTEEEKHSAVQR	1	2	Oxidation (M)	2330.0557	0.055700338	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	1	2	13	0													2				10.161	10.161	4;5	0.022777	2339	DP690-13	50.178	31.418			0.88551	1.0214	2.0718	2	0	Median	43265000	22771000	20494000	6286	1755	5895	12656;12657	31058;31059;31060	31060	2326	3	9606
IANLQTDLSDGLR	0	1	Unmodified	1414.7416	0.74160705	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	11.5	3.64		1							1	3	1		2	1	2	1	17.659	17.659	2	3.574E-11	12395	DP690-10	182.64	124.05			0.87501	0.99271	17.212	6	0	Median	945140000	533300000	411840000	6287	549	5896	12658;12659;12660;12661;12662;12663;12664;12665;12666;12667;12668;12669	31061;31062;31063;31064;31065;31066;31067;31068;31069;31070;31071;31072;31073;31074;31075;31076;31077;31078;31079;31080;31081;31082;31083;31084;31085;31086;31087	31061		27	9606
IANPDQLLTQDVEK	1	0	Unmodified	1582.8203	0.82025131	606	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	12	0												1					17.742	17.742	2	0.00018893	12833	DP690-12	117.95	81.421			1.4745	1.7589	NaN	1	0	Median	63238000	28394000	34844000	6288	606	5897	12670	31088;31089	31088		2	9606
IANPVEGSSGR	0	1	Unmodified	1085.5465	0.54653606	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	10	4						1								1			11.376	11.376	2	0.00010139	3829	DP690-14	142.98	80.323			0.82021	0.88716	8.236	2	0	Median	663440000	353960000	309480000	6289	1325	5898	12671;12672	31090;31091;31092;31093;31094;31095;31096;31097;31098;31099;31100;31101	31093		12	9606
IANPVEGSTDR	0	1	Unmodified	1157.5677	0.56766543	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	12	3.54						1							1	1	1		12.08	12.08	2	9.5485E-05	4539	DP690-6	139.43	68.514			0.80509	0.89081	16.853	4	0	Median	1314100000	694500000	619590000	6290	1326	5899	12673;12674;12675;12676	31102;31103;31104;31105;31106;31107;31108;31109;31110;31111;31112;31113;31114;31115	31115		14	9606
IAPAEGPDVSER	0	1	Unmodified	1239.6095	0.60953025	2523	Q9Y6M1	IGF2BP2	Insulin-like growth factor 2 mRNA-binding protein 2	yes	yes	0	0	0	8	4				1								1					12.19	12.19	2	0.0014352	4849	DP690-4	100.82	70.133			0.86145	1.0116	16.218	2	0	Median	57905000	28209000	29697000	6291	2523	5900	12677;12678	31116;31117;31118;31119	31119		4	9606
IAPLAEGALPYNLAELQR	0	1	Unmodified	1938.0575	0.057461885	274	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	12	0												1					20.879	20.879	2	7.6425E-13	16954	DP690-12	179.83	179.83			0.69269	0.83814	NaN	1	0	Median	15475000	8919100	6555700	6292	274	5901	12679	31120;31121;31122;31123	31121		4	9606
IAPLEEGTLPFNLAEAQR	0	1	Unmodified	1968.0316	0.031641065	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	12.5	0.5												1	1				20.802	20.802	2	3.1829E-31	16830	DP690-12	258.23	228.02			0.7062	0.83285	NaN	1	0	Median	83021000	47948000	35072000	6293	2359	5902	12680;12681	31124;31125;31126;31127;31128	31124		5	9606
IAPVENDNSYDELKR	1	1	Unmodified	1761.8533	0.85334235	1302	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	1	2	0		1															13.558	13.558	3	4.5508E-06	6027	DP690-2	134.04	110.23			0.85431	0.84098	NaN	1	0	Median	9256200	5623100	3633100	6294	1302	5903	12682	31129;31130	31129		2	9606
IAPVHIDSEAISALVK	1	0	Unmodified	1661.9352	0.93522148	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10	0										2							18.692	18.692	3	3.255E-05	14972	DP690-10	122.63	105.49			0.79982	0.94844	NaN	1	0	Median	256390000	111900000	144490000	6295	1377	5904	12683;12684	31131;31132;31133;31134	31132		4	9606
IAPYSVEIK	1	0	Unmodified	1018.5699	0.56989727	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							15.159	15.159	2	0.0016554	8600	DP690-9	118.74	67.408			0.78655	0.86968	6.6203	2	0	Median	615180000	345290000	269890000	6296	1046	5905	12685;12686	31135;31136;31137;31138;31139;31140;31141;31142	31141		8	9606
IAQLASITGPQSR	0	1	Unmodified	1340.7412	0.74121312	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	9.5	0.5									1	1							15.188	15.188	2	0.00019948	8711	DP690-9	159.09	114.11			0.74485	0.93268	0.66283	2	0	Median	58976000	36368000	22608000	6297	1891	5906	12687;12688	31143;31144;31145;31146	31145		4	9606
IAQLEEELEEEQGNTELINDR	0	1	Unmodified	2471.1664	0.16635622	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	6	4		1								1							19.388	19.388	2	3.4698E-57	15863	DP690-10	270.26	174.99			1.0406	1.0874	NaN	1	0	Median	11280000	5634400	5645800	6298	668	5907	12689;12690	31147;31148;31149;31150;31151	31147		5	9606
IAQLEEQLDNETK	1	0	Unmodified	1529.7573	0.7573167	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	7.67	4.03		1								1	1						15.582	15.582	2	1.5083E-08	8379	DP690-2	242.45	183.82			0.87533	0.97988	23.922	2	0	Median	183920000	93418000	90499000	6299	668	5908	12691;12692;12693	31152;31153;31154;31155;31156;31157;31158;31159	31159		8	9606
IAQLEEQLDNETKER	1	1	Unmodified	1814.901	0.90102082	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	4.67	3.77		2								1							14.76	14.76	2;3	3.9075E-15	7414	DP690-2	225.13	194.64			1.1589	1.1408	7.5888	2	0	Median	145230000	118330000	26898000	6300	668	5909	12694;12695;12696	31160;31161;31162;31163;31164;31165;31166;31167;31168	31164		9	9606
IAQLQEALLHCGK	1	0	Unmodified	1479.7868	0.78678311	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								15.532	15.532	3	0.0058511	9264	DP690-9	71.888	71.888			0.70136	0.88339	NaN	1	0	Median	19526000	10675000	8851200	6301	2411	5910	12697	31169;31170	31169		2	9606
IAQPGDHVSVTGIFLPILR	0	1	Unmodified	2032.1469	0.14694559	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	7	4			1								1						21.122	21.122	3	5.5967E-10	18120	DP690-11	148.36	139.6			0.63031	0.73261	8.345	2	0	Median	168930000	102150000	66787000	6302	653	5911	12698;12699	31171;31172;31173;31174;31175;31176	31171		6	9606
IAQSDYIPTQQDVLR	0	1	Unmodified	1745.8948	0.89481323	377	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	0	14	0														1			17.059	17.059	2	6.3343E-16	11746	DP690-14	230.81	230.81			0.73558	0.87177	NaN	1	0	Median	122820000	70622000	52196000	6303	377	5912	12700	31177;31178;31179;31180	31179		4	9606
IASDEEIQGTK	1	0	Unmodified	1189.5826	0.5826468	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	8.75	3.34			1							1	2						11.147	11.147	2	2.6029E-16	3736	DP690-11	200.56	138.46			0.67736	0.74051	0.55341	2	0	Median	469150000	367790000	101360000	6304	1758	5913	12701;12702;12703;12704	31181;31182;31183;31184;31185;31186;31187	31185		7	9606
IASDEEIQGTKDAVIQDLER	1	1	Unmodified	2229.1125	0.11247016	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	11	0											1						18.734	18.734	3	0.00025569	14788	DP690-11	141.6	93.55			NaN	NaN	NaN	0	0	Median	0	0	0	6305	1758	5914	12705	31188	31188		1	9606
IASLEVENQSLR	0	1	Unmodified	1357.7201	0.72014333	617	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	12.8	3.96						1								1	1	1	15.282	15.282	2	3.0604E-09	8469	DP690-6	242.39	158.74			0.95843	1.0629	30.408	4	0	Median	625240000	311770000	313470000	6306	617	5915	12706;12707;12708;12709	31189;31190;31191;31192;31193;31194;31195;31196;31197;31198;31199;31200;31201;31202;31203;31204;31205;31206;31207	31207		19	9606
IASLLGLLSK	1	0	Unmodified	1013.6485	0.64848194	1874	Q96HW7	INTS4	Integrator complex subunit 4	yes	yes	0	0	0	11	0											1						21.221	21.221	2	0.0045667	18296	DP690-11	91.265	40.073			0.7986	0.97454	NaN	1	0	Median	26944000	15049000	11895000	6307	1874	5916	12710	31208;31209;31210	31208		3	9606
IASPEGQDYLK	1	0	Unmodified	1219.6085	0.60846762	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	12.5	0.5												1	1				14.268	14.268	2	0.00014111	7943	DP690-12	138.08	66.737			0.83463	0.93132	0.57149	2	0	Median	402130000	226470000	175660000	6308	2475	5917	12711;12712	31211;31212;31213;31214;31215;31216	31214		6	9606
IASSVTAGVASSLSEK	1	0	Unmodified	1505.7937	0.7937022	1705	Q8NHV4	NEDD1	Protein NEDD1	yes	yes	0	0	0	11	0											1						15.697	15.697	2	0.073326	10400	DP690-11	83.877	38.518			NaN	NaN	NaN	0	0	Median	0	0	0	6309	1705	5918	12713	31217	31217		1	9606
IASVVGILGHLASR	0	1	Unmodified	1391.8249	0.82488317	1496	Q6P9B9	INTS5	Integrator complex subunit 5	yes	yes	0	0	0	11	0											1						19.431	19.431	3	3.4767E-05	15751	DP690-11	122.66	122.66			0.84285	1.0051	NaN	1	0	Median	40081000	22378000	17703000	6310	1496	5919	12714	31218;31219;31220;31221;31222	31219		5	9606
IASWADLVNAHVVPGSGVVK	1	0	Unmodified	2018.0949	0.094910023	465	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	5	0					1												19.715	19.715	3	0.033222	14068	DP690-5	44.468	44.468			0.75635	0.75628	NaN	1	0	Median	20270000	11520000	8750400	6311	465	5920	12715	31223	31223		1	9606
IATGHGQQGVTQVVLK	1	0	Unmodified	1634.9104	0.91040372	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	10.7	0.471										1	2						12.8	12.8	2;3	2.2055E-06	6181	DP690-11	130.61	80.511			0.85577	1.0093	10.646	2	0	Median	352070000	193390000	158680000	6312	837	5921	12716;12717;12718	31224;31225;31226;31227;31228;31229;31230	31229		7	9606
IATTTASAATAAAIGATPR	0	1	Unmodified	1714.9214	0.92136233	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							16.015	16.015	2	3.8978E-10	11042	DP690-10	158.81	118.8			0.69013	0.86258	NaN	1	0	Median	32078000	19319000	12759000	6313	1301	5922	12719	31231;31232	31231		2	9606
IAVAAQNCYK	1	0	Unmodified	1136.5648	0.56482866	919	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	7	0							3										11.718	11.718	2	0.0086676	4354	DP690-7	120.62	73.539			NaN	NaN	NaN	0	0	Median	0	0	0	6314	919	5923	12720;12721;12722	31233;31234;31235	31233		3	9606
IAVAVLEETTR	0	1	Unmodified	1200.6714	0.67140222	808;16;446	P49792;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	0	9.5	0.5									1	1							16.528	16.528	2	0.00037537	10503	DP690-9	117.53	57.407			0.91611	1.128	12.745	2	0	Median	172080000	81184000	90893000	6315	808;16;446	5924	12723;12724	31236;31237;31238;31239;31240;31241;31242	31239		7	9606
IAVDEVHCCSQWGHDFRPDYK	1	1	Unmodified	2618.1431	0.14307556	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	11.5	0.5											1	1					14.95	14.95	5	0.00022275	8889	DP690-12	92.679	72.958			0.82239	0.87301	9.591	2	0	Median	767470000	394010000	373460000	6316	751	5925	12725;12726	31243;31244;31245;31246;31247;31248;31249	31248		7	9606
IAVEPVNPSELPK	1	0	Unmodified	1391.766	0.76603089	1314	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	11	0											1						16.616	16.616	2	0.0006942	11714	DP690-11	118.9	94.816			0.51355	0.62204	NaN	1	0	Median	66940000	47404000	19536000	6317	1314	5926	12727	31250;31251	31250		2	9606
IAVYSCPFDGMITETK	1	0	Oxidation (M)	1846.8481	0.84812231	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	4	0				1													17.63	17.63	2	0.00053104	11859	DP690-4	110.64	110.64			1.5332	1.6718	NaN	1	0	Median	19969000	8333500	11636000	6318	826	5927	12728	31252;31253;31254	31252	1244	3	9606
IAWPPPTELGSSGSALEEGIK	1	0	Unmodified	2138.0895	0.089549874	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	11	0											1						19.992	19.992	2	1.3764E-14	16449	DP690-11	163.62	143.49			0.77575	0.94183	NaN	1	0	Median	79423000	46105000	33319000	6319	2340	5928	12729	31255;31256;31257;31258;31259;31260	31258		6	9606
IAYQLAVEAESEQK	1	0	Unmodified	1577.7937	0.7937022	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	3	0			1														16.257	16.257	2	1.3955E-06	10300	DP690-3	191.33	191.33			2.1878	2.3542	NaN	1	0	Median	18495000	6147800	12347000	6320	670	5929	12730	31261;31262;31263;31264	31262		4	9606
ICANHYITPMMELKPNAGSDR	1	1	2 Oxidation (M)	2449.1188	0.11883464	741	P43487	RANBP1	Ran-specific GTPase-activating protein	yes	yes	0	2	1	7	0							1										12.998	12.998	4	0.030152	5920	DP690-7	41.115	24.397			0.84635	0.89203	NaN	1	0	Median	23896000	11713000	12183000	6321	741	5930	12731	31265	31265	1092;1093	1	9606
ICDECNYGSYQGR	0	1	Unmodified	1620.6297	0.62969012	1536	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	0	13.3	3.77								1								2	12.961	12.961	2	2.7373E-10	5702	DP690-8	232.88	217.68			0.86253	0.93285	6.2571	2	0	Median	672580000	350590000	321990000	6322	1536	5931	12732;12733;12734	31266;31267;31268;31269;31270;31271;31272;31273;31274	31272		9	9606
ICDPGLTSFEPEALGNLVEGMDFHK	1	0	Oxidation (M)	2791.2833	0.28331701	1223	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	1	0	12	0												1					21.543	21.543	3	0.00030299	17779	DP690-12	87.748	68.844			0.66673	0.80631	NaN	1	0	Median	14215000	8226900	5988000	6323	1223	5932	12735	31275;31276;31277;31278	31277	1869	4	9606
ICDQISDAVLDAHLQQDPDAK	1	0	Unmodified	2351.1063	0.10633893	634	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	5	0					1												17.474	17.474	3	0.0013826	11153	DP690-5	72.145	54.999			0.78204	0.77915	NaN	1	0	Median	74176000	42564000	31612000	6324	634	5933	12736	31279;31280	31279		2	9606
ICDQWDNLGALTQK	1	0	Unmodified	1660.7879	0.78790532	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	11	0											1						18.855	18.855	2	0.0030684	14963	DP690-11	130.1	93.427			NaN	NaN	NaN	0	0	Median	0	0	0	6325	476	5934	12737	31281	31281		1	9606
ICDYLFNVSDSSALNLAK	1	0	Unmodified	2028.9826	0.98264196	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						21.137	21.137	2	1.4303E-16	18090	DP690-11	196.84	170.19			0.81266	0.98327	NaN	1	0	Median	44779000	23856000	20923000	6326	897	5935	12738	31282;31283;31284	31282		3	9606
ICGDIHGQYTDLLR	0	1	Unmodified	1659.8039	0.80388973	964	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	0	10	4						2								2			16.274	16.274	2;3	7.272E-05	9648	DP690-6	116.63	88.002			3.0913	3.5167	181.74	2	0	Median	257680000	130300000	127380000	6327	964	5936	12739;12740;12741;12742	31285;31286;31287;31288;31289;31290;31291;31292	31291		8	9606
ICGDIHGQYYDLLR	0	1	Unmodified	1721.8195	0.8195398	963;683	P62136;P36873	PPP1CA;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	14	0														1			17.042	17.042	3	1.2542E-05	11700	DP690-14	133.04	98.861			0.9098	1.0409	NaN	1	0	Median	248010000	132320000	115690000	6328	963;683	5937	12743	31293;31294	31293		2	9606
ICGLSPTTTLAIYFEVVNQHNAPIPQGGR	0	1	Unmodified	3152.6077	0.60770312	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	11	0											1						22.509	22.509	3	6.442E-06	19932	DP690-11	109.84	109.84			NaN	NaN	NaN	0	0	Median	17630000	9861700	7767800	6329	1332	5938	12744	31295;31296	31295		2	9606
ICPNAPDP	0	0	Unmodified	882.39055	0.39055269	1742	Q8WUZ0	BCL7C	B-cell CLL/lymphoma 7 protein family member C	yes	yes	0	0	0	14	0														1			13.134	13.134	1	0.018507	6308	DP690-14	99.375	80.57			NaN	NaN	NaN	0	0	Median	0	0	0	6330	1742	5939	12745	31297	31297		1	9606
ICSKPVVLPK	2	0	Unmodified	1139.6737	0.67365083	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								11.669	11.669	3	0.0012835	4183	DP690-9	94.363	75.617			0.77334	0.9532	NaN	1	0	Median	4019200	2018800	2000400	6331	1046	5940	12746	31298;31299;31300;31301	31301		4	9606
ICSLHSLPPQS	0	0	Unmodified	1237.6125	0.61250714	362	P03928	MT-ATP8	ATP synthase protein 8	yes	yes	0	0	0	14.4	3.2								1								4	13.502	13.502	2	0.00075794	6503	DP690-16	140.83	63.553			NaN	NaN	NaN	0	0	Median	0	0	0	6332	362	5941	12747;12748;12749;12750;12751	31302;31303;31304;31305;31306;31307	31302		6	9606
ICSLQEEQQQLR	0	1	Unmodified	1530.746	0.7460405	1930	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	4	0				1													14.317	14.317	2	0.0013659	7650	DP690-4	127.76	80.206			NaN	NaN	NaN	0	0	Median	0	0	0	6333	1930	5942	12752	31308	31308		1	9606
ICTGQVPSAEDEPAPK	1	0	Unmodified	1697.7931	0.79305028	1997	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	10	0										1							13.292	13.292	2	0.0010682	7053	DP690-10	92.792	75.425			0.5715	0.70253	NaN	1	0	Median	44467000	29168000	15300000	6334	1997	5943	12753	31309;31310;31311	31310		3	9606
IDALNENK	1	0	Unmodified	915.46616	0.46616048	36	CON__P02754			yes	yes	0	0	0	1	0	1																10.989	10.989	2	4.8569E-05	2953	DP690-1	157.21	77.758		+	NaN	NaN	NaN	0	0	Median	14319000	14319000	0	6335	36	5944	12754	31312;31313	31312		2	
IDATTVFVDPYEEADAQIAQER	0	1	Unmodified	2480.1707	0.17071332	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	12	0												1					21.055	21.055	2	4.4663E-19	17180	DP690-12	181.58	145.75			0.67101	0.81793	NaN	1	0	Median	8040200	4486900	3553300	6336	1200	5945	12755	31314;31315;31316;31317	31315		4	9606
IDCFSEVPTSVFGEK	1	0	Unmodified	1713.792	0.79198764	95	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	12	0												1					19.543	19.543	2	0.0093805	15253	DP690-12	104.59	55.313			NaN	NaN	NaN	0	0	Median	10590000	0	10590000	6337	95	5946	12756	31318;31319	31318		2	9606
IDDMMFVLQGQWMR	0	1	3 Oxidation (M)	1816.7946	0.79464696	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	3	0	13	0													1				18.674	18.674	2	0.0083049	13664	DP690-13	80.737	60.356			1.0153	1.2441	NaN	1	0	Median	31911000	15918000	15994000	6338	637	5947	12757	31320;31321;31322	31320	880;881;882	3	9606
IDDMMFVLQGQWMR	0	1	2 Oxidation (M)	1800.7997	0.79973233	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	2	0	13	0													1				20.202	20.202	2	0.034981	15783	DP690-13	67.207	28.027			0.8328	1.0273	NaN	1	0	Median	19923000	10162000	9761500	6339	637	5947	12758	31323	31323	880;881;882	1	9606
IDDMMFVLQGQWMR	0	1	Oxidation (M)	1784.8048	0.80481771	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	1	0	13	0													1				21.591	21.591	2	0.034712	17478	DP690-13	68.893	52.361			1.0102	1.2327	NaN	1	0	Median	11522000	5765200	5757100	6340	637	5947	12759	31324;31325	31325	880;881;882	2	9606
IDDVLHTLTGAMSLLR	0	1	Oxidation (M)	1769.9346	0.93456956	895	P55196	MLLT4	Afadin	yes	yes	0	1	0	10	0										1							20.448	20.448	3	0.0010686	17447	DP690-10	84.62	84.62			0.90452	1.1289	NaN	1	0	Median	27393000	12348000	15045000	6341	895	5948	12760	31326	31326	1374	1	9606
IDDVVNTR	0	1	Unmodified	930.47706	0.47705951	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	4	0				1													11.844	11.844	2	0.049649	4444	DP690-4	135.77	70.963			1.5023	1.7102	NaN	1	0	Median	23959000	10228000	13731000	6342	827	5949	12761	31327	31327		0	9606
IDEIKNDNVQDTAEQK	2	0	Unmodified	1858.8909	0.89085007	583	P25445	FAS	Tumor necrosis factor receptor superfamily member 6	yes	yes	0	0	1	14	0														1			11.759	11.759	3	7.7285E-18	4498	DP690-14	164.7	125.53			NaN	NaN	NaN	0	0	Median	73819000	73819000	0	6343	583	5950	12762	31328	31328		1	9606
IDEMPEAAVK	1	0	Oxidation (M)	1117.5325	0.53252548	844	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	1	0	6	0						1											11.681	11.681	2	0.013652	4157	DP690-6	86.136	55.632			0.68557	0.77553	NaN	1	0	Median	21227000	11812000	9415200	6344	844	5951	12763	31329;31330;31331;31332	31330	1271	4	9606
IDEPLEGSEDR	0	1	Unmodified	1258.5677	0.56772501	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	10.4	4.56				2					1			1	1		1	1	13.433	13.433	2	2.4731E-06	6358	DP690-4	225.66	185.82			0.74157	0.82502	17.229	6	0	Median	3698999999.9999995	2092899999.9999998	1606099999.9999998	6345	959	5952	12764;12765;12766;12767;12768;12769;12770	31333;31334;31335;31336;31337;31338;31339;31340;31341;31342;31343;31344;31345;31346;31347;31348;31349;31350;31351	31345		19	9606
IDEYDYSKPIQGQQK	2	0	Unmodified	1810.8737	0.87374344	632	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	1	12	0												1					13.274	13.274	3	9.5294E-06	6539	DP690-12	144.51	99.056			0.71538	0.82085	NaN	1	0	Median	58118000	33932000	24186000	6346	632	5953	12771	31352;31353;31354	31352		3	9606
IDFEDVIAEPEGTHSFDGIWK	1	0	Unmodified	2404.1223	0.12230657	1103	Q03135	CAV1	Caveolin-1	yes	yes	0	0	0	9	0									1								21.677	21.677	3	1.9233E-06	16801	DP690-9	128.72	104.69			NaN	NaN	NaN	0	0	Median	4466700	0	4466700	6347	1103	5954	12772	31355;31356	31355		2	9606
IDFLPHYDTLVK	1	0	Unmodified	1459.7711	0.77111627	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							18.698	18.698	3	1.7708E-05	14756	DP690-10	126.71	80.55			0.77258	0.95068	NaN	1	0	Median	157040000	82885000	74151000	6348	13	5955	12773	31357;31358;31359;31360;31361;31362;31363	31357		7	9606
IDFSKLTSLNVK	2	0	Unmodified	1363.7711	0.77111627	595;338	P26599;O95758	PTBP1;PTBP3	Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3	no	no	0	0	1	12	0												1					18.374	18.374	3	0.0097198	13713	DP690-12	69.846	69.846			0.77633	0.91148	NaN	1	0	Median	21488000	10664000	10824000	6349	595;338	5956	12774	31364	31364		1	9606
IDGATQSSPAEPK	1	0	Unmodified	1299.6307	0.63065962	1384	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	3	0			1														10.533	10.533	2	3.6268E-05	2845	DP690-3	129	89.697			1.027	1.0975	NaN	1	0	Median	13923000	4407900	9515200	6350	1384	5957	12775	31365	31365		1	9606
IDGVSLLVQR	0	1	Unmodified	1098.6397	0.63970816	1468	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	15	0															1		17.84	17.84	2	9.4599E-05	12473	DP690-15	147.51	85.509			0.84759	0.98497	NaN	1	0	Median	23462000	14172000	9290500	6351	1468	5958	12776	31366;31367;31368;31369	31367		4	9606
IDHILDAL	0	0	Unmodified	908.49673	0.49673232	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	11	1										1		1					18.81	18.81	2	0.069057	14273	DP690-12	89.673	55.935			NaN	NaN	NaN	0	0	Median	0	0	0	6352	375	5959	12777;12778	31370;31371	31371		2	9606
IDIIPNPQER	0	1	Unmodified	1193.6404	0.64043645	416	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	7	4			1								1						16.297	16.297	2	0.00057987	11394	DP690-11	116.37	55.028			0.76256	0.83139	3.8983	2	0	Median	474760000	257850000	216910000	6353	416	5960	12779;12780	31372;31373;31374;31375;31376;31377	31374		6	9606
IDILDSALLRPGR	0	2	Unmodified	1437.8304	0.83036248	966	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	1	5	0					1												19.097	19.097	3	3.1743E-05	13261	DP690-5	143.17	143.17			1.1363	1.1222	NaN	1	0	Median	33645000	17651000	15995000	6354	966	5961	12781	31378;31379	31378		2	9606
IDILTELR	0	1	Unmodified	971.56515	0.56514624	62	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	12	0												1					19.382	19.382	2	0.0573	15041	DP690-12	101.33	59.675			NaN	NaN	NaN	0	0	Median	0	0	0	6355	62	5962	12782	31380	31380		1	9606
IDILTELRDK	1	1	Unmodified	1214.6871	0.68705229	62	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	1	11	0											1						17.76	17.76	3	0.023183	13437	DP690-11	61.765	37.675			0.76035	0.92941	NaN	1	0	Median	52922000	28266000	24656000	6356	62	5963	12783	31381;31382	31381		2	9606
IDINMSGFNETDDLKR	1	1	Oxidation (M)	1882.8731	0.87309151	484	P13797	PLS3	Plastin-3	yes	yes	0	1	1	4	0				1													15.417	15.417	3	4.7523E-05	9081	DP690-4	117.48	92.691			0.79351	0.90502	NaN	1	0	Median	28921000	15596000	13325000	6357	484	5964	12784	31383;31384;31385	31384	603	3	9606
IDISPAPENPHYCLTPELLQVK	1	0	Unmodified	2533.2887	0.28866039	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										4							19.233	19.233	3	0.0004881	15616	DP690-10	110.64	73.403			NaN	NaN	NaN	0	0	Median	0	0	0	6358	1901	5965	12785;12786;12787;12788	31386;31387;31388;31389	31388		4	9606
IDKLEQDMER	1	1	Unmodified	1275.6129	0.61290107	1732	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	1	12	0												1					12.464	12.464	3	0.0083259	5392	DP690-12	74.944	50.09			1.2557	1.5725	NaN	1	0	Median	43383000	12417000	30966000	6359	1732	5966	12789	31390;31391	31390		2	9606
IDKLMIEMDGTENK	2	0	2 Oxidation (M)	1667.7746	0.77462302	395	P06733	ENO1	Alpha-enolase	yes	yes	0	2	1	5	0					1												12.678	12.678	3	0.057772	5272	DP690-5	57.794	18.816			NaN	NaN	NaN	0	0	Median	0	0	0	6360	395	5967	12790	31392	31392		1	9606
IDLAGSSLSGILDKDLSDR	1	1	Unmodified	1974.0269	0.026949617	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	1	9	4					1								1				20.363	20.363	3	1.0932E-14	15884	DP690-13	195.17	157.59			0.85537	0.9365	13.609	2	0	Median	128750000	68583000	60166000	6361	1823	5968	12791;12792	31393;31394;31395;31396;31397	31393		5	9606
IDLNYLR	0	1	Unmodified	905.49707	0.49706667	1586	Q86X76	NIT1	Nitrilase homolog 1	yes	yes	0	0	0	7	0							1										17.178	17.178	2	0.00013428	11041	DP690-7	150.82	58.126			NaN	NaN	NaN	0	0	Median	18216000	18216000	0	6362	1586	5969	12793	31398;31399;31400	31399		3	9606
IDLPAENSNSETIIITGK	1	0	Unmodified	1913.9946	0.99458686	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							18.331	18.331	2	1.5464E-09	14306	DP690-10	177.93	156.92			0.70308	0.86788	NaN	1	0	Median	84391000	50337000	34055000	6363	1071	5970	12794	31401;31402;31403;31404	31402		4	9606
IDLRPVLGEGVPILASFLR	0	2	Unmodified	2064.2095	0.20954585	1576	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	1	11	0											1						25.063	25.063	3	0.005955	22989	DP690-11	61.276	61.276			1.079	1.3301	NaN	1	0	Median	5381400	2451400	2929900	6364	1576	5971	12795	31405;31406	31406		2	9606
IDLTLLNR	0	1	Unmodified	956.56548	0.56548059	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							18.471	18.471	2	0.047408	14546	DP690-10	133.81	45.784			0.81939	1.0044	NaN	1	0	Median	152260000	83016000	69246000	6365	1492	5972	12796	31407	31407		0	9606
IDMNLTDLLGELQR	0	1	Oxidation (M)	1645.8345	0.83452116	1332;1333	Q15437;Q15436	SEC23B;SEC23A	Protein transport protein Sec23B;Protein transport protein Sec23A	no	no	0	1	0	8.33	3.77			1								2						23.283	23.283	2	1.4108E-13	18217	DP690-3	215.77	132.63			0.86733	1.013	8.786	2	0	Median	89654000	49236000	40419000	6366	1333;1332	5973	12797;12798;12799	31408;31409;31410;31411;31412;31413;31414;31415;31416;31417;31418;31419	31418	2078	12	9606
IDMNLTDLLGELQR	0	1	Unmodified	1629.8396	0.83960654	1332;1333	Q15437;Q15436	SEC23B;SEC23A	Protein transport protein Sec23B;Protein transport protein Sec23A	no	no	0	0	0	11	0											1						24.459	24.459	2	8.901E-31	22219	DP690-11	326.85	276.06			0.81522	0.9787	NaN	1	0	Median	26734000	13530000	13204000	6367	1333;1332	5973	12800	31420;31421;31422;31423;31424	31423		5	9606
IDPHAPNEMLYGR	0	1	Oxidation (M)	1527.714	0.71401209	191	O43813	LANCL1	LanC-like protein 1	yes	yes	0	1	0	6	0						1											13.167	13.167	3	0.0015067	5884	DP690-6	88.101	72.303			0.67731	0.74096	NaN	1	0	Median	52104000	30028000	22076000	6368	191	5974	12801	31425;31426;31427;31428	31425	203	4	9606
IDPHAPNEMLYGR	0	1	Unmodified	1511.7191	0.71909747	191	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	6	0						1											14.764	14.764	3	0.00018529	7843	DP690-6	108.32	96.953			0.74901	0.84045	NaN	1	0	Median	24172000	13431000	10741000	6369	191	5974	12802	31429;31430;31431;31432	31432		4	9606
IDPLALVQAIER	0	1	Unmodified	1336.7715	0.77145062	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	5	3.56		1	1							1							23.507	23.507	2	0.00039503	21381	DP690-10	158.47	120.96			0.86	0.93004	10.389	3	0	Median	45567000	24163000	21404000	6370	1282	5975	12803;12804;12805	31433;31434;31435;31436;31437;31438;31439;31440;31441	31433		9	9606
IDPNVLLDPADEKLLEEEIQAPTSSK	2	0	Unmodified	2863.4702	0.47024939	1666	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	1	12	0												1					21.789	21.789	3	0.00010706	18078	DP690-12	103.71	92.831			0.70252	0.81571	NaN	1	0	Median	7925200	4960700	2964500	6371	1666	5976	12806	31442	31442		1	9606
IDPQTGWPFFVDHNSR	0	1	Unmodified	1914.9013	0.90129559	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	4	0				1													19.219	19.219	3	0.047591	13871	DP690-4	45.083	22.075			0.86597	1.0006	NaN	1	0	Median	3482100	1397400	2084700	6372	342	5977	12807	31443;31444	31444		2	9606
IDPSTLQMWANILK	1	0	Oxidation (M)	1644.8545	0.85452832	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	1	0	11	0											1						23.472	23.472	2	0.020785	21085	DP690-11	96.171	66.167			NaN	NaN	NaN	0	0	Median	0	0	0	6373	149	5978	12808	31445	31445	166	1	9606
IDQLEGDHQLIQEALIFDNK	1	0	Unmodified	2338.1805	0.18049015	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	7	4			1								1						20.566	20.566	3	2.685E-12	17338	DP690-11	167.97	136.58			1.1837	1.28	38.621	2	0	Median	329940000	168520000	161420000	6374	476	5979	12809;12810	31446;31447;31448;31449;31450;31451;31452	31446		7	9606
IDQLIVFGEQLIQK	1	0	Unmodified	1642.9294	0.92940782	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								22.743	22.743	2	0.01472	18113	DP690-9	71.888	58.88			0.82229	0.99785	NaN	1	0	Median	2418800	1248100	1170700	6375	1762	5980	12811	31453	31453		1	9606
IDQLQEELLHTQLK	1	0	Unmodified	1706.9203	0.9202997	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	3	0			1														17.535	17.535	3	0.0047552	12026	DP690-3	96.135	40.294			NaN	NaN	NaN	0	0	Median	16660000	16660000	0	6376	203	5981	12812	31454;31455	31455		2	9606
IDSANMNDDITTSLR	0	1	Oxidation (M)	1680.7625	0.76247843	2440	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	1	0	11	0											2						14.889	14.889	2	0.0024924	9171	DP690-11	125.28	87.728			NaN	NaN	NaN	0	0	Median	39315000	19370000	19945000	6377	2440	5982	12813;12814	31456;31457;31458;31459	31456	2890	4	9606
IDSDDALNHDFFWSDPMPSDLK	1	0	Oxidation (M)	2580.1115	0.11148388	824	P50750	CDK9	Cyclin-dependent kinase 9	yes	yes	0	1	0	14	0														1			20.133	20.133	3	0.0026654	15731	DP690-14	65.855	65.855			0.59234	0.71228	NaN	1	0	Median	25286000	11685000	13602000	6378	824	5983	12815	31460;31461;31462;31463	31460	1238	4	9606
IDSILEVVQTGR	0	1	Unmodified	1328.73	0.72997974	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	12	0												1					19.642	19.642	2	7.7464E-10	15412	DP690-12	265.31	216.22			0.80967	0.94784	NaN	1	0	Median	96134000	50702000	45432000	6379	2280	5984	12816	31464;31465;31466	31465		3	9606
IDSLSAQLSQLQK	1	0	Unmodified	1429.7777	0.77765821	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.2	0.4											4	1					17.969	17.969	2	1.2083E-20	13663	DP690-11	279.9	200.42			0.81223	0.89371	NaN	1	0	Median	247570000	139950000	107630000	6380	359	5985	12817;12818;12819;12820;12821	31467;31468;31469;31470;31471;31472;31473;31474;31475;31476	31467		10	9606
IDSVLLTHIGADNLPGINGLLQR	0	1	Unmodified	2428.3438	0.3438075	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								21.692	21.692	3	0.0012407	16916	DP690-9	70.121	48.992			0.634	0.79502	NaN	1	0	Median	6836400	4199300	2637200	6381	1048	5986	12822	31477;31478;31479	31479		3	9606
IDSVYLDPLVFR	0	1	Unmodified	1435.7711	0.77111627	206	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	4	0				1													21.609	21.609	2	4.6373E-05	16605	DP690-4	128.27	98.796			0.71775	0.8295	NaN	1	0	Median	3666200	2556300	1109900	6382	206	5987	12823	31480	31480		1	9606
IDTIEIITDR	0	1	Unmodified	1187.6398	0.63976774	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	14.5	0.5														1	1		18.259	18.259	2	4.5206E-05	13289	DP690-14	211.48	150.8			0.8784	1.0043	NaN	1	0	Median	254690000	136270000	118420000	6383	563	5988	12824;12825	31481;31482;31483;31484;31485;31486	31483		6	9606
IDVDAPDIDIHGPDAK	1	0	Unmodified	1689.821	0.82097959	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							16.379	16.379	3	4.5899E-05	10314	DP690-9	120.54	107.76			0.68038	0.80744	NaN	1	0	Median	103900000	86073000	17829000	6384	1145	5989	12826;12827	31487;31488;31489;31490;31491;31492	31490		6	9606
IDVIDWLVFDPAQR	0	1	Unmodified	1685.8777	0.8777066	912	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	11	0											1						24.921	24.921	2	0.00022795	22892	DP690-11	115.83	115.83			0.88935	1.091	NaN	1	0	Median	5614300	2768100	2846100	6385	912	5990	12828	31493;31494;31495;31496	31495		4	9606
IDVPANRYDLLCLEGLVR	0	2	Unmodified	2115.1147	0.11465919	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	1	12	0												1					20.905	20.905	3	0.00011978	16947	DP690-12	108.56	108.56			0.86228	0.97769	NaN	1	0	Median	124920000	65374000	59542000	6386	2210	5991	12829	31497;31498;31499;31500	31497		4	9606
IDVTAPDVSIEEPEGK	1	0	Unmodified	1697.836	0.83596095	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.67	0.471									1	2							17.221	17.221	2	6.7446E-09	11447	DP690-9	196.27	170.23			0.66435	0.80572	NaN	1	0	Median	34009000	19165000	14845000	6387	1145	5992	12830;12831;12832	31501;31502;31503;31504	31504		4	9606
IDVYGFSALWK	1	0	Unmodified	1297.6707	0.67067394	2325	Q9UBV8	PEF1	Peflin	yes	yes	0	0	0	7	0							1										22.079	22.079	2	0.0048484	17021	DP690-7	88.496	62.936			0.75997	0.82706	NaN	1	0	Median	9102100	5358400	3743700	6388	2325	5993	12833	31505;31506	31505		2	9606
IDYANLTGISVSSLSDSLFVLHVQR	0	1	Unmodified	2733.4337	0.43374472	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	10	1									1		1						23.558	23.558	3	8.426E-05	21255	DP690-11	111.99	111.99			0.61551	0.76283	17.644	2	0	Median	9579200	5654400	3924800	6389	65	5994	12834;12835	31507;31508;31509	31507		3	9606
IDYGEYMDKNNVR	1	1	Oxidation (M)	1631.725	0.72497071	1112	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	1	1	16	0																1	12.668	12.668	3	0.0015073	5517	DP690-16	86.911	73.774			0.98861	1.0984	NaN	1	0	Median	26246000	15125000	11121000	6390	1112	5995	12836	31510;31511	31510	1725	2	9606
IEAINQAIANEYEVR	0	1	Unmodified	1731.8792	0.87916317	1680	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	0	9.67	4.03				1								1	1				17.967	17.967	2	6.4228E-16	13138	DP690-12	256.95	214.14			1.058	1.2642	38.92	2	0	Median	140000000	73784000	66211000	6391	1680	5996	12837;12838;12839	31512;31513;31514;31515;31516;31517;31518;31519;31520;31521	31514		10	9606
IEALQNHENESVYK	1	0	Unmodified	1672.8057	0.80566387	850	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	4	0				1													12.483	12.483	3	0.020307	5226	DP690-4	56.569	29.921			1.2805	1.3727	NaN	1	0	Median	4281400	1694600	2586800	6392	850	5997	12840	31522	31522		1	9606
IEANVNSVVTEEKDDAVTSAGSEEK	2	0	Unmodified	2620.2352	0.23516407	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	1	9	0									2								15.607	15.607	3	2.667E-08	9367	DP690-9	126.45	99.367			NaN	NaN	NaN	0	0	Median	2776400	0	2776400	6393	1696	5998	12841;12842	31523;31524;31525	31524		3	9606
IECDDKGDGSCDVR	1	1	Unmodified	1624.6457	0.64573411	549;1270	P21333;Q14315	FLNA;FLNC	Filamin-A;Filamin-C	no	no	0	0	1	9.17	3.24		1								2	3						10.382	10.382	2;3	1.8168E-13	2779	DP690-10	212.68	195.51			0.80996	0.75647	14.737	3	0	Plateau	8769300000	5108000000	3661299999.9999995	6394	549;1270	5999	12843;12844;12845;12846;12847;12848	31526;31527;31528;31529;31530;31531;31532;31533;31534;31535;31536;31537;31538;31539;31540	31530		15	9606
IEDFGLHFVR	0	1	Unmodified	1231.635	0.63495714	1995	Q9BT40	INPP5K	Inositol polyphosphate 5-phosphatase K	yes	yes	0	0	0	7	3.46					3								1				17.646	17.646	3	0.00024836	12336	DP690-13	112.11	73.54			0.79909	0.96535	NaN	1	0	Median	84984000	53227000	31756000	6395	1995	6000	12849;12850;12851;12852	31541;31542;31543;31544;31545;31546;31547;31548	31541		8	9606
IEDGNDFGVAIQEK	1	0	Unmodified	1533.7311	0.73110195	2384	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	7	0							1										16.432	16.432	2	4.8098E-05	10107	DP690-7	169.65	108.09			0.82619	0.87929	NaN	1	0	Median	104200000	56864000	47332000	6396	2384	6001	12853	31549;31550	31549		2	9606
IEDGNNFGVAVQEK	1	0	Unmodified	1518.7314	0.7314363	1124	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	7	0							1										14.887	14.887	2	5.6237E-09	8167	DP690-7	196.24	139.81			0.64441	0.68344	NaN	1	0	Median	135840000	66259000	69585000	6397	1124	6002	12854	31551;31552	31552		2	9606
IEDLEEGQQVIR	0	1	Unmodified	1427.7256	0.72562264	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	9	0									1								15.391	15.391	2	0.029729	9040	DP690-9	79.489	46.739			0.88164	1.1038	NaN	1	0	Median	4953100	2363800	2589300	6398	1240	6003	12855	31553	31553		1	9606
IEDLSQQAQLAAAEK	1	0	Unmodified	1613.8261	0.82606496	59	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	0	0	10.5	4.03						1	1							1	1		15.594	15.594	2	8.1614E-16	9650	DP690-14	232.78	169.46			0.96483	1.1336	14.368	4	0	Median	241250000	121410000	119840000	6399	59	6004	12856;12857;12858;12859	31554;31555;31556;31557;31558;31559;31560;31561;31562;31563;31564;31565;31566;31567;31568;31569	31557		16	9606
IEDSGENLETEPLESQDR	0	1	Unmodified	2059.9182	0.91818703	1039	P78345	RPP38	Ribonuclease P protein subunit p38	yes	yes	0	0	0	14	0														2			15.583	15.583	2	1.1149E-10	9671	DP690-14	192.39	156.09			NaN	NaN	NaN	0	0	Median	0	0	0	6400	1039	6005	12860;12861	31570;31571	31570		2	9606
IEDTVFHVFDK	1	0	Unmodified	1348.6663	0.66631685	2440	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	11	0											1						17.76	17.76	3	0.00073641	13435	DP690-11	77.387	49.833			0.99344	1.2018	NaN	1	0	Median	61196000	36406000	24790000	6401	2440	6006	12862	31572;31573;31574;31575	31574		4	9606
IEDVTPIPSDSTR	0	1	Unmodified	1428.7096	0.70963822	971	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	12	4								1								1	14.902	14.902	2	9.7189E-11	8353	DP690-16	238.51	197.06			0.77198	0.81188	9.4781	2	0	Median	980180000	555970000	424210000	6402	971	6007	12863;12864	31576;31577;31578;31579;31580;31581;31582;31583;31584;31585;31586;31587;31588	31577		13	9606
IEDVTPIPSDSTRR	0	2	Unmodified	1584.8107	0.81074925	971	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	13.3	3.77								1								2	13.486	13.486	2;3	1.3491E-13	6516	DP690-16	211.86	157.6			0.78598	0.83041	42.313	3	0	Plateau	572670000	317140000	255540000	6403	971	6008	12865;12866;12867	31589;31590;31591;31592;31593;31594;31595;31596;31597;31598	31593		10	9606
IEEDTENMAEK	1	0	Unmodified	1307.5551	0.55511142	2148	Q9H9H4	VPS37B	Vacuolar protein sorting-associated protein 37B	yes	yes	0	0	0	14	0														1			11.406	11.406	2	0.00010139	3945	DP690-14	153.05	131.3			1.0601	1.2692	NaN	1	0	Median	21252000	10083000	11168000	6404	2148	6009	12868	31599;31600	31599		2	9606
IEEFLSSFEEK	1	0	Unmodified	1356.6449	0.6449127	194	O43847	NRD1	Nardilysin	yes	yes	0	0	0	3	0			1														18.954	18.954	2	0.02141	13812	DP690-3	98.048	18.9			NaN	NaN	NaN	0	0	Median	0	0	0	6405	194	6010	12869	31601	31601		1	9606
IEEGLDQINK	1	0	Unmodified	1157.5928	0.59281755	66	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	15	0															1		13.888	13.888	2	9.2244E-05	7247	DP690-15	151.44	82.526			0.83111	0.96454	NaN	1	0	Median	45130000	26238000	18893000	6406	66	6011	12870	31602;31603;31604;31605	31605		4	9606
IEEGLDQINKDMR	1	1	Oxidation (M)	1575.7563	0.75627084	66	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	1	1	15	0															1		13.05	13.05	3	0.010589	6099	DP690-15	67.118	33.118			0.73598	0.84435	NaN	1	0	Median	35039000	19217000	15822000	6407	66	6012	12871	31606;31607	31606	75	2	9606
IEEIKDFLLTAR	1	1	Unmodified	1446.8082	0.80823006	1018	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	1	16	0																1	18.738	18.738	3	1.9353E-05	13171	DP690-16	126.83	98.505			0.9719	1.0727	NaN	1	0	Median	31527000	16398000	15129000	6408	1018	6013	12872	31608;31609;31610;31611	31610		4	9606
IEEQLTLEK	1	0	Unmodified	1101.5918	0.59175492	628	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	6	0						1											14.468	14.468	2	0.00082244	7449	DP690-6	131.06	41.919			0.73058	0.82961	NaN	1	0	Median	18775000	10040000	8734700	6409	628	6014	12873	31612;31613	31612		2	9606
IEEVPELPLVVEDK	1	0	Unmodified	1607.8658	0.86580451	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	13	0													1				20.187	20.187	2	0.0010951	15701	DP690-13	99.5	80.969			0.70078	0.80989	NaN	1	0	Median	61862000	35366000	26496000	6410	681	6015	12874	31614;31615;31616;31617	31615		4	9606
IEEVPELPLVVEDKVEGYKK	3	0	Unmodified	2312.2515	0.25152982	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	2	13	0													1				18.481	18.481	4	0.00043291	13419	DP690-13	101.54	80.691			0.87784	0.91955	NaN	1	0	Median	189320000	101490000	87834000	6411	681	6016	12875	31618;31619	31618		2	9606
IEFEQTLAANEQAGPINR	0	1	Unmodified	1999.9963	0.99631819	1448	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	11	0											2						17.55	17.55	2	2.6390999999999996E-21	13052	DP690-11	228.61	136.67			NaN	NaN	NaN	0	0	Median	0	0	0	6412	1448	6017	12876;12877	31620;31621	31620		2	9606
IEFGVDEVIEPSDTLPR	0	1	Unmodified	1914.9575	0.95747307	1287	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	11	0											2						20.45	20.45	2	1.7338E-07	17175	DP690-11	161.87	112.52			NaN	NaN	NaN	0	0	Median	18404000	13369000	5035300	6413	1287	6018	12878;12879	31622;31623;31624	31624		3	9606
IEGDETSTEAATR	0	1	Unmodified	1378.6212	0.62121715	854	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	16	0																1	10.664	10.664	2	4.2349E-05	3236	DP690-16	152.7	117.43			0.9645	1.1218	NaN	1	0	Median	13344000	6512900	6831200	6414	854	6019	12880	31625;31626;31627;31628	31625		4	9606
IEGDMIVCAAYAHELPK	1	0	Unmodified	1915.9172	0.91720493	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	14	0														1			17.717	17.717	3	0.00017578	12658	DP690-14	103.77	79.726			0.90894	1.0954	NaN	1	0	Median	99329000	54724000	44605000	6415	757	6020	12881	31629;31630	31630		2	9606
IEGDMIVCAAYAHELPK	1	0	Oxidation (M)	1931.9121	0.91211956	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	0	14	0														1			16.974	16.974	3	0.028975	11451	DP690-14	74.726	28.862			NaN	NaN	NaN	0	0	Median	83314000	83314000	0	6416	757	6020	12882	31631	31631	1126	1	9606
IEGDNENKLPR	1	1	Unmodified	1283.647	0.64697839	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	8.25	4.26				2								1	1				10.657	10.657	3	9.631E-05	3003	DP690-12	180.67	157.35			0.71024	0.75885	NaN	1	0	Median	322190000	191510000	130690000	6417	829	6021	12883;12884;12885;12886	31632;31633;31634;31635;31636;31637;31638	31632		7	9606
IEGDPQGVQQAK	1	0	Unmodified	1268.6361	0.63607935	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							10.713	10.713	2	4.5906E-05	3276	DP690-10	182.65	126.97			0.69361	0.79547	NaN	1	0	Median	399110000	235240000	163870000	6418	1071	6022	12887	31639;31640;31641;31642	31640		4	9606
IEGEGSVLQAK	1	0	Unmodified	1129.5979	0.59790293	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														13.135	13.135	2	0.00069907	6179	DP690-3	109.29	61.421			0.8863	0.94086	NaN	1	0	Median	31220000	16135000	15085000	6419	1293	6023	12888	31643;31644;31645	31644		3	9606
IEGEMQVPDVDIR	0	1	Oxidation (M)	1515.7239	0.72390808	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9.5	0.5									1	1							15.776	15.776	2	0.00030662	9504	DP690-9	119.74	83.158			0.64073	0.78004	1.728	2	0	Median	179370000	111060000	68314000	6420	1145	6024	12889;12890	31646;31647;31648;31649;31650;31651	31647	1775	6	9606
IEGEMQVPDVDIR	0	1	Unmodified	1499.729	0.72899346	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							17.793	17.793	2	0.00017833	13545	DP690-10	152.64	102.92			0.93162	1.1556	NaN	1	0	Median	99213000	46521000	52691000	6421	1145	6024	12891;12892	31652;31653;31654;31655;31656	31652		5	9606
IEGLLAAFPK	1	0	Unmodified	1057.6172	0.61718181	775	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	4	0				1													19.429	19.429	2	0.0050016	14068	DP690-4	90.657	43.082			4.9165	5.2733	NaN	1	0	Median	4498200	658890	3839300	6422	775	6025	12893	31657	31657		1	9606
IEGTQESQMVGSSSTR	0	1	Oxidation (M)	1711.7683	0.76829209	2131	Q9H792	PEAK1	Pseudopodium-enriched atypical kinase 1	yes	yes	0	1	0	10	0										2							10.738	10.738	2	0.0049051	3388	DP690-10	82.515	59.001			0.8278	1.0368	NaN	1	0	Median	47139000	23103000	24036000	6423	2131	6026	12894;12895	31658;31659	31658	2628	2	9606
IEGTQESQMVGSSSTR	0	1	Unmodified	1695.7734	0.77337747	2131	Q9H792	PEAK1	Pseudopodium-enriched atypical kinase 1	yes	yes	0	0	0	10	0										1							12.512	12.512	2	5.4775E-11	5857	DP690-10	201.04	121.84			NaN	NaN	NaN	0	0	Median	0	0	0	6424	2131	6026	12896	31660	31660		1	9606
IEGYEDQVLITEHGDLGNGK	1	0	Unmodified	2186.0491	0.049141622	768	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	0	14	0														1			16.485	16.485	3	0.0066803	11036	DP690-14	57.482	57.482			0.72705	0.8847	NaN	1	0	Median	37818000	20723000	17095000	6425	768	6027	12897	31661	31661		1	9606
IEGYEDQVLITEHGDLGNSR	0	1	Unmodified	2244.0659	0.065854319	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	12	3.46						1								3			16.609	16.609	2;3	2.5481E-30	11168	DP690-14	246.96	182.13			0.85294	0.96426	5.0808	2	0	Median	420790000	223380000	197410000	6426	864	6028	12898;12899;12900;12901	31662;31663;31664;31665;31666;31667;31668;31669;31670;31671	31667		10	9606
IEIESFYEGEDFSETLTR	0	1	Unmodified	2163.9848	0.98481003	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	11	0											1						21.223	21.223	2	1.873E-11	18270	DP690-11	174.46	152.1			0.92567	1.1171	NaN	1	0	Median	23044000	11920000	11124000	6427	462	6029	12902	31672;31673	31672		2	9606
IEILAPPNGSVPGDR	0	1	Unmodified	1533.8151	0.81510635	1168	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	6	0						1											16.987	16.987	2	0.073119	10551	DP690-6	88.803	47.694			NaN	NaN	NaN	0	0	Median	1345700	1345700	0	6428	1168	6030	12903	31674	31674		1	9606
IEIQNIFEEAQSLVR	0	1	Unmodified	1787.9418	0.94176342	2382	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	yes	yes	0	0	0	9	4					1								1				24.127	24.127	2	2.0627E-05	20399	DP690-13	140.31	93.329			1.0843	1.1877	6.8968	2	0	Median	8198100	4123600	4074400	6429	2382	6031	12904;12905	31675;31676	31675		2	9606
IEISELNR	0	1	Unmodified	972.52401	0.52400971	369;44	P35908;CON__P35908v2;CON__P35908;P04264;CON__P04264	KRT2;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1	no	no	0	0	0	7.92	5.04	1	1	1	1	1	1		1	1			1		1	1	1	14.786	14.786	2	1.6139E-10	7426	DP690-2	189.62	55.561		+	NaN	NaN	NaN	0	0	Median	1023899999.9999999	1023899999.9999999	0	6430	44;369	6032	12906;12907;12908;12909;12910;12911;12912;12913;12914;12915;12916;12917	31677;31678;31679;31680;31681;31682;31683;31684;31685;31686;31687;31688;31689;31690;31691;31692;31693;31694;31695;31696;31697;31698;31699	31685		23	9606
IEISTIASNYHLEVNPSDAGNSDR	0	1	Unmodified	2601.2307	0.23068782	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	14	0														2			18.397	18.397	3	7.3831E-06	13490	DP690-14	119.83	88.467			0.78174	0.94685	NaN	1	0	Median	41399000	23119000	18280000	6431	712	6033	12918;12919	31700;31701;31702;31703	31703		4	9606
IEITSLLPSR	0	1	Unmodified	1127.655	0.65502388	1698	Q8NFH3	NUP43	Nucleoporin Nup43	yes	yes	0	0	0	12	3.46						1								3			19.296	19.296	2	0.0020971	14734	DP690-14	135.79	71.526			NaN	NaN	NaN	0	0	Median	27172000	0	27172000	6432	1698	6034	12920;12921;12922;12923	31704;31705;31706;31707;31708	31704		5	9606
IELCAMSEKQEQLYLGLFNR	1	1	Unmodified	2441.2083	0.20830158	2121	Q9H4L7	SMARCAD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	yes	yes	0	0	1	13	0													1				18.04	18.04	4	0.024897	12878	DP690-13	47.09	13.023			0.97412	1.1519	NaN	1	0	Median	49791000	21136000	28655000	6433	2121	6035	12924	31709;31710	31709		2	9606
IELFADVVPK	1	0	Unmodified	1129.6383	0.63831118	178	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	yes	yes	0	0	0	16	0																1	19.609	19.609	2	0.015356	14248	DP690-16	76.17	15.382			1.0199	1.191	NaN	1	0	Median	5320700	2892000	2428700	6434	178	6036	12925	31711	31711		1	9606
IELFVGGELIDPADDRK	1	1	Unmodified	1885.9785	0.97854286	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	1	2	0		1															19.594	19.594	3	0.0052155	13123	DP690-2	63.681	63.681			0.96082	0.94583	NaN	1	0	Median	1661400	808300	853090	6435	1803	6037	12926	31712	31712		1	9606
IELKGIDFK	2	0	Unmodified	1061.6121	0.61209643	57	CON__Q9U6Y5			yes	yes	0	0	1	6.33	0.943					1		2										15.901	15.901	2;3	0.010044	9393	DP690-7	104.2	51.922		+	NaN	NaN	NaN	0	0	Median	109000000	57587000	51415000	6436	57	6038	12927;12928;12929	31713;31714;31715;31716	31715		4	
IELKGIDFKEDGNILGHK	3	0	Unmodified	2025.0895	0.089490294	57	CON__Q9U6Y5			yes	yes	0	0	2	7	0							2										16.446	16.446	4;5	0.0016846	10126	DP690-7	86.016	57.077		+	0.044763	0.049202	13.546	2	0	Median	526600000	500250000	26347000	6437	57	6039	12930;12931	31717;31718;31719;31720	31720		4	
IELLGSYDPQK	1	0	Unmodified	1261.6554	0.65541781	577	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	yes	yes	0	0	0	8	0								1									17.234	17.234	2	0.00014476	10623	DP690-8	124.92	66.107			0.88013	0.99692	NaN	1	0	Median	9702400	5367400	4335000	6438	577	6040	12932	31721;31722;31723;31724	31724		4	9606
IELPELFDR	0	1	Unmodified	1130.5972	0.59717465	2452	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	13	0													1				20.558	20.558	2	0.001201	16131	DP690-13	123.72	61.174			0.68098	0.83891	NaN	1	0	Median	18191000	10300000	7891200	6439	2452	6041	12933	31725;31726;31727;31728;31729	31726		5	9606
IELYQILK	1	0	Unmodified	1018.6063	0.60628277	953	P61812	TGFB2	Transforming growth factor beta-2;Latency-associated peptide	yes	yes	0	0	0	13	0													1				19.366	19.366	2	0.04598	14518	DP690-13	132.57	61.271			1.022	1.183	NaN	1	0	Median	45929000	24458000	21471000	6440	953	6042	12934	31730	31730		0	9606
IENMDTFSNLLYVR	0	1	Oxidation (M)	1729.8345	0.83452116	2362	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	1	0	12	0												1					20.057	20.057	2	0.053484	15920	DP690-12	86.463	26.065			NaN	NaN	NaN	0	0	Median	0	0	0	6441	2362	6043	12935	31731	31731		1	9606
IENVETLVLQAPK	1	0	Unmodified	1452.8188	0.81879474	310	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	11	0											1						19.148	19.148	2	9.9183E-05	15412	DP690-11	137.46	107.65			0.66029	0.79701	NaN	1	0	Median	52028000	31973000	20055000	6442	310	6044	12936	31732	31732		1	9606
IENVPTGPNNKPK	2	0	Unmodified	1406.7518	0.75177781	178	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	yes	yes	0	0	1	16	0																1	10.354	10.354	3	0.0026022	2812	DP690-16	80.312	80.312			0.54798	0.62584	NaN	1	0	Median	15141000	8628300	6513000	6443	178	6045	12937	31733;31734	31733		2	9606
IEPGVDPDDTYNETPYEK	1	0	Unmodified	2080.9113	0.91131074	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	4	0				1													15.768	15.768	2	3.2746E-11	9565	DP690-4	170.95	156.16			0.57076	0.61474	NaN	1	0	Median	6448600	4066400	2382200	6444	2116	6046	12938	31735;31736;31737;31738	31737		4	9606
IEPSINHILSTR	0	1	Unmodified	1378.7569	0.75686319	211	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	3	0			1														15.556	15.556	3	0.048949	9528	DP690-3	48.115	27.337			1.1914	1.3243	NaN	1	0	Median	5795600	2410800	3384700	6445	211	6047	12939	31739	31739		1	9606
IEQHYFEDR	0	1	Unmodified	1235.5571	0.55710075	255	O75431	MTX2	Metaxin-2	yes	yes	0	0	0	15	0															1		12.42	12.42	3	0.044012	5264	DP690-15	59.931	28.297			0.80026	0.92804	NaN	1	0	Median	28491000	16713000	11779000	6446	255	6048	12940	31740	31740		1	9606
IEQIQCYSAK	1	0	Unmodified	1238.5965	0.59652272	867	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	11	0											1						13.08	13.08	2	0.0078991	6539	DP690-11	123.21	54.421			NaN	NaN	NaN	0	0	Median	0	0	0	6447	867	6049	12941	31741	31741		1	9606
IEQLQNHENEDIYK	1	0	Unmodified	1771.8377	0.83769228	97	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	9.33	3.77				1								2					12.982	12.982	2;3	2.4598E-05	6170	DP690-12	174.72	136.08			0.85417	0.98461	40.67	2	0	Median	26419000	14730000	11688000	6448	97	6050	12942;12943;12944	31742;31743;31744;31745;31746;31747	31742		6	9606
IERPVTVFLQLK	1	1	Unmodified	1441.8657	0.86568536	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	1	3	0			1														17.837	17.837	3	0.011185	12432	DP690-3	68.463	38.914			0.88812	0.985	NaN	1	0	Median	13813000	5888500	7924300	6449	1076	6051	12945	31748	31748		1	9606
IESEGLLSLTTQLVK	1	0	Unmodified	1629.9189	0.91890272	1773	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	14	0														1			21.777	21.777	2	1.7419E-14	17867	DP690-14	220.5	220.5			0.82368	0.99843	NaN	1	0	Median	33194000	18129000	15065000	6450	1773	6052	12946	31749;31750;31751	31751		3	9606
IESILMSLPLTAR	0	1	Oxidation (M)	1458.8116	0.81160087	680	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	1	0	6	0						1											20.513	20.513	2	0.0014026	14678	DP690-6	104.82	79.948			0.80431	0.92252	NaN	1	0	Median	7898300	3598300	4300000	6451	680	6053	12947	31752	31752	983	1	9606
IESLSSQLSNLQK	1	0	Unmodified	1445.7726	0.77257283	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					17.082	17.082	2	1.1347E-10	11916	DP690-12	299.28	254.3			0.84719	0.92588	NaN	1	0	Median	274830000	146740000	128090000	6452	544	6054	12948	31753;31754;31755;31756;31757;31758	31755		6	9606
IETIEVMEDR	0	1	Oxidation (M)	1249.586	0.58601761	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	1	0	10	4						1								1			13.885	13.885	2	0.00040288	7266	DP690-14	126.07	86.023			0.86717	0.99233	1.9143	2	0	Median	260710000	132280000	128420000	6453	848	6055	12949;12950	31759;31760;31761;31762;31763	31759	1275	5	9606
IETIEVMEDR	0	1	Unmodified	1233.5911	0.59110299	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	14	0														1			16.274	16.274	2	0.00012069	10647	DP690-14	148.52	116.3			0.88566	1.0143	NaN	1	0	Median	243140000	119510000	123630000	6454	848	6055	12951	31764;31765;31766;31767	31764		4	9606
IETLDPALIRPGR	0	2	Unmodified	1449.8304	0.83036248	965	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	1	4	0				1													16.127	16.127	3	3.416E-05	10045	DP690-4	124.42	106.76			1.1183	1.1717	NaN	1	0	Median	18283000	9304600	8978300	6455	965	6056	12952	31768;31769;31770;31771	31770		4	9606
IETNENNLESAK	1	0	Unmodified	1360.647	0.64703797	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	12	0												1					11.632	11.632	2	0.00015206	4350	DP690-12	202.2	202.2			0.72785	0.86849	NaN	1	0	Median	68514000	37251000	31263000	6456	1131	6057	12953	31772;31773;31774;31775;31776;31777	31776		6	9606
IETSCSLLEQTQPATPSLWK	1	0	Unmodified	2288.1358	0.13584814	231	O60934	NBN	Nibrin	yes	yes	0	0	0	11	0											1						19.638	19.638	2	9.1792E-05	16094	DP690-11	156.6	115.37			NaN	NaN	NaN	0	0	Median	8927300	8927300	0	6457	231	6058	12954	31778	31778		1	9606
IETSINLAWTAGSNNTR	0	1	Unmodified	1846.9173	0.91733959	2433	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	14	0														1			18.166	18.166	2	4.0286999999999995E-19	13235	DP690-14	209.19	157.58			NaN	NaN	NaN	0	0	Median	12340000	0	12340000	6458	2433	6059	12955	31779;31780	31779		2	9606
IEVEQALAHPYLEQYYDPSDEPIAEAPFK	1	0	Unmodified	3361.6031	0.60305447	610	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	6	0						1											20.932	20.932	3	0.0053821	15078	DP690-6	66.027	42.965			NaN	NaN	NaN	0	0	Median	2644400	2644400	0	6459	610	6060	12956	31781	31781		1	9606
IEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPK	2	0	Oxidation (M)	4581.1461	0.14614464	610	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	1	1	6	0						1											22.438	22.438	4	1.6028E-06	16702	DP690-6	64.936	52.537			0.58338	0.60308	NaN	1	0	Median	4545700	2526200	2019500	6460	610	6061	12957	31782;31783;31784	31782	848	3	9606
IEVGDVNPSETQYISEPK	1	0	Unmodified	2003.9688	0.96876604	1572	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	11	0											1						17.22	17.22	2	0.03704	12598	DP690-11	93.958	49.394			NaN	NaN	NaN	0	0	Median	0	0	0	6461	1572	6062	12958	31785	31785		1	9606
IEVIEIMTDR	0	1	Oxidation (M)	1233.6275	0.6274885	437	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	11.3	3.77						1								2			17.333	17.333	2	0.0012361	10773	DP690-14	111.61	54.429			0.86778	0.99044	6.3044	2	0	Median	317880000	183140000	134740000	6462	437	6063	12959;12960;12961	31786;31787;31788;31789;31790;31791;31792	31788	506	7	9606
IEVIEIMTDR	0	1	Unmodified	1217.6326	0.63257388	437	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	14	0														1			19.241	19.241	2	8.2143E-05	14613	DP690-14	233.57	174.78			0.91005	1.0335	NaN	1	0	Median	287480000	149430000	138050000	6463	437	6063	12962	31793;31794;31795;31796	31794		4	9606
IEVLQQHENEDIYK	1	0	Unmodified	1756.8632	0.86317875	92	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	0	0	8	4				1								1					14.305	14.305	3	0.0086877	7679	DP690-4	66.708	47.876			1.3055	1.4081	NaN	1	0	Median	7265500	3114600	4150900	6464	92	6064	12963;12964	31797;31798	31798		2	9606
IEVPLYSLLEQTHLK	1	0	Unmodified	1781.9927	0.99273636	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	7	4			1								1						21.269	21.269	3	3.772E-06	16618	DP690-3	171.36	153.66			0.95764	1.0982	22.379	2	0	Median	40992000	21927000	19065000	6465	1778	6065	12965;12966	31799;31800;31801;31802;31803;31804	31803		6	9606
IEVQDTSGGTTALRPSASTQALSSSVSSSK	1	1	Unmodified	2951.4684	0.4683519	1355	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	1	7.75	2.77			1						2	1							15.291	15.291	3	2.0765E-09	9031	DP690-3	143.08	118.18			0.99755	1.1064	NaN	1	0	Median	49008000	31055000	17953000	6466	1355	6066	12967;12968;12969;12970	31805;31806;31807;31808;31809;31810;31811	31807		7	9606
IEVVNMLAPYAVFDIVR	0	1	Oxidation (M)	1964.0441	0.044120006	257	O75477	ERLIN1	Erlin-1	yes	yes	0	1	0	14	0														1			23.117	23.117	2	0.0050993	19512	DP690-14	78.401	53.976			0.51598	0.64741	NaN	1	0	Median	4774500	2617600	2156800	6467	257	6067	12971	31812;31813	31812	260	2	9606
IEWLESHQDADIEDFKAK	2	0	Unmodified	2173.0328	0.032763276	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	4	0				2													16.756	16.756	3;4	2.4434E-05	10822	DP690-4	123.4	123.4			1.642	1.7023	46.429	2	0	Median	43966000	14533000	29433000	6468	462	6068	12972;12973	31814;31815;31816	31815		3	9606
IEYDCELVPR	0	1	Unmodified	1292.6071	0.60708741	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	11.1	3.22				1					1		2	1	1	1	1		16.452	16.452	2	2.6799E-05	10413	DP690-4	168.26	125.97			0.81425	0.95834	10.451	5	0	Median	2721900000	1529799999.9999998	1192100000	6469	2298	6069	12974;12975;12976;12977;12978;12979;12980;12981	31817;31818;31819;31820;31821;31822;31823;31824;31825;31826;31827;31828;31829;31830;31831;31832;31833;31834;31835;31836;31837	31832		21	9606
IEYNDQNDGSCDVK	1	0	Unmodified	1655.6733	0.67332907	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	8	3.54		1							1	1	1						12.074	12.074	2	7.1752E-14	5227	DP690-10	218.15	198.54			0.8662	0.98125	9.1631	4	0	Median	317070000	170730000	146350000	6470	250	6070	12982;12983;12984;12985	31838;31839;31840;31841;31842;31843;31844;31845;31846;31847;31848;31849;31850;31851;31852;31853;31854	31838		17	9606
IEYQFFEDR	0	1	Unmodified	1245.5666	0.5666028	2267	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	2	0		1															18.031	18.031	2	0.0050871	11372	DP690-2	99.442	40.524			1.3666	1.4055	NaN	1	0	Median	3753200	1574000	2179200	6471	2267	6071	12986	31855;31856	31855		2	9606
IFALLAGKPVWQLSEK	2	0	Unmodified	1799.0345	0.034541598	867	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	1	11	0											1						19.998	19.998	3	0.00053519	16626	DP690-11	91.355	71.686			0.83503	0.99333	NaN	1	0	Median	36272000	20129000	16143000	6472	867	6072	12987	31857;31858;31859	31858		3	9606
IFANTPDSGCVLGMR	0	1	Oxidation (M)	1652.7651	0.76506139	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	1	0	3	0			1														16.031	16.031	2	0.0080111	10012	DP690-3	77.74	50.259			0.8748	1.0035	NaN	1	0	Median	15693000	8510300	7183000	6473	415	6073	12988	31860;31861;31862;31863;31864	31862	460	5	9606
IFAPNHVVAK	1	0	Unmodified	1094.6237	0.62366417	1095	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	15	0															2		11.561	11.561	2;3	0.0024138	4117	DP690-15	86.136	70.521			0.94471	1.1056	4.0429	2	0	Median	21152000	10830000	10322000	6474	1095	6074	12989;12990	31865;31866;31867;31868;31869;31870;31871	31865		7	9606
IFAQDGEGQR	0	1	Unmodified	1119.5309	0.530886	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	6.25	4.26		2								1	1						11.474	11.474	2	0.00013238	4459	DP690-10	138.54	103.44			0.85216	1.0028	12.575	2	0	Median	426760000	235110000	191650000	6475	250	6075	12991;12992;12993;12994	31872;31873;31874;31875;31876;31877;31878;31879;31880;31881;31882;31883	31876		12	9606
IFCCHGGLSPDLQSMEQIR	0	1	Oxidation (M)	2263.0184	0.018392316	963;683;964	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	1	0	10	4						1								1			15.535	15.535	3	7.1803E-05	9642	DP690-14	112.91	87.729			2.0778	2.3916	139.77	2	0	Median	145430000	70044000	75390000	6476	963;964;683	6076	12995;12996	31884;31885;31886;31887	31885	986	4	9606
IFCCHGGLSPDLQSMEQIR	0	1	Unmodified	2247.0235	0.023477694	963;683;964	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	14	0														1			17.756	17.756	3	1.7427E-12	12702	DP690-14	176.94	163.88			0.59237	0.68343	NaN	1	0	Median	209870000	130670000	79200000	6477	963;964;683	6076	12997	31888;31889	31889		2	9606
IFDLDGDECLSHEEFLGVLK	1	0	Unmodified	2335.1042	0.10421366	1629	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	yes	yes	0	0	0	14	0														1			21.422	21.422	3	0.011309	17346	DP690-14	94.856	54.342			NaN	NaN	NaN	0	0	Median	7300100	7300100	0	6478	1629	6077	12998	31890;31891	31890		2	9606
IFEDIPTLEDLAETLKK	2	0	Unmodified	1974.0561	0.05612448	1367	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	1	11	0											1						22.912	22.912	3	0.00042575	20360	DP690-11	113.11	86.669			NaN	NaN	NaN	0	0	Median	28974000	28974000	0	6479	1367	6078	12999	31892;31893;31894	31893		3	9606
IFEGMPVTFTCR	0	1	Oxidation (M)	1472.6792	0.67920649	1758	Q8WX93	PALLD	Palladin	yes	yes	0	1	0	7	4			1								1						16.793	16.793	2	0.00026705	11978	DP690-11	123.11	99.082			0.66438	0.77143	10.484	2	0	Median	154870000	81576000	73294000	6480	1758	6079	13000;13001	31895;31896;31897;31898;31899;31900	31897	2328	6	9606
IFEGMPVTFTCR	0	1	Unmodified	1456.6843	0.68429187	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	11	0											1						19.227	19.227	2	8.3581E-05	15497	DP690-11	145.25	106.23			0.80467	0.92489	NaN	1	0	Median	193740000	109440000	84296000	6481	1758	6079	13002	31901;31902;31903	31901		3	9606
IFEGTNDILR	0	1	Unmodified	1176.6139	0.61388734	800	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1													17.022	17.022	2	0.0028438	11141	DP690-4	96.668	50.539			0.76527	0.87847	NaN	1	0	Median	20227000	10786000	9440900	6482	800	6080	13003	31904;31905	31904		2	9606
IFEMLEGVQGPTAVR	0	1	Oxidation (M)	1661.8447	0.84469192	448	Q8NHU0;Q5HYN5;Q5DJT8;P0DMV2;P0DMV1;P0DMV0;P0DMU9;P0DMU8;P0DMU7	CT45A3;CT45A1;CT45A2;CT45A9;CT45A8;CT45A7;CT45A10;CT45A5;CT45A6	Cancer/testis antigen family 45 member A3;Cancer/testis antigen family 45 member A1;Cancer/testis antigen family 45 member A2;Cancer/testis antigen family 45 member A9;Cancer/testis antigen family 45 member A8;Cancer/testis antigen family 45 member A7;Cancer/testis antigen family 45 member A10;Cancer/testis antigen family 45 member A5;Cancer/testis antigen family 45 member A6	yes	no	0	1	0	15	0															1		17.598	17.598	2	1.4967E-14	12107	DP690-15	225.55	225.55			0.68427	0.78123	NaN	1	0	Median	42772000	25588000	17183000	6483	448	6081	13004	31906;31907;31908	31908	510	3	9606
IFEYETQR	0	1	Unmodified	1084.5189	0.51892433	817	P50402	EMD	Emerin	yes	yes	0	0	0	14	0														1			13.995	13.995	2	0.072121	7518	DP690-14	89.142	41.399			NaN	NaN	NaN	0	0	Median	47579000	47579000	0	6484	817	6082	13005	31909	31909		1	9606
IFFAGDTIPK	1	0	Unmodified	1107.5964	0.59644637	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							17.767	17.767	2	0.049505	13678	DP690-10	64.42	24.353			0.96533	1.1138	NaN	1	0	Median	368490000	151760000	216730000	6485	250	6083	13006	31910	31910		1	9606
IFGPIWNR	0	1	Unmodified	1001.5447	0.54468557	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	4	0				1													18.208	18.208	2	0.020311	12681	DP690-4	170.96	131.74			0.85084	0.93161	NaN	1	0	Median	52753000	27504000	25249000	6486	469	6084	13007	31911	31911		0	9606
IFHAPNASAPSSSLSTFK	1	0	Unmodified	1860.937	0.9370124	2104	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	7	0							1										21.756	21.756	3	0.060256	16628	DP690-7	21.881	5.4823			0.71564	0.77697	NaN	1	0	Median	22902000	13807000	9094900	6487	2104	6085	13008	31912	31912		1	9606
IFHELTQTDK	1	0	Unmodified	1230.6245	0.62445203	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	9.2	3.25			1						1		2	1					12.133	12.133	2;3	3.1688E-05	5157	DP690-11	140.17	73.61			0.97706	0.9926	29.98	5	0	Median	1033199999.9999999	522570000	510630000	6488	470	6086	13009;13010;13011;13012;13013	31913;31914;31915;31916;31917;31918;31919;31920;31921;31922;31923;31924	31914		12	9606
IFHTVTTTDDPVIR	0	1	Unmodified	1613.8413	0.8413211	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	12	0												1					14.513	14.513	3	1.5897E-05	8368	DP690-12	123.28	88.999			0.8127	0.86986	NaN	1	0	Median	569530000	305460000	264070000	6489	154	6087	13014	31925;31926;31927;31928	31928		4	9606
IFHTVTTTDDPVIRK	1	1	Unmodified	1741.9363	0.93628412	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	1	12	0												1					12.924	12.924	4	0.0011994	6095	DP690-12	77.192	62.353			0.81673	0.93164	NaN	1	0	Median	141000000	78340000	62657000	6490	154	6088	13015	31929;31930;31931;31932	31931		4	9606
IFLLGLADNEAAIVQAESEETKER	1	1	Unmodified	2645.3548	0.3548257	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	1	11.5	0.5											1	1					21.544	21.544	3	2.1139E-11	17774	DP690-12	161.02	137.15			0.84654	1.0629	7.1209	2	0	Median	83619000	45326000	38293000	6491	2342	6089	13016;13017	31933;31934;31935;31936;31937	31934		5	9606
IFLLTNNNLLLADQK	1	0	Unmodified	1728.9774	0.97742065	189	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	11	0											1						21.201	21.201	2	0.00143	18255	DP690-11	92.19	69.628			1.079	1.3245	NaN	1	0	Median	20685000	9133700	11551000	6492	189	6090	13018	31938;31939	31939		2	9606
IFNFYPR	0	1	Unmodified	955.49159	0.49158736	104	O14531	DPYSL4	Dihydropyrimidinase-related protein 4	yes	yes	0	0	0	4	0				1													17.695	17.695	2	0.070029	12050	DP690-4	99.511	20.057			NaN	NaN	NaN	0	0	Median	2210300	2210300	0	6493	104	6091	13019	31940	31940		1	9606
IFNLYPR	0	1	Unmodified	921.50724	0.50723743	1260;1259	Q14194;Q14117;Q14195	CRMP1;DPYS;DPYSL3	Dihydropyrimidinase-related protein 1;Dihydropyrimidinase;Dihydropyrimidinase-related protein 3	no	no	0	0	0	8	4				1								1					17.139	17.139	2	0.010578	11276	DP690-4	126.04	70.596			NaN	NaN	NaN	0	0	Median	32551000	32551000	0	6494	1259;1260	6092	13020;13021	31941;31942;31943;31944	31943		4	9606
IFNSDELIHFR	0	1	Unmodified	1389.7041	0.70409934	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								17.896	17.896	3	0.00027083	12323	DP690-9	108.47	66.469			0.70661	0.88438	NaN	1	0	Median	8731200	4650900	4080200	6495	2217	6093	13022	31945;31946;31947;31948	31946		4	9606
IFQGNVHNFEK	1	0	Unmodified	1331.6622	0.66223452	1839	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	14	0														1			12.851	12.851	3	0.002658	5880	DP690-14	105.2	74.591			NaN	NaN	NaN	0	0	Median	48511000	0	48511000	6496	1839	6094	13023	31949;31950	31950		2	9606
IFQNAPTDPTQDFSTQVAK	1	0	Unmodified	2107.0222	0.02219859	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	3	0			1														17.184	17.184	2	1.4666E-22	11496	DP690-3	220.37	189.42			0.72613	0.76058	NaN	1	0	Median	52364000	32535000	19829000	6497	746	6095	13024	31951;31952;31953;31954	31954		4	9606
IFQNLDGALDEVVLK	1	0	Unmodified	1672.9036	0.903587	1097	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	7	4			1								1						21.527	21.527	2	1.252E-05	18614	DP690-11	142.1	105.51			0.87645	1.0622	NaN	1	0	Median	42413000	22920000	19493000	6498	1097	6096	13025;13026	31955;31956;31957;31958;31959	31956		5	9606
IFRDGEEAGAYDGPR	0	2	Unmodified	1651.759	0.75904803	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	1	4	0				1													13.145	13.145	3	0.010556	6128	DP690-4	63.546	46.482			0.91996	0.96392	NaN	1	0	Median	18170000	9335700	8834300	6499	623	6097	13027	31960;31961	31960		2	9606
IFSAEIIYHLFDAFTK	1	0	Unmodified	1913.9927	0.99273636	228	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	10	0										1							25.486	25.486	3	0.00049403	23596	DP690-10	90.725	60.653			0.98191	1.19	NaN	1	0	Median	5482800	2569800	2913000	6500	228	6098	13028	31962;31963;31964;31965;31966	31964		5	9606
IFSGGDQSFSHYSSPQNCGPPDDFR	0	1	Unmodified	2801.1776	0.17760639	1416	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	3	0			1														16.497	16.497	3	0.047395	10729	DP690-3	52.321	25.286			NaN	NaN	NaN	0	0	Median	3466000	3466000	0	6501	1416	6099	13029	31967	31967		1	9606
IFSGSSHQDLSQK	1	0	Unmodified	1432.6947	0.69465686	929	P60891;P21108	PRPS1;PRPS1L1	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3	yes	no	0	0	0	6	0						1											10.694	10.694	3	7.0257E-05	3140	DP690-6	118.76	88.194			0.93658	1.0622	NaN	1	0	Median	19574000	10076000	9497400	6502	929	6100	13030	31968;31969;31970;31971;31972	31970		5	9606
IFSHAYFHHR	0	1	Unmodified	1313.6418	0.64177385	2459	Q9Y3A3	MOB4	MOB-like protein phocein	yes	yes	0	0	0	15	0															1		10.463	10.463	3	0.014066	2886	DP690-15	72.643	13.378			0.87005	1.0121	NaN	1	0	Median	26314000	14210000	12104000	6503	2459	6101	13031	31973	31973		1	9606
IFSLLVPTALPLLR	0	1	Unmodified	1551.9752	0.97523581	1107	Q03518	TAP1	Antigen peptide transporter 1	yes	yes	0	0	0	12	0												1					24.618	24.618	2	0.00024532	21168	DP690-12	114.89	110.25			0.67427	0.8206	NaN	1	0	Median	2154700	1384800	769900	6504	1107	6102	13032	31974;31975;31976;31977	31975		4	9606
IFTMAEVYGIR	0	1	Oxidation (M)	1314.6642	0.66420836	1908	Q96P70	IPO9	Importin-9	yes	yes	0	1	0	3	0			1														17.184	17.184	2	0.0019057	11528	DP690-3	105.4	105.4			0.86409	0.98509	NaN	1	0	Median	12750000	7375100	5374600	6505	1908	6103	13033	31978;31979	31978	2449	2	9606
IFTQLEEFR	0	1	Unmodified	1181.6081	0.60807369	202	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	10	0										2							18.233	18.233	2	0.010799	14125	DP690-10	111.95	49.484			NaN	NaN	NaN	0	0	Median	45056000	45056000	0	6506	202	6104	13034;13035	31980;31981;31982	31980		3	9606
IFTSIGEDYDER	0	1	Unmodified	1443.6518	0.65178899	660	P35232	PHB	Prohibitin	yes	yes	0	0	0	15	0															1		16.586	16.586	2	0.00023214	10816	DP690-15	171.33	135.39			0.86161	0.93672	NaN	1	0	Median	152530000	80047000	72488000	6507	660	6105	13036	31983;31984;31985;31986	31986		4	9606
IFVFEPPPGVK	1	0	Unmodified	1228.6856	0.68559572	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								18.843	18.843	2	0.001796	13406	DP690-9	99.802	52.604			0.64504	0.81551	NaN	1	0	Median	18480000	11800000	6679700	6508	1264	6106	13037	31987;31988	31987		2	9606
IFVGGIKEDTEEHHLRDYFEQYGK	2	1	Unmodified	2909.3984	0.39842185	437	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	2	14	0														1			17.146	17.146	5	0.0024144	11859	DP690-14	58.796	34.385			0.73884	0.88929	NaN	1	0	Median	219160000	116820000	102340000	6509	437	6107	13038	31989	31989		1	9606
IFVGGIKEDTEEYNLR	1	1	Unmodified	1881.9472	0.94724273	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	14	0														3			16.474	16.474	2;3	2.3545E-17	10999	DP690-14	199.4	146.28			0.88456	0.94649	NaN	1	0	Median	420680000	233590000	187090000	6510	848	6108	13039;13040;13041	31990;31991;31992;31993;31994;31995	31994		6	9606
IFVGGIKEDTEEYNLRDYFEK	2	1	Unmodified	2564.2435	0.24348433	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	2	14	0														2			18.539	18.539	3;4	6.0399E-06	13746	DP690-14	127.53	88.867			0.85903	1.0339	NaN	1	0	Median	170240000	82217000	88022000	6511	848	6109	13042;13043	31996;31997;31998;31999	31999		4	9606
IFVGGIPHNCGETELR	0	1	Unmodified	1797.8832	0.88320269	1845	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	0	0	13	0													2				15.279	15.279	2;3	5.2908E-05	9141	DP690-13	119.45	90.634			0.91683	1.0794	5.177	2	0	Median	243260000	122410000	120840000	6512	1845	6110	13044;13045	32000;32001;32002	32001		3	9606
IFVGGLSPDTPEEK	1	0	Unmodified	1487.7508	0.75077476	1243	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	11	3.56						1							1	1			16.6	16.6	2	7.8971E-05	11005	DP690-13	189.57	146.86			0.76714	0.87974	10.375	3	0	Median	268030000	162100000	105920000	6513	1243	6111	13046;13047;13048	32003;32004;32005;32006;32007;32008;32009	32004		7	9606
IFVGNVSAACTSQELR	0	1	Unmodified	1750.8672	0.86721827	1910	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	11.5	0.5											1	1					16.484	16.484	2	1.1719E-25	11122	DP690-12	212.1	141.55			NaN	NaN	NaN	0	0	Median	60792000	60792000	0	6514	1910	6112	13049;13050	32010;32011;32012	32011		3	9606
IFYHPETTQLMILSASEATVK	1	0	Unmodified	2378.2192	0.21918384	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	11	0											1						19.714	19.714	3	1.2525E-06	16217	DP690-11	133.35	85.735			NaN	NaN	NaN	0	0	Median	37657000	37657000	0	6515	829	6113	13051	32013;32014	32014		2	9606
IFYHPETTQLMILSASEATVK	1	0	Oxidation (M)	2394.2141	0.21409846	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	1	0	12	0												1					18.492	18.492	3	2.2244E-05	13909	DP690-12	123	108.68			0.86669	1.0341	NaN	1	0	Median	66835000	37686000	29149000	6516	829	6113	13052	32015;32016;32017;32018	32018	1260	4	9606
IFYPEIEEVQALDDTER	0	1	Unmodified	2065.9844	0.9844161	649	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	7.5	0.5							1	1									20.818	20.818	2	4.1385E-13	14437	DP690-8	210.15	210.15			0.73334	0.81289	NaN	1	0	Median	21232000	12155000	9077200	6517	649	6114	13053;13054	32019;32020;32021;32022;32023;32024;32025	32024		7	9606
IGAEVYHNLK	1	0	Unmodified	1142.6084	0.60840804	395	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	5	0					2												12.227	12.227	2;3	0.0019267	4657	DP690-5	81.95	32.528			1.5706	1.5693	1.2027	2	0	Median	52604000	17486000	35118000	6518	395	6115	13055;13056	32026;32027;32028;32029;32030;32031;32032	32026		7	9606
IGDELDSNMELQR	0	1	Oxidation (M)	1534.6933	0.69333623	1134	Q07812	BAX	Apoptosis regulator BAX	yes	yes	0	1	0	13.3	3.77								1								2	14.462	14.462	2	0.015405	7942	DP690-16	99.215	64.683			1.1937	1.4525	NaN	1	0	Median	2769300	1231300	1538000	6519	1134	6116	13057;13058;13059	32033;32034;32035	32033	1756	3	9606
IGDFGLVTSLK	1	0	Unmodified	1148.6441	0.64412484	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	12	0												1					19.152	19.152	2	1.3526E-05	14732	DP690-12	192.26	132.24			0.87514	1.0184	NaN	1	0	Median	104300000	55061000	49239000	6520	538	6117	13060	32036;32037;32038;32039	32036		4	9606
IGDFIDVSEGPLIPR	0	1	Unmodified	1626.8617	0.86172219	2263	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	14	0														1			21.113	21.113	2	1.1737E-05	17090	DP690-14	133.05	93.784			1.0172	1.2335	NaN	1	0	Median	28269000	12475000	15794000	6521	2263	6118	13061	32040;32041;32042	32041		3	9606
IGDGMNAYVAYK	1	0	Oxidation (M)	1316.6071	0.60708741	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	1	0	4	0				1													13.823	13.823	2	0.00067671	6960	DP690-4	114.97	89.347			1.012	1.0967	NaN	1	0	Median	26485000	14213000	12272000	6522	1227	6119	13062	32043;32044;32045;32046	32043	1872	4	9606
IGDLQAFQGHGAGNLAGLK	1	0	Unmodified	1865.9748	0.97479489	414	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	11	0											2						16.91	16.91	3	9.4881E-05	12164	DP690-11	126.91	78.564			NaN	NaN	NaN	0	0	Median	31509000	31509000	0	6523	414	6120	13063;13064	32047;32048;32049	32047		3	9606
IGDQEFDHLPALLEFYK	1	0	Unmodified	2034.0098	0.0098429899	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	8.11	3.21						5	1	1						2			21.993	21.993	2;3	8.1016E-10	16086	DP690-6	183.28	145.91			0.77971	0.86686	4.5656	6	0	Median	528250000	299050000	229200000	6524	753	6121	13065;13066;13067;13068;13069;13070;13071;13072;13073	32050;32051;32052;32053;32054;32055;32056;32057;32058;32059;32060;32061;32062;32063;32064;32065;32066;32067;32068;32069;32070;32071;32072;32073;32074;32075;32076;32077	32067		28	9606
IGDSSQGDNNLQK	1	0	Unmodified	1374.6375	0.63753591	1115	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	3	0			1														10.51	10.51	2	0.031979	2780	DP690-3	93.096	49.326			NaN	NaN	NaN	0	0	Median	0	0	0	6525	1115	6122	13074	32078	32078		1	9606
IGDVVGSSGANQQTSGK	1	0	Unmodified	1603.7802	0.7801774	2430	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	6	3.56			1	1							1						11.405	11.405	2	1.3265E-08	3872	DP690-3	178.22	159.41			1.1264	1.2397	19.742	3	0	Median	24836000	11427000	13409000	6526	2430	6123	13075;13076;13077	32079;32080;32081;32082;32083;32084;32085;32086;32087;32088;32089;32090;32091;32092	32085		14	9606
IGEEFLTDLSQLK	1	0	Unmodified	1491.7821	0.78207489	467	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	3	0			1														21.993	21.993	2	0.007457	17488	DP690-3	77.64	59.306			1.004	1.0457	NaN	1	0	Median	2160000	1154400	1005500	6527	467	6124	13078	32093;32094	32093		2	9606
IGEEFLTDLSQLKK	2	0	Unmodified	1619.877	0.8770379	467	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	1	3	0			1														19.594	19.594	3	0.0011664	14639	DP690-3	84.734	67.67			0.80405	0.87749	NaN	1	0	Median	7990300	3717800	4272500	6528	467	6125	13079	32095;32096;32097	32096		3	9606
IGEEQSAEDAEDGPPELLFIHGGHTAK	1	0	Unmodified	2846.3359	0.33588117	1360	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	13	0													1				17.155	17.155	3	0.045368	11752	DP690-13	58.47	31.063			NaN	NaN	NaN	0	0	Median	7922200	7922200	0	6529	1360	6126	13080	32098	32098		1	9606
IGEEQSPEDAEDGPPELLFIHGGHTAK	1	0	Unmodified	2872.3515	0.35153123	1142	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	13	0													1				17.159	17.159	3	1.2566E-11	11737	DP690-13	151.42	125.84			0.57059	0.65996	NaN	1	0	Median	53332000	29615000	23717000	6530	1142	6127	13081	32099;32100;32101	32101		3	9606
IGEGSTGIVCIATVR	0	1	Unmodified	1531.8028	0.8028271	350	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	0	0	12	0												1					17.288	17.288	2	0.0029919	12322	DP690-12	85.554	57.35			0.89778	1.0671	NaN	1	0	Median	62733000	34693000	28039000	6531	350	6128	13082	32102;32103	32102		2	9606
IGELFSK	1	0	Unmodified	792.43815	0.43815481	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	10	0										1							14.989	14.989	2	0.0021254	9610	DP690-10	138.85	35.564			NaN	NaN	NaN	0	0	Median	24810000	24810000	0	6532	1046	6129	13083	32104	32104		1	9606
IGEVALAVIFDVASIILGSK	1	0	Unmodified	2014.1714	0.17142901	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	10	0										1							30.29	30.29	2	0.046067	27595	DP690-10	87.566	46.457			NaN	NaN	NaN	0	0	Median	0	0	0	6533	2483	6130	13084	32105	32105		1	9606
IGEVDVEQHTLAK	1	0	Unmodified	1437.7464	0.74635808	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	0	13.7	0.943													2		1		13.431	13.431	2;3	2.2169E-05	6523	DP690-13	167.84	139.98			1.0318	1.146	21.362	2	0	Median	1025299999.9999999	507840000	517450000	6534	491	6131	13085;13086;13087	32106;32107;32108;32109;32110;32111	32108		6	9606
IGFDVVTLSGTR	0	1	Unmodified	1263.6823	0.68230126	1990	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	0	15	0															1		19.188	19.188	2	4.3364E-05	14158	DP690-15	128.35	82.219			0.84514	0.97949	NaN	1	0	Median	28941000	14829000	14111000	6535	1990	6132	13088	32112;32113;32114;32115	32112		4	9606
IGFFNQQYAEQLR	0	1	Unmodified	1612.7998	0.79979063	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	5.67	3.77			2								1						18.927	18.927	2	3.7589E-07	13774	DP690-3	169.65	118.38			NaN	NaN	NaN	0	0	Median	7290100	0	7290100	6536	1687	6133	13089;13090;13091	32116;32117;32118;32119	32117		4	9606
IGFVGFPSVGK	1	0	Unmodified	1106.6124	0.61243078	2436	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	14	0														1			19.064	19.064	2	0.00056465	14382	DP690-14	111.46	86.636			0.83221	1.0016	NaN	1	0	Median	108560000	58613000	49948000	6537	2436	6134	13092	32120;32121;32122;32123	32122		4	9606
IGGADFLVWR	0	1	Unmodified	1132.6029	0.60292873	2448	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	11	0											1						20.544	20.544	2	0.013941	17353	DP690-11	78.149	55.619			1.0035	1.2051	NaN	1	0	Median	26495000	13837000	12657000	6538	2448	6135	13093	32124	32124		1	9606
IGGDAATTVNNSTPDFGFGGQK	1	0	Unmodified	2153.0025	0.0025257806	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	7	4			2								2						17.442	17.442	2	9.6815E-09	13031	DP690-11	175.29	141.75			0.4549	0.4871	NaN	1	0	Median	80799000	10773000	70026000	6539	1798	6136	13094;13095;13096;13097	32125;32126;32127;32128;32129;32130;32131	32126		7	9606
IGGGDTTEHIQTHFESK	1	0	Unmodified	1855.8701	0.87005504	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	10	0										1							12.357	12.357	4	0.0049654	5640	DP690-10	63.546	41.155			0.83321	1.0213	NaN	1	0	Median	165370000	88427000	76948000	6540	103	6137	13098	32132	32132		1	9606
IGGGIDVPVPR	0	1	Unmodified	1078.6135	0.61349341	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	11	0											1						16.255	16.255	2	0.00036648	11242	DP690-11	117.81	79.005			1.0619	1.2553	NaN	1	0	Median	134670000	70478000	64191000	6541	1798	6138	13099	32133;32134;32135;32136;32137	32135		5	9606
IGGIGTVPVGR	0	1	Unmodified	1024.6029	0.60292873	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	11.2	3.6	1				1				1	1	1	1	7	1	1		16.545	16.545	2	2.5729E-06	8437	DP690-14	209.84	151.02			0.87183	0.92193	14.198	12	0	Median	22096000000	11586000000	10509000000	6542	1031;1118	6139	13100;13101;13102;13103;13104;13105;13106;13107;13108;13109;13110;13111;13112;13113;13114	32138;32139;32140;32141;32142;32143;32144;32145;32146;32147;32148;32149;32150;32151;32152;32153;32154;32155;32156;32157;32158;32159;32160;32161;32162;32163;32164;32165;32166;32167;32168;32169;32170;32171;32172;32173;32174;32175;32176;32177;32178;32179;32180;32181;32182;32183	32173		46	9606
IGGQVHAVQALVQLFLER	0	1	Unmodified	1977.116	0.11597982	1551	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	10	0										1							23.981	23.981	3	4.9648E-12	21914	DP690-10	175.51	158.08			0.87871	1.1053	NaN	1	0	Median	10407000	5635300	4771900	6543	1551	6140	13115	32184;32185;32186;32187;32188	32185		5	9606
IGGVQQDTILAEGLHFR	0	1	Unmodified	1852.9795	0.97954591	1948	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	14	0														1			18.643	18.643	3	2.3788E-23	13875	DP690-14	258.96	220.34			0.86461	0.96804	NaN	1	0	Median	381740000	204240000	177500000	6544	1948	6141	13116	32189;32190;32191;32192	32191		4	9606
IGIIGGTGLDDPEILEGR	0	1	Unmodified	1823.9629	0.9628928	1181	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	7	0							1										20.975	20.975	2	1.873E-11	15707	DP690-7	174.46	127.51			0.93362	1.0651	NaN	1	0	Median	21461000	11120000	10341000	6545	1181	6142	13117	32193;32194;32195;32196	32194		4	9606
IGLEEEKLTGDR	1	1	Unmodified	1358.7042	0.70415892	515	P17706	PTPN2	Tyrosine-protein phosphatase non-receptor type 2	yes	yes	0	0	1	13	0													1				13.803	13.803	3	0.0020269	7100	DP690-13	77.597	53.245			1.095	1.3319	NaN	1	0	Median	32118000	16769000	15349000	6546	515	6143	13118	32197;32198	32197		2	9606
IGLETSLR	0	1	Unmodified	887.50763	0.50763136	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	13	0													2				15.013	15.013	2	0.033007	8771	DP690-13	166.05	99.058			1.0145	1.2201	21.955	2	0	Median	154470000	79481000	74993000	6547	2427	6144	13119;13120	32199;32200	32200		0	9606
IGLGGRGGSGGSYGR	0	2	Unmodified	1349.68	0.68000985	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	9.67	4.92				1					1							1	10.856	10.856	3	0.012677	3267	DP690-4	92.457	46.628		+	NaN	NaN	NaN	0	0	Median	193260000	193260000	0	6548	667	6145	13121;13122;13123	32201;32202;32203;32204	32202		4	9606
IGLINDMVR	0	1	Unmodified	1029.5641	0.56410038	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	10	0										1							17.499	17.499	2	0.0094061	13149	DP690-10	114.89	21.699			NaN	NaN	NaN	0	0	Median	26861000	0	26861000	6549	1252	6146	13124	32205	32205		1	9606
IGLINDMVR	0	1	Oxidation (M)	1045.559	0.559015	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	1	0	2	0		1															15.186	15.186	2	0.030159	8016	DP690-2	81.296	37.488			0.86984	0.89435	NaN	1	0	Median	3728100	1840600	1887500	6550	1252	6146	13125	32206	32206	1898	1	9606
IGNLQTDLSDGLR	0	1	Unmodified	1400.726	0.72595699	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	13	3										1						1	17.58	17.58	2	0.00016949	13253	DP690-10	163.84	126.77			0.78035	0.89567	6.753	2	0	Median	460990000	278850000	182140000	6551	250	6147	13126;13127	32207;32208;32209;32210	32208		4	9606
IGNSYFKEEK	2	0	Unmodified	1213.5979	0.59790293	642	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	1	4	0				1													11.712	11.712	3	0.0044194	4280	DP690-4	82.261	59.619			1.1685	1.2051	NaN	1	0	Median	10364000	3705400	6658200	6552	642	6148	13128	32211;32212	32212		2	9606
IGNTGGMLDNILASK	1	0	Oxidation (M)	1518.7712	0.77119262	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	1	0	3	0			1														17.067	17.067	2	0.0052814	11334	DP690-3	84.734	63.946			0.94459	1.008	NaN	1	0	Median	25533000	12765000	12769000	6553	873	6149	13129	32213;32214	32213	1321	2	9606
IGPILDNSTLQSEVKPILEK	2	0	Unmodified	2193.2256	0.22564942	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	1	8	3.27				1				1				1					19.297	19.297	3	4.5296E-18	13819	DP690-4	205.98	184.93			1.1123	1.3273	35.921	3	0	Median	165110000	79055000	86052000	6554	624	6150	13130;13131;13132	32215;32216;32217;32218;32219;32220;32221;32222;32223	32220		9	9606
IGPLGLSPK	1	0	Unmodified	880.5382	0.53820321	621	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	12	4								1								1	15.373	15.373	2	0.014771	8430	DP690-8	84.743	10.328			0.79269	0.85536	11.662	2	0	Median	266210000	151890000	114330000	6555	621	6151	13133;13134	32224;32225;32226;32227	32226		4	9606
IGPYQPNVPVGIDYVIPK	1	0	Unmodified	1968.072	0.072049316	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											1						20.564	20.564	2	9.9306E-10	17291	DP690-11	154.23	127.23			0.58949	0.66738	NaN	1	0	Median	203790000	128390000	75394000	6556	735	6152	13135	32228;32229;32230;32231	32229		4	9606
IGQGYLIK	1	0	Unmodified	890.52255	0.52255314	698	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	9	0									1								14.42	14.42	2	0.038177	7783	DP690-9	101.69	24.317			NaN	NaN	NaN	0	0	Median	18915000	18915000	0	6557	698	6153	13136	32232;32233	32232		2	9606
IGQPTVSYFLK	1	0	Unmodified	1251.6863	0.68632401	2463	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	15	0															1		18.166	18.166	2	0.0056796	12903	DP690-15	86.882	62.006			0.56622	0.66774	NaN	1	0	Median	17180000	11509000	5670500	6558	2463	6154	13137	32234;32235	32234		2	9606
IGQQPQQPGAPPQQDYTK	1	0	Unmodified	1979.9701	0.97010344	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	7	4			1								1						12.603	12.603	2	5.9456E-32	5781	DP690-11	263.89	233.56			0.71107	0.80703	35.693	2	0	Median	99210000	51962000	47248000	6559	1798	6155	13138;13139	32236;32237;32238;32239;32240;32241;32242;32243	32237		8	9606
IGRIEDVTPIPSDSTR	0	2	Unmodified	1754.9163	0.91627696	971	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	16	0																1	15.216	15.216	3	0.0009589	8847	DP690-16	85.619	63.788			0.79308	0.83791	NaN	1	0	Median	67215000	37171000	30044000	6560	971	6156	13140	32244;32245	32244		2	9606
IGRPSETGIIGIIDPECR	0	2	Unmodified	1982.0255	0.025509829	1355	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	1	3	0			1														18.676	18.676	3	0.00080687	13470	DP690-3	82.865	65.002			0.76669	0.79313	NaN	1	0	Median	12240000	6655900	5583900	6561	1355	6157	13141	32246	32246		1	9606
IGRPVHEFMLKPGDLLYFPR	1	2	Oxidation (M)	2400.2776	0.27764219	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	1	2	13	0													2				18.04	18.04	4;5	0.002736	12875	DP690-13	73.809	61.328			0.67921	0.75449	NaN	1	0	Median	144330000	98426000	45906000	6562	1597	6158	13142;13143	32247;32248;32249;32250;32251;32252;32253	32249	2256	7	9606
IGSCTQQDVELHVQK	1	0	Unmodified	1740.8465	0.84648283	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	8	4				1								1					12.761	12.761	3	5.5454E-06	5853	DP690-12	156.2	110.66			0.86555	0.96944	6.3226	2	0	Median	140470000	70785000	69690000	6563	495	6159	13144;13145	32254;32255;32256;32257;32258;32259	32255		6	9606
IGSFGPQEDLLFLR	0	1	Unmodified	1590.8406	0.84059282	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															21.746	21.746	2	0.00013334	15438	DP690-2	120.96	95.892			0.74504	0.76102	NaN	1	0	Median	2861500	1647700	1213700	6564	1179	6160	13146	32260;32261;32262	32261		3	9606
IGSGGFGLIYLAFPTNKPEK	2	0	Unmodified	2108.1306	0.13062683	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	1	13	1												1		1			21.059	21.059	3	0.017844	17246	DP690-12	53.327	22.791			0.72109	0.82798	1.1881	2	0	Median	44252000	24249000	20003000	6565	1589	6161	13147;13148	32263;32264;32265	32263		3	9606
IGSGYDNVDIK	1	0	Unmodified	1179.5772	0.57716749	908	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	11	2									1				1				14.248	14.248	2	0.00011212	7695	DP690-13	135.43	101.34			1.0799	1.2749	41.338	2	0	Median	368400000	196880000	171520000	6566	908	6162	13149;13150	32266;32267;32268;32269;32270;32271	32269		6	9606
IGSSLSYVNTTEEK	1	0	Unmodified	1526.7464	0.74641766	1695	Q8NFA0	USP32	Ubiquitin carboxyl-terminal hydrolase 32	yes	yes	0	0	0	2	0		1															14.463	14.463	2	0.00024771	7038	DP690-2	114.76	85.808			0.96474	0.95018	NaN	1	0	Median	2482000	1082900	1399100	6567	1695	6163	13151	32272;32273;32274;32275	32272		4	9606
IGSTIFGER	0	1	Unmodified	978.51345	0.51344502	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	7	0							3										15.262	15.262	2	0.00070003	8520	DP690-7	139.97	64.781			0.87548	0.91844	NaN	1	0	Median	264340000	118400000	145940000	6568	296	6164	13152;13153;13154	32276;32277;32278;32279;32280	32276		5	9606
IGTNQMAVCAK	1	0	Unmodified	1191.574	0.57401314	1265	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	14	0														1			12.253	12.253	2	7.9109E-05	5013	DP690-14	140.11	98.236			1.1859	1.4378	NaN	1	0	Median	33361000	12473000	20889000	6569	1265	6165	13155	32281;32282	32281		2	9606
IGVAILQR	0	1	Unmodified	868.54944	0.54943659	1461	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	11	0											1						15.89	15.89	2	0.042214	10660	DP690-11	100.07	51.893			NaN	NaN	NaN	0	0	Median	20219000	0	20219000	6570	1461	6166	13156	32283;32284	32284		2	9606
IGVLDEGK	1	0	Unmodified	829.45453	0.45453316	760	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	15	0															1		13.295	13.295	2	0.069457	6312	DP690-15	107.59	34.804			0.93628	1.0006	NaN	1	0	Median	338700000	173880000	164820000	6571	760	6167	13157	32285	32285		0	9606
IGVSSDSGSINPMSEGFK	1	0	Oxidation (M)	1826.8356	0.83564337	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	1	0	10	0										1							15.567	15.567	2	0.0015434	10338	DP690-10	91.62	72.996			1.28	1.5735	NaN	1	0	Median	44710000	22213000	22497000	6572	807	6168	13158	32286;32287	32286	1211	2	9606
IGYSSPQTLADQSSK	1	0	Unmodified	1580.7682	0.76821574	331	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	6	3.56			1	1							1						14.243	14.243	2	2.2651E-05	7491	DP690-4	169.65	145.56			0.66039	0.7992	12.473	3	0	Plateau	81583000	46992000	34591000	6573	331	6169	13159;13160;13161	32288;32289;32290;32291;32292;32293;32294;32295;32296	32294		9	9606
IHAFVQDTTLSEPR	0	1	Unmodified	1612.8209	0.82092001	1644	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	11	0											1						14.606	14.606	3	0.018969	8860	DP690-11	57.425	26.383			NaN	NaN	NaN	0	0	Median	53695000	53695000	0	6574	1644	6170	13162	32297	32297		1	9606
IHALPTGDASK	1	0	Unmodified	1108.5877	0.58767259	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										1							10.584	10.584	2	0.017177	3133	DP690-10	78.556	78.556			0.9651	1.1359	NaN	1	0	Median	283240000	132640000	150600000	6575	1270	6171	13163	32298	32298		1	9606
IHDPQLLTER	0	1	Unmodified	1220.6513	0.65133548	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	9.67	4.03				1								1	1				13.019	13.019	3	0.01066	5918	DP690-4	70.488	39.925			0.97829	1.1534	8.8716	2	0	Median	90532000	65076000	25456000	6576	495	6172	13164;13165;13166	32299;32300;32301;32302;32303;32304;32305	32305		7	9606
IHEDIFDIIDR	0	1	Unmodified	1384.6987	0.69867961	567	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	13	0													2				19.631	19.631	3	0.021959	14978	DP690-13	75.695	43.687			NaN	NaN	NaN	0	0	Median	7694300	7694300	0	6577	567	6173	13167;13168	32306;32307	32307		2	9606
IHEGCEEPATHNALAK	1	0	Unmodified	1775.8261	0.82608174	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	10.6	4.9		2							3	1				1	2	2	10.326	10.326	3;4	2.472E-06	2647	DP690-15	128.73	110.77			0.98726	1.166	44.828	8	0	Median	400610000	193060000	207550000	6578	1075	6174	13169;13170;13171;13172;13173;13174;13175;13176;13177;13178;13179	32308;32309;32310;32311;32312;32313;32314;32315;32316;32317;32318;32319;32320;32321;32322;32323;32324	32312		15	9606
IHETIESINQLK	1	0	Unmodified	1423.7671	0.76709352	1797	Q92925;Q6STE5	SMARCD2;SMARCD3	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3	yes	no	0	0	0	12	0												1					14.245	14.245	3	0.0006579	7992	DP690-12	95.618	76.407			0.86299	1.0154	NaN	1	0	Median	87999000	45284000	42714000	6579	1797	6175	13180	32325;32326;32327	32325		3	9606
IHFGGLIEEDDVILLAAALR	0	1	Unmodified	2164.1892	0.18920434	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											1						24.057	24.057	3	8.3626E-05	21768	DP690-11	91.14	54.483			NaN	NaN	NaN	0	0	Median	1883300	1883300	0	6580	1504	6176	13181	32328	32328		1	9606
IHFPLATYAPVISAEK	1	0	Unmodified	1755.956	0.95595693	1032;1521;1977;452;1033	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;Q9BQE3;P68366	TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain	no	no	0	0	0	10.8	3.46				1	4	1	1		1			1	16	1			22.593	22.593	2;3	3.1737E-09	13937	DP690-13	161.82	152.33			0.84657	0.91975	26.634	18	0	Median	6032499999.999999	3226999999.9999995	2805500000	6581	452;1032;1521;1977;1033	6177	13182;13183;13184;13185;13186;13187;13188;13189;13190;13191;13192;13193;13194;13195;13196;13197;13198;13199;13200;13201;13202;13203;13204;13205;13206;13207	32329;32330;32331;32332;32333;32334;32335;32336;32337;32338;32339;32340;32341;32342;32343;32344;32345;32346;32347;32348;32349;32350;32351;32352;32353;32354;32355;32356;32357;32358;32359;32360;32361;32362;32363;32364;32365;32366;32367;32368;32369;32370;32371;32372;32373;32374;32375;32376;32377;32378;32379;32380;32381;32382;32383;32384;32385;32386;32387;32388;32389;32390;32391;32392;32393;32394;32395;32396;32397;32398;32399	32334		70	9606
IHGTEEGQQILK	1	0	Unmodified	1351.7096	0.70957864	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							11.742	11.742	2	6.8631E-05	4749	DP690-10	147.3	109.75			0.86886	1.0679	NaN	1	0	Median	38089000	19604000	18486000	6582	1301	6178	13208	32400;32401;32402	32401		3	9606
IHHDVNELLSLLR	0	1	Unmodified	1557.8627	0.86272524	1992	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	11	0											1						19.063	19.063	3	0.0047681	15295	DP690-11	73.219	54.762			0.58242	0.69479	NaN	1	0	Median	43976000	24353000	19623000	6583	1992	6179	13209	32403	32403		1	9606
IHIDPEIQDGSPTTSR	0	1	Unmodified	1764.8642	0.86424139	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	0	10	4						1								1			14.047	14.047	3	2.3031E-07	7529	DP690-14	146.2	92.636			0.82808	0.92771	3.2339	2	0	Median	459910000	280940000	178970000	6584	820	6180	13210;13211	32404;32405;32406;32407;32408;32409;32410	32407		7	9606
IHNANPELTDGQIQAMLR	0	1	Oxidation (M)	2036.0109	0.010922397	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	0		1															14.902	14.902	3	0.00049614	7683	DP690-2	89.484	89.484			0.9134	0.95595	NaN	1	0	Median	5502600	3095200	2407400	6585	1179	6181	13212	32411	32411	1823	1	9606
IHNIDIPTTQQVPHIEALLK	1	0	Unmodified	2279.2638	0.26376627	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							18.331	18.331	4	0.00052204	14225	DP690-10	80.541	66.023			0.76822	0.91051	NaN	1	0	Median	258120000	143810000	114310000	6586	13	6182	13213	32412;32413;32414	32412		3	9606
IHNVGSPLK	1	0	Unmodified	963.55016	0.55016488	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	10	0										1							10.513	10.513	2	0.072296	2922	DP690-10	112.41	59.774			0.8905	1.0638	NaN	1	0	Median	232540000	117590000	114950000	6587	858	6183	13214	32415	32415		0	9606
IHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPK	1	0	Unmodified	3693.0465	0.046509853	2380	Q9UKY1	ZHX1	Zinc fingers and homeoboxes protein 1	yes	yes	0	0	0	11	0											1						24.56	24.56	3	3.7652E-07	22434	DP690-11	73.691	73.691			0.551	0.67559	NaN	1	0	Median	7754700	5190900	2563800	6588	2380	6184	13215	32416	32416		1	9606
IHPTSVISGYR	0	1	Unmodified	1228.6564	0.65642086	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	6.67	3.77				2								1					13.097	13.097	2;3	0.0031175	6051	DP690-4	63.32	63.32			1.4945	1.682	5.0228	2	0	Median	109570000	76193000	33375000	6589	520	6185	13216;13217;13218	32417;32418;32419;32420;32421	32419		5	9606
IHQFLSEQFLESEQK	1	0	Unmodified	1861.921	0.92102798	1720	Q8TDB6	DTX3L	E3 ubiquitin-protein ligase DTX3L	yes	yes	0	0	0	11	0											1						17.01	17.01	3	0.056729	12433	DP690-11	51.695	26.33			NaN	NaN	NaN	0	0	Median	34587000	34587000	0	6590	1720	6186	13219	32422	32422		1	9606
IHQIGPGMVQQIQSVCMECQGHGER	0	1	2 Oxidation (M)	2910.2993	0.29933498	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	2	0	13	0													2				13.649	13.649	3;4	0.00015801	6955	DP690-13	101.92	81.026			0.85082	1.0284	NaN	1	0	Median	68604000	38534000	30070000	6591	636	6187	13220;13221	32423;32424;32425;32426;32427	32425	877;878	5	9606
IHQIGPGMVQQIQSVCMECQGHGER	0	1	Oxidation (M)	2894.3044	0.30442036	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	1	0	13	0													2				14.946	14.946	4	1.8013E-16	7814	DP690-13	175.65	161.46			0.74103	0.89614	3.9988	2	0	Median	133480000	76730000	56745000	6592	636	6187	13222;13223	32428;32429;32430;32431;32432	32429	877;878	5	9606
IHQIGPGMVQQIQSVCMECQGHGER	0	1	Unmodified	2878.3095	0.30950573	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	13	0													1				16.148	16.148	4	3.9734E-07	10375	DP690-13	137.43	120.27			0.87496	1.0608	NaN	1	0	Median	57365000	31866000	25499000	6593	636	6187	13224	32433;32434;32435	32434		3	9606
IHSEVVEDTEAVSAVQQLLDDER	0	1	Unmodified	2581.2508	0.25075456	1858	Q96GA7	SDSL	Serine dehydratase-like	yes	yes	0	0	0	6	0						1											21.238	21.238	3	0.00018944	15454	DP690-6	106.23	106.23			0.87402	0.99156	NaN	1	0	Median	4259900	1911800	2348100	6594	1858	6188	13225	32436;32437;32438;32439	32436		4	9606
IHVDFSQSVAK	1	0	Unmodified	1229.6404	0.64043645	1733	Q8WUA2	PPIL4	Peptidyl-prolyl cis-trans isomerase-like 4	yes	yes	0	0	0	12	0												1					13.876	13.876	2	0.0024047	7413	DP690-12	105.17	63.738			0.86031	1.025	NaN	1	0	Median	46680000	24936000	21744000	6595	1733	6189	13226	32440;32441	32440		2	9606
IHVQGTDLPDPIATFQQLDQEYK	1	0	Unmodified	2655.318	0.31804626	2443	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	0	12	0												1					21.692	21.692	3	5.158E-10	18087	DP690-12	144.95	132.35			0.56748	0.68211	NaN	1	0	Median	22271000	13130000	9140400	6596	2443	6190	13227	32442	32442		1	9606
IHVSDQELQSANASVDDSRLEELK	1	1	Unmodified	2682.3097	0.30966642	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	1	3	0			2														16.165	16.165	3;4	2.2093E-37	10210	DP690-3	215.06	189.81			1.0058	1.1155	0.20725	2	0	Median	102160000	53769000	48389000	6597	561	6191	13228;13229	32443;32444;32445;32446;32447	32444		5	9606
IHYLDTTTLIEPAPR	0	1	Unmodified	1738.9254	0.92538508	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	6.75	0.829						2	1	1									16.963	16.963	2;3	1.3352E-05	10360	DP690-6	169.82	159.98			0.71222	0.71847	13.321	3	0	Plateau	679240000	404140000	275100000	6598	753	6192	13230;13231;13232;13233	32448;32449;32450;32451;32452;32453;32454;32455;32456;32457	32453		10	9606
IIAATIENAQPILQIDNAR	0	1	Unmodified	2063.1375	0.13750312	40	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	9	5.34	1								1	1						1	19.6	19.6	2	9.235200000000001E-64	14218	DP690-16	267.77	137.21		+	NaN	NaN	NaN	0	0	Median	7262700	7262700	0	6599	40	6193	13234;13235;13236;13237	32458;32459;32460;32461;32462;32463	32462		6	9606
IIADLEEEQR	0	1	Unmodified	1214.6143	0.61428128	765	P46939	UTRN	Utrophin	yes	yes	0	0	0	11	0											1						11.591	11.591	3	0.068508	4394	DP690-11	44.425	5.8451			0.76373	0.92471	NaN	1	0	Median	21241000	13938000	7303100	6600	765	6194	13238	32464	32464		1	9606
IIAHAQLLEQHR	0	1	Unmodified	1427.7997	0.79973106	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		2															11.796	11.796	3;4	8.1509E-12	3948	DP690-2	184.44	121.92			0.93323	0.95347	NaN	1	0	Median	11645000	644650	11000000	6601	602	6195	13239;13240	32465;32466;32467	32466		3	9606
IIAHFLIQQYLK	1	0	Unmodified	1485.8708	0.87077073	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	12	0												2					18.961	18.961	3	0.01561	14644	DP690-12	78.513	46.791			1.0769	1.2943	NaN	1	0	Median	24320000	8435600	15885000	6602	751	6196	13241;13242	32468;32469	32469		2	9606
IIANALSSEPACLAEIEEDK	1	0	Unmodified	2172.062	0.062014494	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								19.584	19.584	2	3.6482E-30	14341	DP690-9	250.05	224.07			0.69034	0.87879	NaN	1	0	Median	16708000	9169300	7538500	6603	1046	6197	13243	32470;32471;32472;32473	32471		4	9606
IIANALSSEPACLAEIEEDKAR	1	1	Unmodified	2399.2002	0.20023931	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	8.2	3.19		1							2	1	1						18.156	18.156	2;3	1.663E-37	12642	DP690-9	241.51	213.54			0.80784	0.90948	12.034	4	0	Median	866150000	487190000	378960000	6604	1046	6198	13244;13245;13246;13247;13248	32474;32475;32476;32477;32478;32479;32480;32481;32482;32483;32484;32485;32486;32487;32488;32489;32490;32491	32490		18	9606
IIANALSSEPACLAEIEEDKARR	1	2	Unmodified	2555.3014	0.30135034	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	2	9	0									1								17.037	17.037	4	0.042255	11215	DP690-9	51.166	30.967			0.53709	0.61492	NaN	1	0	Median	8522700	5185500	3337200	6605	1046	6199	13249	32492	32492		1	9606
IIANPADSFGK	1	0	Unmodified	1131.5924	0.59242362	2564				yes	yes	0	0	0	13	0													1				11.231	11.231	2	0.0018728	3762	DP690-13	99.139	41.961	+		0.95708	1.0927	NaN	1	0	Median	10255000	5500800	4753800	6606	2564	6200	13250	32493	32493		1	9606
IIAPANMERPVR	0	2	Unmodified	1365.7551	0.75508905	1636	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	1	12	0												1					13.108	13.108	3	0.015469	6328	DP690-12	72.2	37.508			0.72705	0.82436	NaN	1	0	Median	38274000	21394000	16880000	6607	1636	6201	13251	32494;32495	32495		2	9606
IIAPPER	0	1	Unmodified	794.46504	0.46503826	926;1023;1029;1408	P60709;P63261;P68032;P68133;P63267;P62736;Q562R1	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	0	6	0						1											11.493	11.493	2	0.044409	4032	DP690-6	132.96	31.631			NaN	NaN	NaN	0	0	Median	0	0	0	6608	926;1023;1029;1408	6202	13252	32496	32496		1	9606
IICDLVEEK	1	0	Unmodified	1117.5689	0.56891099	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						15.166	15.166	2	0.0045406	9734	DP690-11	101.64	63.557			0.69096	0.81534	NaN	1	0	Median	119090000	68483000	50602000	6609	65	6203	13253	32497	32497		1	9606
IIDETMAQLQDLK	1	0	Unmodified	1516.7807	0.78069468	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							18.622	18.622	2	0.011885	14807	DP690-10	103.21	36.293			NaN	NaN	NaN	0	0	Median	33224000	0	33224000	6610	1285	6204	13254	32498;32499	32499		2	9606
IIDFLSALEGFK	1	0	Unmodified	1351.7388	0.73875351	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	7.67	3.33			3						1	4	1						24.762	24.762	2	2.3577E-07	22595	DP690-11	172.27	121.21			0.68657	0.8282	40.048	2	0	Median	59444000	35769000	23675000	6611	858	6205	13255;13256;13257;13258;13259;13260;13261;13262;13263	32500;32501;32502;32503;32504;32505;32506;32507;32508;32509;32510;32511;32512;32513;32514;32515;32516	32506		17	9606
IIDGLLVMR	0	1	Oxidation (M)	1044.6002	0.60015154	178	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	yes	yes	0	1	0	16	0																1	17.131	17.131	2	0.028607	11223	DP690-16	82.241	27.629			0.9878	1.1136	NaN	1	0	Median	52034000	27051000	24983000	6612	178	6206	13264	32517;32518;32519	32519	194	3	9606
IIDINYYPVPEACLSNKR	1	1	Unmodified	2164.0987	0.098674772	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	1	3	0			1														17.96	17.96	3	0.0010171	12609	DP690-3	74.993	49.076			0.63833	0.70796	NaN	1	0	Median	18184000	10397000	7787400	6613	574	6207	13265	32520;32521	32520		2	9606
IIDKEGDDYEVIPNSNFYVSR	1	1	Unmodified	2472.1809	0.18088408	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	1	10	0										1							17.737	17.737	3	1.5745E-10	13480	DP690-10	158.15	142.05			0.57657	0.71303	NaN	1	0	Median	100110000	68018000	32088000	6614	2215	6208	13266	32522;32523	32522		2	9606
IIDLVHLLLR	0	1	Unmodified	1203.7703	0.77032841	740	P43364	MAGEA11	Melanoma-associated antigen 11	yes	yes	0	0	0	13	0													2				22.523	22.523	2;3	0.00016058	18578	DP690-13	133.86	133.86			0.7135	0.85791	51.181	2	0	Median	26308000	12933000	13375000	6615	740	6209	13267;13268	32524;32525;32526;32527	32526		4	9606
IIDSGPQLSGSLDYNVVHSLYNK	1	0	Unmodified	2518.2704	0.27036779	1456	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	11	0											1						19.223	19.223	3	0.037356	15426	DP690-11	59.814	37.188			NaN	NaN	NaN	0	0	Median	30538000	30538000	0	6616	1456	6210	13269	32528	32528		1	9606
IIDVVYNASNNELVR	0	1	Unmodified	1717.8999	0.89989861	967	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	11	4							1								1		17.924	17.924	2	2.2862E-14	12582	DP690-15	217.22	173.71			1.056	1.2036	5.0733	2	0	Median	67802000	33914000	33889000	6617	967	6211	13270;13271	32529;32530;32531;32532;32533	32531		5	9606
IIEDCSNSEDTIK	1	0	Unmodified	1522.6821	0.68210284	93	O00507	USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	yes	0	0	0	2	0		1															11.981	11.981	2	0.0015991	4279	DP690-2	96.113	4.8002			1.2263	1.213	NaN	1	0	Median	2876100	1173600	1702500	6618	93	6212	13272	32534	32534		1	9606
IIEDCSNSEETVK	1	0	Unmodified	1522.6821	0.68210284	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	2	0		1															11.981	11.981	2	7.9796E-05	4122	DP690-2	150.04	31.639			1.2263	1.213	NaN	1	0	Median	2876100	1173600	1702500	6619	1803	6213	13273	32535;32536;32537;32538	32535		4	9606
IIEETLALK	1	0	Unmodified	1028.6118	0.61176208	139	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	10	4						1								1			16.113	16.113	2	0.0046191	10390	DP690-14	101.33	58.931			1.0032	1.174	2.7448	2	0	Median	78053000	41160000	36893000	6620	139	6214	13274;13275	32539;32540;32541;32542;32543	32540		5	9606
IIENAENEYQTAISENYQTMSDTTFK	1	0	Oxidation (M)	3055.3604	0.36044094	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	1	0	14	0														1			18.422	18.422	3	0.00039606	13551	DP690-14	72.499	61.893			0.85812	1.0361	NaN	1	0	Median	29070000	15517000	13554000	6621	864	6215	13276	32544	32544	1310	1	9606
IIENVDVITRPK	1	1	Unmodified	1395.8086	0.80856441	2142	Q9H981	ACTR8	Actin-related protein 8	yes	yes	0	0	1	12	0												1					14.326	14.326	3	0.020044	8031	DP690-12	81.676	30.89			NaN	NaN	NaN	0	0	Median	0	0	0	6622	2142	6216	13277	32545	32545		1	9606
IIETLTQQLQAK	1	0	Unmodified	1384.7926	0.79257999	2347	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	12	4								1								1	16.692	16.692	2	3.4049E-08	9887	DP690-8	209.6	138.15			0.88346	1.0106	4.3357	2	0	Median	34762000	18747000	16015000	6623	2347	6217	13278;13279	32546;32547;32548;32549;32550;32551;32552;32553	32553		8	9606
IIEVGDTPK	1	0	Unmodified	970.53351	0.53351176	951	P61619;Q9H9S3	SEC61A1;SEC61A2	Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2	yes	no	0	0	0	11.5	2.5									1					1			12.989	12.989	2	0.014357	5982	DP690-14	85.161	56.987			0.75214	0.93087	6.2983	2	0	Median	81129000	46909000	34220000	6624	951	6218	13280;13281	32554;32555;32556;32557;32558	32554		5	9606
IIEVGDTPKDR	1	1	Unmodified	1241.6616	0.66156582	951	P61619;Q9H9S3	SEC61A1;SEC61A2	Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2	yes	no	0	0	1	14	0														1			11.373	11.373	3	0.00032619	3884	DP690-14	108.31	83.46			0.72096	0.90603	NaN	1	0	Median	24503000	13854000	10649000	6625	951	6219	13282	32559;32560;32561;32562	32559		4	9606
IIEVVDAIMTTAQSHQR	0	1	Oxidation (M)	1926.9833	0.98331066	1089	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	1	0	3	0			1														16.991	16.991	3	1.7371E-06	11343	DP690-3	133.23	106.02			1.0339	1.1459	NaN	1	0	Median	43006000	22951000	20055000	6626	1089	6220	13283	32563;32564;32565;32566	32565	1707	4	9606
IIEVVDAIMTTAQSHQR	0	1	Unmodified	1910.9884	0.98839604	1089	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	3	0			1														19.702	19.702	3	1.9062E-05	14748	DP690-3	136.57	118.63			1.0736	1.2266	NaN	1	0	Median	13698000	6408300	7289300	6627	1089	6220	13284	32567;32568;32569	32568		3	9606
IIFDDFR	0	1	Unmodified	924.47052	0.47051757	767	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	10	1									1		1						18.493	18.493	2	0.0061701	12965	DP690-9	132.72	91.94			NaN	NaN	NaN	0	0	Median	19097000	11822000	7274600	6628	767	6221	13285;13286	32570;32571	32571		2	9606
IIFSEHLPLSK	1	0	Unmodified	1282.7285	0.72852317	2440	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	11	0											1						16.514	16.514	3	0.0017137	11609	DP690-11	88.155	45.913			0.66232	0.80387	NaN	1	0	Median	77646000	46877000	30769000	6629	2440	6222	13287	32572;32573	32572		2	9606
IIFVDEVFK	1	0	Unmodified	1108.6168	0.61684746	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	11	0											1						20.701	20.701	2	0.011843	17553	DP690-11	87.696	26.724			0.72194	0.86161	NaN	1	0	Median	102790000	61613000	41174000	6630	1932	6223	13288	32574;32575;32576;32577;32578	32577		5	9606
IIGATDSCGDLMFLMK	1	0	2 Oxidation (M)	1802.8253	0.82527838	745	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	2	0	15	0															1		18.525	18.525	2	0.0024216	13428	DP690-15	89.403	73.15			0.89386	1.0516	NaN	1	0	Median	8683400	4088500	4594900	6631	745	6224	13289	32579;32580;32581	32580	1096;1097	3	9606
IIGATDSSGELMFLMK	1	0	2 Oxidation (M)	1743.8423	0.84230866	1189	Q13185;P83916	CBX3;CBX1	Chromobox protein homolog 3;Chromobox protein homolog 1	yes	no	0	2	0	15.2	0.433															3	1	18.752	18.752	2	0.00010421	13028	DP690-16	123.84	102.18			0.90427	0.97492	1.1081	3	0	Plateau	347740000	184380000	163350000	6632	1189	6225	13290;13291;13292;13293	32582;32583;32584;32585;32586;32587;32588;32589;32590;32591	32589	1836;1837	10	9606
IIGATDSSGELMFLMK	1	0	Oxidation (M)	1727.8474	0.84739403	1189	Q13185;P83916	CBX3;CBX1	Chromobox protein homolog 3;Chromobox protein homolog 1	yes	no	0	1	0	12.3	3.77							1								2		19.68	19.68	2	0.0025364	14801	DP690-15	120.57	64.531			NaN	NaN	NaN	0	0	Median	4091300	4091300	0	6633	1189	6225	13294;13295;13296	32592;32593;32594;32595	32592	1836;1837	4	9606
IIGAVDQIQLTQAQLEER	0	1	Unmodified	2024.0902	0.090218576	1482	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	13	0													1				18.974	18.974	2	1.5217E-33	14128	DP690-13	278.36	278.36			0.77854	0.95011	NaN	1	0	Median	39595000	21501000	18094000	6634	1482	6226	13297	32596;32597	32596		2	9606
IIGHFFASQTAQR	0	1	Unmodified	1474.7681	0.76809658	2523	Q9Y6M1	IGF2BP2	Insulin-like growth factor 2 mRNA-binding protein 2	yes	yes	0	0	0	12	0												1					14.193	14.193	3	1.45E-07	7872	DP690-12	139.76	98.651			NaN	NaN	NaN	0	0	Median	41007000	41007000	0	6635	2523	6227	13298	32598;32599	32599		2	9606
IIGIMEEVADGFK	1	0	Unmodified	1420.7272	0.72720254	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	10	0										3							21.941	21.941	2	0.00012695	19405	DP690-10	141.91	116.67			0.84451	1.038	NaN	1	0	Median	39294000	16763000	22531000	6636	858	6228	13299;13300;13301	32600;32601;32602;32603	32600		4	9606
IIGLDQVAGMSETALPGAFK	1	0	Oxidation (M)	2033.0503	0.050327596	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															20.494	20.494	2	1.6874E-11	14012	DP690-2	164.7	164.7			1.0589	1.0702	NaN	1	0	Median	19949000	8542300	11406000	6637	668	6229	13302	32604;32605;32606;32607	32605	951	4	9606
IIGLKPEGVPR	1	1	Unmodified	1177.7183	0.71829284	889	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	1	14	0														1			13.676	13.676	3	0.0035253	7038	DP690-14	113.93	68.558			NaN	NaN	NaN	0	0	Median	26387000	0	26387000	6638	889	6230	13303	32608	32608		1	9606
IIGNLLYYR	0	1	Unmodified	1123.639	0.63897988	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	6	4		1								1							18.395	18.395	2	0.00015878	14496	DP690-10	168.74	118.7			0.98805	1.1237	34.346	2	0	Median	121750000	70406000	51344000	6639	766	6231	13304;13305	32609;32610;32611;32612;32613;32614	32610		6	9606
IIHEDGYSEDECK	1	0	Unmodified	1593.6617	0.66170175	426	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	14	0														2			11	11	2;3	1.1523E-08	3416	DP690-14	168.83	139.53			0.76401	0.9122	6.6868	2	0	Median	81193000	43557000	37636000	6640	426	6232	13306;13307	32615;32616;32617;32618;32619	32616		5	9606
IIHEDGYSEEECR	0	1	Unmodified	1635.6835	0.68349983	377	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	0	14	0														2			11.416	11.416	2;3	1.6233E-10	3919	DP690-14	240.8	220.71			0.82119	0.98812	7.5291	2	0	Median	167330000	92826000	74508000	6641	377	6233	13308;13309	32620;32621;32622;32623;32624;32625;32626	32621		7	9606
IIHGQDFDQR	0	1	Unmodified	1227.5996	0.59963426	1273	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	10	4						1								1			10.955	10.955	3	0.00025608	3378	DP690-14	123.96	89.264			0.80917	0.93262	20.237	2	0	Median	138610000	68734000	69872000	6642	1273	6234	13310;13311	32627;32628;32629;32630;32631;32632	32630		6	9606
IIIEDLLEATR	0	1	Unmodified	1284.7289	0.7289171	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	7	3.56		1							1	1							21.759	21.759	2	9.1372E-05	19114	DP690-10	176.33	137.55			0.92057	1.1403	23.502	3	0	Median	110280000	56329000	53952000	6643	1782	6235	13312;13313;13314	32633;32634;32635;32636;32637;32638;32639;32640;32641;32642;32643;32644;32645	32633		13	9606
IIILDEADSMTDGAQQALR	0	1	Oxidation (M)	2075.0205	0.020484031	663	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	1	0	14	0														1			18.344	18.344	2	4.2269E-33	13463	DP690-14	270.93	240.06			0.65809	0.79806	NaN	1	0	Median	23267000	12461000	10806000	6644	663	6236	13315	32646;32647;32648;32649	32647	935	4	9606
IIILDEADSMTDGAQQALRR	0	2	Oxidation (M)	2231.1216	0.12159506	663	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	1	1	14	0														1			16.895	16.895	3	0.025622	11544	DP690-14	43.454	28.213			0.72986	0.85771	NaN	1	0	Median	37137000	18050000	19087000	6645	663	6237	13316	32650	32650	935	1	9606
IIITVVEEQEQK	1	0	Unmodified	1427.7872	0.78716026	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.816									1	1	1						16.377	16.377	2	6.6936E-17	11544	DP690-10	301.78	301.78			0.80924	0.94404	3.2386	3	0	Plateau	458010000	245400000	212620000	6646	1319	6238	13317;13318;13319	32651;32652;32653;32654;32655;32656;32657;32658;32659;32660	32654		10	9606
IIKDFMIQGGDPTGTGR	1	1	Oxidation (M)	1820.9091	0.90908309	2464	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	1	1	13.3	3.77								1								2	14.741	14.741	2;3	1.3138E-06	8277	DP690-16	135.09	103.31			0.78949	0.87925	8.5578	2	0	Median	90349000	49440000	40910000	6647	2464	6239	13320;13321;13322	32661;32662;32663;32664;32665;32666;32667;32668	32663	2908	7	9606
IIKPVLTQESATYIAEEYSR	1	1	Unmodified	2310.2107	0.21072764	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	9.25	4.02			1						1		1			1			18.245	18.245	3	9.8609E-24	12858	DP690-3	224.99	200.64			0.75965	0.69042	17.174	4	0	Linear	1551599999.9999998	877820000	673770000	6648	581	6240	13323;13324;13325;13326	32669;32670;32671;32672;32673;32674;32675;32676;32677;32678;32679;32680	32675		12	9606
IILDLISESPIK	1	0	Unmodified	1339.7963	0.79626839	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	11.5	2.22				1		1			1			18	1	1	1		23.858	23.858	2	3.5506E-10	17146	DP690-14	223.36	223.36			0.78144	0.86459	10.554	11	0	Median	2232900000	1232300000	1000599999.9999999	6649	959	6241	13327;13328;13329;13330;13331;13332;13333;13334;13335;13336;13337;13338;13339;13340;13341;13342;13343;13344;13345;13346;13347;13348;13349;13350	32681;32682;32683;32684;32685;32686;32687;32688;32689;32690;32691;32692;32693;32694;32695;32696;32697;32698;32699;32700;32701;32702;32703;32704;32705;32706;32707;32708;32709;32710;32711;32712;32713;32714;32715;32716;32717;32718;32719;32720;32721;32722;32723;32724;32725;32726;32727;32728;32729;32730;32731;32732;32733;32734;32735;32736;32737;32738;32739;32740;32741;32742;32743;32744;32745;32746;32747;32748;32749;32750;32751;32752;32753;32754;32755;32756;32757	32739		77	9606
IILLAEGR	0	1	Unmodified	883.5491	0.54910224	571	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	5	0					1												15.957	15.957	2	0.040563	9164	DP690-5	127.84	27.924			0.96619	1.0026	NaN	1	0	Median	87254000	47038000	40215000	6650	571	6242	13351	32758	32758		0	9606
IILNSHSPAGSAAISQQDFHPK	1	0	Unmodified	2317.1815	0.1814932	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		2															14.182	14.182	3;4	1.3588E-06	6741	DP690-2	130.37	130.37			0.82922	0.83445	12.364	2	0	Median	39014000	21834000	17180000	6651	2418	6243	13352;13353	32759;32760;32761;32762;32763;32764;32765	32763		7	9606
IILPEGAK	1	0	Unmodified	839.51165	0.5116541	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												1					13.685	13.685	2	0.031529	7114	DP690-12	104.37	35.881			NaN	NaN	NaN	0	0	Median	126510000	0	126510000	6652	375	6244	13354	32766	32766		1	9606
IILTEQANEK	1	0	Unmodified	1157.6292	0.62920306	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										1							12.91	12.91	2	3.5111E-05	6421	DP690-10	195.06	64.843			1.0912	1.2741	NaN	1	0	Median	314780000	168570000	146210000	6653	311	6245	13355	32767;32768;32769;32770	32770		4	9606
IIMIGTLTALQWFIYDSVK	1	0	Unmodified	2211.2013	0.20134893	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	10	0										1							27.599	27.599	2	0.026687	25841	DP690-10	94.781	66.42			NaN	NaN	NaN	0	0	Median	0	0	0	6654	1070	6246	13356	32771	32771		1	9606
IIMIGTLTALQWFIYDSVK	1	0	Oxidation (M)	2227.1963	0.19626355	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	0	9	0									1								26.614	26.614	2	0.0088141	22186	DP690-9	97.551	71.32			NaN	NaN	NaN	0	0	Median	394490	394490	0	6655	1070	6246	13357	32772	32772	1668	1	9606
IINDLLQSLR	0	1	Unmodified	1183.6925	0.69247202	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	9	4.32			1								1		1				19.659	19.659	2	9.2357E-05	14673	DP690-3	193.1	110.35			1.2226	1.4988	30.812	3	0	Median	267550000	113840000	153710000	6656	1798	6247	13358;13359;13360	32773;32774;32775;32776;32777;32778;32779;32780	32780		8	9606
IINDNATYCR	0	1	Unmodified	1238.5714	0.5713706	95	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	12	0												1					11.943	11.943	2	0.0030856	4776	DP690-12	131.22	91.164			NaN	NaN	NaN	0	0	Median	28066000	28066000	0	6657	95	6248	13361	32781	32781		1	9606
IINEPTAAAIAYGLDK	1	0	Unmodified	1658.8879	0.88793694	462;463	P11021;P11142;P54652	HSPA5;HSPA8;HSPA2	78 kDa glucose-regulated protein;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	8	4				1								1					19.01	19.01	2	7.7488E-09	14622	DP690-12	184.96	149.25			1.2073	1.3039	48.186	2	0	Median	342190000	159830000	182360000	6658	462;463	6249	13362;13363	32782;32783;32784;32785;32786;32787;32788;32789;32790;32791;32792	32787		11	9606
IINEPTAAAIAYGLDKK	2	0	Unmodified	1786.9829	0.98289996	463	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	7.83	3.85				3							1	2					17.192	17.192	2;3	6.812E-08	11396	DP690-4	154.47	124.14			0.99166	1.132	36.365	5	0	Median	1607599999.9999998	724360000	883250000	6659	463	6250	13364;13365;13366;13367;13368;13369	32793;32794;32795;32796;32797;32798;32799;32800;32801;32802;32803;32804;32805;32806;32807;32808;32809;32810;32811;32812	32809		20	9606
IINEPTAAAIAYGLDKR	1	1	Unmodified	1814.989	0.98904797	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3.67	0.471			1	2													17.534	17.534	2;3	1.081E-18	11729	DP690-4	195.5	148.75			1.4046	1.5798	6.1979	2	0	Median	144140000	11515000	132620000	6660	462	6251	13370;13371;13372	32813;32814;32815;32816;32817;32818;32819;32820;32821;32822	32821		10	9606
IINEPTAAAIAYGLDR	0	1	Unmodified	1686.8941	0.89408495	449;508	P17066;P0DMV9;P0DMV8	HSPA6;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	8	4				1								1					19.295	19.295	2	2.0045E-12	13822	DP690-4	206.74	122.87			1.4554	1.6226	8.6536	2	0	Median	200400000	82823000	117580000	6661	508;449	6252	13373;13374	32823;32824;32825;32826;32827	32827		5	9606
IIPGFMCQGGDFTR	0	1	Oxidation (M)	1613.733	0.73303298	1008	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	1	0	12	4								1								1	17.236	17.236	2	0.00066451	10411	DP690-8	109.16	83.111			0.75995	0.82127	5.1616	2	0	Median	142870000	82783000	60086000	6662	1008	6253	13375;13376	32828;32829;32830;32831;32832;32833;32834;32835	32833	1532	8	9606
IIPGFMCQGGDFTR	0	1	Unmodified	1597.7381	0.73811836	1008	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	0	0	8	0								1									18.743	18.743	2	0.00061837	12265	DP690-8	110.84	82.633			0.72319	0.84184	NaN	1	0	Median	7295500	3760100	3535400	6663	1008	6253	13377	32836;32837;32838;32839;32840;32841;32842;32843	32839		8	9606
IIPGGIADR	0	1	Unmodified	910.52362	0.52361577	2221	Q9NUP9	LIN7C	Protein lin-7 homolog C	yes	yes	0	0	0	15	0															1		13.604	13.604	2	0.00070003	6835	DP690-15	139.97	46.775			0.71664	0.80694	NaN	1	0	Median	61264000	35693000	25572000	6664	2221	6254	13378	32844;32845	32844		2	9606
IIPGSKEETPSK	2	0	Unmodified	1284.6925	0.6925316	1435	Q5T2T1	MPP7	MAGUK p55 subfamily member 7	yes	yes	0	0	1	12	0												1					10.33	10.33	3	0.075136	2578	DP690-12	100.93	70.073			0.61601	0.72293	NaN	1	0	Median	12584000	7731000	4852900	6665	1435	6255	13379	32846	32846		0	9606
IIPLYSTLPPQQQQR	0	1	Unmodified	1780.9836	0.98356866	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	7	4			1								1						17.372	17.372	2	0.00084462	11707	DP690-3	100.82	78.764			0.73919	0.86403	15.514	2	0	Median	62447000	36397000	26050000	6666	161	6256	13380;13381	32847;32848;32849;32850;32851;32852;32853;32854	32851		8	9606
IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK	1	0	Unmodified	4054.0245	0.024513361	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	12	0												1					21.949	21.949	3	3.0477E-11	18308	DP690-12	91.779	91.779			0.42529	0.51563	NaN	1	0	Median	12690000	8654400	4035300	6667	959	6257	13382	32855;32856;32857;32858	32858		4	9606
IIQEQDAGLDALSSIISR	0	1	Unmodified	1928.0215	0.021470309	2407	Q9UNK0	STX8	Syntaxin-8	yes	yes	0	0	0	15	0															1		21.989	21.989	2	0.0017319	17337	DP690-15	117.48	76.315			NaN	NaN	NaN	0	0	Median	245410	0	245410	6668	2407	6258	13383	32859	32859		1	9606
IIQFQATPCPK	1	0	Unmodified	1301.6802	0.68019277	1125	Q06330	RBPJ	Recombining binding protein suppressor of hairless	yes	yes	0	0	0	12	0												1					14.944	14.944	2	0.00012456	8919	DP690-12	135.55	96.835			0.64166	0.7441	NaN	1	0	Median	110120000	67856000	42262000	6669	1125	6259	13384	32860;32861	32860		2	9606
IIQGQGVDEPLSETGFK	1	0	Unmodified	1816.9207	0.92069363	2187	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	0	0	7	0							1										16.946	16.946	2	9.0892E-14	10707	DP690-7	212.68	181.05			0.7338	0.78546	NaN	1	0	Median	67313000	37210000	30103000	6670	2187	6260	13385	32862;32863;32864	32862		3	9606
IIQHLVPASFR	0	1	Unmodified	1279.7401	0.74009091	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	4	0				1													15.111	15.111	3	0.0036519	8710	DP690-4	77.124	52.109			0.98762	1.1202	NaN	1	0	Median	25793000	13162000	12631000	6671	2000	6261	13386	32865;32866;32867	32865		3	9606
IIQLLDDYPK	1	0	Unmodified	1216.6703	0.67033959	385	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	10	4						1								1			18.493	18.493	2	0.00027448	12261	DP690-6	125.16	65.042			0.97353	1.1085	NaN	1	0	Median	17218000	8628200	8589800	6672	385	6262	13387;13388	32868;32869;32870;32871	32869		4	9606
IIQTPGLWESENQNK	1	0	Unmodified	1755.8792	0.87916317	2175	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	15	0															1		16.833	16.833	2	2.4624E-05	11161	DP690-15	152.67	111.59			0.87138	1.0273	NaN	1	0	Median	11421000	5974700	5446200	6673	2175	6263	13389	32872;32873;32874;32875	32875		4	9606
IISAISELLER	0	1	Unmodified	1242.7184	0.71835242	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								20.908	20.908	2	0.00090078	15978	DP690-9	140.16	94.006			NaN	NaN	NaN	0	0	Median	4538800	0	4538800	6674	2217	6264	13390	32876	32876		1	9606
IISLETYNLLR	0	1	Unmodified	1333.7606	0.76055158	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.8	1.72									1	2	1			1			20.271	20.271	2	1.5E-06	17141	DP690-10	164.96	69.214			0.8998	1.0458	13.516	4	0	Median	903320000	422930000	480380000	6675	1319	6265	13391;13392;13393;13394;13395	32877;32878;32879;32880;32881;32882;32883;32884;32885;32886;32887;32888;32889;32890;32891;32892;32893	32881		17	9606
IISLLSGKEEAIQVAIAELR	1	1	Unmodified	2152.2467	0.24671922	1294	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	1	9	0									1								22.141	22.141	3	0.00089046	17462	DP690-9	77.899	69.428			NaN	NaN	NaN	0	0	Median	2398500	1316000	1082400	6676	1294	6266	13396	32894;32895	32895		2	9606
IISNASCTTNCLAPLAK	1	0	Unmodified	1832.9125	0.91245391	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	10	4						1								1			15.669	15.669	2	1.5879E-22	8867	DP690-6	250.69	250.69			1.0693	1.2322	34.471	2	0	Median	147540000	74361000	73179000	6677	371	6267	13397;13398	32896;32897;32898;32899;32900;32901;32902;32903;32904	32904		9	9606
IISQHQAVIIATQSAQVLLEK	1	0	Unmodified	2289.3056	0.30563108	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9	0									1								20.651	20.651	3	3.0285E-05	15628	DP690-9	119.94	106.9			0.84366	1.0605	NaN	1	0	Median	6002100	2869900	3132200	6678	1102	6268	13399	32905;32906	32905		2	9606
IISQWDMTVTLPSR	0	1	Oxidation (M)	1661.8447	0.84469192	2579				yes	yes	0	1	0	13	0													2				22.034	22.034	3	0.04161	16920	DP690-13	52.101	32.091	+		0.84674	1.0292	1.5453	2	0	Median	100890000	54092000	46801000	6679	2579	6269	13400;13401	32907;32908;32909	32908	2992	3	9606
IISSDRDLLAVVFYGTEK	1	1	Unmodified	2025.0783	0.078256906	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	8	4				1								1					21.325	21.325	3	1.5277E-05	16140	DP690-4	124.99	104.25			2.0364	2.4515	94.821	2	0	Median	21405000	10539000	10866000	6680	479	6270	13402;13403	32910;32911;32912;32913	32912		4	9606
IISSIEQKEENK	2	0	Unmodified	1416.746	0.74602373	970	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	1	7	0							1										10.718	10.718	3	0.066907	3178	DP690-7	112.13	78.165			1.3258	1.4175	NaN	1	0	Median	13430000	5224200	8205600	6681	970	6271	13404	32914	32914		0	9606
IITDVIGNPEEERR	0	2	Unmodified	1639.8529	0.85294842	1797	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	0	1	12	0												1					14.864	14.864	3	7.0966E-06	8844	DP690-12	126.83	97.341			1.0065	1.1412	NaN	1	0	Median	85951000	53441000	32509000	6682	1797	6272	13405	32915;32916;32917	32916		3	9606
IITEGFEAAK	1	0	Unmodified	1077.5706	0.57062555	702	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	4	0				1													14.5	14.5	2	0.00015819	7860	DP690-4	134.26	49.692			1.5246	1.6177	NaN	1	0	Median	69286000	25753000	43533000	6683	702	6273	13406	32918;32919	32919		2	9606
IITGGAPELAVEGNGPVESNAVLTK	1	0	Unmodified	2435.2908	0.29076888	1175	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	11	0											1						18.331	18.331	2	7.2337E-05	14195	DP690-11	142.32	103.26			NaN	NaN	NaN	0	0	Median	0	0	0	6684	1175	6274	13407	32920	32920		1	9606
IITHPNFNGNTLDNDIMLIK	1	0	Oxidation (M)	2298.1678	0.16781697	28	CON__P00761			yes	yes	0	1	0	7.91	4.7	1	2	2	2	1	2	1	2	2		1	1	1	1	1	2	18.609	18.609	2;3	2.5485E-21	13406	DP690-3	208.79	171.13		+	NaN	NaN	NaN	0	0	Median	1538099999.9999998	1538099999.9999998	0	6685	28	6275	13408;13409;13410;13411;13412;13413;13414;13415;13416;13417;13418;13419;13420;13421;13422;13423;13424;13425;13426;13427;13428;13429	32921;32922;32923;32924;32925;32926;32927;32928;32929;32930;32931;32932;32933;32934;32935;32936;32937;32938;32939;32940;32941;32942;32943;32944;32945;32946;32947;32948;32949;32950;32951;32952;32953;32954;32955;32956;32957;32958;32959;32960;32961;32962	32942	28	42	
IITHPNFNGNTLDNDIMLIK	1	0	Unmodified	2282.1729	0.17290235	28	CON__P00761			yes	yes	0	0	0	9.5	3.73			1				1		1		1		1	1			19.216	19.216	3	2.6334E-14	14615	DP690-14	137.99	116.68		+	0.3095	0.37297	NaN	1	0	Median	368860000	347550000	21307000	6686	28	6275	13430;13431;13432;13433;13434;13435	32963;32964;32965;32966;32967;32968;32969;32970;32971;32972;32973	32967		11	
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	1	1	Oxidation (M)	3324.7136	0.71362475	28	CON__P00761			yes	yes	0	1	1	7	2.83			1						2								19.883	19.883	3;4	6.8947E-09	14993	DP690-3	115.89	94.852		+	NaN	NaN	NaN	0	0	Median	25212000	25212000	0	6687	28	6276	13436;13437;13438	32974;32975;32976;32977	32974	28	4	
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	1	1	Unmodified	3308.7187	0.71871013	28	CON__P00761			yes	yes	0	0	1	6	0						1											20.32	20.32	4	0.067903	14423	DP690-6	43.291	18.894		+	NaN	NaN	NaN	0	0	Median	1497700	1497700	0	6688	28	6276	13439	32978	32978		1	
IITIPATQLAQCQLQTK	1	0	Unmodified	1926.0608	0.060832703	1347	Q15723	ELF2	ETS-related transcription factor Elf-2	yes	yes	0	0	0	12	0												1					18.472	18.472	2	0.0006388	13831	DP690-12	135.04	79.728			NaN	NaN	NaN	0	0	Median	4909800	4909800	0	6689	1347	6277	13440	32979	32979		1	9606
IITITGTQDQIQNAQYLLQNSVK	1	0	Unmodified	2588.381	0.38098087	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	11.5	3.39				1					1			3	1	1		1	21.568	21.568	2;3	1.5971E-62	17772	DP690-12	321.82	321.82			0.84914	0.95241	4.2042	5	0	Median	475010000	252390000	222620000	6690	959	6278	13441;13442;13443;13444;13445;13446;13447;13448	32980;32981;32982;32983;32984;32985;32986;32987;32988;32989;32990;32991;32992;32993;32994;32995;32996;32997;32998;32999;33000;33001;33002;33003;33004;33005	32982		26	9606
IITLAGPTNAIFK	1	0	Unmodified	1357.7969	0.79693709	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	12.4	3.5						1	1						1	3	1	1	20.157	20.157	2	9.7331E-11	13371	DP690-6	218.6	179.83			0.81257	0.90331	12.843	4	0	Median	1652699999.9999998	832190000	820520000	6691	1326	6279	13449;13450;13451;13452;13453;13454;13455;13456	33006;33007;33008;33009;33010;33011;33012;33013;33014;33015;33016;33017;33018;33019;33020;33021;33022;33023;33024	33022		19	9606
IITLTGPTNAIFK	1	0	Unmodified	1387.8075	0.80750177	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	10.3	4.16						2	1	1						1	1	1	19.409	19.409	2	8.72E-11	13276	DP690-6	231.38	146.64			0.81552	0.86993	14.536	6	0	Median	1538999999.9999998	812950000	726000000	6692	1325	6280	13457;13458;13459;13460;13461;13462;13463	33025;33026;33027;33028;33029;33030;33031;33032;33033;33034;33035;33036;33037;33038;33039;33040;33041;33042;33043;33044;33045	33039		21	9606
IITPLNK	1	0	Unmodified	797.50109	0.50108942	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	11	0											1						13.236	13.236	2	0.051703	6872	DP690-11	106.76	41.958			NaN	NaN	NaN	0	0	Median	17957000	17957000	0	6693	272	6281	13464	33046;33047	33047		2	9606
IITVPVFHLFHK	1	0	Unmodified	1449.8496	0.84964136	2193	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	2	0		1															18.572	18.572	3	0.060862	12072	DP690-2	33.761	12.365			0.62661	0.61645	NaN	1	0	Median	1738100	940420	797650	6694	2193	6282	13465	33048	33048		1	9606
IIVDELKQEVISTSSK	2	0	Unmodified	1787.988	0.98804492	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	1	11.3	3.77						1								2			17.4	17.4	2;3	2.3407999999999997E-22	12227	DP690-14	249.19	228.76			0.88348	0.98505	2.7887	2	0	Median	742180000	396980000	345200000	6695	1022	6283	13466;13467;13468	33049;33050;33051;33052;33053;33054;33055;33056;33057;33058;33059	33051		11	9606
IIVDTYGGWGAHGGGAFSGK	1	0	Unmodified	1948.9432	0.94316041	634	P31153;Q00266	MAT2A;MAT1A	S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1	yes	no	0	0	0	5	0					1												16.801	16.801	3	1.7277E-05	10303	DP690-5	122.22	109.81			1.0143	1.0109	NaN	1	0	Median	66602000	30476000	36126000	6696	634	6284	13469	33060;33061;33062;33063;33064	33061		5	9606
IIVEKPFGR	1	1	Unmodified	1057.6284	0.6284152	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	1	4	0				2													13.442	13.442	2;3	0.0012582	6436	DP690-4	101.54	55.152			0.82459	0.94046	2.9077	2	0	Median	84167000	45750000	38417000	6697	469	6285	13470;13471	33065;33066;33067;33068;33069	33066		5	9606
IIVENLFYPVTLDVLHQIFSK	1	0	Unmodified	2487.3777	0.37773339	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	10.5	1.5									1			1					26.688	26.688	3	0.0055212	22273	DP690-9	86.439	67.116			NaN	NaN	NaN	0	0	Median	1042600	424330	618220	6698	595	6286	13472;13473	33070;33071	33071		2	9606
IIVGDATEKDASK	2	0	Unmodified	1345.7089	0.70890994	1876	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	1	13	0													1				10.725	10.725	3	0.00039842	3096	DP690-13	103.14	70.612			0.65449	0.74198	NaN	1	0	Median	29963000	16662000	13301000	6699	1876	6287	13474	33072	33072		1	9606
IIYFADAELLKDVLK	2	0	Unmodified	1749.9917	0.99167373	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	1	6	4		1								1							22.198	22.198	3	4.4415E-06	19758	DP690-10	131.08	103.15			0.89322	0.99718	7.8298	2	0	Median	24853000	12632000	12220000	6700	1282	6288	13475;13476	33073;33074;33075;33076;33077	33075		5	9606
IIYGDPVTFLPHLPR	0	1	Unmodified	1736.9614	0.96137665	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								20.266	20.266	3	0.05855	15178	DP690-9	63.16	44.747			NaN	NaN	NaN	0	0	Median	2132100	0	2132100	6701	1453	6289	13477	33078	33078		1	9606
IIYIVHDEVKDK	2	0	Unmodified	1470.8082	0.80823006	587	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	1	7	0							1										12.811	12.811	3	0.008785	5641	DP690-7	70.728	52.943			1.1528	1.2325	NaN	1	0	Median	13627000	5573400	8054000	6702	587	6290	13478	33079	33079		1	9606
IIYSGEELECNLK	1	0	Unmodified	1566.76	0.75995923	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	10	0										2							16.88	16.88	2	0.0019921	12260	DP690-10	172.21	91.976			NaN	NaN	NaN	0	0	Median	0	0	0	6703	1399	6291	13479;13480	33080;33081	33081		2	9606
IKAEYEGDGIPTVFVAVAGR	1	1	Unmodified	2091.1001	0.10005498	560	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	1	5	0					1												19.052	19.052	3	0.0040314	13160	DP690-5	64.265	50.011			1.1445	1.227	NaN	1	0	Median	29864000	12126000	17738000	6704	560	6292	13481	33082;33083	33082		2	9606
IKDDGPSQSESATETAMTLPSESR	1	1	Oxidation (M)	2552.1548	0.15480526	2143	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	1	1	4	0				1													13.225	13.225	3	0.028549	6238	DP690-4	68.895	40.57			NaN	NaN	NaN	0	0	Median	2250000	0	2250000	6705	2143	6293	13482	33084;33085	33084	2635	2	9606
IKDLLQQMEEGLK	2	0	Unmodified	1543.828	0.82797922	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	1	9	4					1								1				19.45	19.45	3	2.404E-05	13586	DP690-5	111.88	76.283			0.78342	0.8242	23.609	2	0	Median	118580000	65277000	53298000	6706	2208	6294	13483;13484	33086;33087;33088;33089	33089		4	9606
IKDNDKEDGCFYFR	2	1	Unmodified	1805.8043	0.80428367	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	2	10	0										1							13.564	13.564	3	0.051218	7463	DP690-10	52.101	52.101			1.0718	1.2231	NaN	1	0	Median	150100000	72224000	77873000	6707	13	6295	13485	33090	33090		1	9606
IKDQQPDSDMDPNSSGEGVNSVSSSIK	2	0	Oxidation (M)	2836.2669	0.26687491	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	1	1	10	0										1							13.326	13.326	3	0.017393	7062	DP690-10	74.471	47.323			NaN	NaN	NaN	0	0	Median	0	0	0	6708	2483	6296	13486	33091	33091	2924	1	9606
IKEIAVTVK	2	0	Unmodified	999.63283	0.63283187	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	1	4	0				1													11.813	11.813	2	0.0097796	4390	DP690-4	109.71	52.125			1.4569	1.506	NaN	1	0	Median	14398000	5323100	9074400	6709	1959	6297	13487	33092;33093;33094;33095	33093		4	9606
IKELNNTCEPVVTQPKPK	3	0	Unmodified	2094.1143	0.11432484	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	2	3	0			1														11.672	11.672	4	0.0020878	4281	DP690-3	82.865	69.976			0.83838	0.86974	NaN	1	0	Median	36488000	18891000	17597000	6710	1778	6298	13488	33096;33097;33098;33099;33100	33100		5	9606
IKELSQGGCMSSFR	1	1	Oxidation (M)	1614.7494	0.74941132	1926	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	1	1	12	0												1					11.794	11.794	3	0.010479	4602	DP690-12	65.374	47.359			0.76687	0.9851	NaN	1	0	Median	31454000	18235000	13219000	6711	1926	6299	13489	33101;33102;33103	33103	2456	3	9606
IKEWYEK	2	0	Unmodified	994.51238	0.51238239	42;30	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	no	no	0	0	1	1.5	0.5	1	1															12.161	12.161	2	4.556E-06	3920	DP690-1	166.05	74.151		+	NaN	NaN	NaN	0	0	Median	25125000	25125000	0	6712	42;30	6300	13490;13491	33104;33105	33104		2	9606
IKFEMEQNLR	1	1	Oxidation (M)	1322.6653	0.66527099	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	5.75	3.42	1			1					2								12.649	12.649	2;3	0.00599	4409	DP690-1	106.2	53.92		+	NaN	NaN	NaN	0	0	Median	210540000	210540000	0	6713	667	6301	13492;13493;13494;13495	33106;33107;33108;33109;33110;33111;33112	33107	937	7	9606
IKFEMEQNLR	1	1	Unmodified	1306.6704	0.67035637	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	9	0									1								14.785	14.785	3	0.002119	8196	DP690-9	128.28	81.874		+	NaN	NaN	NaN	0	0	Median	32904000	32904000	0	6714	667	6301	13496	33113;33114	33113		2	9606
IKGCHDHLTLSVSRPEGR	1	2	Unmodified	2061.0538	0.053790265	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	2	14	0														2			10.646	10.646	4;5	0.00053901	2990	DP690-14	87.138	73.511			0.8153	0.91125	5.1341	2	0	Median	694890000	350240000	344640000	6715	820	6302	13497;13498	33115;33116;33117;33118;33119	33119		5	9606
IKGDVDVSAPK	2	0	Unmodified	1127.6186	0.61863837	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9	0									1								10.625	10.625	2	0.005554	2895	DP690-9	108.47	10.656			0.69266	0.80158	NaN	1	0	Median	45740000	27073000	18667000	6716	1145	6303	13499	33120;33121;33122	33120		3	9606
IKGDVDVTGPK	2	0	Unmodified	1127.6186	0.61863837	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9	0									1								10.625	10.625	3	0.0028426	2923	DP690-9	84.169	9.081			0.81433	0.99543	NaN	1	0	Median	5535700	2919800	2615900	6717	1145	6304	13500	33123;33124	33123		2	9606
IKGDVPSVGLEGPDVDLQGPEAK	2	0	Unmodified	2319.1958	0.19580586	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	10	0.816									1	1	1						17.088	17.088	3	5.0572E-07	12562	DP690-10	107.85	73.231			0.50119	0.58393	NaN	1	0	Median	102070000	75007000	27061000	6718	1145	6305	13501;13502;13503	33125;33126;33127;33128;33129	33125		5	9606
IKGGADVSGGVSAPDISLGEGHLSVK	2	0	Unmodified	2449.2813	0.28126682	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9	0									1								16.098	16.098	4	0.028896	10021	DP690-9	38.386	24.655			0.56907	0.68525	NaN	1	0	Median	9886800	5641600	4245200	6719	1145	6306	13504	33130;33131	33130		2	9606
IKGPNAVQLVK	2	0	Unmodified	1165.7183	0.71829284	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	1	2	0		1															12.751	12.751	3	0.012417	5059	DP690-2	68.786	39.988			1.0955	1.1373	NaN	1	0	Median	1257300	617900	639410	6720	1555	6307	13505	33132;33133;33134;33135;33136	33132		5	9606
IKIEPDSEKDEVK	3	0	Unmodified	1528.7985	0.79845323	1162	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	2	9	0									1								10.78	10.78	3	0.068151	3161	DP690-9	49.333	16.106			0.64473	0.70755	NaN	1	0	Median	4455200	2629900	1825400	6721	1162	6308	13506	33137	33137		1	9606
IKIIAPPERK	2	1	Unmodified	1163.739	0.73902828	926;1023;1029;1408	P60709;P63261;P68032;P68133;P63267;P62736;Q562R1	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	2	14	0														1			10.646	10.646	3	0.0061203	3004	DP690-14	80.916	80.916			0.74103	0.89192	NaN	1	0	Median	34582000	19150000	15432000	6722	926;1023;1029;1408	6309	13507	33138;33139;33140;33141	33139		4	9606
IKPPTPAVSNVR	1	1	Unmodified	1277.7456	0.74557022	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							12.098	12.098	3	0.01794	5272	DP690-10	62.088	36.107			0.66553	0.79385	NaN	1	0	Median	170860000	111900000	58960000	6723	13	6310	13508	33142;33143	33143		2	9606
IKPSQNTETLELLLK	2	0	Unmodified	1725.9877	0.98765098	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	1	12	0												2					17.795	17.795	2;3	3.9194E-11	12824	DP690-12	212.39	154.86			0.79372	0.90419	12.372	2	0	Median	286970000	159810000	127160000	6724	2240	6311	13509;13510	33144;33145;33146;33147;33148;33149;33150	33144		7	9606
IKTPIPTSLR	1	1	Unmodified	1124.6917	0.69174374	1486	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	yes	yes	0	0	1	16	0																1	13.915	13.915	3	0.005847	7165	DP690-16	77.288	56.51			1.4278	1.6805	NaN	1	0	Median	5203800	2434800	2769000	6725	1486	6312	13511	33151;33152	33151		2	9606
IKYPENFFLLR	1	1	Unmodified	1438.7973	0.79727144	963;683;964	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	1	9	3.56						1	1							1			18.912	18.912	3	3.6401E-05	14133	DP690-14	169.21	117.48			3.2904	3.6336	205.54	2	0	Median	352490000	180180000	172310000	6726	963;964;683	6313	13512;13513;13514	33153;33154;33155;33156;33157;33158;33159;33160	33156		8	9606
ILAAALTECHR	0	1	Unmodified	1253.655	0.65504065	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					13.313	13.313	3	5.5818E-05	6557	DP690-12	133.75	57.073			0.78684	0.8794	NaN	1	0	Median	241350000	129180000	112170000	6727	750	6314	13515	33161;33162	33161		2	9606
ILAAQGQLSAQGGAQPSVEAPAAPRPTATQLTR	0	2	Unmodified	3255.7324	0.73238636	2140	Q9H936	SLC25A22	Mitochondrial glutamate carrier 1	yes	yes	0	0	1	14	0														1			15.676	15.676	3	1.4842E-15	9836	DP690-14	148.53	141.16			0.5367	0.63072	NaN	1	0	Median	66012000	42214000	23798000	6728	2140	6315	13516	33163;33164;33165;33166;33167;33168	33166		6	9606
ILACHGTDSVLELFCILSK	1	0	Unmodified	2175.1068	0.10679662	2410	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	11	0											1						23.409	23.409	3	8.6506E-05	21086	DP690-11	99.891	78.532			NaN	NaN	NaN	0	0	Median	3781900	3781900	0	6729	2410	6316	13517	33169	33169		1	9606
ILAFPCNQFGK	1	0	Unmodified	1293.654	0.65397802	686	P36969	GPX4	Phospholipid hydroperoxide glutathione peroxidase, mitochondrial	yes	yes	0	0	0	16	0																1	17.788	17.788	2	9.5002E-05	12027	DP690-16	134.81	82.232			0.75111	0.8498	NaN	1	0	Median	49098000	28522000	20576000	6730	686	6317	13518	33170;33171;33172;33173;33174;33175	33171		6	9606
ILAGLGFDPEMQNRPTQK	1	1	Unmodified	2014.0306	0.030595207	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	1	11	0											1						16.987	16.987	3	0.00052509	12290	DP690-11	123.42	85.359			NaN	NaN	NaN	0	0	Median	64719000	64719000	0	6731	1687	6318	13519	33176;33177	33176		2	9606
ILAHLTGTEFMQDPDEEHLKK	2	0	Oxidation (M)	2467.2053	0.20532469	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	1	1	13	0													1				13.92	13.92	4	0.0004908	7239	DP690-13	77.037	64.968			0.70363	0.78736	NaN	1	0	Median	75205000	44452000	30753000	6732	2194	6319	13520	33178;33179;33180;33181	33179	2676	4	9606
ILAHLTGTEFMQDPDEEHLKK	2	0	Unmodified	2451.2104	0.21041007	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	1	13	0													1				15.179	15.179	4	0.00050824	8999	DP690-13	76.068	76.068			0.60567	0.68138	NaN	1	0	Median	51528000	32536000	18992000	6733	2194	6319	13521	33182;33183	33182		2	9606
ILAIGLINEALDEGDAQK	1	0	Unmodified	1882.0048	0.004757612	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	6	4		1								1							22.689	22.689	2	1.1604E-16	20292	DP690-10	199.96	199.96			1.0144	1.1196	36.433	2	0	Median	71755000	41699000	30056000	6734	766	6320	13522;13523	33184;33185;33186;33187;33188;33189;33190;33191	33186		8	9606
ILALDCGLK	1	0	Unmodified	1001.558	0.55795237	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															16.563	16.563	2	0.014945	9527	DP690-2	84.568	23.596			1.2322	1.2465	NaN	1	0	Median	23308000	10523000	12785000	6735	602	6321	13524	33192;33193	33193		2	9606
ILAQDVAQLK	1	0	Unmodified	1097.6445	0.64445919	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										1							15.448	15.448	2	0.018546	10173	DP690-10	101.43	24.148			NaN	NaN	NaN	0	0	Median	91502000	0	91502000	6736	311	6322	13525	33194;33195	33194		2	9606
ILATAGWDHR	0	1	Unmodified	1138.5883	0.5883413	2047	Q9BYB4	GNB1L	Guanine nucleotide-binding protein subunit beta-like protein 1	yes	yes	0	0	0	6	0						1											13.407	13.407	3	0.00062747	6129	DP690-6	103.26	85.446			0.88503	1.0112	NaN	1	0	Median	5485300	2930500	2554800	6737	2047	6323	13526	33196;33197;33198;33199	33196		4	9606
ILATPPQEDAPSVDIANIR	0	1	Unmodified	2019.0637	0.063669474	615	P29401	TKT	Transketolase	yes	yes	0	0	0	4	0				1													18.382	18.382	2	0.00011932	12793	DP690-4	117.48	98.28			0.98116	1.1336	NaN	1	0	Median	3323800	1597100	1726700	6738	615	6324	13527	33200;33201	33201		2	9606
ILATTPSAVFR	0	1	Unmodified	1174.671	0.67100829	2199	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	12	0												1					16.599	16.599	2	0.00043234	11221	DP690-12	115.7	53.04			0.74195	0.8581	NaN	1	0	Median	122310000	68861000	53444000	6739	2199	6325	13528	33202;33203;33204;33205	33204		4	9606
ILAVNGQDVR	0	1	Unmodified	1083.6037	0.60365701	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							13.494	13.494	2	0.0020732	7305	DP690-10	101.72	71.555			0.81712	1.0082	NaN	1	0	Median	129420000	74449000	54976000	6740	1254	6326	13529	33206;33207	33206		2	9606
ILCEQCMTSNQK	1	0	Unmodified	1510.6578	0.65781912	1763	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	12	0												1					12.553	12.553	2	0.011926	5640	DP690-12	103.31	61.121			NaN	NaN	NaN	0	0	Median	4347400	0	4347400	6741	1763	6327	13530	33208	33208		1	9606
ILDAAGANLK	1	0	Unmodified	984.5604	0.56039521	2320	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	0	6	0						1											13.715	13.715	2	0.00019224	6648	DP690-6	128.61	69.826			0.70708	0.79834	NaN	1	0	Median	22569000	12035000	10534000	6742	2320	6328	13531	33209;33210;33211;33212;33213	33211		5	9606
ILDAPEIR	0	1	Unmodified	925.52328	0.52328142	1163	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	0	0	8.5	4.5				1									1				15.103	15.103	2	0.055645	8880	DP690-13	94.662	25.279			NaN	NaN	NaN	0	0	Median	50825000	0	50825000	6743	1163	6329	13532;13533	33214;33215	33214		2	9606
ILDDDTIITTLENLK	1	0	Unmodified	1715.9193	0.91929665	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									2								24.051	24.051	2	0.0018572	19492	DP690-9	132.56	78.998			NaN	NaN	NaN	0	0	Median	1259600	1259600	0	6744	1264	6330	13534;13535	33216;33217;33218	33216		3	9606
ILDDDTIITTLENLKR	1	1	Unmodified	1872.0204	0.020407676	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	4	3.56	1	1							1								21.77	21.77	3	1.337E-07	16906	DP690-9	161.49	127.95			0.87059	1.0097	20.412	3	0	Plateau	21359000	11026000	10333000	6745	1264	6331	13536;13537;13538	33219;33220;33221;33222;33223;33224;33225	33224		7	9606
ILDDICVAK	1	0	Unmodified	1045.5478	0.54778161	1316	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	4	0				1													15.656	15.656	2	0.012699	9429	DP690-4	86.833	51.395			1.3046	1.429	NaN	1	0	Median	12871000	5325000	7546100	6746	1316	6332	13539	33226;33227	33226		2	9606
ILDDIFASLVQNK	1	0	Unmodified	1474.8031	0.80314468	2484	Q9Y4C1	KDM3A	Lysine-specific demethylase 3A	yes	yes	0	0	0	10	0										1							22.683	22.683	2	0.0013545	20306	DP690-10	120.06	81.705			0.77326	0.93731	NaN	1	0	Median	8699700	5243600	3456100	6747	2484	6333	13540	33228;33229	33228		2	9606
ILDDSDSNLSVVK	1	0	Unmodified	1403.7144	0.71438925	16	A6NKT7;Q7Z3J3	RGPD3;RGPD4	RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	yes	no	0	0	0	10.5	0.5										1	1						15.307	15.307	2	0.0032114	9951	DP690-10	141.88	0			NaN	NaN	NaN	0	0	Median	0	0	0	6748	16	6334	13541;13542	33230;33231	33230		2	9606
ILDEIEEHNIK	1	0	Unmodified	1351.6983	0.69834526	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	14	0														1			14.251	14.251	3	0.00011945	7789	DP690-14	128.03	107.03			0.73695	0.83729	NaN	1	0	Median	330530000	179930000	150610000	6749	1310	6335	13543	33232;33233;33234;33235	33232		4	9606
ILDIDIPMSVGIIDPR	0	1	Oxidation (M)	1781.9597	0.95972167	1160	Q12800	TFCP2	Alpha-globin transcription factor CP2	yes	yes	0	1	0	12	0												1					21.826	21.826	2	0.0011198	18161	DP690-12	101.89	101.89			0.73447	0.87963	NaN	1	0	Median	24811000	14243000	10568000	6750	1160	6336	13544	33236;33237;33238;33239	33238	1810	4	9606
ILDIVPPTFSALCPANPTCIYK	1	0	Unmodified	2489.2698	0.2698392	1143	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	11	0											1						22.637	22.637	2	0.043994	20103	DP690-11	46.319	30.932			0.44686	0.55142	NaN	1	0	Median	13135000	8934200	4201200	6751	1143	6337	13545	33240	33240		1	9606
ILDSVGIEADDDR	0	1	Unmodified	1416.6733	0.67325272	384	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	16	0																1	16.068	16.068	2	0.00010242	9957	DP690-16	163.9	128.25			0.95803	1.1142	NaN	1	0	Median	10984000	5986300	4998100	6752	384	6338	13546	33241;33242	33241		2	9606
ILDSVGIEADDDRLNK	1	1	Unmodified	1771.8952	0.89520716	384	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	1	13.3	3.77								1								2	15.561	15.561	2;3	3.5123E-23	9225	DP690-16	250.48	214.82			0.918	0.92823	12.179	3	0	Plateau	411230000	205810000	205420000	6753	384	6339	13547;13548;13549	33243;33244;33245;33246;33247;33248;33249;33250;33251;33252;33253	33249		11	9606
ILDTLGLLR	0	1	Unmodified	1012.6281	0.62808085	2032	Q9BWU0	SLC4A1AP	Kanadaptin	yes	yes	0	0	0	11	0											1						19.813	19.813	2	0.0018233	16339	DP690-11	116.9	58.299			0.98767	1.1856	NaN	1	0	Median	26801000	12964000	13836000	6754	2032	6340	13550	33254;33255	33254		2	9606
ILDVMYSR	0	1	Unmodified	995.511	0.51100218	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							16.203	16.203	2	0.053665	10078	DP690-9	150.84	96.869			0.83541	0.98144	3.0189	2	0	Median	274920000	143500000	131420000	6755	1046	6341	13551;13552	33256;33257	33257		0	9606
ILDWQPR	0	1	Unmodified	926.4974	0.49740102	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	10	0										1							16.062	16.062	2	0.0095086	11100	DP690-10	127.66	64.51			NaN	NaN	NaN	0	0	Median	37088000	37088000	0	6756	1167	6342	13553	33258;33259	33259		2	9606
ILDYSCSQDRDTQK	1	1	Unmodified	1727.7785	0.77846285	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	1	2	0		1															11.781	11.781	3	0.00011207	3954	DP690-2	113.07	87.351			1.2168	1.1978	NaN	1	0	Median	3942700	1704800	2237900	6757	1803	6343	13554	33260;33261	33260		2	9606
ILEDVVGVPEKK	2	0	Unmodified	1324.7602	0.76021723	2396	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	1	11	0											1						14.574	14.574	3	0.047831	8832	DP690-11	45.891	31.927			0.64347	0.74407	NaN	1	0	Median	83238000	50451000	32788000	6758	2396	6344	13555	33262	33262		1	9606
ILEENMK	1	0	Oxidation (M)	891.43717	0.43716853	99	O00755	WNT7A	Protein Wnt-7a	yes	yes	0	1	0	16	0																1	14.785	14.785	1	0.040389	8570	DP690-16	68.485	19.729			1.1308	1.3226	NaN	1	0	Median	20433000	9176600	11256000	6759	99	6345	13556	33263	33263	111	0	9606
ILEFFGLK	1	0	Unmodified	965.5586	0.5586043	402	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	12	0												1					20.947	20.947	2	0.032162	17007	DP690-12	104.11	22.73			NaN	NaN	NaN	0	0	Median	9703700	9703700	0	6760	402	6346	13557	33264;33265	33264		2	9606
ILEGGPILPK	1	0	Unmodified	1035.6328	0.63283187	2396	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	11	0											1						16.155	16.155	2	0.071992	11148	DP690-11	57.96	26.025			0.67924	0.82287	NaN	1	0	Median	67809000	45495000	22315000	6761	2396	6347	13558	33266	33266		1	9606
ILEIEDLFSSLK	1	0	Unmodified	1405.7704	0.77044757	1652	Q8N3R9	MPP5	MAGUK p55 subfamily member 5	yes	yes	0	0	0	11	0											1						24.134	24.134	2	0.0030403	21727	DP690-11	129.16	55.524			NaN	NaN	NaN	0	0	Median	6181900	0	6181900	6762	1652	6348	13559	33267;33268	33267		2	9606
ILELDQFK	1	0	Unmodified	1004.5542	0.5542472	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	12	0												1					17.978	17.978	2	0.0091358	13179	DP690-12	120.62	13.613			NaN	NaN	NaN	0	0	Median	67504000	67504000	0	6763	479	6349	13560	33269;33270;33271	33270		3	9606
ILELSGSSSEDSEK	1	0	Unmodified	1479.694	0.69404774	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7	3.56		1							1	1							14.089	14.089	2	2.9897E-15	7202	DP690-9	245.08	185.06			0.85376	0.94848	12.097	2	0	Median	582320000	301230000	281090000	6764	1046	6350	13561;13562;13563	33272;33273;33274;33275;33276;33277;33278;33279;33280;33281	33279		10	9606
ILELSGSSSEDSEKVIAGLYQR	1	1	Unmodified	2380.2122	0.21218421	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								18.999	18.999	3	4.753E-11	13621	DP690-9	160.55	138.56			0.80679	0.93573	NaN	1	0	Median	24688000	13151000	11536000	6765	1046	6351	13564	33282;33283	33282		2	9606
ILEPGLNILIPVLDR	0	1	Unmodified	1674.008	0.0079924964	2365	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	14	0														1			23.929	23.929	2	1.587E-05	20324	DP690-14	163.71	163.71			0.65265	0.78598	NaN	1	0	Median	70410000	42515000	27895000	6766	2365	6352	13565	33284;33285;33286;33287	33286		4	9606
ILEQEEEEEQAGKPGEPSK	2	0	Unmodified	2126.0015	0.0015227276	2039	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	1	11	0											1						12.437	12.437	3	1.1844E-11	5593	DP690-11	166.36	138.84			0.77106	0.91303	NaN	1	0	Median	41504000	24316000	17188000	6767	2039	6353	13566	33288;33289;33290;33291	33288		4	9606
ILETTTFFQR	0	1	Unmodified	1254.6608	0.66083754	2267	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	2	0		1															17.953	17.953	2	0.0044356	11298	DP690-2	124.98	66.003			NaN	NaN	NaN	0	0	Median	1968800	0	1968800	6768	2267	6354	13567	33292	33292		1	9606
ILEVNHVNVEGATHK	1	0	Unmodified	1658.874	0.87401821	1892	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	12	0												1					12.448	12.448	4	0.06202	5412	DP690-12	33.44	21.919			0.58691	0.68299	NaN	1	0	Median	104350000	58361000	45988000	6769	1892	6355	13568	33293	33293		1	9606
ILFIGGITAPTVR	0	1	Unmodified	1356.8129	0.8129215	780	P48651	PTDSS1	Phosphatidylserine synthase 1	yes	yes	0	0	0	9	0									1								20.378	20.378	2	0.0038649	15286	DP690-9	120.06	58.412			NaN	NaN	NaN	0	0	Median	0	0	0	6770	780	6356	13569	33294	33294		1	9606
ILFLDPSGK	1	0	Unmodified	988.55933	0.55933258	345	O95881	TXNDC12	Thioredoxin domain-containing protein 12	yes	yes	0	0	0	12	4								1								1	18.868	18.868	2	0.003138	12340	DP690-8	107.29	42.728			0.79187	0.89751	3.8049	2	0	Median	45873000	24501000	21372000	6771	345	6357	13570;13571	33295;33296;33297;33298;33299;33300;33301;33302;33303;33304;33305;33306;33307	33304		13	9606
ILFRPVASQLPR	0	2	Unmodified	1395.8351	0.83505393	660	P35232	PHB	Prohibitin	yes	yes	0	0	1	15	0															1		15.735	15.735	3	0.0070931	9762	DP690-15	80.014	39.247			0.6992	0.75849	NaN	1	0	Median	219150000	134020000	85133000	6772	660	6358	13572	33308;33309	33309		2	9606
ILFSSLILISK	1	0	Unmodified	1232.7744	0.77441073	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														22.18	22.18	2	0.0019997	17743	DP690-3	98.04	89.577			1.165	1.2218	NaN	1	0	Median	4855100	2195100	2660000	6773	892	6359	13573	33310	33310		1	9606
ILFVSQGSEIASQGR	0	1	Unmodified	1590.8366	0.83657007	2224	Q9NUQ7	UFSP2	Ufm1-specific protease 2	yes	yes	0	0	0	13	0													1				17.294	17.294	2	1.2695E-06	11869	DP690-13	181.4	148.88			0.70033	0.83679	NaN	1	0	Median	97979000	56711000	41268000	6774	2224	6360	13574	33311	33311		1	9606
ILGADTSVDLEETGR	0	1	Unmodified	1574.7788	0.77878042	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	11.8	1.47									1			2	2				16.94	16.94	2	6.8529E-47	11336	DP690-13	259.35	183.25			NaN	NaN	NaN	0	0	Median	165330000	90222000	75113000	6775	585	6361	13575;13576;13577;13578;13579	33312;33313;33314;33315;33316;33317;33318	33315		7	9606
ILGGLLSAYHLSGDSLFLR	0	1	Unmodified	2031.1153	0.11531111	2373	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	11	0											1						22.005	22.005	3	6.9314E-05	19278	DP690-11	110.32	96.697			0.54084	0.65454	NaN	1	0	Median	21467000	13935000	7531600	6776	2373	6362	13580	33319	33319		1	9606
ILGLAIESQDAGIK	1	0	Unmodified	1426.8031	0.80314468	66	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	15	0															1		18.609	18.609	2	6.1031E-05	13402	DP690-15	166.86	120.96			0.76953	0.90241	NaN	1	0	Median	34998000	18798000	16200000	6777	66	6363	13581	33320;33321;33322;33323	33321		4	9606
ILGLLDAYLK	1	0	Unmodified	1117.6747	0.67469669	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	11.7	3.64					1				1				2	1		1	22.837	22.837	2	0.00094671	17928	DP690-13	109.11	66.241			0.94864	1.067	11.235	6	0	Median	865380000	437520000	427860000	6778	598	6364	13582;13583;13584;13585;13586;13587	33324;33325;33326;33327;33328;33329;33330;33331;33332;33333;33334;33335;33336;33337;33338;33339;33340;33341;33342;33343;33344	33327		21	9606
ILGLLQTYFR	0	1	Unmodified	1222.7074	0.7073938	1640	Q8N140;Q9NXX6	EID3;NSMCE4A	EP300-interacting inhibitor of differentiation 3;Non-structural maintenance of chromosomes element 4 homolog A	yes	no	0	0	0	13	0													1				21.612	21.612	2	3.1696E-05	17495	DP690-13	210.1	192.29			0.85874	1.0544	NaN	1	0	Median	14608000	7150500	7457400	6779	1640	6365	13588	33345;33346;33347;33348;33349;33350	33347		6	9606
ILGPQGNTIK	1	0	Unmodified	1039.6026	0.60259438	1133	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	12	0												1					12.618	12.618	2	9.5017E-05	5462	DP690-12	146.81	50.9			0.73921	0.72976	NaN	1	0	Median	1319100000	749650000	569450000	6780	1133	6366	13589	33351;33352;33353;33354;33355;33356	33354		6	9606
ILGPQGNTIKR	1	1	Unmodified	1195.7037	0.70370541	1133	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	1	12.8	0.829												2	1	1			10.698	10.698	3	0.0016177	3121	DP690-12	152.54	102.73			7.2638	8.852	61.018	2	0	Median	18656000	3419300	15236000	6781	1133	6367	13590;13591;13592;13593	33357;33358;33359;33360	33357		2	9606
ILGSGISSSSVLHGMVFK	1	0	Oxidation (M)	1833.9659	0.96586969	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	4	0				1													17.07	17.07	3	8.2385E-05	11233	DP690-4	136.26	102.58			NaN	NaN	NaN	0	0	Median	25768000	0	25768000	6782	826	6368	13594	33361;33362	33362	1245	2	9606
ILGVMQDIR	0	1	Oxidation (M)	1059.5747	0.57466507	2567				yes	yes	0	1	0	8	0								1									17.385	17.385	2	0.0091926	10664	DP690-8	97.602	43.397	+		0.81313	0.86544	NaN	1	0	Median	51559000	28117000	23443000	6783	2567	6369	13595	33363	33363	2984	1	9606
ILHLLGQEGPK	1	0	Unmodified	1203.6976	0.69755739	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	7	4			1								1						14.23	14.23	3	0.00018245	7561	DP690-3	102.52	72.78			3.8182	4.2616	146.57	2	0	Median	165200000	49879000	115320000	6784	2515	6370	13596;13597	33364;33365;33366;33367;33368;33369	33369		6	9606
ILHLLTQEALSIHGVK	1	0	Unmodified	1771.0356	0.03560423	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	10.3	0.943									1		2						17.064	17.064	3;4	1.7224E-07	12322	DP690-11	148.7	133.94			0.94041	0.996	2.449	3	0	Plateau	657590000	335690000	321900000	6785	891	6371	13598;13599;13600	33370;33371;33372;33373;33374;33375;33376;33377;33378;33379;33380	33372		11	9606
ILHQHLGAPEER	0	1	Unmodified	1398.7368	0.73679645	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	10.3	1.25									1	1		1					10.465	10.465	3	0.00013165	2696	DP690-9	101.72	69.73			0.67544	0.78103	1.7671	3	0	Plateau	359720000	210110000	149620000	6786	2276	6372	13601;13602;13603	33381;33382;33383;33384	33383		4	9606
ILHRYEITFTLPPVHR	0	2	Unmodified	1991.1105	0.11050051	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	1	5	2.08		1	1		2		1	1									16.212	16.212	4;5	0.0011577	10623	DP690-5	112.15	94.858			NaN	NaN	NaN	0	0	Median	405900000	0	405900000	6787	2071	6373	13604;13605;13606;13607;13608;13609	33385;33386;33387;33388;33389;33390;33391;33392;33393;33394;33395	33390		11	9606
ILHSCPSVLR	0	1	Unmodified	1180.6387	0.63866231	1554	Q7Z6M4	MTERF4	Transcription termination factor 4, mitochondrial;mTERF domain-containing protein 2 processed	yes	yes	0	0	0	14	0														1			11.89	11.89	3	0.0036143	4574	DP690-14	82.831	61.993			1.4613	1.8351	NaN	1	0	Median	4379500	1386700	2992900	6788	1554	6374	13610	33396	33396		1	9606
ILHTLLASGEDALDFTQESEPSYISDVGPPGR	0	1	Unmodified	3413.6627	0.66269462	1643	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	11	0											1						21.226	21.226	3	0.002377	18165	DP690-11	59.855	59.855			NaN	NaN	NaN	0	0	Median	33498000	21754000	11743000	6789	1643	6375	13611	33397	33397		0	9606
ILIANTGMDTDKIK	2	0	Oxidation (M)	1547.8229	0.82289384	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	1	4	0				1													13.364	13.364	3	0.00010033	6357	DP690-4	113.54	83.603			1.5676	1.6362	NaN	1	0	Median	56027000	21850000	34176000	6790	1044	6376	13612	33398;33399;33400;33401;33402;33403	33398	1575	6	9606
ILIEFDTLK	1	0	Unmodified	1090.6274	0.62741214	1391	Q460N5	PARP14	Poly [ADP-ribose] polymerase 14	yes	yes	0	0	0	10	0										1							19.533	19.533	2	0.083259	16073	DP690-10	57.96	57.96			0.50243	0.61576	NaN	1	0	Median	30484000	19931000	10553000	6791	1391	6377	13613	33404	33404		1	9606
ILIFQTDFEDGIR	0	1	Unmodified	1565.809	0.80895834	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								21.404	21.404	2	0.059081	16504	DP690-9	100.48	54.648			NaN	NaN	NaN	0	0	Median	0	0	0	6792	1453	6378	13614	33405	33405		1	9606
ILIGNPGCTYK	1	0	Unmodified	1234.638	0.63799361	2064	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	4	0				1													14.789	14.789	2	0.0023869	8190	DP690-4	94.692	52.816			0.80076	0.86758	NaN	1	0	Median	26743000	14182000	12561000	6793	2064	6379	13615	33406;33407;33408;33409	33407		4	9606
ILIIGESGVGK	1	0	Unmodified	1084.6492	0.64921022	2175	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	10	3.56							1	1							1		16.527	16.527	2	0.0001982	10855	DP690-15	148.52	102.84			0.87776	0.97959	2.4036	3	0	Plateau	156810000	84617000	72191000	6794	2175	6380	13616;13617;13618	33410;33411;33412;33413;33414;33415;33416;33417;33418;33419;33420	33413		11	9606
ILILGLDGAGK	1	0	Unmodified	1068.6543	0.6542956	706	P40616	ARL1	ADP-ribosylation factor-like protein 1	yes	yes	0	0	0	8	0								1									18.921	18.921	2	0.00043185	12408	DP690-8	115.71	86.565			0.89608	1.0029	NaN	1	0	Median	13740000	7372400	6367400	6795	706	6381	13619	33421;33422;33423;33424	33421		4	9606
ILITIVEEVETLR	0	1	Unmodified	1526.892	0.89195969	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							23.158	23.158	2	1.2662E-10	18455	DP690-9	228.84	228.84			0.73772	0.91438	8.9907	2	0	Median	38671000	21907000	16764000	6796	1319	6382	13620;13621	33425;33426;33427;33428;33429;33430;33431;33432;33433	33430		9	9606
ILITIVEEVETLRQER	0	2	Unmodified	1940.0942	0.094241321	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								21.232	21.232	3	2.5235E-07	16251	DP690-9	220.9	199.67			0.8221	0.89112	NaN	1	0	Median	15102000	8129200	6972300	6797	1319	6383	13622	33434;33435;33436;33437	33434		4	9606
ILITTVPPNLR	0	1	Unmodified	1235.7602	0.76015765	1169	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	13.5	0.5													1	1			17.494	17.494	2	8.4468E-05	12215	DP690-13	129.42	101.6			0.71572	0.866	1.9361	2	0	Median	129480000	74007000	55469000	6798	1169	6384	13623;13624	33438;33439;33440;33441;33442;33443;33444	33439		7	9606
ILLAELEQLK	1	0	Unmodified	1168.7067	0.7067251	424	P08670	VIM	Vimentin	yes	yes	0	0	0	12.3	3.65				1								2	1	1	1	1	20.077	20.077	2	7.8669E-05	15881	DP690-12	176.09	74.486			0.75838	0.85244	6.3569	6	0	Median	2223100000	1199400000	1023699999.9999999	6799	424	6385	13625;13626;13627;13628;13629;13630;13631	33445;33446;33447;33448;33449;33450;33451;33452;33453;33454;33455;33456;33457;33458;33459;33460;33461;33462;33463;33464;33465;33466	33448		22	9606
ILLAELEQLKGQGK	2	0	Unmodified	1538.9032	0.90319307	424	P08670	VIM	Vimentin	yes	yes	0	0	1	11.3	3.35				1								2	2	1			17.566	17.566	2;3	1.5554E-08	12246	DP690-13	168.85	93.194			0.872	0.95306	17.868	6	0	Median	2732300000	1426800000	1305400000	6800	424	6386	13632;13633;13634;13635;13636;13637	33467;33468;33469;33470;33471;33472;33473;33474;33475;33476;33477;33478;33479;33480;33481;33482;33483;33484	33479		18	9606
ILLDHEKEWK	2	0	Unmodified	1309.703	0.7030367	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	12	0												1					12.856	12.856	3	0.0017428	5980	DP690-12	91.584	77.412			0.82735	0.94826	NaN	1	0	Median	61030000	35957000	25073000	6801	886	6387	13638	33485	33485		1	9606
ILLLGLDNAGK	1	0	Unmodified	1125.6758	0.67575932	677	P36405	ARL3	ADP-ribosylation factor-like protein 3	yes	yes	0	0	0	8	0								1									19.089	19.089	2	0.003607	12646	DP690-8	90.906	59.677			0.82164	0.94765	NaN	1	0	Median	3032300	1477700	1554600	6802	677	6388	13639	33486;33487;33488;33489	33487		4	9606
ILLLMKPSVLSR	1	1	Oxidation (M)	1384.8476	0.84759245	1772	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	1	1	2	0		1															16.516	16.516	3	0.014078	9510	DP690-2	64.64	64.64			1.547	1.5228	NaN	1	0	Median	2404100	953270	1450800	6803	1772	6389	13640	33490;33491	33490	2335	2	9606
ILLTQENPFFR	0	1	Unmodified	1376.7452	0.74523587	1141	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	3	0			1														20.272	20.272	2	1.4011E-06	15440	DP690-3	226.46	146.98			1.5645	1.7841	NaN	1	0	Median	25035000	7892500	17143000	6804	1141	6390	13641	33492;33493;33494	33493		3	9606
ILMAIDSELVDRDVVHTSEEAR	0	2	Oxidation (M)	2513.2432	0.24316676	182	O43592	XPOT	Exportin-T	yes	yes	0	1	1	3	0			1														16.916	16.916	4	0.00045224	11229	DP690-3	86.453	62.443			1.1281	1.1671	NaN	1	0	Median	38470000	14376000	24094000	6805	182	6391	13642	33495;33496;33497	33497	195	3	9606
ILMLGLDAAGK	1	0	Oxidation (M)	1116.6213	0.62128091	982	P62330	ARF6	ADP-ribosylation factor 6	yes	yes	0	1	0	16	0																1	17.261	17.261	2	0.0058261	11400	DP690-16	91.087	63.957			1.0789	1.2627	NaN	1	0	Median	16452000	7558300	8894000	6806	982	6392	13643	33498;33499;33500;33501;33502	33499	1499	5	9606
ILMVGLDAAGK	1	0	Oxidation (M)	1102.6056	0.60563084	524	P18085	ARF4	ADP-ribosylation factor 4	no	no	0	1	0	8	0								1									15.749	15.749	2	0.055005	9020	DP690-8	83.647	30.861			NaN	NaN	NaN	0	0	Median	4293700	4293700	0	6807	524	6393	13644	33503	33503		1	9606
ILNEMRDQYEQMAEK	1	1	2 Oxidation (M)	1928.8608	0.86081227	40;50	CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8	KRT16	Keratin, type I cytoskeletal 16	no	no	0	2	1	16	0																1	11.87	11.87	2	0.044423	4473	DP690-16	100.93	53.629		+	NaN	NaN	NaN	0	0	Median	2440500	2440500	0	6808	40;50	6394	13645	33504	33504		1	9606
ILNFLMHPK	1	0	Oxidation (M)	1127.6161	0.61613595	674	P35659	DEK	Protein DEK	yes	yes	0	1	0	13	0													1				15.227	15.227	3	0.023454	9064	DP690-13	65.465	43.137			0.95667	1.1105	NaN	1	0	Median	20320000	8704700	11615000	6809	674	6395	13646	33505;33506;33507;33508	33505	976	4	9606
ILNIFGVIK	1	0	Unmodified	1015.643	0.64300263	360	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	3	0			1														21.11	21.11	2	0.0061021	16567	DP690-3	95.352	95.352			1.2318	1.2944	NaN	1	0	Median	6902200	3014700	3887500	6810	360	6396	13647	33509;33510	33510		2	9606
ILNMDFETEVDK	1	0	Unmodified	1452.6806	0.68064628	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	13	0													2				18.64	18.64	2	0.0091181	13757	DP690-13	105.2	42.12			NaN	NaN	NaN	0	0	Median	32048000	17197000	14850000	6811	2090	6397	13648;13649	33511;33512	33512		2	9606
ILNPHGIPLGPLDFSTK	1	0	Unmodified	1818.004	0.003969751	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	13.5	0.5													1	1			19.189	19.189	3	0.00027099	14427	DP690-13	95.9	74.646			0.67821	0.7992	2.091	2	0	Median	162340000	99001000	63339000	6812	1589	6398	13650;13651	33513;33514;33515;33516;33517;33518;33519	33514		7	9606
ILNSFSVMPSPK	1	0	Unmodified	1318.6955	0.69550848	24	CON__ENSEMBL:ENSBTAP00000025008			yes	yes	0	0	0	4	0				1													17.184	17.184	2	0.061846	11562	DP690-4	57.598	16.199		+	0.91383	0.98165	NaN	1	0	Median	5130600	2678000	2452600	6813	24	6399	13652	33520	33520		1	
ILPEIIPILEEGLR	0	1	Unmodified	1603.9549	0.95489429	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	9	2.74		1							2	3	2						24.449	24.449	2	3.4194E-05	19984	DP690-9	132.32	132.32			0.84125	0.94264	35.262	2	0	Median	3190800	2086900	1103900	6814	1782	6400	13653;13654;13655;13656;13657;13658;13659;13660	33521;33522;33523;33524;33525;33526;33527;33528;33529;33530;33531;33532	33531		12	9606
ILPFQYVLCAATSPAVK	1	0	Unmodified	1877.0121	0.012091596	1160	Q12800	TFCP2	Alpha-globin transcription factor CP2	yes	yes	0	0	0	12	0												1					23.336	23.336	2	6.0763E-06	19752	DP690-12	133.15	133.15			0.7681	0.9276	NaN	1	0	Median	15141000	8252400	6888600	6815	1160	6401	13661	33533;33534;33535;33536	33535		4	9606
ILPQYIFNSR	0	1	Unmodified	1249.6819	0.68190733	228	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	10	0										1							18.12	18.12	2	0.007402	13987	DP690-10	87.308	54.467			0.76423	0.94682	NaN	1	0	Median	102280000	59804000	42478000	6816	228	6402	13662	33537;33538	33537		2	9606
ILPSLLQNR	0	1	Unmodified	1052.6342	0.63422886	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								16.756	16.756	2	0.051408	10861	DP690-9	67.032	31.737			0.65578	0.82051	NaN	1	0	Median	9068700	5489300	3579400	6817	1762	6403	13663	33539	33539		1	9606
ILPTLEAVAALGNK	1	0	Unmodified	1408.829	0.8289655	1169	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	11	3.56						1							1	1			20.519	20.519	2	1.8904E-05	16163	DP690-14	144.77	114.2			0.80505	0.9325	21.788	3	0	Plateau	277850000	150210000	127640000	6818	1169	6404	13664;13665;13666	33540;33541;33542;33543;33544;33545;33546;33547;33548;33549	33545		10	9606
ILPVFDEPPNPTNVEESLKR	1	1	Unmodified	2293.1954	0.19541193	2264	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	1	14	0														1			19.149	19.149	3	2.123E-05	14548	DP690-14	119.62	106.73			0.57309	0.68619	NaN	1	0	Median	78970000	51122000	27848000	6819	2264	6405	13667	33550;33551;33552	33550		3	9606
ILQDGGLQVVEK	1	0	Unmodified	1297.7242	0.72416608	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	4	0				1													15.539	15.539	2	0.00015774	9214	DP690-4	154.84	90.423			1.3431	1.4188	NaN	1	0	Median	84899000	33609000	51290000	6820	167	6406	13668	33553;33554;33555;33556;33557;33558	33556		6	9606
ILQDVADEEIAALPR	0	1	Unmodified	1651.8781	0.87810054	222	O60783	MRPS14	28S ribosomal protein S14, mitochondrial	yes	yes	0	0	0	16	0																1	19.646	19.646	2	1.7619E-05	14278	DP690-16	154.67	123.49			0.78502	0.91859	NaN	1	0	Median	5917700	3129300	2788300	6821	222	6407	13669	33559;33560	33560		2	9606
ILQEAGADISK	1	0	Unmodified	1143.6136	0.61355299	1829	Q96BW5	PTER	Phosphotriesterase-related protein	yes	yes	0	0	0	6	0						1											13.192	13.192	2	2.8071E-06	5888	DP690-6	201.61	114.94			0.95603	1.0711	NaN	1	0	Median	28961000	14443000	14518000	6822	1829	6408	13670	33561;33562;33563;33564	33563		4	9606
ILQEDPTNTAAR	0	1	Unmodified	1327.6732	0.67319314	1307	Q15006	EMC2	ER membrane protein complex subunit 2	yes	yes	0	0	0	14	0														1			12.258	12.258	2	0.0016132	5057	DP690-14	98.943	48.138			0.67729	0.82134	NaN	1	0	Median	23401000	13600000	9801400	6823	1307	6409	13671	33565;33566;33567	33566		3	9606
ILQETLNELDKR	1	1	Unmodified	1470.8042	0.80420731	857	P52630	STAT2	Signal transducer and activator of transcription 2	yes	yes	0	0	1	3	0			2														15.664	15.664	3	0.0068726	9525	DP690-3	69.864	69.864			1.0653	1.1815	NaN	1	0	Median	16366000	5146700	11219000	6824	857	6410	13672;13673	33568;33569	33568		2	9606
ILQEYITQEGHK	1	0	Unmodified	1457.7514	0.75144346	2040	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	13	0													1				13.773	13.773	3	3.2253E-05	7031	DP690-13	132.03	109.8			0.91674	1.0391	NaN	1	0	Median	128170000	61503000	66670000	6825	2040	6411	13674	33570;33571;33572;33573	33571		4	9606
ILQEYVEHQVDDAMMANAAQK	1	0	2 Oxidation (M)	2435.1097	0.10970974	418	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	2	0	4	0				1													16.254	16.254	3	0.0014754	10237	DP690-4	70.615	50.015			2.0515	2.2447	NaN	1	0	Median	17072000	6830500	10242000	6826	418	6412	13675	33574;33575	33575	473;474	2	9606
ILQIDSSVSFNTSHGSFPEVFTTYISLLADTK	1	0	Unmodified	3516.7664	0.76643141	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								25.181	25.181	3	1.1597E-07	20730	DP690-9	83.557	83.557			0.99643	1.1479	NaN	1	0	Median	1011600	486310	525240	6827	1046	6413	13676	33576;33577;33578;33579	33576		4	9606
ILQINKDDVTALHCK	2	0	Unmodified	1766.9349	0.93490391	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	1	11	0											2						14.109	14.109	3;4	0.00019401	8111	DP690-11	104.7	85.091			0.9455	1.0685	2.3533	2	0	Median	406590000	199650000	206940000	6828	288	6414	13677;13678	33580;33581;33582;33583;33584	33583		4	9606
ILQLVATGAVR	0	1	Unmodified	1139.7026	0.70264277	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	7	4			1								1						16.721	16.721	2	0.00053846	10884	DP690-3	112.3	89.555			1.548	1.8131	46.182	2	0	Median	59061000	23820000	35241000	6829	770	6415	13679;13680	33585;33586	33586		2	9606
ILQNEPLPER	0	1	Unmodified	1207.6561	0.65608651	340	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	12	0												1					13.741	13.741	2	0.0030248	7190	DP690-12	131.5	76.954			NaN	NaN	NaN	0	0	Median	20140000	0	20140000	6830	340	6416	13681	33587	33587		1	9606
ILQQGTEFDTLAETVLADR	0	1	Unmodified	2119.0797	0.079713469	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	10	0										1							22.809	22.809	2	0.0022198	20507	DP690-10	79.614	60.22			0.85485	1.0558	NaN	1	0	Median	6178200	3748000	2430200	6831	550	6417	13682	33588	33588		1	9606
ILQQGTEFDTLAETVLADRFER	0	2	Unmodified	2551.2918	0.29183151	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	1	9.5	0.5									1	1							22.149	22.149	3	3.0885E-05	19638	DP690-10	123.19	105.39			0.75689	0.90149	NaN	1	0	Median	52420000	30416000	22005000	6832	550	6418	13683;13684	33589;33590	33589		2	9606
ILREFLGK	1	1	Unmodified	974.5913	0.59130141	1647	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	1	13	0													1				13.416	13.416	2	0.053912	6404	DP690-13	97.068	2.4052			0.88256	0.94224	NaN	1	0	Median	244210000	128170000	116050000	6833	1647	6419	13685	33591	33591		0	9606
ILRPWQSSETR	0	2	Unmodified	1371.7259	0.72589741	1341	Q15637	SF1	Splicing factor 1	yes	yes	0	0	1	12	0												1					12.904	12.904	3	0.01	6187	DP690-12	77.674	56.374			1.2642	1.4334	NaN	1	0	Median	93291000	48011000	45280000	6834	1341	6420	13686	33592;33593	33593		2	9606
ILSEVTPDQSKPEN	1	0	Unmodified	1555.773	0.77296676	179	O43482	OIP5	Protein Mis18-beta	yes	yes	0	0	1	15	0															1		13.316	13.316	2	2.6679E-14	6496	DP690-15	246.08	193.91			0.7188	0.84794	NaN	1	0	Median	19624000	10406000	9218300	6835	179	6421	13687	33594;33595;33596;33597	33594		4	9606
ILSFVYPIR	0	1	Unmodified	1106.6488	0.64881629	1487	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	yes	yes	0	0	0	9.5	0.5									1	1							19.635	19.635	2	0.0017999	14389	DP690-9	117.16	67.802			0.67925	0.85039	NaN	1	0	Median	11742000	9495000	2246800	6836	1487	6422	13688;13689	33598;33599;33600	33599		3	9606
ILSGISTLLVLPTGAGK	1	0	Unmodified	1638.992	0.99200808	289	O94761	RECQL4	ATP-dependent DNA helicase Q4	yes	yes	0	0	0	6.5	3.5			1							1							21.949	21.949	2	0.00090327	19407	DP690-10	92.856	65.375			0.61428	0.69072	3.4333	2	0	Median	18481000	10869000	7611300	6837	289	6423	13690;13691	33601;33602;33603;33604	33601		4	9606
ILSGPFVQK	1	0	Unmodified	987.57532	0.57531699	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														15.223	15.223	2	0.00084139	8935	DP690-3	129.68	66.376			0.82783	0.85636	NaN	1	0	Median	84738000	45105000	39633000	6838	559	6424	13692	33605;33606;33607;33608;33609;33610;33611	33610		7	9606
ILSGVVTK	1	0	Unmodified	815.51165	0.5116541	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	13.5	3.2								1							2	1	12.519	12.519	2	0.001053	5239	DP690-16	139.31	47.687			0.94609	1.0325	7.9724	2	0	Median	564870000	291810000	273060000	6839	976	6425	13693;13694;13695;13696	33612;33613;33614;33615;33616	33615		3	9606
ILSISADIETIGEILK	1	0	Unmodified	1713.9764	0.9764176	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	12	0												1					25.193	25.193	2	0.0035141	21736	DP690-12	79.492	79.492			1.2507	1.4779	NaN	1	0	Median	1071700	526660	545060	6840	959	6426	13697	33617;33618	33618		2	9606
ILSISADIETIGEILKK	2	0	Unmodified	1842.0714	0.071380614	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	12	2.16									1				1	1			23.299	23.299	3	3.0857E-05	19437	DP690-13	121.13	106.87			0.89646	1.0161	14.833	2	0	Median	24737000	12684000	12054000	6841	959	6427	13698;13699;13700	33619;33620;33621;33622;33623;33624;33625	33620		7	9606
ILSLCPEIK	1	0	Unmodified	1071.5998	0.59981719	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	7	0							1										16.977	16.977	2	0.00045059	10758	DP690-7	153.04	92.064			0.7466	0.7901	NaN	1	0	Median	160360000	94724000	65631000	6842	296	6428	13701	33626;33627	33627		2	9606
ILSQSTDSLNMR	0	1	Oxidation (M)	1379.6715	0.67147858	1800	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	1	0	11	0											1						12.975	12.975	2	0.067035	6391	DP690-11	63.694	10.097			0.89825	1.0891	NaN	1	0	Median	20561000	10625000	9936600	6843	1800	6429	13702	33628	33628		1	9606
ILSSDDYGKDLTSVMR	1	1	Unmodified	1798.8771	0.87711426	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							17.495	17.495	3	0.00042222	13178	DP690-10	92.952	67.633			0.49114	0.61704	NaN	1	0	Median	79228000	57873000	21356000	6844	1080	6430	13703	33629	33629		1	9606
ILSTSTIGPEGVHQK	1	0	Unmodified	1565.8413	0.8413211	20	C9JA33;Q8IXS6	PALM2	Paralemmin-2	yes	no	0	0	0	10	0										1							13.063	13.063	3	0.050201	6749	DP690-10	45.614	33.591			0.69963	0.86345	NaN	1	0	Median	110620000	52813000	57803000	6845	20	6431	13704	33630	33630		1	9606
ILSVQGTEPLVLFK	1	0	Unmodified	1542.9021	0.90213044	2136	Q9H8H0	NOL11	Nucleolar protein 11	yes	yes	0	0	0	11	0											1						20.851	20.851	2	0.013599	17731	DP690-11	101.39	53.834			NaN	NaN	NaN	0	0	Median	23016000	23016000	0	6846	2136	6432	13705	33631	33631		1	9606
ILTATVDNANVLLQIDNAR	0	1	Unmodified	2053.1168	0.11676768	29	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	9	0									1								20.46	20.46	2	2.0692E-05	15386	DP690-9	163.27	108.62		+	NaN	NaN	NaN	0	0	Median	0	0	0	6847	29	6433	13706	33632	33632		1	9606
ILTFDQLALDSPK	1	0	Unmodified	1459.7922	0.79224564	1129	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	15	0															1		20.218	20.218	2	1.1565E-10	15402	DP690-15	238.73	154.12			0.87099	0.98505	NaN	1	0	Median	84897000	44659000	40238000	6848	1129	6434	13707	33633;33634;33635;33636	33635		4	9606
ILTGGADKNVVVFDK	2	0	Unmodified	1574.8668	0.86680757	2403	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	1	12	0												1					14.922	14.922	3	0.0037476	8928	DP690-12	107.35	65.664			NaN	NaN	NaN	0	0	Median	48876000	0	48876000	6849	2403	6435	13708	33637	33637		1	9606
ILTLTYVDK	1	0	Unmodified	1064.6118	0.61176208	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	12	0												1					16.835	16.835	2	0.0088566	11617	DP690-12	90.709	33.988			0.76215	0.87133	NaN	1	0	Median	137190000	68448000	68741000	6850	417	6436	13709	33638;33639;33640;33641	33639		4	9606
ILTMDGLIEDIK	1	0	Oxidation (M)	1375.7269	0.72686819	1055	P82921	MRPS21	28S ribosomal protein S21, mitochondrial	yes	yes	0	1	0	16	0																1	18.537	18.537	2	0.042572	12876	DP690-16	86.189	35.716			NaN	NaN	NaN	0	0	Median	5415200	5415200	0	6851	1055	6437	13710	33642	33642	1651	1	9606
ILTNFTGVMPPQFK	1	0	Oxidation (M)	1607.8381	0.83814998	10	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	1	0	10	0										1							18.908	18.908	2	0.0018347	15172	DP690-10	99.343	60.164			0.70562	0.86341	NaN	1	0	Median	28134000	14353000	13781000	6852	10	6438	13711	33643	33643	11	1	9606
ILTPIIFKEENLR	1	1	Unmodified	1584.9239	0.92392852	1050	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	1	14	0														1			17.889	17.889	3	6.7544E-05	12810	DP690-14	120.53	97.437			0.83482	1.0511	NaN	1	0	Median	31877000	17953000	13924000	6853	1050	6439	13712	33644	33644		1	9606
ILTTIEDLDQKK	2	0	Unmodified	1415.7872	0.78716026	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	1	3	0			1														15.046	15.046	3	0.013349	8723	DP690-3	61.235	33.182			0.89952	0.97662	NaN	1	0	Median	13570000	6126900	7443100	6854	317	6440	13713	33645;33646	33646		2	9606
ILVATNLFGR	0	1	Unmodified	1102.6499	0.64987892	63;1237	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	no	no	0	0	0	12	2.74									1	1			1			1	19.006	19.006	2	4.7609E-05	13666	DP690-9	171.38	118.75			0.88402	0.97681	4.9239	3	0	Plateau	467650000	251700000	215940000	6855	63;1237	6441	13714;13715;13716;13717	33647;33648;33649;33650;33651;33652;33653;33654;33655;33656;33657;33658	33656		12	9606
ILVDVSNPTEQEHLQHR	0	1	Unmodified	2014.0232	0.023201643	1455	Q658P3	STEAP3	Metalloreductase STEAP3	yes	yes	0	0	0	12.7	0.471												1	2				13.801	13.801	3;4	4.7159E-07	7032	DP690-13	140.27	124.05			0.69204	0.7938	3.4508	3	0	Plateau	361330000	205930000	155400000	6856	1455	6442	13718;13719;13720	33659;33660;33661;33662;33663;33664;33665	33663		7	9606
ILVELATFLEK	1	0	Unmodified	1274.7486	0.74858991	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	10	0										1							22.412	22.412	2	0.009285	19982	DP690-10	105.98	67.261			NaN	NaN	NaN	0	0	Median	6443800	6443800	0	6857	2276	6443	13721	33666;33667	33666		2	9606
ILVGPSEIGDASK	1	0	Unmodified	1284.6925	0.6925316	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	5	3.56		1	1							1							15.768	15.768	2	0.0027501	8594	DP690-2	130.01	61.635			0.98048	1.0336	NaN	1	0	Median	15682000	4727600	10954000	6858	1270	6444	13722;13723;13724	33668;33669;33670;33671	33669		4	9606
ILVGTNLVR	0	1	Unmodified	983.61277	0.61276513	1916	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	11	0											1						15.911	15.911	2	0.07786	10751	DP690-11	58.782	0			0.8461	1.0138	NaN	1	0	Median	56618000	31458000	25160000	6859	1916	6445	13725	33672	33672		1	9606
ILVLDDTNHER	0	1	Unmodified	1323.6783	0.67827852	436	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	13	0													1				13.601	13.601	3	0.0014096	6775	DP690-13	110.84	96.059			0.72225	0.87715	NaN	1	0	Median	52042000	29930000	22112000	6860	436	6446	13726	33673;33674;33675;33676	33674		4	9606
ILVLNGGYR	0	1	Unmodified	1003.5815	0.581465	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	13	0													1				15.712	15.712	2	0.0020863	9737	DP690-13	114.02	62.236			0.85904	1.0364	NaN	1	0	Median	76564000	39537000	37027000	6861	229	6447	13727	33677	33677		1	9606
ILVNILPYFAYEGTR	0	1	Unmodified	1767.956	0.95595693	1197	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	10	0										1							23.054	23.054	2	0.0043212	20731	DP690-10	118.9	86.746			NaN	NaN	NaN	0	0	Median	4952600	4952600	0	6862	1197	6448	13728	33678;33679;33680	33678		3	9606
ILVVIEPLLIDEDYYAR	0	1	Unmodified	2033.1085	0.1084944	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	9.5	0.5									1	1							23.841	23.841	2	0.00014584	21669	DP690-10	118.87	118.87			0.68283	0.82487	34.553	2	0	Median	9359200	5034200	4325000	6863	263	6449	13729;13730	33681;33682;33683;33684	33681		4	9606
ILYDILAFAK	1	0	Unmodified	1165.6747	0.67469669	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	10.3	3.06			1								4	1	1				21.867	21.867	2	0.0012673	19035	DP690-11	107.01	64.143			1.0663	1.2828	28.962	4	0	Median	140910000	79929000	60978000	6864	1613	6450	13731;13732;13733;13734;13735;13736;13737	33685;33686;33687;33688;33689;33690;33691;33692;33693;33694;33695;33696;33697;33698;33699;33700;33701	33685		17	9606
ILYEEVDESEVEVIHVPSPALEER	0	1	Unmodified	2780.3756	0.37562072	1564	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	3	0			1														19.696	19.696	3	0.00075047	14753	DP690-3	99.407	73.999			NaN	NaN	NaN	0	0	Median	4569600	0	4569600	6865	1564	6451	13738	33702;33703;33704	33703		3	9606
ILYMTDEVNDPSLTIK	1	0	Oxidation (M)	1866.9285	0.92848113	354	P00403	MT-CO2	Cytochrome c oxidase subunit 2	yes	yes	0	1	0	16	0																1	17.684	17.684	2	4.7301E-06	11922	DP690-16	139.32	112.91			0.82557	0.96175	NaN	1	0	Median	3724200	1778500	1945800	6866	354	6452	13739	33705;33706;33707;33708;33709;33710	33706	365	6	9606
ILYSQCGDVMR	0	1	Oxidation (M)	1356.6166	0.61660624	925	P60660;P14649	MYL6;MYL6B	Myosin light polypeptide 6;Myosin light chain 6B	yes	no	0	1	0	12	4								1								1	13.093	13.093	2	0.00019915	6038	DP690-16	136.99	97.141			0.94853	1.0613	18.127	2	0	Median	152590000	83789000	68806000	6867	925	6453	13740;13741	33711;33712;33713;33714;33715;33716	33713	1418	6	9606
IMALGNEDGSIEIFQIPNLK	1	0	Oxidation (M)	2217.1351	0.13511986	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	1	0	10	0										1							22.108	22.108	2	1.0896E-09	19607	DP690-10	156.2	135.92			0.94874	1.1559	NaN	1	0	Median	21462000	12359000	9103800	6868	1724	6454	13742	33717;33718;33719;33720	33717	2309	4	9606
IMATPEQVGK	1	0	Oxidation (M)	1088.5536	0.55359527	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	1	0	4	0				3													10.87	10.87	2	3.3959E-05	3337	DP690-4	158.07	106.74			NaN	NaN	NaN	0	0	Median	10299000	0	10299000	6869	479	6455	13743;13744;13745	33721;33722;33723;33724	33722	590	4	9606
IMCCVAQQASEK	1	0	Oxidation (M)	1439.6207	0.62070534	2005	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	1	0	3	0			1														10.78	10.78	2	0.021181	3144	DP690-3	93.667	61.061			NaN	NaN	NaN	0	0	Median	2325300	0	2325300	6870	2005	6456	13746	33725	33725	2539	1	9606
IMEFTTTLLNTSPEGWK	1	0	Unmodified	1966.971	0.97101464	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							21.558	21.558	2	1.7471E-22	16652	DP690-9	243.85	205.27			0.73583	0.94058	NaN	1	0	Median	30344000	8986900	21357000	6871	1046	6457	13747;13748	33726;33727;33728;33729;33730;33731	33731		6	9606
IMEFTTTLLNTSPEGWK	1	0	Oxidation (M)	1982.9659	0.96592926	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									1								20.266	20.266	2	5.8177E-28	15117	DP690-9	295.26	242.03			0.7028	0.85523	NaN	1	0	Median	32372000	18168000	14204000	6872	1046	6457	13749	33732;33733;33734;33735;33736	33732	1610	5	9606
IMEGPAFNFLDAPAVR	0	1	Oxidation (M)	1762.8712	0.87124102	466	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	1	0	14	0														1			20.397	20.397	2	0.0009072	16162	DP690-14	104.94	83.897			0.48492	0.59735	NaN	1	0	Median	13240000	9860600	3379300	6873	466	6458	13750	33737	33737	550	1	9606
IMEGPAFNFLDAPAVR	0	1	Unmodified	1746.8763	0.8763264	466	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	14	0														1			21.4	21.4	2	0.050544	17449	DP690-14	84.506	32.527			NaN	NaN	NaN	0	0	Median	4738100	4738100	0	6874	466	6458	13751	33738;33739	33739		2	9606
IMELLQVVPSCVASLDDVAETDR	0	1	Oxidation (M)	2575.251	0.25095425	1905	Q96NW4	ANKRD27	Ankyrin repeat domain-containing protein 27	yes	yes	0	1	0	16	0																1	21.182	21.182	2	0.023455	16120	DP690-16	57.136	57.136			0.49831	0.58538	NaN	1	0	Median	3332000	2156500	1175500	6875	1905	6459	13752	33740	33740	2442	1	9606
IMEVIDAITTTAQSHQR	0	1	Oxidation (M)	1928.9626	0.96257522	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	1	0	3	0			1														16.221	16.221	3	6.8686E-08	10245	DP690-3	164.63	22.435			1.0429	1.1249	NaN	1	0	Median	72120000	34628000	37492000	6876	518	6460	13753	33741;33742;33743;33744	33744	660	4	9606
IMEVIDAITTTAQSHQR	0	1	Unmodified	1912.9677	0.9676606	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	3	0			1														18.334	18.334	3	0.00017103	13011	DP690-3	104.16	12.567			1.1168	1.2838	NaN	1	0	Median	16844000	7983500	8860100	6877	518	6460	13754	33745;33746;33747;33748	33746		4	9606
IMFEVQDLK	1	0	Unmodified	1121.5791	0.57908174	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								18.364	18.364	2	0.043086	12806	DP690-9	69.628	9.1501			0.94206	1.1893	NaN	1	0	Median	6645900	2898800	3747100	6878	1264	6461	13755	33749	33749		1	9606
IMGIPEEEQMGLLR	0	1	2 Oxidation (M)	1646.8008	0.80077819	668	P35579	MYH9	Myosin-9	yes	yes	0	2	0	2	0		1															16.901	16.901	2	0.0066402	9898	DP690-2	83	61.369			1.1411	1.1884	NaN	1	0	Median	32987000	14984000	18003000	6879	668	6462	13756	33750;33751;33752;33753;33754;33755;33756;33757	33750	952;953	8	9606
IMGIPEEEQMGLLR	0	1	Oxidation (M)	1630.8059	0.80586357	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															18.516	18.516	2	0.002607	11889	DP690-2	92.866	63.315			0.87862	0.91821	NaN	1	0	Median	10994000	5485400	5508700	6880	668	6462	13757	33758;33759;33760;33761	33760	952;953	4	9606
IMGNIWDASLVVER	0	1	Oxidation (M)	1617.8185	0.81847717	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	1	0	10.5	0.5										1	1						19.943	19.943	2	0.0017115	16572	DP690-10	100.38	64.865			0.94188	1.145	14.59	2	0	Median	141330000	72742000	68593000	6881	272	6463	13758;13759	33762;33763;33764;33765;33766	33763	289	5	9606
IMGPNYTPGK	1	0	Unmodified	1076.5325	0.5324659	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	3	0			1														13.133	13.133	2	0.0019524	6156	DP690-3	102.51	54.665			0.95464	1.022	NaN	1	0	Median	22506000	11244000	11262000	6882	483	6464	13760	33767;33768;33769	33769		3	9606
IMGPNYTPGK	1	0	Oxidation (M)	1092.5274	0.52738052	483	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	3	0			1														11.938	11.938	2	0.074786	4604	DP690-3	78.334	40.174			NaN	NaN	NaN	0	0	Median	0	0	0	6883	483	6464	13761	33770	33770		1	9606
IMGPNYTPGKK	2	0	Unmodified	1204.6274	0.62742892	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	11	0											1						11.041	11.041	3	0.0027803	3605	DP690-11	72.531	51.523			0.7455	0.86863	NaN	1	0	Median	66611000	35595000	31016000	6884	483	6465	13762	33771;33772	33772		2	9606
IMHFPTWVDLK	1	0	Unmodified	1385.7166	0.71657828	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	11	0											1						19.309	19.309	3	0.020556	15706	DP690-11	45.653	26.376			0.47904	0.59001	NaN	1	0	Median	11233000	6738700	4494200	6885	1768	6466	13763	33773	33773		1	9606
IMLEDGNLHVTQGAGR	0	1	Oxidation (M)	1725.8468	0.84681718	1260	Q14195	DPYSL3	Dihydropyrimidinase-related protein 3	yes	yes	0	1	0	3.67	0.471			1	2													14.275	14.275	3	3.8639E-08	7548	DP690-4	171.26	86.363			0.55095	0.63235	NaN	1	0	Median	75793000	37307000	38486000	6886	1260	6467	13764;13765;13766	33774;33775;33776;33777;33778;33779	33779	1902	6	9606
IMLFTNEDNPHGNDSAK	1	0	Oxidation (M)	1917.8527	0.85269042	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	1	0	8	4				1								1					13.915	13.915	3	6.671E-13	7076	DP690-4	200.81	179.39			1.4314	1.5946	81.942	2	0	Median	159820000	71058000	88766000	6887	479	6468	13767;13768	33780;33781;33782;33783;33784;33785;33786;33787	33786	591	8	9606
IMLFTNEDNPHGNDSAK	1	0	Unmodified	1901.8578	0.8577758	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	4	0				1													14.669	14.669	3	0.0041606	8124	DP690-4	96.773	61.01			NaN	NaN	NaN	0	0	Median	9428000	0	9428000	6888	479	6468	13769	33788;33789	33789		2	9606
IMLGDEAALLEQK	1	0	Unmodified	1429.7487	0.74866627	2025	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	12	0												1					19.124	19.124	2	0.0018765	14736	DP690-12	110.54	110.54			0.85165	1.0146	NaN	1	0	Median	44814000	26594000	18220000	6889	2025	6469	13770	33790;33791	33790		2	9606
IMLGDEAALLEQK	1	0	Oxidation (M)	1445.7436	0.74358089	2025	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	1	0	12	0												1					18.493	18.493	2	1.0294E-17	13844	DP690-12	206.73	125.2			NaN	NaN	NaN	0	0	Median	45035000	45035000	0	6890	2025	6469	13771	33792;33793	33792	2559	2	9606
IMLPWDPTGK	1	0	Oxidation (M)	1172.59	0.58998078	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	7	0							1										19.486	19.486	2	0.01644	13952	DP690-7	83.783	43.781			1.2075	1.3099	NaN	1	0	Median	7644300	3926000	3718400	6891	569	6470	13772	33794	33794	757	1	9606
IMLPWDPTGK	1	0	Unmodified	1156.5951	0.59506616	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	7	0							1										20.355	20.355	2	0.023908	15075	DP690-7	72.928	45.625			1.0708	1.1503	NaN	1	0	Median	4468300	2036100	2432200	6892	569	6470	13773	33795;33796	33796		2	9606
IMMFIGGPATQGPGMVVGDELK	1	0	3 Oxidation (M)	2295.0949	0.094911302	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	3	0	3	0			2														18.524	18.524	2	0.0017646	13278	DP690-3	93.716	67.358			NaN	NaN	NaN	0	0	Median	0	0	0	6893	1332	6471	13774;13775	33797;33798	33798	2079;2080;2081	2	9606
IMNTFSVMPSPK	1	0	2 Oxidation (M)	1382.6574	0.65740842	2017;2010	Q9BVA1;Q13885;Q9BUF5	TUBB2B;TUBB2A;TUBB6	Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-6 chain	no	no	0	2	0	9	4					1								1				13.995	13.995	2	0.00019388	7322	DP690-13	123.96	105.18			0.98515	1.0567	16.162	2	0	Median	137910000	77099000	60814000	6894	2017;2010	6472	13776;13777	33799;33800;33801;33802;33803;33804;33805;33806;33807	33802	2544;2545	9	9606
IMNTFSVMPSPK	1	0	Oxidation (M)	1366.6625	0.6624938	2017;2010	Q9BVA1;Q13885;Q9BUF5	TUBB2B;TUBB2A;TUBB6	Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-6 chain	no	no	0	1	0	9	4					1								1				15.252	15.252	2	0.0029064	8370	DP690-5	97.472	80.84			0.94474	1.0181	18.952	2	0	Median	64895000	34872000	30023000	6895	2017;2010	6472	13778;13779	33808;33809;33810	33809	2544;2545	3	9606
IMNTFSVVPSPK	1	0	Oxidation (M)	1334.6904	0.69042311	1034;406;370;1217	P07437;P68371;Q13509;P04350	TUBB;TUBB4B;TUBB3;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	1	0	9.86	3.94					2	1							3	1			16.194	16.194	2	0.00022454	9173	DP690-5	123.96	89.996			0.74379	0.82214	14.484	5	0	Median	3906499999.9999995	2079199999.9999998	1827299999.9999998	6896	406;1034;1217;370	6473	13780;13781;13782;13783;13784;13785;13786	33811;33812;33813;33814;33815;33816;33817;33818;33819;33820;33821;33822;33823;33824;33825;33826	33820	388	16	9606
IMNTFSVVPSPK	1	0	Unmodified	1318.6955	0.69550848	1034;406;370;1217	P07437;P68371;Q13509;P04350	TUBB;TUBB4B;TUBB3;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	0	0	8	3.56					1	1							1				17.203	17.203	2	8.1106E-05	11614	DP690-13	177.78	107.68			0.84279	0.85884	7.0419	3	0	Plateau	2290300000	1236400000	1053799999.9999999	6897	406;1034;1217;370	6473	13787;13788;13789	33827;33828;33829;33830;33831;33832;33833;33834;33835;33836;33837;33838;33839;33840	33829		14	9606
IMQEYQLEQK	1	0	Oxidation (M)	1324.6333	0.63330216	2286	Q9P032	NDUFAF4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4	yes	yes	0	1	0	15	0															1		12.883	12.883	2	0.00020385	5869	DP690-15	140.11	100.05			0.58218	0.68636	NaN	1	0	Median	12745000	6749700	5995600	6898	2286	6474	13790	33841;33842	33841	2736	2	9606
IMQLLDVPPGEDK	1	0	Oxidation (M)	1469.7436	0.74358089	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	1	0	8	4				3								3					16.678	16.678	2	0.00020201	10413	DP690-12	150.46	117.37			1.0247	1.1366	25.177	2	0	Median	205780000	103550000	102220000	6899	2210	6475	13791;13792;13793;13794;13795;13796	33843;33844;33845;33846;33847;33848;33849;33850;33851;33852;33853;33854;33855	33846	2688	13	9606
IMQLLDVPPGEDK	1	0	Unmodified	1453.7487	0.74866627	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	12	0												2					19.033	19.033	2	3.6268E-05	12960	DP690-12	150.09	107.75			0.97849	1.1561	14.34	2	0	Median	134870000	68861000	66011000	6900	2210	6475	13797;13798	33856;33857;33858;33859;33860;33861;33862	33856		7	9606
IMQLLDVPPGEDKGGYVIK	2	0	Oxidation (M)	2087.0973	0.097277789	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	1	1	10	3.46				1								3					16.692	16.692	2;3	0.00016491	11391	DP690-12	128.99	85.621			0.67274	0.69747	NaN	1	0	Median	219870000	111890000	107980000	6901	2210	6476	13799;13800;13801;13802	33863;33864;33865;33866;33867;33868;33869	33864	2688	7	9606
IMQLLDVPPGEDKGGYVIK	2	0	Unmodified	2071.1024	0.10236317	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	1	12	0												1					18.084	18.084	3	0.0037052	13248	DP690-12	102.36	52.437			NaN	NaN	NaN	0	0	Median	38042000	38042000	0	6902	2210	6476	13803	33870;33871;33872	33870		3	9606
IMQQETSVPTLK	1	0	Oxidation (M)	1389.7174	0.71736614	1544	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	1	0	13	0													1				13.668	13.668	2	0.0001138	6860	DP690-13	131.82	93.515			0.70245	0.81527	NaN	1	0	Median	35926000	21493000	14432000	6903	1544	6477	13804	33873;33874;33875;33876;33877;33878	33875	2220	6	9606
IMQSPSPENLK	1	0	Oxidation (M)	1258.6227	0.62273747	2217	Q9NU22	MDN1	Midasin	yes	yes	0	1	0	9	0									1								12.006	12.006	2	0.00034256	4628	DP690-9	122.94	93.778			0.34554	0.43398	NaN	1	0	Median	5878600	3919600	1958900	6904	2217	6478	13805	33879;33880	33880	2696	2	9606
IMQSSSEVGYDAMAGDFVNMVEK	1	0	3 Oxidation (M)	2555.0866	0.08659104	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	3	0	4	0				1													17.668	17.668	2	0.00052506	12021	DP690-4	102.58	86.395			NaN	NaN	NaN	0	0	Median	1542500	0	1542500	6905	461	6479	13806	33881;33882	33882	534;535;536	2	9606
IMSIVDPNR	0	1	Oxidation (M)	1059.5383	0.53827956	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	1	0	3	0			1														13.161	13.161	2	0.028258	6228	DP690-3	82.452	41.023			1.4393	1.648	NaN	1	0	Median	14745000	6021000	8723500	6906	476	6480	13807	33883	33883	579	1	9606
IMVANIEEVLQR	0	1	Oxidation (M)	1429.7599	0.75989966	253	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	1	0	11	4							1								1		19.429	19.429	2	0.00017478	14481	DP690-15	154.85	103.4			1.3339	1.5268	51.185	2	0	Median	17495000	8239900	9255300	6907	253	6481	13808;13809	33884;33885;33886;33887;33888	33886	257	5	9606
IMVDMLDSDGSGK	1	0	2 Oxidation (M)	1398.6007	0.6006814	513	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	2	0	3	0			1														14.053	14.053	2	0.0063903	7224	DP690-3	85.813	69.142			1.1972	1.2828	NaN	1	0	Median	15215000	8173700	7041000	6908	513	6482	13810	33889;33890	33890	644;645	2	9606
IMVSRSEVDMLK	1	1	Unmodified	1406.7262	0.72615669	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	14	0														1			15.185	15.185	3	0.046243	9150	DP690-14	51.727	16.954			0.89088	1.1214	NaN	1	0	Median	30843000	16537000	14306000	6909	404	6483	13811	33891;33892;33893	33892		3	9606
IMVVGSTINDVLAVNTPK	1	0	Oxidation (M)	1886.0183	0.018299186	105	O14562	UBFD1	Ubiquitin domain-containing protein UBFD1	yes	yes	0	1	0	6	0						1											19.767	19.767	2	3.0634E-06	13762	DP690-6	138.02	106.54			0.69522	0.7782	NaN	1	0	Median	3902000	2048600	1853400	6910	105	6484	13812	33894;33895;33896;33897;33898;33899	33895	115	6	9606
IMYDLTSKPPGTTEWE	1	0	Oxidation (M)	1882.8659	0.86588087	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	1	1	4	0				1													17.867	17.867	2	0.00086112	12212	DP690-4	118.61	99.408			0.78681	0.85324	NaN	1	0	Median	9033700	5330200	3703500	6911	813	6485	13813	33900;33901;33902;33903	33901	1222	4	9606
IMYTVFEHTFHVR	0	1	Oxidation (M)	1694.8239	0.8238969	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	1	0	3	0			1														16.392	16.392	4	1.1651E-05	10469	DP690-3	176.78	162.91			0.98707	1.0499	NaN	1	0	Median	94022000	49118000	44904000	6912	720	6486	13814	33904;33905;33906;33907	33907	1053	4	9606
IMYTVFEHTFHVR	0	1	Unmodified	1678.829	0.82898227	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3	0			1														17.14	17.14	4	0.0001718	11495	DP690-3	113.61	96.613			1.0148	1.1434	NaN	1	0	Median	31515000	15916000	15599000	6913	720	6486	13815	33908	33908		1	9606
INDALSCEYECR	0	1	Unmodified	1528.6286	0.62862749	1398	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	13	0													1				14.472	14.472	2	4.4641E-10	7951	DP690-13	246.63	205.09			0.87491	1.0383	NaN	1	0	Median	111490000	57693000	53800000	6914	1398	6487	13816	33909;33910;33911;33912	33910		4	9606
INDRFEFPEQLPLDEFLQK	1	1	Unmodified	2377.1954	0.19541193	1804	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	1	3	0			1														22.076	22.076	3	0.022938	17547	DP690-3	52.318	30.21			1.3455	1.4923	NaN	1	0	Median	2831600	1260700	1570900	6915	1804	6488	13817	33913	33913		1	9606
INEAIVAVQAIIADPK	1	0	Unmodified	1663.9509	0.95087155	2426	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	11	4							1								1		21.85	21.85	2	0.00069363	16723	DP690-7	101.45	86.891			0.71328	0.78829	7.0479	2	0	Median	6194300	3627700	2566600	6916	2426	6489	13818;13819	33914;33915;33916;33917;33918;33919	33918		6	9606
INEAVECLLSLK	1	0	Unmodified	1387.7381	0.73810158	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	6	4		1								1							20.485	20.485	2	0.0017546	14108	DP690-2	97.452	53.801			1.2406	1.2207	NaN	1	0	Median	1849100	810320	1038800	6917	408	6490	13820;13821	33920;33921	33921		2	9606
INEELESQYQQSMDSK	1	0	Oxidation (M)	1943.8419	0.84185096	70	O00193	SMAP	Small acidic protein	yes	yes	0	1	0	7	0							1										13.884	13.884	2	0.023226	7009	DP690-7	100.73	60.573			NaN	NaN	NaN	0	0	Median	0	0	0	6918	70	6491	13822	33922	33922	79	1	9606
INEILSNALK	1	0	Unmodified	1113.6394	0.63937381	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11	0											1						16.779	16.779	2	8.587E-05	11930	DP690-11	161.79	118.71			0.81456	0.89204	NaN	1	0	Median	313620000	170350000	143270000	6919	849	6492	13823	33923;33924;33925;33926	33925		4	9606
INEWLTLVEK	1	0	Unmodified	1243.6812	0.68123863	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								20.155	20.155	2	0.0024862	15005	DP690-9	99.013	67.253			0.82791	1.0546	NaN	1	0	Median	8267400	4577500	3689900	6920	1264	6493	13824	33927;33928	33927		2	9606
INFDKYHPGYFGK	2	0	Unmodified	1584.7725	0.77251325	756	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	1	16	0																2	14.831	14.831	3;4	3.0644E-05	8355	DP690-16	134.38	110.89			1.2837	1.4482	66.713	2	0	Median	158580000	81724000	76861000	6921	756	6494	13825;13826	33929;33930;33931;33932;33933;33934	33932		6	9606
INFLSNNQCENIR	0	1	Unmodified	1620.7678	0.76783858	2311	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	11	0											1						16.463	16.463	2	0.019784	11525	DP690-11	97.163	49.269			NaN	NaN	NaN	0	0	Median	0	0	0	6922	2311	6495	13827	33935	33935		1	9606
INHSSDQGISSYTK	1	0	Unmodified	1535.7216	0.72159989	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								10.864	10.864	3	0.060212	3260	DP690-9	43.69	43.69			0.77843	0.98431	NaN	1	0	Median	6908900	3013900	3894900	6923	2272	6496	13828	33936	33936		1	9606
INIPPPSVNR	0	1	Unmodified	1105.6244	0.62439245	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							13.985	13.985	2	0.0082329	8063	DP690-10	86.136	86.136			0.71276	0.87929	NaN	1	0	Median	130550000	77785000	52763000	6924	1071	6497	13829	33937	33937		1	9606
INISEGNCPER	0	1	Unmodified	1287.5877	0.58774895	1326;1325	Q15366;P57721;Q15365	PCBP2;PCBP3;PCBP1	Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1	no	no	0	0	0	11.8	3.6						1	1		1				1	2	1	1	12.378	12.378	2	1.771E-06	4882	DP690-6	207.29	163.85			0.81874	0.89881	36.98	6	0	Median	3067499999.9999995	1648299999.9999998	1419200000	6925	1326;1325	6498	13830;13831;13832;13833;13834;13835;13836;13837	33938;33939;33940;33941;33942;33943;33944;33945;33946;33947;33948;33949;33950;33951;33952;33953;33954;33955;33956	33950		19	9606
INKELSDLAR	1	1	Unmodified	1157.6404	0.64043645	938	P61077	UBE2D3	Ubiquitin-conjugating enzyme E2 D3	yes	yes	0	0	1	16	0																2	12.856	12.856	2;3	7.1149E-05	5736	DP690-16	131.12	82.514			0.9344	1.0507	7.0228	2	0	Median	37764000	19912000	17852000	6926	938	6499	13838;13839	33957;33958;33959;33960;33961;33962	33961		6	9606
INLANCTSR	0	1	Unmodified	1047.5131	0.51312744	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	12	2.16										1	1				1		11.997	11.997	2	0.00023925	5263	DP690-10	163.15	68.489			0.87834	1.029	14.581	3	0	Median	405000000	213500000	191490000	6927	2190	6500	13840;13841;13842	33963;33964;33965;33966;33967;33968;33969;33970	33964		8	9606
INLGGSQAAGYLQR	0	1	Unmodified	1446.7579	0.75792582	2146	Q9H9F9	ACTR5	Actin-related protein 5	yes	yes	0	0	0	12	0												1					16.161	16.161	2	7.9961E-05	10621	DP690-12	155.11	95.315			NaN	NaN	NaN	0	0	Median	26500000	26500000	0	6928	2146	6501	13843	33971;33972	33972		2	9606
INLPAPNPDHVGGYK	1	0	Unmodified	1590.8154	0.8154407	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	12	0												1					14.582	14.582	3	8.3101E-06	8454	DP690-12	150.26	133.01			0.60482	0.67179	NaN	1	0	Median	214090000	135600000	78493000	6929	2359	6502	13844	33973;33974;33975;33976;33977	33974		5	9606
INLSDMQTEIK	1	0	Oxidation (M)	1306.6439	0.64386684	1877	Q96IW7	SEC22A	Vesicle-trafficking protein SEC22a	yes	yes	0	1	0	15	0															1		14.144	14.144	2	0.026719	7574	DP690-15	90.149	42.443			NaN	NaN	NaN	0	0	Median	22864000	22864000	0	6930	1877	6503	13845	33978	33978	2431	1	9606
INLWHLEITDR	0	1	Unmodified	1408.7463	0.7462985	1015;1458	P63151;Q66LE6	PPP2R2A;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	no	no	0	0	0	5	0					1												18.758	18.758	3	4.4614E-05	12792	DP690-5	152.07	116.39			1.9074	1.9743	NaN	1	0	Median	113510000	38287000	75223000	6931	1015;1458	6504	13846	33979;33980;33981;33982	33980		4	9606
INMLVIELK	1	0	Oxidation (M)	1087.6311	0.63111731	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	2	0		1															17.525	17.525	2	0.035393	10748	DP690-2	78.113	50.809			1.1395	1.1331	NaN	1	0	Median	3460700	1504100	1956600	6932	1264	6505	13847	33983	33983	1914	1	9606
INPYMSSPCHIEMILTEK	1	0	2 Oxidation (M)	2194.0108	0.010847322	529	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	2	0	15	0															1		17.615	17.615	3	0.00019377	12140	DP690-15	97.291	85.511			0.73937	0.87258	NaN	1	0	Median	23589000	12215000	11374000	6933	529	6506	13848	33984;33985;33986;33987	33984	680;681	4	9606
INPYMSSPCHIEMILTEKEQIVPKPEEEVAQK	3	0	2 Oxidation (M)	3798.8518	0.85183407	529	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	2	2	15	0															1		17.634	17.634	5	0.0012947	12231	DP690-15	51.845	42.554			0.56599	0.61655	NaN	1	0	Median	101150000	62928000	38221000	6934	529	6507	13849	33988;33989	33989	680;681	2	9606
INQMATAPDSQR	0	1	Unmodified	1330.6299	0.62994811	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							11.088	11.088	2	6.9836E-05	3828	DP690-10	142	88.22			0.92402	1.1573	NaN	1	0	Median	49376000	27900000	21476000	6935	2424	6508	13850	33990;33991;33992;33993	33992		4	9606
INQVFHGSCITEGNELTK	1	0	Unmodified	2045.984	0.98403894	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	8	3.03		1							2	2							14.779	14.779	2;3	3.1589E-33	9227	DP690-10	274.38	229.55			0.87351	1.0112	14.446	5	0	Median	1032299999.9999999	565150000	467170000	6936	1046	6509	13851;13852;13853;13854;13855	33994;33995;33996;33997;33998;33999;34000;34001;34002;34003;34004;34005;34006;34007;34008;34009;34010;34011	34001		18	9606
INREQFWEQAK	1	1	Unmodified	1447.7208	0.72081203	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	1	11	0											1						13.825	13.825	3	0.020676	7684	DP690-11	61.532	34.874			0.88856	1.0006	NaN	1	0	Median	170990000	87344000	83648000	6937	1365	6510	13856	34012	34012		1	9606
INSDDSNLYLTASK	1	0	Unmodified	1539.7417	0.74166663	2059	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	11	4							1								1		15.242	15.242	2	7.314800000000001E-24	9037	DP690-15	299.69	247.74			0.79532	0.86869	7.73	2	0	Median	194160000	108380000	85784000	6938	2059	6511	13857;13858	34013;34014;34015;34016;34017;34018	34016		6	9606
INTDVQLDSQEK	1	0	Unmodified	1388.6783	0.6783381	2022	Q9BVS5	TRMT61B	tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial	yes	yes	0	0	0	13	0													1				13.583	13.583	2	0.0018204	6760	DP690-13	126.03	79.569			NaN	NaN	NaN	0	0	Median	0	0	0	6939	2022	6512	13859	34019	34019		1	9606
INTLKEENTQEAAVLNGVS	1	0	Unmodified	2029.0328	0.032763277	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	11	0											1						16.707	16.707	2	1.7003E-12	11905	DP690-11	179.83	179.83			0.92189	1.1166	NaN	1	0	Median	66721000	37450000	29271000	6940	829	6513	13860	34020;34021;34022;34023	34021		4	9606
INTQWLLTSGTTEANAWK	1	0	Unmodified	2033.0218	0.02180466	58	CON__Streptavidin			yes	yes	0	0	0	7.2	4.31	1				1		1		1					1			20.482	20.482	2	8.6555E-28	15416	DP690-9	217.46	170.73		+	NaN	NaN	NaN	0	0	Median	38461000	38461000	0	6941	58	6514	13861;13862;13863;13864;13865	34024;34025;34026;34027;34028;34029;34030;34031;34032;34033	34032		10	
INVLHKPPYEHPK	2	0	Unmodified	1570.862	0.86199696	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	1	11	0											1						10.541	10.541	3	0.015233	2875	DP690-11	63.181	37.864			0.59889	0.68731	NaN	1	0	Median	103890000	65002000	38886000	6942	149	6515	13866	34034	34034		1	9606
INVLLQAFISQLK	1	0	Unmodified	1485.8919	0.89190011	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	9	0									1								24.239	24.239	2	0.0069927	19747	DP690-9	78.908	59.554			0.957	1.1481	NaN	1	0	Median	1995000	1088800	906180	6943	269	6516	13867	34035;34036;34037;34038	34036		4	9606
INVYYNEATGGK	1	0	Unmodified	1327.6408	0.64083038	1034	P68371	TUBB4B	Tubulin beta-4B chain	yes	yes	0	0	0	7.2	3.19				1	1	1		1					1				14.305	14.305	2	3.0354E-10	7705	DP690-13	214.71	176.89			1.0529	1.0562	13.133	3	0	Plateau	2009899999.9999998	962790000	1047099999.9999999	6944	1034	6517	13868;13869;13870;13871;13872	34039;34040;34041;34042;34043;34044;34045;34046;34047;34048;34049;34050;34051;34052	34041		14	9606
INVYYNEATGNK	1	0	Unmodified	1384.6623	0.6622941	2017	Q9BVA1	TUBB2B	Tubulin beta-2B chain	yes	yes	0	0	0	9	4					1								1				14.103	14.103	2	4.0333E-11	7543	DP690-13	182.16	144.61			1.0561	1.0522	NaN	1	0	Median	145840000	38559000	107280000	6945	2017	6518	13873;13874	34053;34054;34055;34056;34057;34058	34054		6	9606
INVYYNESSSQK	1	0	Unmodified	1430.6678	0.66777341	2010	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	7.67	3.77					2								1				13.329	13.329	2	2.4713E-05	6114	DP690-5	188.91	137.38			1.021	1.0886	3.5471	2	0	Median	197250000	97602000	99648000	6946	2010	6519	13875;13876;13877	34059;34060;34061;34062;34063;34064;34065;34066;34067;34068	34065		10	9606
IPAASAAAMNLASAR	0	1	Oxidation (M)	1429.7347	0.73474754	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	1	0	9	0									1								14.79	14.79	2	0.0029165	8234	DP690-9	90.793	66.704			0.94933	1.1859	NaN	1	0	Median	11922000	6012800	5909700	6947	2422	6520	13878	34069;34070;34071;34072	34071	2851	4	9606
IPAFLNVVDIAGLVK	1	0	Unmodified	1567.9338	0.93376492	2216	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	9.75	3.77						2							1	1			24.292	24.292	2	0.0002861	20563	DP690-13	113.24	113.24			0.73754	0.84192	17.639	2	0	Median	5276000	2763900	2512100	6948	2216	6521	13879;13880;13881;13882	34073;34074;34075;34076;34077;34078;34079	34073		7	9606
IPAHQVLYSTSGENASGK	1	0	Unmodified	1857.9221	0.92209062	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	10	0										1							12.24	12.24	3	4.9431E-05	5481	DP690-10	117.53	117.53			0.80037	0.9656	NaN	1	0	Median	204040000	113210000	90829000	6949	2276	6522	13883	34080;34081;34082;34083	34081		4	9606
IPAIFSPAFYTSR	0	1	Unmodified	1468.7715	0.77145062	1172	Q12933	TRAF2	TNF receptor-associated factor 2	yes	yes	0	0	0	9.33	3.77				1								2					21.203	21.203	2	5.6787E-05	16113	DP690-4	125.75	93.529			0.59945	0.70963	27.715	2	0	Median	27059000	10945000	16115000	6950	1172	6523	13884;13885;13886	34084;34085;34086;34087;34088;34089;34090;34091	34091		8	9606
IPALDLLIK	1	0	Unmodified	994.64267	0.64266828	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	10.3	1.25									1	1		1					20.709	20.709	2	0.00085616	15843	DP690-9	128.61	27.28			0.74767	0.92326	6.0286	3	0	Plateau	179350000	95290000	84057000	6951	1046	6524	13887;13888;13889	34092;34093;34094;34095;34096;34097;34098;34099;34100;34101;34102;34103;34104	34103		13	9606
IPANQLAELWLK	1	0	Unmodified	1394.7922	0.79218606	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	10	0										2							21.081	21.081	2	0.00025019	18260	DP690-10	166.86	130.55			0.61883	0.76071	NaN	1	0	Median	43866000	25176000	18690000	6952	2276	6525	13890;13891	34105;34106;34107;34108	34106		4	9606
IPAYFVTVSDPAVPPGEDPDGR	0	1	Unmodified	2298.1168	0.11682726	597	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	11	0											1						19.751	19.751	2	8.6729E-11	16246	DP690-11	160.87	136.79			0.51511	0.62949	NaN	1	0	Median	17115000	10578000	6537400	6953	597	6526	13892	34109;34110;34111	34110		3	9606
IPCDSPQSDPVDTPTSTK	1	0	Unmodified	1943.8782	0.87823647	749	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	10	0										1							13.275	13.275	2	1.5848E-06	7032	DP690-10	158.31	126.83			NaN	NaN	NaN	0	0	Median	7940900	7940900	0	6954	749	6527	13893	34112	34112		1	9606
IPDEFDNDPILVQQLR	0	1	Unmodified	1910.9738	0.97379183	1390	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	14	0														1			20.319	20.319	2	4.3725999999999995E-22	15976	DP690-14	246.63	191.86			0.67033	0.81061	NaN	1	0	Median	53070000	28475000	24594000	6955	1390	6528	13894	34113;34114;34115;34116	34113		4	9606
IPDIVLWPTCHDDVVK	1	0	Unmodified	1905.9659	0.96586969	61	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	12	0												1					19.455	19.455	3	0.00027678	15141	DP690-12	98.654	81.667			0.46036	0.55341	NaN	1	0	Median	20660000	13800000	6859000	6956	61	6529	13895	34117;34118	34117		2	9606
IPDQLVILDMK	1	0	Oxidation (M)	1299.7108	0.7108242	802	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	0	1	0	16	0																1	18.322	18.322	2	0.017919	12679	DP690-16	76.927	21.466			0.71947	0.8428	NaN	1	0	Median	10471000	5985900	4485400	6957	802	6530	13896	34119	34119	1210	1	9606
IPDRPYSLFEGMAGAIHFLSDVLGPETSR	0	2	Oxidation (M)	3190.5757	0.57573428	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	1	1	5	0					1												22.678	22.678	4	3.6448E-12	17632	DP690-5	148.84	135.07			0.58048	0.57328	NaN	1	0	Median	91010000	50783000	40226000	6958	2208	6531	13897	34120;34121;34122;34123	34123	2683	4	9606
IPDRPYSLFEGMAGAIHFLSDVLGPETSR	0	2	Unmodified	3174.5808	0.58081966	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	1	5	0					1												26.119	26.119	4	0.050108	21647	DP690-5	47.757	25.002			NaN	NaN	NaN	0	0	Median	11987000	11987000	0	6959	2208	6531	13898	34124;34125	34124		2	9606
IPEDILQLLSK	1	0	Unmodified	1267.7388	0.73875351	1612	Q8IX90	SKA3	Spindle and kinetochore-associated protein 3	yes	yes	0	0	0	13	0													1				22.232	22.232	2	8.3955E-05	18247	DP690-13	136.96	98.183			0.78515	0.9105	NaN	1	0	Median	18212000	9915100	8296900	6960	1612	6532	13899	34126;34127;34128;34129	34129		4	9606
IPEEFNVFNLIQEMR	0	1	Oxidation (M)	1893.9295	0.92948418	1116	Q05209	PTPN12	Tyrosine-protein phosphatase non-receptor type 12	yes	yes	0	1	0	3	0			1														23.027	23.027	2	0.003943	18608	DP690-3	88.163	65.071			0.75304	0.82406	NaN	1	0	Median	3283600	1957600	1325900	6961	1116	6533	13900	34130;34131;34132;34133	34130	1732	4	9606
IPEINSSDMSAHVTSPSGR	0	1	Oxidation (M)	1999.9269	0.926918	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	7.75	3.34		1							1	2							13.078	13.078	2;3	1.4094E-05	6633	DP690-10	124.77	112.86			0.60708	0.7136	5.1215	3	0	Plateau	291360000	180630000	110730000	6962	250	6534	13901;13902;13903;13904	34134;34135;34136;34137;34138;34139;34140;34141;34142;34143;34144;34145	34134	243	12	9606
IPEINSSDMSAHVTSPSGR	0	1	Unmodified	1983.932	0.93200337	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							14.893	14.893	3	1.4798E-10	9346	DP690-10	158.45	144.14			2.2328	2.7858	NaN	1	0	Median	69592000	19479000	50114000	6963	250	6534	13905	34146;34147;34148;34149	34148		4	9606
IPEISIQDMTAQVTSPSGK	1	0	Unmodified	2001.0089	0.0088567119	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	11	0.816										1	1	1					20.129	20.129	2	5.5251E-17	16875	DP690-10	212.43	183.09			0.69104	0.85157	NaN	1	0	Median	65368000	38705000	26664000	6964	549	6535	13906;13907;13908	34150;34151;34152;34153;34154;34155	34150		6	9606
IPEISIQDMTAQVTSPSGK	1	0	Oxidation (M)	2017.0038	0.003771334	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	9.22	2.7		1							2	4	1	1					17.017	17.017	2	1.7670999999999997E-21	12343	DP690-10	226.7	153.74			0.60754	0.74008	13.175	3	0	Median	193700000	167970000	25729000	6965	549	6535	13909;13910;13911;13912;13913;13914;13915;13916;13917	34156;34157;34158;34159;34160;34161;34162;34163;34164;34165;34166;34167;34168;34169;34170;34171;34172;34173;34174;34175	34159	708	20	9606
IPELLASGMVDNMTK	1	0	2 Oxidation (M)	1649.8004	0.80044384	628	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	2	0	6	0						1											16.465	16.465	2	7.0168E-05	9845	DP690-6	125.36	100.29			0.53862	0.6143	NaN	1	0	Median	8104200	5061000	3043200	6966	628	6536	13918	34176;34177;34178;34179	34178	865;866	4	9606
IPELLSLRPR	0	2	Unmodified	1192.7292	0.72919187	1999	Q9BTD8	RBM42	RNA-binding protein 42	yes	yes	0	0	1	12	0												1					16.809	16.809	3	0.0044949	11546	DP690-12	134.25	64.147			NaN	NaN	NaN	0	0	Median	8492000	8492000	0	6967	1999	6537	13919	34180;34181	34180		2	9606
IPEQIIVVDSSMVENEVIK	1	0	Oxidation (M)	2157.1239	0.12388647	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	1	0	10	0										1							20.404	20.404	2	0.00014927	17349	DP690-10	134.88	99.678			NaN	NaN	NaN	0	0	Median	13079000	13079000	0	6968	1158	6538	13920	34182	34182	1809	1	9606
IPEVGLSSRMQR	0	2	Oxidation (M)	1387.7242	0.72418285	266	O75570	MTRF1	Peptide chain release factor 1, mitochondrial	yes	yes	0	1	1	12	0												1					15.493	15.493	3	0.024469	9655	DP690-12	57.149	30.177			0.69499	0.788	NaN	1	0	Median	203560000	123280000	80281000	6969	266	6539	13921	34183;34184	34183	269	2	9606
IPFYGSYTEMDPVIIASEGVEK	1	0	Oxidation (M)	2460.177	0.17704425	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	1	0	13	0													1				20.572	20.572	2	6.8419E-19	16212	DP690-13	182.7	159.24			0.44619	0.50909	NaN	1	0	Median	9995200	6055900	3939300	6970	934	6540	13922	34185	34185	1448	1	9606
IPGGIIEDSCVLR	0	1	Unmodified	1427.7442	0.74424959	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	8	4				1								1					17.792	17.792	2	3.3626E-05	12041	DP690-4	176.6	111.44			1.0397	1.2012	39.318	2	0	Median	90920000	45078000	45842000	6971	791	6541	13923;13924	34186;34187;34188;34189;34190;34191	34188		6	9606
IPGIIIAASAVR	0	1	Unmodified	1179.7339	0.7339429	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	10.3	3.41			1						1		3	1			1		18.582	18.582	2	7.4363E-05	14527	DP690-11	173.39	166.26			0.7692	0.92025	12.293	6	0	Median	381310000	214100000	167210000	6972	652	6542	13925;13926;13927;13928;13929;13930;13931	34192;34193;34194;34195;34196;34197;34198;34199;34200;34201;34202;34203;34204;34205;34206;34207	34194		16	9606
IPGLLGVFQK	1	0	Unmodified	1070.6488	0.64881629	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														20.175	20.175	2	0.00063507	15390	DP690-3	114.78	64.08			1.2278	1.2877	NaN	1	0	Median	4907800	2084900	2823000	6973	892	6543	13932	34208;34209	34208		2	9606
IPGLLSPHPLLQLSYTATDR	0	1	Unmodified	2191.2001	0.20010338	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		2															20.047	20.047	3	8.1629E-18	13536	DP690-2	197.67	197.67			0.97013	1.0078	NaN	1	0	Median	89453000	41343000	48111000	6974	789	6544	13933;13934	34210;34211;34212;34213	34212		4	9606
IPGMLIIDTPGHESFSNLR	0	1	Oxidation (M)	2112.0674	0.067374644	228	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	1	0	10	0										1							17.856	17.856	3	1.014E-06	13693	DP690-10	134.76	112.32			0.74821	0.9289	NaN	1	0	Median	90926000	52854000	38073000	6975	228	6545	13935	34214;34215	34215	229	2	9606
IPGMLIIDTPGHESFSNLR	0	1	Unmodified	2096.0725	0.072460022	228	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	10	0										1							19.069	19.069	3	9.5524E-05	15440	DP690-10	107.62	91.608			0.69463	0.86376	NaN	1	0	Median	83268000	47975000	35294000	6976	228	6545	13936	34216	34216		1	9606
IPGNWFQMVSAQER	0	1	Unmodified	1661.7984	0.79841043	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										1							20.392	20.392	2	0.0058093	17436	DP690-10	79.23	56.891			0.86528	1.0761	NaN	1	0	Median	82698000	44159000	38539000	6977	1270	6546	13937	34217	34217		1	9606
IPGNWFQMVSAQER	0	1	Oxidation (M)	1677.7933	0.79332505	1270	Q14315	FLNC	Filamin-C	yes	yes	0	1	0	10	0										1							18.68	18.68	2	0.022763	14864	DP690-10	89.805	57.281			NaN	NaN	NaN	0	0	Median	59366000	0	59366000	6978	1270	6546	13938	34218;34219	34218	1947	2	9606
IPHLAIHLQR	0	1	Unmodified	1196.7142	0.71421051	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	5	0					1												13.805	13.805	3	0.0010385	6625	DP690-5	107.69	92.682			2.4018	2.4703	NaN	1	0	Median	224520000	72910000	151610000	6979	2385	6547	13939	34220;34221;34222;34223	34223		4	9606
IPIGFIPLGETSSLSHTLFAESGNK	1	0	Unmodified	2614.3643	0.36426817	1406	Q53H12	AGK	Acylglycerol kinase, mitochondrial	yes	yes	0	0	0	13	0													1				21.875	21.875	3	8.4447E-07	17812	DP690-13	132.66	120.64			1.0451	1.2128	NaN	1	0	Median	19762000	9516100	10246000	6980	1406	6548	13940	34224;34225;34226;34227	34226		4	9606
IPLAEWESR	0	1	Unmodified	1099.5662	0.56620887	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	13	0													1				16.692	16.692	2	0.00064621	11048	DP690-13	143.89	85.105			0.76039	0.85503	NaN	1	0	Median	311600000	177010000	134580000	6981	637	6549	13941	34228;34229;34230;34231	34229		4	9606
IPLGGLSSMENR	0	1	Oxidation (M)	1288.6445	0.64453555	1726	Q8TEV8	SMCR5	Smith-Magenis syndrome chromosomal region candidate gene 5 protein	yes	yes	0	1	0	15	0															1		18.439	18.439	2	0.017932	13261	DP690-15	74.92	30.717			0.95832	1.1051	NaN	1	0	Median	7591800	3403900	4187900	6982	1726	6550	13942	34232	34232	2311	1	9606
IPLGLDLK	1	0	Unmodified	867.54295	0.54295423	1609	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	11	0											1						17.816	17.816	2	0.070812	13453	DP690-11	89.369	50.998			NaN	NaN	NaN	0	0	Median	11100000	11100000	0	6983	1609	6551	13943	34233	34233		1	9606
IPLLSDLTHQISK	1	0	Unmodified	1463.8348	0.83477916	1188	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	7	0							1										18.846	18.846	3	1.7595E-05	13184	DP690-7	145.31	128.78			1.9172	2.082	NaN	1	0	Median	22505000	7921700	14583000	6984	1188	6552	13944	34234;34235	34235		2	9606
IPMPDFDLHLK	1	0	Oxidation (M)	1340.6799	0.67985842	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9	0									1								17.356	17.356	3	0.024065	11593	DP690-9	59.265	37.869			0.64562	0.78738	NaN	1	0	Median	31338000	17558000	13780000	6985	1145	6553	13945	34236;34237	34236	1776	2	9606
IPMPDFDLHLK	1	0	Unmodified	1324.6849	0.6849438	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								19	19	3	0.061992	13628	DP690-9	62.166	36.05			NaN	NaN	NaN	0	0	Median	3146800	0	3146800	6986	1145	6553	13946	34238	34238		1	9606
IPNFLHLTPVAIK	1	0	Unmodified	1461.8708	0.87077073	1052	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	14	0														1			19.221	19.221	3	0.014762	14622	DP690-14	60.937	60.937			0.68728	0.83446	NaN	1	0	Median	61275000	35722000	25553000	6987	1052	6554	13947	34239	34239		1	9606
IPPSEMFLSETDKYSK	2	0	Oxidation (M)	1886.8972	0.897181	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	1	1	3	0			1														15.768	15.768	3	0.00037368	9679	DP690-3	94.007	77.158			0.71361	0.76871	NaN	1	0	Median	30379000	17382000	12997000	6988	797	6555	13948	34240;34241;34242;34243;34244	34243	1208	5	9606
IPPSSAPTVLSVPAGTTIVK	1	0	Unmodified	1934.1088	0.10882875	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	11	0											1						18.224	18.224	2	0.001194	14078	DP690-11	87.824	87.824			0.61228	0.7467	NaN	1	0	Median	29573000	17581000	11992000	6989	837	6556	13949	34245;34246;34247	34246		3	9606
IPPYHYIHVLDQNSNVSR	0	1	Unmodified	2151.0861	0.086136251	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														15.174	15.174	4	0.0052356	8889	DP690-3	59.606	42.103			0.53649	0.60961	NaN	1	0	Median	26811000	13119000	13693000	6990	1293	6557	13950	34248;34249;34250	34248		3	9606
IPQQLESK	1	0	Unmodified	941.5182	0.51819605	228	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	10	0										1							11.153	11.153	2	0.056395	3911	DP690-10	104.21	41.745			NaN	NaN	NaN	0	0	Median	0	0	0	6991	228	6558	13951	34251	34251		1	9606
IPSAVGYQPTLATDMGTMQER	0	1	2 Oxidation (M)	2297.0668	0.066782296	392	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	2	0	13	0													1				16.017	16.017	2	0.00014266	10170	DP690-13	119	90.209			0.84506	1.0419	NaN	1	0	Median	21113000	10902000	10211000	6992	392	6559	13952	34252;34253;34254;34255	34253	420;421	4	9606
IPSAVGYQPTLATDMGTMQER	0	1	Oxidation (M)	2281.0719	0.071867674	392	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	13	0													1				17.495	17.495	2	0.0072023	12154	DP690-13	102.29	63.495			NaN	NaN	NaN	0	0	Median	0	0	0	6993	392	6559	13953	34256	34256	420;421	1	9606
IPSNILLPEDK	1	0	Unmodified	1237.6918	0.69180331	2083	Q9H081	MIS12	Protein MIS12 homolog	yes	yes	0	0	0	15	0															1		17.256	17.256	2	0.00027319	11755	DP690-15	155.53	129.96			0.72395	0.85448	NaN	1	0	Median	24744000	14159000	10585000	6994	2083	6560	13954	34257;34258;34259;34260	34259		4	9606
IPSPLGYAAIPIK	1	0	Unmodified	1338.7911	0.79112343	2460	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	14	0														1			19.43	19.43	2	0.037336	14936	DP690-14	63.426	40.107			0.66042	0.79707	NaN	1	0	Median	28643000	20493000	8150100	6995	2460	6561	13955	34261	34261		1	9606
IPTPLNTSGVQVICMK	1	0	Oxidation (M)	1772.9165	0.91647665	1836	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	1	0	13	0													1				17.367	17.367	2	7.6801E-07	11988	DP690-13	161.87	103.73			0.79751	0.92629	NaN	1	0	Median	33823000	18654000	15169000	6996	1836	6562	13956	34262;34263	34262	2410	2	9606
IPVDTYNNILTVLK	1	0	Unmodified	1601.9029	0.90285872	1916	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	11	0											1						21.275	21.275	2	7.3801E-07	18313	DP690-11	193.62	193.62			0.78217	0.94415	NaN	1	0	Median	52124000	31257000	20868000	6997	1916	6563	13957	34264;34265;34266;34267	34265		4	9606
IPVEGEVPEAR	0	1	Unmodified	1194.6245	0.62445203	201	O60294	LCMT2	tRNA wybutosine-synthesizing protein 4	yes	yes	0	0	0	4	0				1													13.868	13.868	2	0.0018133	7002	DP690-4	99.653	81.667			0.66053	0.76931	NaN	1	0	Median	10951000	6824500	4127000	6998	201	6564	13958	34268;34269;34270;34271	34268		4	9606
IPVFDAGHER	0	1	Unmodified	1139.5724	0.57235688	2182	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	12	0												3					13.244	13.244	3	0.01126	6492	DP690-12	82.261	45.676			NaN	NaN	NaN	0	0	Median	0	0	0	6999	2182	6565	13959;13960;13961	34272;34273;34274	34273		3	9606
IPVTLNMK	1	0	Unmodified	914.52592	0.52592396	319	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	7	0							2										15.19	15.19	2	0.066716	8487	DP690-7	94.006	46.091			NaN	NaN	NaN	0	0	Median	0	0	0	7000	319	6566	13962;13963	34275;34276	34275		2	9606
IPWFQYPIIYDIR	0	1	Unmodified	1722.9134	0.91336383	1948	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	14	0														2			23.633	23.633	2	1.9495E-05	20001	DP690-14	180.66	139.26			0.76411	0.93619	11.715	2	0	Median	34714000	19382000	15332000	7001	1948	6567	13964;13965	34277;34278;34279;34280	34279		4	9606
IPYLPITNFNQNWQDGK	1	0	Unmodified	2047.0163	0.016325351	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10.3	0.471										2	1						21.168	21.168	2	1.1273E-17	18192	DP690-10	240.37	195.81			0.66829	0.82034	21.662	2	0	Median	149280000	85263000	64019000	7002	250	6568	13966;13967;13968	34281;34282;34283;34284;34285;34286	34282		6	9606
IQAAASTPTNATAASDANTGDR	0	1	Unmodified	2102.9829	0.98285297	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	9	4					1								1				12.121	12.121	2	7.9112E-43	4775	DP690-13	264.31	236.03			0.76193	0.8495	13.315	2	0	Median	118330000	65722000	52603000	7003	811	6569	13969;13970	34287;34288;34289;34290;34291;34292;34293;34294;34295	34288		9	9606
IQAGEIGEMKDGVPEGAQLQGPVHR	1	1	Oxidation (M)	2631.3075	0.30749835	507	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	1	1	13	0													1				14.163	14.163	4	0.00054085	7613	DP690-13	72.676	51.476			0.73823	0.84294	NaN	1	0	Median	85859000	46034000	39824000	7004	507	6570	13971	34296;34297	34297	640	2	9606
IQAIAWAR	0	1	Unmodified	927.52904	0.5290355	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	4.5	0.5				1	1												15.798	15.798	2	0.049889	9573	DP690-4	155.73	86.345			0.89651	0.94036	NaN	1	0	Median	134510000	71817000	62688000	7005	516	6571	13972;13973	34298;34299	34298		1	9606
IQAINEIGAGPFSQFIK	1	0	Unmodified	1831.9832	0.98323431	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	10.3	0.471										2	1						21.565	21.565	2	9.4579E-08	18936	DP690-10	170.95	126.33			0.91791	1.1326	53.036	2	0	Median	97784000	61648000	36135000	7006	1399	6572	13974;13975;13976	34300;34301;34302;34303;34304;34305	34301		6	9606
IQALLLTVLATLVK	1	0	Unmodified	1494.9749	0.97490145	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	10	0										1							27.256	27.256	2	0.024286	25513	DP690-10	96.059	84.839			NaN	NaN	NaN	0	0	Median	0	0	0	7007	550	6573	13977	34306	34306		1	9606
IQALQQQADEAEDR	0	1	Unmodified	1613.7645	0.76452734	1028	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	0	14.2	0.433														3	1		13.473	13.473	2	3.6689E-14	6666	DP690-15	224.42	151.89			0.81582	0.90836	NaN	1	0	Median	92397000	55328000	37069000	7008	1028	6574	13978;13979;13980;13981	34307;34308;34309;34310;34311;34312;34313;34314	34313		8	9606
IQAPSADLEVQAGQVDLK	1	0	Unmodified	1880.9844	0.98435652	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	9.5	0.5									1	1							17.687	17.687	2	7.8109E-06	12029	DP690-9	156.08	112.58			NaN	NaN	NaN	0	0	Median	2588300	2588300	0	7009	1602	6575	13982;13983	34315;34316	34316		2	9606
IQASTMAFK	1	0	Unmodified	995.511	0.51100218	690	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	7	0							1										13.871	13.871	2	0.053592	6947	DP690-7	66.351	44.823			0.59328	0.6493	NaN	1	0	Median	12462000	7157500	5304200	7010	690	6576	13984	34317	34317		1	9606
IQASTMAFK	1	0	Oxidation (M)	1011.5059	0.5059168	690	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	8	0								1									11.787	11.787	2	0.0099583	4383	DP690-8	95.741	60.248			0.894	0.9959	NaN	1	0	Median	15754000	8431600	7322100	7011	690	6576	13985	34318;34319;34320	34318	995	3	9606
IQAVLALSR	0	1	Unmodified	969.59712	0.59711507	1966	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	3	0			1														15.926	15.926	2	0.0089083	9847	DP690-3	90.657	21.742			1.3887	1.5766	NaN	1	0	Median	11122000	5280400	5841700	7012	1966	6577	13986	34321	34321		1	9606
IQDALSTVLQYAEDVLSGK	1	0	Unmodified	2049.063	0.063000772	80	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	5	0					2												29.374	29.374	2	5.339E-05	25004	DP690-5	140.49	91.129			NaN	NaN	NaN	0	0	Median	1858800	0	1858800	7013	80	6578	13987;13988	34322;34323;34324	34324		3	9606
IQDKEGIPPDQQR	1	1	Unmodified	1522.774	0.77396981	1009	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	1	8.04	4.74		3	4	3		1	1	1	1	2	2	1	1	1	4		10.69	10.69	2;3	2.1447E-10	2670	DP690-3	179.59	120.89			0.85964	0.96244	55.688	17	0	Median	1886299999.9999998	796160000	1090100000	7014	1009	6579	13989;13990;13991;13992;13993;13994;13995;13996;13997;13998;13999;14000;14001;14002;14003;14004;14005;14006;14007;14008;14009;14010;14011;14012;14013	34325;34326;34327;34328;34329;34330;34331;34332;34333;34334;34335;34336;34337;34338;34339;34340;34341;34342;34343;34344;34345;34346;34347;34348;34349;34350;34351;34352;34353;34354;34355;34356;34357;34358;34359;34360;34361;34362;34363;34364;34365;34366;34367;34368;34369;34370;34371;34372;34373;34374;34375;34376;34377;34378;34379;34380;34381;34382	34361		58	9606
IQDLSLLYQLFSR	0	1	Unmodified	1594.8719	0.87189295	1231	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	11	0											1						24.523	24.523	2	0.00038116	22301	DP690-11	127.52	111.14			0.68539	0.81516	NaN	1	0	Median	2626300	1185400	1440900	7015	1231	6580	14014	34383;34384;34385;34386	34384		4	9606
IQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAK	1	0	2 Oxidation (M)	3364.6894	0.68944341	862	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	2	0	16	0																1	21.278	21.278	3	1.1191E-05	16144	DP690-16	65.624	58.057			0.5191	0.60435	NaN	1	0	Median	2553100	1682200	870900	7016	862	6581	14015	34387;34388;34389;34390	34387	1306;1307	4	9606
IQEIIEQLDVTTSEYEKEK	2	0	Unmodified	2294.1529	0.15293799	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	12	0												1					18.938	18.938	3	0.0016589	14580	DP690-12	73.918	73.918			0.7453	0.86382	NaN	1	0	Median	37596000	19851000	17745000	7017	461	6582	14016	34391;34392	34392		2	9606
IQELAHELAAAK	1	0	Unmodified	1292.7089	0.70885036	251	O75381	PEX14	Peroxisomal membrane protein PEX14	yes	yes	0	0	0	13	0													1				13.767	13.767	2	0.021074	6941	DP690-13	71.03	22.607			0.74484	0.86657	NaN	1	0	Median	29485000	15535000	13949000	7018	251	6583	14017	34393	34393		1	9606
IQELEDLLAK	1	0	Unmodified	1170.6496	0.64960415	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	14	2												1				1	18.95	18.95	2	5.3247E-05	14478	DP690-12	185.72	63.542			0.77244	0.86796	1.1372	2	0	Median	316120000	178100000	138020000	7019	544	6584	14018;14019	34394;34395;34396;34397;34398;34399;34400	34395		7	9606
IQELENLPGSLAGDLR	0	1	Unmodified	1723.9105	0.9104633	835	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	10	0										1							19.994	19.994	2	0.0096393	16769	DP690-10	71.933	35.613			0.64684	0.80911	NaN	1	0	Median	35317000	20962000	14355000	7020	835	6585	14020	34401	34401		1	9606
IQELFHVEPGLQR	0	1	Unmodified	1564.8362	0.83617614	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	11	0											1						16.413	16.413	3	0.07477	11400	DP690-11	70.438	45.879			0.83978	1.0144	NaN	1	0	Median	97515000	49604000	47912000	7021	1932	6586	14021	34402	34402		0	9606
IQEQVQQTLAR	0	1	Unmodified	1312.7099	0.709913	1963	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	11	0											2						13.099	13.099	2	0.019497	6578	DP690-11	99.973	31.957			NaN	NaN	NaN	0	0	Median	0	0	0	7022	1963	6587	14022;14023	34403;34404	34404		2	9606
IQESFTSEEER	0	1	Unmodified	1353.6048	0.6048388	1727	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	13	0													1				11.9	11.9	2	0.05608	4475	DP690-13	59.908	34.334			0.77731	0.9564	NaN	1	0	Median	24517000	13943000	10574000	7023	1727	6588	14024	34405	34405		1	9606
IQETQAELPR	0	1	Unmodified	1183.6197	0.619701	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	7	4			1								1						13.004	13.004	2	9.4333E-06	6415	DP690-11	158.76	87.843			0.75026	0.84813	NaN	1	0	Median	68269000	64151000	4118200	7024	1280	6589	14025;14026	34406;34407;34408;34409	34406		4	9606
IQEVADELQK	1	0	Unmodified	1171.6085	0.60846762	524	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	16	0																1	13.579	13.579	2	0.00067415	6682	DP690-16	113.66	63.943			0.8767	1.0257	NaN	1	0	Median	18238000	8748500	9489700	7025	524	6590	14027	34410;34411	34411		2	9606
IQEVGEITNLR	0	1	Unmodified	1270.6881	0.68811492	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	0	10	0										1							15.948	15.948	2	0.00020966	10900	DP690-10	147.75	93.998			0.91532	1.1327	NaN	1	0	Median	109450000	55115000	54336000	7026	1234	6591	14028	34412;34413	34412		2	9606
IQFDEGYDNYPGQEK	1	0	Unmodified	1801.7795	0.7795087	1785	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	14	0														2			16.343	16.343	2	0.013882	10736	DP690-14	112.64	59.407			NaN	NaN	NaN	0	0	Median	0	0	0	7027	1785	6592	14029;14030	34414;34415	34414		2	9606
IQFENNEDQDVNPLK	1	0	Unmodified	1801.8483	0.84825697	306	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	3	0			1														16.675	16.675	2	0.0046762	10887	DP690-3	117.09	75.551			NaN	NaN	NaN	0	0	Median	3574100	0	3574100	7028	306	6593	14031	34416;34417	34417		2	9606
IQFKPDDGISPER	1	1	Unmodified	1500.7573	0.75725712	1875	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	1	12	0												1					14.094	14.094	3	2.3036E-05	7684	DP690-12	143.76	143.76			0.66043	0.73221	NaN	1	0	Median	201970000	127340000	74636000	7029	1875	6594	14032	34418;34419	34418		2	9606
IQFNDLQSLLCATLQNVLR	0	1	Unmodified	2245.1889	0.18888676	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	11	0											1						28.233	28.233	2	4.6873E-37	26003	DP690-11	284.91	284.91			1.06	1.2143	NaN	1	0	Median	1045400	509000	536420	7030	1300	6595	14033	34420;34421;34422	34422		3	9606
IQFVGACNPPTDPGR	0	1	Unmodified	1627.7777	0.77767498	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								15.479	15.479	2	1.4652E-05	9094	DP690-9	140.45	98.211			0.71296	0.80492	5.0668	2	0	Median	24060000	14274000	9786600	7031	1264	6596	14034;14035	34423;34424;34425;34426;34427;34428	34427		6	9606
IQGLTVEQAEAVVR	0	1	Unmodified	1511.8308	0.83075641	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								17.815	17.815	2	2.0257E-06	12160	DP690-9	189.13	138.34			0.96596	1.1606	NaN	1	0	Median	35408000	17881000	17526000	7032	1264	6597	14036	34429;34430	34430		2	9606
IQHAVQLATEPLEK	1	0	Unmodified	1575.8621	0.86205654	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			2														13.913	13.913	2;3	3.2176E-06	7202	DP690-3	184.98	118.79			0.75342	0.78407	5.4925	2	0	Median	155780000	91331000	64451000	7033	797	6598	14037;14038	34431;34432;34433;34434;34435;34436;34437;34438	34436		8	9606
IQHGSGFGIEFNATDALR	0	1	Unmodified	1931.949	0.94897407	270	O75663	TIPRL	TIP41-like protein	yes	yes	0	0	0	7	0							1										17.85	17.85	3	0.00061927	11872	DP690-7	84.436	69.514			0.75979	0.86954	NaN	1	0	Median	19716000	9819400	9896900	7034	270	6599	14039	34439;34440;34441;34442	34440		4	9606
IQHILCTGNLCTK	1	0	Unmodified	1556.7803	0.78031752	2318	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	13	3.56								1							1	1	13.485	13.485	3	0.00029233	6581	DP690-16	104.7	88.122			0.73442	0.85322	1.5875	3	0	Plateau	63064000	34706000	28358000	7035	2318	6600	14040;14041;14042	34443;34444;34445;34446;34447;34448;34449	34445		7	9606
IQIASESSGIPERPCVLTGTPESIEQAK	1	1	Unmodified	2996.5125	0.51246533	1875	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	1	12	0												1					17.244	17.244	3	1.5405E-07	12171	DP690-12	127.16	110.09			0.5515	0.67257	NaN	1	0	Median	60634000	36412000	24223000	7036	1875	6601	14043	34450;34451;34452;34453	34450		4	9606
IQIASESSGIPERPCVLTGTPESIEQAKR	1	2	Unmodified	3152.6136	0.61357635	1875	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	2	12	0												1					16.243	16.243	4	6.2885E-05	10766	DP690-12	88.571	71.355			0.58693	0.67213	NaN	1	0	Median	27953000	16422000	11531000	7037	1875	6602	14044	34454;34455	34454		2	9606
IQIEAIPLALQGR	0	1	Unmodified	1420.8402	0.84019889	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	13	0													1				20.066	20.066	2	1.6047E-10	15510	DP690-13	246.63	246.63			0.78064	0.88607	NaN	1	0	Median	260610000	145040000	115570000	7038	2090	6603	14045	34456;34457;34458;34459	34458		4	9606
IQIGQETVITVDAK	1	0	Unmodified	1513.8352	0.83517309	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							17.18	17.18	2	4.2441E-06	12657	DP690-10	181.4	181.4			0.85165	1.0511	10.827	3	0	Plateau	123420000	60541000	62875000	7039	1270	6604	14046;14047;14048	34460;34461;34462;34463;34464;34465;34466;34467;34468;34469;34470;34471;34472	34461		13	9606
IQIIGLGTQVSQRPGAQALK	1	1	Unmodified	2077.2008	0.20077208	1519	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	1	2	0		1															16.651	16.651	3	0.0035262	9727	DP690-2	66.152	66.152			0.97643	0.9612	NaN	1	0	Median	4306300	2028000	2278300	7040	1519	6605	14049	34473	34473		1	9606
IQIPRPDDPSNQIK	1	1	Unmodified	1619.8631	0.86311917	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	1	10	0										1							14.646	14.646	3	0.00014151	8920	DP690-10	107.39	62.029			0.5464	0.63917	NaN	1	0	Median	228010000	145790000	82222000	7041	1071	6606	14050	34474;34475;34476	34474		3	9606
IQLLDLPGIIEGAK	1	0	Unmodified	1478.8708	0.87083031	2436	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	14	0														1			22.918	22.918	2	5.4837E-09	19234	DP690-14	196.67	178.13			0.76562	0.92551	NaN	1	0	Median	81488000	47360000	34128000	7042	2436	6607	14051	34477;34478;34479;34480;34481;34482;34483;34484	34482		8	9606
IQLPIIQLR	0	1	Unmodified	1092.7019	0.70191449	137	O15111	CHUK	Inhibitor of nuclear factor kappa-B kinase subunit alpha	yes	yes	0	0	0	3	0			1														20.162	20.162	2	0.00070905	15354	DP690-3	139.31	139.31			0.82127	0.90479	NaN	1	0	Median	4383400	2448800	1934600	7043	137	6608	14052	34485;34486;34487;34488	34486		4	9606
IQLQIQETLQR	0	1	Unmodified	1368.7725	0.77251325	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	9.75	0.829									2	1	1						17.006	17.006	2	2.6343E-06	12324	DP690-11	200.86	174.81			0.85345	1.0066	5.0899	3	0	Median	393970000	208050000	185920000	7044	272	6609	14053;14054;14055;14056	34489;34490;34491;34492;34493;34494;34495;34496;34497;34498;34499;34500	34495		12	9606
IQLSSLIAAFQVTR	0	1	Unmodified	1545.8879	0.88787736	711	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	10	4						1								1			23.384	23.384	2	3.7494E-15	19833	DP690-14	256.96	235.96			0.88451	1.02	13.858	2	0	Median	28369000	15261000	13108000	7045	711	6610	14057;14058	34501;34502;34503;34504;34505;34506;34507	34502		7	9606
IQLVEEELDR	0	1	Unmodified	1242.6456	0.6455814	1028;398;434	P67936;CON__Q3SX28;P07951;P06753;P09493	TPM4;TPM2;TPM3;TPM1	Tropomyosin alpha-4 chain;Tropomyosin beta chain;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain	no	no	0	0	0	15	0															1		16.864	16.864	2	8.9306E-05	11147	DP690-15	214.96	128.01			0.81375	0.85248	NaN	1	0	Median	399860000	221110000	178750000	7046	1028;398;434	6611	14059	34508;34509;34510;34511	34510		4	9606
IQLVEEELDRAQER	0	2	Unmodified	1726.885	0.88497683	1028;398;434	P67936;CON__Q3SX28;P07951;P06753;P09493	TPM4;TPM2;TPM3;TPM1	Tropomyosin alpha-4 chain;Tropomyosin beta chain;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain	no	no	0	0	1	14.7	0.471														1	2		16.21	16.21	2;3	2.2778E-05	10531	DP690-14	158.52	112.22			0.85824	0.93102	11.424	3	0	Plateau	905530000	477910000	427620000	7047	1028;398;434	6612	14060;14061;14062	34512;34513;34514;34515;34516;34517;34518;34519	34513		8	9606
IQNMVSSGR	0	1	Unmodified	990.49166	0.49166372	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											1						10.92	10.92	2	0.0045934	3541	DP690-11	101.43	52.869			0.8299	0.98596	NaN	1	0	Median	126360000	66681000	59678000	7048	1504	6613	14063	34520;34521;34522	34522		3	9606
IQNSSGTDYPDIHAAAK	1	0	Unmodified	1786.8486	0.84859132	823	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	2	0		1															12.666	12.666	3	0.00013025	4958	DP690-2	87.088	72.091			1.0207	1.0251	NaN	1	0	Median	6493200	3732600	2760600	7049	823	6614	14064	34523;34524;34525;34526;34527	34524		5	9606
IQNTGDYYDLYGGEK	1	0	Unmodified	1734.7737	0.77369504	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	4	0				1													16.572	16.572	2	1.6772E-05	10615	DP690-4	142.89	108.2			0.88519	0.95725	NaN	1	0	Median	29160000	15253000	13907000	7050	1120	6615	14065	34528;34529;34530;34531	34530		4	9606
IQPGSQQADFLDALIVSMDVIQHETIGK	1	0	Unmodified	3052.5539	0.55393621	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	11	0											1						26.605	26.605	3	3.0994E-05	24638	DP690-11	90.712	80.634			0.73473	0.89481	NaN	1	0	Median	6349800	3555300	2794500	7051	480	6616	14066	34532;34533;34534;34535;34536;34537;34538;34539;34540;34541	34534		10	9606
IQPGSQQADFLDALIVSMDVIQHETIGK	1	0	Oxidation (M)	3068.5489	0.54885083	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	1	0	3	0			1														23.951	23.951	3	0.0018068	19659	DP690-3	56.774	45.687			2.2766	2.3801	NaN	1	0	Median	3250600	901070	2349500	7052	480	6616	14067	34542	34542	595	1	9606
IQPQMDMVEK	1	0	Oxidation (M)	1233.5733	0.57334444	2152	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	1	0	6	0						2											11.873	11.873	2	0.013207	4540	DP690-6	107.69	65.406			0.79191	0.86553	NaN	1	0	Median	64160000	33777000	30383000	7053	2152	6617	14068;14069	34543;34544;34545;34546	34546	2636	4	9606
IQPQMDMVEK	1	0	2 Oxidation (M)	1249.5683	0.56825906	2152	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	2	0	6	0						1											11.894	11.894	2	0.06907	4385	DP690-6	64.841	38.398			0.71106	0.81303	NaN	1	0	Median	15049000	9536700	5512000	7054	2152	6617	14070	34547	34547	2636	1	9606
IQPQMDMVEK	1	0	Unmodified	1217.5784	0.57842982	2152	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	0	6	0						1											14.286	14.286	2	0.00010329	7312	DP690-6	143.37	103.32			0.75829	0.84398	NaN	1	0	Median	35790000	18602000	17188000	7055	2152	6617	14071	34548;34549;34550	34549		3	9606
IQPQMDMVEKESGDR	1	1	2 Oxidation (M)	1793.7924	0.79239835	2152	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	2	1	6	0						1											10.44	10.44	3	0.066704	2822	DP690-6	73.415	44.982			NaN	NaN	NaN	0	0	Median	4553200	4553200	0	7056	2152	6618	14072	34551	34551	2636	1	9606
IQQDADSVITVGR	0	1	Unmodified	1400.726	0.72595699	2111	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	12	0												1					14.818	14.818	2	5.1998E-05	8743	DP690-12	131.12	71.208			0.91922	1.0911	NaN	1	0	Median	52972000	27313000	25659000	7057	2111	6619	14073	34552;34553	34552		2	9606
IQQEIAVQNPLVSER	0	1	Unmodified	1722.9264	0.92644771	1856	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	6	0						1											17.111	17.111	2	2.493E-05	10646	DP690-6	159.44	134.43			0.84691	0.97046	NaN	1	0	Median	6468600	3315000	3153600	7058	1856	6620	14074	34554;34555;34556;34557	34557		4	9606
IQQGALELLR	0	1	Unmodified	1139.6663	0.66625727	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										1							17.357	17.357	2	0.00096689	12974	DP690-10	108.98	77.448			0.79659	0.97989	NaN	1	0	Median	145430000	82564000	62870000	7059	1783	6621	14075	34558;34559;34560;34561	34560		4	9606
IQQLQEILQDLQK	1	0	Unmodified	1595.8883	0.88827129	2292	Q9P0K7	RAI14	Ankycorbin	yes	yes	0	0	0	11	0											1						21.786	21.786	2	4.8149E-07	19001	DP690-11	195.83	145.63			1.1929	1.4713	NaN	1	0	Median	12574000	5058200	7515700	7060	2292	6622	14076	34562;34563;34564	34562		3	9606
IQQLTALGAAQATAK	1	0	Unmodified	1483.8358	0.83584179	1937	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	0	0	0	8	0								1									15.431	15.431	2	8.8529E-10	8572	DP690-8	204.32	130.16			0.90892	1.0311	NaN	1	0	Median	9271400	4591100	4680200	7061	1937	6623	14077	34565;34566;34567;34568	34565		4	9606
IQQNTFTR	0	1	Unmodified	1006.5196	0.51959303	549;1270;250	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	7.2	4.26		2								1	2						11.135	11.135	2	0.01066	3709	DP690-11	168.23	168.23			0.91054	0.8164	13.041	4	0	Linear	4856100000	2591100000	2265000000	7062	549;250;1270	6624	14078;14079;14080;14081;14082	34569;34570;34571;34572;34573	34570		1	9606
IQSALADIAQSQLK	1	0	Unmodified	1484.8199	0.81985737	1216	Q13503	MED21	Mediator of RNA polymerase II transcription subunit 21	yes	yes	0	0	0	16	0																1	18.106	18.106	2	0.0011918	12515	DP690-16	98.156	98.156			0.81268	0.95141	NaN	1	0	Median	6878900	3448500	3430500	7063	1216	6625	14083	34574;34575;34576	34576		3	9606
IQSALEEESVFAVTAVNASEK	1	0	Unmodified	2221.1114	0.11140753	912	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	11	0											1						20.724	20.724	2	2.044E-06	17590	DP690-11	135.69	135.69			0.61436	0.75559	NaN	1	0	Median	19403000	11398000	8004100	7064	912	6626	14084	34577	34577		1	9606
IQSATVLLNEDVSDEK	1	0	Unmodified	1759.884	0.88397377	1693	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	6	0						1											17.037	17.037	2	0.012628	10577	DP690-6	115.57	53.759			NaN	NaN	NaN	0	0	Median	0	0	0	7065	1693	6627	14085	34578	34578		1	9606
IQSATVLLNEDVSDEKTAEAAMQR	1	1	Oxidation (M)	2634.2807	0.28067448	1693	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	1	1	6	0						1											16.38	16.38	3	0.023267	9793	DP690-6	70.315	37.263			NaN	NaN	NaN	0	0	Median	4067000	4067000	0	7066	1693	6628	14086	34579;34580;34581	34579	2290	3	9606
IQSGQSSTVIENIHTIIAAAAVK	1	0	Unmodified	2350.2856	0.28562392	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2.5	0.5		1	1														21.129	21.129	3	0.00037386	14739	DP690-2	91.583	76.342			0.92731	0.95359	5.311	2	0	Median	14413000	7090900	7321700	7067	2418	6629	14087;14088	34582;34583;34584;34585	34582		4	9606
IQSPTEETEIFYHR	0	1	Unmodified	1748.837	0.836964	1494	Q6P4A7	SFXN4	Sideroflexin-4	yes	yes	0	0	0	14	0														1			16.011	16.011	3	0.00032714	10329	DP690-14	92.65	58.549			0.73438	0.88788	NaN	1	0	Median	54870000	35377000	19493000	7068	1494	6630	14089	34586;34587	34586		2	9606
IQTLPNQNQSQTQPLLK	1	0	Unmodified	1950.0534	0.053439139	1611	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	10	0										1							15.172	15.172	2	2.0034E-07	9820	DP690-10	161.25	131.23			0.56143	0.69003	NaN	1	0	Median	37523000	23624000	13899000	7069	1611	6631	14090	34588;34589;34590;34591	34588		4	9606
IQTNNNPFQVPIEEQR	0	1	Unmodified	1925.9595	0.95953875	1108	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	4	0				1													17.627	17.627	2	2.5044E-17	11931	DP690-4	218.11	171.27			0.74412	0.86587	NaN	1	0	Median	8939200	5759000	3180200	7070	1108	6632	14091	34592;34593;34594;34595	34594		4	9606
IQTQPGYANTLR	0	1	Unmodified	1360.7099	0.709913	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	10.6	3.61		1							3	1	1		1	2	1		13.493	13.493	2	9.6458E-07	6559	DP690-9	160.53	90.275			0.7516	0.78836	5.2434	8	0	Median	4225699999.9999995	2394500000	1831299999.9999998	7071	1070	6633	14092;14093;14094;14095;14096;14097;14098;14099;14100;14101	34596;34597;34598;34599;34600;34601;34602;34603;34604;34605;34606;34607;34608;34609;34610;34611;34612;34613;34614;34615;34616;34617;34618;34619;34620;34621;34622;34623;34624;34625	34625		30	9606
IQVHYYEDGNVQLVSHK	1	0	Unmodified	2028.0065	0.0064889465	864;768	P52907;P47755	CAPZA1;CAPZA2	F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2	no	no	0	0	0	11.3	3.77						1								2			14.228	14.228	3;4	1.3663E-09	7805	DP690-14	182.49	151.38			0.86747	0.96211	5.191	3	0	Median	1395600000	741000000	654640000	7072	864;768	6634	14102;14103;14104	34626;34627;34628;34629;34630;34631;34632;34633;34634	34627		9	9606
IQVHYYEDGNVQLVSHKDVQDSLTVSNEAQTAK	2	0	Unmodified	3714.8125	0.81254675	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	1	14	0														2			15.936	15.936	4;5	1.8874E-11	10209	DP690-14	131.69	120.16			0.75323	0.84108	6.1688	2	0	Median	423470000	229470000	194000000	7073	864	6635	14105;14106	34635;34636;34637;34638;34639;34640;34641;34642	34638		8	9606
IQVLSMSGK	1	0	Oxidation (M)	977.52157	0.52156686	2513	Q9Y619	SLC25A15	Mitochondrial ornithine transporter 1	yes	yes	0	1	0	15	0															1		11.998	11.998	2	0.0099279	4673	DP690-15	95.815	41.204			0.80722	0.95112	NaN	1	0	Median	31155000	17340000	13815000	7074	2513	6636	14107	34643;34644	34643	2946	2	9606
IQVRLGEHNIDVLEGNEQFINAAK	1	1	Unmodified	2706.4089	0.40892695	28	CON__P00761			yes	yes	0	0	1	7.25	4.35	1	1				1	1	1	2							1	18.355	18.355	3;4	7.2574E-28	9868	DP690-1	196.61	165.22		+	NaN	NaN	NaN	0	0	Median	228080000	228080000	0	7075	28	6637	14108;14109;14110;14111;14112;14113;14114;14115	34645;34646;34647;34648;34649;34650;34651;34652;34653;34654;34655;34656;34657;34658;34659;34660	34646		16	
IQVTPPGFQLVFLPFADDKR	1	1	Unmodified	2287.2365	0.23648888	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	12	0												1					22.929	22.929	3	4.532E-05	19406	DP690-12	110.44	75.858			0.55952	0.67992	NaN	1	0	Median	5018100	3241600	1776600	7076	479	6638	14116	34661;34662	34662		2	9606
IRCEEEDVEMSEDAYTVLTR	0	2	Oxidation (M)	2460.0785	0.078469195	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	1	1	13	0													1				17.015	17.015	3	2.4969E-05	11501	DP690-13	120.41	108.46			0.88046	1.011	NaN	1	0	Median	42153000	22538000	19615000	7077	2427	6639	14117	34663;34664;34665	34664	2865	3	9606
IRDTPEDIVLEAPASGLAFHPAR	0	2	Unmodified	2474.2918	0.29177193	2128	Q9H6Y2	WDR55	WD repeat-containing protein 55	yes	yes	0	0	1	13	0													1				18.453	18.453	4	7.2273E-05	13525	DP690-13	117.35	101.85			0.49821	0.57205	NaN	1	0	Median	154550000	94812000	59739000	7078	2128	6640	14118	34666;34667;34668;34669	34669		4	9606
IREDLPNLESSEETEQINK	1	1	Unmodified	2243.0917	0.091734718	1916	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	1	11	0											1						15.631	15.631	3	1.2944E-11	10313	DP690-11	165.17	134.48			0.78702	0.93004	NaN	1	0	Median	85818000	45859000	39959000	7079	1916	6641	14119	34670	34670		1	9606
IREEFPDR	0	2	Unmodified	1060.5302	0.53015772	370;2010	P04350;Q9BUF5	TUBB4A;TUBB6	Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	1	7.67	3.77					2								1				11.293	11.293	3	0.0055045	3757	DP690-5	120.15	64.479			NaN	NaN	NaN	0	0	Median	1713700	0	1713700	7080	370;2010	6642	14120;14121;14122	34671;34672;34673;34674	34672		4	9606
IRELESQISELQEDLESER	0	2	Unmodified	2302.1288	0.12884851	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		1															20.07	20.07	3	5.5037E-12	13597	DP690-2	173.21	145.16			1.1465	1.1451	NaN	1	0	Median	22410000	10316000	12094000	7081	668	6643	14123	34675;34676;34677;34678;34679	34676		5	9606
IRELTAVVQK	1	1	Unmodified	1155.6976	0.69755739	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	15	0															2		12.301	12.301	2;3	1.188E-05	5077	DP690-15	148.91	93.83			0.87098	0.98243	3.0165	2	0	Median	203270000	106400000	96878000	7082	569	6644	14124;14125	34680;34681;34682;34683;34684;34685;34686;34687	34683		8	9606
IRETTDFKVDTK	2	1	Unmodified	1451.762	0.76200815	250	O75369	FLNB	Filamin-B	yes	yes	0	0	2	9	0									1								11.315	11.315	3	0.027349	3774	DP690-9	58.754	38.327			0.7746	0.8288	NaN	1	0	Median	4519800	2474000	2045900	7083	250	6645	14126	34688;34689	34689		2	9606
IRGETLGLIGFGR	0	2	Unmodified	1387.7936	0.79358304	908	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	1	13	0													1				17.465	17.465	3	0.00049959	12087	DP690-13	100.22	64.7			0.8873	1.0188	NaN	1	0	Median	271200000	146310000	124900000	7084	908	6646	14127	34690;34691;34692	34691		3	9606
IRIDSLSAQLSQLQK	1	1	Unmodified	1698.9628	0.96283322	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	11.7	0.471											1	2					18.198	18.198	2;3	1.0899E-14	13443	DP690-12	214.65	186.57			0.68969	0.72797	15.198	3	0	Plateau	578480000	334900000	243580000	7085	359	6647	14128;14129;14130	34693;34694;34695;34696;34697;34698;34699;34700;34701	34698		9	9606
IRLENEIQTYR	0	2	Unmodified	1433.7627	0.76267685	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	6.45	4.7	1	2	1	2				1	2				1			1	14.505	14.505	2;3	0.00013365	7105	DP690-2	158.08	83.915		+	NaN	NaN	NaN	0	0	Median	233790000	233790000	0	7086	42	6648	14131;14132;14133;14134;14135;14136;14137;14138;14139;14140;14141	34702;34703;34704;34705;34706;34707;34708;34709;34710;34711;34712;34713;34714;34715;34716;34717;34718;34719;34720;34721	34709		20	9606
IRLESEEEGVPSTAIR	0	2	Unmodified	1784.9268	0.92684164	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	11.3	3.77						1								2			14.582	14.582	2;3	7.7486E-09	8314	DP690-14	238.03	203.33			0.82874	0.97391	7.8065	3	0	Median	421660000	225940000	195720000	7087	391	6649	14142;14143;14144	34722;34723;34724;34725;34726;34727;34728;34729;34730	34726		9	9606
IRPFAVAAVLR	0	2	Unmodified	1211.7503	0.75026167	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	1	8.57	3.11				2					2	1		2					16.805	16.805	2;3	7.0361E-05	11378	DP690-12	117.02	84.608			0.86053	0.9739	22.354	7	0	Median	2030099999.9999998	1094700000	935410000	7088	2210	6650	14145;14146;14147;14148;14149;14150;14151	34731;34732;34733;34734;34735;34736;34737;34738;34739;34740;34741;34742;34743;34744;34745;34746;34747;34748;34749;34750;34751;34752;34753;34754	34732		24	9606
ISALNIVGDLLR	0	1	Unmodified	1282.7609	0.76088593	2256	Q9NXR1;Q9GZM8	NDE1;NDEL1	Nuclear distribution protein nudE homolog 1;Nuclear distribution protein nudE-like 1	yes	no	0	0	0	14	0														1			23.656	23.656	2	0.00049423	20152	DP690-14	112.13	81.565			0.64887	0.81258	NaN	1	0	Median	5799800	3477400	2322400	7089	2256	6651	14152	34755;34756	34755		2	9606
ISANENSLAVR	0	1	Unmodified	1172.6149	0.61494998	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	11	0											2						13.172	13.172	2	0.00024787	6699	DP690-11	179.51	109.91			NaN	NaN	NaN	0	0	Median	0	0	0	7090	2340	6652	14153;14154	34757;34758	34758		2	9606
ISAPNVDFNLEGPK	1	0	Unmodified	1499.762	0.76200815	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								18.159	18.159	2	0.014226	12569	DP690-9	107.09	74.759			NaN	NaN	NaN	0	0	Median	0	0	0	7091	1145	6653	14155	34759	34759		1	9606
ISASCQHPTAFEEAIPK	1	0	Unmodified	1884.904	0.90399771	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	5	0					1												14.848	14.848	3	0.0019572	7960	DP690-5	73.833	49.723			0.75581	0.75045	NaN	1	0	Median	264070000	149960000	114110000	7092	2385	6654	14156	34760;34761;34762;34763;34764;34765;34766	34766		7	9606
ISASGPESLLGGPGGASAAPAAGSK	1	0	Unmodified	2109.0702	0.070211415	2448	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	11	0											1						16.919	16.919	2	7.5036E-05	12233	DP690-11	107.63	58.271			NaN	NaN	NaN	0	0	Median	8599100	8599100	0	7093	2448	6655	14157	34767	34767		1	9606
ISAWHNNVEK	1	0	Unmodified	1196.5938	0.5938206	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	11.3	0.471											2	1					10.838	10.838	2;3	0.025968	3407	DP690-11	72.243	44.035			3.7723	4.3183	76.431	3	0	Median	383750000	87553000	296200000	7094	1269	6656	14158;14159;14160	34768;34769;34770;34771;34772;34773	34771		6	9606
ISCMSKPPAPNPTPPR	1	1	Oxidation (M)	1764.8651	0.86510978	755	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	1	1	6	0						1											10.781	10.781	3	0.00011743	3252	DP690-6	110.84	87.987			0.46456	0.52063	NaN	1	0	Median	7455500	4682900	2772700	7095	755	6657	14161	34774;34775;34776;34777	34777	1118	4	9606
ISDEDWDIIHR	0	1	Unmodified	1397.6575	0.65754307	838	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	11	0											1						16.713	16.713	3	0.043474	12006	DP690-11	60.691	26.8			NaN	NaN	NaN	0	0	Median	14001000	14001000	0	7096	838	6658	14162	34778	34778		1	9606
ISDEGIAYLVK	1	0	Unmodified	1206.6496	0.64960415	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	10	4						1								1			17.94	17.94	2	0.00011943	12909	DP690-14	168.26	112.8			1.0413	1.2442	NaN	1	0	Median	127670000	61217000	66458000	7097	662	6659	14163;14164	34779;34780;34781	34779		3	9606
ISDFGLATVFR	0	1	Unmodified	1224.6503	0.65027285	112	O14757	CHEK1	Serine/threonine-protein kinase Chk1	yes	yes	0	0	0	12.5	0.5												1	1				20.746	20.746	2	0.00038205	16396	DP690-13	117.31	68.215			0.73276	0.88231	5.6111	2	0	Median	25004000	14547000	10457000	7098	112	6660	14165;14166	34782;34783;34784	34783		3	9606
ISDVIEDSVVEDYNSVDK	1	0	Unmodified	2024.9426	0.94261087	1541	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	10	0										1							19.455	19.455	2	0.00056558	15922	DP690-10	146.96	121.84			NaN	NaN	NaN	0	0	Median	0	0	0	7099	1541	6661	14167	34785	34785		1	9606
ISEACSLAQQSGDHR	0	1	Unmodified	1657.7478	0.74783142	867	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	11	0											1						11.698	11.698	3	0.03351	4525	DP690-11	83.856	58.125			0.86808	1.0491	NaN	1	0	Median	100910000	58804000	42102000	7100	867	6662	14168	34786	34786		0	9606
ISELDAFLKEPALNEANLSNLK	2	0	Unmodified	2428.285	0.28495522	1124	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	1	7	0							1										20.908	20.908	3	1.3491E-29	15674	DP690-7	220.16	220.16			0.69031	0.73805	NaN	1	0	Median	42981000	24859000	18121000	7101	1124	6663	14169	34787;34788;34789	34788		3	9606
ISENSYSLDDLEIGPGQLSSSTFDSEKNESR	1	1	Unmodified	3403.5539	0.55393203	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	11	0											1						19.66	19.66	3	2.8313E-05	16193	DP690-11	86.577	70.375			NaN	NaN	NaN	0	0	Median	10499000	10499000	0	7102	2340	6664	14170	34790;34791	34791		2	9606
ISEQFTAMFR	0	1	Oxidation (M)	1244.586	0.58595803	1034;406;2017;370;1217	P07437;P68371;Q9BVA1;Q13885;Q13509;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	1	0	7.83	3.67					3	1							2				17.168	17.168	2	0.00015569	13792	DP690-13	148.69	125.91			1.0701	1.1516	10.017	5	0	Median	3492599999.9999995	1698699999.9999998	1793899999.9999998	7103	406;1034;2017;1217;370	6665	14171;14172;14173;14174;14175;14176	34792;34793;34794;34795;34796;34797;34798;34799;34800;34801;34802;34803;34804;34805;34806;34807;34808;34809;34810	34796	389	19	9606
ISEQFTAMFR	0	1	Unmodified	1228.591	0.59104341	1034;406;2017;370;1217	P07437;P68371;Q9BVA1;Q13885;Q13509;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	0	0	9	4					1								1				18.705	18.705	2	2.8861E-05	13730	DP690-13	180.03	105.73			1.0113	1.0592	6.2966	2	0	Median	1234000000	619350000	614610000	7104	406;1034;2017;1217;370	6665	14177;14178	34811;34812;34813;34814;34815;34816;34817;34818;34819	34811		9	9606
ISETTMLQSGMK	1	0	2 Oxidation (M)	1356.6265	0.62650222	895	P55196	MLLT4	Afadin	yes	yes	0	2	0	10	0										1							11.33	11.33	2	0.0079699	4173	DP690-10	84.198	68.234			0.7277	0.8857	NaN	1	0	Median	19789000	9972200	9817000	7105	895	6666	14179	34820	34820	1375;1376	1	9606
ISFDLAEYTADVDGVGTLR	0	1	Unmodified	2041.0004	0.0004005156	210	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	6	0						1											22.295	22.295	2	0.023733	16641	DP690-6	88.552	39.604			NaN	NaN	NaN	0	0	Median	509320	0	509320	7106	210	6667	14180	34821	34821		1	9606
ISFLENNLEQLTK	1	0	Unmodified	1547.8195	0.81952302	648	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	3	0			1														20.393	20.393	2	1.6826E-11	15653	DP690-3	188.28	132.26			NaN	NaN	NaN	0	0	Median	6359100	6359100	0	7107	648	6668	14181	34822;34823	34822		2	9606
ISFPPEYPFKPPMIK	2	0	Oxidation (M)	1805.9426	0.94261505	120	O14933	UBE2L6	Ubiquitin/ISG15-conjugating enzyme E2 L6	yes	yes	0	1	1	8	0								1									18.459	18.459	3	0.05085	12370	DP690-8	58.268	58.268			0.48532	0.57436	NaN	1	0	Median	2799900	1776900	1023000	7108	120	6669	14182	34824	34824		0	9606
ISGAIGPCVSLNSK	1	0	Unmodified	1401.7286	0.72859953	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	9	3.46			1								3						15.422	15.422	2	7.8553E-05	10023	DP690-11	146.5	111.7			1.0568	1.2618	NaN	1	0	Median	102190000	51321000	50872000	7109	1332	6670	14183;14184;14185;14186	34825;34826;34827;34828	34825		4	9606
ISGALFTNDKFQVSTNK	2	0	Unmodified	1868.9632	0.96322715	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							16.265	16.265	3	9.4339E-08	11395	DP690-10	155.26	127.04			0.77292	0.90366	NaN	1	0	Median	188830000	99562000	89271000	7110	13	6671	14187	34829;34830;34831	34830		3	9606
ISGETIFVTAPHEATAGIIGVNR	0	1	Unmodified	2352.2438	0.24375911	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	6.5	4.03		1	1							1	1						18.718	18.718	3	1.5126E-15	14862	DP690-10	169.62	149.24			0.63171	1.1183	25.998	4	0	Linear	330520000	188990000	141530000	7111	1075	6672	14188;14189;14190;14191	34832;34833;34834;34835;34836;34837;34838;34839;34840;34841;34842	34834		11	9606
ISGLIYEETR	0	1	Unmodified	1179.6136	0.61355299	990	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	14.7	2.98								1								5	18.205	18.205	2	3.5561E-05	8839	DP690-8	193.1	140.32			1.0267	0.99125	4.1743	4	0	Linear	3598899999.9999995	1765599999.9999998	1833299999.9999998	7112	990	6673	14192;14193;14194;14195;14196;14197	34843;34844;34845;34846;34847;34848;34849;34850;34851;34852;34853;34854;34855;34856;34857	34855		15	9606
ISGLIYEETRGVLK	1	1	Unmodified	1576.8825	0.88245763	990	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	16	0																1	17.11	17.11	3	1.3483E-05	11253	DP690-16	132.14	132.14			1.1627	1.3105	NaN	1	0	Median	17523000	9121900	8401500	7113	990	6674	14198	34858;34859	34858		2	9606
ISGNFLMEFQVK	1	0	Oxidation (M)	1427.7119	0.71188683	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	1	0	12	0												1					19.885	19.885	2	0.00013774	15769	DP690-12	125.68	77.259			0.78994	0.9495	NaN	1	0	Median	22335000	12641000	9693900	7114	2240	6675	14199	34860;34861;34862;34863	34860	2709	4	9606
ISHVVVEDTVVSDK	1	0	Unmodified	1525.7988	0.79878758	1551	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	10	0										1							13.372	13.372	3	0.0013397	7168	DP690-10	85.287	60.351			0.94816	1.1708	NaN	1	0	Median	149910000	76975000	72937000	7115	1551	6676	14200	34864;34865	34864		2	9606
ISIEMHGTLEDQLSHLR	0	1	Oxidation (M)	1993.9891	0.98912432	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	1	0	7	4			1								1						16.734	16.734	4	3.9243E-05	10924	DP690-3	118.47	79.857			1.2851	1.4573	37.81	2	0	Median	201600000	95636000	105970000	7116	476	6677	14201;14202	34866;34867;34868;34869;34870	34869	580	5	9606
ISIPDVDLDLKGPK	2	0	Unmodified	1508.845	0.84500949	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	10	0										1							18.331	18.331	3	0.0021151	14246	DP690-10	95.428	79.609			0.51755	0.65368	NaN	1	0	Median	68748000	38768000	29980000	7117	1145	6678	14203	34871;34872;34873	34871		3	9606
ISIPDVGLHLK	1	0	Unmodified	1190.7023	0.70230842	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							17.84	17.84	3	0.00069967	13442	DP690-10	97.597	73.087			1.0869	1.3635	32.954	2	0	Median	148640000	60975000	87662000	7118	1145	6679	14204;14205	34874;34875;34876;34877;34878;34879	34875		6	9606
ISISTSGGSFR	0	1	Unmodified	1110.5669	0.56693715	43	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	4.33	2.87	1			1				1									14.766	14.766	2	2.0577E-06	6418	DP690-1	160.82	92.035		+	NaN	NaN	NaN	0	0	Median	42962000	42962000	0	7119	43	6680	14206;14207;14208	34880;34881;34882;34883;34884	34880		5	9606
ISITLVSVPLIVR	0	1	Unmodified	1408.9017	0.90173651	1890	Q96KR6	FAM210B	Protein FAM210B	yes	yes	0	0	0	16	0																1	22.232	22.232	2	0.00011302	17123	DP690-16	123.11	123.11			0.67477	0.79312	NaN	1	0	Median	3758600	2340500	1418200	7120	1890	6681	14209	34885;34886	34886		2	9606
ISLEQMAETFGK	1	0	Oxidation (M)	1368.6595	0.65951691	2532				yes	yes	0	1	0	2	0		1															13.033	13.033	3	0.03928	5432	DP690-2	72.29	38.026	+		NaN	NaN	NaN	0	0	Median	1402700	0	1402700	7121	2532	6682	14210	34887	34887	2964	1	9606
ISLGLPVGAVINCADNTGAK	1	0	Unmodified	1969.0303	0.030260856	992	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	12	4								1								1	20.319	20.319	2	2.2198E-17	14983	DP690-16	198.81	174.54			1.0453	1.1674	38.507	2	0	Median	142970000	77705000	65266000	7122	992	6683	14211;14212	34888;34889;34890;34891;34892;34893	34891		6	9606
ISLIQIFR	0	1	Unmodified	988.60695	0.60695147	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										2							21.186	21.186	2	0.0037721	18498	DP690-10	128.48	35.792			0.78816	0.9776	NaN	1	0	Median	97663000	54006000	43657000	7123	1492	6684	14213;14214	34894;34895	34894		1	9606
ISLPLPNFSSLNLR	0	1	Unmodified	1569.8879	0.88787736	424	P08670	VIM	Vimentin	yes	yes	0	0	0	12.1	3.52				1								1	3	1		1	22.681	22.681	2	3.7237E-09	17394	DP690-16	202.03	202.03			0.73139	0.79395	5.6287	6	0	Linear	829080000	474630000	354450000	7124	424	6685	14215;14216;14217;14218;14219;14220;14221	34896;34897;34898;34899;34900;34901;34902;34903;34904;34905;34906;34907;34908;34909;34910;34911;34912;34913;34914;34915;34916;34917;34918;34919;34920;34921;34922;34923;34924;34925	34920		30	9606
ISLPVILMDETLK	1	0	Unmodified	1470.8368	0.83675299	506	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	11	0											1						23.007	23.007	2	0.0039956	20552	DP690-11	123.62	69.079			NaN	NaN	NaN	0	0	Median	5721800	5721800	0	7125	506	6686	14222	34926	34926		1	9606
ISLQAIQQLVR	0	1	Unmodified	1267.7612	0.76122028	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	9.17	2.91			1						1	2	1	1					20.497	20.497	2	1.771E-06	15736	DP690-3	221.94	181.87			0.8349	0.96571	2.4763	5	0	Median	885130000	481750000	403390000	7126	272	6687	14223;14224;14225;14226;14227;14228	34927;34928;34929;34930;34931;34932;34933;34934;34935;34936;34937;34938;34939;34940;34941;34942;34943;34944;34945;34946;34947	34943		21	9606
ISLSTLQQQLGQPEK	1	0	Unmodified	1668.9046	0.90464964	2504	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	11	0											1						18.562	18.562	2	0.00051602	14615	DP690-11	140.45	70.59			NaN	NaN	NaN	0	0	Median	17889000	17889000	0	7127	2504	6688	14229	34948	34948		1	9606
ISLWSLYPR	0	1	Unmodified	1133.6233	0.62332982	2047	Q9BYB4	GNB1L	Guanine nucleotide-binding protein subunit beta-like protein 1	yes	yes	0	0	0	14	0														1			20.798	20.798	2	0.069561	16626	DP690-14	115.49	77.191			1.2218	1.5294	NaN	1	0	Median	6065700	4227800	1837900	7128	2047	6689	14230	34949	34949		0	9606
ISMAAYVSGELEHVTR	0	1	Unmodified	1761.872	0.8719693	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	11	0											1						19.62	19.62	3	0.020196	16085	DP690-11	54.811	40.835			0.82558	1.0075	NaN	1	0	Median	17672000	9615400	8056600	7129	518	6690	14231	34950	34950		1	9606
ISMPDFDLHLK	1	0	Oxidation (M)	1330.6591	0.65912298	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	1	0	9.5	0.5									1	1							16.536	16.536	3	0.0021825	10541	DP690-9	87.713	70.085			0.80184	0.95814	15.172	2	0	Median	208100000	113340000	94755000	7130	1145	6691	14232;14233	34951;34952;34953;34954;34955;34956;34957	34955	1777	7	9606
ISMPDFDLHLK	1	0	Unmodified	1314.6642	0.66420836	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	9	0									1								18.914	18.914	3	0.0030667	13467	DP690-9	67.214	35.493			0.69504	0.87457	NaN	1	0	Median	19810000	11959000	7850700	7131	1145	6691	14234	34958;34959;34960	34960		3	9606
ISMPDIDLNLTGPK	1	0	Unmodified	1512.7858	0.78578005	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								20.428	20.428	2	0.0028345	15405	DP690-9	88.803	59.846			0.72534	0.90643	NaN	1	0	Median	5185000	2989400	2195500	7132	1145	6692	14235	34961;34962	34961		2	9606
ISMPDLDLHLK	1	0	Unmodified	1280.6799	0.67985842	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							18.48	18.48	3	0.0096888	13000	DP690-9	69.672	44.604			0.74434	0.93474	19.381	2	0	Median	81797000	45742000	36055000	7133	1145	6693	14236;14237	34963;34964;34965	34965		3	9606
ISMPDLDLNLK	1	0	Unmodified	1257.6639	0.663874	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								19.967	19.967	2	0.01009	14793	DP690-9	109.44	0			NaN	NaN	NaN	0	0	Median	0	0	0	7134	1145	6694	14238	34966	34966		1	9606
ISMPDLDLNLKGPK	2	0	Unmodified	1539.8331	0.8330646	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9.5	0.5									1	1							18.112	18.112	3	2.1342E-05	12502	DP690-9	137.62	0			0.67975	0.81201	0.76056	2	0	Median	143300000	87924000	55381000	7135	1145	6695	14239;14240	34967;34968;34969;34970	34968		4	9606
ISMPDVDFNLK	1	0	Unmodified	1277.6326	0.63257388	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								19.637	19.637	2	0.041199	14465	DP690-9	65.157	65.157			0.86666	1.0841	NaN	1	0	Median	5346200	2821800	2524500	7136	1145	6696	14241	34971	34971		1	9606
ISMPDVDLHLK	1	0	Oxidation (M)	1282.6591	0.65912298	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	1	0	8	3.03		1							2	2							15.915	15.915	3	0.0044915	9309	DP690-10	76.927	46.535			0.73541	0.94064	14.428	5	0	Median	818950000	457560000	361390000	7137	1145	6697	14242;14243;14244;14245;14246	34972;34973;34974;34975;34976;34977;34978;34979;34980;34981;34982;34983	34976	1778	12	9606
ISMPDVDLHLK	1	0	Unmodified	1266.6642	0.66420836	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	10.2	0.829									1	1	2						17.494	17.494	3	0.00073284	13027	DP690-10	96.756	66.616			0.77206	0.8919	10.264	4	0	Median	721230000	393800000	327420000	7138	1145	6697	14247;14248;14249;14250	34984;34985;34986;34987;34988;34989;34990;34991;34992;34993;34994;34995	34987		12	9606
ISMPDVDLHLKGPK	2	0	Unmodified	1548.8334	0.83339895	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	10	0										1							16.03	16.03	3	2.7014E-05	11020	DP690-10	141.58	117.63			0.66908	0.77887	NaN	1	0	Median	199860000	121040000	78820000	7139	1145	6698	14251	34996;34997	34996		2	9606
ISMPDVDLHLKGPK	2	0	Oxidation (M)	1564.8283	0.82831357	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	1	1	9	0									1								13.747	13.747	3	7.6751E-05	6748	DP690-9	116.98	101.34			0.59362	0.68513	NaN	1	0	Median	50732000	34913000	15820000	7140	1145	6698	14252	34998;34999;35000;35001	35001	1779	4	9606
ISMPDVGLNLK	1	0	Oxidation (M)	1201.6377	0.63765925	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9	0									1								16.082	16.082	2	0.007584	9860	DP690-9	89.029	53.734			0.74761	0.93573	NaN	1	0	Median	21416000	11584000	9831600	7141	1145	6699	14253	35002	35002	1780	1	9606
ISMPDVNLNLK	1	0	Unmodified	1242.6642	0.66420836	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								18.745	18.745	2	0.055528	13343	DP690-9	60.102	34.543			0.51592	0.64771	NaN	1	0	Median	5823100	3349500	2473600	7142	1145	6700	14254	35003	35003		1	9606
ISMPEIDLNLK	1	0	Oxidation (M)	1287.6744	0.67443869	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9	0									1								17.519	17.519	2	0.017215	11777	DP690-9	97.965	40.416			NaN	NaN	NaN	0	0	Median	7545200	7545200	0	7143	1145	6701	14255	35004;35005	35005	1781	2	9606
ISMPGFKGEGPDVDVNLPK	2	0	Oxidation (M)	2015.0034	0.0033774035	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	1	9	0									1								16.041	16.041	3	0.032302	9944	DP690-9	47.732	32.459			0.72436	0.84975	NaN	1	0	Median	27082000	16501000	10580000	7144	1145	6702	14256	35006	35006	1782	1	9606
ISMPGFKGEGPEVDVNLPK	2	0	Oxidation (M)	2029.019	0.019027468	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	1	1	9	0									1								16.088	16.088	3	0.012503	9942	DP690-9	55.907	28.758			0.61683	0.72006	NaN	1	0	Median	32715000	21355000	11359000	7145	1145	6703	14257	35007;35008;35009	35007	1783	3	9606
ISMQDVDLSLGSPK	1	0	Unmodified	1488.7494	0.74939455	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.75	0.433									1	3							18.816	18.816	2	6.2601E-09	15030	DP690-10	205.07	116.25			0.72404	0.9229	NaN	1	0	Median	54272000	5023400	49248000	7146	1145	6704	14258;14259;14260;14261	35010;35011;35012;35013	35011		4	9606
ISMQDVDLSLGSPK	1	0	Oxidation (M)	1504.7443	0.74430917	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9	0									1								16.199	16.199	2	0.00013181	10105	DP690-9	155.47	125.33			0.71465	0.90275	NaN	1	0	Median	18710000	11006000	7703300	7147	1145	6704	14262	35014;35015;35016;35017	35017	1784	4	9606
ISMSEVDLNVAAPK	1	0	Oxidation (M)	1488.7494	0.74939455	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	10	0										1							15.585	15.585	2	0.0014545	10335	DP690-10	102.53	60.195			0.70459	0.86984	NaN	1	0	Median	120970000	67663000	53303000	7148	1145	6705	14263	35018;35019	35018	1785	2	9606
ISNAQLQTELVEILK	1	0	Unmodified	1697.9564	0.95635086	1805	Q93034	CUL5	Cullin-5	yes	yes	0	0	0	3	0			1														22.295	22.295	2	0.00017815	17896	DP690-3	118.76	89.801			0.86499	0.90383	NaN	1	0	Median	3066800	1668300	1398500	7149	1805	6706	14264	35020;35021;35022;35023	35022		4	9606
ISNLIVLHLR	0	1	Unmodified	1176.7343	0.73427725	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	11	0											1						17.151	17.151	3	0.023899	12504	DP690-11	75.387	25.354			NaN	NaN	NaN	0	0	Median	0	0	0	7150	1280	6707	14265	35024	35024		1	9606
ISNLLSDYGYHLR	0	1	Unmodified	1549.7889	0.7888916	630	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	3	0			1														17.608	17.608	3	0.00084909	12137	DP690-3	91.202	63.526			2.0866	2.3677	NaN	1	0	Median	10943000	4145600	6797300	7151	630	6708	14266	35025	35025		1	9606
ISNQVDLSNVCAQYR	0	1	Unmodified	1765.8417	0.8417318	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10	0.816									1	1	1						16.368	16.368	2	1.6039E-39	11445	DP690-10	336.34	294.65			0.81197	0.92788	3.4652	2	0	Median	677190000	354770000	322420000	7152	272	6709	14267;14268;14269	35026;35027;35028;35029;35030;35031;35032;35033;35034	35027		9	9606
ISNTAISISDHTALAQFCK	1	0	Unmodified	2076.031	0.030989138	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														17.229	17.229	3	5.7209E-05	11630	DP690-3	146.76	132.03			1.1043	1.1713	NaN	1	0	Median	32234000	14621000	17613000	7153	559	6710	14270	35035;35036	35035		2	9606
ISPFEHQTYCQR	0	1	Unmodified	1564.7093	0.70926107	610;600	P27361;P28482	MAPK3;MAPK1	Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 1	no	no	0	0	0	6	0						2											12.867	12.867	2;3	4.2544E-05	5517	DP690-6	174.77	144.59			0.81602	0.90222	0.13581	2	0	Median	91157000	52183000	38974000	7154	600;610	6711	14271;14272	35037;35038;35039;35040;35041;35042;35043;35044	35044		8	9606
ISPIQKPQGLDPVEILQER	1	1	Unmodified	2159.195	0.195018	834	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	1	10	0										1							18.825	18.825	3	0.00772	15079	DP690-10	100.97	76.372			NaN	NaN	NaN	0	0	Median	47992000	47992000	0	7155	834	6712	14273	35045;35046	35045		2	9606
ISPLQFR	0	1	Unmodified	859.49159	0.49158736	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														16.012	16.012	2	0.040443	10028	DP690-3	111.69	19.221			NaN	NaN	NaN	0	0	Median	15680000	15680000	0	7156	878	6713	14274	35047;35048	35047		2	9606
ISPTFADAYSNMGNTLK	1	0	Oxidation (M)	1844.8615	0.86146419	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	1	0	3	0			1														16.581	16.581	2	0.068043	10761	DP690-3	83.087	46.767			NaN	NaN	NaN	0	0	Median	0	0	0	7157	149	6714	14275	35049	35049		1	9606
ISQMPVILTPLHFDRDPLQK	1	1	Oxidation (M)	2363.2671	0.26713708	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	1	1	3.67	0.471			1	2													18.019	18.019	3;4	4.2463E-12	12393	DP690-4	162.81	162.81			0.6536	0.74544	11.99	3	0	Median	96058000	59645000	36414000	7158	813	6715	14276;14277;14278	35050;35051;35052;35053;35054;35055;35056;35057;35058;35059	35056	1223	10	9606
ISQQALSAYAQAEK	1	0	Unmodified	1506.7678	0.7678218	1637	Q8N0Z6	TTC5	Tetratricopeptide repeat protein 5	yes	yes	0	0	0	13	0													1				15.142	15.142	2	0.00059233	9090	DP690-13	106.49	62.289			1.2233	1.4237	NaN	1	0	Median	26690000	9056900	17633000	7159	1637	6716	14279	35060	35060		1	9606
ISQSNYIPTQQDVLR	0	1	Unmodified	1760.9057	0.90571227	426	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	14	0														1			16.635	16.635	2	1.9233E-15	11133	DP690-14	250.26	250.26			0.7864	0.92572	NaN	1	0	Median	140520000	76935000	63589000	7160	426	6717	14280	35061;35062;35063;35064	35062		4	9606
ISSIQSIVPALEIANAHR	0	1	Unmodified	1918.0636	0.063609895	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	8	4				1								1					19.599	19.599	3	2.3456E-10	14229	DP690-4	156.72	156.72			0.85802	0.98129	26.08	2	0	Median	150270000	84198000	66068000	7161	461	6718	14281;14282	35065;35066;35067;35068;35069;35070	35068		6	9606
ISSLLEEQFQQGK	1	0	Unmodified	1505.7726	0.77257283	967	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	13.3	3.09									1						1	1	17.134	17.134	2	1.7092E-17	11542	DP690-15	303.26	201.29			0.98802	1.0618	NaN	1	0	Median	301410000	156060000	145350000	7162	967	6719	14283;14284;14285	35071;35072;35073;35074;35075;35076;35077	35073		7	9606
ISSLMHVPPSLFTEPNEISQYLPIK	1	0	Oxidation (M)	2855.4779	0.47791772	270	O75663	TIPRL	TIP41-like protein	yes	yes	0	1	0	7	0							1										21.715	21.715	3	0.00056441	16650	DP690-7	73.11	58.772			0.61931	0.6734	NaN	1	0	Median	8684100	5143500	3540500	7163	270	6720	14286	35078;35079;35080;35081	35081	279	4	9606
ISSLSAATKALAER	1	1	Unmodified	1416.7936	0.79364262	2557				yes	yes	0	0	1	9.5	0.5									1	1							13.938	13.938	3	0.0023011	7889	DP690-10	85.973	57.741	+		0.96183	1.0263	NaN	1	0	Median	905750000	445040000	460700000	7164	2557	6721	14287;14288	35082;35083;35084	35082		3	9606
ISSMVVMENVGQQK	1	0	Oxidation (M)	1564.7589	0.75891338	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	1	0	9	3.56				1							1	1					14.334	14.334	2	4.8016E-09	7945	DP690-11	204.56	162.22			0.90317	1.0925	NaN	1	0	Median	93663000	62908000	30755000	7165	751	6722	14289;14290;14291	35085;35086;35087;35088;35089;35090;35091	35087	1109;1110	7	9606
ISSMVVMENVGQQK	1	0	2 Oxidation (M)	1580.7538	0.753828	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	2	0	9	3.08				1					1		1	1					12.711	12.711	2	6.0381E-26	6040	DP690-11	224.75	182.42			0.91558	1.0709	21.047	3	0	Plateau	155330000	97019000	58312000	7166	751	6722	14292;14293;14294;14295	35092;35093;35094;35095;35096;35097;35098;35099;35100;35101;35102;35103;35104	35092	1109;1110	13	9606
ISSMVVMENVGQQK	1	0	Unmodified	1548.764	0.76399875	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	11	0											1						16.218	16.218	2	0.0031468	11166	DP690-11	129.82	73.186			NaN	NaN	NaN	0	0	Median	0	0	0	7167	751	6722	14296	35105	35105		1	9606
ISSSKGSLGGGFSSGGFSGGSFSR	1	1	Unmodified	2209.04	0.039973919	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	4	0				1													15.718	15.718	3	0.014772	9587	DP690-4	74.274	53.565		+	NaN	NaN	NaN	0	0	Median	8365200	8365200	0	7168	42	6723	14297	35106	35106		1	9606
ISSTLYQAAAPVLTPAK	1	0	Unmodified	1729.9614	0.96143623	1663	Q8N6L1	KRTCAP2	Keratinocyte-associated protein 2	yes	yes	0	0	0	16	0																2	18.001	18.001	2	0.00059968	12295	DP690-16	101.39	76.535			0.87178	1.0155	NaN	1	0	Median	3582600	2293300	1289300	7169	1663	6724	14298;14299	35107;35108	35107		2	9606
ISTETEETEGSLHCCK	1	0	Unmodified	1879.7928	0.79279228	2486	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	3	0			1														11.547	11.547	3	0.0036641	4109	DP690-3	99.069	70.489			NaN	NaN	NaN	0	0	Median	4748400	0	4748400	7170	2486	6725	14300	35109;35110	35109		2	9606
ISTEVGITNVDLSTVDKDQSIAPK	2	0	Unmodified	2529.3174	0.31737756	376	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	1	12	0												1					17.78	17.78	3	8.3566E-05	12852	DP690-12	118.46	118.46			0.66992	0.77588	NaN	1	0	Median	38804000	20610000	18194000	7171	376	6726	14301	35111	35111		1	9606
ISTINILLSTLK	1	0	Unmodified	1314.8123	0.8122528	199	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	10	0										1							22.58	22.58	2	0.00051343	20228	DP690-10	111.5	78.746			0.85244	1.0347	NaN	1	0	Median	15894000	9304800	6589600	7172	199	6727	14302	35112;35113;35114	35113		3	9606
ISTLPQLNSALVQDLAK	1	0	Unmodified	1810.02	0.020013746	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	0	13	0													1				21.326	21.326	2	5.1021E-05	17142	DP690-13	187.74	132.39			NaN	NaN	NaN	0	0	Median	66749000	66749000	0	7173	491	6728	14303	35115	35115		1	9606
ISTPQTNTVPIKPLISTPPVSSQPK	2	0	Unmodified	2629.4691	0.46906759	1996	Q9BTA9	WAC	WW domain-containing adapter protein with coiled-coil	yes	yes	0	0	1	11.5	0.5											1	1					16.705	16.705	3	0.0025079	11921	DP690-11	58.054	58.054			NaN	NaN	NaN	0	0	Median	39172000	26092000	13080000	7174	1996	6729	14304;14305	35116;35117;35118	35116		3	9606
ISTYGLPAGGIQPHPQTK	1	0	Unmodified	1863.9843	0.98429694	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	11	0											1						14.719	14.719	3	0.043157	8966	DP690-11	43.532	23.639			0.62373	0.69728	NaN	1	0	Median	240100000	150660000	89434000	7175	2501	6730	14306	35119;35120	35119		2	9606
ISVMGGEQAANVLATITK	1	0	Oxidation (M)	1817.9557	0.95569893	2167	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	4	0				1													19.776	19.776	2	0.0021677	14508	DP690-4	110.44	72.825			NaN	NaN	NaN	0	0	Median	1805300	1805300	0	7176	2167	6731	14307	35121	35121	2654	1	9606
ISVNDFIIK	1	0	Unmodified	1047.5964	0.59644637	457	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	12	0												3					19.637	19.637	2	0.027705	15421	DP690-12	117.81	49.44			NaN	NaN	NaN	0	0	Median	18678000	18678000	0	7177	457	6732	14308;14309;14310	35122;35123;35124	35124		3	9606
ISVYYNEASSHK	1	0	Unmodified	1396.6623	0.6622941	1217	Q13509	TUBB3	Tubulin beta-3 chain	yes	yes	0	0	0	9	4					1								1				12.218	12.218	3	0.0018448	4691	DP690-5	84.605	64.762			1.0575	1.1241	13.571	2	0	Median	181200000	87094000	94105000	7178	1217	6733	14311;14312	35125;35126;35127;35128;35129;35130	35129		6	9606
ISVYYNEATGGK	1	0	Unmodified	1300.6299	0.62993134	406	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	8.9	4.78			1	1	2	1		1					1	1	1	1	14.29	14.29	2	2.9694E-10	7044	DP690-5	242.39	177.97			1.1005	1.15	13.985	8	0	Median	9881000000	4803900000	5077000000	7179	406	6734	14313;14314;14315;14316;14317;14318;14319;14320;14321;14322	35131;35132;35133;35134;35135;35136;35137;35138;35139;35140;35141;35142;35143;35144;35145;35146;35147;35148;35149;35150;35151;35152;35153;35154;35155;35156;35157;35158;35159;35160;35161;35162	35151		32	9606
ISYIPDEEVSSPSPPQR	0	1	Unmodified	1899.9214	0.92142191	2523	Q9Y6M1	IGF2BP2	Insulin-like growth factor 2 mRNA-binding protein 2	yes	yes	0	0	0	12	0												1					16.384	16.384	2	0.00011732	10964	DP690-12	120.59	97.868			0.66304	0.79432	NaN	1	0	Median	24124000	14915000	9208600	7180	2523	6735	14323	35163;35164;35165	35164		3	9606
ISYLLSVFK	1	0	Unmodified	1068.6219	0.62193284	1281	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	9	0									1								20.592	20.592	2	0.014357	15553	DP690-9	85.161	46.385			0.6566	0.78815	NaN	1	0	Median	2014800	1300900	713920	7181	1281	6736	14324	35166	35166		1	9606
ITAEEALLHPFFK	1	0	Unmodified	1514.8133	0.81331543	81	O00311	CDC7	Cell division cycle 7-related protein kinase	yes	yes	0	0	0	12	0												1					19.995	19.995	3	8.0783E-05	15830	DP690-12	119.74	80.349			0.53614	0.65085	NaN	1	0	Median	8968100	5520600	3447600	7182	81	6737	14325	35167	35167		1	9606
ITAEEMYDIFGK	1	0	Oxidation (M)	1431.6592	0.65918256	2462	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	1	0	16	0																1	18.095	18.095	2	0.00010226	12388	DP690-16	136.52	72.475			0.90955	1.049	NaN	1	0	Median	31257000	16353000	14904000	7183	2462	6738	14326	35168;35169;35170;35171;35172;35173	35171	2907	6	9606
ITAFVVER	0	1	Unmodified	933.52837	0.5283668	800	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1													15.221	15.221	2	0.067724	8849	DP690-4	107.9	47.136			0.98713	1.1138	NaN	1	0	Median	28697000	14725000	13972000	7184	800	6739	14327	35174	35174		0	9606
ITALEDISTEDGDR	0	1	Unmodified	1533.7158	0.71584581	171	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	3	0			1														16.385	16.385	2	0.051927	10500	DP690-3	101.47	54.862			NaN	NaN	NaN	0	0	Median	0	0	0	7185	171	6740	14328	35175	35175		1	9606
ITAMDTEDQGVK	1	0	Oxidation (M)	1322.6024	0.60239596	2129	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	1	0	4	0				1													10.828	10.828	2	0.00011051	3286	DP690-4	129.85	114.71			0.73734	0.79108	NaN	1	0	Median	4612100	2239100	2373000	7186	2129	6741	14329	35176;35177;35178;35179	35177	2626	4	9606
ITAQENDMEVELPAAANSR	0	1	Oxidation (M)	2073.9637	0.96369743	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	1	0	13	2											2				2		15.09	15.09	2	6.4016E-23	9441	DP690-11	227.91	201.8			0.88189	1.0606	NaN	1	0	Median	111360000	59098000	52257000	7187	1950	6742	14330;14331;14332;14333	35180;35181;35182;35183;35184;35185;35186;35187	35180	2483	8	9606
ITAQENDMEVELPAAANSR	0	1	Unmodified	2057.9688	0.96878281	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11	0											3						16.944	16.944	2	0	12126	DP690-11	458.57	347.08			NaN	NaN	NaN	0	0	Median	56499000	32435000	24064000	7188	1950	6742	14334;14335;14336	35188;35189;35190;35191;35192;35193	35192		6	9606
ITAQQITTPGAQQK	1	0	Unmodified	1483.7995	0.79945628	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	9.5	0.5									1	1							13.111	13.111	2	4.2869E-05	5934	DP690-9	134.75	109.91			0.71181	0.88444	1.6282	2	0	Median	42529000	23559000	18970000	7189	1891	6743	14337;14338	35194;35195;35196;35197;35198;35199;35200;35201;35202	35200		9	9606
ITAQSIEELCAVNLYGPDAQVDR	0	1	Unmodified	2561.2432	0.24316676	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							20.705	20.705	2	6.7167E-73	17687	DP690-10	349.2	303.48			0.82114	1.0172	7.8303	2	0	Median	112090000	60128000	51961000	7190	1046	6744	14339;14340	35203;35204;35205;35206;35207;35208;35209;35210;35211	35204		9	9606
ITDLANLSAANHDAAIFPGGFGAAK	1	0	Unmodified	2441.2339	0.2339227	0	P0DPI2;A0A0B4J2D5			yes	no	0	0	0	7	0							1										19.268	19.268	3	2.8532E-07	13724	DP690-7	140.51	116.11			0.78302	0.85428	NaN	1	0	Median	15808000	8785400	7022700	7191	0	6745	14341	35212	35212		1	9606
ITDQEASENHVAATGSHLCVLR	0	1	Unmodified	2407.155	0.15502045	1943	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	11	0											1						13.817	13.817	4	0.00033999	7659	DP690-11	85.61	62.957			1.0145	1.2216	NaN	1	0	Median	106200000	55903000	50302000	7192	1943	6746	14342	35213	35213		1	9606
ITDSAGHILYSK	1	0	Unmodified	1303.6772	0.67721588	802	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	0	0	0	16	0																1	12.748	12.748	3	0.0030031	5621	DP690-16	75.89	38.908			0.97266	1.1387	NaN	1	0	Median	14807000	7796400	7010800	7193	802	6747	14343	35214;35215	35214		2	9606
ITEGDVVVGIASSGLHSNGFSLVR	0	1	Unmodified	2413.2601	0.26013745	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														20.697	20.697	3	9.2618E-46	15939	DP690-3	238.72	222.75			0.93799	1.0488	NaN	1	0	Median	36430000	20322000	16108000	7194	559	6748	14344	35216;35217;35218;35219;35220	35217		5	9606
ITELMQVLK	1	0	Unmodified	1073.6155	0.61546725	606	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	12	0												1					18.286	18.286	2	3.1013E-10	13547	DP690-12	183.9	114.72			NaN	NaN	NaN	0	0	Median	16910000	16910000	0	7195	606	6749	14345	35221;35222	35221		2	9606
ITELTDENVK	1	0	Unmodified	1160.5925	0.5924832	536	P19387	POLR2C	DNA-directed RNA polymerase II subunit RPB3	yes	yes	0	0	0	6	0						1											13.134	13.134	2	0.00018734	5814	DP690-6	129.42	78.362			2.5519	2.8823	NaN	1	0	Median	5387700	1682600	3705200	7196	536	6750	14346	35223;35224	35224		2	9606
ITENYDCGTK	1	0	Unmodified	1199.5129	0.51285267	2225	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	3	0			1														10.793	10.793	2	0.063014	3211	DP690-3	59.931	33.547			0.85169	0.89703	NaN	1	0	Median	7833000	3997500	3835500	7197	2225	6751	14347	35225	35225		1	9606
ITESDLSQLTASIR	0	1	Unmodified	1532.8046	0.80460124	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	2	0		1															19.718	19.718	2	7.7058E-07	13246	DP690-2	238.92	204.83			1.172	1.2239	NaN	1	0	Median	13898000	6167200	7730700	7198	1270	6752	14348	35226;35227	35226		2	9606
ITESEEVVSR	0	1	Unmodified	1147.5721	0.57208211	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.5	0.5											1	1					11.995	11.995	2	2.6799E-05	4680	DP690-12	196.99	110.2			0.80743	0.88323	1.7728	2	0	Median	731160000	391600000	339560000	7199	359	6753	14349;14350	35228;35229;35230;35231;35232;35233;35234;35235;35236;35237;35238	35236		11	9606
ITFDAFPGEPDKELNPK	2	0	Unmodified	1916.952	0.95199376	1168	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	1	14	0														1			17.543	17.543	3	0.019257	12370	DP690-14	87.99	60.857			NaN	NaN	NaN	0	0	Median	55579000	55579000	0	7200	1168	6754	14351	35239;35240	35239		2	9606
ITFHGEGDQEPGLEPGDIIIVLDQK	1	0	Unmodified	2719.3705	0.37047576	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	5	0					1												21.186	21.186	3	9.2194E-05	15847	DP690-5	110.53	95.476			0.98004	0.98084	NaN	1	0	Median	14708000	7041000	7667300	7201	636	6755	14352	35241;35242	35241		2	9606
ITFLLQAIR	0	1	Unmodified	1073.6597	0.65971533	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3.5	0.5			1	1													20.211	20.211	2	0.00011143	15340	DP690-3	186.67	140.66			0.9768	1.1002	4.321	2	0	Median	58281000	28114000	30167000	7202	82	6756	14353;14354	35243;35244;35245;35246;35247;35248;35249;35250	35244		8	9606
ITFPSSQQEAQNR	0	1	Unmodified	1504.727	0.72701962	1744	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	11	0											2						13.811	13.811	2	0.00033706	7573	DP690-11	144.77	96.167			NaN	NaN	NaN	0	0	Median	12076000	12076000	0	7203	1744	6757	14355;14356	35251;35252;35253	35251		3	9606
ITGEAFVQFASQELAEK	1	0	Unmodified	1866.9363	0.9363437	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	10.3	4.46					1	1	1						1		1	1	21.989	21.989	2	8.407E-49	17866	DP690-13	337.25	287.31			0.83802	0.92775	7.5587	5	0	Median	753930000	388120000	365810000	7204	856	6758	14357;14358;14359;14360;14361;14362	35254;35255;35256;35257;35258;35259;35260;35261;35262;35263;35264;35265;35266;35267;35268;35269;35270;35271;35272;35273;35274	35255		21	9606
ITGEIMHALK	1	0	Oxidation (M)	1127.6009	0.60087982	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	1	0	13	0													1				11.664	11.664	3	0.031615	4186	DP690-13	57.532	41.394			0.81328	0.91712	NaN	1	0	Median	6204700	3859600	2345100	7205	2194	6759	14363	35275;35276;35277;35278	35275	2677	4	9606
ITGMLLEIDNSELLHMLESPESLR	0	1	2 Oxidation (M)	2771.3721	0.37213202	471	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	2	0	12	0												1					21.736	21.736	3	0.010043	18039	DP690-12	51.645	39.679			1.0284	1.2571	NaN	1	0	Median	5600000	2409600	3190400	7206	471	6760	14364	35279	35279	570;571	1	9606
ITGVFSMR	0	1	Acetyl (Protein N-term);Oxidation (M)	967.4797	0.47970205	2183	Q9NPH0	ACP6	Lysophosphatidic acid phosphatase type 6	yes	yes	1	1	0	9	0									1								15.659	15.659	2	0.060884	9581	DP690-9	55.441	31.469			0.78442	0.93922	NaN	1	0	Median	37586000	20573000	17013000	7207	2183	6761	14365	35280	35280		0	9606
ITHCPTLLTR	0	1	Unmodified	1210.6492	0.64922699	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							12.296	12.296	3	0.0090102	5628	DP690-10	72.096	52.853			0.90483	1.0933	NaN	1	0	Median	183470000	95971000	87495000	7208	13	6762	14366	35281;35282;35283;35284	35282		4	9606
ITHEVDELTQIIADVSQDPTLPR	0	1	Unmodified	2589.3286	0.32861095	684	P36954	POLR2I	DNA-directed RNA polymerase II subunit RPB9	yes	yes	0	0	0	16	0																1	23.152	23.152	3	0.0008416	18134	DP690-16	72.99	55.486			0.68714	0.80462	NaN	1	0	Median	2511500	1613100	898390	7209	684	6763	14367	35285;35286;35287;35288	35287		4	9606
ITHQIVDRPGQQTSVIGR	0	2	Unmodified	2004.0865	0.086470602	94	O00541	PES1	Pescadillo homolog	yes	yes	0	0	1	12	0												1					12.075	12.075	4	0.00064001	4877	DP690-12	82.121	66.178			0.71951	0.81582	NaN	1	0	Median	164220000	98673000	65543000	7210	94	6764	14368	35289;35290	35289		2	9606
ITHSPLTICFPEYTGANKYDEAASYIQSK	2	0	Unmodified	3303.5758	0.57579386	377	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	1	14	0														1			18.609	18.609	4	0.008261	13881	DP690-14	41.986	31.329			0.81759	0.91531	NaN	1	0	Median	71020000	37023000	33997000	7211	377	6765	14369	35291	35291		1	9606
ITIGQAPTEK	1	0	Unmodified	1056.5815	0.58152458	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7	4			1								1						12.783	12.783	2	0.00019719	6104	DP690-11	154.85	105.49			0.99463	1.0572	NaN	1	0	Median	139070000	16176000	122900000	7212	470	6766	14370;14371	35292;35293;35294;35295	35292		4	9606
ITIGQGNTEK	1	0	Unmodified	1059.556	0.55603812	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											1						11.002	11.002	2	0.00011858	3544	DP690-11	140.83	74.484			0.93557	1.1254	NaN	1	0	Median	92791000	45189000	47602000	7213	1504	6767	14372	35296	35296		1	9606
ITITNDQNR	0	1	Unmodified	1073.5465	0.54653606	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	7	4			1								1						10.98	10.98	2	8.079E-05	3343	DP690-3	174.16	111.5			1.1374	1.3309	39.512	2	0	Median	136980000	73572000	63409000	7214	462	6768	14373;14374	35297;35298;35299;35300;35301	35301		5	9606
ITKPGSIDSNNQLFAPGGR	1	1	Unmodified	1971.0174	0.017387984	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	10	0										2							14.725	14.725	3	0.0038802	9134	DP690-10	102.03	18.204			NaN	NaN	NaN	0	0	Median	224430000	128940000	95494000	7215	1111	6769	14375;14376	35302;35303;35304;35305	35302		4	9606
ITLAEALLHPFFAGLTPEER	0	1	Unmodified	2224.1892	0.18920434	805	P49761	CLK3	Dual specificity protein kinase CLK3	yes	yes	0	0	0	12	0												1					24.562	24.562	3	1.2269E-06	21145	DP690-12	127.97	107.88			0.75716	0.93013	NaN	1	0	Median	2986200	1578500	1407700	7216	805	6770	14377	35306;35307;35308;35309	35306		4	9606
ITLDNAYMEK	1	0	Oxidation (M)	1212.5696	0.56963927	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	1	0	4	0				1													14.188	14.188	2	0.00026231	7425	DP690-4	134.26	105.56			0.98879	1.0233	NaN	1	0	Median	216220000	106860000	109360000	7217	488	6771	14378	35310;35311;35312;35313	35312	610	4	9606
ITLDNAYMEK	1	0	Unmodified	1196.5747	0.57472465	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	4	0				1													15.669	15.669	2	0.00041944	9450	DP690-4	120.99	58.442			1.0303	1.0999	NaN	1	0	Median	52475000	24956000	27519000	7218	488	6771	14379	35314;35315;35316;35317	35315		4	9606
ITLEHLGICCHEYCFK	1	0	Unmodified	2078.9376	0.9376228	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	0	11	0											1						16.462	16.462	4	6.0586E-05	11549	DP690-11	115.68	107.29			0.71775	0.81388	NaN	1	0	Median	199610000	111250000	88367000	7219	144	6772	14380	35318;35319;35320;35321;35322	35318		5	9606
ITLFLEEDK	1	0	Unmodified	1106.5859	0.58594126	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10	0										1							18.451	18.451	2	0.00075691	14540	DP690-10	135.83	79.109			0.87154	1.0559	NaN	1	0	Median	193070000	98012000	95063000	7220	2190	6773	14381	35323;35324;35325	35324		3	9606
ITLFLEEDKSLK	2	0	Unmodified	1434.797	0.79699667	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	10	0										1							17.2	17.2	3	0.0016674	12712	DP690-10	87.831	73.587			0.80158	0.97916	NaN	1	0	Median	106420000	51019000	55397000	7221	2190	6774	14382	35326;35327	35326		2	9606
ITLQDVVSHSK	1	0	Unmodified	1225.6667	0.6666512	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	2	0		2															15.562	15.562	2;3	3.4593E-05	8355	DP690-2	113.22	113.22			1.304	1.3063	14.51	2	0	Median	16337000	6756800	9580200	7222	766	6775	14383;14384	35328;35329;35330;35331;35332;35333	35330		6	9606
ITLVASALR	0	1	Unmodified	942.58622	0.58621603	1584	Q86X51	CXorf67	Uncharacterized protein CXorf67	yes	yes	0	0	0	8	4				1								1					16.291	16.291	2	0.00056018	10848	DP690-12	148.04	50.57			0.87839	1.0154	13.713	2	0	Median	140050000	75761000	64290000	7223	1584	6776	14385;14386	35334;35335;35336;35337;35338;35339;35340;35341;35342	35336		9	9606
ITMELFSNIVPR	0	1	Unmodified	1418.7592	0.75917137	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	10	0										1							21.43	21.43	2	0.045206	18695	DP690-10	87.568	24.352			NaN	NaN	NaN	0	0	Median	6717900	0	6717900	7224	808	6777	14387	35343	35343		1	9606
ITMSAPGMILLPVIMER	0	1	Unmodified	1871.0083	0.0082685468	1902	Q96NB2	SFXN2	Sideroflexin-2	yes	yes	0	0	0	14	0														1			24.029	24.029	2	0.021616	20572	DP690-14	61.03	40.923			0.52903	0.6668	NaN	1	0	Median	3020400	1981300	1039100	7225	1902	6778	14388	35344	35344		1	9606
ITNDAREDEMEENLTQVGSILGNLK	1	1	Oxidation (M)	2804.3498	0.34981667	66	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	1	1	15	0															2		20.033	20.033	3	1.4722E-12	15236	DP690-15	156.2	117.82			NaN	NaN	NaN	0	0	Median	3607500	0	3607500	7226	66	6779	14389;14390	35345;35346;35347	35345	76	3	9606
ITNQVIYLNPPIEECR	0	1	Unmodified	1957.9931	0.99314707	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								18.453	18.453	2	6.6088E-07	12856	DP690-9	147.26	114.2			0.83337	0.94142	11.292	2	0	Median	14598000	7167000	7430500	7227	1264	6780	14391;14392	35348;35349;35350;35351;35352;35353;35354;35355	35354		8	9606
ITPAHDQNDYEVGQR	0	1	Unmodified	1741.802	0.80197548	597	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	8.33	3.77			1								2						11.195	11.195	3	0.0064066	4055	DP690-11	94.45	63.914			1.0557	1.195	NaN	1	0	Median	10181000	5223000	4957900	7228	597	6781	14393;14394;14395	35356;35357;35358	35356		3	9606
ITPENLPQILLQLK	1	0	Unmodified	1618.9658	0.96579333	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											1						23.091	23.091	2	0.00024532	20622	DP690-11	114.89	114.89			0.66262	0.80333	NaN	1	0	Median	83847000	50048000	33799000	7229	735	6782	14396	35359;35360	35359		2	9606
ITPSYVAFTPEGER	0	1	Unmodified	1565.7726	0.77257283	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	7.5	4.03			1	1							1	1					17.025	17.025	2	3.4367E-05	11101	DP690-4	172.61	142.04			1.0792	1.1904	40.359	4	0	Median	405510000	192360000	213150000	7230	462	6783	14397;14398;14399;14400	35361;35362;35363;35364;35365;35366;35367;35368;35369;35370;35371;35372;35373;35374;35375	35372		15	9606
ITPYDVQLGYSVLSR	0	1	Unmodified	1709.8988	0.89883598	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								20.382	20.382	2	0.0017814	15319	DP690-9	90.697	70.493			0.93155	1.1654	NaN	1	0	Median	9188600	4972600	4216000	7231	2217	6784	14401	35376;35377;35378	35377		3	9606
ITQDIFQQLLK	1	0	Unmodified	1345.7606	0.76055158	905	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	5	3.46			3								1						21.144	21.144	2	0.00011909	16468	DP690-3	155.42	94.94			NaN	NaN	NaN	0	0	Median	25106000	25106000	0	7232	905	6785	14402;14403;14404;14405	35379;35380;35381;35382;35383	35380		5	9606
ITQSNAILR	0	1	Unmodified	1014.5822	0.58219329	546	P21266;P46439;P28161	GSTM3;GSTM5;GSTM2	Glutathione S-transferase Mu 3;Glutathione S-transferase Mu 5;Glutathione S-transferase Mu 2	yes	no	0	0	0	7	0							1										12.41	12.41	2	0.001342	5156	DP690-7	122.18	29.709			0.83854	0.94362	NaN	1	0	Median	31115000	15584000	15531000	7233	546	6786	14406	35384;35385	35385		2	9606
ITSAYLQDIENAYKK	2	0	Unmodified	1755.9043	0.90431529	314	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	1	14	0														1			17.92	17.92	3	2.0912E-06	12828	DP690-14	188.13	162.77			0.8962	1.0002	NaN	1	0	Median	188990000	94624000	94367000	7234	314	6787	14407	35386;35387	35387		2	9606
ITSCIFQLLQEAGIK	1	0	Unmodified	1719.9229	0.92294224	560	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	5	0					1												23.823	23.823	2	0.00020652	18970	DP690-5	147.58	101.22			NaN	NaN	NaN	0	0	Median	2080400	2080400	0	7235	560	6788	14408	35388;35389	35389		2	9606
ITSEAEDLVANFFPK	1	0	Unmodified	1679.8407	0.8406524	948	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	7	0							1										22.974	22.974	2	0.00013711	18104	DP690-7	120.86	91.515			1.0076	1.0909	NaN	1	0	Median	6867700	3416700	3450900	7236	948	6789	14409	35390;35391;35392;35393	35393		4	9606
ITSEALLVTQQLVK	1	0	Unmodified	1541.9029	0.90285872	1576	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	3	0			2														19.487	19.487	2	0.020186	14459	DP690-3	100.55	56.244			NaN	NaN	NaN	0	0	Median	0	0	0	7237	1576	6790	14410;14411	35394;35395	35394		2	9606
ITSEMGSASQANIR	0	1	Oxidation (M)	1479.6988	0.69875596	2122	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	1	0	10	0										1							10.897	10.897	2	0.0062409	3602	DP690-10	85.813	63.82			0.73698	0.92251	NaN	1	0	Median	38418000	22936000	15482000	7238	2122	6791	14412	35396;35397;35398	35396	2621	3	9606
ITSENPDEGFKPSSGTVQELNFR	1	1	Unmodified	2551.2191	0.2190605	1179	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	0	1	2	0		1															16.688	16.688	3	3.1607E-15	9705	DP690-2	162.39	140.71			0.91312	0.89888	NaN	1	0	Median	9385000	4919600	4465400	7239	1179	6792	14413	35399;35400;35401;35402	35399		4	9606
ITSFPESEGYSYETSTK	1	0	Unmodified	1924.8578	0.8578186	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	9.33	0.471									2	1							16.056	16.056	2	1.3765E-12	11039	DP690-10	202.61	152.12			1.1366	1.4122	1.9078	2	0	Median	72261000	29196000	43065000	7240	763	6793	14414;14415;14416	35403;35404;35405;35406;35407;35408;35409;35410	35404		8	9606
ITSFVIPEPSPTSQTIQEGSR	0	1	Unmodified	2273.1539	0.15394104	717	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	12	0												2					18.413	18.413	2	6.765899999999999E-19	13778	DP690-12	183.06	121.83			0.65377	0.78999	NaN	1	0	Median	16099000	9466600	6632800	7241	717	6794	14417;14418	35411;35412;35413;35414	35411		4	9606
ITSVSTGNLCTEEQTPPPRPEAYPIPTQTYTR	0	2	Unmodified	3603.7515	0.7515264	895	P55196	MLLT4	Afadin	yes	yes	0	0	1	10	0										1							16.747	16.747	3	8.0608E-13	12117	DP690-10	129.47	112.86			NaN	NaN	NaN	0	0	Median	18554000	18554000	0	7242	895	6795	14419	35415	35415		1	9606
ITTSLLPINNGSK	1	0	Unmodified	1356.7613	0.76127986	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	4	0				1													16.715	16.715	2	0.0023062	10750	DP690-4	91.701	75.563			0.60431	0.65369	NaN	1	0	Median	8266600	5354500	2912100	7243	1227	6796	14420	35416	35416		1	9606
ITVAALDASNLLASVPSPQR	0	1	Unmodified	2022.111	0.11095402	1505	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	11	0											1						21.508	21.508	2	7.8163E-05	18600	DP690-11	153.41	112.94			NaN	NaN	NaN	0	0	Median	0	0	0	7244	1505	6797	14421	35417	35417		1	9606
ITVEDSDKQLLK	2	0	Unmodified	1387.7559	0.75586013	2082	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	0	0	1	12	0												1					13.817	13.817	3	0.018464	7366	DP690-12	61.419	61.419			0.71888	0.83419	NaN	1	0	Median	35714000	20193000	15520000	7245	2082	6798	14422	35418	35418		1	9606
ITVLQLSALLK	1	0	Unmodified	1197.7697	0.76965971	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	2	0		1															22.311	22.311	2	0.03156	16076	DP690-2	68.557	68.557			1.0128	0.99544	NaN	1	0	Median	1283500	556990	726520	7246	1437	6799	14423	35419	35419		1	9606
ITVPGNFQGHSGAQCITCSYK	1	0	Unmodified	2324.0678	0.067785349	1139	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	11	0											1						15.287	15.287	3	0.0030565	9845	DP690-11	63.184	50.82			0.87351	1.0565	NaN	1	0	Median	60398000	30859000	29538000	7247	1139	6800	14424	35420	35420		1	9606
ITVTSEVPFSK	1	0	Unmodified	1206.6496	0.64960415	665	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	16	0																1	16.331	16.331	2	2.4176E-06	10295	DP690-16	214.05	153.62			0.82282	0.87011	NaN	1	0	Median	240790000	124570000	116220000	7248	665	6801	14425	35421;35422;35423;35424	35422		4	9606
ITVTSEVPFSKR	1	1	Unmodified	1362.7507	0.75071518	665	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	1	16	0																1	14.401	14.401	3	0.0084936	7756	DP690-16	68.515	30.278			0.90292	0.97132	NaN	1	0	Median	64837000	35729000	29108000	7249	665	6802	14426	35425;35426;35427;35428	35426		4	9606
ITVYEALNHPWLK	1	0	Unmodified	1582.8508	0.85076357	121	O14936	CASK	Peripheral plasma membrane protein CASK	yes	yes	0	0	0	11	0											1						19.202	19.202	3	0.0027203	15517	DP690-11	84.169	53.171			0.61737	0.74788	NaN	1	0	Median	42982000	24353000	18629000	7250	121	6803	14427	35429;35430;35431	35430		3	9606
ITWSIIR	0	1	Unmodified	887.52289	0.52288749	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	12	0												1					18.144	18.144	2	0.041241	13368	DP690-12	128.48	45.108			NaN	NaN	NaN	0	0	Median	0	0	0	7251	694	6804	14428	35432	35432		1	9606
IVADKDYSVTANSK	2	0	Unmodified	1509.7675	0.76748745	400	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	1	6	0						4											11.291	11.291	2;3	7.2463E-06	3743	DP690-6	155.66	114.99			1.525	1.5765	NaN	1	0	Median	21310000	7586500	13724000	7252	400	6805	14429;14430;14431;14432	35433;35434;35435;35436;35437;35438;35439;35440;35441;35442	35433		10	9606
IVAERPGTNSTGPAPMAPPR	0	2	Oxidation (M)	2034.0317	0.031657839	1194	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	1	1	3	0			1														11.56	11.56	3	0.036337	4077	DP690-3	44.382	35.625			0.63622	0.65816	NaN	1	0	Median	5348400	3069600	2278800	7253	1194	6806	14433	35443	35443	1846	1	9606
IVALSSSLSNAK	1	0	Unmodified	1188.6714	0.67140222	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							14.662	14.662	2	0.00016416	9061	DP690-10	144.77	86.808			0.80924	0.96111	NaN	1	0	Median	251120000	133100000	118020000	7254	269	6807	14434	35444;35445;35446	35445		3	9606
IVAPISDSPKPPPQR	1	1	Unmodified	1600.8937	0.89369102	315	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	1	7	0							1										12.622	12.622	3	0.00010015	5370	DP690-7	115.12	97.63			0.48541	0.51161	NaN	1	0	Median	19715000	13856000	5859000	7255	315	6808	14435	35447;35448;35449	35448		3	9606
IVATKPLYVALAQR	1	1	Unmodified	1541.9293	0.92934824	471	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	1	9	3.56				1							1	1					15.995	15.995	3	7.8495E-06	9781	DP690-4	130.15	110.95			0.95473	1.0901	23.41	3	0	Median	248750000	122950000	125800000	7256	471	6809	14436;14437;14438	35450;35451;35452;35453;35454;35455;35456;35457;35458;35459;35460;35461	35457		12	9606
IVDDCGGAFTMGTIGGGIFQAIK	1	0	Oxidation (M)	2343.1239	0.12390324	1945	Q99595	TIMM17A	Mitochondrial import inner membrane translocase subunit Tim17-A	yes	yes	0	1	0	16	0																1	21.156	21.156	2	0.037612	16448	DP690-16	55.213	25.858			0.85119	0.99691	NaN	1	0	Median	8590300	4602500	3987800	7257	1945	6810	14439	35462	35462	2476	1	9606
IVDDCGGAFTMGVIGGGVFQAIK	1	0	Oxidation (M)	2327.129	0.12898862	225	O60830	TIMM17B	Mitochondrial import inner membrane translocase subunit Tim17-B	yes	yes	0	1	0	16	0																1	21.307	21.307	2	2.2928999999999998E-19	16095	DP690-16	183.06	79.93			0.70532	0.82456	NaN	1	0	Median	5968300	3421300	2547000	7258	225	6811	14440	35463;35464;35465;35466;35467	35463	228	5	9606
IVDGPDPENIILILK	1	0	Unmodified	1647.9447	0.94472354	241	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	10	0										1							22.561	22.561	2	0.006966	20195	DP690-10	74.698	74.698			0.6063	0.73938	NaN	1	0	Median	23087000	14392000	8695600	7259	241	6812	14441	35468	35468		1	9606
IVDNGYGYVSNGSVYFDTAK	1	0	Unmodified	2168.0062	0.006214175	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	5	3.46			3								1						18.305	18.305	2	1.5647E-17	12980	DP690-3	203.11	178.69			0.74137	0.78373	NaN	1	0	Median	9277700	4271700	5005900	7260	797	6813	14442;14443;14444;14445	35469;35470;35471;35472;35473;35474	35471		6	9606
IVDQIRPDR	0	2	Unmodified	1110.6146	0.61455605	517;1793	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	1	11	0											1						10.921	10.921	3	0.028946	3380	DP690-11	60.59	25.145			4.8584	5.989	NaN	1	0	Median	32820000	3225700	29594000	7261	1793;517	6814	14446	35475;35476	35475		2	9606
IVEAGCVCNDAVIR	0	1	Unmodified	1574.7545	0.7544967	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	11	0											1						14.868	14.868	2	2.8369E-05	9200	DP690-11	160.91	133.58			0.78623	0.94758	NaN	1	0	Median	83558000	43726000	39832000	7262	1068	6815	14447	35477;35478;35479;35480	35480		4	9606
IVEDAPPIDLQAEAQHASGEVEEPPR	0	1	Unmodified	2796.3566	0.35661661	630	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	3	0			2														17.581	17.581	3	7.7121E-05	12146	DP690-3	106.11	91.703			1.3059	1.4895	NaN	1	0	Median	12949000	6527000	6421700	7263	630	6816	14448;14449	35481;35482;35483;35484	35482		4	9606
IVEDDASISSCNK	1	0	Unmodified	1436.6453	0.64532341	1551	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	10	0										1							12.256	12.256	2	0.00015605	5493	DP690-10	166.55	87.894			0.87968	1.0861	NaN	1	0	Median	125510000	68792000	56717000	7264	1551	6817	14450	35485;35486;35487	35486		3	9606
IVEDEPNKICEADR	1	1	Unmodified	1686.7883	0.78829925	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	3	0			2														12.159	12.159	2;3	0.00010331	4848	DP690-3	174.24	144.5			1.0686	1.1852	NaN	1	0	Median	26156000	23108000	3047900	7265	892	6818	14451;14452	35488;35489;35490;35491;35492;35493	35488		6	9606
IVEIPFNSTNK	1	0	Unmodified	1260.6714	0.67140222	379	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	11	0											1						16.401	16.401	2	0.048207	11498	DP690-11	87.298	50.597			NaN	NaN	NaN	0	0	Median	56626000	0	56626000	7266	379	6819	14453	35494	35494		1	9606
IVELPAPADFLSLSSETKPK	2	0	Unmodified	2141.162	0.16198654	1491	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	1	10	0										1							20.737	20.737	3	4.5844E-05	17604	DP690-10	127.37	93.108			NaN	NaN	NaN	0	0	Median	42223000	0	42223000	7267	1491	6820	14454	35495;35496	35495		2	9606
IVEPPENIQEK	1	0	Unmodified	1294.6769	0.67688153	10	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	6	4		1								1							13.375	13.375	2	0.0002674	7106	DP690-10	120.99	56.568			0.64668	0.71543	24.683	2	0	Median	85343000	50021000	35323000	7268	10	6821	14455;14456	35497;35498;35499;35500	35497		4	9606
IVEQDTMPPK	1	0	Oxidation (M)	1172.5747	0.57472465	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	1	0	11.5	0.5											1	1					10.565	10.565	2	0.00089503	2928	DP690-11	117.53	81.079			0.72931	0.83316	11.574	2	0	Median	329520000	200430000	129080000	7269	96	6822	14457;14458	35501;35502;35503;35504;35505;35506	35501	107	6	9606
IVEQDTMPPK	1	0	Unmodified	1156.5798	0.57981002	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	11	0											2						11.63	11.63	2	0.0072748	4453	DP690-11	87.476	55.946			0.81665	0.99474	NaN	1	0	Median	55343000	37671000	17673000	7270	96	6822	14459;14460	35507;35508;35509	35508		3	9606
IVEQENAIQTMELR	0	1	Oxidation (M)	1688.8403	0.84033482	2508	Q9Y5X2	SNX8	Sorting nexin-8	yes	yes	0	1	0	9.67	4.03				1								1	1				14.555	14.555	2	6.7731E-05	8129	DP690-13	134.18	82.015			0.85863	0.99459	8.9861	3	0	Median	52055000	25660000	26395000	7271	2508	6823	14461;14462;14463	35510;35511;35512;35513;35514;35515;35516;35517	35512	2937	8	9606
IVERDGLSEAAAQSR	0	2	Unmodified	1600.8169	0.81689726	1178	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	1	4	0				1													12.168	12.168	3	0.00047748	4889	DP690-4	85.28	75.361			0.83895	0.87904	NaN	1	0	Median	6417000	3512600	2904400	7272	1178	6824	14464	35518	35518		1	9606
IVEVLLMK	1	0	Unmodified	943.57763	0.57762518	692	P38159;O75526	RBMX;RBMXL2	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2	yes	no	0	0	0	13	0													1				18.049	18.049	2	0.053931	12842	DP690-13	95.352	56.534			NaN	NaN	NaN	0	0	Median	16542000	16542000	0	7273	692	6825	14465	35519	35519		1	9606
IVEYEKEMEK	2	0	Unmodified	1296.6272	0.62715415	282	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	1	15	0															2		12.16	12.16	2;3	0.00031615	4862	DP690-15	122.96	108.4			0.87978	1.0069	2.9609	2	0	Median	39249000	21227000	18021000	7274	282	6826	14466;14467	35520;35521;35522;35523;35524;35525	35520		6	9606
IVFNAQGDSVLGAGACGGVPIIFSR	0	1	Unmodified	2504.2846	0.28457806	1738	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	11	0											1						21.934	21.934	2	1.761E-11	19159	DP690-11	174.87	118.73			NaN	NaN	NaN	0	0	Median	0	0	0	7275	1738	6827	14468	35526	35526		1	9606
IVFNLCPLQTEDDKQLLLSTSMDR	1	1	Oxidation (M)	2851.4096	0.40958016	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	1	1	10	0										1							20.415	20.415	3	0.00038584	17360	DP690-10	78.272	78.272			0.7321	0.91682	NaN	1	0	Median	83087000	48034000	35053000	7276	1724	6828	14469	35527;35528;35529	35527	2310	3	9606
IVFVPGCSIPLTIVK	1	0	Unmodified	1641.9528	0.9527858	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	8	4				1								1					21.193	21.193	2	0.0008162	17470	DP690-12	101.35	101.35			1.1142	1.2661	51.268	2	0	Median	38531000	20681000	17850000	7277	886	6829	14470;14471	35530;35531;35532;35533;35534;35535;35536;35537;35538;35539	35534		10	9606
IVGAPMHDLLLWNNATVTTCHSK	1	0	Unmodified	2577.2832	0.28319785	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	11	0											1						18.188	18.188	4	0.019155	14036	DP690-11	44.254	44.254			1.321	1.4708	NaN	1	0	Median	253080000	95545000	157530000	7278	470	6830	14472	35540	35540		1	9606
IVGELEQMVSEDVPLDHR	0	1	Oxidation (M)	2081.0099	0.0099193444	1071	Q00341	HDLBP	Vigilin	yes	yes	0	1	0	10	0										1							17.975	17.975	3	5.8213E-10	13842	DP690-10	150.92	128.7			0.73367	0.86821	NaN	1	0	Median	240700000	135170000	105520000	7279	1071	6831	14473	35541;35542;35543;35544	35543	1672	4	9606
IVGPEENLSQAEAR	0	1	Unmodified	1511.758	0.7579854	89	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	3	0			1														14.415	14.415	2	0.00028314	7827	DP690-3	112.84	83.294			0.83489	0.95419	NaN	1	0	Median	24017000	13119000	10898000	7280	89	6832	14474	35545;35546	35545		2	9606
IVGPSGAAVPCK	1	0	Unmodified	1154.6118	0.61177885	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8.4	3.26		1							1	2	1						12.574	12.574	2	8.213E-05	5861	DP690-10	125.71	103.97			0.71434	0.75365	9.5538	5	0	Median	1985599999.9999998	1165500000	820100000	7281	549	6833	14475;14476;14477;14478;14479	35547;35548;35549;35550;35551;35552;35553;35554;35555;35556;35557;35558	35548		12	9606
IVGPSGAAVPCKVEPGLGADNSVVR	1	1	Unmodified	2448.2795	0.27949268	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	8.75	4.32		1							1	1				1			15.7	15.7	3	3.0864E-10	9434	DP690-9	146.17	127.11			0.7544	0.80608	1.7295	2	0	Median	32244000	24526000	7718300	7282	549	6834	14480;14481;14482;14483	35559;35560;35561;35562;35563;35564;35565;35566;35567	35566		9	9606
IVHAFDMEDLGDK	1	0	Oxidation (M)	1504.6868	0.68679429	2270	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	0	1	0	16	0																1	13.983	13.983	3	0.0084421	7255	DP690-16	70.563	32.118			0.72758	0.85188	NaN	1	0	Median	14055000	8180600	5874400	7283	2270	6835	14484	35568	35568	2724	1	9606
IVHSLDYYNTCEYPNEDEMPNR	0	1	Oxidation (M)	2774.1588	0.15884478	2039	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	1	0	11	0											1						15.388	15.388	3	0.013398	9950	DP690-11	77.959	63.016			NaN	NaN	NaN	0	0	Median	0	0	0	7284	2039	6836	14485	35569	35569	2566	1	9606
IVIGYQSHADTATK	1	0	Unmodified	1502.7729	0.77290718	394	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	11	4							2								2		12.3	12.3	2;3	3.1576E-14	5123	DP690-15	216.91	193.54			0.92356	1.0251	11.444	4	0	Median	392090000	202730000	189360000	7285	394	6837	14486;14487;14488;14489	35570;35571;35572;35573;35574;35575;35576;35577;35578;35579;35580;35581;35582;35583	35573		14	9606
IVILDEADSMTSAAQAALR	0	1	Unmodified	1974.0092	0.0091910629	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	14	0														1			21.961	21.961	2	1.2323E-63	18038	DP690-14	263.89	171.78			NaN	NaN	NaN	0	0	Median	10373000	10373000	0	7286	662	6838	14490	35584;35585	35585		2	9606
IVILDEADSMTSAAQAALR	0	1	Oxidation (M)	1990.0041	0.004105685	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	1	0	14	0														4			18.648	18.648	2	8.5413E-11	13863	DP690-14	188.48	147.9			NaN	NaN	NaN	0	0	Median	0	0	0	7287	662	6838	14491;14492;14493;14494	35586;35587;35588;35589	35589	932	4	9606
IVILEYQPSK	1	0	Unmodified	1188.6754	0.67542497	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10.5	0.5										1	1						16.703	16.703	2	9.1265E-05	12005	DP690-10	153.08	110.73			0.78418	0.96559	NaN	1	0	Median	184690000	91747000	92938000	7288	1329	6839	14495;14496	35590;35591;35592	35590		3	9606
IVILPDYLEIAR	0	1	Unmodified	1413.8232	0.82315184	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	4	1.73			3				1										21.608	21.608	2	4.6769E-05	17016	DP690-3	182.39	97.231			0.68751	0.76689	5.8241	2	0	Median	87024000	44707000	42316000	7289	746	6840	14497;14498;14499;14500	35593;35594;35595;35596;35597	35594		5	9606
IVKEPTSHDNKDICK	3	0	Unmodified	1782.8934	0.89343302	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	2	10	0										1							10.269	10.269	4	0.00033009	2594	DP690-10	148.52	115.79			0.74627	0.80036	NaN	1	0	Median	334030000	182960000	151060000	7290	808	6841	14501	35598;35599;35600;35601	35601		4	9606
IVKPNGEKPDEFESGISQALLELEMNSDLK	3	0	Oxidation (M)	3345.665	0.6650028	962	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	1	2	16	0																1	21.932	21.932	4	0.052756	16754	DP690-16	44.529	16.125			NaN	NaN	NaN	0	0	Median	1300700	1300700	0	7291	962	6842	14502	35602	35602		1	9606
IVLDNSVFSEHR	0	1	Unmodified	1414.7205	0.72047768	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	7.67	4.03		1								1	1						15.884	15.884	3	6.7849E-05	10762	DP690-10	132.56	109.99			0.81386	0.93227	25.388	3	0	Plateau	529770000	292450000	237320000	7292	1075	6843	14503;14504;14505	35603;35604;35605;35606;35607;35608;35609;35610;35611	35604		9	9606
IVLEDGTLHVTEGSGR	0	1	Unmodified	1681.8635	0.8635131	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	6	3.46				3								1					15.272	15.272	2;3	3.2199E-07	8939	DP690-4	143.93	143.93			0.93599	1.0596	6.1886	2	0	Median	147960000	71339000	76616000	7293	1359	6844	14506;14507;14508;14509	35612;35613;35614;35615;35616;35617;35618;35619	35617		8	9606
IVLLDSSLEYK	1	0	Unmodified	1278.7071	0.70711903	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	8	4				1								1					18.629	18.629	2	0.0002674	14054	DP690-12	120.99	79.113			1.1242	1.2756	28.272	2	0	Median	73755000	33614000	40141000	7294	791	6845	14510;14511	35620;35621;35622;35623;35624;35625;35626	35622		7	9606
IVLNGIDLK	1	0	Unmodified	983.60153	0.60153174	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	11	0											1						17.76	17.76	2	0.012061	13428	DP690-11	87.476	36.283			1.084	1.3121	NaN	1	0	Median	63568000	28888000	34680000	7295	149	6846	14512	35627;35628;35629;35630	35628		4	9606
IVLQIDNAR	0	1	Unmodified	1040.5978	0.59784335	388	P05783;CON__P05784	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	13	0													1				15.181	15.181	2	0.00035605	8952	DP690-13	157.34	96.555		+	0.80059	0.92107	NaN	1	0	Median	201500000	109900000	91596000	7296	388	6847	14513	35631;35632;35633;35634	35632		4	9606
IVLTNPVCTEVGEK	1	0	Unmodified	1557.8072	0.80724378	714	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	13	0													1				16.512	16.512	2	2.5271E-05	10831	DP690-13	129.82	96.41			0.80293	0.92771	NaN	1	0	Median	64643000	35815000	28828000	7297	714	6848	14514	35635;35636	35635		2	9606
IVLVDDRECPVR	0	2	Unmodified	1469.766	0.76604767	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	1	3	0			1														14.003	14.003	3	0.00036797	7385	DP690-3	106.29	64.908			0.78883	0.81603	NaN	1	0	Median	21106000	10711000	10395000	7298	134	6849	14515	35637	35637		1	9606
IVLVDDSIVR	0	1	Unmodified	1127.655	0.65502388	1121	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	4	0				1													17.502	17.502	2	0.00026913	11818	DP690-4	125.31	125.31			1.7263	1.9575	NaN	1	0	Median	25945000	11099000	14846000	7299	1121	6850	14516	35638;35639;35640;35641;35642	35641		5	9606
IVNHPTMLQDPDVR	0	1	Oxidation (M)	1649.8195	0.8195398	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	1	0	4	0				2													12.35	12.35	2;3	0.00021281	5011	DP690-4	107.61	74.062			0.69041	0.76141	NaN	1	0	Median	46507000	26916000	19591000	7300	1227	6851	14517;14518	35643;35644;35645;35646;35647	35644	1873	5	9606
IVNLGSSKTDLFYER	1	1	Unmodified	1740.9046	0.90464964	1536	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	1	16	0																1	16.459	16.459	3	0.0077028	10536	DP690-16	67.648	44.791			1.1313	1.2847	NaN	1	0	Median	14198000	6541900	7656300	7301	1536	6852	14519	35648	35648		1	9606
IVNQPSSLFGSK	1	0	Unmodified	1275.6823	0.68230126	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															15.694	15.694	2	7.2644E-05	8402	DP690-2	126.03	126.03			1.6278	1.6414	NaN	1	0	Median	13303000	6069900	7232600	7302	1555	6853	14520	35649;35650;35651;35652	35649		4	9606
IVNSAQTGSFK	1	0	Unmodified	1150.5982	0.59823728	284	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	0	12	4								1								1	11.345	11.345	2	0.00019093	3960	DP690-16	163.64	103.16			0.98596	1.1301	6.0973	2	0	Median	36744000	19396000	17349000	7303	284	6854	14521;14522	35653;35654;35655;35656;35657;35658;35659	35653		7	9606
IVNSSMELAQTAK	1	0	Oxidation (M)	1406.7075	0.70752973	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	1	0	9	0									1								12.228	12.228	2	0.0031088	4903	DP690-9	92.925	57.701			1.0071	1.2588	NaN	1	0	Median	5222700	2485000	2737700	7304	2483	6855	14523	35660;35661;35662;35663;35664	35663	2925	5	9606
IVPGQFLAVDPK	1	0	Unmodified	1282.7285	0.72852317	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10	0										1							18.117	18.117	2	0.015662	14049	DP690-10	63.32	43.033			0.75319	0.92961	NaN	1	0	Median	112360000	47535000	64826000	7305	1329	6856	14524	35665;35666;35667	35666		3	9606
IVQLLAGVADQTK	1	0	Unmodified	1354.782	0.78201531	274	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	12	0												1					17.834	17.834	2	2.0586E-11	12908	DP690-12	187.16	129.3			NaN	NaN	NaN	0	0	Median	42381000	42381000	0	7306	274	6857	14525	35668;35669	35669		2	9606
IVQMTEAEVR	0	1	Oxidation (M)	1190.5965	0.59652272	964	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	1	0	9.33	4.03						1	1								1		10.831	10.831	2	0.00031882	3365	DP690-6	128.6	89.826			2.2698	2.5596	153.52	2	0	Median	53897000	10535000	43361000	7307	964	6858	14526;14527;14528	35670;35671;35672;35673;35674;35675;35676	35675	1481	7	9606
IVQQIAILMGCAILPHLR	0	1	Oxidation (M)	2061.1591	0.15910696	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	1	0	10	0										1							20.095	20.095	3	0.062019	16956	DP690-10	40.724	40.724			1.0337	1.2884	NaN	1	0	Median	24012000	13381000	10631000	7308	263	6859	14529	35677	35677		1	9606
IVQTYHVNMAGTNPYTTITPQEINGK	1	0	Oxidation (M)	2905.428	0.42800742	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	1	0	11	0											2						16.216	16.216	3	1.6708E-06	11110	DP690-11	125.91	101.27			NaN	NaN	NaN	0	0	Median	0	0	0	7309	476	6860	14530;14531	35678;35679	35678	581	2	9606
IVQVALNGLENILR	0	1	Unmodified	1550.9144	0.91442646	851;215	P52294;O15131;O60684	KPNA1;KPNA5;KPNA6	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-6;Importin subunit alpha-7	no	no	0	0	0	12	0												1					21.949	21.949	2	0.0032819	18328	DP690-12	87.363	70.731			0.97396	1.188	NaN	1	0	Median	2290400	1125700	1164600	7310	851;215	6861	14532	35680;35681	35681		2	9606
IVSRPEELREDDVGTGAGLLEIK	1	2	Unmodified	2495.3231	0.32313164	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	2	8	4				1								1					16.924	16.924	4	0.028481	11732	DP690-12	54.15	32.668			1.1794	1.2577	21.05	2	0	Median	113690000	56793000	56901000	7311	791	6862	14533;14534	35682;35683;35684	35683		3	9606
IVSSSDVGHDEYSTQSLVK	1	0	Unmodified	2049.9855	0.98547873	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	9.5	0.5									1	1							14.379	14.379	3	4.6045E-07	8586	DP690-10	139.12	114.82			0.79569	0.93098	NaN	1	0	Median	311040000	180350000	130690000	7312	1080	6863	14535;14536	35685;35686;35687;35688;35689	35687		5	9606
IVTGNFILR	0	1	Unmodified	1031.6128	0.61276513	1693	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	6	0						1											17.223	17.223	2	0.00065693	10939	DP690-6	143.11	82.135			0.86544	0.95598	NaN	1	0	Median	38865000	21063000	17801000	7313	1693	6864	14537	35690;35691;35692;35693	35693		4	9606
IVTTPQTVLR	0	1	Unmodified	1126.671	0.67100829	1538	Q7Z2W9	MRPL21	39S ribosomal protein L21, mitochondrial	yes	yes	0	0	0	16	0																1	14.461	14.461	2	0.0013295	7877	DP690-16	106.6	69.839			0.70026	0.80322	NaN	1	0	Median	32333000	19254000	13079000	7314	1538	6865	14538	35694;35695;35696;35697	35694		4	9606
IVVNLTGR	0	1	Unmodified	870.5287	0.52870115	968	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	16	0																1	14.751	14.751	2	0.04162	8120	DP690-16	124.59	44.655			0.89295	0.88491	NaN	1	0	Median	1800799999.9999998	925820000	874970000	7315	968	6866	14539	35698	35698		0	9606
IVVNLTGRLNK	1	1	Unmodified	1225.7507	0.7506556	968	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	1	16	0																1	14.253	14.253	3	0.011492	7563	DP690-16	73.885	55.749			0.82847	0.9299	NaN	1	0	Median	19693000	11264000	8429100	7316	968	6867	14540	35699;35700	35699		2	9606
IVYICCGEDHTAALTK	1	0	Unmodified	1849.8703	0.87025474	1416	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	3	0			1														14.456	14.456	3	0.0010052	7972	DP690-3	82.578	60.103			0.55961	0.60129	NaN	1	0	Median	16688000	9386400	7301500	7317	1416	6868	14541	35701;35702	35701		2	9606
IWCFGPDGTGPNILTDITK	1	0	Unmodified	2104.0299	0.029926505	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	11	0											1						22.731	22.731	2	3.5797E-11	20199	DP690-11	163.62	131.74			0.84967	1.0366	NaN	1	0	Median	27882000	15186000	12697000	7318	483	6869	14542	35703;35704;35705;35706	35704		4	9606
IWGLGFLPQVSTDLTPQTFSEK	1	0	Unmodified	2463.2686	0.26857687	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	11	0											1						24.077	24.077	2	3.4528E-11	21820	DP690-11	189.09	143.89			NaN	NaN	NaN	0	0	Median	4386700	4386700	0	7319	1613	6870	14543	35707	35707		1	9606
IWHHTFYNELR	0	1	Unmodified	1514.7419	0.74188183	926;1023;1029	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39;P63261;P68032;P68133	ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	12	3.8		2	1			6			1	1	2		1	29	2	2	22.179	22.179	2;3	9.3196E-06	7033	DP690-14	187.16	126.56			0.8597	1.0592	14.701	35	0	Median	50098000000	26057000000	24041000000	7320	926;1023;1029	6871	14544;14545;14546;14547;14548;14549;14550;14551;14552;14553;14554;14555;14556;14557;14558;14559;14560;14561;14562;14563;14564;14565;14566;14567;14568;14569;14570;14571;14572;14573;14574;14575;14576;14577;14578;14579;14580;14581;14582;14583;14584;14585;14586;14587;14588;14589;14590	35708;35709;35710;35711;35712;35713;35714;35715;35716;35717;35718;35719;35720;35721;35722;35723;35724;35725;35726;35727;35728;35729;35730;35731;35732;35733;35734;35735;35736;35737;35738;35739;35740;35741;35742;35743;35744;35745;35746;35747;35748;35749;35750;35751;35752;35753;35754;35755;35756;35757;35758;35759;35760;35761;35762;35763;35764;35765;35766;35767;35768;35769;35770;35771;35772;35773;35774;35775;35776;35777;35778;35779;35780;35781;35782;35783;35784;35785;35786;35787;35788;35789;35790;35791;35792;35793;35794;35795;35796;35797;35798;35799;35800;35801;35802;35803;35804;35805;35806;35807;35808;35809;35810;35811;35812;35813;35814;35815;35816;35817;35818;35819;35820;35821;35822;35823;35824;35825;35826	35719		119	9606
IWQNSLGMHPGQVETSPTFSDK	1	0	Unmodified	2458.1587	0.15870885	1395	Q4G112	HSF5	Heat shock factor protein 5	yes	yes	0	0	0	14	0														1			22.92	22.92	2	0.0095696	19269	DP690-14	59.225	59.225			0.86212	1.0377	NaN	1	0	Median	107890000	56720000	51170000	7321	1395	6872	14591	35827;35828;35829	35828		3	9606
IWSEPFYQETYLPYMIR	0	1	Oxidation (M)	2251.066	0.06597766	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									1								21.655	21.655	2	4.8433E-07	16834	DP690-9	145.31	118.78			0.70533	0.88073	NaN	1	0	Median	13461000	8186700	5274300	7322	1046	6873	14592	35830;35831;35832;35833;35834;35835	35834	1611	6	9606
IWSVPNASCVQVVR	0	1	Unmodified	1613.8348	0.83479593	2403	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	12	0												1					18.002	18.002	2	6.4875E-05	13202	DP690-12	124.67	89.662			0.69552	0.82596	NaN	1	0	Median	56002000	33944000	22058000	7323	2403	6874	14593	35836;35837;35838;35839	35837		4	9606
IWYHTFYNELR	0	1	Unmodified	1540.7463	0.7462985	1408	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	0	0	14	0														1			26.489	26.489	3	0.002722	23206	DP690-14	82.417	61.753			1.0932	1.2899	NaN	1	0	Median	652920	280100	372820	7324	1408	6875	14594	35840;35841	35840		2	9606
IYADTFGDINYQEFAK	1	0	Unmodified	1893.8785	0.87849447	1314	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	11	0											2						20.101	20.101	2	0.000351	16690	DP690-11	158.34	121.01			NaN	NaN	NaN	0	0	Median	15239000	15239000	0	7325	1314	6876	14595;14596	35842;35843	35843		2	9606
IYAPQGLLLTDPIER	0	1	Unmodified	1697.9352	0.93522148	1550	Q7Z5G4	GOLGA7	Golgin subfamily A member 7	yes	yes	0	0	0	16	0																1	20.42	20.42	2	0.0044189	15154	DP690-16	79.492	63.953			0.50484	0.58795	NaN	1	0	Median	1551600	915870	635730	7326	1550	6877	14597	35844;35845	35844		2	9606
IYCKPHFNQLFK	2	0	Unmodified	1593.8126	0.81260393	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	11	0											1						14.161	14.161	3	0.00020905	8162	DP690-11	111.27	88.715			0.88481	0.98268	NaN	1	0	Median	271800000	133880000	137920000	7327	2340	6878	14598	35846;35847;35848;35849	35847		4	9606
IYDLNKPEAEPK	2	0	Unmodified	1415.7296	0.72964538	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	1	10	4						1								1			12.447	12.447	2;3	0.0066108	5312	DP690-14	136.96	85.766			NaN	NaN	NaN	0	0	Median	16065000	7992300	8072900	7328	2474	6879	14599;14600	35850;35851	35850		2	9606
IYEFPETDDEEENK	1	0	Unmodified	1756.7316	0.73155546	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	13	0													1				16.099	16.099	2	1.1387E-05	10322	DP690-13	177.57	171.33			0.85885	0.99937	NaN	1	0	Median	26265000	14370000	11896000	7329	1351	6880	14601	35852;35853;35854;35855	35854		4	9606
IYEFPETDDEEENKLVK	2	0	Unmodified	2096.979	0.97899637	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	1	13	0													1				16.43	16.43	3	5.3459E-09	10677	DP690-13	178.22	109.46			0.74895	0.82171	NaN	1	0	Median	302440000	169060000	133380000	7330	1351	6881	14602	35856;35857;35858;35859	35858		4	9606
IYGADDIELLPEAQHK	1	0	Unmodified	1810.9101	0.91012895	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	9	3.46			1								3						17.752	17.752	2;3	4.6666E-08	13288	DP690-11	157.37	129.72			0.8267	0.85096	2.1307	2	0	Median	925440000	574060000	351380000	7331	470	6882	14603;14604;14605;14606	35860;35861;35862;35863;35864;35865;35866;35867;35868	35860		9	9606
IYGESADAVK	1	0	Unmodified	1051.5186	0.51858998	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	10	3.46				1								3					12.053	12.053	2	0.012293	4711	DP690-4	80.455	19.483			0.78784	0.85754	NaN	1	0	Median	10292000	5511700	4780100	7332	829	6883	14607;14608;14609;14610	35869;35870;35871;35872;35873	35872		5	9606
IYGESADAVKK	2	0	Unmodified	1179.6136	0.61355299	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	11.7	0.471											1	2					10.518	10.518	2;3	0.00094906	2879	DP690-12	102.07	76.259			0.87482	1.0162	11.689	3	0	Median	159740000	85639000	74104000	7333	829	6884	14611;14612;14613	35874;35875;35876;35877	35875		4	9606
IYGFYDECK	1	0	Unmodified	1193.5063	0.50631073	963;683;964	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	10	4						1								1			16.411	16.411	2	0.0018396	10871	DP690-14	116.73	105.36			0.94523	1.1441	NaN	1	0	Median	92314000	36705000	55609000	7334	963;964;683	6885	14614;14615	35878;35879;35880;35881;35882	35880		5	9606
IYGFYDECKR	1	1	Unmodified	1349.6074	0.60742176	963;683;964	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	1	14	0														1			14.39	14.39	3	0.011947	8075	DP690-14	66.92	43.244			0.75219	0.92221	NaN	1	0	Median	55990000	29175000	26815000	7335	963;964;683	6886	14616	35883;35884	35883		2	9606
IYGLGSLALYEK	1	0	Unmodified	1325.7231	0.72310344	678	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	14.5	0.5														1	1		19.801	19.801	2	0.0035497	15259	DP690-14	126.71	68.849			NaN	NaN	NaN	0	0	Median	52318000	0	52318000	7336	678	6887	14617;14618	35885;35886;35887;35888	35885		4	9606
IYHPNIDEK	1	0	Unmodified	1127.5611	0.56112349	1030	P68036;A0A1B0GUS4	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	no	0	0	0	8	0								2									11.294	11.294	2;3	0.0010191	3973	DP690-8	132.76	86.742			0.83239	0.96056	6.8613	2	0	Median	6267200	3420300	2846900	7337	1030	6888	14619;14620	35889;35890;35891;35892	35892		4	9606
IYHTIAYLTPLPQPNR	0	1	Unmodified	1896.0258	0.025767826	460	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	0	16	0																1	17.057	17.057	3	0.0093736	11169	DP690-16	59.709	41.034			0.63537	0.73896	NaN	1	0	Median	14109000	9058500	5050900	7338	460	6889	14621	35893;35894	35894		2	9606
IYIDSNNNPER	0	1	Unmodified	1333.6262	0.62624295	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	10	5.07		2								2	1			1	1	1	12.852	12.852	2	1.8741E-16	5179	DP690-2	203.35	139.86			0.8723	1.013	13.286	4	0	Median	114720000	56117000	58604000	7339	1075	6890	14622;14623;14624;14625;14626;14627;14628;14629	35895;35896;35897;35898;35899;35900;35901;35902;35903;35904;35905;35906;35907;35908;35909;35910	35909		16	9606
IYLTLLR	0	1	Unmodified	890.55894	0.55893865	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	4	0				1													18.746	18.746	2	0.0030546	13291	DP690-4	137.44	68.347			NaN	NaN	NaN	0	0	Median	8327200	8327200	0	7340	2000	6891	14630	35911;35912	35912		2	9606
IYNLGTGTGYSVLQMVQAMEK	1	0	2 Oxidation (M)	2334.1236	0.12356889	1274	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	2	0	6	0						1											19.702	19.702	2	0.047821	13719	DP690-6	69.878	22.449			NaN	NaN	NaN	0	0	Median	1420600	0	1420600	7341	1274	6892	14631	35913	35913		1	9606
IYPSREEYEAHQDR	0	2	Unmodified	1791.8176	0.81762554	1126	Q06587	RING1	E3 ubiquitin-protein ligase RING1	yes	yes	0	0	1	13	0													1				10.621	10.621	4	0.004491	2911	DP690-13	71.879	45.755			0.71329	0.81901	NaN	1	0	Median	327490000	184970000	142520000	7342	1126	6893	14632	35914;35915;35916	35914		3	9606
IYQYVINK	1	0	Unmodified	1039.5702	0.57023162	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	4	0				1													14.226	14.226	2	0.061481	7781	DP690-4	108.98	74.979			0.9125	0.92929	NaN	1	0	Median	449530000	238910000	210620000	7343	516	6894	14633	35917	35917		0	9606
IYSHSLLPVLR	0	1	Unmodified	1296.7554	0.75540662	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														16.556	16.556	3	3.8604E-05	10715	DP690-3	148.56	130.89			0.80553	0.84347	NaN	1	0	Median	126690000	71337000	55358000	7344	559	6895	14634	35918;35919;35920;35921	35921		4	9606
IYSNSLPPSAAVAASSSLR	0	1	Unmodified	1889.9847	0.98469087	2448	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	11	0											1						17.011	17.011	2	0.00043198	12350	DP690-11	124.42	42.892			NaN	NaN	NaN	0	0	Median	15159000	15159000	0	7345	2448	6896	14635	35922;35923	35922		2	9606
IYSYVVSRPQPR	0	2	Unmodified	1463.7885	0.78849767	1834	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	1	13	0													1				12.986	12.986	3	0.00162	6009	DP690-13	88.134	70.915			0.64104	0.73605	NaN	1	0	Median	80858000	44992000	35866000	7346	1834	6897	14636	35924	35924		1	9606
IYTPVEESSIGK	1	0	Unmodified	1321.6765	0.67654718	2400	Q9UM13	ANAPC10	Anaphase-promoting complex subunit 10	yes	yes	0	0	0	15	0															1		14.834	14.834	2	0.00038592	8520	DP690-15	115.7	91.61			0.86042	1.0147	NaN	1	0	Median	17021000	9519800	7501400	7347	2400	6898	14637	35925;35926;35927	35925		3	9606
IYVGNASVAQDIPK	1	0	Unmodified	1473.7827	0.78274359	833	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	0	0	8	0								1									16.411	16.411	2	0.0042656	9597	DP690-8	84.198	62.526			1.4168	1.6431	NaN	1	0	Median	4144800	1847900	2296900	7348	833	6899	14638	35928;35929	35928		2	9606
IYVGNLPPDIR	0	1	Unmodified	1255.6925	0.69247202	1136	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	15	0															1		17.053	17.053	2	0.0070491	11537	DP690-15	109.29	58.231			NaN	NaN	NaN	0	0	Median	39775000	39775000	0	7349	1136	6900	14639	35930;35931	35930		2	9606
IYVGNLPTDVR	0	1	Unmodified	1245.6717	0.67173657	1192	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	15	0															1		16.602	16.602	2	0.0015539	10858	DP690-15	101.9	70.136			0.79814	0.9171	NaN	1	0	Median	36185000	18486000	17698000	7350	1192	6901	14640	35932;35933	35933		2	9606
IYVISLAEPR	0	1	Unmodified	1159.6601	0.66010926	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	8	4				1								1					18.205	18.205	2	0.0011627	12543	DP690-4	107.69	91.491			0.94256	1.0864	NaN	1	0	Median	45972000	8789100	37183000	7351	495	6902	14641;14642	35934;35935;35936;35937;35938;35939	35936		6	9606
IYVSANSGAR	0	1	Unmodified	1036.5302	0.53015772	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															10.93	10.93	2	0.00031202	3084	DP690-2	124.08	48.342			1.1864	1.2398	NaN	1	0	Median	11031000	4737400	6293200	7352	1179	6903	14643	35940;35941;35942	35941		3	9606
KAAAAAWEEPSSGNGTAR	1	1	Unmodified	1772.8442	0.84417465	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	1	12	0												1					11.39	11.39	3	0.0026479	4055	DP690-12	58.864	40.997			0.60462	0.78336	NaN	1	0	Median	27377000	15492000	11885000	7353	2298	6904	14644	35943;35944	35943		2	9606
KAAAGELQEDSGLCVLAR	1	1	Unmodified	1886.952	0.95201054	1830	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	1	7	0							1										15.715	15.715	3	0.010772	9224	DP690-7	84.94	46.328			NaN	NaN	NaN	0	0	Median	5452700	0	5452700	7354	1830	6905	14645	35945	35945		1	9606
KAAAPAPEEEMDECEQALAAEPK	2	0	Oxidation (M)	2500.1098	0.10976932	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	1	1	13	0													3				14.01	14.01	2;3	4.2597E-16	7187	DP690-13	175.34	150.38			0.67901	0.74672	NaN	1	0	Median	264210000	160710000	103500000	7355	598	6906	14646;14647;14648	35946;35947;35948;35949;35950;35951;35952;35953;35954;35955	35946	795	10	9606
KAAAPAPEEEMDECEQALAAEPK	2	0	Unmodified	2484.1149	0.1148547	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	13	0													2				16.3	16.3	2;3	6.4429E-16	10489	DP690-13	174.19	135.77			0.68782	0.75867	NaN	1	0	Median	207520000	112550000	94977000	7356	598	6906	14649;14650	35956;35957;35958;35959;35960	35958		5	9606
KAAAQLLQSQAQQSGAQQTK	2	0	Unmodified	2084.0974	0.097429219	2231	Q9NVA2	SEPT11	Septin-11	yes	yes	0	0	1	13	0													1				11.737	11.737	3	2.8366E-12	4337	DP690-13	164.99	151.95			0.94609	1.0765	NaN	1	0	Median	23155000	9889400	13265000	7357	2231	6907	14651	35961;35962;35963;35964	35962		4	9606
KAALDEAQGVGLDSTGYYDQEIYGGSDSR	1	1	Unmodified	3064.3898	0.38976723	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	10	0										1							17.734	17.734	3	1.4858E-25	13488	DP690-10	185.65	171.13			0.89152	1.1208	NaN	1	0	Median	78469000	37935000	40534000	7358	263	6908	14652	35965;35966;35967	35965		3	9606
KAALEAQNALHNMK	2	0	Unmodified	1537.8035	0.8034958	1795	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	1	12	0												1					11.322	11.322	3	0.0059659	3946	DP690-12	75.911	44.255			NaN	NaN	NaN	0	0	Median	22897000	22897000	0	7359	1795	6909	14653	35968;35969	35969		2	9606
KACGDSTLTQITAGLDPVGR	1	1	Unmodified	2059.0368	0.036802797	1001	P62879	GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	yes	yes	0	0	1	14	0														1			18.183	18.183	3	0.022129	13329	DP690-14	47.75	47.75			0.69031	0.83583	NaN	1	0	Median	67141000	36575000	30566000	7360	1001	6910	14654	35970	35970		1	9606
KADEVLEILK	2	0	Unmodified	1156.6703	0.67033959	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	10	0										1							16.358	16.358	2	0.00053175	11514	DP690-10	126.03	99.236			0.88239	1.0556	NaN	1	0	Median	139780000	73978000	65804000	7361	269	6911	14655	35971	35971		1	9606
KAEAATEACQLPTSSGDAGR	1	1	Unmodified	2018.9327	0.93273166	1606	Q8IWE4	DCUN1D3	DCN1-like protein 3	yes	yes	0	0	1	14	0														1			11.71	11.71	3	3.864E-07	4360	DP690-14	138.28	138.28			0.7403	0.92172	NaN	1	0	Median	44760000	26015000	18746000	7362	1606	6912	14656	35972;35973;35974;35975	35975		4	9606
KAEAGAGSATEFQFR	1	1	Unmodified	1568.7583	0.75831975	762	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	1	13.3	3.77								1								2	13.725	13.725	2;3	2.4107E-16	6866	DP690-16	290.1	269.26			0.89422	0.90388	14.904	3	0	Plateau	426810000	214950000	211860000	7363	762	6913	14657;14658;14659	35976;35977;35978;35979;35980;35981;35982;35983;35984;35985;35986;35987;35988;35989;35990;35991;35992;35993;35994	35984		19	9606
KAEDIENDALSPEEQEECK	2	0	Unmodified	2232.9692	0.96923632	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	1	10	0										1							13.936	13.936	3	0.057287	7977	DP690-10	58.93	34.262			NaN	NaN	NaN	0	0	Median	20695000	20695000	0	7364	808	6914	14660	35995;35996	35996		2	9606
KAEDIENDALSPEEQEECKNYLR	2	1	Unmodified	2779.2607	0.26066732	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	2	9.5	0.5									1	1							15.405	15.405	3;4	6.6466E-24	10127	DP690-10	198.47	177.54			0.59583	0.63752	NaN	1	0	Median	29466000	24714000	4752300	7365	808	6915	14661;14662	35997;35998;35999	35997		3	9606
KAEEELGELEAK	2	0	Unmodified	1344.6773	0.67727546	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	1	9.5	0.5									1	1							13.1	13.1	2	0.00017507	6722	DP690-10	210.44	125.28			0.81527	0.9698	NaN	1	0	Median	153360000	85338000	68020000	7366	2424	6916	14663;14664	36000;36001;36002	36001		3	9606
KAEELTQTNMQLQNEVSMLK	2	0	Oxidation (M)	2350.1508	0.15084628	1099	Q02930	CREB5	Cyclic AMP-responsive element-binding protein 5	yes	yes	0	1	1	6	0						1											19.683	19.683	2	0.0094267	13689	DP690-6	101.45	61.722			NaN	NaN	NaN	0	0	Median	1864700	1864700	0	7367	1099	6917	14665	36003	36003	1717	1	9606
KAEGTVFTEEDFQK	2	0	Unmodified	1627.773	0.77296676	1583	Q86WX3	RPS19BP1	Active regulator of SIRT1	yes	yes	0	0	1	16	0																1	14.377	14.377	2	3.9542E-05	7793	DP690-16	158.34	96.744			NaN	NaN	NaN	0	0	Median	2910600	2910600	0	7368	1583	6918	14666	36004	36004		1	9606
KAEGTVFTEEDFQKFQQEYFGS	2	0	Unmodified	2614.1864	0.18636339	1583	Q86WX3	RPS19BP1	Active regulator of SIRT1	yes	yes	0	0	2	16	0																1	20.874	20.874	3	0.0037483	15708	DP690-16	63.936	57.166			0.93435	1.0701	NaN	1	0	Median	4685700	2458000	2227700	7369	1583	6919	14667	36005;36006	36005		2	9606
KAEQGSEEEGEGEEEEEEGGESK	2	0	Unmodified	2480.9787	0.97867461	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	1	11	0											1						10.585	10.585	3	2.7399E-14	2932	DP690-11	195.13	145.74			NaN	NaN	NaN	0	0	Median	0	0	0	7370	1687	6920	14668	36007	36007		1	9606
KAEYPFSSEQK	2	0	Unmodified	1312.6299	0.62993134	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	1	11	0											3						11.797	11.797	2	1.0487E-12	4761	DP690-11	226.29	115.12			0.74956	0.87211	NaN	1	0	Median	69481000	43137000	26344000	7371	1068	6921	14669;14670;14671	36008;36009;36010;36011	36010		4	9606
KAFGEFNVQTAK	2	0	Unmodified	1338.6932	0.6932003	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	1	4	0				1													13.613	13.613	3	0.00064258	6712	DP690-4	130.69	89.691			NaN	NaN	NaN	0	0	Median	66153000	0	66153000	7372	1784	6922	14672	36012;36013	36012		2	9606
KAFPEHLYQR	1	1	Unmodified	1287.6724	0.67240528	1259	Q14194	CRMP1	Dihydropyrimidinase-related protein 1	yes	yes	0	0	1	4	0				1													11.16	11.16	3	0.063555	3576	DP690-4	76.943	43.402			NaN	NaN	NaN	0	0	Median	2550600	2550600	0	7373	1259	6923	14673	36014;36015	36015		2	9606
KAGNFYVPAEPK	2	0	Unmodified	1319.6874	0.68738664	525	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	15	0															1		13.097	13.097	2	0.00064968	6141	DP690-15	174.57	138.19			0.80124	0.91762	NaN	1	0	Median	59018000	32346000	26672000	7374	525	6924	14674	36016;36017;36018;36019;36020	36017		5	9606
KAHQLWLSVEALK	2	0	Unmodified	1521.8667	0.86674799	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	1	11	0											1						16.034	16.034	3	0.0021587	10926	DP690-11	79.744	79.744			0.75767	0.86765	NaN	1	0	Median	110720000	59482000	51241000	7375	1375	6925	14675	36021;36022;36023	36022		3	9606
KAIACLLFGGSR	1	1	Unmodified	1291.7071	0.70707622	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	11	0											1						16.846	16.846	3	0.0078017	12124	DP690-11	51.612	37.05			0.82889	1.0212	NaN	1	0	Median	22055000	13024000	9031200	7376	652	6926	14676	36024	36024		1	9606
KAILCLLLGGVER	1	1	Unmodified	1440.8487	0.84865508	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	11	0											1						20.138	20.138	3	0.0010187	16742	DP690-11	88.224	73.193			0.78291	0.95565	NaN	1	0	Median	53996000	30408000	23588000	7377	581	6927	14677	36025;36026;36027	36025		3	9606
KALAAAGYDVEK	2	0	Unmodified	1234.6558	0.65575216	504;456;1094	P10412;P16402;P22492;P16403;Q02539	HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1C;HIST1H1A	Histone H1.4;Histone H1.3;Histone H1t;Histone H1.2;Histone H1.1	no	no	0	0	1	14.3	0.471														2	1		11.522	11.522	2;3	0.0003721	4087	DP690-14	162.68	100.99			0.97545	1.1062	26.415	3	0	Median	188120000	89859000	98260000	7378	456;504;1094	6928	14678;14679;14680	36028;36029;36030;36031;36032;36033;36034;36035	36031		8	9606
KANNSQEPSPQLASSVASTR	1	1	Unmodified	2071.0294	0.029409233	1869	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	1	12	0												1					12.716	12.716	3	0.0005477	5966	DP690-12	80.733	57.05			0.9879	1.2724	NaN	1	0	Median	24650000	12938000	11711000	7379	1869	6929	14681	36036;36037	36037		2	9606
KAPGCVLSNPDQK	2	0	Unmodified	1412.7082	0.70819844	423	P08651	NFIC	Nuclear factor 1 C-type	yes	yes	0	0	1	13	0													1				10.597	10.597	3	0.011151	2907	DP690-13	86.699	33.665			NaN	NaN	NaN	0	0	Median	0	0	0	7380	423	6930	14682	36038	36038		1	9606
KAPIQTYVLGANNQETVK	2	0	Unmodified	1973.0582	0.058190166	1464	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	1	12	0												1					14.454	14.454	3	9.3963E-07	8213	DP690-12	132.9	113.18			0.82317	0.94407	NaN	1	0	Median	59365000	32267000	27098000	7381	1464	6931	14683	36039;36040;36041	36039		3	9606
KAQDEGLLSDVVPFKVPGK	3	0	Unmodified	2026.1099	0.10989139	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	2	13	0													2				18.339	18.339	3;4	0.00085725	13248	DP690-13	84.436	84.436			0.51571	0.54021	23.957	2	0	Median	153650000	95385000	58268000	7382	894	6932	14684;14685	36042;36043;36044;36045	36042		4	9606
KAQPAQPADEPAEKADEPMEH	2	0	Oxidation (M)	2304.0328	0.032839631	586	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	1	2	7	0							1										10.281	10.281	3	0.05129	2656	DP690-7	65.808	9.0622			NaN	NaN	NaN	0	0	Median	0	0	0	7383	586	6933	14686	36046	36046	776	1	9606
KASELPVSEVASILQADLQNGLNK	2	0	Unmodified	2523.3544	0.35443177	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	1	11	0											1						23.167	23.167	3	3.2448E-10	20724	DP690-11	146.25	134.45			0.83007	1.0013	NaN	1	0	Median	18076000	9209200	8866900	7384	1068	6934	14687	36047	36047		1	9606
KASGPPVSELITK	2	0	Unmodified	1325.7555	0.7554662	504;456	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	1	11	5.79	1													2	1		13.484	13.484	2;3	3.7594E-05	6737	DP690-14	139.19	105.1			1.1577	1.2884	25.657	3	0	Plateau	744360000	427540000	316830000	7385	456;504	6935	14688;14689;14690;14691	36048;36049;36050;36051;36052;36053;36054;36055;36056;36057;36058;36059	36056		12	9606
KAVIFCLSADKK	3	0	Unmodified	1378.7643	0.76425675	932	P60981	DSTN	Destrin	yes	yes	0	0	2	8	0								1									12.782	12.782	3	0.032003	5651	DP690-8	57.52	57.52			0.75123	0.83718	NaN	1	0	Median	9785500	5345000	4440500	7386	932	6936	14692	36060	36060		1	9606
KAVLFCLSEDKK	3	0	Unmodified	1436.7697	0.76973606	572	P23528	CFL1	Cofilin-1	yes	yes	0	0	2	10.7	3.77								2								1	13.128	13.128	2;3	0.00020015	6040	DP690-16	163.45	142.09			0.82498	0.95063	11.464	3	0	Plateau	370050000	199260000	170790000	7387	572	6937	14693;14694;14695	36061;36062;36063;36064;36065;36066;36067;36068;36069	36062		9	9606
KAVQGGGATPVVGAVQGPVPGMPPMTQAPR	1	1	2 Oxidation (M)	2886.4844	0.48441686	429	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	2	1	14	0														1			14.365	14.365	3	1.7625E-06	8017	DP690-14	97.469	66.198			NaN	NaN	NaN	0	0	Median	0	0	0	7388	429	6938	14696	36070	36070	498;499	1	9606
KAYLPQELLGK	2	0	Unmodified	1258.7285	0.72852317	832	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	1	14	0														1			15.731	15.731	2	0.0025663	9874	DP690-14	105.13	52.045			0.7258	0.81365	NaN	1	0	Median	46440000	25894000	20546000	7389	832	6939	14697	36071;36072	36071		2	9606
KCAGCTNPISGLGGTK	2	0	Unmodified	1619.776	0.77596042	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	14	0														1			12.568	12.568	3	0.00050494	5483	DP690-14	88.951	65.967			0.92328	1.0327	NaN	1	0	Median	95348000	53185000	42163000	7390	1258	6940	14698	36073;36074;36075;36076	36075		4	9606
KCDLISIPK	2	0	Unmodified	1072.5951	0.59506616	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	1	13	0													1				14.058	14.058	2	0.001788	7396	DP690-13	131.11	59.763			0.85352	0.94293	NaN	1	0	Median	185840000	99519000	86318000	7391	2395	6941	14699	36077;36078	36078		2	9606
KCEPIIMTVPR	1	1	Oxidation (M)	1358.705	0.70502731	2395	Q9ULV4;Q6QEF8	CORO1C;CORO6	Coronin-1C;Coronin-6	yes	no	0	1	1	13	0													2				12.555	12.555	2;3	0.001403	5264	DP690-13	86.911	62.058			0.77653	0.85613	0.38231	2	0	Median	318910000	176890000	142020000	7392	2395	6942	14700;14701	36079;36080;36081;36082;36083;36084;36085;36086	36081	2825	8	9606
KCEPIIMTVPR	1	1	Unmodified	1342.7101	0.71011269	2395	Q9ULV4;Q6QEF8	CORO1C;CORO6	Coronin-1C;Coronin-6	yes	no	0	0	1	13	0													1				14.443	14.443	2	0.00022501	7880	DP690-13	132.32	96.667			0.72771	0.79837	NaN	1	0	Median	159870000	89922000	69947000	7393	2395	6942	14702	36087;36088;36089;36090	36087		4	9606
KCPFTGNVSIR	1	1	Unmodified	1277.655	0.65504065	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	16	0																1	13.055	13.055	2	0.0017272	5959	DP690-16	108.47	72.759			0.73965	0.83754	NaN	1	0	Median	15386000	8483300	6902800	7394	976	6943	14703	36091;36092;36093;36094	36091		4	9606
KCPSTHSEELHDCIQK	2	0	Unmodified	1967.8829	0.88294469	777	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	1	7	0							1										10.227	10.227	4	0.0003864	2593	DP690-7	89.911	61.556			0.7166	0.76616	NaN	1	0	Median	11832000	7506800	4325300	7395	777	6944	14704	36095;36096;36097	36097		3	9606
KCSLSLVGR	1	1	Unmodified	1018.5593	0.55934935	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	6	0						1											11.84	11.84	2	0.014458	4408	DP690-6	93.162	60.35			0.84952	0.95206	NaN	1	0	Median	9178100	4397700	4780500	7396	1258	6945	14705	36098	36098		1	9606
KDAEAWFNEK	2	0	Unmodified	1236.5775	0.57750184	42	CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7	KRT10;KRT28	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28	yes	no	0	0	1	2.5	1.5	1			1													14.052	14.052	2	8.1404E-06	5740	DP690-1	167.12	92.195		+	NaN	NaN	NaN	0	0	Median	7794100	7794100	0	7397	42	6946	14706;14707	36099;36100	36099		2	9606
KDCEVVMMIGLPGAGK	2	0	2 Oxidation (M)	1735.8307	0.83069811	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	2	1	3	0			1														14.946	14.946	3	0.0581	8594	DP690-3	51.591	24.252			NaN	NaN	NaN	0	0	Median	0	0	0	7398	1078	6947	14708	36101	36101		1	9606
KDDEENYLDLFSHK	2	0	Unmodified	1751.8002	0.80024414	1133	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	1	12	0												2					17.375	17.375	2;3	1.2214E-16	12308	DP690-12	266.07	237.96			0.57983	0.64766	33.471	2	0	Median	1664799999.9999998	926300000	738550000	7399	1133	6948	14709;14710	36102;36103;36104;36105;36106;36107	36105		6	9606
KDDINLLPSK	2	0	Unmodified	1141.6343	0.63428844	2396	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	1	9	0									1								11.672	11.672	3	0.00047214	4147	DP690-9	85.807	16.209			0.7252	0.89329	NaN	1	0	Median	4120200	2576400	1543800	7400	2396	6949	14711	36108;36109;36110;36111	36110		4	9606
KDDPLTNLNTAFDVAEK	2	0	Unmodified	1889.9371	0.93707198	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	1	7	4			1								1						18.748	18.748	3	0.0037736	13498	DP690-3	97.095	62.58			NaN	NaN	NaN	0	0	Median	57582000	49605000	7977300	7401	476	6950	14712;14713	36112;36113	36113		2	9606
KDDPTLLSSGR	1	1	Unmodified	1187.6146	0.61461563	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	1	7	0							1										11.543	11.543	2	2.7364E-06	4189	DP690-7	228.2	178.78			0.70366	0.74164	NaN	1	0	Median	56054000	32087000	23967000	7402	557	6951	14714	36114;36115;36116;36117;36118	36117		5	9606
KDEESGGGSNPFQHLEK	2	0	Unmodified	1857.8493	0.8493196	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	1	3	0			1														12.871	12.871	3	0.00067473	5880	DP690-3	76.586	76.586			4.3291	4.676	NaN	1	0	Median	22991000	4826800	18164000	7403	2515	6952	14715	36119	36119		1	9606
KDELSDWSLAGEDDRDSR	1	2	Unmodified	2092.9298	0.92975477	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	2	12	0												1					15.567	15.567	3	1.0693E-06	9776	DP690-12	137.17	137.17			0.7626	0.83754	NaN	1	0	Median	174720000	101270000	73454000	7404	829	6953	14716	36120;36121	36121		2	9606
KDENESSAPADGEGGSELQPK	2	0	Unmodified	2143.9505	0.95054979	1338	Q15554	TERF2	Telomeric repeat-binding factor 2	yes	yes	0	0	1	12	0												1					11.156	11.156	3	0.00040747	3713	DP690-12	84.371	58.568			0.55978	0.65875	NaN	1	0	Median	14173000	7879100	6293600	7405	1338	6954	14717	36122;36123;36124;36125;36126	36124		5	9606
KDEQTGAIIVAR	1	1	Unmodified	1299.7147	0.71466402	1435	Q5T2T1	MPP7	MAGUK p55 subfamily member 7	yes	yes	0	0	1	12	0												1					11.777	11.777	2	7.5491E-05	4608	DP690-12	185.96	150.51			0.80973	1.03	NaN	1	0	Median	19766000	10892000	8873700	7406	1435	6955	14718	36127;36128;36129;36130	36130		4	9606
KDGNASGTTLLEALDCILPPTRPTDK	2	1	Unmodified	2782.4171	0.41710838	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	2	9	4					1								1				21.314	21.314	4	0.00046561	15673	DP690-5	91.733	74.92			0.73398	0.79372	3.8591	2	0	Median	80158000	47636000	32523000	7407	1031	6956	14719;14720	36131;36132;36133;36134;36135	36132		5	9606
KDGSCGVAYVVQEPGDYEVSVK	2	0	Unmodified	2385.1158	0.11584098	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	9.75	0.433									1	3							16.763	16.763	2;3	1.3964E-07	11693	DP690-10	166.62	128.96			0.68903	0.80109	14.877	3	0	Plateau	418080000	253060000	165020000	7408	549	6957	14721;14722;14723;14724	36136;36137;36138;36139;36140;36141;36142;36143;36144;36145	36142		10	9606
KDHPFGFVAVPTK	2	0	Unmodified	1441.7718	0.77178497	1024	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	0	1	12	4								1								1	14.34	14.34	3	0.00019822	7642	DP690-16	106.55	106.55			0.73278	0.82891	7.9775	2	0	Median	165910000	96155000	69750000	7409	1024	6958	14725;14726	36146;36147;36148;36149;36150;36151	36149		6	9606
KDIENQYETQITQIEHEVSSSGQEVQSSAK	2	0	Unmodified	3391.6016	0.60155092	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	8.25	4.97	1							1	1						1		19.391	19.391	4	1.1114E-07	10942	DP690-1	120.64	97.074		+	NaN	NaN	NaN	0	0	Median	21782000	21782000	0	7410	667	6959	14727;14728;14729;14730	36152;36153;36154;36155;36156;36157	36153		6	9606
KDLEEAGGLGTEFSELPGK	2	0	Unmodified	1975.9739	0.97385141	781	P48681	NES	Nestin	yes	yes	0	0	1	10	0										2							17.355	17.355	2;3	7.2159E-11	12861	DP690-10	159.95	137.13			0.83124	0.95434	NaN	1	0	Median	239520000	130200000	109320000	7411	781	6960	14731;14732	36158;36159;36160;36161;36162	36158		5	9606
KDLHDANTDLIGR	1	1	Unmodified	1466.7478	0.74775506	882	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	1	14	0														1			11.908	11.908	3	0.0072785	4642	DP690-14	53.377	36.715			0.82381	1.0334	NaN	1	0	Median	19022000	10467000	8555700	7412	882	6961	14733	36163;36164	36163		2	9606
KDLYANTVLSGGTTMYPGIADR	1	1	Oxidation (M)	2358.1526	0.15256084	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	1	11.9	3.5						2			2					5	1	1	17.215	17.215	2;3	5.0693E-29	11636	DP690-14	222.09	171.62			0.77474	0.86606	22.201	6	0	Median	4602800000	2515100000	2087699999.9999998	7413	926;1023	6962	14734;14735;14736;14737;14738;14739;14740;14741;14742;14743;14744	36165;36166;36167;36168;36169;36170;36171;36172;36173;36174;36175;36176;36177;36178;36179;36180;36181;36182;36183;36184;36185;36186;36187;36188;36189;36190;36191;36192;36193;36194	36169	1424	29	9606
KDLYANTVLSGGTTMYPGIADR	1	1	Unmodified	2342.1576	0.15764621	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	13.6	1.56									1					8	1		21.259	21.259	2;3	1.3943E-82	12957	DP690-14	375.27	339.5			0.84109	0.6345	23.217	8	0	Linear	7069999999.999999	3948299999.9999995	3121699999.9999995	7414	926;1023	6962	14745;14746;14747;14748;14749;14750;14751;14752;14753;14754	36195;36196;36197;36198;36199;36200;36201;36202;36203;36204;36205;36206;36207;36208;36209;36210;36211;36212;36213;36214;36215;36216;36217;36218;36219;36220;36221	36204		27	9606
KDNDFIYHDR	1	1	Unmodified	1321.6051	0.60511357	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	1	3	0			1														10.954	10.954	3	2.7055E-05	3342	DP690-3	146.71	134.21			0.95961	1.0643	NaN	1	0	Median	45629000	23787000	21842000	7415	1739	6963	14755	36222;36223;36224	36222		3	9606
KDPETYEVDSGTTK	2	0	Unmodified	1568.7206	0.72059684	1386	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	yes	yes	0	0	1	13	0													1				10.901	10.901	2	0.0028018	3301	DP690-13	96.82	72.833			0.65516	0.74089	NaN	1	0	Median	4282600	2570900	1711700	7416	1386	6964	14756	36225;36226;36227	36225		3	9606
KDPQGLGLHFYK	2	0	Unmodified	1401.7405	0.74048484	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	1	10.5	0.5										1	1						13.984	13.984	3	0.00023904	7932	DP690-10	107.09	69.097			0.63557	0.67984	2.9729	2	0	Median	1237000000	748970000	488000000	7417	272	6965	14757;14758	36228;36229;36230;36231;36232;36233;36234	36229		7	9606
KDPSKNQGGGLSSSGAGEGQGPK	3	0	Unmodified	2142.0301	0.030137515	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	2	2	0		1															10.268	10.268	4	0.075844	2238	DP690-2	43.888	18.48			1.0024	1.068	NaN	1	0	Median	6936500	3462100	3474400	7418	408	6966	14759	36235	36235		1	9606
KDSEDMGVVVSLGTGNR	1	1	Oxidation (M)	1778.8469	0.84687676	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	1	11	0											1						13.955	13.955	3	0.049005	7897	DP690-11	69.289	35.106			NaN	NaN	NaN	0	0	Median	37193000	0	37193000	7419	897	6967	14760	36236	36236	1390	1	9606
KDSLSVNEFK	2	0	Unmodified	1165.5979	0.59790293	1944	Q99584	S100A13	Protein S100-A13	yes	yes	0	0	1	12	4								1								1	13.183	13.183	2	7.1535E-05	6184	DP690-16	188.91	142.94			0.9652	1.0923	NaN	1	0	Median	35265000	14757000	20508000	7420	1944	6968	14761;14762	36237;36238;36239;36240;36241;36242	36238		6	9606
KDVDNAYMIK	2	0	Oxidation (M)	1211.5856	0.58562368	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	1	1	0	1																11.016	11.016	2	0.0085709	2961	DP690-1	123.75	69.974		+	NaN	NaN	NaN	0	0	Median	2240500	2240500	0	7421	44	6969	14763	36243;36244	36244	54	2	9606
KDVLTAHPAAPGPVSR	1	1	Unmodified	1614.8842	0.88418897	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	1	9.67	0.943									2		1						11.392	11.392	3;4	6.7458E-07	4190	DP690-11	140.49	117.57			0.57181	0.69341	3.9317	3	0	Plateau	96576000	62637000	33939000	7422	295	6970	14764;14765;14766	36245;36246;36247;36248;36249;36250;36251;36252;36253	36246		8	9606
KDYEEIGPSICR	1	1	Unmodified	1465.6871	0.68712864	940	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	1	13	0													2				13.68	13.68	2;3	0.000412	6864	DP690-13	122.18	93.008			1.0467	1.2462	34.679	2	0	Median	94314000	45644000	48670000	7423	940	6971	14767;14768	36254;36255;36256	36254		3	9606
KDYNEAYNYYTK	2	0	Unmodified	1570.694	0.69398816	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	1	4	0				2													13.339	13.339	2	0.00051469	6338	DP690-4	182.23	153.54			NaN	NaN	NaN	0	0	Median	0	0	0	7424	1946	6972	14769;14770	36257;36258	36257		2	9606
KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK	2	0	Unmodified	3438.6218	0.62177455	1389	Q3ZCM7	TUBB8	Tubulin beta-8 chain	yes	yes	0	0	1	10.3	3.77					1								2				18.929	18.929	3;4	1.4553E-11	14062	DP690-13	132.56	0			0.9949	1.0349	0.82862	2	0	Median	323960000	156650000	167320000	7425	1389	6973	14771;14772;14773	36259;36260;36261;36262;36263;36264;36265;36266;36267;36268	36261		10	9606
KEASDPQPEEADGGLK	2	0	Unmodified	1669.7795	0.7795087	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	1	10.6	3.96						3								4			10.662	10.662	2;3	3.1132E-27	3013	DP690-14	319.64	270.58			0.72367	0.80736	16.449	3	0	Plateau	266130000	136230000	129900000	7426	864	6974	14774;14775;14776;14777;14778;14779;14780	36269;36270;36271;36272;36273;36274;36275;36276;36277;36278;36279;36280;36281	36269		13	9606
KEDLYLKPIQR	2	1	Unmodified	1401.798	0.79799972	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	2	7.67	3.4			1						1		1						12.564	12.564	3	0.00013204	5821	DP690-11	121.29	98.567			0.82593	0.99913	8.7022	3	0	Plateau	572240000	299390000	272850000	7427	483	6975	14781;14782;14783	36282;36283;36284;36285;36286;36287;36288;36289	36285		8	9606
KEDMFKDNFDEMDTSR	2	1	2 Oxidation (M)	2038.8248	0.82482069	567	P23258	TUBG1	Tubulin gamma-1 chain	yes	yes	0	2	2	13	0													1				12.342	12.342	3	0.0014919	4988	DP690-13	75.911	58.282			0.92632	1.0227	NaN	1	0	Median	20665000	10058000	10606000	7428	567	6976	14784	36290;36291	36290	751;752	2	9606
KEEEAYFER	1	1	Unmodified	1199.5459	0.54586736	1949	Q99633	PRPF18	Pre-mRNA-splicing factor 18	yes	yes	0	0	1	14	0														1			11.694	11.694	2	0.00010639	4359	DP690-14	182.53	83.536			NaN	NaN	NaN	0	0	Median	0	0	0	7429	1949	6977	14785	36292	36292		1	9606
KEEEEEEEEYDEGSNLKK	3	0	Unmodified	2212.9495	0.94954674	1255	Q14165	MLEC	Malectin	yes	yes	0	0	2	15	0															1		11.287	11.287	3	2.4121E-14	3826	DP690-15	195.17	185.65			0.76776	0.83635	NaN	1	0	Median	12960000	6812500	6147700	7430	1255	6978	14786	36293;36294;36295;36296;36297;36298	36293		6	9606
KEEELQAALAR	1	1	Unmodified	1256.6725	0.67246486	668;1543	P35579;Q7Z406	MYH9;MYH14	Myosin-9;Myosin-14	no	no	0	0	1	4.25	3.34		2	1							1							13.009	13.009	2;3	5.8608E-06	6559	DP690-10	205.59	60.936			1.0272	1.0112	8.5793	3	0	Median	175150000	86720000	88431000	7431	668;1543	6979	14787;14788;14789;14790	36299;36300;36301;36302;36303;36304;36305	36300		7	9606
KEEENASVIDSAELQAYPALVVEK	2	0	Unmodified	2631.3279	0.32794224	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									2								18.982	18.982	2;3	6.2507E-11	13571	DP690-9	158.75	123.58			0.80692	0.95317	30.51	2	0	Median	116150000	68260000	47886000	7432	1046	6980	14791;14792	36306;36307;36308;36309;36310	36307		5	9606
KEELNAISGPNEFAEFYNR	1	1	Unmodified	2227.0546	0.054561351	1166	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	1	12	0												1					18.385	18.385	3	0.0047834	13758	DP690-12	58.93	43.416			0.56782	0.72975	NaN	1	0	Median	23713000	15368000	8345500	7433	1166	6981	14793	36311	36311		1	9606
KEELTLEGIK	2	0	Unmodified	1158.6496	0.64960415	1266	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	0	1	13	0													1				14.29	14.29	2	0.00010405	7793	DP690-13	171.33	109.65			0.73476	0.8271	NaN	1	0	Median	49435000	26238000	23197000	7434	1266	6982	14794	36312;36313	36313		2	9606
KEELTLEGIR	1	1	Unmodified	1186.6558	0.65575216	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	1	13	0													1				14.553	14.553	2	0.00020018	8048	DP690-13	151.83	88.292			0.95098	0.99377	NaN	1	0	Median	340750000	173620000	167130000	7435	927	6983	14795	36314;36315;36316;36317	36317		4	9606
KEELVAEQALK	2	0	Unmodified	1256.6976	0.69761697	2519	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	1	13	0													1				12.719	12.719	2	0.0033427	5602	DP690-13	102.05	0			0.82556	0.94535	NaN	1	0	Median	14775000	7412000	7362800	7436	2519	6984	14796	36318	36318		1	9606
KEELVPSEEDFQGITPGAQGPSSR	1	1	Unmodified	2557.2296	0.22962518	238	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	1	11	0											1						17.003	17.003	3	0.0059727	12336	DP690-11	68.309	39.183			NaN	NaN	NaN	0	0	Median	35929000	35929000	0	7437	238	6985	14797	36319;36320;36321;36322	36321		4	9606
KEENLADWYSQVITK	2	0	Unmodified	1822.9101	0.91012895	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	10	0										1							19.103	19.103	3	0.013641	15491	DP690-10	67.994	38.895			NaN	NaN	NaN	0	0	Median	55054000	55054000	0	7438	408	6986	14798	36323	36323		1	9606
KEEQLSSYEDK	2	0	Unmodified	1354.6252	0.62523989	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	1	10	0										4							10.843	10.843	2	6.257200000000001E-64	3444	DP690-10	317.75	241.28			NaN	NaN	NaN	0	0	Median	20006000	0	20006000	7439	1794	6987	14799;14800;14801;14802	36324;36325;36326;36327	36326		4	9606
KEESEESDDDMGFGLFD	1	0	Oxidation (M)	1964.7469	0.74694752	384;383	P05387;P05386	RPLP2;RPLP1	60S acidic ribosomal protein P2;60S acidic ribosomal protein P1	no	no	0	1	1	16	0																1	19.484	19.484	2	3.2554E-08	13984	DP690-16	177.83	177.83			0.91332	1.0228	NaN	1	0	Median	62487000	31620000	30866000	7440	384;383	6988	14803	36328;36329;36330;36331	36329	405	4	9606
KEETQPPVALK	2	0	Unmodified	1238.6871	0.68705229	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	13	0													1				10.667	10.667	2	0.0022479	3132	DP690-13	106.4	35.583			0.73211	0.81165	NaN	1	0	Median	145030000	82367000	62660000	7441	1678	6989	14804	36332	36332		1	9606
KEFLHAQEEVK	2	0	Unmodified	1356.7038	0.70376498	743	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	1	13	0													1				16.018	16.018	3	0.075604	10395	DP690-13	37.681	7.1307			0.94621	1.0443	NaN	1	0	Median	198890000	102390000	96503000	7442	743	6990	14805	36333	36333		1	9606
KEFSPFGTITSAK	2	0	Unmodified	1411.7347	0.73473076	471	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	1	12	0												1					15.643	15.643	2	1.6134E-06	9929	DP690-12	167.84	107.91			NaN	NaN	NaN	0	0	Median	20020000	0	20020000	7443	471	6991	14806	36334;36335	36334		2	9606
KEGGLGPLNIPLLADVTR	1	1	Unmodified	1862.0625	0.062547262	643	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	1	10.6	4.03							2	1							1	1	21.276	21.276	2;3	1.7243E-07	15963	DP690-7	134.08	102.97			0.71505	0.77426	6.1757	4	0	Median	165170000	94356000	70811000	7444	643	6992	14807;14808;14809;14810;14811	36336;36337;36338;36339;36340;36341;36342;36343;36344;36345;36346;36347;36348;36349;36350;36351;36352;36353;36354;36355;36356;36357;36358;36359;36360;36361;36362;36363;36364;36365	36348		30	9606
KEGSDGPLATSKPVPAEK	3	0	Unmodified	1809.9472	0.94724273	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	2	8	4				1								1					10.405	10.405	3	1.9322E-13	2699	DP690-12	188.1	158.46			0.63998	0.67183	16.323	2	0	Median	112600000	65496000	47101000	7445	417	6993	14812;14813	36366;36367;36368;36369;36370	36366		5	9606
KEHVNVVFIGHVDAGK	2	0	Unmodified	1747.937	0.93695282	497;1624	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	1	3	0			1														12.987	12.987	4	0.025203	5955	DP690-3	48.729	36.174			0.92196	0.99312	NaN	1	0	Median	30457000	15428000	15029000	7446	497;1624	6994	14814	36371;36372	36371		2	9606
KEIDVISIPSK	2	0	Unmodified	1227.7075	0.70745338	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	1	11	0											1						14.712	14.712	2	0.00049758	8890	DP690-11	155.33	88.372			0.77582	0.88607	NaN	1	0	Median	119690000	63796000	55898000	7447	1950	6995	14815	36373;36374;36375;36376	36374		4	9606
KEIEVDSSPSVLEILDTAGTEQFASMR	1	1	Oxidation (M)	2967.4383	0.43829733	945;2476	Q9Y3L5;P10114;P61225	RAP2C;RAP2A;RAP2B	Ras-related protein Rap-2c;Ras-related protein Rap-2a;Ras-related protein Rap-2b	no	no	0	1	1	16	0																1	21.549	21.549	3	3.3549E-08	16409	DP690-16	138.23	138.23			0.62334	0.72835	NaN	1	0	Median	2982000	1675800	1306200	7448	2476;945	6996	14816	36377;36378;36379	36378	1462	3	9606
KEIKDILIQYDR	2	1	Unmodified	1532.8562	0.85624288	969	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	2	16	0																1	15.551	15.551	3	0.00093144	9241	DP690-16	96.756	74.896			0.90115	0.99551	NaN	1	0	Median	22318000	11502000	10816000	7449	969	6997	14817	36380;36381;36382	36380		3	9606
KEISEGDEVEVYSR	1	1	Unmodified	1638.7737	0.77369504	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	12	0												2					13.261	13.261	2;3	3.5537E-05	6533	DP690-12	121.42	82.619			0.7971	0.94987	NaN	1	0	Median	88067000	53297000	34770000	7450	829	6998	14818;14819	36383;36384	36383		2	9606
KEKSNMQSER	2	1	Oxidation (M)	1251.5877	0.58774895	1182	Q13127	REST	RE1-silencing transcription factor	yes	yes	0	1	2	6	0						1											12.353	12.353	2	0.023397	4816	DP690-6	64.207	64.207			0.42289	0.45776	NaN	1	0	Median	17786000	13630000	4155700	7451	1182	6999	14820	36385	36385	1833	1	9606
KELVSCSSLR	1	1	Unmodified	1177.6125	0.61250714	209	O60522	TDRD6	Tudor domain-containing protein 6	yes	yes	0	0	1	16	0																1	14.614	14.614	2	0.056938	8021	DP690-16	102.51	31.962			NaN	NaN	NaN	0	0	Median	30845000	30845000	0	7452	209	7000	14821	36386	36386		1	9606
KEMEMLWNK	2	0	2 Oxidation (M)	1239.5628	0.56277975	3	A0A1B0GTZ2			yes	yes	0	2	1	7	0							1										18.919	18.919	2	0.014669	13320	DP690-7	84.568	29.037			NaN	NaN	NaN	0	0	Median	22406000	22406000	0	7453	3	7001	14822	36387;36388	36388	1;2	2	9606
KENDLNAEPNLK	2	0	Unmodified	1383.6994	0.69940789	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	1	9	0									1								11.329	11.329	2	0.018778	3799	DP690-9	76.332	37.578			0.54401	0.65414	NaN	1	0	Median	1931000	1225600	705450	7454	1696	7002	14823	36389;36390	36390		2	9606
KEPEPKDEVLQQK	3	0	Unmodified	1566.8253	0.82533668	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	2	9	0									1								10.354	10.354	3	6.4282E-05	2580	DP690-9	122.52	91.662			0.69278	0.76029	NaN	1	0	Median	22668000	13521000	9147000	7455	1048	7003	14824	36391;36392	36391		2	9606
KEPMEALNTAQGAR	1	1	Oxidation (M)	1530.746	0.7460405	1499	Q6PI78	TMEM65	Transmembrane protein 65	yes	yes	0	1	1	16	0																1	10.426	10.426	3	0.0034983	2920	DP690-16	72.175	51.082			0.72148	0.83822	NaN	1	0	Median	7487600	4960500	2527100	7456	1499	7004	14825	36393	36393	2185	1	9606
KEPVDEDLYPEHYR	1	1	Unmodified	1788.8319	0.83187862	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	1	10	0										1							13.51	13.51	3	0.00023721	7329	DP690-10	103.14	88.627			0.64931	0.77674	NaN	1	0	Median	163710000	108630000	55077000	7457	591	7005	14826	36394;36395	36395		2	9606
KEPVDEDLYPEHYRK	2	1	Unmodified	1916.9268	0.92684164	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	2	10	0										1							12.221	12.221	4	0.029488	5455	DP690-10	76.358	67.538			0.69917	0.79783	NaN	1	0	Median	167230000	100620000	66615000	7458	591	7006	14827	36396	36396		1	9606
KESSEVYFLATQYHGR	1	1	Unmodified	1913.9272	0.92717599	2354	Q9UI43	FTSJ2	rRNA methyltransferase 2, mitochondrial	yes	yes	0	0	1	15	0															1		14.94	14.94	3	0.00011189	8702	DP690-15	97.579	81.944			0.59821	0.69435	NaN	1	0	Median	24252000	14813000	9439300	7459	2354	7007	14828	36397;36398;36399	36397		3	9606
KESYSIYVYK	2	0	Unmodified	1278.6496	0.64960415	399	P06899;Q16778;P33778;P23527;Q8N257;Q6DRA6;Q6DN03	HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC	Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	1	12	4								1								1	13.998	13.998	2	0.0002015	7174	DP690-16	150.81	115.66			1.5535	1.7394	46.131	2	0	Median	748910000	355660000	393250000	7460	399	7008	14829;14830	36400;36401;36402;36403;36404	36400		5	9606
KESYSVYVYK	2	0	Unmodified	1264.634	0.63395408	224	P57053;O60814;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;Q99880	H2BFS;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BL	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L	yes	no	0	0	1	13	3.56								1							1	1	13.263	13.263	2	5.0986E-05	6426	DP690-15	138.08	101.66			1.0042	1.0754	21.207	3	0	Median	2022699999.9999998	1023799999.9999999	998910000	7461	224	7009	14831;14832;14833	36405;36406;36407;36408;36409;36410;36411;36412;36413;36414;36415	36406		11	9606
KETMTMILK	2	0	Oxidation (M)	1109.5825	0.58245256	843	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	1	1	5	0					1												14.818	14.818	2	0.042455	7864	DP690-5	79.713	24.343			NaN	NaN	NaN	0	0	Median	0	0	0	7462	843	7010	14834	36416	36416	1269	1	9606
KEVEETDEMDQVELVDFDPNQER	1	1	Oxidation (M)	2809.2236	0.22361311	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	1	1	13	0													1				17.391	17.391	3	4.1856E-07	12045	DP690-13	125.79	103.55			NaN	NaN	NaN	0	0	Median	15070000	0	15070000	7463	636	7011	14835	36417;36418	36418	876	2	9606
KEVEVVEIIQATIIR	1	1	Unmodified	1739.0193	0.019285464	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	1	3	0			1														21.319	21.319	3	0.0086705	16763	DP690-3	61.127	30.165			0.86148	0.95545	NaN	1	0	Median	2396700	1088900	1307800	7464	1293	7012	14836	36419	36419		1	9606
KFDEGENSLGQNSFSTTNNVCNQNQEIASR	1	1	Unmodified	3387.5022	0.502188	1516	Q6ZWT7	MBOAT2	Lysophospholipid acyltransferase 2	yes	yes	0	0	1	9.5	0.5									1	1							15.35	15.35	3	3.9754E-12	10123	DP690-10	155.5	138.41			NaN	NaN	NaN	0	0	Median	2694500	2694500	0	7465	1516	7013	14837;14838	36420;36421	36420		2	9606
KFDEKENVSNCIQLK	3	0	Unmodified	1850.9196	0.91964777	2386	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	0	0	2	16	0																1	13.282	13.282	3	0.0017336	6283	DP690-16	83.869	62.055			0.89059	1.0954	NaN	1	0	Median	40177000	20186000	19991000	7466	2386	7014	14839	36422	36422		1	9606
KFDILVTTPNR	1	1	Unmodified	1302.7296	0.7295858	2443	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	1	12	0												1					15.363	15.363	3	0.052842	9521	DP690-12	35.523	20.892			0.66234	0.85311	NaN	1	0	Median	24663000	14710000	9953300	7467	2443	7015	14840	36423;36424	36423		2	9606
KFDPMGQQTCSAHPAR	1	1	Oxidation (M)	1845.825	0.82503588	2181	Q9NPE3	NOP10	H/ACA ribonucleoprotein complex subunit 3	yes	yes	0	1	1	16	0																1	10.162	10.162	4	0.02663	2554	DP690-16	69.331	47.517			NaN	NaN	NaN	0	0	Median	1645300	1645300	0	7468	2181	7016	14841	36425	36425	2663	1	9606
KFDQLLAEEK	2	0	Unmodified	1219.6449	0.64485312	668;669;1543	P35579;Q7Z406;P35580	MYH9;MYH14;MYH10	Myosin-9;Myosin-14;Myosin-10	no	no	0	0	1	6	4		1								1							14.029	14.029	2	0.00020566	8090	DP690-10	136.49	73.906			1.0103	1.1171	7.2656	2	0	Median	232370000	115720000	116640000	7469	668;1543;669	7017	14842;14843	36426;36427;36428;36429;36430	36426		5	9606
KFDVNTSAVQVLIEHIGNLDR	1	1	Unmodified	2367.2547	0.25465814	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	8.4	3.26		1							1	2	1						22.051	22.051	3;4	9.9939E-11	19525	DP690-10	158.53	143.01			0.79307	1.0232	19.839	5	0	Linear	115660000	56523000	59140000	7470	1075	7018	14844;14845;14846;14847;14848	36431;36432;36433;36434;36435;36436;36437;36438;36439;36440	36433		10	9606
KFESQDTVALLEAILDGIVDPVDSTLR	1	1	Unmodified	2943.5441	0.54408303	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									2								28.226	28.226	3	3.8819E-05	23285	DP690-9	98.491	76.609			0.69118	0.80164	NaN	1	0	Median	34360000	18964000	15396000	7471	1046	7019	14849;14850	36441;36442;36443;36444	36443		4	9606
KFGDPVVQSDMK	2	0	Oxidation (M)	1365.6599	0.65985126	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	4	0				2													11.512	11.512	2;3	0.00082813	4018	DP690-4	113.67	72.241			1.4157	1.4605	3.0868	2	0	Median	23941000	9635700	14305000	7472	449	7020	14851;14852	36445;36446;36447;36448;36449;36450	36447	515	6	9606
KFGYVDFESAEDLEK	2	0	Unmodified	1775.8254	0.82539626	534	P19338	NCL	Nucleolin	yes	yes	0	0	1	11.5	0.5											1	1					17.854	17.854	3	0.00013344	13493	DP690-11	107.82	94.985			0.9011	1.015	3.8801	2	0	Median	366420000	185670000	180740000	7473	534	7021	14853;14854	36451;36452;36453;36454	36452		4	9606
KFLDGIYVSEK	2	0	Unmodified	1297.6918	0.69180331	647	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	1	15	0															1		15.681	15.681	2	0.00052779	9661	DP690-15	151.79	74.47			0.74989	0.85901	NaN	1	0	Median	92926000	54394000	38532000	7474	647	7022	14855	36455;36456;36457;36458	36458		4	9606
KFMADCPHTIGVEFGTR	1	1	Oxidation (M)	1980.9186	0.91860192	939	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	1	1	15	0															1		14.349	14.349	3	0.0034485	7837	DP690-15	101.9	61.71			NaN	NaN	NaN	0	0	Median	8414300	8414300	0	7475	939	7023	14856	36459	36459	1457	1	9606
KFNALFAQGNYSEAAK	2	0	Unmodified	1757.8737	0.87368386	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	6	4		1								1							15.244	15.244	3	0.00020234	9879	DP690-10	101.04	76.954			1.1492	1.2525	34.165	2	0	Median	260230000	130770000	129460000	7476	1075	7024	14857;14858	36460;36461;36462;36463;36464	36461		5	9606
KFPFCDGAHTK	2	0	Unmodified	1306.6128	0.61284149	2270	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	0	0	1	16	0																1	11.444	11.444	3	0.011979	3995	DP690-16	50.786	32.454			0.51144	0.59031	NaN	1	0	Median	6825300	4036500	2788900	7477	2270	7025	14859	36465	36465		1	9606
KFQGIKHECQANGPEDLNR	2	1	Unmodified	2240.0756	0.075647919	932	P60981	DSTN	Destrin	yes	yes	0	0	2	12	4								1								1	10.609	10.609	4	0.0042923	3136	DP690-16	73.918	59.663			0.70215	0.76329	8.5277	2	0	Median	44680000	27700000	16980000	7478	932	7026	14860;14861	36466;36467;36468	36466		3	9606
KFVADGIFK	2	0	Unmodified	1023.5753	0.57531699	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	15	0															1		15.002	15.002	2	0.011864	8726	DP690-15	97.965	41.155			0.87838	1.0067	NaN	1	0	Median	234770000	124690000	110080000	7479	569	7027	14862	36469;36470;36471;36472	36469		4	9606
KFVIHPESNNLIIIETDHNAYTEATK	2	0	Unmodified	2996.5244	0.52435064	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	1	10.5	0.5										1	1						16.613	16.613	4	0.00043983	11898	DP690-10	92.518	65.209			0.50264	0.58598	NaN	1	0	Median	147550000	127010000	20535000	7480	1329	7028	14863;14864	36473;36474	36473		1	9606
KGADIMYTGTVDCWR	1	1	Oxidation (M)	1787.7971	0.7970898	473	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	1	1	10	0										1							15.189	15.189	3	0.01354	9777	DP690-10	85.28	74.181			1.0368	1.3112	NaN	1	0	Median	52115000	24953000	27162000	7481	473	7029	14865	36475	36475	576	0	9606
KGADSLEDFLYHEGYACTSIHGDR	1	1	Unmodified	2740.2187	0.21874292	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	1	11	0											1						17.933	17.933	5	0.057226	13695	DP690-11	43.64	30.273			NaN	NaN	NaN	0	0	Median	41067000	41067000	0	7482	96	7030	14866	36476	36476		1	9606
KGALETDNSNSSAQVSTVGQTSR	1	1	Unmodified	2336.1204	0.12040908	2416	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	1	10	0										3							11.778	11.778	3	8.3088E-07	4830	DP690-10	135.66	112.06			0.86401	1.0787	NaN	1	0	Median	38930000	19730000	19200000	7483	2416	7031	14867;14868;14869	36477;36478;36479	36477		3	9606
KGDIIQLQR	1	1	Unmodified	1069.6244	0.62439245	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	2	0		1															12.554	12.554	2	0.0055204	4900	DP690-2	109.71	50.797			1.0303	1.0142	NaN	1	0	Median	12563000	5960200	6602700	7484	408	7032	14870	36480;36481;36482;36483	36482		4	9606
KGDVEGSQSQDEGEGSGESER	1	1	Unmodified	2165.8945	0.89449147	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	1	11	0											1						10.319	10.319	3	0.0011217	2543	DP690-11	139.7	117.79			NaN	NaN	NaN	0	0	Median	0	0	0	7485	2424	7033	14871	36484	36484		1	9606
KGEDEDKGPPCGPVNCNEK	3	0	Unmodified	2128.9154	0.91536703	1124	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	2	7	0							2										10.266	10.266	3;4	5.9545E-11	2630	DP690-7	161.1	149.67			0.58542	0.64348	8.4764	2	0	Median	69448000	45010000	24439000	7486	1124	7034	14872;14873	36485;36486;36487;36488;36489	36488		5	9606
KGEFETGFEK	2	0	Unmodified	1170.5557	0.55570376	497;1624	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	1	3.5	0.5			1	1													12.593	12.593	2	0.00025457	5255	DP690-4	141.1	95.079			0.97244	1.0274	27.355	2	0	Median	56887000	23521000	33366000	7487	497;1624	7035	14874;14875	36490;36491;36492;36493;36494;36495	36493		6	9606
KGEITGEVHMPSGK	2	0	Oxidation (M)	1484.7293	0.72932781	250	O75369	FLNB	Filamin-B	yes	yes	0	1	1	6	4		1								1							10.337	10.337	3	0.00014473	2678	DP690-10	106.6	84.274			0.45824	0.49817	NaN	1	0	Median	505010000	260750000	244260000	7488	250	7036	14876;14877	36496;36497;36498	36496	244	2	9606
KGEITGEVHMPSGK	2	0	Unmodified	1468.7344	0.73441319	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										1							11.73	11.73	3	0.00021769	4788	DP690-10	104.09	83.812			0.72829	0.84126	NaN	1	0	Median	221170000	128800000	92371000	7489	250	7036	14878	36499;36500	36499		2	9606
KGEKDIPGLTDTTVPR	2	1	Unmodified	1725.9261	0.92611336	989	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	2	15	0															1		13.528	13.528	3	0.0016298	6885	DP690-15	72.187	38.004			0.72577	0.82948	NaN	1	0	Median	41018000	19501000	21517000	7490	989	7037	14879	36501;36502	36502		2	9606
KGEPVSAEDLGVSGALTVLMK	2	0	Unmodified	2100.1137	0.11365613	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	11	0											1						20.566	20.566	3	0.0001561	17376	DP690-11	99.13	84.109			0.9208	1.0543	NaN	1	0	Median	111080000	58819000	52265000	7491	470	7038	14880	36503;36504	36503		2	9606
KGEPVSAEDLGVSGALTVLMK	2	0	Oxidation (M)	2116.1086	0.10857076	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	1	1	7	4			1								1						19.08	19.08	3	0.00043614	13959	DP690-3	80.293	80.293			0.67715	0.73061	NaN	1	0	Median	25769000	15265000	10504000	7492	470	7038	14881;14882	36505;36506;36507;36508;36509	36507	565	5	9606
KGEQMNSAVLPEMENQVAVSSLSAVIK	2	0	Oxidation (M)	2874.4467	0.44669395	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	1	1	11	0											1						20.237	20.237	3	0.0054378	16947	DP690-11	70.112	45.761			NaN	NaN	NaN	0	0	Median	13299000	0	13299000	7493	736	7039	14883	36510	36510	1087;1088	1	9606
KGEQMNSAVLPEMENQVAVSSLSAVIK	2	0	2 Oxidation (M)	2890.4416	0.44160857	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	2	1	3	0			1														18.523	18.523	3	6.3379E-05	13279	DP690-3	74.277	59.623			0.72642	0.79031	NaN	1	0	Median	10988000	7006700	3981600	7494	736	7039	14884	36511	36511	1087;1088	1	9606
KGESQTDIEITR	1	1	Unmodified	1375.6943	0.69432251	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	1	4	0				1													11.363	11.363	3	0.00046024	3937	DP690-4	80.905	58.859			1.4437	1.6466	NaN	1	0	Median	11622000	4545200	7076700	7495	791	7040	14885	36512;36513;36514	36512		3	9606
KGESQTDIEITREEDFTR	1	2	Unmodified	2153.0237	0.023655153	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	2	8	4				1								1					14.101	14.101	3;4	6.3359E-05	7398	DP690-4	119	87.679			1.2231	1.3199	52.695	2	0	Median	93477000	50705000	42773000	7496	791	7041	14886;14887	36515;36516;36517	36516		3	9606
KGFNPPVLVFVQSIER	1	1	Unmodified	1829.02	0.019954166	2443	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	1	12	0												1					21.433	21.433	3	0.068991	17625	DP690-12	57.703	32.768			NaN	NaN	NaN	0	0	Median	3132500	3132500	0	7497	2443	7042	14888	36518	36518		1	9606
KGGGAASGGGVASSGAGGQQPPQQPR	1	1	Unmodified	2263.1054	0.10536814	1244	Q14106	TOB2	Protein Tob2	yes	yes	0	0	1	14	0														1			10.299	10.299	3	0.002864	2569	DP690-14	55.994	34.293			0.51108	0.6321	NaN	1	0	Median	8095100	4785600	3309500	7498	1244	7043	14889	36519	36519		1	9606
KGGPSPGDVEAIK	2	0	Unmodified	1253.6616	0.66156582	438	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	1	11	4							1								1		11.65	11.65	2	0.0075195	4412	DP690-15	85.672	36.576			0.75297	0.83282	20.466	2	0	Median	28554000	18794000	9760000	7499	438	7044	14890;14891	36520;36521;36522;36523;36524	36521		5	9606
KGGSWIQEINVAEK	2	0	Unmodified	1557.8151	0.81510635	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.5	0.5									2	2							16.328	16.328	2;3	4.8957E-06	10290	DP690-9	103.88	103.88			0.92431	0.92201	21.202	3	0	Plateau	163820000	90999000	72820000	7500	1046	7045	14892;14893;14894;14895	36525;36526;36527;36528;36529;36530;36531;36532	36529		8	9606
KGHAVGDIPGVR	1	1	Unmodified	1204.6677	0.66765425	972	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	1	12	4								1								1	10.581	10.581	3	0.00049046	3084	DP690-16	97.779	97.779			0.9548	1.042	12.713	2	0	Median	273760000	138260000	135490000	7501	972	7046	14896;14897	36533;36534;36535;36536;36537	36533		5	9606
KGHNGTIEFTSLDAHK	2	0	Unmodified	1753.8747	0.87474649	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	1	13	0													1				11.717	11.717	4	0.075007	4382	DP690-13	33.313	33.313			0.79998	0.90711	NaN	1	0	Median	29539000	17733000	11806000	7502	1589	7047	14898	36538	36538		0	9606
KGHQFSCVCLHGDR	1	1	Unmodified	1699.7671	0.76712707	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	1	11	0											1						10.48	10.48	4	0.068273	2687	DP690-11	39.629	24.633			0.65795	0.78778	NaN	1	0	Median	71137000	43931000	27205000	7503	1768	7048	14899	36539	36539		0	9606
KGIIRPGTAFELLEAQAATGYVIDPIK	2	1	Unmodified	2870.5906	0.59057971	1319	Q15149	PLEC	Plectin	yes	yes	0	0	2	9	0									1								21.072	21.072	4	0.027081	16175	DP690-9	47.577	32.493			0.49219	0.52662	NaN	1	0	Median	7674500	4178800	3495700	7504	1319	7049	14900	36540	36540		1	9606
KGLFPFTHVK	2	0	Unmodified	1172.6706	0.67061436	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	1	6	0						2											13.933	13.933	2;3	0.00011935	6734	DP690-6	115.57	96.902			0.6559	0.67805	15.366	2	0	Median	55150000	32153000	22997000	7505	753	7050	14901;14902	36541;36542;36543;36544;36545	36541		5	9606
KGLIAAICAGPTALLAHEIGFGSK	2	0	Unmodified	2394.3093	0.30933625	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	1	7	0							1										20.764	20.764	4	0.071811	15513	DP690-7	32.146	32.146			1.1498	1.2293	NaN	1	0	Median	4849500	2665000	2184600	7506	1939	7051	14903	36546	36546		0	9606
KGLTPSQIGVILR	1	1	Unmodified	1380.8453	0.84528426	975	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	13.3	3.77								1								2	16.505	16.505	2;3	5.5513E-05	9726	DP690-8	134.56	63.386			0.85703	0.92191	5.3623	3	0	Plateau	88625000	47757000	40869000	7507	975	7052	14904;14905;14906	36547;36548;36549;36550;36551;36552;36553;36554	36553		8	9606
KGLVGPELHDR	1	1	Unmodified	1219.6673	0.6673199	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0										1							10.625	10.625	3	0.053625	3130	DP690-10	80.69	64.8			0.8217	0.92107	NaN	1	0	Median	428890000	244170000	184720000	7508	1319	7053	14907	36555	36555		0	9606
KGNLVYIIDFGLAK	2	0	Unmodified	1549.8868	0.88681473	783;798	P49674;P48730	CSNK1E;CSNK1D	Casein kinase I isoform epsilon;Casein kinase I isoform delta	no	no	0	0	1	13	0													1				19.991	19.991	3	0.00014083	15424	DP690-13	99.481	82.346			0.94684	1.0778	NaN	1	0	Median	22443000	11692000	10751000	7509	798;783	7054	14908	36556	36556		1	9606
KGPDGLALPNNYCDFCLGDSK	2	0	Unmodified	2340.0515	0.051466583	1789	Q92785	DPF2	Zinc finger protein ubi-d4	yes	yes	0	0	1	13	0													1				18.405	18.405	3	4.5388E-06	13380	DP690-13	126.26	117.89			0.68353	0.76803	NaN	1	0	Median	56213000	34255000	21958000	7510	1789	7055	14909	36557;36558	36557		2	9606
KGQTHTLEDFQR	1	1	Unmodified	1458.7215	0.72154031	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	1	15	0															1		10.725	10.725	3	8.4717E-05	3191	DP690-15	118.61	91.895			1.1374	1.2691	NaN	1	0	Median	84231000	44947000	39285000	7511	1953	7056	14910	36559;36560;36561;36562	36561		4	9606
KGTDIMYTGTLDCWR	1	1	Oxidation (M)	1831.8233	0.82330455	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	1	1	12.6	2.58									1	1				1	2		16.244	16.244	2;3	2.8667E-06	10113	DP690-9	128.06	108.46			0.85888	1.0133	6.3031	5	0	Median	460610000	250850000	209750000	7512	381	7057	14911;14912;14913;14914;14915	36563;36564;36565;36566;36567;36568;36569;36570;36571;36572;36573	36573	404	11	9606
KGTDIMYTGTLDCWR	1	1	Unmodified	1815.8284	0.82838993	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	1	14.3	0.471														2	1		17.437	17.437	3	1.1264E-07	12290	DP690-14	164.41	99.736			0.81911	0.95862	NaN	1	0	Median	175680000	92119000	83564000	7513	381	7057	14916;14917;14918	36574;36575;36576;36577;36578	36575		5	9606
KGTDVPKWISIMTER	2	1	Unmodified	1759.9291	0.92909025	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	2	14	0														2			17.916	17.916	3;4	0.00012291	12826	DP690-14	115.58	94.73			0.69331	0.83448	31.363	2	0	Median	165240000	108630000	56609000	7514	404	7058	14919;14920	36579;36580;36581	36579		3	9606
KGTGIAAQTAGIAAAAR	1	1	Unmodified	1526.8529	0.85288884	1054	P82912	MRPS11	28S ribosomal protein S11, mitochondrial	yes	yes	0	0	1	16	0																1	13.437	13.437	3	0.00050367	6507	DP690-16	87.088	57.107			0.75037	0.81252	NaN	1	0	Median	53959000	28005000	25955000	7515	1054	7059	14921	36582	36582		1	9606
KGTGVVQPLPAAQTVTVSQGSQTEAESAAAK	2	0	Unmodified	3010.5571	0.55710733	1042	P78364	PHC1	Polyhomeotic-like protein 1	yes	yes	0	0	1	11	0											1						14.868	14.868	3	2.4449E-27	9207	DP690-11	173.09	151.18			NaN	NaN	NaN	0	0	Median	21776000	21776000	0	7516	1042	7060	14922	36583	36583		1	9606
KGTVEGFEPADNK	2	0	Unmodified	1390.6729	0.67285879	687	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	1	11.2	3.92								3								2	11.109	11.109	2;3	2.7646E-10	3792	DP690-8	229	145.35			0.72897	0.80638	7.4912	5	0	Median	307300000	174630000	132670000	7517	687	7061	14923;14924;14925;14926;14927	36584;36585;36586;36587;36588;36589;36590;36591;36592;36593;36594;36595;36596;36597	36596		14	9606
KGTVLLADNVICPGAPDFLAHVR	1	1	Unmodified	2462.3104	0.31039888	555	P21964	COMT	Catechol O-methyltransferase	yes	yes	0	0	1	7	0							1										18.932	18.932	4	0.002	13351	DP690-7	58.758	42.459			1.6638	1.7536	NaN	1	0	Median	10273000	4734900	5537700	7518	555	7062	14928	36598	36598		1	9606
KGTVYLTPYR	1	1	Unmodified	1196.6554	0.65535823	1811	Q969T9	WBP2	WW domain-binding protein 2	yes	yes	0	0	1	6	0						1											12.833	12.833	2	0.009935	5442	DP690-6	91.265	67.062			0.75268	0.84353	NaN	1	0	Median	8646400	4876500	3769900	7519	1811	7063	14929	36599;36600	36599		2	9606
KGVAINFVK	2	0	Unmodified	974.5913	0.59130141	696	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	1	13	0													1				13.128	13.128	2	0.0014059	6133	DP690-13	143.89	91.25			0.90594	1.0086	NaN	1	0	Median	107660000	56817000	50839000	7520	696	7064	14930	36601;36602;36603;36604	36603		4	9606
KGVAINMVTEEDKR	2	1	Oxidation (M)	1604.8192	0.81920545	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	1	2	13	0													1				10.509	10.509	4	0.010094	2811	DP690-13	65.472	44.887			1.0649	1.1757	NaN	1	0	Median	32342000	15365000	16977000	7521	927	7065	14931	36605	36605	1433	1	9606
KGVNLPGAAVDLPAVSEK	2	0	Unmodified	1763.9781	0.97814893	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	4	0				1													16.646	16.646	3	0.00044589	10659	DP690-4	86.453	70.331			0.92516	0.96097	NaN	1	0	Median	28267000	13511000	14755000	7522	488	7066	14932	36606;36607;36608;36609	36609		4	9606
KGVNLPGAAVDLPAVSEKDIQDLK	3	0	Unmodified	2476.3537	0.35370348	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	2	4	0				1													18.369	18.369	3	0.053802	12781	DP690-4	69.272	58.434			0.80649	0.82056	NaN	1	0	Median	4458900	2583400	1875400	7523	488	7067	14933	36610	36610		0	9606
KGVSQTGTPVCEEDGDAGLGIR	1	1	Unmodified	2245.0645	0.06447411	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	1	10	0										1							14.133	14.133	3	3.7423E-10	8229	DP690-10	148.52	114.32			0.64929	0.78521	NaN	1	0	Median	139350000	73874000	65475000	7524	1167	7068	14934	36611;36612;36613;36614	36612		4	9606
KHEAFESDLAAHQDR	1	1	Unmodified	1752.818	0.81795989	476;186	P12814;P35609;O43707	ACTN1;ACTN2;ACTN4	Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-4	no	no	0	0	1	11	0											1						10.597	10.597	4	0.0078883	3007	DP690-11	59.884	44.593			0.9012	0.95398	NaN	1	0	Median	414120000	220920000	193200000	7525	476;186	7069	14935	36615;36616;36617	36615		3	9606
KHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNAR	1	2	Unmodified	4542.1688	0.16876285	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	2	11	0											1						20.687	20.687	5	0.0014296	17431	DP690-11	47.506	42.285			0.71537	0.80002	NaN	1	0	Median	60396000	39227000	21169000	7526	476	7070	14936	36618;36619	36618		2	9606
KHEAIETDIAAYEER	1	1	Unmodified	1773.8533	0.85334235	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							14.227	14.227	4	0.062629	8421	DP690-10	43.557	21.644			NaN	NaN	NaN	0	0	Median	34310000	34310000	0	7527	1080	7071	14937	36620	36620		1	9606
KHFTILDAPGHK	2	0	Unmodified	1362.7408	0.74081919	497;1624	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	1	4	0				1													10.778	10.778	3	0.029154	3315	DP690-4	43.405	29.815			0.81831	0.84006	NaN	1	0	Median	5426200	3112100	2314100	7528	497;1624	7072	14938	36621;36622	36622		2	9606
KHGATLVHCAAGVSR	1	1	Unmodified	1562.81	0.80997817	304	O95147	DUSP14	Dual specificity protein phosphatase 14	yes	yes	0	0	1	16	0																1	10.198	10.198	4	0.00085597	2621	DP690-16	103.3	84.627			0.81443	0.94134	NaN	1	0	Median	1710700	775360	935330	7529	304	7073	14939	36623;36624;36625;36626	36625		4	9606
KHIISHLFSQPK	2	0	Unmodified	1433.8143	0.81431849	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	1	10	0										1							11.382	11.382	3	0.071639	4288	DP690-10	36.954	36.954			0.58426	0.74156	NaN	1	0	Median	64485000	37706000	26779000	7530	1156	7074	14940	36627	36627		1	9606
KHLEINPDHPIVETLR	1	1	Unmodified	1910.0374	0.037395144	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	1	7	4			1								1						13.752	13.752	4	1.4644E-07	6989	DP690-3	151.38	113.61			0.85458	0.98315	17.111	2	0	Median	619930000	341100000	278830000	7531	416	7075	14941;14942	36628;36629;36630;36631;36632;36633;36634;36635	36632		8	9606
KHLEINPDHSIIETLR	1	1	Unmodified	1914.0323	0.032309766	409	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	3	0			1														14.662	14.662	4	0.02832	8329	DP690-3	68.329	35.513			NaN	NaN	NaN	0	0	Median	19176000	0	19176000	7532	409	7076	14943	36636	36636		1	9606
KHPEVDVLINFASLR	1	1	Unmodified	1736.9574	0.95735391	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	3	0			2														18.574	18.574	3;4	0.00062051	13407	DP690-3	87.363	71.224			0.96686	1.0723	NaN	1	0	Median	19999000	13327000	6671400	7533	873	7077	14944;14945	36637;36638;36639	36638		3	9606
KHQALQAEIAGHEPR	1	1	Unmodified	1683.8805	0.88050057	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							10.743	10.743	4	0.0083321	3379	DP690-10	58.824	47.132			0.76141	0.90875	NaN	1	0	Median	169380000	95545000	73831000	7534	1236	7078	14946	36640	36640		1	9606
KHSMLFIEASAK	2	0	Oxidation (M)	1376.7122	0.71222118	2175	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	1	1	8	0								1									10.924	10.924	3	0.0012073	3557	DP690-8	85.973	64.423			0.83707	0.97493	NaN	1	0	Median	7070000	3612100	3457900	7535	2175	7079	14947	36641;36642;36643	36642	2659	3	9606
KHSQFIGYPITLYLEK	2	0	Unmodified	1936.0458	0.045834566	416	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	1	3	0			2														18.18	18.18	3;4	0.013058	12792	DP690-3	56.424	37.132			0.85503	0.92511	3.8906	2	0	Median	43560000	23146000	20414000	7536	416	7080	14948;14949	36644;36645;36646	36645		3	9606
KHYEDAQVPLTNHK	2	0	Unmodified	1678.8427	0.84271808	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	1	12	0												1					10.344	10.344	4	4.7252E-06	2565	DP690-12	137.95	93.512			0.81947	0.92903	NaN	1	0	Median	97912000	40751000	57160000	7537	2521	7081	14950	36647;36648	36647		2	9606
KHYYDGTIFHR	1	1	Unmodified	1435.6997	0.69968266	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	1	12	0												1					11.924	11.924	3	0.00019403	4722	DP690-12	97.452	77.345			0.90232	1.1323	NaN	1	0	Median	42243000	21325000	20918000	7538	1200	7082	14951	36649;36650	36650		2	9606
KIAFAITAIK	2	0	Unmodified	1074.6801	0.68011642	973	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	1	12	4								1								1	15.8	15.8	2	0.00019733	9559	DP690-16	154.01	80.751			0.94755	1.0731	9.0054	2	0	Median	198280000	104090000	94191000	7539	973	7083	14952;14953	36651;36652;36653;36654;36655	36652		5	9606
KIDGAEPLTPEETEEKEK	3	0	Unmodified	2042.0055	0.005545473	609	P28370	SMARCA1	Probable global transcription activator SNF2L1	yes	yes	0	0	2	11	0											1						11.895	11.895	3	0.00017448	4814	DP690-11	107.15	107.15			0.37158	0.40249	NaN	1	0	Median	36595000	24493000	12103000	7540	609	7084	14954	36656;36657	36656		2	9606
KIDKYTEVLK	3	0	Unmodified	1235.7125	0.71253876	705	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	2	15	0															1		11.761	11.761	3	0.00035934	4469	DP690-15	112.85	88.756			0.9697	1.0563	NaN	1	0	Median	110140000	54811000	55330000	7541	705	7085	14955	36658;36659;36660;36661	36660		4	9606
KIEDLEKEVVR	2	1	Unmodified	1356.7613	0.76127986	1880	Q96IZ0	PAWR	PRKC apoptosis WT1 regulator protein	yes	yes	0	0	2	14	0														1			14.025	14.025	3	5.8974E-05	7536	DP690-14	134.13	104.6			0.9247	1.113	NaN	1	0	Median	81622000	41620000	40002000	7542	1880	7086	14956	36662;36663	36662		2	9606
KIEEIKDFLLTAR	2	1	Unmodified	1574.9032	0.90319307	1018	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	2	12	4								1								1	17.434	17.434	3	1.9195E-05	11735	DP690-16	165.51	154.85			0.87826	0.95473	7.7539	2	0	Median	154540000	82404000	72141000	7543	1018	7087	14957;14958	36664;36665;36666;36667;36668;36669;36670	36668		7	9606
KIEEQLTLEK	2	0	Unmodified	1229.6867	0.68671794	628	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	1	6	0						1											12.982	12.982	2	0.00063959	5663	DP690-6	134.57	71.381			0.6907	0.71403	NaN	1	0	Median	17538000	10231000	7306800	7544	628	7088	14959	36671;36672	36671		2	9606
KIEFSLPDLEGR	1	1	Unmodified	1402.7456	0.7456298	676	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	1	5	0					1												18.505	18.505	3	0.053789	12520	DP690-5	63.966	22.282			NaN	NaN	NaN	0	0	Median	6279800	6279800	0	7545	676	7089	14960	36673	36673		1	9606
KIEFVVVGPEAPLAAGIVGNLR	1	1	Unmodified	2248.2943	0.29433811	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	3	0			1														21.324	21.324	3	0.00022213	16743	DP690-3	96.633	90.205			0.89367	0.99115	NaN	1	0	Median	13077000	6646800	6429800	7546	559	7090	14961	36674;36675;36676	36674		3	9606
KIEISTIASNYHLEVNPSDAGNSDR	1	1	Unmodified	2729.3257	0.32565083	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	1	14	0														1			17.059	17.059	4	0.00012337	11744	DP690-14	101.2	78.441			0.77895	0.87443	NaN	1	0	Median	201550000	102480000	99074000	7547	712	7091	14962	36677;36678;36679;36680	36679		4	9606
KIEQVDKEDEITEK	3	0	Unmodified	1702.8625	0.86251005	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	2	12	0												1					10.694	10.694	3	5.5684E-10	3118	DP690-12	210.07	111.7			0.94724	1.026	NaN	1	0	Median	189300000	90717000	98583000	7548	2450	7092	14963	36681;36682	36681		2	9606
KIFEYETQR	1	1	Unmodified	1212.6139	0.61388734	817	P50402	EMD	Emerin	yes	yes	0	0	1	14	0														1			12.343	12.343	2	0.013026	5124	DP690-14	95.815	76.029			0.5965	0.71058	NaN	1	0	Median	85039000	52656000	32383000	7549	817	7093	14964	36683;36684;36685	36685		3	9606
KIGDEYFTFITDCKDPK	3	0	Unmodified	2075.9874	0.98739299	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	2	4	0				1													17.444	17.444	3	0.00013471	11702	DP690-4	111.77	93.614			1.2401	1.2617	NaN	1	0	Median	16676000	6850600	9825000	7550	791	7094	14965	36686;36687;36688	36687		3	9606
KIGDTSVSYK	2	0	Unmodified	1096.5764	0.57643921	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	12	0												1					10.76	10.76	2	0.0018341	3210	DP690-12	109.79	68.137			0.90498	1.0139	NaN	1	0	Median	163470000	96192000	67277000	7551	544	7095	14966	36689	36689		1	9606
KIGYNPDTVAFVPISGWNGDNMLEPSANMPWFK	2	0	Oxidation (M)	3710.7538	0.753775	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	13	0													1				22.41	22.41	3	1.4842E-05	18350	DP690-13	64.508	64.508			0.54537	0.6239	NaN	1	0	Median	8194800	5178700	3016100	7552	1031	7096	14967	36690;36691;36692	36690	1563	3	9606
KIGYNPDTVAFVPISGWNGDNMLEPSANMPWFK	2	0	2 Oxidation (M)	3726.7487	0.74868963	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	2	1	5	0					1												21.514	21.514	3	0.054547	16307	DP690-5	40.458	24.962			NaN	NaN	NaN	0	0	Median	6265600	6265600	0	7553	1031	7096	14968	36693	36693	1563	1	9606
KIGYNPDTVAFVPISGWNGDNMLEPSANMPWFK	2	0	Unmodified	3694.7589	0.75886038	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	5	0					1												23.18	23.18	3	0.01207	18265	DP690-5	53.987	33.76			NaN	NaN	NaN	0	0	Median	4038800	4038800	0	7554	1031	7096	14969	36694;36695	36694		2	9606
KIHTEPQLSAALEYVR	1	1	Unmodified	1853.9999	0.99994701	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	1	3	0			1														16.068	16.068	3	0.027962	10089	DP690-3	50.079	37.561			0.96255	1.0675	NaN	1	0	Median	10001000	5634800	4366300	7555	770	7097	14970	36696	36696		1	9606
KIIDFLSALEGFK	2	0	Unmodified	1479.8337	0.83371653	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	1	10	0										1							22.85	22.85	3	0.038214	20603	DP690-10	49.216	34.117			0.33683	0.38499	NaN	1	0	Median	3376700	2482300	894350	7556	858	7098	14971	36697	36697		1	9606
KIIVDTYGGWGAHGGGAFSGK	2	0	Unmodified	2077.0381	0.038123426	634	P31153;Q00266	MAT2A;MAT1A	S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1	yes	no	0	0	1	5	0					1												15.393	15.393	3	3.4822E-05	8499	DP690-5	117.03	85.616			0.87816	0.85669	NaN	1	0	Median	45952000	23043000	22909000	7557	634	7099	14972	36698;36699;36700;36701	36698		4	9606
KILAAIIMK	2	0	Unmodified	999.65146	0.65145883	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	11	0											1						15.055	15.055	2	0.0053141	9461	DP690-11	110.12	63.456			0.78891	0.88329	NaN	1	0	Median	214420000	119800000	94628000	7558	897	7100	14973	36702;36703	36703		2	9606
KILAAQGQLSAQGGAQPSVEAPAAPRPTATQLTR	1	2	Unmodified	3383.8273	0.82734937	2140	Q9H936	SLC25A22	Mitochondrial glutamate carrier 1	yes	yes	0	0	2	14	0														1			14.707	14.707	4	0.00016493	8507	DP690-14	84.665	67.517			NaN	NaN	NaN	0	0	Median	30206000	30206000	0	7559	2140	7101	14974	36704;36705;36706	36704		3	9606
KILAQDVAQLK	2	0	Unmodified	1225.7394	0.73942221	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	1	10	0										1							13.679	13.679	2	0.024939	7609	DP690-10	75.652	44.966			0.89767	1.1087	NaN	1	0	Median	92158000	44030000	48128000	7560	311	7102	14975	36707	36707		1	9606
KILATAGWDHR	1	1	Unmodified	1266.6833	0.68330431	2047	Q9BYB4	GNB1L	Guanine nucleotide-binding protein subunit beta-like protein 1	yes	yes	0	0	1	6	0						1											11.928	11.928	3	0.036033	4564	DP690-6	51.252	23.771			0.56953	0.63828	NaN	1	0	Median	10860000	6059400	4800400	7561	2047	7103	14976	36708	36708		1	9606
KILDSVGIEADDDRLNK	2	1	Unmodified	1899.9902	0.99017018	384	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	2	12	4								1								1	14.614	14.614	3	7.3363E-18	8076	DP690-16	213.71	175.57			0.87981	0.95642	3.9729	2	0	Median	87287000	46447000	40840000	7562	384	7104	14977;14978	36709;36710;36711	36709		3	9606
KILQDGGLQVVEK	2	0	Unmodified	1425.8191	0.81912909	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	1	4	0				2													14.035	14.035	2;3	5.9558E-08	7231	DP690-4	222.2	137.38			1.4832	1.543	21.698	2	0	Median	70563000	27985000	42578000	7563	167	7105	14979;14980	36712;36713;36714;36715;36716	36714		5	9606
KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQK	2	0	Unmodified	3337.699	0.69897774	898	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	1	12	0												1					20.693	20.693	4	0.076936	16550	DP690-12	15.162	8.9822			NaN	NaN	NaN	0	0	Median	51512000	3392000	48120000	7564	898	7106	14981	36717;36718	36718		2	9606
KINPICNDHYR	1	1	Unmodified	1428.6932	0.69321707	1888	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	1	6	0						1											10.435	10.435	3	0.05363	2868	DP690-6	44.564	25.987			0.79146	0.887	NaN	1	0	Median	7987900	4052700	3935300	7565	1888	7107	14982	36719	36719		1	9606
KINQLPEAER	1	1	Unmodified	1196.6513	0.65133548	2081	Q9H061	TMEM126A	Transmembrane protein 126A	yes	yes	0	0	1	16	0																1	10.645	10.645	2	0.00019214	3189	DP690-16	157.99	110.12			0.75121	0.83026	NaN	1	0	Median	30369000	17118000	13252000	7566	2081	7108	14983	36720	36720		1	9606
KIPDTVLEK	2	0	Unmodified	1041.607	0.60701105	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								12.3	12.3	2	0.062087	4965	DP690-9	74.165	31.769			0.72148	0.81383	NaN	1	0	Median	122810000	71683000	51124000	7567	1046	7109	14984	36721;36722	36722		2	9606
KIPNPDFFEDLEPFR	1	1	Unmodified	1862.9203	0.9202997	605	P27824	CANX	Calnexin	yes	yes	0	0	1	3	0			1														21.086	21.086	3	0.00030485	16441	DP690-3	82.007	60.753			0.90825	1.0073	NaN	1	0	Median	5076700	3055300	2021500	7568	605	7110	14985	36723;36724	36724		2	9606
KIPSVEDSLGEGSR	1	1	Unmodified	1472.7471	0.74708636	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	1	10	0										1							14.072	14.072	3	0.0015114	8147	DP690-10	108.36	69.911			NaN	NaN	NaN	0	0	Median	92582000	0	92582000	7569	2065	7111	14986	36725;36726	36725		2	9606
KIQALQQQADEAEDR	1	1	Unmodified	1741.8595	0.85949036	1028	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	1	12.8	3.34							1							1	2		12.246	12.246	2;3	2.2708E-15	4978	DP690-15	282.89	227.54			0.84911	0.91611	8.2151	4	0	Median	318170000	166490000	151670000	7570	1028	7112	14987;14988;14989;14990	36727;36728;36729;36730;36731;36732;36733;36734;36735;36736;36737;36738;36739	36730		13	9606
KIQELFHVEPGLQR	1	1	Unmodified	1692.9311	0.93113916	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	1	11	0											1						15.205	15.205	3	0.00013294	9729	DP690-11	108.23	88.413			0.39817	0.43566	NaN	1	0	Median	258140000	155100000	103050000	7571	1932	7113	14991	36740;36741	36740		2	9606
KIQHLEQLLESITESENK	2	0	Unmodified	2138.1219	0.12191263	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	1	10	0										1							19.143	19.143	4	0.042716	15563	DP690-10	80.545	43.952			NaN	NaN	NaN	0	0	Median	18272000	18272000	0	7572	1762	7114	14992	36742	36742		1	9606
KISELDAFLKEPALNEANLSNLK	3	0	Unmodified	2556.3799	0.37991824	1124	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	2	7	0							2										19.524	19.524	3;4	1.4546E-05	13994	DP690-7	126.32	126.32			0.71302	0.78373	1.603	2	0	Median	186760000	108890000	77864000	7573	1124	7115	14993;14994	36743;36744;36745;36746;36747	36745		5	9606
KISENSYSLDDLEIGPGQLSSSTFDSEK	2	0	Unmodified	3045.4302	0.43023506	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	11	0											1						19.634	19.634	3	0.00017378	16025	DP690-11	67.47	67.47			0.70404	0.84453	NaN	1	0	Median	28402000	14395000	14007000	7574	2340	7116	14995	36748	36748		1	9606
KISPFEHQTYCQR	1	1	Unmodified	1692.8042	0.80422409	610;600	P27361;P28482	MAPK3;MAPK1	Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 1	no	no	0	0	1	6	0						1											11.297	11.297	3	3.6125E-05	3744	DP690-6	122.46	97.901			0.83664	0.93762	NaN	1	0	Median	13322000	7008000	6313700	7575	600;610	7117	14996	36749;36750;36751;36752;36753	36749		5	9606
KISSIQSIVPALEIANAHR	1	1	Unmodified	2046.1586	0.15857291	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	4	0				1													17.966	17.966	3	0.00068064	12293	DP690-4	78.088	78.088			1.2064	1.3759	NaN	1	0	Median	11352000	5028900	6323300	7576	461	7118	14997	36754;36755;36756	36754		3	9606
KITEAIGIISK	2	0	Unmodified	1171.7176	0.71762413	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	1	3	0			1														14.319	14.319	2	0.021694	7716	DP690-3	78.548	51.067			1.291	1.4011	NaN	1	0	Median	14084000	5313000	8770600	7577	1311	7119	14998	36757	36757		1	9606
KITIADCGQLE	1	0	Unmodified	1246.6227	0.62273747	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	1	10.7	3.77								2								1	15.017	15.017	1;2	0.00038674	8576	DP690-16	122.96	46.741			0.81509	0.87926	2.6377	3	0	Plateau	356430000	190430000	166000000	7578	1008	7120	14999;15000;15001	36758;36759;36760;36761;36762;36763;36764;36765;36766	36759		9	9606
KITIGQAPTEK	2	0	Unmodified	1184.6765	0.6764876	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	7.67	3.4			1						1		1						10.849	10.849	2	4.7312E-06	3434	DP690-11	217.02	168.45			0.82995	0.90589	5.2557	3	0	Plateau	614580000	333150000	281430000	7579	470	7121	15002;15003;15004	36767;36768;36769;36770;36771;36772;36773;36774;36775	36769		9	9606
KIVDQIRPDR	1	2	Unmodified	1238.7095	0.70951906	517;1793	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	2	10	3.54				1							1	1	1				10.545	10.545	3	0.021939	2842	DP690-13	66.621	40.579			0.73881	0.77305	5.6586	4	0	Median	4624300000	2645600000	1978799999.9999998	7580	1793;517	7122	15005;15006;15007;15008	36776;36777;36778;36779;36780;36781	36779		6	9606
KIWCFGPDGTGPNILTDITK	2	0	Unmodified	2232.1249	0.12488952	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	11	0											1						20.721	20.721	3	0.006931	17554	DP690-11	56.684	33.584			0.92349	1.0489	NaN	1	0	Median	140860000	72852000	68005000	7581	483	7123	15009	36782;36783;36784	36782		3	9606
KIYAVEASTMAQHAEVLVK	2	0	Oxidation (M)	2103.1034	0.1034258	1585	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	1	1	4	0				1													14.021	14.021	3	0.00062951	7256	DP690-4	76.761	47.487			1.4184	1.4637	NaN	1	0	Median	11277000	4765500	6511500	7582	1585	7124	15010	36785;36786;36787;36788	36786	2247	4	9606
KIYSTLAGTR	1	1	Unmodified	1108.6241	0.6240581	2359;274	O75746;Q9UJS0	SLC25A12;SLC25A13	Calcium-binding mitochondrial carrier protein Aralar1;Calcium-binding mitochondrial carrier protein Aralar2	no	no	0	0	1	12	0												1					11.199	11.199	2	0.0015697	3942	DP690-12	112.3	81.978			0.82347	0.9366	NaN	1	0	Median	146290000	81808000	64483000	7583	274;2359	7125	15011	36789;36790;36791;36792	36792		4	9606
KKDQVTAQEIFQDNHEDGPTAK	3	0	Unmodified	2498.2037	0.20374478	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	2	11	0											1						12.869	12.869	4	0.00091768	6239	DP690-11	93.729	93.729			0.70855	0.76748	NaN	1	0	Median	135220000	77722000	57501000	7584	480	7126	15012	36793;36794	36794		2	9606
KKELEEEVNNFQK	3	0	Unmodified	1633.8312	0.83115034	2231	Q9NVA2	SEPT11	Septin-11	yes	yes	0	0	2	13	0													1				12.013	12.013	3	0.0001053	4691	DP690-13	118.76	83.037			0.85367	0.89424	NaN	1	0	Median	74824000	41590000	33234000	7585	2231	7127	15013	36795	36795		1	9606
KKELEEIVQPIISK	3	0	Unmodified	1652.9713	0.97127264	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	2	4	0				1													15.178	15.178	3	4.0681E-05	8781	DP690-4	148.85	135.11			1.398	1.4224	NaN	1	0	Median	72029000	30408000	41621000	7586	462	7128	15014	36796;36797;36798;36799	36799		4	9606
KKEVPAVPETLK	3	0	Unmodified	1337.7919	0.79185171	525	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	2	15	0															1		11.102	11.102	3	0.034625	3650	DP690-15	56.956	45.318			0.81437	0.88713	NaN	1	0	Median	12896000	6928000	5967600	7587	525	7129	15015	36800	36800		1	9606
KKPAGPSVSELIVQAASSSK	3	0	Unmodified	1983.1001	0.10005498	1094	Q02539	HIST1H1A	Histone H1.1	yes	yes	0	0	2	14	0														1			16.137	16.137	4	0.00043066	10416	DP690-14	101.61	93.014			0.76098	0.78051	NaN	1	0	Median	86064000	53023000	33041000	7588	1094	7130	15016	36801;36802;36803;36804	36803		4	9606
KKVEAQLQELQVK	3	0	Unmodified	1539.8984	0.89844205	668	P35579	MYH9	Myosin-9	yes	yes	0	0	2	6	4		1								1							12.452	12.452	3	0.00066081	4672	DP690-2	99.669	99.669			0.88873	0.95005	33.982	2	0	Median	249370000	139940000	109430000	7589	668	7131	15017;15018	36805;36806;36807	36806		3	9606
KKWDLSELPK	3	0	Unmodified	1242.6972	0.69722304	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	2	11	0											1						14.273	14.273	3	0.0016944	8324	DP690-11	77.288	37.439			0.61936	0.67087	NaN	1	0	Median	145710000	86614000	59095000	7590	1793	7132	15019	36808;36809	36808		2	9606
KLAAVTYNGVDNNK	2	0	Unmodified	1505.7838	0.78380622	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	1	13	0													2				11.848	11.848	2;3	4.3673E-05	4520	DP690-13	128.36	102.7			0.70805	0.8011	4.9517	2	0	Median	50752000	24156000	26596000	7591	1351	7133	15020;15021	36810;36811;36812;36813;36814;36815	36815		6	9606
KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMER	1	1	Unmodified	3517.7122	0.71224454	1032;1521;1977	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	13	0													1				22.374	22.374	4	1.6969E-05	18333	DP690-13	62.594	48.112			1.0549	1.2886	NaN	1	0	Median	13941000	7136900	6804600	7592	1032;1521;1977	7134	15022	36816;36817	36816		2	9606
KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMER	1	1	Oxidation (M)	3533.7072	0.70715916	1032;1521;1977	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	1	5	0					1												21.873	21.873	4	1.63E-08	16654	DP690-5	106.76	96.756			1.1434	1.2258	NaN	1	0	Median	114580000	52964000	61617000	7593	1032;1521;1977	7134	15023	36818;36819;36820	36820	1571	3	9606
KLAGANPAVITCDELLLGHEK	2	0	Unmodified	2248.1886	0.18855241	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									2								16.787	16.787	3;4	1.624E-05	10853	DP690-9	121.82	100.01			0.69589	0.81846	1.9879	2	0	Median	53140000	32044000	21097000	7594	1046	7135	15024;15025	36821;36822;36823;36824;36825;36826;36827	36824		7	9606
KLASQGDSISSQLGPIHPPPR	1	1	Unmodified	2184.1651	0.16511485	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	1	3	0			1														14.152	14.152	4	0.024845	7639	DP690-3	41.689	41.689			0.57108	0.63337	NaN	1	0	Median	26805000	16459000	10346000	7595	1798	7136	15026	36828;36829	36829		2	9606
KLAVNMVPFPR	1	1	Oxidation (M)	1286.7169	0.71691263	1034;406;2017;370;2010;1217;1389;24	P07437;A6NNZ2;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;P04350;Q3ZCM7;Q9BUF5;CON__ENSEMBL:ENSBTAP00000025008	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A;TUBB8;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-6 chain	no	no	0	1	1	9	4					2								2				15.114	15.114	3	7.7504E-05	8281	DP690-13	119.53	65.331		+	0.84368	0.92303	11.039	4	0	Median	1564099999.9999998	812070000	751980000	7596	406;1034;2017;1217;370;1389;2010;24	7137	15027;15028;15029;15030	36830;36831;36832;36833;36834;36835;36836;36837;36838;36839	36833	24	10	9606
KLAVNMVPFPR	1	1	Unmodified	1270.722	0.72199801	1034;406;2017;370;2010;1217;1389;24	P07437;A6NNZ2;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;P04350;Q3ZCM7;Q9BUF5;CON__ENSEMBL:ENSBTAP00000025008	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A;TUBB8;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-6 chain	no	no	0	0	1	9	4					2								2				16.454	16.454	2;3	4.9334E-05	9774	DP690-5	121.83	86.165		+	0.87927	0.95762	9.9769	4	0	Median	856070000	464210000	391850000	7597	406;1034;2017;1217;370;1389;2010;24	7137	15031;15032;15033;15034	36840;36841;36842;36843;36844;36845;36846;36847;36848;36849;36850;36851;36852;36853;36854;36855	36849		16	9606
KLDALCNIHENIR	1	1	Unmodified	1594.825	0.82495953	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	1	6.5	3.5			1							1							13.589	13.589	3	0.0014353	6726	DP690-3	109.95	74.654			NaN	NaN	NaN	0	0	Median	64539000	47687000	16852000	7598	878	7138	15035;15036	36856;36857;36858	36857		3	9606
KLDDAIEDCTNAVK	2	0	Unmodified	1590.7559	0.75593649	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	1	4	0				3													13.982	13.982	2;3	2.5954E-25	7207	DP690-4	225.72	183			1.0517	1.0895	NaN	1	0	Median	23160000	7828800	15331000	7599	1946	7139	15037;15038;15039	36859;36860;36861;36862	36861		4	9606
KLDEAVAEAHLGK	2	0	Unmodified	1379.7409	0.74087877	571	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	1	5.5	0.5					1	1											12.33	12.33	3	0.0017852	4761	DP690-5	69.045	41.705			0.94671	0.95072	9.8316	2	0	Median	184150000	93089000	91057000	7600	571	7140	15040;15041	36863;36864;36865;36866;36867	36864		5	9606
KLDGFPLLR	1	1	Unmodified	1057.6284	0.6284152	438	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	1	11	4							1								1		17.128	17.128	2	0.0017902	11083	DP690-7	131.03	37.836			0.76703	0.82879	10.621	2	0	Median	191320000	100700000	90615000	7601	438	7141	15042;15043	36868;36869;36870;36871;36872;36873	36873		6	9606
KLDLFANVVHVK	2	0	Unmodified	1381.8082	0.80817048	193	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	1	6	0						1											16.278	16.278	3	0.00026157	9729	DP690-6	106.26	92			0.80907	0.83639	NaN	1	0	Median	8288800	4030900	4257900	7602	193	7142	15044	36874;36875;36876;36877	36877		4	9606
KLDNGGYYITTR	1	1	Unmodified	1399.7096	0.70957864	412	P07947;P06241	YES1;FYN	Tyrosine-protein kinase Yes;Tyrosine-protein kinase Fyn	yes	no	0	0	1	12	0												1					13.269	13.269	3	0.070066	6535	DP690-12	37.525	15.196			0.79896	0.96246	NaN	1	0	Median	70809000	38529000	32280000	7603	412	7143	15045	36878	36878		1	9606
KLDPEIVPEEKDCGDAEGNSK	3	0	Unmodified	2329.0744	0.074370095	162	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	2	12	0												2					12.836	12.836	3;4	1.4319E-10	5991	DP690-12	159.18	159.18			0.70074	0.75899	7.3084	2	0	Median	85614000	47163000	38451000	7604	162	7144	15046;15047	36879;36880;36881;36882;36883;36884	36882		6	9606
KLDPELHLDIK	2	0	Unmodified	1319.7449	0.74490152	1169	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	1	14	0														1			14.682	14.682	3	0.00046018	8445	DP690-14	101.35	57.391			0.75236	0.8398	NaN	1	0	Median	179900000	74137000	105760000	7605	1169	7145	15048	36885;36886	36885		2	9606
KLDPGSEETQTLVR	1	1	Unmodified	1571.8155	0.81550028	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	10.1	4.31					3				2				2			2	13.268	13.268	2;3	1.0495E-24	6303	DP690-13	261.45	173.62			0.8419	0.86088	8.7832	4	0	Median	2243200000	1189100000	1054199999.9999999	7606	598	7146	15049;15050;15051;15052;15053;15054;15055;15056;15057	36887;36888;36889;36890;36891;36892;36893;36894;36895;36896;36897;36898;36899;36900;36901;36902	36889		16	9606
KLDQEMEQLNHHTTTR	1	1	Unmodified	1979.9483	0.94832214	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	1	10	0										1							11.46	11.46	4	0.0063505	4332	DP690-10	60.541	46.992			0.71489	0.8628	NaN	1	0	Median	143600000	79073000	64527000	7607	1794	7147	15058	36903;36904	36903		2	9606
KLDYGQHVVAGTPGR	1	1	Unmodified	1596.8372	0.83723877	696	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	1	13	0													1				11.675	11.675	3	7.0299E-06	4268	DP690-13	153.41	153.41			0.74695	0.81726	NaN	1	0	Median	166750000	98419000	68334000	7608	696	7148	15059	36905;36906;36907;36908	36906		4	9606
KLEAAEDIAYQLSR	1	1	Unmodified	1605.8362	0.83623572	660	P35232	PHB	Prohibitin	yes	yes	0	0	1	15	0															2		17.409	17.409	2;3	7.1329E-06	11888	DP690-15	140.77	93.483			0.64641	0.75541	18.319	2	0	Median	53820000	31790000	22030000	7609	660	7149	15060;15061	36909;36910;36911;36912	36909		4	9606
KLEAELLQIEER	1	1	Unmodified	1469.809	0.80895834	1808	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	1	13	0													1				16.798	16.798	3	0.005353	11256	DP690-13	71.888	26.235			0.65291	0.72257	NaN	1	0	Median	139650000	84543000	55103000	7610	1808	7150	15062	36913	36913		1	9606
KLECLPPEPSPDDPESVK	2	0	Unmodified	2035.9772	0.97722223	1834	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	1	13	0													1				14.374	14.374	3	0.0066141	7941	DP690-13	58.073	58.073			0.57501	0.64464	NaN	1	0	Median	65938000	39399000	26539000	7611	1834	7151	15063	36914	36914		1	9606
KLEEDDQAKDI	2	0	Unmodified	1302.6303	0.63032527	333	O95619	YEATS4	YEATS domain-containing protein 4	yes	yes	0	0	2	15	0															1		11.227	11.227	2	0.00067057	3756	DP690-15	153.1	126.31			0.75697	0.86698	NaN	1	0	Median	67104000	38723000	28381000	7612	333	7152	15064	36915;36916;36917;36918;36919	36916		5	9606
KLEEELEGMR	1	1	Oxidation (M)	1248.602	0.60200203	503	P15924	DSP	Desmoplakin	yes	yes	0	1	1	10	0										1							10.624	10.624	2	0.047712	3207	DP690-10	95.741	34.769			NaN	NaN	NaN	0	0	Median	27860000	27860000	0	7613	503	7153	15065	36920	36920		1	9606
KLEEEQIILEDQNCK	2	0	Unmodified	1887.9248	0.92479273	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	4.67	3.77		2								1							14.803	14.803	2;3	6.1618E-14	7480	DP690-2	245.55	202.26			0.97987	1.1273	11.797	3	0	Plateau	239070000	114340000	124730000	7614	668	7154	15066;15067;15068	36921;36922;36923;36924;36925;36926;36927;36928;36929;36930;36931	36928		11	9606
KLEEHEESLVGR	1	1	Unmodified	1424.726	0.72595699	1294	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	1	9	0									1								10.766	10.766	3	0.055819	3202	DP690-9	42.797	3.6178			1.0258	1.1898	NaN	1	0	Median	9152000	4762400	4389600	7615	1294	7155	15069	36932	36932		1	9606
KLEELIQGAQCVHSPR	1	1	Unmodified	1863.9625	0.96251564	1335	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	1	10	0										1							14.111	14.111	3	0.027729	8267	DP690-10	50.178	31.814			0.81682	1.0339	NaN	1	0	Median	70968000	45212000	25755000	7616	1335	7156	15070	36933;36934;36935	36933		3	9606
KLEENPYDLDAWSILIR	1	1	Unmodified	2074.0735	0.073505879	1175	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	1	11	0											1						21.944	21.944	3	0.00095377	19163	DP690-11	108.96	73.293			NaN	NaN	NaN	0	0	Median	3976600	3976600	0	7617	1175	7157	15071	36936	36936		1	9606
KLEGDSTDLSDQIAELQAQIAELK	2	0	Unmodified	2614.3338	0.3337559	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	7.33	3.77		1								2							23.189	23.189	3	1.1502E-12	20972	DP690-10	156.02	121.52			1.0081	1.1204	7.4065	2	0	Median	30835000	19705000	11130000	7618	668	7158	15072;15073;15074	36937;36938;36939;36940	36938		4	9606
KLEHLITELVHQR	1	1	Unmodified	1614.9206	0.92057447	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	2	0		1															15.345	15.345	4	0.066668	8255	DP690-2	42.317	30.727			1.1655	1.1473	NaN	1	0	Median	5783900	2361300	3422600	7619	1264	7159	15075	36941	36941		0	9606
KLEIGFNGNR	1	1	Unmodified	1146.6146	0.61455605	2173	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	1	9	0									1								13.383	13.383	2	0.02368	6269	DP690-9	82.426	55.733			0.86759	1.0062	NaN	1	0	Median	8269700	4702500	3567200	7620	2173	7160	15076	36942	36942		1	9606
KLEKEEEEGISQESSEEEQ	2	0	Unmodified	2235.9867	0.98666052	510	P17096	HMGA1	High mobility group protein HMG-I/HMG-Y	yes	yes	0	0	2	16	0																2	12.023	12.023	2;3	9.602099999999998E-19	4685	DP690-16	213.02	204.6			0.90511	1.0158	NaN	1	0	Median	57955000	30440000	27515000	7621	510	7161	15077;15078	36943;36944;36945;36946;36947	36946		5	9606
KLEPISNDDLLVVEK	2	0	Unmodified	1710.9404	0.94036644	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	1	10	0										1							16.962	16.962	2	0.010957	12376	DP690-10	76.868	52.172			NaN	NaN	NaN	0	0	Median	32487000	21512000	10974000	7622	2276	7162	15079	36948	36948		1	9606
KLERPPETPTVDPTVK	2	1	Unmodified	1805.9887	0.98871362	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	2	10	0										2							12.483	12.483	3	0.00033976	5774	DP690-10	102.15	67.877			0.59072	0.67408	52.983	2	0	Median	257470000	170650000	86821000	7623	1297	7163	15080;15081	36949;36950;36951	36950		3	9606
KLESVAEEHEILTK	2	0	Unmodified	1624.8672	0.8672015	1718	Q8TCG1	KIAA1524	Protein CIP2A	yes	yes	0	0	1	3	0			1														12.822	12.822	3	0.0072669	5708	DP690-3	91.969	91.969			0.92713	1.0001	NaN	1	0	Median	26379000	13616000	12764000	7624	1718	7164	15082	36952;36953;36954	36953		3	9606
KLEVEANNAFDQYR	1	1	Unmodified	1695.8216	0.82164829	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	1	8.86	3.27						1	4							2			15.037	15.037	2;3	2.6397E-17	8323	DP690-7	247.67	187.27			0.87564	0.96966	11.499	4	0	Median	1061299999.9999999	568000000	493350000	7625	769	7165	15083;15084;15085;15086;15087;15088;15089	36955;36956;36957;36958;36959;36960;36961;36962;36963;36964;36965;36966;36967;36968;36969;36970;36971;36972	36969		18	9606
KLEVNEAELLR	1	1	Unmodified	1312.7351	0.73506511	1482	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	1	13	0													1				15.384	15.384	2	0.021109	9328	DP690-13	79.07	45.326			0.91044	1.1104	NaN	1	0	Median	30808000	14790000	16018000	7626	1482	7166	15090	36973	36973		1	9606
KLFAPQQILQCSPAN	1	0	Unmodified	1713.8872	0.88722543	367	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	0	1	11	4							1								1		18.132	18.132	2	3.3197E-05	12841	DP690-15	133.05	102.84			0.72569	0.81532	28.808	2	0	Median	88837000	51188000	37648000	7627	367	7167	15091;15092	36974;36975;36976;36977;36978;36979;36980;36981	36976		8	9606
KLFDLLDVLEFNQVIIFVK	2	0	Unmodified	2292.3133	0.31334222	63	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	1	13	0													1				26.679	26.679	3	6.7389E-07	22995	DP690-13	108.97	108.97			0.88089	1.0059	NaN	1	0	Median	18004000	9122500	8881300	7628	63	7168	15093	36982	36982		1	9606
KLFIGGLSFETTDDSLREHFEK	2	1	Unmodified	2568.286	0.28601785	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	2	14	0														1			18.35	18.35	4	0.00023769	13443	DP690-14	114.53	97.495			0.80983	0.97472	NaN	1	0	Median	168580000	91543000	77039000	7629	848	7169	15094	36983;36984	36984		2	9606
KLFIGGLSFETTDESLR	1	1	Unmodified	1911.9942	0.99419293	437	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	14	0														1			19.248	19.248	3	2.6263E-08	14691	DP690-14	171.15	136.4			0.894	0.97988	NaN	1	0	Median	285250000	138800000	146450000	7630	437	7170	15095	36985;36986;36987;36988;36989	36987		5	9606
KLFIGGLSFETTEESLR	1	1	Unmodified	1926.0098	0.0098429899	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	14	0														1			19.387	19.387	3	4.6016E-23	14791	DP690-14	193.64	166.52			0.76571	0.86688	NaN	1	0	Median	178200000	104010000	74190000	7631	563	7171	15096	36990;36991;36992;36993	36991		4	9606
KLFVGGIKEDTEEHHLR	2	1	Unmodified	2007.0538	0.05377349	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	2	14	0														1			11.8	11.8	5	0.00071746	4659	DP690-14	85.734	0			0.82248	0.98996	NaN	1	0	Median	135060000	68461000	66603000	7632	563	7172	15097	36994;36995;36996	36996		3	9606
KLGIDDLVHFDFMDPPAPETLMR	1	1	2 Oxidation (M)	2688.2928	0.29275949	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	2	1	3	0			1														20.309	20.309	4	0.049401	15581	DP690-3	46.569	23.92			NaN	NaN	NaN	0	0	Median	4061600	0	4061600	7633	161	7173	15098	36997	36997		1	9606
KLGLCEFPDNDQFSNLEALLIQIGPK	2	0	Unmodified	2958.5161	0.51609414	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	1	11	0											2						24.438	24.438	3	1.1027E-05	22258	DP690-11	107.17	82.723			NaN	NaN	NaN	0	0	Median	7152000	3946800	3205100	7634	736	7174	15099;15100	36998;36999;37000;37001;37002;37003	36999		6	9606
KLGNNCVFAPADVTSEKDVQTALALAK	3	0	Unmodified	2859.48	0.48004299	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	2	15	0															1		18.8	18.8	4	0.0010242	13738	DP690-15	66.075	66.075			0.63003	0.68632	NaN	1	0	Median	18455000	9040900	9413700	7635	1953	7175	15101	37004	37004		1	9606
KLGPTEGRPQLK	2	1	Unmodified	1322.767	0.76703394	145	O15235	MRPS12	28S ribosomal protein S12, mitochondrial	yes	yes	0	0	2	16	0																1	10.3	10.3	3	0.00011301	2716	DP690-16	160.72	124.19			0.66183	0.73113	NaN	1	0	Median	85105000	50204000	34901000	7636	145	7176	15102	37005;37006;37007	37006		3	9606
KLHAVVETLVNHR	1	1	Unmodified	1514.8681	0.86814497	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	1	4	0				2													12.548	12.548	3;4	4.7641E-05	5295	DP690-4	158.34	140.24			1.0668	1.2167	53.787	2	0	Median	10902000	5654000	5248000	7637	1227	7177	15103;15104	37008;37009;37010;37011;37012	37008		5	9606
KLIQDQQEQIQHLK	2	0	Unmodified	1747.9581	0.95808219	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	1	10	0										1							12.4	12.4	3	6.9895E-07	5745	DP690-10	187.63	152.6			0.96022	1.1469	NaN	1	0	Median	142830000	76432000	66402000	7638	1794	7178	15105	37013;37014;37015;37016	37015		4	9606
KLITDEFVK	2	0	Unmodified	1091.6227	0.62266112	2405	Q9UNF1;Q12816	MAGED2;TRO	Melanoma-associated antigen D2;Trophinin	yes	no	0	0	1	4	0				1													14.751	14.751	2	0.0046186	8189	DP690-4	113.62	66.048			0.74663	0.77391	NaN	1	0	Median	21069000	12465000	8604000	7639	2405	7179	15106	37017;37018	37017		2	9606
KLLAEVTLK	2	0	Unmodified	1013.6485	0.64848194	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	1	8	4				1								1					14.05	14.05	2	0.0034021	7599	DP690-12	119.75	34.831			0.95362	1.042	NaN	1	0	Median	505840000	264830000	241000000	7640	2434	7180	15107;15108	37019;37020;37021;37022;37023;37024	37021		6	9606
KLLDLVQQSCNYK	2	0	Unmodified	1607.8341	0.83412723	899	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	1	16	0																1	16.006	16.006	3	2.989E-05	9914	DP690-16	128.21	89.768			0.86644	0.97819	NaN	1	0	Median	36214000	17699000	18516000	7641	899	7181	15109	37025;37026;37027;37028	37027		4	9606
KLLENSTLNSK	2	0	Unmodified	1245.6929	0.69286595	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	1	12	0												1					10.943	10.943	2	3.141E-06	3419	DP690-12	225.93	111.04			0.86842	0.99991	NaN	1	0	Median	50014000	24117000	25896000	7642	2521	7182	15110	37029;37030;37031;37032	37030		4	9606
KLLMMAGIDDCYTSAR	1	1	2 Oxidation (M)	1875.8529	0.85289012	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	2	1	14	0														1			14.092	14.092	3	1.7641E-06	7608	DP690-14	128.74	113.45			1.0476	1.1923	NaN	1	0	Median	164920000	77384000	87539000	7643	502	7183	15111	37033;37034	37033	637;638	2	9606
KLLMMAGIDDCYTSAR	1	1	Oxidation (M)	1859.858	0.85797549	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	1	1	14	0														2			15.711	15.711	3	2.9967E-07	9318	DP690-14	143.28	109.09			0.87851	1.0501	36.383	2	0	Median	161890000	83781000	78111000	7644	502	7183	15112;15113	37035;37036;37037;37038	37036	637;638	4	9606
KLLMMAGIDDCYTSAR	1	1	Unmodified	1843.8631	0.86306087	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	1	14	0														1			17.154	17.154	3	0.033738	11820	DP690-14	79.317	68.209			0.9703	1.1163	NaN	1	0	Median	141020000	70368000	70650000	7645	502	7183	15114	37039	37039		0	9606
KLMHVAYEEFEK	2	0	Oxidation (M)	1538.7439	0.74391524	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	1	9	0									1								12.497	12.497	3	0.0068965	5212	DP690-9	68.463	44.647			0.67158	0.80742	NaN	1	0	Median	10500000	6863900	3635900	7646	1264	7184	15115	37040;37041	37040	1915	2	9606
KLMVEPLQAILIR	1	1	Oxidation (M)	1538.9218	0.92182003	1228	Q13617	CUL2	Cullin-2	yes	yes	0	1	1	3	0			1														18.782	18.782	3	0.0015318	13587	DP690-3	119.39	95.675			NaN	NaN	NaN	0	0	Median	16117000	0	16117000	7647	1228	7185	15116	37042;37043	37043	1878	2	9606
KLNCQVIGASVDSHFCHLAWVNTPK	2	0	Unmodified	2880.4163	0.41633729	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	7	0							1										17	17	4	1.5914E-10	10840	DP690-7	148.4	137.59			0.68426	0.73159	NaN	1	0	Median	174680000	101360000	73321000	7648	1128	7186	15117	37044;37045;37046;37047	37047		4	9606
KLPATTATPDSSKTEMDSR	2	1	Oxidation (M)	2050.9841	0.98409852	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	1	2	13	0													2				10.303	10.303	3;4	0.0008534	2533	DP690-13	80.596	62.13			0.6893	0.76102	12.299	2	0	Median	119540000	68275000	51268000	7649	1823	7187	15118;15119	37048;37049;37050	37048	2403	2	9606
KLPDVPNPLQILYIR	1	1	Unmodified	1778.0454	0.045440635	1697	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	yes	yes	0	0	1	5	0					1												21.946	21.946	3	0.0053592	16803	DP690-5	67.846	64.298			0.6605	0.70809	NaN	1	0	Median	9729300	5768600	3960600	7650	1697	7188	15120	37051;37052	37051		2	9606
KLPEYNPR	1	1	Unmodified	1015.5451	0.5450795	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	1	12	0												1					10.863	10.863	2	0.059566	3252	DP690-12	162.31	96.502			0.72998	0.6934	NaN	1	0	Median	1422700000	832710000	589990000	7651	2298	7189	15121	37053	37053		0	9606
KLPIDVTEGEVISLGLPFGK	2	0	Unmodified	2111.1878	0.18780736	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	1	12	1.87									1			1	1	1			22.024	22.024	3	6.0117E-05	18408	DP690-12	108.45	108.45			0.84808	0.97503	3.8357	2	0	Median	50122000	33722000	16400000	7652	595	7190	15122;15123;15124;15125	37054;37055;37056;37057;37058;37059;37060;37061	37057		8	9606
KLPIQEFHLSR	1	1	Unmodified	1366.7721	0.77211932	700	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	1	13	0													1				14.832	14.832	3	0.00099453	8508	DP690-13	91.123	62.22			0.6915	0.74936	NaN	1	0	Median	193600000	122750000	70854000	7653	700	7191	15126	37062;37063;37064	37062		3	9606
KLPPLPLTLALGAFLNHR	1	1	Unmodified	1970.1829	0.18293717	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	1	14	0														3			22.653	22.653	3;4	0.00047165	19025	DP690-14	115.53	101.53			NaN	NaN	NaN	0	0	Median	37654000	37654000	0	7654	348	7192	15127;15128;15129	37065;37066;37067;37068	37067		4	9606
KLPSQPTTDTSTDKER	2	1	Unmodified	1802.901	0.90102082	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	2	9	0									1								10.25	10.25	3	0.00019923	2478	DP690-9	108.66	84.143			0.60533	0.64768	NaN	1	0	Median	9415200	5688100	3727100	7655	1696	7193	15130	37069	37069		1	9606
KLQATVQELQK	2	0	Unmodified	1284.7402	0.74015049	633	P31146	CORO1A	Coronin-1A	yes	yes	0	0	1	13	0													1				11.878	11.878	2	0.00021359	4542	DP690-13	152.69	45			0.7609	0.86429	NaN	1	0	Median	26142000	14236000	11906000	7656	633	7194	15131	37070;37071	37070		2	9606
KLQEEELLATQVDMR	1	1	Unmodified	1801.9244	0.9243988	1603	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	yes	yes	0	0	1	14	0														1			16.637	16.637	3	0.006297	11189	DP690-14	65.943	35.953			0.72205	0.87863	NaN	1	0	Median	62445000	33528000	28918000	7657	1603	7195	15132	37072	37072		1	9606
KLSGLNAFDIAEELVK	2	0	Unmodified	1745.9564	0.95635086	346	O95983	MBD3	Methyl-CpG-binding domain protein 3	yes	yes	0	0	1	14	0														1			21.54	21.54	3	0.00031225	17579	DP690-14	92.633	66.816			0.69715	0.7842	NaN	1	0	Median	15873000	9294100	6579200	7658	346	7196	15133	37073;37074	37073		2	9606
KLSSQLEEER	1	1	Unmodified	1217.6252	0.62518031	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	1	11	0											1						10.729	10.729	2	0.0017029	3197	DP690-11	110.53	76.147			0.88689	1.1031	NaN	1	0	Median	41250000	18242000	23008000	7659	2302	7197	15134	37075	37075		1	9606
KLSTIALALGVER	1	1	Unmodified	1369.8293	0.82929985	624	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	no	0	0	1	4	0				1													17.292	17.292	3	0.00046723	11532	DP690-4	80.371	70.319			1.9826	2.2612	NaN	1	0	Median	30710000	10323000	20387000	7660	624	7198	15135	37076;37077	37076		2	9606
KLTAGEACAQGLVTEVFPDSTFQK	2	0	Unmodified	2596.2843	0.28430329	259	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	1	14	0														2			19.495	19.495	3	2.3916E-05	14978	DP690-14	109.03	85.818			NaN	NaN	NaN	0	0	Median	31927000	15521000	16407000	7661	259	7199	15136;15137	37078;37079;37080	37078		3	9606
KLTELENELNTK	2	0	Unmodified	1430.7617	0.76167379	895	P55196	MLLT4	Afadin	yes	yes	0	0	1	10	0										1							14.375	14.375	2	0.082521	8634	DP690-10	64.64	42.954			1.0432	1.3056	NaN	1	0	Median	38086000	17348000	20738000	7662	895	7200	15138	37081	37081		1	9606
KLTELGTVDPK	2	0	Unmodified	1199.6762	0.67615325	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	2	0		1															12.58	12.58	2	0.0074444	4847	DP690-2	91.265	29.586			1.2334	1.2805	NaN	1	0	Median	2926200	1264800	1661300	7663	766	7201	15139	37082	37082		1	9606
KLTGGSNWQPK	2	0	Unmodified	1214.6408	0.6407708	1214	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	1	12	0												1					10.751	10.751	2	0.034033	3226	DP690-12	74.173	48.068			0.75533	0.88001	NaN	1	0	Median	30015000	14224000	15792000	7664	1214	7202	15140	37083	37083		1	9606
KLTPITYPQGLAMAK	2	0	Oxidation (M)	1646.9066	0.90656389	1012	P63000	RAC1	Ras-related C3 botulinum toxin substrate 1	yes	yes	0	1	1	15	0															1		15.101	15.101	3	0.0085362	8898	DP690-15	91.812	53.512			NaN	NaN	NaN	0	0	Median	0	0	0	7665	1012	7203	15141	37084	37084	1535	1	9606
KLVEHLHNFILFR	1	1	Unmodified	1664.9515	0.95148067	606	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	1	12	0												1					16.206	16.206	4	0.00051435	10762	DP690-12	92.19	79.35			0.70443	0.90179	NaN	1	0	Median	32848000	19844000	13004000	7666	606	7204	15142	37085;37086	37085		2	9606
KLVESLPQEIK	2	0	Unmodified	1282.7497	0.74965254	862	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	0	1	16	0																1	14.067	14.067	2	0.00016403	7311	DP690-16	128.03	51.356			0.7862	0.88533	NaN	1	0	Median	43937000	24409000	19528000	7667	862	7205	15143	37087;37088;37089	37089		3	9606
KLVIIEGDLER	1	1	Unmodified	1283.7449	0.74490152	398	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	1	14.7	0.471														1	2		15.3	15.3	2;3	2.616E-05	9135	DP690-15	130.56	106.27			0.79916	0.856	12.848	3	0	Plateau	628660000	355670000	272990000	7668	398	7206	15144;15145;15146	37090;37091;37092;37093;37094;37095;37096;37097;37098;37099;37100	37100		11	9606
KLVIIEGDLERTEER	1	2	Unmodified	1798.9789	0.97887721	398	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	2	15	0															1		14.552	14.552	3	1.2749E-05	8090	DP690-15	155.39	19.803			0.79981	0.8032	NaN	1	0	Median	489740000	275100000	214640000	7669	398	7207	15147	37101;37102	37101		2	9606
KLVIIESDLER	1	1	Unmodified	1313.7555	0.7554662	434	P09493	TPM1	Tropomyosin alpha-1 chain	yes	yes	0	0	1	15	0															2		15.32	15.32	2;3	0.017978	9223	DP690-15	81.865	50.493			1.3305	1.5736	NaN	1	0	Median	22531000	5942300	16589000	7670	434	7208	15148;15149	37103;37104;37105	37103		3	9606
KLVIIESDLERAEER	1	2	Unmodified	1798.9789	0.97887721	434	P09493	TPM1	Tropomyosin alpha-1 chain	yes	yes	0	0	2	15	0															1		14.552	14.552	3	0.0013633	8210	DP690-15	86.944	0			0.79981	0.8032	NaN	1	0	Median	489740000	275100000	214640000	7671	434	7209	15150	37106	37106		1	9606
KLVILEGELERAEER	1	2	Unmodified	1782.984	0.98396259	1028	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	2	15	0															1		16.033	16.033	3	0.010177	10101	DP690-15	67.234	41.087			0.8259	0.88381	NaN	1	0	Median	80745000	41500000	39245000	7672	1028	7210	15151	37107;37108	37107		2	9606
KLVPLLLEDGGEAPAALEAALEEK	2	0	Unmodified	2475.3472	0.34722112	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								22.082	22.082	3	0.00029284	17298	DP690-9	85.798	59.381			0.71628	0.86311	NaN	1	0	Median	9620800	5298500	4322300	7673	1264	7211	15152	37109;37110;37111;37112	37110		4	9606
KLYDIDVAK	2	0	Unmodified	1063.5914	0.59136099	988	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	15	0															1		13.623	13.623	2	0.0050188	6878	DP690-15	111.61	66.525			0.93372	1.0698	NaN	1	0	Median	135590000	72670000	62921000	7674	988	7212	15153	37113;37114;37115;37116	37113		4	9606
KLYDSAFHPDTGEK	2	0	Unmodified	1606.7627	0.76273643	1902	Q96NB2	SFXN2	Sideroflexin-2	yes	yes	0	0	1	14	0														1			12.383	12.383	3	0.00046639	5272	DP690-14	92.65	66.526			0.86857	0.9732	NaN	1	0	Median	54662000	27022000	27639000	7675	1902	7213	15154	37117;37118	37118		2	9606
KLYGDADYLEER	1	1	Unmodified	1470.6991	0.69907354	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	1	4	0				2													14.655	14.655	2;3	1.2992E-05	8040	DP690-4	128.21	95.022			0.87549	0.99852	0.79548	2	0	Median	385470000	203590000	181880000	7676	516	7214	15155;15156	37119;37120;37121;37122;37123;37124	37120		6	9606
KLYTGPGLAIHCMQVHK	2	0	Unmodified	1952.0124	0.012442722	184	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	1	12	0												1					13.65	13.65	4	0.0056454	7133	DP690-12	59.634	32.204			0.7576	0.85559	NaN	1	0	Median	115670000	66009000	49664000	7677	184	7215	15157	37125	37125		1	9606
KMALIQMGSVEEAVQALIDLHNHDLGENHHLR	1	1	2 Oxidation (M)	3649.8093	0.80933282	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	2	1	12	0												2					19.335	19.335	6;7	1.1324E-07	14876	DP690-12	95.47	78.669			0.78391	0.88047	0.38595	2	0	Median	349460000	183970000	165490000	7678	595	7216	15158;15159	37126;37127;37128;37129;37130;37131	37126	790;791	6	9606
KMEDSVGCLETAEEVK	2	0	Oxidation (M)	1839.823	0.82302978	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	2	0		1															13.834	13.834	3	0.00025184	6321	DP690-2	93.768	93.768			1.1102	1.1526	NaN	1	0	Median	8776700	3736900	5039800	7679	668	7217	15160	37132;37133;37134	37132	954	3	9606
KMEDSVGCLETAEEVKR	2	1	Oxidation (M)	1995.9241	0.9241408	668	P35579	MYH9	Myosin-9	yes	yes	0	1	2	2	0		1															12.789	12.789	3	1.0549E-08	5138	DP690-2	177.07	154			1.172	1.2051	NaN	1	0	Median	27365000	13134000	14231000	7680	668	7218	15161	37135;37136;37137;37138	37137	954	4	9606
KMQQNIQELEEQLEEEESAR	1	1	Oxidation (M)	2476.1388	0.13876127	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	2	0		1															17.967	17.967	3	4.208E-10	11292	DP690-2	147.25	122.24			1.2312	1.212	NaN	1	0	Median	9608000	4522200	5085700	7681	668	7219	15162	37139;37140;37141;37142	37141	955	4	9606
KMQSTLISAAR	1	1	Unmodified	1204.6598	0.65979168	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	1	11	0											1						11.796	11.796	2	0.0025509	4736	DP690-11	105.2	48.148			0.83899	1.0551	NaN	1	0	Median	35266000	18692000	16574000	7682	736	7220	15163	37143;37144	37144		2	9606
KMTQNDSQLQPIQYQYQDNIK	2	0	Oxidation (M)	2598.2384	0.23841573	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	1	1	10	0										1							15.017	15.017	3	0.0603	9546	DP690-10	63.706	34.892			NaN	NaN	NaN	0	0	Median	0	0	0	7683	311	7221	15164	37145	37145		1	9606
KNAEEFTLR	1	1	Unmodified	1106.572	0.57202253	120	O14933	UBE2L6	Ubiquitin/ISG15-conjugating enzyme E2 L6	yes	yes	0	0	1	8	0								1									12.17	12.17	2	0.024313	4906	DP690-8	88.37	43.034			0.69916	0.81294	NaN	1	0	Median	11532000	6848400	4683300	7684	120	7222	15165	37146;37147	37146		2	9606
KNDMDEPPSGDFGGDEEK	2	0	Unmodified	1965.7898	0.78981539	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	1	10	0										1							13.253	13.253	3	0.0038757	6934	DP690-10	65.287	55.23			0.54508	0.66341	NaN	1	0	Median	27632000	14825000	12806000	7685	1297	7223	15166	37148;37149	37148		2	9606
KNFIQAILTSLIEK	2	0	Unmodified	1616.9501	0.95014327	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	1	10	0										1							24.787	24.787	3	0.00038048	22800	DP690-10	96.135	92.523			1.0556	1.1967	NaN	1	0	Median	2367900	1157800	1210200	7686	2483	7224	15167	37150;37151;37152;37153	37150		4	9606
KNIILEEGKEILVGDVGQTVDDPYATFVK	3	0	Unmodified	3189.6809	0.68091086	572	P23528	CFL1	Cofilin-1	yes	yes	0	0	2	12	4								1								1	21.106	21.106	4	7.2278E-05	15917	DP690-16	84.398	75.541			0.71932	0.84216	15.731	2	0	Median	6552200	3743600	2808600	7687	572	7225	15168;15169	37154;37155;37156;37157	37155		4	9606
KNILEESLCELVAK	2	0	Unmodified	1644.8757	0.87565769	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.6	0.49									2	3							20.668	20.668	2;3	1.6904E-34	17605	DP690-10	252.37	175.44			0.74618	0.89028	2.8742	3	0	Median	236680000	153010000	83672000	7688	1046	7226	15170;15171;15172;15173;15174	37158;37159;37160;37161;37162;37163;37164;37165;37166;37167;37168;37169;37170;37171;37172	37161		15	9606
KNILLTIGSYK	2	0	Unmodified	1248.7442	0.74417324	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	1	2	0		1															16.488	16.488	2	0.00030939	9473	DP690-2	152.04	152.04			1.2784	1.3271	NaN	1	0	Median	18908000	8823900	10084000	7689	602	7227	15175	37173;37174;37175;37176	37174		4	9606
KNLDSTTVAIHDEEIYCK	2	0	Unmodified	2135.0205	0.020484031	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	1	15.3	0.471															2	1	14.084	14.084	3;4	2.7613E-14	7426	DP690-15	194.1	169.4			0.81072	0.92988	6.2338	3	0	Median	1338900000	732630000	606260000	7690	1354	7228	15176;15177;15178	37177;37178;37179;37180;37181;37182;37183;37184;37185;37186;37187;37188	37178		12	9606
KNLDSTTVAVHGEEIYCK	2	0	Unmodified	2062.9994	0.99935466	548	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	1	15	0															1		13.382	13.382	3	0.00021711	6604	DP690-15	93.342	67.977			0.96968	1.1099	NaN	1	0	Median	22181000	10105000	12076000	7691	548	7229	15179	37189;37190	37189		2	9606
KNMMGTMIQKLQR	2	1	3 Oxidation (M)	1625.8052	0.80515206	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	3	2	13	0													1				18.751	18.751	2	0.063591	13701	DP690-13	47.844	23.755			0.97795	1.0797	NaN	1	0	Median	54405000	22979000	31426000	7692	1076	7230	15180	37191	37191		0	9606
KNPAVQAGSIVVLQGGEETQR	1	1	Unmodified	2180.1549	0.1549441	478	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	1	4	0				1													15.112	15.112	3	7.0412E-05	8714	DP690-4	96.848	73.748			0.75691	0.86327	NaN	1	0	Median	15080000	7802000	7277800	7693	478	7231	15181	37192;37193	37192		2	9606
KNPLPPSVGVVDKK	3	0	Unmodified	1476.8664	0.86641364	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	2	13	0													1				11.509	11.509	3	1.0934E-05	3993	DP690-13	127.03	106.29			0.53984	0.56549	NaN	1	0	Median	95565000	64865000	30700000	7694	1678	7232	15182	37194	37194		1	9606
KNTATQETGPENK	2	0	Unmodified	1416.6845	0.68448611	1303	Q14CM0	FRMPD4	FERM and PDZ domain-containing protein 4	yes	yes	0	0	1	12	4								1								1	12.251	12.251	2	0.0013922	4966	DP690-16	107.21	38.579			0.65304	0.7505	8.8329	2	0	Median	47103000	27999000	19104000	7695	1303	7233	15183;15184	37195;37196;37197;37198;37199	37198		5	9606
KPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR	1	1	Oxidation (M)	3286.6809	0.68086806	2188	Q9NQC3	RTN4	Reticulon-4	yes	yes	0	1	1	9	4					1								1				19.51	19.51	3	4.0175E-08	14900	DP690-13	82.581	71.35			0.25763	0.31763	NaN	1	0	Median	25268000	20936000	4331500	7696	2188	7234	15185;15186	37200;37201;37202;37203;37204;37205;37206;37207	37202	2667	8	9606
KPAAVLKPSDWEK	3	0	Unmodified	1467.8086	0.80856441	2088	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	2	11	0											1						12.524	12.524	3	0.019426	5798	DP690-11	63.16	44.564			0.6416	0.69496	NaN	1	0	Median	81865000	46821000	35044000	7697	2088	7235	15187	37208;37209	37208		2	9606
KPAEQAEETAPIEATATKEEEGSS	2	0	Unmodified	2502.1609	0.1609365	1655	Q8N4Q1	CHCHD4	Mitochondrial intermembrane space import and assembly protein 40	yes	yes	0	0	2	16	0																1	13.532	13.532	3	3.1989E-10	6604	DP690-16	153.25	128.05			0.53799	0.614	NaN	1	0	Median	15957000	10347000	5609600	7698	1655	7236	15188	37210;37211	37211		2	9606
KPALELLHYLK	2	0	Unmodified	1323.7915	0.79145778	832	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	1	14	0														1			16.268	16.268	3	0.0084131	10585	DP690-14	69.261	53.321			0.78084	0.87192	NaN	1	0	Median	159420000	82731000	76685000	7699	832	7237	15189	37212;37213	37212		2	9606
KPALVSTVEGGQDPK	2	0	Unmodified	1524.8148	0.814772	1286	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	1	10	0										1							12.181	12.181	3	0.013661	5385	DP690-10	60.631	25.037			NaN	NaN	NaN	0	0	Median	62821000	62821000	0	7700	1286	7238	15190	37214;37215	37214		2	9606
KPANDITSQLEINFGDLGR	1	1	Unmodified	2087.0647	0.064732107	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	13	0													1				20.013	20.013	2	0.0024739	15429	DP690-13	146.78	92.754			NaN	NaN	NaN	0	0	Median	0	0	0	7701	1678	7239	15191	37216	37216		1	9606
KPDHVPISSEDER	1	1	Unmodified	1507.7267	0.72668527	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	1	3	0			2														10.338	10.338	3	2.0849E-05	2546	DP690-3	133.98	110.13			0.7524	0.83447	NaN	1	0	Median	182550000	77941000	104610000	7702	5	7240	15192;15193	37217;37218;37219;37220	37217		4	9606
KPDLPQTNFR	1	1	Unmodified	1214.6408	0.6407708	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	1	12	0												2					12.665	12.665	2;3	0.00074474	5725	DP690-12	123.21	83.207			0.65689	0.81242	10.968	2	0	Median	101630000	61563000	40068000	7703	1200	7241	15194;15195	37221;37222;37223;37224	37221		4	9606
KPDTDSLMPALGFISNR	1	1	Oxidation (M)	1876.9353	0.93529784	2537				yes	yes	0	1	1	15	0															1		14.18	14.18	2	0.042736	7648	DP690-15	59.84	10.483	+		1.1088	1.3093	NaN	1	0	Median	14107000	6811600	7295500	7704	2537	7242	15196	37225	37225	2966	1	9606
KPEDRPNTSEILR	1	2	Unmodified	1553.8162	0.81616898	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	2	14	0														1			11.189	11.189	3	0.0079901	3717	DP690-14	72.531	51.868			0.8255	0.99042	NaN	1	0	Median	11347000	5216700	6129900	7705	538	7243	15197	37226;37227	37226		2	9606
KPEEITPENHVEGTAR	1	1	Unmodified	1805.8908	0.89079049	2528	Q9Y6X8	ZHX2	Zinc fingers and homeoboxes protein 2	yes	yes	0	0	1	11	0											1						10.486	10.486	3	1.8618E-07	2814	DP690-11	147.75	147.75			0.63593	0.74316	NaN	1	0	Median	100660000	56842000	43818000	7706	2528	7244	15198	37228;37229	37228		2	9606
KPESEGYLQEEK	2	0	Unmodified	1435.6831	0.68308912	1400	Q53EZ4	CEP55	Centrosomal protein of 55 kDa	yes	yes	0	0	1	12	0												1					10.743	10.743	2	7.832E-10	3180	DP690-12	257.54	143.03			0.7315	0.84931	NaN	1	0	Median	34865000	20526000	14338000	7707	1400	7245	15199	37230;37231;37232;37233;37234	37231		5	9606
KPFGAILNLVPLAESVVK	2	0	Unmodified	1894.1292	0.12917026	367	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	0	1	7	0							2										22.671	22.671	2;3	4.2011E-06	17691	DP690-7	137.73	107.59			0.63073	0.67435	4.0843	2	0	Median	46425000	29478000	16947000	7708	367	7246	15200;15201	37235;37236;37237;37238;37239;37240	37239		6	9606
KPFPDFVYK	2	0	Unmodified	1139.6015	0.60153174	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	1	4	0				1													15.721	15.721	2	0.04012	9501	DP690-4	109.44	71.163			NaN	NaN	NaN	0	0	Median	8359000	0	8359000	7709	1359	7247	15202	37241	37241		1	9606
KPGGFDISLFYR	1	1	Unmodified	1398.7296	0.7295858	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	9.33	3.77				1								2					18.969	18.969	2;3	0.0018245	13480	DP690-4	64.827	64.827			0.7977	1.0265	90.09	3	0	Median	56182000	29907000	26275000	7710	479	7248	15203;15204;15205	37242;37243;37244;37245	37244		4	9606
KPGGSGLLASPAAAPSPSSSSVSSSSATAPSSVVAATSGGGR	1	1	Unmodified	3641.8133	0.81327503	1951	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	1	10	0										1							16	16	3	7.5468E-05	11043	DP690-10	62.174	39.83			NaN	NaN	NaN	0	0	Median	17056000	17056000	0	7711	1951	7249	15206	37246	37246		1	9606
KPGMFFNPEESELDLTYGNR	1	1	Oxidation (M)	2359.0791	0.079061542	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	1	1	4	0				2													18.17	18.17	2;3	6.0251E-18	12508	DP690-4	197.41	180.22			0.6227	0.71021	27.082	2	0	Median	125200000	71875000	53323000	7712	469	7250	15207;15208	37247;37248;37249;37250;37251	37247	557	5	9606
KPGPPVLSSDPNMLSNEEAGHHFEQMLK	2	0	2 Oxidation (M)	3120.4645	0.46446928	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	2	1	10	0										2							14.757	14.757	4;5	0.000228	9177	DP690-10	59.687	44.288			0.52	0.61089	4.9628	2	0	Median	475060000	306150000	168900000	7713	272	7251	15209;15210	37252;37253;37254;37255;37256;37257	37254	290;291	6	9606
KPGPPVLSSDPNMLSNEEAGHHFEQMLK	2	0	Unmodified	3088.4746	0.47464003	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	1	10	0										1							17.018	17.018	5	5.4695E-05	12456	DP690-10	73.058	50.737			0.65824	0.75337	NaN	1	0	Median	249520000	147500000	102020000	7714	272	7251	15211	37258	37258		1	9606
KPGPPVLSSDPNMLSNEEAGHHFEQMLK	2	0	Oxidation (M)	3104.4696	0.46955465	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	1	1	10	0										1							16.121	16.121	4	0.0013944	11195	DP690-10	71.857	46.53			NaN	NaN	NaN	0	0	Median	34986000	0	34986000	7715	272	7251	15212	37259;37260	37259	290;291	2	9606
KPGQELCTVLDK	2	0	Unmodified	1386.7177	0.71770049	2536				yes	yes	0	0	1	13	0													1				18.01	18.01	2	0.00062093	12728	DP690-13	182.39	108.01	+		0.90321	0.9997	NaN	1	0	Median	162750000	84651000	78103000	7716	2536	7252	15213	37261;37262;37263	37261		3	9606
KPGYHAPVALLNDIPQSTEQYDPFAEHRPPK	2	1	Unmodified	3514.7634	0.76335213	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	2	10	0										2							17.672	17.672	5;6	6.5595E-07	13460	DP690-10	109.14	93.981			0.3418	0.39004	19.367	2	0	Median	308380000	206870000	101510000	7717	263	7253	15214;15215	37264;37265	37264		2	9606
KPHIIIATPGR	1	1	Unmodified	1201.7295	0.72952623	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	1	13	0													3				10.828	10.828	3	0.0012392	3128	DP690-13	119.03	76.69			NaN	NaN	NaN	0	0	Median	106360000	0	106360000	7718	2090	7254	15216;15217;15218	37266;37267;37268;37269	37267		4	9606
KPHTESLELQVR	1	1	Unmodified	1435.7783	0.77832691	1993	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	1	3	0			1														11.558	11.558	3	0.0001265	4104	DP690-3	113.77	98.222			0.87001	0.9649	NaN	1	0	Median	17937000	9363600	8573200	7719	1993	7255	15219	37270;37271;37272	37270		3	9606
KPIDYTVLDDVGHGVK	2	0	Unmodified	1754.9203	0.9202997	1636	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	1	8	4				1								1					15.78	15.78	3	2.7823E-05	9581	DP690-4	122.5	102.25			0.91199	0.94709	NaN	1	0	Median	83985000	14749000	69236000	7720	1636	7256	15220;15221	37273;37274;37275	37275		3	9606
KPITTGGVTYR	1	1	Unmodified	1191.6612	0.66117189	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	6	0						2											10.694	10.694	2;3	1.1652E-15	3086	DP690-6	197.21	132.45			6.8707	7.7	NaN	1	0	Median	15983000	7439300	8544000	7721	1258	7257	15222;15223	37276;37277;37278;37279;37280;37281	37279		6	9606
KPLFHGDSEIDQLFR	1	1	Unmodified	1800.9159	0.91588303	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	10.2	3.77						1	1							2			17.433	17.433	3;4	1.8897E-06	12257	DP690-14	175.27	152.31			0.92598	1.0029	24.506	4	0	Median	428340000	220950000	207390000	7722	391	7258	15224;15225;15226;15227	37282;37283;37284;37285;37286;37287;37288;37289;37290	37286		9	9606
KPLHLLDCIHVLLIR	1	1	Unmodified	1839.0917	0.091679321	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	1	10	0										1							18.885	18.885	4	0.0001081	15193	DP690-10	108.23	104.57			0.81266	0.9899	NaN	1	0	Median	125220000	62677000	62540000	7723	272	7259	15228	37291;37292;37293;37294	37292		4	9606
KPLLESGTLGTK	2	0	Unmodified	1242.7184	0.71835242	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	1	3	0			1														12.765	12.765	2	0.00043708	5549	DP690-3	163.46	92.122			0.91156	0.97613	NaN	1	0	Median	55828000	29551000	26278000	7724	561	7260	15229	37295;37296;37297;37298	37296		4	9606
KPLPDHVSIVEPK	2	0	Unmodified	1457.8242	0.82421447	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	11	4							1								1		12.685	12.685	3	1.1077E-05	5566	DP690-15	177.36	143.39			0.6843	0.75741	9.1446	2	0	Median	170180000	101760000	68412000	7725	569	7261	15230;15231	37299;37300;37301;37302;37303;37304	37301		6	9606
KPLPDHVSIVEPKDEILPTTPISEQK	3	0	Unmodified	2909.575	0.57498923	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	2	15	0															1		16.057	16.057	4	3.7412E-10	10180	DP690-15	147.91	136.91			0.49938	0.54399	NaN	1	0	Median	66486000	42752000	23734000	7726	569	7262	15232	37305;37306;37307	37306		3	9606
KPLTSSSAAPQRPISTQR	1	2	Unmodified	1924.049	0.049022463	1345	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	2	14.5	0.5														2	2		10.315	10.315	3;4	1.3727E-06	2660	DP690-15	135.08	135.08			0.61326	0.68374	3.2547	4	0	Median	341990000	207100000	134900000	7727	1345	7263	15233;15234;15235;15236	37308;37309;37310;37311;37312;37313;37314;37315;37316;37317	37316		10	9606
KPLTTSGFHHSEEGTSSSGSK	2	0	Unmodified	2160.0083	0.00833944	1428	Q5SW79	CEP170	Centrosomal protein of 170 kDa	yes	yes	0	0	1	10	0										1							10.283	10.283	4	0.00033051	2604	DP690-10	85.177	72.2			0.91117	1.0997	NaN	1	0	Median	124540000	68069000	56474000	7728	1428	7264	15237	37318;37319	37318		2	9606
KPMSLASGLVPAAPPK	2	0	Oxidation (M)	1578.8803	0.88034914	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	1	10	0										2							14.204	14.204	2;3	0.020901	8253	DP690-10	51.76	35.661			0.49873	0.58405	15.126	2	0	Median	545000000	367210000	177790000	7729	604	7265	15238;15239	37320;37321;37322;37323	37321	838	4	9606
KPMSLASGLVPAAPPK	2	0	Unmodified	1562.8854	0.88543452	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	10.5	0.5										1	1						15.389	15.389	3	0.00022028	10046	DP690-10	86.539	62.084			0.52124	0.57476	NaN	1	0	Median	443390000	306320000	137070000	7730	604	7265	15240;15241	37324;37325;37326;37327;37328;37329;37330	37327		7	9606
KPNPLANSNTSGYSESK	2	0	Unmodified	1792.8592	0.85915601	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	1	2	0		1															10.788	10.788	3	2.5227E-10	2904	DP690-2	171.15	134.52			0.71747	0.74483	NaN	1	0	Median	8920100	5098700	3821400	7731	1282	7266	15242	37331;37332;37333	37332		3	9606
KPNVGCQQDSEELLK	2	0	Unmodified	1743.8461	0.84614848	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	1	3.33	0.471			2	1													12.569	12.569	2;3	1.4403E-06	5420	DP690-3	188.48	140.64			0.76999	0.82078	1.2774	3	0	Median	104810000	59049000	45763000	7732	5	7267	15243;15244;15245	37334;37335;37336;37337;37338;37339;37340;37341;37342;37343	37341		10	9606
KPPGAQLGFNIR	1	1	Unmodified	1296.7303	0.73025451	1414	Q5EBL8	PDZD11	PDZ domain-containing protein 11	yes	yes	0	0	1	16	0																1	14.568	14.568	3	0.00043893	7986	DP690-16	98.156	72.04			0.77076	0.82983	NaN	1	0	Median	63365000	40716000	22649000	7733	1414	7268	15246	37344;37345;37346	37345		3	9606
KPPKPQLMANYYNK	3	0	Oxidation (M)	1706.8814	0.88141177	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	1	2	10	0										1							10.825	10.825	3	0.048	3427	DP690-10	66.538	26.022			NaN	NaN	NaN	0	0	Median	0	0	0	7734	1252	7269	15247	37347	37347		1	9606
KPPLLNNADSVQAK	2	0	Unmodified	1493.8202	0.82019173	439	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	11	0											3						11.947	11.947	2	0.0097232	4889	DP690-11	168.83	129.52			NaN	NaN	NaN	0	0	Median	0	0	0	7735	439	7270	15248;15249;15250	37348;37349;37350	37348		3	9606
KPPPPSAPVIK	2	0	Unmodified	1129.6859	0.68593008	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	1	13	0													2				10.428	10.428	2;3	0.0010656	2706	DP690-13	123.01	65.834			0.57995	0.65075	NaN	1	0	Median	64066000	40841000	23226000	7736	1823	7271	15251;15252	37351;37352;37353;37354;37355;37356	37355		6	9606
KPPPVPALPSK	2	0	Unmodified	1129.6859	0.68593008	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	1	12	0												2					12.55	12.55	2;3	0.029911	5421	DP690-12	74.841	38.417			0.54611	0.62231	NaN	1	0	Median	83201000	52450000	30750000	7737	1269	7272	15253;15254	37357;37358;37359	37357		3	9606
KPPTDEELKETIK	3	0	Unmodified	1526.8192	0.81918867	674	P35659	DEK	Protein DEK	yes	yes	0	0	2	14.5	1.5													1			1	11.554	11.554	3	2.2801E-05	4204	DP690-13	147.73	115.3			0.5655	0.64189	10.174	2	0	Median	62606000	38309000	24297000	7738	674	7273	15255;15256	37360;37361;37362;37363;37364;37365;37366;37367	37365		8	9606
KPSDSVHITNDDER	1	1	Unmodified	1611.7489	0.74887728	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							10.42	10.42	3	0.00041475	2859	DP690-10	94.461	67.834			0.63137	0.69394	NaN	1	0	Median	573950000	326510000	247440000	7739	13	7274	15257	37368;37369	37368		2	9606
KPSEIQQVNNPELGLSR	1	1	Unmodified	1908.0065	0.0064889465	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	9.88	2.85			1						1	2	2	1	1				14.255	14.255	2;3	2.9637999999999997E-59	8335	DP690-11	398.8	356.47			0.67687	0.76905	12.571	8	0	Median	2084399999.9999998	1187400000	897000000	7740	1758	7275	15258;15259;15260;15261;15262;15263;15264;15265	37370;37371;37372;37373;37374;37375;37376;37377;37378;37379;37380;37381;37382;37383;37384;37385;37386;37387;37388;37389;37390;37391;37392;37393;37394;37395;37396	37385		27	9606
KPSETQELVQQVLSLATQDSDNPDLR	1	1	Unmodified	2910.4571	0.45705894	1013	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	1	11	0											1						23.392	23.392	3	1.1342E-07	20993	DP690-11	141	124.18			2.0477	2.4491	NaN	1	0	Median	13388000	5033100	8354900	7741	1013	7276	15266	37397;37398;37399	37399		3	9606
KPTFMDEEVQSILTK	2	0	Unmodified	1764.8968	0.89678707	1050	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	1	14	0														1			19.029	19.029	3	0.0077886	14390	DP690-14	62.916	43.389			0.49933	0.56035	NaN	1	0	Median	33356000	17639000	15716000	7742	1050	7277	15267	37400;37401	37400		2	9606
KPTSAKPSSTTPR	2	1	Unmodified	1356.7361	0.73612775	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	2	10	0										1							9.7212	9.7212	3	0.011878	2148	DP690-10	60.401	43.189			0.84691	0.96642	NaN	1	0	Median	741900	499760	242140	7743	604	7278	15268	37402	37402		1	9606
KPVEELTEEEK	2	0	Unmodified	1329.6664	0.66637643	2445	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	1	15	0															1		10.805	10.805	2	7.8843E-05	3298	DP690-15	183.85	113.45			0.63727	0.72911	NaN	1	0	Median	9217400	5068000	4149300	7744	2445	7279	15269	37403;37404	37403		2	9606
KPVEELTEEEKYVR	2	1	Unmodified	1747.8992	0.89922991	2445	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	2	15	0															1		13.521	13.521	3	1.048E-05	6792	DP690-15	175.6	134.98			0.52875	0.6043	NaN	1	0	Median	62936000	37613000	25323000	7745	2445	7280	15270	37405;37406	37405		2	9606
KPVEGYDISFLITNFHTEQMYK	2	0	Oxidation (M)	2675.2941	0.2941397	917	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	1	1	16	0																2	19.651	19.651	3;4	0.0001377	14272	DP690-16	102.67	88.253			0.69544	0.79986	2.6597	2	0	Median	18621000	11322000	7299000	7746	917	7281	15271;15272	37407;37408;37409;37410	37407	1411	4	9606
KPVGEVHSQFSTGHANSPCTIIIGK	2	0	Unmodified	2663.349	0.34896923	749	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	10	0										1							13.5	13.5	4	0.024943	7357	DP690-10	38.592	17.855			0.6428	0.79971	NaN	1	0	Median	83755000	47144000	36611000	7747	749	7282	15273	37411	37411		1	9606
KPVIVFVPSR	1	1	Unmodified	1140.7019	0.70191449	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	10	0										1							14.423	14.423	3	0.058889	8714	DP690-10	61.213	40.214			NaN	NaN	NaN	0	0	Median	5546900	0	5546900	7748	269	7283	15274	37412	37412		1	9606
KPVTDCVISVPSFFTDAER	1	1	Unmodified	2167.062	0.061954915	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	1	3	0			1														19.802	19.802	3	4.3699E-05	14895	DP690-3	114.55	95.207			0.81581	0.9048	NaN	1	0	Median	37585000	20960000	16626000	7749	1778	7284	15275	37413;37414;37415	37414		3	9606
KPVTVSPTTPTSPTEGEAS	1	0	Unmodified	1884.9317	0.93165225	2520	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	1	12	0												1					13.12	13.12	2	0.00058932	6375	DP690-12	107.93	78.122			0.62901	0.76189	NaN	1	0	Median	13243000	7692400	5550100	7750	2520	7285	15276	37416;37417	37417		2	9606
KPVVGQCTIER	1	1	Unmodified	1285.6813	0.6812554	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	1	10	0										1							10.624	10.624	3	0.0006885	3187	DP690-10	75.788	54.954			0.60617	0.70797	NaN	1	0	Median	233410000	134980000	98429000	7751	2276	7286	15277	37418;37419	37418		2	9606
KQAEETYENIPGQSK	2	0	Unmodified	1720.8268	0.82679325	82	O00410	IPO5	Importin-5	yes	yes	0	0	1	3	0			3														11.87	11.87	2;3	7.8993E-05	4502	DP690-3	113.67	88.954			0.96122	1.0327	NaN	1	0	Median	42142000	24272000	17871000	7752	82	7287	15278;15279;15280	37420;37421;37422;37423;37424;37425	37421		6	9606
KQALYEYAR	1	1	Unmodified	1140.5928	0.59275797	2516	Q9Y679	AUP1	Ancient ubiquitous protein 1	yes	yes	0	0	1	14	0														1			11.625	11.625	2	0.0099933	4224	DP690-14	101.43	76.593			0.87068	1.0911	NaN	1	0	Median	40737000	21029000	19708000	7753	2516	7288	15281	37426;37427	37426		2	9606
KQDAFYKEQLAR	2	1	Unmodified	1495.7783	0.77832691	2250	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	2	15	0															1		11.493	11.493	3	0.0035019	4067	DP690-15	89.356	89.356			0.74919	0.85625	NaN	1	0	Median	48874000	26509000	22365000	7754	2250	7289	15282	37428;37429;37430;37431	37431		4	9606
KQEAQNEQTSEPSNMDGNSGDADCFQPAVK	2	0	Oxidation (M)	3297.3786	0.37862697	646	P32780	GTF2H1	General transcription factor IIH subunit 1	yes	yes	0	1	1	12	0												1					12.808	12.808	3	4.4717E-07	5947	DP690-12	116.35	102.26			NaN	NaN	NaN	0	0	Median	12237000	12237000	0	7755	646	7290	15283	37432;37433;37434	37432	902	3	9606
KQEELQQLEQQR	1	1	Unmodified	1555.7954	0.79543354	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									2	2							12.805	12.805	2;3	6.6296E-10	6323	DP690-10	214.82	101.2			0.73521	0.85271	34.163	4	0	Median	409890000	274460000	135420000	7756	1319	7291	15284;15285;15286;15287	37435;37436;37437;37438;37439;37440;37441;37442;37443;37444;37445;37446;37447;37448	37436		14	9606
KQELEEICHDLEAR	1	1	Unmodified	1768.8414	0.84139745	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	6	4		1								1							15.354	15.354	3	1.9269E-05	8147	DP690-2	128.85	114.76			0.96007	1.0446	11.376	2	0	Median	186040000	95046000	90992000	7757	668	7292	15288;15289	37449;37450;37451;37452;37453;37454;37455	37453		7	9606
KQELLEALTK	2	0	Unmodified	1171.6812	0.68123863	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	9.33	3.77				1								2					15.004	15.004	2	8.4001E-05	8541	DP690-4	187.16	144.29			1.3637	1.4832	118.2	2	0	Median	119590000	71498000	48089000	7758	479	7293	15290;15291;15292	37456;37457;37458;37459;37460;37461	37460		6	9606
KQELQPGTAYK	2	0	Unmodified	1261.6667	0.6666512	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	1	11	0											1						10.471	10.471	2	4.7312E-06	2801	DP690-11	217.02	160.76			0.65302	0.73729	NaN	1	0	Median	167720000	103690000	64037000	7759	837	7294	15293	37462;37463;37464	37462		3	9606
KQESTVMVLR	1	1	Unmodified	1189.6489	0.64889264	2348	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	1	12	0												1					12.073	12.073	2	0.007356	4882	DP690-12	93.143	58.891			0.66259	0.84161	NaN	1	0	Median	36268000	22123000	14145000	7760	2348	7295	15294	37465;37466	37466		2	9606
KQEVQAWDGEVR	1	1	Unmodified	1443.7106	0.71064128	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	1	3	0			2														12.829	12.829	2;3	9.4808E-05	5767	DP690-3	183.33	140.62			0.82349	0.91331	14.24	2	0	Median	66380000	36128000	30252000	7761	746	7296	15295;15296	37467;37468;37469;37470;37471;37472	37470		6	9606
KQFSVPPAPTRPSCPAVAEIPLR	1	2	Unmodified	2517.3526	0.35259805	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	2	11	0											1						16.012	16.012	4	0.0016645	10875	DP690-11	75.112	52.737			0.60605	0.65878	NaN	1	0	Median	266840000	170880000	95957000	7762	1950	7297	15297	37473;37474	37473		2	9606
KQGAGDSLIAGSAMSK	2	0	Oxidation (M)	1535.7614	0.76135622	448	Q8NHU0;Q5HYN5;Q5DJT8;P0DMV2;P0DMV1;P0DMV0;P0DMU9;P0DMU8;P0DMU7	CT45A3;CT45A1;CT45A2;CT45A9;CT45A8;CT45A7;CT45A10;CT45A5;CT45A6	Cancer/testis antigen family 45 member A3;Cancer/testis antigen family 45 member A1;Cancer/testis antigen family 45 member A2;Cancer/testis antigen family 45 member A9;Cancer/testis antigen family 45 member A8;Cancer/testis antigen family 45 member A7;Cancer/testis antigen family 45 member A10;Cancer/testis antigen family 45 member A5;Cancer/testis antigen family 45 member A6	yes	no	0	1	1	15	0															3		10.659	10.659	3	0.001035	3112	DP690-15	75.877	58.156			0.88128	1.0094	NaN	1	0	Median	79024000	31429000	47595000	7763	448	7298	15298;15299;15300	37475;37476;37477	37475	511	3	9606
KQGGLGPMNIPLVSDPK	2	0	Oxidation (M)	1765.9397	0.93965493	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	1	1	10	3.8							4	2							2	1	15.604	15.604	2;3	9.8249E-05	9093	DP690-15	124.47	93.645			0.67892	0.76928	17.96	8	0	Median	1588899999.9999998	942310000	646620000	7764	1128	7299	15301;15302;15303;15304;15305;15306;15307;15308;15309	37478;37479;37480;37481;37482;37483;37484;37485;37486;37487;37488;37489;37490;37491;37492;37493;37494;37495;37496;37497;37498;37499;37500;37501;37502;37503;37504;37505;37506;37507	37487	1752	30	9606
KQGGLGPMNIPLVSDPK	2	0	Unmodified	1749.9447	0.94474031	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	7	0							1										17.198	17.198	3	0.0067456	11006	DP690-7	59.345	37.811			0.63517	0.6791	NaN	1	0	Median	169440000	100040000	69400000	7765	1128	7299	15310	37508	37508		1	9606
KQGGLGPMNIPLVSDPKR	2	1	Oxidation (M)	1922.0408	0.040765963	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	1	2	9.57	3.46							3	2							2		13.989	13.989	3;4	0.00018773	7277	DP690-15	103.13	68.04			0.70349	0.80402	14.084	7	0	Median	1820799999.9999998	1042599999.9999999	778200000	7766	1128	7300	15311;15312;15313;15314;15315;15316;15317	37509;37510;37511;37512;37513;37514;37515;37516;37517;37518;37519;37520;37521;37522;37523;37524;37525;37526;37527	37516	1752	18	9606
KQGGLGPMNIPLVSDPKR	2	1	Unmodified	1906.0459	0.045851341	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	2	11	4							2								2		15.665	15.665	3;4	0.00033671	9063	DP690-7	96.773	96.773			0.76137	0.81303	15.671	4	0	Median	224530000	128520000	96016000	7767	1128	7300	15318;15319;15320;15321	37528;37529;37530;37531;37532;37533;37534;37535;37536;37537;37538	37537		11	9606
KQISNLQQSISDAEQR	1	1	Unmodified	1843.9388	0.93880331	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	1																14.251	14.251	3	7.9125E-08	5964	DP690-1	140.77	99.216		+	NaN	NaN	NaN	0	0	Median	3613200	3613200	0	7768	369	7301	15322	37539;37540;37541	37539		3	9606
KQITMEELVR	1	1	Oxidation (M)	1261.67	0.67002202	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	9	0									2								11.45	11.45	2;3	0.0037833	3884	DP690-9	76.282	49.575			0.82428	0.95602	5.5608	2	0	Median	34047000	18404000	15642000	7769	1319	7302	15323;15324	37542;37543;37544;37545;37546;37547;37548;37549	37548	2023	8	9606
KQLADETLLK	2	0	Unmodified	1157.6656	0.66558856	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	12	0												1					13.132	13.132	2	0.00042574	6280	DP690-12	128.03	86.586			0.77792	0.87867	NaN	1	0	Median	114940000	60879000	54058000	7770	544	7303	15325	37550;37551;37552;37553	37551		4	9606
KQLLHLAEEK	2	0	Unmodified	1207.6925	0.69247202	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	1	10	0										1							10.836	10.836	3	0.0089576	3471	DP690-10	70.412	56.682			0.94004	1.1862	NaN	1	0	Median	69595000	34032000	35564000	7771	1071	7304	15326	37554;37555;37556	37555		3	9606
KQLQAIEFNK	2	0	Unmodified	1217.6768	0.67682195	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	1	11	0											2						12.765	12.765	2	1.6709E-08	6079	DP690-11	227.99	123.93			NaN	NaN	NaN	0	0	Median	0	0	0	7772	288	7305	15327;15328	37557;37558	37557		2	9606
KQLQDEMLR	1	1	Unmodified	1159.6019	0.60194245	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	12	0												1					12.294	12.294	2	0.060258	5196	DP690-12	131.06	22.601			NaN	NaN	NaN	0	0	Median	0	0	0	7773	359	7306	15329	37559	37559		1	9606
KQMVIDVLHPGK	2	0	Oxidation (M)	1379.7595	0.75950572	994	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	1	12	4								1								1	12.405	12.405	3	0.0003703	5138	DP690-16	100.19	73.56			0.90016	1.0161	4.5348	2	0	Median	239840000	122280000	117560000	7774	994	7307	15330;15331	37560;37561;37562;37563;37564;37565;37566	37561	1518	7	9606
KQNADPQAVTMPATETK	2	0	Oxidation (M)	1844.8938	0.89382695	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	1	1	4	0				1													10.447	10.447	3	5.7113E-08	2734	DP690-4	156	119.37			0.67319	0.70139	NaN	1	0	Median	43389000	25616000	17773000	7775	2405	7308	15332	37567;37568;37569	37567	2828	3	9606
KQNADPQAVTMPATETKK	3	0	Oxidation (M)	1972.9888	0.98878997	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	1	2	4	0				1													10.166	10.166	3	0.015325	2468	DP690-4	82.121	54.85			NaN	NaN	NaN	0	0	Median	0	0	0	7776	2405	7309	15333	37570	37570	2828	1	9606
KQNNFSLAMK	2	0	Oxidation (M)	1195.6019	0.60194245	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	10	0										1							10.704	10.704	2	0.0037656	3274	DP690-10	101.97	56.813			0.78245	0.90122	NaN	1	0	Median	229630000	126650000	102980000	7777	1046	7310	15334	37571;37572	37571	1612	2	9606
KQNNFSLAMK	2	0	Unmodified	1179.607	0.60702783	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.5	0.5									1	1							12.67	12.67	2	0.00034458	6161	DP690-10	134.23	72.536			0.74405	0.87525	0.14279	2	0	Median	186610000	99996000	86611000	7778	1046	7310	15335;15336	37573;37574;37575;37576;37577;37578;37579;37580	37574		8	9606
KQPHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGK	3	0	Unmodified	4407.0078	0.0077859487	1170	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	2	11	0											1						11.887	11.887	5	0.052305	4855	DP690-11	37.93	26.287			NaN	NaN	NaN	0	0	Median	12080000	12080000	0	7779	1170	7311	15337	37581	37581		1	9606
KQQISLATQMVR	1	1	Oxidation (M)	1417.7711	0.77113304	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	1	4	0				1													11.589	11.589	3	0.0020018	4130	DP690-4	77.74	48.273			1.5934	1.8173	NaN	1	0	Median	18590000	6728600	11861000	7780	779	7312	15338	37582;37583;37584	37584	1159	3	9606
KQQQELHLALK	2	0	Unmodified	1334.767	0.76703394	1846	Q96EU6	RRP36	Ribosomal RNA processing protein 36 homolog	yes	yes	0	0	1	15	0															1		11.421	11.421	3	0.0022592	4128	DP690-15	82.494	62.179			0.88703	1.0151	NaN	1	0	Median	14235000	7553900	6681500	7781	1846	7313	15339	37585	37585		1	9606
KQQSIAGSADSKPIDVSR	2	1	Unmodified	1885.9858	0.9857535	1168	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	2	10	4						1								1			10.829	10.829	3;4	1.6624E-09	3212	DP690-14	149.31	128.55			0.78199	0.89259	4.2208	2	0	Median	32108000	17283000	14825000	7782	1168	7314	15340;15341	37586;37587;37588;37589;37590;37591	37586		6	9606
KQTIDNSQGAYQEAFDISK	2	0	Unmodified	2142.0229	0.022926872	599	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	1	7	0							1										15.695	15.695	3	0.0027012	9152	DP690-7	67.579	67.579			0.69267	0.74058	NaN	1	0	Median	25396000	15881000	9514500	7783	599	7315	15342	37592	37592		1	9606
KQTIDNSQGAYQEAFDISKK	3	0	Unmodified	2270.1179	0.11788989	599	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	2	15	0															2		14.458	14.458	3;4	0.0087832	8077	DP690-15	66.644	66.644			0.82391	0.89751	22.978	2	0	Median	45987000	24705000	21282000	7784	599	7316	15343;15344	37593;37594;37595	37595		3	9606
KQTLILLTNLLQEEFVK	2	0	Unmodified	2029.1823	0.18232805	731	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	1	10	0										1							22.655	22.655	3	0.00045103	20275	DP690-10	88.319	88.319			0.72441	0.85028	NaN	1	0	Median	10792000	5757300	5034300	7785	731	7317	15345	37596	37596		1	9606
KQVCGDSIKPEETEQEVAADETR	2	1	Unmodified	2618.213	0.21298884	1863	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	2	12	0												1					13.27	13.27	4	0.0011017	6516	DP690-12	93.196	79.277			0.67217	0.74182	NaN	1	0	Median	100530000	54661000	45869000	7786	1863	7318	15346	37597	37597		1	9606
KQVSSHIQVLAR	1	1	Unmodified	1364.7888	0.78883202	608	P28347;Q15561;Q99594;Q15562	TEAD1;TEAD4;TEAD3;TEAD2	Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-3;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4	yes	no	0	0	1	13	0													1				10.478	10.478	3	3.3541E-05	2751	DP690-13	176.18	142.64			0.82363	0.90698	NaN	1	0	Median	150850000	82621000	68224000	7787	608	7319	15347	37598;37599	37598		2	9606
KQVVNIPSFIVR	1	1	Unmodified	1398.8347	0.83471958	760	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	15	0															1		17.334	17.334	3	0.00053666	11808	DP690-15	96.067	71			0.81879	0.90342	NaN	1	0	Median	119910000	62765000	57150000	7788	760	7320	15348	37600;37601;37602;37603	37603		4	9606
KQYPISLVLAPTR	1	1	Unmodified	1484.8715	0.87149901	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	1	9.29	3.37				2							3	2					16.881	16.881	2;3	4.9335E-05	11623	DP690-12	127.3	92.913			0.74453	0.93952	8.8276	4	0	Median	118880000	64215000	54662000	7789	96	7321	15349;15350;15351;15352;15353;15354;15355	37604;37605;37606;37607;37608;37609;37610;37611;37612;37613;37614;37615;37616	37607		13	9606
KREELSNVLAAMR	1	2	Oxidation (M)	1531.8141	0.81406049	2478	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	2	16	0																2	12.433	12.433	3;4	0.001998	5192	DP690-16	82.85	60.99			0.79934	0.82601	3.2783	2	0	Median	96355000	56076000	40279000	7790	2478	7322	15356;15357	37617;37618;37619	37619	2918	3	9606
KRHEMPPHIYAITDTAYR	1	2	Oxidation (M)	2214.1004	0.10040611	668	P35579	MYH9	Myosin-9	yes	yes	0	1	2	2	0		1															12.461	12.461	4	0.00081767	4723	DP690-2	80.738	66.301			1.0353	1.1046	NaN	1	0	Median	10717000	4874600	5842300	7791	668	7323	15358	37620	37620	950	1	9606
KRPAPQQIQQVQQQAVQNR	1	2	Unmodified	2244.2199	0.21994439	1862	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	2	12	0												1					11.494	11.494	4	0.0001495	4106	DP690-12	115.38	103.32			0.68495	0.77801	NaN	1	0	Median	39968000	25692000	14277000	7792	1862	7324	15359	37621;37622;37623	37621		3	9606
KSAEFLLHMLK	2	0	Oxidation (M)	1331.7271	0.72714296	529	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	1	1	11	4							1								1		13.822	13.822	3	2.3666E-05	7013	DP690-15	144.17	103.01			0.87532	0.96911	6.5011	2	0	Median	459570000	238490000	221070000	7793	529	7325	15360;15361	37624;37625;37626;37627;37628	37626	682	5	9606
KSCVEEPEPEPEAAEGDGDKK	3	0	Unmodified	2300.0114	0.011435487	844	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	2	6	0						2											10.601	10.601	3;4	0.00012602	2984	DP690-6	108.69	92.029			0.55774	0.55753	24.179	2	0	Median	14047000	8652000	5394800	7794	844	7326	15362;15363	37629;37630;37631;37632;37633;37634;37635	37633		7	9606
KSDGIYIINLK	2	0	Unmodified	1262.7234	0.72343779	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	1	11.3	3.77						1								2			16.329	16.329	2	5.5828E-06	10644	DP690-14	210.08	103.2			0.90943	0.97482	5.7469	2	0	Median	698780000	373520000	325260000	7795	428	7327	15364;15365;15366	37636;37637;37638;37639;37640;37641;37642;37643;37644	37639		9	9606
KSDGIYIINLKR	2	1	Unmodified	1418.8245	0.82454882	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	2	14	0														1			14.354	14.354	3	0.017724	8026	DP690-14	95.094	55.348			NaN	NaN	NaN	0	0	Median	24872000	0	24872000	7796	428	7328	15367	37645;37646	37645		2	9606
KSDIDEIVLVGGSTR	1	1	Unmodified	1587.8468	0.84680041	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	6.67	3.77				2								1					16.542	16.542	2;3	3.1898E-09	10588	DP690-4	132.65	102.21			1.5164	1.7295	40.961	3	0	Median	135660000	62776000	72880000	7797	462	7329	15368;15369;15370	37647;37648;37649;37650;37651;37652;37653;37654;37655	37651		9	9606
KSDLFQDDLYPDTAGPEAALEAEEWFEGK	2	0	Unmodified	3270.4881	0.48808429	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	1	9	0									1								23.353	23.353	3	1.7392E-05	18799	DP690-9	91.67	81.932			0.69713	0.85922	NaN	1	0	Median	4028000	2206400	1821700	7798	2395	7330	15371	37656;37657;37658;37659;37660;37661	37659		6	9606
KSDVEAIFSK	2	0	Unmodified	1122.5921	0.59208927	410	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	14	0														1			14.181	14.181	2	0.00034871	7690	DP690-14	133.91	51.671			0.84738	0.94336	NaN	1	0	Median	413420000	210590000	202830000	7799	410	7331	15372	37662;37663;37664	37662		3	9606
KSDVETIFSK	2	0	Unmodified	1152.6027	0.60265396	2374	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	1	14	0														1			13.899	13.899	2	0.00032403	7336	DP690-14	135.8	90.815			0.81456	0.91234	NaN	1	0	Median	61574000	28522000	33051000	7800	2374	7332	15373	37665;37666	37666		2	9606
KSEIEYYAMLAK	2	0	Oxidation (M)	1460.7221	0.72211717	1002	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	1	1	12	4								1								1	15.837	15.837	2	0.00034114	9530	DP690-16	156.01	108.83			1.0714	1.2236	6.405	2	0	Median	146760000	75330000	71433000	7801	1002	7333	15374;15375	37667;37668;37669;37670;37671;37672;37673	37668	1522	7	9606
KSEIQTLKEEIEQSLTK	3	0	Unmodified	2003.0787	0.078650837	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	2	11	0											1						19.62	19.62	3	6.7928E-14	16055	DP690-11	212.35	187.17			0.95693	1.0365	NaN	1	0	Median	72301000	42419000	29882000	7802	1269	7334	15376	37674;37675;37676;37677	37675		4	9606
KSELPQDVYTIK	2	0	Unmodified	1419.7609	0.76094551	1291	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	1	4	0				1													14.424	14.424	2	0.060203	7790	DP690-4	108.35	46.698			NaN	NaN	NaN	0	0	Median	0	0	0	7803	1291	7335	15377	37678	37678		1	9606
KSESEVEEAAAIIAQRPDNPR	1	2	Unmodified	2309.1612	0.16115169	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	2	11	0											2						16.305	16.305	3;4	2.1917E-16	11267	DP690-11	185.99	153.48			0.61123	0.65406	NaN	1	0	Median	988360000	755180000	233180000	7804	1365	7336	15378;15379	37679;37680;37681;37682	37680		4	9606
KSFTPDHVVYAR	1	1	Unmodified	1418.7306	0.73064844	1482	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	1	13	0													1				11.73	11.73	3	0.0032436	4389	DP690-13	74.698	51.813			0.83604	1.0333	NaN	1	0	Median	19542000	11245000	8296600	7805	1482	7337	15380	37683	37683		1	9606
KSFYGSTLFLCR	1	1	Unmodified	1477.7388	0.73877028	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		1															17.117	17.117	3	0.044378	10334	DP690-2	40.373	12.945			0.95589	0.94098	NaN	1	0	Median	6423000	3625300	2797700	7806	789	7338	15381	37684	37684		1	9606
KSHDAIIDDLNR	1	1	Unmodified	1395.7106	0.71064128	2058	Q9BZF9	UACA	Uveal autoantigen with coiled-coil domains and ankyrin repeats	yes	yes	0	0	1	9	0									1								15.498	15.498	2	0.090877	9112	DP690-9	63.184	43.043			2.4878	2.8853	NaN	1	0	Median	48800000	11838000	36962000	7807	2058	7339	15382	37685	37685		1	9606
KSLNSIEFR	1	1	Unmodified	1092.5928	0.59275797	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								12.856	12.856	2	0.0023597	5664	DP690-9	144.77	108.39			NaN	NaN	NaN	0	0	Median	19861000	0	19861000	7808	1046	7340	15383	37686;37687	37687		2	9606
KSNFAEALAAHK	2	0	Unmodified	1285.6779	0.67788459	402	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	1	4	0				1													11.6	11.6	3	0.0071146	4178	DP690-4	91.093	45.203			NaN	NaN	NaN	0	0	Median	5508300	0	5508300	7809	402	7341	15384	37688;37689	37689		2	9606
KSQIFSTASDNQPTVTIK	2	0	Unmodified	1964.0215	0.021470309	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	4	0				1													14.466	14.466	3	0.00021089	7842	DP690-4	94.057	69.577			1.3829	1.4349	NaN	1	0	Median	24302000	9598200	14704000	7810	462	7342	15385	37690;37691;37692;37693	37691		4	9606
KSTVLQLGIR	1	1	Unmodified	1113.687	0.68699271	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	1	12	0												1					14.035	14.035	2	0.069505	7672	DP690-12	70.256	41.094			0.85434	1.0874	NaN	1	0	Median	19969000	9177600	10791000	7811	1589	7343	15386	37694	37694		1	9606
KSVMLYAAEMIPK	2	0	2 Oxidation (M)	1511.7728	0.77277253	431	P09132	SRP19	Signal recognition particle 19 kDa protein	yes	yes	0	2	1	16	0																1	14.158	14.158	2	0.01042	7549	DP690-16	69.815	37.597			0.63425	0.73119	NaN	1	0	Median	7461100	3645200	3815900	7812	431	7344	15387	37695;37696;37697;37698	37698	500;501	4	9606
KSYESSEDCSEAAGSPAR	1	1	Unmodified	1929.801	0.80104878	1495	Q6P6C2	ALKBH5	RNA demethylase ALKBH5	yes	yes	0	0	1	13	0													1				10.383	10.383	3	5.4779E-05	2661	DP690-13	114.21	73.514			0.70378	0.81375	NaN	1	0	Median	70642000	40375000	30267000	7813	1495	7345	15388	37699;37700;37701	37699		3	9606
KSYQALALWK	2	0	Unmodified	1206.6761	0.67609367	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	1	10	0										1							15.727	15.727	2	0.018848	10642	DP690-10	85.533	41.184			0.73028	0.93906	NaN	1	0	Median	54367000	35003000	19364000	7814	272	7346	15389	37702	37702		1	9606
KTAAELLQSQGSQAGGSQTLK	2	0	Unmodified	2102.0968	0.096760517	1248	Q14141	SEPT6	Septin-6	yes	yes	0	0	1	13	0													1				13.88	13.88	3	0.00060167	7221	DP690-13	75.912	58.049			0.7656	0.86405	NaN	1	0	Median	41171000	21279000	19893000	7815	1248	7347	15390	37703;37704	37703		2	9606
KTAFGIISTVK	2	0	Unmodified	1163.6914	0.69140938	1040	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	1	15	0															1		14.695	14.695	2	0.0020683	8326	DP690-15	107.11	57.695			0.86651	0.99226	NaN	1	0	Median	48860000	24340000	24520000	7816	1040	7348	15391	37705;37706	37706		2	9606
KTAGLSDLY	1	0	Unmodified	966.50221	0.50221163	1958	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	1	13	0													1				15.86	15.86	2	0.037532	9978	DP690-13	82.241	65.701			1.183	1.3653	NaN	1	0	Median	79841000	28766000	51075000	7817	1958	7349	15392	37707;37708	37708		2	9606
KTASVLSKDDVAPESGDTTVK	3	0	Unmodified	2147.0958	0.095757464	285	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	2	12	0												1					12.094	12.094	3	0.00063392	4934	DP690-12	86.761	86.761			0.98179	1.0634	NaN	1	0	Median	17314000	8760900	8552700	7818	285	7350	15393	37709;37710	37709		2	9606
KTDDVEAMSSQPALALDER	1	1	Oxidation (M)	2090.979	0.97901315	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	1	1	9.5	0.5									1	1							14.238	14.238	3	1.5982E-05	8398	DP690-10	122.16	106.15			0.79545	0.96204	10.869	2	0	Median	84838000	48645000	36193000	7819	763	7351	15394;15395	37711;37712;37713;37714;37715	37712	1136	5	9606
KTDIAAFVK	2	0	Unmodified	991.57023	0.57023162	755	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	0	1	6	0						1											13.575	13.575	2	0.011822	6366	DP690-6	98.044	28.846			0.88605	0.91597	NaN	1	0	Median	15089000	8813100	6275800	7820	755	7352	15396	37716;37717	37717		2	9606
KTEPATGFIDGDLIESFLDISRPK	2	1	Unmodified	2648.3697	0.36974748	1355	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	2	10.3	0.471										2	1						22.803	22.803	3;4	0.00030693	20501	DP690-10	104.53	84.536			0.67957	0.77547	7.2487	3	0	Median	50501000	28200000	22301000	7821	1355	7353	15397;15398;15399	37718;37719;37720;37721;37722	37720		5	9606
KTEVLMENFR	1	1	Oxidation (M)	1281.6387	0.63872189	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	1	1	13	0													1				12.577	12.577	2	0.021583	5367	DP690-13	81.338	57.308			0.80241	0.9788	NaN	1	0	Median	30722000	14637000	16085000	7822	2431	7354	15400	37723	37723	2869	1	9606
KTFSYAGFEMQPK	2	0	Oxidation (M)	1548.7283	0.72826518	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	1	4	0				1													14.07	14.07	3	0.048569	7333	DP690-4	42.52	22.268			1.6917	1.742	NaN	1	0	Median	8359000	2708200	5650900	7823	1959	7355	15401	37724	37724		1	9606
KTGCNVLLIQK	2	0	Unmodified	1272.7224	0.72239194	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	1	4	0				1													12.635	12.635	2	0.017261	5403	DP690-4	92.239	12.265			1.5385	1.5788	NaN	1	0	Median	5122700	1761400	3361200	7824	827	7356	15402	37725;37726	37726		2	9606
KTHIQDNHDGTYTVAYVPDVTGR	1	1	Unmodified	2586.2463	0.2462783	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	9.12	2.85		1							2	3	1	1					14.226	14.226	3;4;5	1.0818E-20	8337	DP690-10	192.57	176.27			0.80841	0.94412	23.558	8	0	Median	4886700000	2775300000	2111399999.9999998	7825	549	7357	15403;15404;15405;15406;15407;15408;15409;15410	37727;37728;37729;37730;37731;37732;37733;37734;37735;37736;37737;37738;37739;37740;37741;37742;37743;37744;37745;37746;37747;37748;37749;37750;37751;37752;37753	37738		27	9606
KTKPYIQVDIGGGQTK	3	0	Unmodified	1731.9519	0.95193418	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	2	4	0				1													12.566	12.566	3	0.018818	5253	DP690-4	91.065	91.065			1.5044	1.5306	NaN	1	0	Median	25687000	10544000	15142000	7826	462	7358	15411	37754	37754		0	9606
KTLSGLEVSMVTAVPGR	1	1	Oxidation (M)	1759.9502	0.95021962	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	1	1	4	0				1													15.286	15.286	3	0.00036539	8995	DP690-4	89.049	48.503			0.76122	0.86819	NaN	1	0	Median	27412000	16760000	10652000	7827	353	7359	15412	37755;37756;37757	37755	360	3	9606
KTLVLIGAQGVGR	1	1	Unmodified	1310.8034	0.80341945	2280;1256	Q9NZW5;Q14168	MPP6;MPP2	MAGUK p55 subfamily member 6;MAGUK p55 subfamily member 2	no	no	0	0	1	12	0												1					14.469	14.469	3	0.001366	8286	DP690-12	84.892	61.138			0.78786	0.93455	NaN	1	0	Median	86046000	48687000	37359000	7828	2280;1256	7360	15413	37758;37759	37758		2	9606
KTNNFSAFLANVR	1	1	Unmodified	1480.7787	0.77866126	2163	Q9HBM1	SPC25	Kinetochore protein Spc25	yes	yes	0	0	1	15	0															1		17.168	17.168	3	0.00064024	11597	DP690-15	77.912	65.996			0.871	1.0199	NaN	1	0	Median	18378000	8635100	9742500	7829	2163	7361	15414	37760;37761	37760		2	9606
KTPPAPSPFDLPELK	2	0	Unmodified	1635.8872	0.88720866	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	1	10	0										1							17.749	17.749	3	0.00050463	13469	DP690-10	85.619	64.762			0.46941	0.55982	NaN	1	0	Median	145610000	98690000	46922000	7830	311	7362	15415	37762;37763;37764	37763		3	9606
KTSDFNTFLAQEGCTK	2	0	Unmodified	1845.8567	0.85671317	2343	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	1	6	0						1											15.823	15.823	3	0.0050867	9115	DP690-6	66.289	45.632			0.87546	0.90502	NaN	1	0	Median	6995000	3782500	3212500	7831	2343	7363	15416	37765;37766;37767;37768	37765		4	9606
KTTDTASVQNEAKLDEILK	3	0	Unmodified	2103.1059	0.10592822	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	2	13	0													1				15.117	15.117	3	4.5031E-10	8926	DP690-13	154.72	117.9			0.90548	0.9485	NaN	1	0	Median	48629000	24695000	23934000	7832	2395	7364	15417	37769;37770	37769		2	9606
KTTHFVEGGDAGNREDQINR	1	2	Unmodified	2243.0679	0.067920004	525	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	2	15	0															1		10.438	10.438	4	0.055749	2792	DP690-15	51.786	36.264			0.78222	0.84262	NaN	1	0	Median	66918000	37515000	29403000	7833	525	7365	15418	37771	37771		1	9606
KTTSVSLTIGSSSPK	2	0	Unmodified	1491.8144	0.81443765	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	11	0											1						12.667	12.667	2	3.5325E-05	5942	DP690-11	157.35	117.41			0.71212	0.84945	NaN	1	0	Median	33461000	16876000	16585000	7834	1758	7366	15419	37772;37773;37774	37773		3	9606
KTTTLSGTAPAAGVVPSR	1	1	Unmodified	1712.9421	0.94209778	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	10	0										1							12.859	12.859	2	9.17E-13	6414	DP690-10	187.16	139.12			0.61085	0.74282	NaN	1	0	Median	23936000	14152000	9784100	7835	604	7367	15420	37775;37776;37777	37776		3	9606
KTVTAMDVVYALK	2	0	Oxidation (M)	1453.7851	0.78505177	990	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	12.8	3.92								2								3	16.198	16.198	2;3	0.00013425	9939	DP690-16	133.88	94.093			0.8828	1.0073	15.415	4	0	Median	245730000	122810000	122920000	7836	990	7368	15421;15422;15423;15424;15425	37778;37779;37780;37781;37782;37783;37784;37785;37786;37787;37788;37789;37790	37783	1510	13	9606
KTVTAMDVVYALKR	2	1	Oxidation (M)	1609.8862	0.8861628	990	P62805	HIST1H4A	Histone H4	yes	yes	0	1	2	12	4								1								1	15.147	15.147	3	8.7834E-07	8905	DP690-16	188.63	173.64			0.99998	1.087	9.5185	2	0	Median	260470000	121290000	139180000	7837	990	7369	15426;15427	37791;37792;37793;37794;37795	37793	1510	5	9606
KVAELEEEQSQGSSSYSDWVK	2	0	Unmodified	2385.0972	0.097214027	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	1	10.5	1.5									1			1					12.788	12.788	3;5	0.00021412	9604	DP690-9	92.792	82.98			0.48441	0.56756	87.513	2	0	Median	9908400	5538500	4369900	7838	1048	7370	15428;15429	37796;37797;37798;37799;37800	37797		4	9606
KVAEPELMGTPDGTCYPPPPVPR	1	1	Oxidation (M)	2523.2138	0.21378088	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	1	2	0		1															15.632	15.632	3	9.8725E-05	8481	DP690-2	110.4	94.705			0.71981	0.70858	NaN	1	0	Median	8159000	4427400	3731700	7839	602	7371	15430	37801;37802;37803;37804	37804	813	4	9606
KVCGDSDKGFVVINQK	3	0	Unmodified	1792.9142	0.91416847	702	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	2	4	0				1													12.139	12.139	3	0.0083914	4829	DP690-4	67.299	44.95			1.432	1.4569	NaN	1	0	Median	11705000	3835000	7869700	7840	702	7372	15431	37805	37805		1	9606
KVDEGAGDSAAVASGGAQTLALAGSPAPSGHPK	2	0	Unmodified	2973.4792	0.47919136	2279	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	1	3	0			1														14.747	14.747	4	2.1065E-05	8357	DP690-3	59.431	43.396			0.50682	0.54774	NaN	1	0	Median	21701000	13411000	8289500	7841	2279	7373	15432	37806;37807	37806		2	9606
KVDSSVLGSLSSVPLTGFSFSPGNSSLFGK	2	0	Unmodified	3000.5444	0.54441738	2379	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	1	12	0												1					22.929	22.929	3	0.00014374	19434	DP690-12	86.261	67.163			NaN	NaN	NaN	0	0	Median	2147000	2147000	0	7842	2379	7374	15433	37808;37809;37810	37808		3	9606
KVEAQLQELQVK	2	0	Unmodified	1411.8035	0.80347903	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	4.67	3.77		2								1							13.832	13.832	2;3	4.7824E-08	6303	DP690-2	210.95	135.3			0.84689	1.045	11.9	3	0	Plateau	74052000	37120000	36932000	7843	668	7375	15434;15435;15436	37811;37812;37813;37814;37815;37816	37814		6	9606
KVEDLFLTFAK	2	0	Unmodified	1309.7282	0.72818882	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							19.177	19.177	2	0.00032283	15536	DP690-10	178.53	125.04			0.78325	0.9325	NaN	1	0	Median	148940000	84637000	64301000	7844	1236	7376	15437	37817;37818	37817		2	9606
KVEEAEPEEFVVEK	2	0	Unmodified	1660.8196	0.8195826	1189	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	1	13.5	3.2								1							2	1	14.355	14.355	2;3	9.3382E-16	7779	DP690-15	296.28	216.04			0.76016	0.86801	7.9543	4	0	Median	1655999999.9999998	925500000	730500000	7845	1189	7377	15438;15439;15440;15441	37819;37820;37821;37822;37823;37824;37825;37826;37827;37828;37829;37830;37831	37820		13	9606
KVEEEEDESALK	2	0	Unmodified	1404.662	0.66201933	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	1	11	0											1						10.712	10.712	2	0.0022091	3121	DP690-11	179.94	123.89			NaN	NaN	NaN	0	0	Median	0	0	0	7846	1280	7378	15442	37832	37832		1	9606
KVEEEGSPGDPDHEASTQGR	1	1	Unmodified	2123.9356	0.93556843	2279	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	1	3.33	0.471			2	1													10.282	10.282	3;4	1.6038E-14	2492	DP690-3	189.34	166.49			0.6867	0.7616	5.7895	2	0	Median	79391000	47601000	31789000	7847	2279	7379	15443;15444;15445	37833;37834;37835;37836;37837;37838;37839;37840;37841;37842	37837		10	9606
KVEELQACVETAR	1	1	Unmodified	1531.7664	0.7664416	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	1	10	0										1							12.79	12.79	3	0.018948	6279	DP690-10	47.622	30.22			0.83932	1.0321	NaN	1	0	Median	108910000	56529000	52381000	7848	1301	7380	15446	37843	37843		1	9606
KVEEVVYDLSIR	1	1	Unmodified	1448.7875	0.78749461	1340	Q15631	TSN	Translin	yes	yes	0	0	1	7	0							2										16.701	16.701	2;3	0.00043944	10458	DP690-7	99.669	49.185			0.81376	0.85768	13.062	2	0	Median	38733000	19808000	18925000	7849	1340	7381	15447;15448	37844;37845;37846;37847	37846		4	9606
KVENEDMNKDQILLEK	3	0	Oxidation (M)	1960.9776	0.97755658	1310	Q15019	SEPT2	Septin-2	yes	yes	0	1	2	14	0														1			11.877	11.877	3	0.00039713	4578	DP690-14	94.61	78.182			0.78941	0.80967	NaN	1	0	Median	111010000	59240000	51769000	7850	1310	7382	15449	37848;37849;37850	37848	1998	3	9606
KVENEDMNKDQILLEK	3	0	Unmodified	1944.9826	0.98264196	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	2	14	0														1			13.163	13.163	3	6.069E-14	6282	DP690-14	213	140.82			0.77979	0.7998	NaN	1	0	Median	212030000	115040000	96993000	7851	1310	7382	15450	37851;37852;37853;37854	37851		4	9606
KVEPGQAIPLTAVPGQGPPPGGQPDPELLQFCR	1	1	Unmodified	3449.7766	0.77655936	1505	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	1	14	0														1			19.396	19.396	3	0.0042256	14911	DP690-14	57.934	35.592			NaN	NaN	NaN	0	0	Median	32786000	32786000	0	7852	1505	7383	15451	37855;37856;37857	37856		3	9606
KVEQLQQEYTEMK	2	0	Unmodified	1652.808	0.80797206	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	1	11.7	0.471											1	2					13.545	13.545	2;3	2.0011E-10	6901	DP690-12	327.06	246.14			0.56862	0.63479	54.292	3	0	Plateau	473880000	270650000	203220000	7853	1269	7384	15452;15453;15454	37858;37859;37860;37861;37862	37860		5	9606
KVEQLQQEYTEMK	2	0	Oxidation (M)	1668.8029	0.80288668	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	1	1	9.22	2.97				2					2		3	2					11.843	11.843	2;3	2.2149E-10	4611	DP690-12	226.42	197.17			0.84246	0.95112	15.914	6	0	Median	286700000	148940000	137760000	7854	1269	7384	15455;15456;15457;15458;15459;15460;15461;15462;15463	37863;37864;37865;37866;37867;37868;37869;37870;37871;37872;37873;37874;37875;37876;37877;37878;37879;37880;37881;37882;37883;37884;37885;37886;37887	37871	1938	25	9606
KVESLQEEIAFLK	2	0	Unmodified	1532.845	0.84500949	424	P08670	VIM	Vimentin	yes	yes	0	0	1	11.3	3.35				1								2	2	1			18.371	18.371	2;3	9.5895E-13	13282	DP690-13	286.19	215.79			0.82961	0.90074	24.647	5	0	Median	4204599999.9999995	2298300000	1906399999.9999998	7855	424	7385	15464;15465;15466;15467;15468;15469	37888;37889;37890;37891;37892;37893;37894;37895;37896;37897;37898;37899;37900;37901;37902;37903;37904;37905;37906;37907	37897		20	9606
KVESLQEEIAFLKK	3	0	Unmodified	1660.94	0.93997251	424	P08670	VIM	Vimentin	yes	yes	0	0	2	10.8	3.96				1								1	1	1			16.54	16.54	3	1.6511E-14	10801	DP690-13	225.21	198.62			0.89696	0.95541	24.494	4	0	Median	2085699999.9999998	1114800000	970860000	7856	424	7386	15470;15471;15472;15473	37908;37909;37910;37911;37912;37913;37914;37915	37910		8	9606
KVFANPEDCVAFGK	2	0	Unmodified	1580.7657	0.76571331	460	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	1	16	0																2	14.933	14.933	2;3	5.0899E-05	8386	DP690-16	164.48	113.39			0.40214	0.45491	67.399	2	0	Median	67495000	46610000	20886000	7857	460	7387	15474;15475	37916;37917;37918;37919;37920;37921	37917		6	9606
KVFANPEDCVAFGKGENAK	3	0	Unmodified	2080.0048	0.004774387	460	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	2	16	0																1	13.573	13.573	3	0.00011765	6654	DP690-16	109.28	109.28			0.62129	0.76417	NaN	1	0	Median	15282000	7711000	7571200	7858	460	7388	15476	37922;37923	37923		2	9606
KVGTFFSEVKPAGPTVEQQGEMAR	2	1	Oxidation (M)	2608.2955	0.29553668	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	1	2	11	0											1						14.638	14.638	4	0.019523	8798	DP690-11	46.295	28.283			0.69568	0.84156	NaN	1	0	Median	156460000	74699000	81764000	7859	891	7389	15477	37924	37924	1354	1	9606
KVGYTPDWIFLLR	1	1	Unmodified	1606.8871	0.88714908	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	1	10.5	0.5										1	1						21.151	21.151	3	3.8082E-05	18309	DP690-10	147.33	147.33			0.78834	0.98623	NaN	1	0	Median	51723000	32737000	18986000	7860	1075	7390	15478;15479	37925;37926;37927;37928;37929;37930	37926		6	9606
KVIDDTNITR	1	1	Unmodified	1173.6354	0.63535107	388	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	1	13	0													1				11.085	11.085	2	0.00019299	3512	DP690-13	157.34	102.57			0.78362	0.96161	NaN	1	0	Median	28001000	15229000	12772000	7861	388	7391	15480	37931;37932;37933;37934	37932		4	9606
KVIEEQLEPAVEK	2	0	Unmodified	1510.8243	0.82427405	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	10	0										1							13.326	13.326	3	0.069763	7081	DP690-10	37.366	18.167			0.73491	0.92716	NaN	1	0	Median	69768000	36809000	32959000	7862	732	7392	15481	37935	37935		1	9606
KVIGIECSSISDYAVK	2	0	Unmodified	1767.9077	0.9076861	1962	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	1	6	0						2											15.863	15.863	2;3	0.00017875	9177	DP690-6	103.01	82.916			1.5633	1.6161	NaN	1	0	Median	11446000	4060800	7385600	7863	1962	7393	15482;15483	37936;37937;37938	37937		3	9606
KVIQYLAYVASSHK	2	0	Unmodified	1605.8879	0.88787736	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		1															15.409	15.409	3	0.0018131	8168	DP690-2	77.42	49.331			1.2399	1.2872	NaN	1	0	Median	16948000	7544200	9403400	7864	668	7394	15484	37939;37940;37941;37942	37940		4	9606
KVLGSSTSATNSTSVSSR	1	1	Unmodified	1767.8963	0.8962698	1305	Q15004	KIAA0101	PCNA-associated factor	yes	yes	0	0	1	12.8	3.92								2								3	10.357	10.357	2;3	9.8203E-24	2780	DP690-16	229.22	165.91			0.77902	0.82604	9.0583	3	0	Plateau	137250000	77390000	59855000	7865	1305	7395	15485;15486;15487;15488;15489	37943;37944;37945;37946;37947;37948;37949;37950;37951;37952;37953;37954	37943		12	9606
KVLISDSLDPCCR	1	1	Unmodified	1561.7592	0.75924773	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	1	4	0				1													14.754	14.754	3	0.0002973	8201	DP690-4	83.204	53.654			1.2886	1.4696	NaN	1	0	Median	35333000	16684000	18649000	7866	167	7396	15490	37955;37956	37955		2	9606
KVLYLPSFFTYAK	2	0	Unmodified	1575.8701	0.87010203	2273	Q9NZJ7	MTCH1	Mitochondrial carrier homolog 1	yes	yes	0	0	1	14	0														1			19.743	19.743	3	0.056336	15248	DP690-14	42.317	27.32			0.62362	0.70145	NaN	1	0	Median	16171000	8135800	8034900	7867	2273	7397	15491	37957	37957		1	9606
KVMSQEIQEQLHK	2	0	Oxidation (M)	1612.8243	0.82429083	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	1	9	0									2								10.58	10.58	3	0.018519	2897	DP690-9	78.401	29.281			1.0057	1.2081	NaN	1	0	Median	10849000	4326900	6521800	7868	1264	7398	15492;15493	37958;37959	37959	1916	2	9606
KVNESSLNWPQLENIGNFIK	2	0	Unmodified	2329.2066	0.20664532	1330	Q15417	CNN3	Calponin-3	yes	yes	0	0	1	14	0														2			21.074	21.074	2;3	1.4651999999999998E-28	16978	DP690-14	222.88	168.86			0.70739	0.79028	NaN	1	0	Median	145470000	87939000	57528000	7869	1330	7399	15494;15495	37960;37961;37962;37963;37964;37965	37965		6	9606
KVNNADDFPNLFR	1	1	Unmodified	1548.7685	0.76849051	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0		1															17.174	17.174	3	0.0048209	10320	DP690-2	71.976	48.265			1.1592	1.1412	NaN	1	0	Median	5576000	3004000	2572000	7870	1179	7400	15496	37966;37967;37968;37969;37970;37971	37968		6	9606
KVPGVTAIELDEDTGTFR	1	1	Unmodified	1946.9949	0.99492121	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	11.4	1.36									1		1	2	1				17.348	17.348	2;3	1.9031E-23	12229	DP690-12	185.2	171.2			0.80243	0.78171	14.655	4	0	Linear	1024199999.9999999	583300000	440880000	7871	829	7401	15497;15498;15499;15500;15501	37972;37973;37974;37975;37976;37977;37978;37979;37980;37981;37982;37983;37984	37975		12	9606
KVPQVSTPTLVEVSR	1	1	Unmodified	1638.9305	0.93047046	37	CON__P02769			no	no	0	0	1	4.38	4.12	1	1	3	2											1		15.122	15.122	2;3	6.1206E-12	8587	DP690-4	157.37	121.78		+	NaN	NaN	NaN	0	0	Median	192620000	192620000	0	7872	37	7402	15502;15503;15504;15505;15506;15507;15508;15509	37985;37986;37987;37988;37989;37990;37991;37992;37993;37994;37995;37996;37997	37994		13	
KVQVPNCDEIFYAGTGNLLLR	1	1	Unmodified	2406.2366	0.23656524	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	1	3	0			1														19.896	19.896	3	0.0011487	15099	DP690-3	59.857	48.43			2.3077	2.5595	NaN	1	0	Median	4601400	1317800	3283700	7873	878	7403	15510	37998	37998		1	9606
KVTEELLTDNR	1	1	Unmodified	1316.6936	0.69359423	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	1	9.33	3.77				1								2					12.767	12.767	2;3	0.00017991	5897	DP690-12	208.15	163.77			0.73646	0.86827	15.773	3	0	Plateau	160630000	92546000	68081000	7874	2342	7404	15511;15512;15513	37999;38000;38001;38002;38003	38000		5	9606
KVTHAVVTVPAYFNDAQR	1	1	Unmodified	2015.0589	0.058858868	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	4	0				1													14.64	14.64	4	1.4614E-07	8001	DP690-4	142.4	116.43			1.0555	1.2038	NaN	1	0	Median	47046000	22602000	24444000	7875	462	7405	15514	38004;38005;38006	38004		3	9606
KVTVEPHPELR	1	1	Unmodified	1303.7248	0.72483478	1436	Q5T440	IBA57	Putative transferase CAF17, mitochondrial	yes	yes	0	0	1	14	0														1			10.474	10.474	3	6.0914E-05	2760	DP690-14	122.7	88.809			0.65283	0.80949	NaN	1	0	Median	47503000	27802000	19701000	7876	1436	7406	15515	38007;38008	38007		2	9606
KVVAEVYDQER	1	1	Unmodified	1334.683	0.68302954	2348	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	1	12	0												1					11.356	11.356	2	0.0020104	3878	DP690-12	131.12	66.695			0.81803	1.0176	NaN	1	0	Median	47190000	26517000	20674000	7877	2348	7407	15516	38009;38010;38011;38012;38013	38011		5	9606
KVVGCSCVVVK	2	0	Unmodified	1233.6573	0.65734884	582	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	1	16	0																1	10.51	10.51	2	0.00058208	2985	DP690-16	154.84	95.69			0.94894	1.0436	NaN	1	0	Median	262620000	137920000	124700000	7878	582	7408	15517	38014;38015;38016	38015		3	9606
KVVGCSCVVVKDYGK	3	0	Unmodified	1696.864	0.86404715	582	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	2	16	0																1	11.26	11.26	3	0.0026945	3915	DP690-16	69.379	60.009			0.98225	1.2081	NaN	1	0	Median	22719000	10488000	12232000	7879	582	7409	15518	38017;38018	38018		2	9606
KVVGDVAYDEAK	2	0	Unmodified	1292.6612	0.66123147	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	7.67	3.4			1						1		1						11.406	11.406	2	0.00020968	3836	DP690-3	132.17	109.83			0.92541	1.0352	20.263	3	0	Plateau	248100000	129320000	118780000	7880	470	7410	15519;15520;15521	38019;38020;38021;38022;38023;38024;38025;38026;38027;38028;38029;38030	38025		12	9606
KVVGDVAYDEAKER	2	1	Unmodified	1577.8049	0.80493559	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	2	7.67	3.4			1						1		1						11.018	11.018	3	3.179E-05	3659	DP690-11	188.63	158.6			0.98969	1.0589	19.352	3	0	Median	420320000	213070000	207250000	7881	470	7411	15522;15523;15524	38031;38032;38033;38034;38035;38036	38033		6	9606
KVVNPLFEK	2	0	Unmodified	1072.6281	0.62808085	984	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	14.5	0.5														1	1		13.267	13.267	2	0.0010244	6425	DP690-15	152.11	103.35			0.88739	1.0042	4.3114	2	0	Median	140330000	72599000	67727000	7882	984	7412	15525;15526	38037;38038;38039;38040	38039		4	9606
KVVPCLVTPVTGR	1	1	Unmodified	1424.8174	0.81735495	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										1							14.302	14.302	3	0.011569	8538	DP690-10	62.035	29.468			0.67535	0.79353	NaN	1	0	Median	213510000	123840000	89671000	7883	250	7413	15527	38041;38042	38042		2	9606
KVVQSLEQTAR	1	1	Unmodified	1257.7041	0.70409934	1340	Q15631	TSN	Translin	yes	yes	0	0	1	15	0															2		10.667	10.667	2;3	4.2471E-05	3133	DP690-15	139.32	98.16			0.82221	0.9384	NaN	1	0	Median	41275000	20175000	21099000	7884	1340	7414	15528;15529	38043;38044;38045;38046;38047;38048	38046		6	9606
KVVVCDNGTGFVK	2	0	Unmodified	1421.7337	0.7336849	941	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	1	14	0														1			12.646	12.646	3	0.032881	5620	DP690-14	96.23	49.5			NaN	NaN	NaN	0	0	Median	0	0	0	7885	941	7415	15530	38049	38049		1	9606
KVYENYPTYDLTER	1	1	Unmodified	1789.8523	0.85227972	674	P35659	DEK	Protein DEK	yes	yes	0	0	1	13	0													2				14.9	14.9	2;3	0.0030398	8663	DP690-13	73.834	73.834			0.71211	0.80478	NaN	1	0	Median	100780000	60099000	40676000	7886	674	7416	15531;15532	38050;38051;38052	38051		3	9606
KWNLDELPK	2	0	Unmodified	1141.6132	0.61315906	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	12	0												1					15.742	15.742	2	0.024729	10117	DP690-12	88.177	20.683			0.62912	0.71724	NaN	1	0	Median	76825000	44280000	32545000	7887	517	7417	15533	38053;38054	38054		2	9606
KWNLDELPKFEK	3	0	Unmodified	1545.8191	0.81912909	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	2	12	0												1					16.695	16.695	3	0.002741	11369	DP690-12	84.734	60.8			0.74839	0.8106	NaN	1	0	Median	66557000	38949000	27608000	7888	517	7418	15534	38055	38055		1	9606
KWQTMIEAHVDVK	2	0	Oxidation (M)	1599.8079	0.80791248	946	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	1	14	0														1			13.357	13.357	3	0.026666	6674	DP690-14	52.101	34.612			0.87814	0.98353	NaN	1	0	Median	61850000	31282000	30568000	7889	946	7419	15535	38056	38056	1464	1	9606
KYAELLEEHR	1	1	Unmodified	1286.6619	0.66190017	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	1	11	0											1						12.183	12.183	3	0.014904	5269	DP690-11	84.687	35.498			NaN	NaN	NaN	0	0	Median	28189000	0	28189000	7890	701	7420	15536	38057	38057		1	9606
KYDAFLASESLIK	2	0	Unmodified	1483.7922	0.79224564	1004	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	1	15	0															2		17.553	17.553	2;3	9.2605E-10	12074	DP690-15	235.31	159.75			0.97771	1.1197	0.36344	2	0	Median	136250000	71692000	64558000	7891	1004	7421	15537;15538	38058;38059;38060;38061;38062;38063	38059		6	9606
KYEDICPSTHNMDVPNIK	2	0	Oxidation (M)	2175.9929	0.99288907	1021	P63241;Q6IS14;Q9GZV4	EIF5A;EIF5AL1;EIF5A2	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2	yes	no	0	1	1	12	4								1								1	13.217	13.217	3	1.4388E-13	6241	DP690-16	183.75	169.5			0.71078	0.80926	14.08	2	0	Median	117540000	68679000	48860000	7892	1021	7422	15539;15540	38064;38065;38066;38067;38068;38069;38070;38071	38067	1549	8	9606
KYEDICPSTHNMDVPNIKR	2	1	Oxidation (M)	2332.094	0.0940001	1021	P63241;Q6IS14;Q9GZV4	EIF5A;EIF5AL1;EIF5A2	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2	yes	no	0	1	2	16	0																1	12.33	12.33	4	0.00039639	5120	DP690-16	108.75	81.077			NaN	NaN	NaN	0	0	Median	24100000	24100000	0	7893	1021	7423	15541	38072;38073	38073	1549	2	9606
KYEEIDNAPEER	1	1	Unmodified	1491.6842	0.68415175	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	5	0					1												11.292	11.292	3	0.046573	3774	DP690-5	46.378	27.101			1.1703	1.2547	NaN	1	0	Median	7104000	3514400	3589600	7894	793	7424	15542	38074	38074		1	9606
KYEFGESDLR	1	1	Unmodified	1242.5881	0.58806652	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								13.691	13.691	2	0.012412	6720	DP690-9	128.35	67.87			NaN	NaN	NaN	0	0	Median	11759000	11759000	0	7895	1264	7425	15543	38075;38076	38075		2	9606
KYEPPVPTR	1	1	Unmodified	1085.5869	0.58694431	965	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	1	4	0				1													10.708	10.708	2	0.013944	3204	DP690-4	94.114	68.22			0.90814	1.0358	NaN	1	0	Median	9459100	4458300	5000800	7896	965	7426	15544	38077;38078	38078		2	9606
KYEQGFITDPVVLSPK	2	0	Unmodified	1819.972	0.97200092	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	1	4	0				2													17.144	17.144	2;3	0.00059202	11287	DP690-4	87.287	57.154			0.753	0.7817	NaN	1	0	Median	27786000	16009000	11778000	7897	474	7427	15545;15546	38079;38080;38081	38079		3	9606
KYGGPPPDSVYSGVQPGIGTEVFVGK	2	0	Unmodified	2634.333	0.33296804	176	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	1	12	0												1					17.825	17.825	3	0.014348	12969	DP690-12	62.722	34.544			NaN	NaN	NaN	0	0	Median	9052700	9052700	0	7898	176	7428	15547	38082	38082		1	9606
KYHIDLDPHFNDILGQHSR	1	1	Unmodified	2304.14	0.13996274	539	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	1	14	0														1			16.326	16.326	5	0.073847	10785	DP690-14	14.733	0.62787			0.6709	0.84508	NaN	1	0	Median	34168000	19795000	14373000	7899	539	7429	15548	38083	38083		0	9606
KYLGQLHYLQSR	1	1	Unmodified	1504.815	0.81504677	2114	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	1	2	0		1															13.278	13.278	3	0.012521	5760	DP690-2	62.338	32.334			0.89466	0.8807	NaN	1	0	Median	4881100	2302800	2578300	7900	2114	7430	15549	38084	38084		1	9606
KYNPTWHCIVGR	1	1	Unmodified	1529.7562	0.75615168	1016;1852	Q96FJ2;P63167	DYNLL2;DYNLL1	Dynein light chain 2, cytoplasmic;Dynein light chain 1, cytoplasmic	no	no	0	0	1	8	0								1									13.228	13.228	3	0.00081619	6123	DP690-8	91.123	66.585			0.72482	0.84277	NaN	1	0	Median	6374200	3599400	2774800	7901	1852;1016	7431	15550	38085;38086;38087	38085		3	9606
KYSPGYNTEVGDK	2	0	Unmodified	1456.6834	0.68342347	314	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	1	14	0														1			10.71	10.71	2	0.0037417	3097	DP690-14	99.539	64.736			1.2943	1.4557	NaN	1	0	Median	16751000	7361600	9389600	7902	314	7432	15551	38088	38088		1	9606
KYTGEDFDEDLR	1	1	Unmodified	1486.6576	0.65760265	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								14.298	14.298	3	0.014464	7548	DP690-9	59.75	36.606			0.89739	1.0408	NaN	1	0	Median	26675000	14275000	12399000	7903	1264	7433	15552	38089;38090	38089		2	9606
KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK	2	0	Oxidation (M)	3241.6428	0.6428108	374	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	1	1	11	4							1								1		19.266	19.266	3	3.8983E-05	14135	DP690-15	62.495	53.2			0.7238	0.81394	NaN	1	0	Median	7097300	5110800	1986500	7904	374	7434	15553;15554	38091;38092;38093;38094;38095;38096;38097	38096	399	7	9606
LAAAFAVSR	0	1	Unmodified	904.51305	0.51305109	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	13	0													1				14.43	14.43	2	0.016746	7900	DP690-13	82.75	35.093			0.76196	0.8797	NaN	1	0	Median	188490000	105150000	83345000	7905	894	7435	15555	38098;38099	38099		2	9606
LAAAVAGPGGLSGSTLVDGR	0	1	Unmodified	1767.9479	0.94791144	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															17.251	17.251	2	0.00064604	10474	DP690-2	93.823	74.546			0.77449	0.79206	NaN	1	0	Median	3314900	1797000	1517900	7906	2418	7436	15556	38100;38101	38100		2	9606
LAAAVFSLAIK	1	0	Unmodified	1102.675	0.67503104	1677	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	0	14	0														1			19.574	19.574	2	0.008535	15095	DP690-14	81.338	60.467			0.81776	0.97994	NaN	1	0	Median	22025000	11960000	10065000	7907	1677	7437	15557	38102;38103	38103		2	9606
LAADDFR	0	1	Unmodified	806.39227	0.39226725	42;40;29;45;388;30;50;27	CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;CON__Q2M2I5;Q2M2I5;CON__O76014;CON__O76015;CON__Q14525;CON__Q497I4;CON__A2A5Y0;CON__Q14532;CON__A2AB72;CON__Q15323;CON__Q9UE12;O76014;Q14532;O76015;Q15323;Q14525;CON__P02533;P02533;CON__A2A4G1;CON__Q04695;Q04695;CON__Q9QWL7;CON__P08779;P08779;CON__P02535-1;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q92764;CON__O76013;CON__REFSEQ:XP_986630;Q92764;O76013;P05783;CON__P05784	KRT10;KRT28;KRT24;KRT37;KRT32;KRT38;KRT31;KRT33B;KRT14;KRT17;KRT16;KRT35;KRT36;KRT18	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 24;Keratin, type I cuticular Ha7;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha8;Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha3-II;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16;Keratin, type I cuticular Ha5;Keratin, type I cuticular Ha6;Keratin, type I cytoskeletal 18	no	no	0	0	0	3.4	2.06	1	1	1	1			1										13.465	13.465	2	0.00017614	5347	DP690-1	148.28	67.283		+	NaN	NaN	NaN	0	0	Median	370810000	370810000	0	7908	42;29;45;40;30;50;27;388	7438	15558;15559;15560;15561;15562	38104;38105;38106;38107;38108;38109;38110;38111;38112	38105		9	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK	2	0	Unmodified	4117.4483	0.44832088	397	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	14	0														1			15.858	15.858	3	2.729E-20	10044	DP690-14	149.29	149.29			NaN	NaN	NaN	0	0	Median	42682000	23933000	18749000	7909	397	7439	15563	38113;38114;38115;38116	38113		4	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK	3	0	Unmodified	4245.5433	0.5432839	397	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	14	0														2			14.504	14.504	3;4	1.4711E-26	8238	DP690-14	164.72	164.72			0.68728	0.70492	13.86	2	0	Median	660600000	357030000	303570000	7910	397	7440	15564;15565	38117;38118;38119;38120;38121;38122	38121		6	9606
LAADFSVPLIIDIK	1	0	Unmodified	1513.8756	0.87558134	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															22.939	22.939	2	0.014172	16579	DP690-2	72.152	72.152			0.70404	0.69235	NaN	1	0	Median	1534600	755040	779600	7911	602	7441	15566	38123;38124;38125;38126	38123		4	9606
LAADTVFVGTAGTVGRPK	1	1	Unmodified	1758.9628	0.96283322	1579	Q86VY4	TSPYL5	Testis-specific Y-encoded-like protein 5	yes	yes	0	0	1	9	4					1								1				15.522	15.522	3	1.6029E-06	9484	DP690-13	130.47	100.34			0.82698	0.93778	27.92	2	0	Median	67477000	30596000	36882000	7912	1579	7442	15567;15568	38127;38128;38129;38130	38128		4	9606
LAAEQELIR	0	1	Unmodified	1041.5819	0.58185893	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	6	4		1								1							14.637	14.637	2	0.00068569	8950	DP690-10	145.16	67.838			0.72729	0.76119	NaN	1	0	Median	226960000	223840000	3116500	7913	1319	7443	15569;15570	38131;38132;38133;38134	38131		4	9606
LAAIGEATR	0	1	Unmodified	900.50288	0.50288033	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								11.995	11.995	2	0.001952	4569	DP690-9	115.49	36.043			0.8408	0.9547	NaN	1	0	Median	94233000	51621000	42611000	7914	1319	7444	15571	38135;38136;38137;38138	38138		4	9606
LAAIIPDPVVAPSIVPVLKDEVDR	1	1	Unmodified	2525.4469	0.44687559	1175	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	1	11	0											1						21.734	21.734	3	0.013076	18968	DP690-11	51.834	51.834			0.57696	0.67956	NaN	1	0	Median	10348000	6068400	4279600	7915	1175	7445	15572	38139	38139		1	9606
LAALNPESNTAGLDIFAK	1	0	Unmodified	1843.968	0.96797818	79	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	7	0							1										20.224	20.224	2	2.1563E-06	14854	DP690-7	136.93	115.38			1.3696	1.4988	NaN	1	0	Median	12298000	5264400	7033300	7916	79	7446	15573	38140;38141	38141		2	9606
LAALPNVYEVISK	1	0	Unmodified	1415.8024	0.8024164	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	8	4.03			3						1	1	1	1	1				20.177	20.177	2	3.264E-05	15297	DP690-3	128.51	105.14			0.79785	0.94691	12.174	5	0	Median	667620000	379730000	287890000	7917	652	7447	15574;15575;15576;15577;15578;15579;15580;15581	38142;38143;38144;38145;38146;38147;38148;38149;38150;38151;38152;38153;38154;38155;38156;38157;38158;38159	38155		18	9606
LAALSASLAR	0	1	Unmodified	971.57638	0.57637963	94	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	12	0												1					15.094	15.094	2	0.0097083	9149	DP690-12	109.11	35.494			NaN	NaN	NaN	0	0	Median	33416000	33416000	0	7918	94	7448	15582	38160	38160		1	9606
LAANSSLFTQR	0	1	Unmodified	1206.6357	0.63568542	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	10	0										1							15.219	15.219	2	0.020572	9921	DP690-10	72.434	27.066			1.2287	1.5277	NaN	1	0	Median	83905000	34936000	48969000	7919	106	7449	15583	38161	38161		1	9606
LAAQENRPVTDHLDEQAVQGLK	1	1	Unmodified	2431.2456	0.24555002	2005	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	1	3	0			1														14.236	14.236	4	0.032752	7640	DP690-3	40.369	17.35			1.2	1.3309	NaN	1	0	Median	17427000	9186900	8240400	7920	2005	7450	15584	38162	38162		1	9606
LAASASTQQLQEVK	1	0	Unmodified	1472.7835	0.78347187	310	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	11	0											1						13.514	13.514	2	1.3713E-16	7215	DP690-11	277.1	242.33			0.69921	0.84724	NaN	1	0	Median	68854000	43506000	25349000	7921	310	7451	15585	38163;38164;38165;38166	38163		4	9606
LAASGEGGLQELSGHFENQK	1	0	Unmodified	2070.997	0.99704647	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	0	12	1.53										1	2	1		2			16.315	16.315	2;3	8.2381E-84	11357	DP690-11	376.68	376.68			0.88025	1.0866	24.071	3	0	Median	2435800000	1284100000	1151700000	7922	1365	7452	15586;15587;15588;15589;15590;15591	38167;38168;38169;38170;38171;38172;38173;38174;38175;38176;38177;38178;38179;38180;38181;38182;38183;38184;38185;38186;38187	38178		21	9606
LAASIAPEIYGHEDVKK	2	0	Unmodified	1839.9731	0.97306355	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	1	11	0											1						14.091	14.091	3	0.0005729	8053	DP690-11	85.469	45.722			0.77477	0.88683	NaN	1	0	Median	112210000	65146000	47063000	7923	653	7453	15592	38188;38189;38190;38191	38189		4	9606
LAATEQYHQVLCPGPSQDDPLHPLNK	1	0	Unmodified	2927.4236	0.42359074	1471	Q6GMV2	SMYD5	SET and MYND domain-containing protein 5	yes	yes	0	0	0	5	0					1												16.001	16.001	4	0.00010095	9289	DP690-5	86.508	68.431			0.68935	0.68668	NaN	1	0	Median	79335000	42447000	36887000	7924	1471	7454	15593	38192;38193;38194;38195;38196;38197	38197		6	9606
LAATNALLNSLEFTK	1	0	Unmodified	1604.8774	0.87737225	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	7	4			1								1						21.005	21.005	2	1.3244E-09	16254	DP690-3	199.82	147.43			1.1415	1.2231	NaN	1	0	Median	39893000	10057000	29836000	7925	1300	7455	15594;15595	38198;38199;38200;38201;38202	38199		5	9606
LAAVALINAAIQK	1	0	Unmodified	1294.7973	0.79727144	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	2	0		1															20.174	20.174	2	0.00037022	13668	DP690-2	111.06	111.06			1.8757	1.865	NaN	1	0	Median	3447500	1326700	2120900	7926	766	7456	15596	38203	38203		1	9606
LAAVDATVNQVLASR	0	1	Unmodified	1526.8417	0.84165545	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	11	4.32					1								1		1		19.047	19.047	2	1.1956E-16	14196	DP690-13	267.07	213.98			0.83179	0.93158	14.179	2	0	Median	772930000	385180000	387740000	7927	1318	7457	15597;15598;15599	38204;38205;38206;38207;38208;38209;38210;38211;38212;38213	38207		10	9606
LAAVQLLQFLAPK	1	0	Unmodified	1410.8599	0.8598717	2253	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	11	0											1						23.895	23.895	2	7.0914E-05	21544	DP690-11	174.41	174.41			0.95085	1.1711	NaN	1	0	Median	11245000	5720200	5525300	7928	2253	7458	15600	38214;38215;38216;38217	38215		4	9606
LAAVTYNGVDNNK	1	0	Unmodified	1377.6888	0.6888432	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	13	0													1				13.382	13.382	2	3.107E-08	6468	DP690-13	202.56	167.29			0.68737	0.79491	NaN	1	0	Median	54804000	28945000	25859000	7929	1351	7459	15601	38218;38219;38220;38221	38219		4	9606
LACDVDQVTR	0	1	Unmodified	1175.5605	0.56047157	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							12.78	12.78	2	5.3247E-05	5512	DP690-9	229.44	163.97			0.74703	0.85767	9.353	2	0	Median	371820000	212550000	159260000	7930	1046	7460	15602;15603	38222;38223;38224;38225;38226;38227;38228;38229;38230	38229		9	9606
LACLSEEGNEIESGK	1	0	Unmodified	1634.7458	0.74576573	2440	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	11	0											1						15.074	15.074	2	0.00016058	9543	DP690-11	150.09	104.19			NaN	NaN	NaN	0	0	Median	32042000	32042000	0	7931	2440	7461	15604	38231;38232	38231		2	9606
LADALQELR	0	1	Unmodified	1027.5662	0.56620887	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.5	0.5											1	1					16.336	16.336	2	0.00011747	10846	DP690-12	185.55	70.767			0.79375	0.87845	5.0507	2	0	Median	604150000	340500000	263650000	7932	359	7462	15605;15606	38233;38234;38235;38236;38237;38238;38239;38240;38241;38242	38242		10	9606
LADDSEPTVR	0	1	Unmodified	1101.5302	0.5302173	1729	Q8TF05	PPP4R1	Serine/threonine-protein phosphatase 4 regulatory subunit 1	yes	yes	0	0	0	3	0			1														11.498	11.498	2	0.010989	3995	DP690-3	82.279	48.19			0.96643	1.0735	NaN	1	0	Median	5684200	3297900	2386300	7933	1729	7463	15607	38243	38243		1	9606
LADELHMPSLPEMMFGDNVLR	0	1	3 Oxidation (M)	2462.128	0.12800234	270	O75663	TIPRL	TIP41-like protein	yes	yes	0	3	0	7	0							1										18.048	18.048	3	0.036282	12132	DP690-7	43.81	29.187			1.2411	1.425	NaN	1	0	Median	18074000	8328700	9745200	7934	270	7464	15608	38244	38244	280;281;282	0	9606
LADFGLAR	0	1	Unmodified	861.47085	0.47085192	391;580;824;1072	P06493;Q00535;P11802;O94921;Q07002;Q00536;Q00537;Q9NYV4;Q14004;P24941;Q00526;P50750;Q00534	CDK1;CDK5;CDK4;CDK14;CDK18;CDK16;CDK17;CDK12;CDK13;CDK2;CDK3;CDK9;CDK6	Cyclin-dependent kinase 1;Cyclin-dependent-like kinase 5;Cyclin-dependent kinase 4;Cyclin-dependent kinase 14;Cyclin-dependent kinase 18;Cyclin-dependent kinase 16;Cyclin-dependent kinase 17;Cyclin-dependent kinase 12;Cyclin-dependent kinase 13;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3;Cyclin-dependent kinase 9;Cyclin-dependent kinase 6	no	no	0	0	0	9.5	2.5							1					1					15.921	15.921	2	0.035486	9551	DP690-7	102.77	0			0.8281	0.93283	NaN	1	0	Median	214620000	125640000	88984000	7935	391;580;824;1072	7465	15609;15610	38245;38246	38246		1	9606
LADFGVAGQLTDTQIKR	1	1	Unmodified	1831.9792	0.97921156	2518	Q9Y6E0;Q9P289;O00506	STK24;STK26;STK25	Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25	yes	no	0	0	1	13	0													1				16.867	16.867	3	0.00036809	11376	DP690-13	90.259	67.629			1.013	1.2256	NaN	1	0	Median	34911000	16672000	18239000	7936	2518	7466	15611	38247	38247		1	9606
LADKVNSSWQR	1	1	Unmodified	1302.668	0.66804818	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	1	7	0							1										11.64	11.64	3	0.00082207	4291	DP690-7	102.95	77.658			0.6991	0.73683	NaN	1	0	Median	73609000	44501000	29108000	7937	296	7467	15612	38248;38249;38250	38250		3	9606
LADLFGWSQLIYNHITTR	0	1	Unmodified	2147.1164	0.11637375	671	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	11	0											1						23.547	23.547	3	0.0019499	21118	DP690-11	100.27	75.373			NaN	NaN	NaN	0	0	Median	2206200	2206200	0	7938	671	7468	15613	38251	38251		1	9606
LADMHSTEISLQQR	0	1	Oxidation (M)	1643.7937	0.79371898	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	1	0	8	3.56			1							1	1						12.721	12.721	2;3	4.5554E-05	6228	DP690-10	130.44	104.32			1.0451	1.2514	11.065	2	0	Median	68428000	35697000	32731000	7939	272	7469	15614;15615;15616	38252;38253;38254;38255;38256;38257	38252	292	6	9606
LADPVTPVETILQR	0	1	Unmodified	1550.8668	0.86680757	2236	Q9NVN8	GNL3L	Guanine nucleotide-binding protein-like 3-like protein	yes	yes	0	0	0	12	0												1					19.824	19.824	2	0.00020181	15694	DP690-12	117.25	117.25			0.86848	1.0585	NaN	1	0	Median	8356900	4908500	3448500	7940	2236	7470	15617	38258	38258		1	9606
LADQCTGLQGFLVFHSFGGGTGSGFTSLLMER	0	1	Unmodified	3389.6173	0.61728152	1032;1521;1977	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	13	0													1				23.612	23.612	3	2.3527E-29	19788	DP690-13	183.12	169.6			1.0164	1.2382	NaN	1	0	Median	11046000	5182000	5864100	7941	1032;1521;1977	7471	15618	38259;38260;38261;38262	38260		4	9606
LADQCTGLQGFLVFHSFGGGTGSGFTSLLMER	0	1	Oxidation (M)	3405.6122	0.61219615	1032;1521;1977	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	0	5	0					1												23.112	23.112	3	9.3139E-08	18121	DP690-5	98.225	98.225			1.1274	1.1766	NaN	1	0	Median	46827000	20465000	26363000	7942	1032;1521;1977	7471	15619	38263;38264;38265;38266	38266	1571	4	9606
LAEDEAFQR	0	1	Unmodified	1077.5091	0.50908792	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							13.286	13.286	2	0.0038473	6218	DP690-9	104.44	38.765			0.68799	0.77345	8.0923	2	0	Median	551720000	346150000	205580000	7943	1319	7472	15620;15621	38267;38268;38269	38269		3	9606
LAEDEAFQRR	0	2	Unmodified	1233.6102	0.61019895	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								11.735	11.735	3	0.070799	4168	DP690-9	39.305	12.416			0.80184	0.86916	NaN	1	0	Median	20711000	10463000	10248000	7944	1319	7473	15622	38270	38270		1	9606
LAEGVQLLCLIDK	1	0	Unmodified	1470.8116	0.81160087	2060	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	11	0											1						21.585	21.585	2	0.00093145	18750	DP690-11	115.33	79.785			1.2644	1.5631	NaN	1	0	Median	16361000	7295500	9065600	7945	2060	7474	15623	38271;38272;38273;38274	38271		4	9606
LAEISDVWEEMK	1	0	Oxidation (M)	1464.6806	0.68064628	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										1							17.883	17.883	2	0.0096713	13754	DP690-10	103.26	59.958			NaN	NaN	NaN	0	0	Median	27111000	27111000	0	7946	1080	7475	15624	38275	38275	1694	1	9606
LAELEEALQK	1	0	Unmodified	1142.6183	0.61830402	43	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	1	0	1																16.208	16.208	2	3.6956E-10	7710	DP690-1	180.87	73.862		+	NaN	NaN	NaN	0	0	Median	3340800	3340800	0	7947	43	7476	15625	38276;38277	38276		2	9606
LAELEEFINGPNNAHIQQVGDR	0	1	Unmodified	2463.2142	0.21424989	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	7.67	4.03		1								1	1						18.409	18.409	3	1.1746E-06	11788	DP690-2	127.49	98.105			0.67083	0.79181	NaN	1	0	Median	278530000	167760000	110770000	7948	1075	7477	15626;15627;15628	38278;38279;38280;38281;38282;38283	38283		6	9606
LAELEGALQK	1	0	Unmodified	1070.5972	0.59717465	26	CON__O43790;CON__Q14533;O43790;Q14533;CON__Q6NT21;CON__P78385;CON__P78386;A6NCN2;P78385;P78386;CON__Q61726	KRT86;KRT81;KRT87P;KRT83;KRT85	Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb1;Putative keratin-87 protein;Keratin, type II cuticular Hb3;Keratin, type II cuticular Hb5	yes	no	0	0	0	15	0															1		14.958	14.958	2	8.8271E-05	8812	DP690-15	158.07	59.445		+	0.86192	1.0111	NaN	1	0	Median	34745000	19161000	15585000	7949	26	7478	15629	38284;38285	38284		2	9606
LAELLTQQHGLQCR	0	1	Unmodified	1665.8621	0.86207332	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	11	0											1						14.708	14.708	3	8.0414E-06	8928	DP690-11	148.18	112.35			1.006	1.1431	NaN	1	0	Median	224650000	109340000	115300000	7950	2127	7479	15630	38286;38287	38287		2	9606
LAELSDYRR	0	2	Unmodified	1121.5829	0.58292157	1910	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	1	11.5	0.5											1	1					12.529	12.529	3	0.0017319	5527	DP690-12	119.27	25.901			NaN	NaN	NaN	0	0	Median	13594000	0	13594000	7951	1910	7480	15631;15632	38288;38289;38290;38291	38291		4	9606
LAEMPADSGYPAYLGAR	0	1	Unmodified	1780.8454	0.8454202	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	12	0												1					17.847	17.847	2	4.5435E-06	13033	DP690-12	132.17	114.43			1.1184	1.3503	NaN	1	0	Median	16531000	8642500	7888600	7952	694	7481	15633	38292;38293	38292		2	9606
LAEMPADSGYPAYLGAR	0	1	Oxidation (M)	1796.8403	0.84033482	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	1	0	8	4				1								1					16.498	16.498	2	0.0020358	10510	DP690-4	90.697	74.167			0.73053	0.84565	NaN	1	0	Median	4774300	2630000	2144300	7953	694	7481	15634;15635	38294;38295	38295	1003	2	9606
LAEMSLEQDNIK	1	0	Oxidation (M)	1405.6759	0.67589525	2504	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	1	0	11	0											1						13.785	13.785	2	0.012903	7664	DP690-11	78.513	21.597			0.50696	0.61252	NaN	1	0	Median	46996000	34882000	12114000	7954	2504	7482	15636	38296	38296	2935	1	9606
LAENIDAQLKR	1	1	Unmodified	1269.7041	0.70409934	688	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	1	12	0												1					13.095	13.095	3	3.4132E-05	6303	DP690-12	134.84	81.093			0.8946	1.0446	NaN	1	0	Median	104900000	53788000	51116000	7955	688	7483	15637	38297;38298;38299;38300	38299		4	9606
LAEQAERYDDMATCMK	1	1	2 Oxidation (M)	1962.8121	0.81214751	599	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	2	1	15	0															1		11.809	11.809	3	0.0053276	4472	DP690-15	65.219	56.727			0.76728	0.88218	NaN	1	0	Median	32712000	17411000	15301000	7956	599	7484	15638	38301;38302;38303;38304	38304	799;800	4	9606
LAESSVDLNLK	1	0	Unmodified	1187.6398	0.63976774	318	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	4	0				2													15.675	15.675	2	0.026937	9477	DP690-4	94.692	35.447			NaN	NaN	NaN	0	0	Median	0	0	0	7957	318	7485	15639;15640	38305;38306	38306		2	9606
LAETVFNFQEK	1	0	Unmodified	1324.6663	0.66631685	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								17.768	17.768	2	5.3618E-05	12110	DP690-9	157.34	100.78			NaN	NaN	NaN	0	0	Median	8635500	8635500	0	7958	1264	7486	15641	38307;38308	38308		2	9606
LAEVEAALEK	1	0	Unmodified	1071.5812	0.58119023	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							14.955	14.955	2	8.9306E-05	8376	DP690-9	156.35	52.29			0.82666	0.92192	0.79568	2	0	Median	639860000	341980000	297870000	7959	1319	7487	15642;15643	38309;38310;38311;38312;38313;38314;38315	38313		7	9606
LAFHGILLHGLEDR	0	1	Unmodified	1589.8678	0.86781062	914	P57772	EEFSEC	Selenocysteine-specific elongation factor	yes	yes	0	0	0	12	0												1					17.236	17.236	4	0.030665	12262	DP690-12	68.277	33.16			NaN	NaN	NaN	0	0	Median	4868200	4868200	0	7960	914	7488	15644	38316	38316		1	9606
LAFLNVQAAEEALPR	0	1	Unmodified	1640.8886	0.88860564	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	11.5	0.5											1	1					21.149	21.149	2	1.0483E-09	18127	DP690-11	202.65	202.65			0.53409	0.64586	6.5791	2	0	Median	37115000	24418000	12697000	7961	737	7489	15645;15646	38317;38318;38319;38320;38321	38318		5	9606
LAGANPAVITCDELLLGHEK	1	0	Unmodified	2120.0936	0.093589394	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	6	4		1								1							18.337	18.337	3	6.3927E-18	14368	DP690-10	187.5	167.82			0.97565	1.0346	12.754	2	0	Median	472780000	264040000	208740000	7962	1046	7490	15647;15648	38322;38323;38324;38325;38326	38323		5	9606
LAGAQQVQTQIQVAK	1	0	Unmodified	1581.8839	0.88385462	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	9	0									1								14.36	14.36	2	0.00016805	7709	DP690-9	119.27	97.494			0.96057	1.1991	NaN	1	0	Median	5012500	3017000	1995500	7963	1891	7491	15649	38327	38327		1	9606
LAGEGATVAACDLDR	0	1	Unmodified	1517.7144	0.71440603	1770	Q92506	HSD17B8	Estradiol 17-beta-dehydrogenase 8	yes	yes	0	0	0	15	0															1		14.761	14.761	2	0.010582	8494	DP690-15	103.46	46.114			NaN	NaN	NaN	0	0	Median	5402800	0	5402800	7964	1770	7492	15650	38328;38329	38329		2	9606
LAGESESNLR	0	1	Unmodified	1074.5306	0.53055165	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	3	0			1														11.086	11.086	2	0.05685	3493	DP690-3	85.862	28.003			NaN	NaN	NaN	0	0	Median	10014000	0	10014000	7965	893	7493	15651	38330;38331	38330		2	9606
LAGFLDLTEQEFR	0	1	Unmodified	1537.7777	0.77765821	2429	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	12	0												1					21.716	21.716	2	0.00016982	18026	DP690-12	157.97	110.03			0.91321	1.1126	NaN	1	0	Median	9125700	4731000	4394700	7966	2429	7494	15652	38332;38333;38334;38335	38334		4	9606
LAGGDWFTSR	0	1	Unmodified	1108.5302	0.53015772	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	4	0				1													17.427	17.427	2	8.9862E-05	11648	DP690-4	155.42	51.052			1.81	2.0532	NaN	1	0	Median	25733000	8644400	17088000	7967	624	7495	15653	38336;38337;38338;38339	38336		4	9606
LAGHWEVALYK	1	0	Unmodified	1285.6819	0.68190733	2335	Q9UG56	PISD	Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain	yes	yes	0	0	0	14	0														1			15.908	15.908	3	0.013938	10137	DP690-14	65.278	65.278			0.82652	1.0027	NaN	1	0	Median	34162000	20976000	13186000	7968	2335	7496	15654	38340;38341;38342	38342		3	9606
LAGPQLVQMFIGDGAK	1	0	Unmodified	1643.8705	0.87051274	519	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	5	0					1												22.372	22.372	2	0.013018	17279	DP690-5	114.72	64.428			NaN	NaN	NaN	0	0	Median	0	0	0	7969	519	7497	15655	38343	38343		1	9606
LAGQLESMNDVEELTALLR	0	1	Unmodified	2101.0725	0.072519601	881	P53814	SMTN	Smoothelin	yes	yes	0	0	0	11	0											2						24.059	24.059	2	0.027877	21874	DP690-11	94.461	61.963			NaN	NaN	NaN	0	0	Median	2261700	2261700	0	7970	881	7498	15656;15657	38344;38345	38345		2	9606
LAGTQPLEVLEAVQR	0	1	Unmodified	1622.8992	0.89917033	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														20.049	20.049	2	1.1568E-06	15163	DP690-3	182.71	150.5			0.66918	0.75542	NaN	1	0	Median	30359000	20715000	9644000	7971	561	7499	15658	38346	38346		1	9606
LAHEIEALK	1	0	Unmodified	1022.576	0.57604528	194	O43847	NRD1	Nardilysin	yes	yes	0	0	0	3	0			1														12.349	12.349	2	0.072423	5144	DP690-3	60.478	60.478			0.88579	0.9314	NaN	1	0	Median	7263800	4397500	2866300	7972	194	7500	15659	38347	38347		1	9606
LAILGIHNEVSK	1	0	Unmodified	1292.7452	0.74523587	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	7	4			1								1						15.21	15.21	3	0.00047242	9691	DP690-11	101.35	81.568			1.2069	1.3024	48.705	2	0	Median	316640000	163110000	153530000	7973	476	7501	15660;15661	38348;38349;38350;38351;38352;38353;38354;38355;38356;38357;38358	38352		11	9606
LAILQVGNR	0	1	Unmodified	982.59236	0.59236404	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7	4			1								1						16.128	16.128	2	0.00055394	11045	DP690-11	148.33	52.534			0.87653	0.97963	5.1358	2	0	Median	291830000	151780000	140050000	7974	470	7502	15662;15663	38359;38360;38361;38362;38363;38364;38365	38359		7	9606
LAIWDTAGQER	0	1	Unmodified	1258.6306	0.63060004	2175	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	10	3.56							1	1							1		16.871	16.871	2	0.0045641	10193	DP690-8	89.047	28.137			0.9523	1.1146	6.8475	2	0	Median	25853000	11060000	14794000	7975	2175	7503	15664;15665;15666	38366;38367;38368	38368		3	9606
LAIYGMLPK	1	0	Oxidation (M)	1020.5678	0.56778878	2049	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	yes	yes	0	1	0	16	0																1	16.377	16.377	2	0.032953	10337	DP690-16	79.597	48.523			0.76557	0.89643	NaN	1	0	Median	13681000	7774900	5905700	7976	2049	7504	15667	38369;38370	38370	2570	2	9606
LALAGIGQPVKK	2	0	Unmodified	1193.7496	0.74959297	2396	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	1	11	0											1						13.811	13.811	3	0.042374	7607	DP690-11	48.004	25.442			2.5258	2.9664	NaN	1	0	Median	52772000	15880000	36893000	7977	2396	7505	15668	38371;38372;38373	38371		3	9606
LALASLGYEK	1	0	Unmodified	1063.5914	0.59136099	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			1														16.703	16.703	2	0.0020847	10899	DP690-3	101.65	60.198			0.82149	0.86891	NaN	1	0	Median	35901000	19647000	16253000	7978	1739	7506	15669	38374;38375	38374		2	9606
LALDGQNIYNACCTLR	0	1	Unmodified	1880.8873	0.88730179	2368	Q9UKA9	PTBP2	Polypyrimidine tract-binding protein 2	yes	yes	0	0	0	12	0												4					17.949	17.949	2	7.858E-05	13122	DP690-12	168.83	115.26			NaN	NaN	NaN	0	0	Median	8420600	0	8420600	7979	2368	7507	15670;15671;15672;15673	38376;38377;38378;38379;38380	38378		5	9606
LALDLEIATYR	0	1	Unmodified	1276.7027	0.70270235	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	4	3.56	1	1							1								19.931	19.931	2	5.767299999999999E-44	14716	DP690-9	258.47	0		+	NaN	NaN	NaN	0	0	Median	33643000	33643000	0	7980	369	7508	15674;15675;15676	38381;38382;38383;38384;38385;38386	38385		6	9606
LALDMEIHAYR	0	1	Unmodified	1330.6704	0.67035637	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11	0											1						16.677	16.677	3	0.00062192	11863	DP690-11	99.568	64.045			0.6887	0.82724	NaN	1	0	Median	66392000	41820000	24571000	7981	359	7509	15677	38387;38388;38389	38387		3	9606
LALDMEIHAYR	0	1	Oxidation (M)	1346.6653	0.66527099	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	1	0	12	0												3					15.223	15.223	3	0.00024662	9287	DP690-12	110.53	59.282			0.33416	0.39204	NaN	1	0	Median	92032000	77035000	14997000	7982	359	7509	15678;15679;15680	38390;38391;38392;38393	38391	370	4	9606
LALDVEIATYR	0	1	Unmodified	1262.6871	0.68705229	44;43;31;368;25	P35908;CON__P35908v2;CON__P35908;Q01546;CON__Q01546;CON__P07744;CON__REFSEQ:XP_932229;CON__P02538;P02538;CON__P48668;P48668;CON__P13647;P13647;P04259;CON__ENSEMBL:ENSBTAP00000038253	KRT2;KRT76;KRT6A;KRT6C;KRT5;KRT6B	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6B	no	no	0	0	0	3.5	1.5		1			1												18.949	18.949	2	0.0016299	13006	DP690-5	138.08	70.586		+	NaN	NaN	NaN	0	0	Median	2076900	2076900	0	7983	44;31;43;368;25	7510	15681;15682	38394;38395	38395		2	9606
LALESICLLLGESTTDWK	1	0	Unmodified	2048.05	0.049993245	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								24.337	24.337	2	0.021488	19870	DP690-9	58.32	58.32			1.1062	1.2927	NaN	1	0	Median	1284900	630630	654290	7984	1264	7511	15683	38396	38396		1	9606
LALGIPLPELR	0	1	Unmodified	1190.7387	0.73869393	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															21.425	21.425	2	0.00049446	14973	DP690-2	113.71	113.71			1.0899	1.1379	NaN	1	0	Median	15205000	7203400	8001700	7985	602	7512	15684	38397;38398;38399;38400;38401;38402;38403;38404	38398		8	9606
LALGSFVEEYNNK	1	0	Unmodified	1482.7355	0.73545904	956	P61962	DCAF7	DDB1- and CUL4-associated factor 7	yes	yes	0	0	0	14	0														1			18.854	18.854	2	4.919E-07	14084	DP690-14	167.67	121.22			NaN	NaN	NaN	0	0	Median	37647000	37647000	0	7986	956	7513	15685	38405;38406	38406		2	9606
LALLHEGTGPR	0	1	Unmodified	1162.6459	0.64585618	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							12.94	12.94	3	0.014957	6567	DP690-10	64.224	64.224			0.89864	1.1189	NaN	1	0	Median	21500000	13569000	7931200	7987	2424	7514	15686	38407	38407		1	9606
LALPGHAESYNPPPEYLLSEEER	0	1	Unmodified	2610.2602	0.26019703	1247	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	11	0											3						18.15	18.15	3	0.0025065	13907	DP690-11	88.945	51.566			NaN	NaN	NaN	0	0	Median	22618000	22618000	0	7988	1247	7515	15687;15688;15689	38408;38409;38410	38408		3	9606
LALQEEPDHSK	1	0	Unmodified	1265.6252	0.62518031	823	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	2	0		1															10.845	10.845	3	0.0034516	3005	DP690-2	77.288	55.937			1.1208	1.1164	NaN	1	0	Median	3667800	1569100	2098700	7989	823	7516	15690	38411;38412	38411		2	9606
LALQQDLTSMAPGLVIQAVR	0	1	Unmodified	2123.1773	0.17725944	297	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	14	0														1			22.617	22.617	2	0.0011031	18835	DP690-14	88.706	88.706			0.91871	1.154	NaN	1	0	Median	4263800	2211100	2052700	7990	297	7517	15691	38413	38413		1	9606
LALSQAHSLVQAEAPR	0	1	Unmodified	1689.9162	0.91621738	1991	Q9BSF4	C19orf52	Uncharacterized protein C19orf52	yes	yes	0	0	0	15	0															2		15.29	15.29	2;3	2.022E-07	9163	DP690-15	152.34	133.52			0.767	0.86578	16.225	2	0	Median	107880000	56926000	50958000	7991	1991	7518	15692;15693	38414;38415;38416;38417;38418	38416		5	9606
LALSQNQQSSGAAGPTGK	1	0	Unmodified	1713.8646	0.86457574	309	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	0	9.6	3.14				1					1	1		1	1				12.02	12.02	2	4.7968E-33	4834	DP690-12	300.49	232.13			0.84778	0.99591	2.8335	3	0	Plateau	47766000	25344000	22422000	7992	309	7519	15694;15695;15696;15697;15698	38419;38420;38421;38422;38423;38424;38425;38426;38427;38428;38429;38430;38431;38432	38423		14	9606
LALSQNQQSSGAAGPTGKNEEK	2	0	Unmodified	2214.0877	0.087652394	309	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	1	12	0												1					10.69	10.69	3	0.055049	3141	DP690-12	97.621	61.995			NaN	NaN	NaN	0	0	Median	9178800	9178800	0	7993	309	7520	15699	38433	38433		1	9606
LALTMDLAPLLLAAR	0	1	Oxidation (M)	1596.9273	0.92729933	1490	Q6P1X6	C8orf82	UPF0598 protein C8orf82	yes	yes	0	1	0	7	0							1										23.16	23.16	2	0.0043249	18214	DP690-7	87.184	36.831			0.60967	0.69897	NaN	1	0	Median	6398100	3793000	2605100	7994	1490	7521	15700	38434;38435;38436;38437	38434	2176	4	9606
LAMLVGR	0	1	Oxidation (M)	774.44219	0.44219433	2217	Q9NU22	MDN1	Midasin	yes	yes	0	1	0	14	0														1			17.035	17.035	2	0.018822	11770	DP690-14	119.23	15.95			NaN	NaN	NaN	0	0	Median	5097400	5097400	0	7995	2217	7522	15701	38438;38439	38438	2697	2	9606
LAMQEFMILPVGAANFR	0	1	Oxidation (M)	1922.9747	0.97466023	395	P06733	ENO1	Alpha-enolase	yes	yes	0	1	0	5	0					1												21.523	21.523	2	4.5905E-07	16302	DP690-5	147.96	109.38			1.2968	1.3551	NaN	1	0	Median	9536200	4278500	5257700	7996	395	7523	15702	38440;38441;38442	38440	422;423	3	9606
LAMQEFMILPVGAANFR	0	1	Unmodified	1906.9797	0.97974561	395	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	5	0					1												23.242	23.242	2	0.00078844	18346	DP690-5	96.067	72.318			1.3538	1.4067	NaN	1	0	Median	4528000	1639300	2888700	7997	395	7523	15703	38443;38444	38444		2	9606
LAMQEFMILPVGAANFR	0	1	2 Oxidation (M)	1938.9696	0.96957485	395	P06733	ENO1	Alpha-enolase	yes	yes	0	2	0	5	0					1												20.52	20.52	2	0.008863	15029	DP690-5	96.334	67.95			NaN	NaN	NaN	0	0	Median	7272800	7272800	0	7998	395	7523	15704	38445;38446	38445	422;423	2	9606
LAMQLEEQASR	0	1	Oxidation (M)	1290.6238	0.6238001	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	1	0	7	4			1								1						12.598	12.598	2	0.00012209	5829	DP690-11	144.65	90.493			0.95418	1.0919	3.6578	2	0	Median	147920000	69818000	78105000	7999	1950	7524	15705;15706	38447;38448;38449;38450;38451	38448	2484	5	9606
LAMQLEEQASR	0	1	Unmodified	1274.6289	0.62888548	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11	0											1						14.636	14.636	2	2.7902E-06	8825	DP690-11	202.2	202.2			0.82599	0.94544	NaN	1	0	Median	204460000	116510000	87943000	8000	1950	7524	15707	38452;38453;38454;38455	38453		4	9606
LANIDEEMLQK	1	0	Oxidation (M)	1318.6439	0.64386684	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	8	4				1								1					13.998	13.998	2	0.00032107	7251	DP690-4	123.35	123.35			1.1146	1.2158	NaN	1	0	Median	54071000	44461000	9610400	8001	886	7525	15708;15709	38456;38457;38458;38459;38460;38461	38461	1346	6	9606
LANLAATICSWEDDVNHSFAK	1	0	Unmodified	2361.1059	0.10594499	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.5	0.5										1	1						22.594	22.594	3	1.8917E-05	20032	DP690-11	122.83	106.17			1.0623	1.3039	NaN	1	0	Median	38772000	27678000	11093000	8002	2190	7526	15710;15711	38462;38463;38464	38464		3	9606
LANLINAEERR	0	2	Unmodified	1297.7102	0.71024735	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	1	12	0												1					15.014	15.014	3	0.067931	8983	DP690-12	39.179	16.167			1.2342	1.3994	NaN	1	0	Median	56931000	28022000	28909000	8003	858	7527	15712	38465	38465		1	9606
LANLPEEVIQK	1	0	Unmodified	1252.7027	0.70270235	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	10	0										1							16.306	16.306	2	0.0013968	11465	DP690-10	103.26	82.968			0.77454	0.9565	NaN	1	0	Median	133020000	73387000	59636000	8004	858	7528	15713	38466;38467;38468;38469	38467		4	9606
LANQAADYFGDAFK	1	0	Unmodified	1529.7151	0.71505795	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			3														19.004	19.004	2	0.0030893	13868	DP690-3	131.37	60.684			NaN	NaN	NaN	0	0	Median	0	0	0	8005	1739	7529	15714;15715;15716	38470;38471;38472	38471		3	9606
LANQFAIYKPVTDFFLQLVDAGK	2	0	Unmodified	2597.3894	0.38936071	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	10.3	0.471										2	1						25.729	25.729	3	4.737E-10	23872	DP690-10	148.64	148.64			0.63438	0.73469	31.455	3	0	Median	11850000	6973800	4875900	8006	732	7530	15717;15718;15719	38473;38474;38475;38476;38477	38473		5	9606
LAPALATGNTVVMK	1	0	Oxidation (M)	1400.7697	0.76973606	629	P30837	ALDH1B1	Aldehyde dehydrogenase X, mitochondrial	yes	yes	0	1	0	4	0				1													14.265	14.265	2	0.0068358	7562	DP690-4	84.658	84.658			0.82995	0.89274	NaN	1	0	Median	5766500	3411200	2355300	8007	629	7531	15720	38478;38479;38480;38481	38479	868	4	9606
LAPALPAWPHR	0	1	Unmodified	1227.6877	0.68766141	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	13	0													1				16.334	16.334	3	0.0021262	10563	DP690-13	85.807	73.453			0.50111	0.61815	NaN	1	0	Median	20376000	11602000	8774600	8008	1906	7532	15721	38482;38483	38482		2	9606
LAPDYDALDVANK	1	0	Unmodified	1403.6933	0.69325988	988	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	13	3.56								1							1	1	16.75	16.75	2	6.0946E-05	11142	DP690-15	132.32	89.981			0.78626	0.8684	2.1381	3	0	Plateau	384210000	204530000	179680000	8009	988	7533	15722;15723;15724	38484;38485;38486;38487;38488;38489;38490;38491	38484		8	9606
LAPEYEAAATR	0	1	Unmodified	1190.5932	0.5931519	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	4	0				1													12.937	12.937	2	0.0024196	5764	DP690-4	94.409	73.462			0.96337	1.0554	NaN	1	0	Median	52210000	26084000	26126000	8010	623	7534	15725	38492;38493	38493		2	9606
LAPITSDPTEATAVGAVEASFK	1	0	Unmodified	2174.1107	0.11067925	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	8	4				1								1					21.038	21.038	2	1.9689E-23	15827	DP690-4	242.41	242.41			0.78474	0.85491	NaN	1	0	Median	13542000	9085500	4456800	8011	488	7535	15726;15727	38494;38495;38496;38497;38498;38499	38498		6	9606
LAPPLVTLLSAEPELQYVALR	0	1	Unmodified	2292.3093	0.30931947	1152	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	11	0											1						25.528	25.528	2	7.7518E-10	23470	DP690-11	154.65	154.65			0.64477	0.79597	NaN	1	0	Median	10913000	6624700	4288600	8012	1152	7536	15728	38500;38501;38502;38503;38504	38504		5	9606
LAPPLVTLLSGEPEVQYVALR	0	1	Unmodified	2264.278	0.27801935	1013	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	11	0											1						24.409	24.409	2	2.0172E-08	22190	DP690-11	157.2	119.41			NaN	NaN	NaN	0	0	Median	1716100	1716100	0	8013	1013	7537	15729	38505	38505		1	9606
LAQAHPAGPPTLDPVNDLQLK	1	0	Unmodified	2194.1746	0.17461691	1335	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	10	0										1							17.256	17.256	3	0.0026874	12821	DP690-10	65.16	48.229			0.42215	0.51895	NaN	1	0	Median	44911000	34562000	10349000	8014	1335	7538	15730	38506	38506		1	9606
LAQALHEMR	0	1	Unmodified	1067.5546	0.55459833	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												2					10.863	10.863	3	0.0045605	3381	DP690-12	104.01	47.58			NaN	NaN	NaN	0	0	Median	2425800	0	2425800	8015	544	7539	15731;15732	38507;38508;38509	38507		3	9606
LAQALHEMREQHDAQVR	0	2	Oxidation (M)	2047.0018	0.0017546946	544	P20700	LMNB1	Lamin-B1	yes	yes	0	1	1	10.5	1.5									1			1					10.216	10.216	5	0.0018717	2481	DP690-12	72.523	72.523			0.82096	0.91013	5.3775	2	0	Median	139630000	74956000	64672000	8016	544	7540	15733;15734	38510;38511;38512	38510	695	3	9606
LAQAWFNTHR	0	1	Unmodified	1242.6258	0.62578944	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	12	0												1					14.224	14.224	3	0.0023108	7951	DP690-12	72.096	48.342			0.68931	0.80193	NaN	1	0	Median	108790000	67165000	41625000	8017	1814	7541	15735	38513;38514	38513		2	9606
LAQDPFPLYPGEVLEK	1	0	Unmodified	1814.9455	0.94545182	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														20.769	20.769	2	0.00093765	16075	DP690-3	95.651	70.686			0.6094	0.64314	NaN	1	0	Median	8591800	5518000	3073800	8018	1293	7542	15736	38515;38516;38517	38515		3	9606
LAQEGIYTLYPFINSR	0	1	Unmodified	1883.9781	0.97814893	1141	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	11	0											1						21.514	21.514	2	0.0088184	18639	DP690-11	72.496	46.604			0.70508	0.86591	NaN	1	0	Median	14884000	7422200	7461400	8019	1141	7543	15737	38518	38518		1	9606
LAQFEPSQR	0	1	Unmodified	1074.5458	0.54580778	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	11	0											1						12.694	12.694	2	0.020944	5962	DP690-11	78.516	53.379			0.77541	0.93342	NaN	1	0	Median	76956000	43386000	33570000	8020	1137	7544	15738	38519;38520	38519		2	9606
LAQGHTTVDELAR	0	1	Unmodified	1409.7263	0.72629134	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.4	1.85									2	2				1			12.077	12.077	2;3	1.0239E-10	5254	DP690-10	218.55	185.36			0.83279	0.97245	7.6022	4	0	Median	1082300000	575520000	506750000	8021	1319	7545	15739;15740;15741;15742;15743	38521;38522;38523;38524;38525;38526;38527;38528;38529;38530;38531;38532;38533;38534;38535	38525		15	9606
LAQHVKPEEHEQVK	2	0	Unmodified	1670.874	0.87401821	2058	Q9BZF9	UACA	Uveal autoantigen with coiled-coil domains and ankyrin repeats	yes	yes	0	0	1	10	0										1							10.227	10.227	4	0.0075003	2544	DP690-10	67.118	45.698			0.52235	0.61405	NaN	1	0	Median	11538000	6381600	5156100	8022	2058	7546	15744	38536;38537	38537		2	9606
LAQLAGDHECGSSSQR	0	1	Unmodified	1714.7693	0.76929514	2448	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	11.5	0.5											1	1					10.485	10.485	3	0.00036385	2747	DP690-12	92.8	71.355			0.85922	1.0159	4.0646	2	0	Median	180080000	95056000	85026000	8023	2448	7547	15745;15746	38538;38539	38539		2	9606
LAQLEAALQQAK	1	0	Unmodified	1282.7245	0.72450043	52	Q6KB66;CON__Q6KB66-1	KRT80	Keratin, type II cytoskeletal 80	yes	no	0	0	0	13	0													1				16.62	16.62	2	0.00029555	10964	DP690-13	147.4	16.182		+	NaN	NaN	NaN	0	0	Median	22008000	22008000	0	8024	52	7548	15747	38540;38541	38541		2	9606
LAQNILSYLDLK	1	0	Unmodified	1389.7868	0.78676633	2382	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	yes	yes	0	0	0	11	3.46					1								3				21.999	21.999	2	0.0002208	17939	DP690-13	156.16	156.16			0.98268	1.0571	45.245	2	0	Median	20519000	7149200	13370000	8025	2382	7549	15748;15749;15750;15751	38542;38543;38544;38545;38546;38547;38548	38543		7	9606
LAQQMENRPSVQAALK	1	1	Oxidation (M)	1798.936	0.93596654	2479	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	1	15	0															1		12.012	12.012	3	0.00018189	4697	DP690-15	106.29	82.209			0.82867	0.94937	NaN	1	0	Median	36605000	21198000	15407000	8026	2479	7550	15752	38549;38550	38550	2920	2	9606
LAQQQAALLMQQEER	0	1	Unmodified	1755.8938	0.89376737	1210	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	11	0											1						16.346	16.346	2	0.0087457	11417	DP690-11	120.03	76.532			NaN	NaN	NaN	0	0	Median	20747000	20747000	0	8027	1210	7551	15753	38551	38551		1	9606
LAQVIFDKNDSDFEAK	2	0	Unmodified	1838.905	0.90504357	1439	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	1	10.5	0.5										1	1						16.037	16.037	3	0.0010916	11111	DP690-10	83.823	83.823			1.0294	1.2199	31.37	2	0	Median	216290000	109290000	107000000	8028	1439	7552	15754;15755	38552;38553;38554;38555;38556;38557	38553		6	9606
LAQVSPELLLASVR	0	1	Unmodified	1494.877	0.87697832	182	O43592	XPOT	Exportin-T	yes	yes	0	0	0	3	0			1														21.187	21.187	2	4.0846E-05	16559	DP690-3	160.72	160.72			0.90383	1.0154	NaN	1	0	Median	33273000	16754000	16519000	8029	182	7553	15756	38558;38559;38560;38561	38560		4	9606
LASAFTEEQAVLYNQR	0	1	Unmodified	1838.9163	0.91627696	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	9	3.56				1							1	1					18.02	18.02	2	7.6742E-60	13242	DP690-12	365.88	331.49			0.76706	0.89077	2.3064	2	0	Median	119560000	67634000	51926000	8030	2342	7554	15757;15758;15759	38562;38563;38564;38565;38566;38567;38568;38569;38570;38571	38568		10	9606
LASALAPSIYEHEDIKK	2	0	Unmodified	1883.9993	0.9992783	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	1	11	0											2						14.244	14.244	3	0.031814	8329	DP690-11	70.451	46.341			NaN	NaN	NaN	0	0	Median	34947000	0	34947000	8031	651	7555	15760;15761	38572;38573	38572		2	9606
LASALDLPLLR	0	1	Unmodified	1180.718	0.71795849	1155	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	11	0											1						21.118	21.118	2	0.054348	17898	DP690-11	60.518	42.256			0.94538	1.1456	NaN	1	0	Median	4159700	2229900	1929800	8032	1155	7556	15762	38574	38574		1	9606
LASAQEVAGSTSAK	1	0	Unmodified	1318.6729	0.67285879	1625	Q8IYL3	C1orf174	UPF0688 protein C1orf174	yes	yes	0	0	0	15	1														1		1	11.383	11.383	2	2.4368E-05	3831	DP690-14	174.77	127.57			0.79637	0.94581	11.07	2	0	Median	66182000	32052000	34130000	8033	1625	7557	15763;15764	38575;38576;38577;38578;38579	38576		5	9606
LASDLLEWIR	0	1	Unmodified	1214.6659	0.66592292	476;186	P12814;O43707	ACTN1;ACTN4	Alpha-actinin-1;Alpha-actinin-4	no	no	0	0	0	11	0											1						22.047	22.047	2	6.0075E-05	19366	DP690-11	288.7	184.65			0.89504	1.0674	NaN	1	0	Median	43199000	21758000	21441000	8034	476;186	7558	15765	38580;38581;38582;38583	38581		4	9606
LASFFLSR	0	1	Unmodified	939.5178	0.51780212	1635	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	10	0										2							18.34	18.34	2	0.033533	14357	DP690-10	122.74	87.248			NaN	NaN	NaN	0	0	Median	0	0	0	8035	1635	7559	15766;15767	38584;38585	38585		2	9606
LASFSPSPPSPYPTTVGPVESSGLR	0	1	Unmodified	2529.2751	0.27511881	1926	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	0	0	12	0												1					18.767	18.767	2	1.4464E-12	14264	DP690-12	144.15	115.14			NaN	NaN	NaN	0	0	Median	8250600	8250600	0	8036	1926	7560	15768	38586;38587	38587		2	9606
LASGCDGSEIPDEVK	1	0	Unmodified	1575.7087	0.70865195	2332	Q9UEW8	STK39	STE20/SPS1-related proline-alanine-rich protein kinase	yes	yes	0	0	0	4	0				1													14.445	14.445	2	2.4455E-05	7849	DP690-4	155.47	120.72			0.87139	0.95196	NaN	1	0	Median	11711000	6050300	5660500	8037	2332	7561	15769	38588;38589	38589		2	9606
LASILTSAAR	0	1	Unmodified	1001.5869	0.58694431	1178	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	4	0				2													15.08	15.08	2	6.4181E-05	8777	DP690-4	194.29	122.16			0.77149	0.84512	NaN	1	0	Median	52259000	28637000	23622000	8038	1178	7562	15770;15771	38590;38591;38592;38593;38594;38595	38594		6	9606
LASIVEQVSVLQNQGR	0	1	Unmodified	1739.953	0.95299681	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											2						18.968	18.968	2	3.5929999999999997E-93	15197	DP690-11	311.88	228.83			NaN	NaN	NaN	0	0	Median	145550000	145550000	0	8039	891	7563	15772;15773	38596;38597;38598	38596		3	9606
LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR	0	1	Oxidation (M)	4219.0386	0.038617071	735	P43243	MATR3	Matrin-3	yes	yes	0	1	0	11	0											1						20.129	20.129	4	1.6689E-17	16777	DP690-11	138.85	132.09			0.76386	0.91898	NaN	1	0	Median	73996000	39091000	34905000	8040	735	7564	15774	38599;38600;38601	38601	1081;1082	3	9606
LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR	0	1	2 Oxidation (M)	4235.0335	0.033531693	735	P43243	MATR3	Matrin-3	yes	yes	0	2	0	11	0											1						19.33	19.33	4	0.00010243	15649	DP690-11	56.108	39.745			NaN	NaN	NaN	0	0	Median	29794000	0	29794000	8041	735	7564	15775	38602	38602	1081;1082	1	9606
LASMATLLAR	0	1	Unmodified	1045.5954	0.59540051	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	13	0													1				18.028	18.028	2	0.0011627	12877	DP690-13	107.69	50.883			0.86483	1.0438	NaN	1	0	Median	74905000	30779000	44126000	8042	1906	7565	15776	38603;38604	38603		2	9606
LASMSPIGTDLETVK	1	0	Oxidation (M)	1576.8018	0.80182405	1102	Q03001	DST	Dystonin	yes	yes	0	1	0	9	0									1								16.285	16.285	2	0.013058	10203	DP690-9	98.156	55.354			NaN	NaN	NaN	0	0	Median	2565200	2565200	0	8043	1102	7566	15777	38605	38605	1719	1	9606
LASPVAPGALTTPGGSAPAQVVHTQPPPR	0	1	Unmodified	2773.4875	0.48751162	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	9.5	0.5									1	1							15.982	15.982	3	0.0029588	10963	DP690-10	76	31.417			NaN	NaN	NaN	0	0	Median	23108000	23108000	0	8044	1891	7567	15778;15779	38606;38607	38606		2	9606
LASQANIAQVLAELK	1	0	Unmodified	1567.8934	0.89335667	1152;1013	Q10567;P63010	AP1B1;AP2B1	AP-1 complex subunit beta-1;AP-2 complex subunit beta	no	no	0	0	0	7	4			1								1						21.585	21.585	2	1.4713E-09	18715	DP690-11	198.32	198.32			0.88353	1.0711	NaN	1	0	Median	71112000	38596000	32516000	8045	1152;1013	7568	15780;15781	38608;38609;38610;38611;38612	38610		5	9606
LASQGDSISSQLGPIHPPPR	0	1	Unmodified	2056.0702	0.070151836	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	3	0			1														15.341	15.341	3	0.025732	9177	DP690-3	70.335	37.341			NaN	NaN	NaN	0	0	Median	6085600	6085600	0	8046	1798	7569	15782	38613	38613		1	9606
LASTLVHLGEYQAAVDGAR	0	1	Unmodified	1970.0221	0.022139011	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	8.5	3.77		1								1	2						17.272	17.272	3	1.1713E-09	12841	DP690-10	173.34	134.53			1.2671	1.3237	NaN	1	0	Median	216810000	46987000	169820000	8047	1075	7570	15783;15784;15785;15786	38614;38615;38616;38617;38618;38619;38620	38615		7	9606
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK	1	0	Unmodified	2773.4246	0.4246366	384	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	16	0																1	15.766	15.766	2	2.0251E-06	9532	DP690-16	138.82	116.93			NaN	NaN	NaN	0	0	Median	2138600	2138600	0	8048	384	7571	15787	38621;38622	38621		2	9606
LASYLDKVQALEEANNDLENK	2	0	Unmodified	2376.1809	0.18088408	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	4	0				2													18.751	18.751	3	1.213E-05	13216	DP690-4	150.13	111.25		+	NaN	NaN	NaN	0	0	Median	0	0	0	8049	667	7572	15788;15789	38623;38624	38623		2	9606
LASYLDKVR	1	1	Unmodified	1063.6026	0.60259438	42;40;29;45;55	CON__P13645;P13645;CON__P02533;P02533;CON__A2A4G1;CON__Q04695;Q04695;CON__Q9QWL7;CON__P08779;P08779;CON__Q99456;Q99456	KRT10;KRT14;KRT17;KRT16;KRT12	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 12	no	no	0	0	1	4.86	5.08	2	2		1				1								1	13.232	13.232	2;3	0.0012751	6208	DP690-16	140.35	71.567		+	NaN	NaN	NaN	0	0	Median	7736300	7736300	0	8050	42;29;45;40;55	7573	15790;15791;15792;15793;15794;15795;15796	38625;38626;38627;38628;38629;38630;38631;38632;38633	38628		9	9606
LATATFAGIENK	1	0	Unmodified	1234.6558	0.65575216	274	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	12	0												1					15.711	15.711	2	2.9438E-07	9982	DP690-12	171.33	124.87			NaN	NaN	NaN	0	0	Median	43243000	43243000	0	8051	274	7574	15797	38634;38635	38635		2	9606
LATNAAVTVLR	0	1	Unmodified	1127.6663	0.66625727	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	4	0				1													15.116	15.116	2	0.00063668	8673	DP690-4	109.83	66.061			1.7951	1.9946	NaN	1	0	Median	39159000	14756000	24403000	8052	826	7575	15798	38636;38637;38638;38639;38640	38638		5	9606
LATNTSAPDLK	1	0	Unmodified	1129.5979	0.59790293	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10.1	3.64		1								3		1	1	1			12.443	12.443	2	7.9109E-05	5160	DP690-14	128.6	64.182			0.81102	0.8496	24.825	3	0	Median	1854999999.9999998	1194500000	660420000	8053	604	7576	15799;15800;15801;15802;15803;15804;15805	38641;38642;38643;38644;38645;38646;38647;38648;38649;38650;38651;38652;38653;38654;38655;38656	38652		16	9606
LATQLTGPVMPVR	0	1	Oxidation (M)	1397.7701	0.77007041	593	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	1	0	15	0															1		15.095	15.095	2	1.1719E-05	8889	DP690-15	190.57	161.85			0.80902	0.87487	NaN	1	0	Median	175180000	94477000	80708000	8054	593	7577	15806	38657;38658;38659;38660	38660	783	4	9606
LATQSNEITIPVTFESR	0	1	Unmodified	1904.9844	0.98435652	374	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	11	4							1								1		19.007	19.007	2	2.5316E-35	13319	DP690-7	316.65	280.37			1.1809	1.3133	2.7331	2	0	Median	128810000	59255000	69553000	8055	374	7578	15807;15808	38661;38662;38663;38664;38665;38666;38667	38664		7	9606
LATTACTLGDGEAVGADSGTSSAVSLK	1	0	Unmodified	2538.2119	0.21192621	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	9	0									1								16.685	16.685	2	1.3276E-16	10764	DP690-9	173.87	146.61			0.8851	1.0968	NaN	1	0	Median	3927100	2291500	1635600	8056	295	7579	15809	38668;38669;38670	38669		3	9606
LATTILQHWK	1	0	Unmodified	1209.687	0.68699271	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									2								15.536	15.536	2;3	6.6375E-05	9205	DP690-9	166.68	148.42			0.80307	0.93442	8.9784	2	0	Median	157200000	87359000	69844000	8057	1046	7580	15810;15811	38671;38672;38673;38674;38675;38676	38674		6	9606
LAVDEEENADNNTK	1	0	Unmodified	1560.6904	0.69035934	360	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	9.5	6.5			1													1	11.804	11.804	2	2.7126E-06	4444	DP690-3	186.74	158.51			1.0882	1.2077	17.543	2	0	Median	11905000	6897000	5008300	8058	360	7581	15812;15813	38677;38678;38679;38680;38681;38682;38683	38680		7	9606
LAVEILNK	1	0	Unmodified	898.54877	0.54876789	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	12	0												1					15.706	15.706	2	0.056176	9931	DP690-12	111.65	51.354			0.85718	1.0028	NaN	1	0	Median	96154000	53435000	42719000	8059	538	7582	15814	38684	38684		0	9606
LAVLLVTLVAAAVSYLR	0	1	Unmodified	1771.0971	0.097141855	2098	Q9H1C4	UNC93B1	Protein unc-93 homolog B1	yes	yes	0	0	0	10	0										1							30.234	30.234	2	0.056669	27534	DP690-10	89.189	66.714			NaN	NaN	NaN	0	0	Median	0	0	0	8060	2098	7583	15815	38685	38685		1	9606
LAVLPPELAHTTELHVLDVAGNR	0	1	Unmodified	2464.3438	0.3438075	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										2							19.446	19.446	4	1.5687E-05	15817	DP690-10	125.03	95.906			0.59494	0.72347	NaN	1	0	Median	185890000	106690000	79205000	8061	1254	7584	15816;15817	38686;38687;38688	38687		3	9606
LAVNMVPFPR	0	1	Unmodified	1142.627	0.62703499	1034;406;2017;370;2010;1217;1389;24	P07437;A6NNZ2;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;P04350;Q3ZCM7;Q9BUF5;CON__ENSEMBL:ENSBTAP00000025008	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A;TUBB8;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-6 chain	no	no	0	0	0	9.33	4.03					2	1							2	1			19.391	19.391	2	3.8477E-05	13621	DP690-13	173.68	125.81		+	0.89543	0.93835	15.858	5	0	Median	2903500000	1551099999.9999998	1352400000	8062	406;1034;2017;1217;370;1389;2010;24	7585	15818;15819;15820;15821;15822;15823	38689;38690;38691;38692;38693;38694;38695;38696;38697;38698;38699;38700;38701;38702;38703	38690		15	9606
LAVNMVPFPR	0	1	Oxidation (M)	1158.6219	0.62194961	1034;406;2017;370;2010;1217;1389;24	P07437;A6NNZ2;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;P04350;Q3ZCM7;Q9BUF5;CON__ENSEMBL:ENSBTAP00000025008	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A;TUBB8;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-6 chain	no	no	0	1	0	11.8	3.49					1								3		1		18.04	18.04	2	0.00015633	13686	DP690-13	148.04	115.23		+	0.8305	0.93587	9.2479	3	0	Median	476020000	261500000	214530000	8063	406;1034;2017;1217;370;1389;2010;24	7585	15824;15825;15826;15827;15828	38704;38705;38706;38707;38708;38709;38710;38711	38705	24	8	9606
LAVVDPLFGMQPIR	0	1	Oxidation (M)	1570.8541	0.85413439	418	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	1	0	4	0				3													19.973	19.973	2	0.0011846	14680	DP690-4	104.79	57.507			2.3938	2.7741	NaN	1	0	Median	16688000	3547400	13140000	8064	418	7586	15829;15830;15831	38712;38713;38714;38715	38713	475	4	9606
LAVYIDR	0	1	Unmodified	848.4756	0.47560295	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	12	0												1					14.56	14.56	2	0.066916	8371	DP690-12	100.74	21.288			NaN	NaN	NaN	0	0	Median	124380000	124380000	0	8065	359	7587	15832	38716;38717	38716		2	9606
LAWGQPVGLR	0	1	Unmodified	1095.6189	0.61891314	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	11	0											1						17.29	17.29	2	0.012454	12754	DP690-11	80.229	80.229			0.70874	0.85029	NaN	1	0	Median	61183000	33095000	28088000	8066	770	7588	15833	38718;38719	38718		2	9606
LAYELYTEALGIDPNNIK	1	0	Unmodified	2036.0466	0.046622427	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	12	0												1					21.868	21.868	2	0.0096257	18193	DP690-12	101.38	76.058			NaN	NaN	NaN	0	0	Median	1799500	0	1799500	8067	1946	7589	15834	38720	38720		1	9606
LAYINPDLALEEK	1	0	Unmodified	1487.7872	0.78716026	642	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	4	0				1													18.559	18.559	2	0.0058406	13034	DP690-4	111.52	51.422			NaN	NaN	NaN	0	0	Median	5383900	0	5383900	8068	642	7590	15835	38721;38722	38721		2	9606
LAYLQILSEETSVK	1	0	Unmodified	1592.8661	0.86613887	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	12	0												1					20.673	20.673	2	2.4969E-11	16742	DP690-12	183.99	129.45			NaN	NaN	NaN	0	0	Median	8171600	0	8171600	8069	538	7591	15836	38723;38724	38724		2	9606
LCDSGELVAIK	1	0	Unmodified	1203.6169	0.61692381	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	13	0													1				15.64	15.64	2	0.010204	9614	DP690-13	78.098	44.835			1.032	1.1946	NaN	1	0	Median	45803000	22507000	23296000	8070	811	7592	15837	38725;38726	38726		2	9606
LCDSYEIRPGK	1	1	Unmodified	1336.6445	0.64453555	176	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	1	12	0												1					12.552	12.552	3	0.0014113	5569	DP690-12	89.9	73.428			0.79598	0.93188	NaN	1	0	Median	101540000	53813000	47725000	8071	176	7593	15838	38727;38728;38729;38730;38731	38727		5	9606
LCECSFNDPNAK	1	0	Unmodified	1453.5966	0.59659908	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	11	0											1						13.194	13.194	2	0.075407	6715	DP690-11	80.916	42.166			NaN	NaN	NaN	0	0	Median	0	0	0	8072	1889	7594	15839	38732	38732		1	9606
LCEDQNGNPYVK	1	0	Unmodified	1435.6402	0.64017845	310	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	11	0											2						12.611	12.611	2	0.0040941	5899	DP690-11	123.86	55.203			NaN	NaN	NaN	0	0	Median	19892000	19892000	0	8073	310	7595	15840;15841	38733;38734;38735	38733		3	9606
LCFSTAQHAS	0	0	Unmodified	1120.4971	0.49714303	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	12	0												1					13.135	13.135	2	0.0018795	6238	DP690-12	136.8	108.62			NaN	NaN	NaN	0	0	Median	0	0	0	8074	494	7596	15842	38736;38737;38738	38736		3	9606
LCFSTSSHL	0	0	Unmodified	1050.4804	0.48043033	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												1					15.93	15.93	2	0.0056756	10241	DP690-12	122.79	63.809			NaN	NaN	NaN	0	0	Median	0	0	0	8075	1750	7597	15843	38739;38740	38740		2	9606
LCGDTSLNNMQR	0	1	Oxidation (M)	1423.6184	0.61839715	82	O00410	IPO5	Importin-5	yes	yes	0	1	0	3	0			1														11.172	11.172	2	0.00020393	3636	DP690-3	134.25	88.118			1.0627	1.215	NaN	1	0	Median	14044000	6441300	7603200	8076	82	7598	15844	38741;38742;38743;38744;38745;38746	38744	90	6	9606
LCGDTSLNNMQR	0	1	Unmodified	1407.6235	0.62348253	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			1														13.302	13.302	2	0.040053	6393	DP690-3	88.496	50.779			NaN	NaN	NaN	0	0	Median	2755000	0	2755000	8077	82	7598	15845	38747;38748	38747		2	9606
LCHEDVEALAAIYEEK	1	0	Unmodified	1888.8877	0.88767894	173	O43293	DAPK3	Death-associated protein kinase 3	yes	yes	0	0	0	13	0													1				18.314	18.314	3	0.00075612	13304	DP690-13	86.548	71.955			0.79706	0.92753	NaN	1	0	Median	26445000	12375000	14070000	8078	173	7599	15846	38749;38750	38750		2	9606
LCLISTFLEDGIR	0	1	Unmodified	1535.8018	0.80176447	147	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	9.5	0.5									1	1							22.844	22.844	2	2.9078E-05	20444	DP690-10	143.89	113.32			0.70357	0.8784	17.209	2	0	Median	31663000	18244000	13419000	8079	147	7600	15847;15848	38751;38752;38753;38754;38755;38756;38757;38758;38759	38753		9	9606
LCLQHLQIFTYER	0	1	Unmodified	1719.8767	0.87666075	1569	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	11	0											1						18.715	18.715	3	0.0034452	14759	DP690-11	98.531	61.948			NaN	NaN	NaN	0	0	Median	0	0	0	8080	1569	7601	15849	38760	38760		1	9606
LCLQSIAFISR	0	1	Unmodified	1306.7067	0.70674187	910	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	15	0															1		19.953	19.953	2	0.0056796	15136	DP690-15	86.882	65.136			0.90029	1.0521	NaN	1	0	Median	3063200	1710700	1352500	8081	910	7602	15850	38761;38762;38763;38764	38761		4	9606
LCLWDLAEGR	0	1	Unmodified	1231.6019	0.60194245	2047	Q9BYB4	GNB1L	Guanine nucleotide-binding protein subunit beta-like protein 1	yes	yes	0	0	0	13	0													1				12.729	12.729	2	0.055391	5647	DP690-13	62.464	6.0327			0.81128	0.89855	NaN	1	0	Median	415770000	226870000	188900000	8082	2047	7603	15851	38765	38765		1	9606
LCNDHEVLTFIK	1	0	Unmodified	1487.7442	0.74424959	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												2					16.291	16.291	3	3.7494E-05	10892	DP690-12	148.78	83.605			0.80935	0.92792	NaN	1	0	Median	131310000	88610000	42696000	8083	1750	7604	15852;15853	38766;38767;38768;38769	38768		4	9606
LCNLEEGSPGSGTYTR	0	1	Unmodified	1739.7785	0.77846285	2461	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	11	4							1								1		13.927	13.927	2	2.9746E-17	7283	DP690-15	215.77	180.99			0.81651	0.92467	NaN	1	0	Median	52813000	31215000	21599000	8084	2461	7605	15854;15855	38770;38771;38772;38773;38774	38772		5	9606
LCQLGSEFCELEVFAK	1	0	Unmodified	1928.9012	0.90122052	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	4	0				1													21.819	21.819	2	0.0024902	16683	DP690-4	124.12	81.322			NaN	NaN	NaN	0	0	Median	3544800	0	3544800	8085	1784	7606	15856	38775;38776	38775		2	9606
LCQSFQTFSICYAETGLLGAHFVCDR	0	1	Unmodified	3079.399	0.39903225	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	14	1													1		1		21.997	21.997	3	6.0532E-16	17931	DP690-13	162.82	151.39			0.90841	1.0777	13.165	2	0	Median	70998000	36305000	34692000	8086	637	7607	15857;15858	38777;38778;38779;38780;38781;38782;38783;38784	38779		8	9606
LCSAHGVLVPGGFGVR	0	1	Unmodified	1624.8508	0.85078035	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	4	0				2													16.108	16.108	2;3	7.3886E-06	9928	DP690-4	126.56	126.56			0.9173	0.97023	NaN	1	0	Median	111120000	55434000	55685000	8087	516	7608	15859;15860	38785;38786;38787;38788;38789	38785		5	9606
LCSGVLGTVVHGK	1	0	Unmodified	1325.7126	0.71255553	2517	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	14.5	0.5														2	2		14.217	14.217	2;3	3.2464E-05	7799	DP690-14	123.95	123.95			0.81986	0.88652	15.641	4	0	Median	1141900000	618860000	523080000	8088	2517	7609	15861;15862;15863;15864	38790;38791;38792;38793;38794;38795;38796;38797;38798;38799;38800;38801;38802	38797		13	9606
LCSLFYTNEEVAK	1	0	Unmodified	1572.7494	0.74939455	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											1						17.415	17.415	2	2.7562E-05	12855	DP690-11	141.1	123.36			0.90048	1.0876	NaN	1	0	Median	54398000	27767000	26631000	8089	735	7610	15865	38803;38804;38805	38803		3	9606
LCSQYGTPVFSAPGHALHPGEPALGEAEER	0	1	Unmodified	3176.4985	0.4985466	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								16.329	16.329	4	1.5906E-05	10275	DP690-9	102.65	85.001			NaN	NaN	NaN	0	0	Median	8668100	8668100	0	8090	1048	7611	15866	38806;38807;38808;38809	38807		4	9606
LCTEDEASSCATAQR	0	1	Unmodified	1697.6985	0.69849796	1150	Q0VG06	FAAP100	Fanconi anemia-associated protein of 100 kDa	yes	yes	0	0	0	11	0											1						11.597	11.597	2	0.0013421	4424	DP690-11	151.26	126.4			NaN	NaN	NaN	0	0	Median	0	0	0	8091	1150	7612	15867	38810	38810		1	9606
LCTSATESEVAR	0	1	Unmodified	1322.6136	0.61362935	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	14.4	1.02													1	2	1	1	11.937	11.937	2	4.2268E-05	4555	DP690-16	183.72	142.3			0.82299	0.82467	7.0045	4	0	Linear	2871900000	1562999999.9999998	1308900000	8092	637	7613	15868;15869;15870;15871;15872	38811;38812;38813;38814;38815;38816;38817;38818;38819;38820;38821;38822;38823;38824	38824		14	9606
LCTVNSVEEK	1	0	Unmodified	1177.5649	0.56488824	834;835	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	10	0										1							11.743	11.743	2	0.0016953	4713	DP690-10	104.2	62.01			0.64195	0.79191	NaN	1	0	Median	96161000	57915000	38247000	8093	834;835	7614	15873	38825;38826;38827;38828;38829	38826		5	9606
LCYVALDFENEMATAASSSSLEK	1	0	Oxidation (M)	2551.1458	0.14582048	1029	P68032;P68133;P63267;P62736	ACTC1;ACTA1;ACTG2;ACTA2	Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	yes	no	0	1	0	14	0														2			29.108	29.108	2	5.9331E-09	25275	DP690-14	165.49	126.49			NaN	NaN	NaN	0	0	Median	0	0	0	8094	1029	7615	15874;15875	38830;38831	38830	1561	2	9606
LCYVALDFEQEMATAASSSSLEK	1	0	Oxidation (M)	2565.1615	0.16147054	926;1023	P60709;Q6S8J3;P63261	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	14.1	0.639													2	22	2	2	24.911	24.911	2;3	4.9426000000000005E-30	15212	DP690-14	227.91	204.03			0.8516	0.97698	12.601	13	0	Median	1868199999.9999998	990580000	877650000	8095	926;1023	7616	15876;15877;15878;15879;15880;15881;15882;15883;15884;15885;15886;15887;15888;15889;15890;15891;15892;15893;15894;15895;15896;15897;15898;15899;15900;15901;15902;15903	38832;38833;38834;38835;38836;38837;38838;38839;38840;38841;38842;38843;38844;38845;38846;38847;38848;38849;38850;38851;38852;38853;38854;38855;38856;38857;38858;38859;38860;38861;38862;38863;38864;38865;38866;38867;38868;38869;38870;38871;38872;38873;38874;38875;38876;38877;38878;38879;38880;38881;38882;38883;38884;38885;38886;38887;38888;38889;38890;38891;38892;38893;38894;38895;38896	38835	1426	65	9606
LCYVALDFEQEMATAASSSSLEK	1	0	Unmodified	2549.1666	0.16655592	926;1023	P60709;Q6S8J3;P63261	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	14.2	0.464														27	4	1	26.596	26.596	2;3	7.2971E-55	17953	DP690-15	282.73	282.73			0.84914	0.99944	13.26	18	0	Median	875580000	459660000	415920000	8096	926;1023	7616	15904;15905;15906;15907;15908;15909;15910;15911;15912;15913;15914;15915;15916;15917;15918;15919;15920;15921;15922;15923;15924;15925;15926;15927;15928;15929;15930;15931;15932;15933;15934;15935	38897;38898;38899;38900;38901;38902;38903;38904;38905;38906;38907;38908;38909;38910;38911;38912;38913;38914;38915;38916;38917;38918;38919;38920;38921;38922;38923;38924;38925;38926;38927;38928;38929;38930;38931;38932;38933;38934;38935;38936;38937;38938;38939;38940;38941;38942;38943;38944;38945;38946;38947;38948;38949;38950;38951;38952;38953;38954;38955;38956;38957;38958;38959;38960;38961;38962;38963;38964;38965;38966;38967;38968;38969;38970;38971;38972;38973;38974;38975;38976;38977;38978;38979	38967		83	9606
LCYVGYNIEQEQK	1	0	Unmodified	1642.7661	0.76610724	941	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	14	0														1			16.168	16.168	2	8.7442E-05	10512	DP690-14	180.09	142.15			0.95541	1.1601	NaN	1	0	Median	61047000	30699000	30348000	8097	941	7617	15936	38980;38981;38982;38983;38984	38984		5	9606
LDADMPEVAVEGPNGK	1	0	Oxidation (M)	1656.7665	0.76650118	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9	0									1								14.548	14.548	2	9.5623E-07	7940	DP690-9	153.54	139.3			1.1926	1.5166	NaN	1	0	Median	7910900	3666500	4244400	8098	1145	7618	15937	38985;38986;38987;38988	38988	1786	4	9606
LDADMPEVAVEGPNGK	1	0	Unmodified	1640.7716	0.77158655	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								16.663	16.663	2	0.029541	10692	DP690-9	98.407	50.219			NaN	NaN	NaN	0	0	Median	0	0	0	8099	1145	7618	15938	38989	38989		1	9606
LDAEPRPPPTQEAA	0	1	Unmodified	1490.7365	0.73652168	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	1	12.3	3.94				1								1	1	1	1	1	13.052	13.052	2	7.056E-05	6306	DP690-4	127.87	102.65			0.54161	0.66596	13.604	5	0	Median	1434700000	866640000	568060000	8100	2434	7619	15939;15940;15941;15942;15943;15944	38990;38991;38992;38993;38994;38995;38996;38997;38998;38999;39000;39001;39002;39003;39004;39005;39006;39007;39008;39009;39010;39011;39012	39011		23	9606
LDAFIEALHQEK	1	0	Unmodified	1412.73	0.72997974	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	3	0			1														16.697	16.697	3	0.00057939	10910	DP690-3	88.338	62.996			0.89684	0.96277	NaN	1	0	Median	20260000	10647000	9612900	8101	203	7620	15945	39013;39014;39015;39016	39016		4	9606
LDAPVDYFYRPETQHR	0	2	Unmodified	2005.9646	0.96462413	2503	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	1	12	0												1					16.249	16.249	4	0.00040871	10721	DP690-12	91.307	67.019			0.72263	0.81935	NaN	1	0	Median	110940000	63379000	47563000	8102	2503	7621	15946	39017;39018;39019	39017		3	9606
LDAVNTLLAMAER	0	1	Unmodified	1415.7442	0.74424959	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	9.67	0.471									1	2							22.815	22.815	2	6.9134E-05	20492	DP690-10	133.42	72.258			0.67305	0.83801	NaN	1	0	Median	21396000	12915000	8480900	8103	2276	7622	15947;15948;15949	39020;39021;39022	39020		3	9606
LDCSQGYTEENTIFAPR	0	1	Unmodified	1999.8946	0.89455524	2019	Q9BVG4	PBDC1	Protein PBDC1	yes	yes	0	0	0	14	0														1			17.603	17.603	2	0.001175	12508	DP690-14	155.98	125.1			NaN	NaN	NaN	0	0	Median	14804000	14804000	0	8104	2019	7623	15950	39023;39024	39024		2	9606
LDCYEGLIECYLASNSIR	0	1	Unmodified	2174.9976	0.9976401	2363	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	12	0												1					23.083	23.083	2	0.041488	19639	DP690-12	85.837	49.42			NaN	NaN	NaN	0	0	Median	846280	846280	0	8105	2363	7624	15951	39025;39026	39026		2	9606
LDDFLDLNHK	1	0	Unmodified	1228.6088	0.60880197	1752	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	6	0						1											16.995	16.995	2	9.163E-05	10477	DP690-6	152.47	113.44			1.0473	1.1805	NaN	1	0	Median	4999000	2764500	2234500	8106	1752	7625	15952	39027;39028;39029;39030	39027		4	9606
LDDIFEPVLIPEPK	1	0	Unmodified	1623.876	0.87597527	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							21.821	21.821	2	0.0014174	19259	DP690-10	96.103	83.122			0.6908	0.84896	NaN	1	0	Median	35123000	21569000	13554000	8107	1240	7626	15953	39031;39032;39033;39034	39031		4	9606
LDDLVSTGK	1	0	Unmodified	946.49713	0.49712625	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	11	0											1						13.419	13.419	2	0.001952	7099	DP690-11	115.49	71.377			0.76524	0.84679	NaN	1	0	Median	274050000	150620000	123440000	8108	1768	7627	15954	39035;39036	39035		2	9606
LDDNEALIEK	1	0	Unmodified	1158.5768	0.57683314	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	13	0													1				14.257	14.257	2	0.0010502	7736	DP690-13	108.43	58.716			0.88032	1.0188	NaN	1	0	Median	48190000	24123000	24067000	8109	934	7628	15955	39037;39038	39037		2	9606
LDDSLLYLR	0	1	Unmodified	1106.5972	0.59717465	792	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	0	0	0	15	0															1		19.401	19.401	2	0.0016054	14451	DP690-15	119.29	82.132			0.39063	0.45194	NaN	1	0	Median	14296000	10032000	4263600	8110	792	7629	15956	39039	39039		1	9606
LDEAEQLALK	1	0	Unmodified	1128.6027	0.60265396	2378	Q9UKX3;Q9Y623;P12882;P11055;Q9UKX2	MYH13;MYH4;MYH1;MYH3;MYH2	Myosin-13;Myosin-4;Myosin-1;Myosin-3;Myosin-2	no	no	0	0	0	10	4						1								1			18.72	18.72	2	0.0024671	12583	DP690-6	99.139	0			0.60945	0.71906	33.708	2	0	Median	67753000	40089000	27663000	8111	2378	7630	15957;15958	39040;39041;39042	39042		3	9606
LDEDLAAYCR	0	1	Unmodified	1224.5445	0.54448715	436	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	13	0													1				15.587	15.587	2	0.00764	9579	DP690-13	124.08	84.932			NaN	NaN	NaN	0	0	Median	0	0	0	8112	436	7631	15959	39043	39043		1	9606
LDEKNNAFPCQVNIK	2	0	Unmodified	1788.8829	0.88286834	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	10	0										1							14.523	14.523	3	0.070688	8779	DP690-10	42.317	22.648			0.97249	1.1677	NaN	1	0	Median	133210000	70269000	62945000	8113	2190	7632	15960	39044;39045	39044		2	9606
LDELEELLTNNR	0	1	Unmodified	1457.7362	0.73618733	246	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	0	0	13	0													2				20.744	20.744	2	2.1562E-51	16384	DP690-13	285.16	188.49			NaN	NaN	NaN	0	0	Median	0	0	0	8114	246	7633	15961;15962	39046;39047	39047		2	9606
LDEQGLNYQQK	1	0	Unmodified	1334.6466	0.64664404	164	O43166	SIPA1L1	Signal-induced proliferation-associated 1-like protein 1	yes	yes	0	0	0	10	0										2							13.299	13.299	2	0.0063163	7014	DP690-10	113.26	55.724			NaN	NaN	NaN	0	0	Median	68392000	29204000	39188000	8115	164	7634	15963;15964	39048;39049	39048		2	9606
LDFEGPDAK	1	0	Unmodified	990.46583	0.46582612	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								14.38	14.38	2	0.037469	7754	DP690-9	71.379	35.499			0.66233	0.83473	NaN	1	0	Median	19354000	11447000	7907100	8116	1145	7635	15965	39050;39051	39051		2	9606
LDFLIPLSK	1	0	Unmodified	1044.6219	0.62193284	776	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	4	0				1													20.977	20.977	2	0.053759	15879	DP690-4	66.299	6.2796			0.90696	0.97233	NaN	1	0	Median	4317000	2065900	2251100	8117	776	7636	15966	39052	39052		1	9606
LDFSITKDPAAEAR	1	1	Unmodified	1532.7835	0.78347187	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	1	12	0												1					15.829	15.829	3	0.0012559	10187	DP690-12	87.863	66.855			0.64808	0.83289	NaN	1	0	Median	31268000	17740000	13528000	8118	375	7637	15967	39053;39054;39055	39054		3	9606
LDGALCSYTEK	1	0	Unmodified	1255.5755	0.57545293	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	0	0	6	0						1											14.316	14.316	2	0.00063668	7316	DP690-6	109.83	88.858			0.77724	0.88877	NaN	1	0	Median	15002000	8739500	6262200	8119	1372	7638	15968	39056;39057;39058;39059	39059		4	9606
LDGALCSYTEKDK	2	0	Unmodified	1498.6974	0.69735898	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	0	1	8.25	3.34						2	1							1			12.973	12.973	2;3	2.4611E-10	6058	DP690-14	177.57	134.7			0.86652	0.91099	25.598	2	0	Median	63826000	39259000	24567000	8120	1372	7639	15969;15970;15971;15972	39060;39061;39062;39063;39064;39065;39066;39067	39061		8	9606
LDGLVETPTGYIESLPR	0	1	Unmodified	1858.9676	0.96764382	896	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	4.5	0.5				1	1												20.408	20.408	2	1.8911E-12	15138	DP690-4	198.57	167.84			0.87725	0.96809	16.661	2	0	Median	34816000	19823000	14993000	8121	896	7640	15973;15974	39068;39069;39070;39071;39072;39073	39068		6	9606
LDHKFDLMYAK	2	0	Oxidation (M)	1395.6857	0.68567208	1032;1521;1977;452;1033;11	P0DPH7;P0DPH8;P68363;Q71U36;Q9BQE3;P68366;A6NHL2	TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBAL3	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3	no	no	0	1	1	12	4.74				1									1		1	1	13.247	13.247	3	0.00042818	6227	DP690-13	105.36	86.613			1.0053	1.1002	6.4815	4	0	Median	2066699999.9999998	998000000	1068699999.9999999	8122	452;1032;1521;1977;1033;11	7641	15975;15976;15977;15978	39074;39075;39076;39077;39078;39079;39080;39081;39082	39074	12	9	9606
LDHKFDLMYAK	2	0	Unmodified	1379.6908	0.69075746	1032;1521;1977;452;1033;11	P0DPH7;P0DPH8;P68363;Q71U36;Q9BQE3;P68366;A6NHL2	TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBAL3	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3	no	no	0	0	1	7.33	4.03				1	1								1				14.534	14.534	3	4.219E-05	7804	DP690-13	147.26	113.39			1.0166	1.0949	8.6541	3	0	Plateau	1233600000	607340000	626270000	8123	452;1032;1521;1977;1033;11	7641	15979;15980;15981	39083;39084;39085;39086;39087;39088;39089	39084		7	9606
LDIDPETITWQR	0	1	Unmodified	1485.7464	0.74635808	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	11	0											1						19.53	19.53	2	3.1592E-10	15914	DP690-11	215.93	117.89			0.89151	0.96464	NaN	1	0	Median	422740000	231590000	191150000	8124	470	7642	15982	39090;39091;39092;39093;39094;39095	39093		6	9606
LDIDSPPITAR	0	1	Unmodified	1196.6401	0.6401021	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	4	0				1													16.171	16.171	2	0.0002676	9979	DP690-4	178.55	137.67			0.81776	0.84793	NaN	1	0	Median	159280000	88267000	71018000	8125	488	7643	15983	39096;39097;39098;39099;39100	39099		5	9606
LDIEASEAECR	0	1	Unmodified	1291.5714	0.57143018	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								14.132	14.132	2	0.041199	7326	DP690-9	65.157	36.07			0.96174	1.2041	NaN	1	0	Median	8336800	4558600	3778300	8126	2411	7644	15984	39101	39101		1	9606
LDIISEDISELQK	1	0	Unmodified	1501.7876	0.78755419	1539	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	12	0												1					20.462	20.462	2	9.1865E-05	16500	DP690-12	155.26	123.98			0.92196	1.1025	NaN	1	0	Median	33744000	16874000	16870000	8127	1539	7645	15985	39102;39103;39104;39105	39105		4	9606
LDIKLDSEDKDK	3	0	Unmodified	1417.73	0.73003931	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	2	11	0											1						12.52	12.52	3	0.061041	5737	DP690-11	76.165	38.984			NaN	NaN	NaN	0	0	Median	0	0	0	8128	483	7646	15986	39106	39106		1	9606
LDILDTAGQEEFGAMR	0	1	Oxidation (M)	1780.8302	0.83016406	961	P62070;P10301	RRAS2;RRAS	Ras-related protein R-Ras2;Ras-related protein R-Ras	yes	no	0	1	0	15	0															1		19.258	19.258	2	0.0052826	14310	DP690-15	81.278	62.468			0.47203	0.54642	NaN	1	0	Median	6012100	3792400	2219700	8129	961	7647	15987	39107;39108	39107	1479	2	9606
LDILELLEK	1	0	Unmodified	1084.638	0.63797683	196	O43929;CON__Q2YDI2	ORC4	Origin recognition complex subunit 4	yes	no	0	0	0	13.5	0.5													1	1			23.32	23.32	2	0.00086284	19464	DP690-13	128.12	45.881		+	0.99538	1.1638	44.408	2	0	Median	24800000	13635000	11165000	8130	196	7648	15988;15989	39109;39110;39111;39112	39109		4	9606
LDINLLDNVVNCLYHGEGAQQR	0	1	Unmodified	2540.2442	0.24416981	128	O14980	XPO1	Exportin-1	yes	yes	0	0	0	11	0											1						23.091	23.091	3	1.7715E-29	20638	DP690-11	214.46	187.46			0.89959	1.0746	NaN	1	0	Median	47436000	25796000	21640000	8131	128	7649	15990	39113;39114;39115;39116;39117;39118	39115		6	9606
LDKAQIHDLVLVGGSTR	1	1	Unmodified	1821.0108	0.010846043	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	8	4				1								1					15.583	15.583	4	0.00037149	9880	DP690-12	90.754	73.125			1.1704	1.3962	30.287	2	0	Median	65542000	34012000	31530000	8132	449	7650	15991;15992	39119;39120;39121;39122;39123	39120		5	9606
LDKSQIHDIVLVGGSTR	1	1	Unmodified	1837.0058	0.005760665	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	8	4				2								2					15.185	15.185	3;4	3.3851E-08	8772	DP690-4	171.87	144.66			2.042	2.329	38.067	3	0	Median	427250000	225800000	201450000	8133	463	7651	15993;15994;15995;15996	39124;39125;39126;39127;39128;39129;39130;39131;39132;39133;39134;39135;39136;39137	39131		14	9606
LDLAGRDLTDYLMK	1	1	Unmodified	1622.8338	0.83379288	926;1023;1029;1408	P60709;P63261;P68032;P68133;P63267;P62736;Q562R1	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	1	14	0														1			19.848	19.848	3	0.0026021	15413	DP690-14	77.078	44.601			0.93779	1.022	NaN	1	0	Median	309990000	173180000	136820000	8134	926;1023;1029;1408	7652	15997	39138;39139;39140;39141	39141		4	9606
LDLDIDGLQK	1	0	Unmodified	1128.6027	0.60265396	174	O43303	CCP110	Centriolar coiled-coil protein of 110 kDa	yes	yes	0	0	0	10	4						1								1			18.72	18.72	2	0.0028707	12521	DP690-6	96.492	51.41			0.60945	0.71906	33.708	2	0	Median	67753000	40089000	27663000	8135	174	7653	15998;15999	39142;39143;39144	39143		3	9606
LDLDVPDSGPPVFAPSNHVSEAQPR	0	1	Unmodified	2643.2929	0.29289414	1719	Q8TD55	PLEKHO2	Pleckstrin homology domain-containing family O member 2	yes	yes	0	0	0	4	0				2													18.122	18.122	3	0.0076185	12510	DP690-4	87.748	51.582			NaN	NaN	NaN	0	0	Median	4918300	4918300	0	8136	1719	7654	16000;16001	39145;39146;39147	39146		3	9606
LDLIAQQMMPEVR	0	1	2 Oxidation (M)	1574.7796	0.77964882	679	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	yes	yes	0	2	0	15	0															1		15.935	15.935	2	0.012529	10029	DP690-15	94.363	52.027			NaN	NaN	NaN	0	0	Median	19928000	19928000	0	8137	679	7655	16002	39148;39149	39148	981;982	2	9606
LDLPDLPLSDILK	1	0	Unmodified	1450.8283	0.8282968	1423	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	11	0											1						23.821	23.821	2	0.0026264	21494	DP690-11	90.827	90.827			1.2063	1.485	NaN	1	0	Median	10808000	4463000	6345400	8138	1423	7656	16003	39150;39151	39150		2	9606
LDLPPYETFEDLREK	1	1	Unmodified	1863.9254	0.92544466	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	1	3	0			1														19.078	19.078	3	0.00010731	13998	DP690-3	114.21	66.542			0.90079	0.99904	NaN	1	0	Median	21210000	11060000	10151000	8139	1911	7657	16004	39152;39153;39154;39155	39155		4	9606
LDLQYAK	1	0	Unmodified	849.45962	0.45961853	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	11	0											1						14.065	14.065	2	0.06126	8005	DP690-11	102.98	25.922			NaN	NaN	NaN	0	0	Median	160940000	160940000	0	8140	1319	7658	16005	39156	39156		1	9606
LDLRDDKDTIEK	2	1	Unmodified	1459.7518	0.75183739	1012	P63000;P15153	RAC1;RAC2	Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2	yes	no	0	0	2	15	0															1		12.362	12.362	3	0.050218	5169	DP690-15	60.08	15.781			0.75472	0.86257	NaN	1	0	Median	73424000	39430000	33994000	8141	1012	7659	16006	39157	39157		1	9606
LDLTLEIQTVGEQENGDEAPGVWMIPTSDPAANLHPAKPK	2	0	Oxidation (M)	4297.1213	0.12126729	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	9	0									1								20.752	20.752	4	0.00010331	15712	DP690-9	69.957	56.712			NaN	NaN	NaN	0	0	Median	5637900	5637900	0	8142	1046	7660	16007	39158	39158	1613	1	9606
LDLTLEIQTVGEQENGDEAPGVWMIPTSDPAANLHPAKPK	2	0	Unmodified	4281.1264	0.12635267	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								21.543	21.543	4	0.02272	16605	DP690-9	47.695	29.197			NaN	NaN	NaN	0	0	Median	2104500	2104500	0	8143	1046	7660	16008	39159	39159		1	9606
LDLVGSSQPIK	1	0	Unmodified	1155.6499	0.6499385	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															15.565	15.565	2	0.00015914	8397	DP690-2	145.72	84.895			0.90415	0.91196	NaN	1	0	Median	13854000	7583000	6271200	8144	2418	7661	16009	39160;39161;39162;39163	39163		4	9606
LDLVMVILFK	1	0	Oxidation (M)	1205.7094	0.70936763	423	P08651;O00712;Q14938;Q12857	NFIC;NFIB;NFIX;NFIA	Nuclear factor 1 C-type;Nuclear factor 1 B-type;Nuclear factor 1 X-type;Nuclear factor 1 A-type	yes	no	0	1	0	13	0													1				23.261	23.261	2	0.023088	19354	DP690-13	94.302	50.667			NaN	NaN	NaN	0	0	Median	1009800	0	1009800	8145	423	7662	16010	39164	39164	479	1	9606
LDNFLGEVR	0	1	Unmodified	1061.5506	0.55055881	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								17.428	17.428	2	0.024648	11644	DP690-9	75.378	31.029			1.0114	1.2634	NaN	1	0	Median	12135000	4215700	7919800	8146	2411	7663	16011	39165	39165		1	9606
LDNGGYYITTR	0	1	Unmodified	1271.6146	0.61461563	412	P07947;P06241	YES1;FYN	Tyrosine-protein kinase Yes;Tyrosine-protein kinase Fyn	yes	no	0	0	0	12	0												1					14.815	14.815	2	0.013749	8678	DP690-12	74.841	57.373			0.81386	0.97078	NaN	1	0	Median	31431000	17585000	13846000	8147	412	7664	16012	39166	39166		1	9606
LDNTLEEIIFK	1	0	Unmodified	1333.7129	0.71293269	1559	Q86SE9	PCGF5	Polycomb group RING finger protein 5	yes	yes	0	0	0	15	0															1		21.942	21.942	2	0.00053846	17295	DP690-15	112.3	112.3			0.87574	1.002	NaN	1	0	Median	2759500	1469400	1290100	8148	1559	7665	16013	39167;39168;39169;39170;39171	39167		5	9606
LDPETLESLGLIK	1	0	Unmodified	1426.7919	0.79191129	1706	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	10	0										1							21.482	21.482	2	3.264E-05	18754	DP690-10	150.1	102.92			0.77779	0.956	NaN	1	0	Median	39712000	20838000	18874000	8149	1706	7666	16014	39172;39173	39172		2	9606
LDPGLALGPGER	0	1	Unmodified	1193.6404	0.64043645	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11	0											1						16.276	16.276	2	0.0077815	11241	DP690-11	78.513	19.36			0.71216	0.85463	NaN	1	0	Median	110970000	58429000	52541000	8150	2024	7667	16015	39174	39174		1	9606
LDPGSEETQTLVR	0	1	Unmodified	1443.7205	0.72053726	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	9	0									1								14.784	14.784	2	2.7163E-05	8268	DP690-9	158.47	133.34			0.73591	0.92266	NaN	1	0	Median	7004100	4036600	2967500	8151	598	7668	16016	39175;39176;39177	39177		3	9606
LDPHLVLDQLR	0	1	Unmodified	1317.7405	0.74048484	668;669	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	7.67	4.03		1								1	1						18.472	18.472	3	2.6789E-05	11736	DP690-2	128.51	103.45			0.86869	1.0342	27.531	3	0	Median	324060000	174230000	149830000	8152	668;669	7669	16017;16018;16019	39178;39179;39180;39181;39182;39183;39184;39185;39186;39187	39187		10	9606
LDPHNHVLYSNR	0	1	Unmodified	1463.727	0.72696004	642	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	4	0				1													10.693	10.693	3	0.0003905	3127	DP690-4	110.98	94.204			1.2437	1.3787	NaN	1	0	Median	41021000	19244000	21776000	8153	642	7670	16020	39188;39189;39190;39191	39190		4	9606
LDPLKLQQLQNQIR	1	1	Unmodified	1705.9839	0.98390301	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	11	0											1						17.71	17.71	3	0.0023297	13286	DP690-11	127.56	93.771			NaN	NaN	NaN	0	0	Median	0	0	0	8154	1758	7671	16021	39192	39192		1	9606
LDPSIFESLQK	1	0	Unmodified	1275.6711	0.67106787	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	13	0													1				19.672	19.672	2	0.00011212	14992	DP690-13	125.97	81.592			0.78673	0.88592	NaN	1	0	Median	151820000	82234000	69584000	8155	2431	7672	16022	39193;39194;39195;39196	39193		4	9606
LDQEVAEVDKNIELLK	2	0	Unmodified	1854.9939	0.99385857	1958	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	1	9	4					1								1				18.282	18.282	3	4.7827E-18	13235	DP690-13	224.67	187.32			0.89456	0.92763	8.4889	2	0	Median	279600000	143160000	136440000	8156	1958	7673	16023;16024	39197;39198;39199;39200;39201;39202;39203	39198		7	9606
LDQGGVIQDFINALDQLSNPELLFK	1	0	Unmodified	2786.4491	0.44906043	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								30.214	30.214	2	1.7962E-37	24357	DP690-9	222.96	201.14			0.78171	0.94713	NaN	1	0	Median	2356000	1270800	1085100	8157	1046	7674	16025	39204;39205;39206;39207	39204		4	9606
LDQLIYIPLPDEK	1	0	Unmodified	1555.8498	0.84976052	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	7	4			1								1						21.203	21.203	2	0.00022322	16560	DP690-3	117.95	96.19			0.78332	0.89663	24.466	2	0	Median	51106000	29004000	22102000	8158	893	7675	16026;16027	39208;39209;39210;39211	39209		4	9606
LDQPMTEIVSR	0	1	Oxidation (M)	1303.6442	0.6442012	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	1	0	3	0			1														13.464	13.464	2	0.0027719	6562	DP690-3	100.88	70.314			0.95149	1.0586	NaN	1	0	Median	40006000	19546000	20460000	8159	561	7676	16028	39212;39213	39212	734	2	9606
LDQPVSAPPSPR	0	1	Unmodified	1262.6619	0.66190017	1353	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	4	0				1													12.794	12.794	2	0.014937	5624	DP690-4	103.31	60.963			NaN	NaN	NaN	0	0	Median	0	0	0	8160	1353	7677	16029	39214	39214		1	9606
LDQTHLETVIPAPGKR	1	1	Unmodified	1773.9737	0.97373226	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	1	13	0													1				14.24	14.24	4	0.0069348	7770	DP690-13	58.885	32.677			0.68137	0.75673	NaN	1	0	Median	132210000	73653000	58552000	8161	229	7678	16030	39215	39215		1	9606
LDRDPASGTALQEISFWLNLER	0	2	Unmodified	2530.2816	0.28160117	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								24.2	24.2	3	0.0003536	19692	DP690-9	93.804	75.632			0.79742	0.86437	NaN	1	0	Median	3607100	1791700	1815400	8162	1264	7679	16031	39216;39217;39218;39219;39220	39218		5	9606
LDSDAAGVFCIR	0	1	Unmodified	1322.6289	0.62888548	1386	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	yes	yes	0	0	0	13	0													1				18.162	18.162	2	0.0032637	13054	DP690-13	90.108	45.355			1.062	1.2993	NaN	1	0	Median	34711000	15169000	19542000	8163	1386	7680	16032	39221	39221		1	9606
LDSELKNMQDMVEDYR	1	1	2 Oxidation (M)	2016.8769	0.87685626	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	1	4	0				1													13.913	13.913	3	0.011808	7132	DP690-4	95.067	65.6		+	NaN	NaN	NaN	0	0	Median	33036000	33036000	0	8164	369	7681	16033	39222;39223	39223	383;384	2	9606
LDSHPCLEVTAAALR	0	1	Unmodified	1651.8352	0.83518986	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	4	0				1													16.079	16.079	3	0.0031513	10049	DP690-4	73.386	53.89			0.70786	0.82533	NaN	1	0	Median	13924000	9583300	4340500	8165	2116	7682	16034	39224;39225	39225		2	9606
LDSPATPEK	1	0	Unmodified	956.48148	0.48147619	772	P47989	XDH	Xanthine dehydrogenase/oxidase;Xanthine dehydrogenase;Xanthine oxidase	yes	yes	0	0	0	1	0	1																10.656	10.656	2	2.728E-06	2585	DP690-1	166.68	98.194			NaN	NaN	NaN	0	0	Median	10544000	10544000	0	8166	772	7683	16035	39226;39227	39226		2	9606
LDSSAQFGYYFR	0	1	Unmodified	1452.6674	0.66737948	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	9	3.46			1								3						18.962	18.962	2	1.0104E-06	15136	DP690-11	159.79	112.6			0.83093	0.94489	NaN	1	0	Median	79922000	5936400	73986000	8167	736	7684	16036;16037;16038;16039	39228;39229;39230;39231;39232;39233	39228		6	9606
LDSVLLLSSMNLPGGELR	0	1	Unmodified	1913.0292	0.029198224	1238	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	14	0														1			22.655	22.655	2	0.044031	18917	DP690-14	85.287	40.673			NaN	NaN	NaN	0	0	Median	1933000	0	1933000	8168	1238	7685	16040	39234	39234		1	9606
LDSVNKDLNSQLEYLR	1	1	Unmodified	1905.9796	0.97960549	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							17.403	17.403	3	0.042957	13030	DP690-10	79.326	42.688			NaN	NaN	NaN	0	0	Median	64183000	64183000	0	8169	13	7686	16041	39235	39235		1	9606
LDTAMWLSR	0	1	Oxidation (M)	1107.5383	0.53827956	910	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	1	0	15	0															1		17.154	17.154	2	0.022204	11633	DP690-15	86.136	32.969			1.2144	1.4044	NaN	1	0	Median	13556000	6340400	7215300	8170	910	7687	16042	39236;39237	39236	1406	2	9606
LDTMNTTCVDR	0	1	Oxidation (M)	1340.57	0.57004997	1143	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	1	0	11	0											1						11.255	11.255	2	0.011997	3941	DP690-11	83.862	83.862			0.91011	1.1087	NaN	1	0	Median	18420000	9436500	8983000	8171	1143	7688	16043	39238	39238	1759	1	9606
LDTSQWPLLLK	1	0	Unmodified	1312.7391	0.73908786	227	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	12	0												1					21.424	21.424	2	0.013407	17636	DP690-12	74.92	25.205			1.0299	1.248	NaN	1	0	Median	3929300	1900400	2028900	8172	227	7689	16044	39239;39240	39240		2	9606
LDVGNFSWGSECCTR	0	1	Unmodified	1786.7403	0.7403032	967	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	15	0															1		18.815	18.815	2	1.5456E-05	13784	DP690-15	168.98	152.36			0.89839	1.0368	NaN	1	0	Median	7235000	3610500	3624600	8173	967	7690	16045	39241;39242;39243;39244;39245;39246	39242		6	9606
LDVLSALVLAENTLNGPSTK	1	0	Unmodified	2054.1259	0.12593538	1380	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	11	0											1						26.206	26.206	2	6.0887E-18	24226	DP690-11	209.39	194.88			0.81635	0.95985	NaN	1	0	Median	2615600	1622300	993230	8174	1380	7691	16046	39247;39248;39249;39250;39251	39248		5	9606
LDVQFAGTAK	1	0	Unmodified	1048.5553	0.55530983	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	6	4		1								1							14.866	14.866	2	0.00010565	7529	DP690-2	142.98	108.8			1.0258	1.1369	7.4874	2	0	Median	188170000	86731000	101430000	8175	1270	7692	16047;16048	39252;39253;39254;39255;39256	39253		5	9606
LDVQFSGLTK	1	0	Unmodified	1106.5972	0.59717465	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	11	1										1		1					17.273	17.273	2	8.7367E-05	12835	DP690-10	207.29	137.69			0.95506	1.0916	11.865	2	0	Median	832710000	434230000	398480000	8176	549	7693	16049;16050	39257;39258;39259;39260;39261;39262	39260		6	9606
LDVTILSPSR	0	1	Unmodified	1099.6237	0.62372375	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	7	3.56		1							1	1							17.588	17.588	2	9.3217E-05	10842	DP690-2	126.24	66.124			0.7795	0.89704	3.1644	3	0	Median	361470000	202740000	158730000	8177	250	7694	16051;16052;16053	39263;39264;39265;39266;39267;39268;39269;39270;39271;39272;39273;39274	39270		12	9606
LDVTSVEDYK	1	0	Unmodified	1167.5659	0.5659341	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	4	0				1													16.285	16.285	2	0.0017238	10193	DP690-4	104.01	73.696			1.6296	1.7669	NaN	1	0	Median	25806000	9940300	15865000	8178	779	7695	16054	39275;39276;39277	39276		3	9606
LDVYTQWHQQSQSTKPK	2	0	Unmodified	2073.028	0.02795267	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	10.5	0.5										2	2						13.232	13.232	3;4	8.1372E-07	6778	DP690-11	139.49	111.46			0.78142	0.85298	16.716	4	0	Median	1294400000	711220000	583130000	8179	1758	7696	16055;16056;16057;16058	39278;39279;39280;39281;39282;39283;39284;39285;39286;39287;39288;39289;39290;39291;39292;39293;39294	39290		17	9606
LDYCMVSDLR	0	1	Oxidation (M)	1286.5635	0.56350803	2551				yes	yes	0	1	0	12	0												1					14.09	14.09	2	0.02441	7723	DP690-12	77.058	41.762	+		0.64343	0.76289	NaN	1	0	Median	45529000	24848000	20682000	8180	2551	7697	16059	39295	39295	2978	1	9606
LDYGQHVVAGTPGR	0	1	Unmodified	1468.7423	0.74227576	696	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	13	0													1				12.956	12.956	3	0.00059989	5919	DP690-13	92.265	78.302			0.70742	0.84065	NaN	1	0	Median	108730000	64177000	44557000	8181	696	7698	16060	39296;39297;39298;39299	39298		4	9606
LDYHKEQAAQLR	1	1	Unmodified	1470.7579	0.75792582	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	1	14	0														1			10.771	10.771	3	6.9714E-05	3171	DP690-14	155	124.14			0.90498	1.0398	NaN	1	0	Median	143760000	73982000	69778000	8182	712	7699	16061	39300;39301;39302	39301		3	9606
LDYILGLK	1	0	Unmodified	933.55352	0.55351892	760	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	15	0															2		18.702	18.702	2	0.020098	13470	DP690-15	111.04	53.224			1.0937	1.2171	NaN	1	0	Median	177600000	61317000	116290000	8183	760	7700	16062;16063	39303;39304;39305	39304		2	9606
LEAALGEAK	1	0	Unmodified	900.49165	0.49164694	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	12	0												1					12.005	12.005	2	0.00070003	4773	DP690-12	139.97	45.964			0.78946	0.88492	NaN	1	0	Median	185960000	104600000	81361000	8184	359	7701	16064	39306;39307;39308	39308		3	9606
LEAASSALGGPTLTHAVTR	0	1	Unmodified	1850.985	0.98502522	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															14.903	14.903	3	3.5542E-10	7548	DP690-2	153.36	105.59			0.89615	0.93359	NaN	1	0	Median	29982000	17154000	12829000	8185	2418	7702	16065	39309;39310;39311;39312	39310		4	9606
LEAATQQNQQLR	0	1	Unmodified	1398.7215	0.72154031	1138	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	11	0											1						11.046	11.046	2	2.3855E-05	3587	DP690-11	200.05	140.7			0.81598	0.97842	NaN	1	0	Median	27668000	15234000	12434000	8186	1138	7703	16066	39313;39314;39315	39313		3	9606
LEAAVAQSEQQGEAALSDAR	0	1	Unmodified	2042.9869	0.98687572	26	CON__O43790;CON__Q14533;O43790;Q14533;CON__Q6NT21;CON__P78385;A6NCN2;P78385	KRT86;KRT81;KRT87P;KRT83	Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb1;Putative keratin-87 protein;Keratin, type II cuticular Hb3	yes	no	0	0	0	7	0							1										16.634	16.634	2	9.4309E-38	10296	DP690-7	289.87	227.41		+	0.7896	0.84662	NaN	1	0	Median	115020000	62626000	52389000	8187	26	7704	16067	39316;39317;39318;39319	39319		4	9606
LEALDANSR	0	1	Unmodified	987.49852	0.49852324	435	P09496	CLTA	Clathrin light chain A	yes	yes	0	0	0	15	0															2		12.183	12.183	2	7.5614E-05	4815	DP690-15	174.52	102.8			0.78404	0.88248	12.148	2	0	Median	158610000	88503000	70106000	8188	435	7705	16068;16069	39320;39321;39322;39323;39324	39321		5	9606
LEALITQTR	0	1	Unmodified	1043.5975	0.597509	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	6.67	3.77				2								1					15.873	15.873	2	0.00051604	8242	DP690-12	150.05	84.807			0.7515	0.86093	7.9572	3	0	Plateau	162180000	95524000	66652000	8189	2342	7706	16070;16071;16072	39325;39326;39327;39328;39329;39330;39331	39327		7	9606
LEALLEAAGIGK	1	0	Unmodified	1183.6812	0.68123863	242	O75179;Q8IWZ3	ANKRD17;ANKHD1	Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1	yes	no	0	0	0	2.5	0.5		1	1														19.074	19.074	2	0.00042531	12426	DP690-2	114.4	55.051			1.1591	1.1423	NaN	1	0	Median	4449800	1187200	3262600	8190	242	7707	16073;16074	39332;39333;39334;39335;39336	39332		5	9606
LEAQAYTAYLSGMLR	0	1	Oxidation (M)	1701.8396	0.83960654	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	1	0	12	0												1					19.24	19.24	2	0.068621	14847	DP690-12	81.565	50.837			NaN	NaN	NaN	0	0	Median	0	0	0	8191	2342	7708	16075	39337	39337		1	9606
LEAQHQALVTLWHQLHVDMK	1	0	Oxidation (M)	2412.2372	0.23723394	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9.5	0.5									1	1							17.692	17.692	5	0.0065498	12073	DP690-9	56.039	56.039			0.83806	0.99694	12.686	2	0	Median	300020000	173180000	126840000	8192	1319	7709	16076;16077	39338;39339;39340;39341	39341	2024	4	9606
LEAQHQALVTLWHQLHVDMK	1	0	Unmodified	2396.2423	0.24231932	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0										1							18.695	18.695	5	0.0025432	14931	DP690-10	62.468	52.225			0.74795	0.92344	NaN	1	0	Median	123880000	72060000	51817000	8193	1319	7709	16078	39342;39343;39344	39342		3	9606
LEATAASSVK	1	0	Unmodified	975.52368	0.52367535	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10	0										1							10.664	10.664	2	0.016854	3182	DP690-10	102.62	49.985			NaN	NaN	NaN	0	0	Median	359210000	0	359210000	8194	2190	7710	16079	39345	39345		1	9606
LEATINELV	0	0	Unmodified	1000.5441	0.54407645	459	P10599	TXN	Thioredoxin	yes	yes	0	0	0	16	0																1	20.589	20.589	1	1.8247E-05	15553	DP690-16	158.08	97.296			NaN	NaN	NaN	0	0	Median	0	0	0	8195	459	7711	16080	39346	39346		1	9606
LECVEPNCR	0	1	Unmodified	1175.5063	0.50632751	1060	Q969Q0;P83881	RPL36AL;RPL36A	60S ribosomal protein L36a-like;60S ribosomal protein L36a	yes	no	0	0	0	12	4								1								1	11.275	11.275	2	0.00031881	3862	DP690-16	159.04	126.31			0.88197	0.99356	3.5292	2	0	Median	152170000	81021000	71147000	8196	1060	7712	16081;16082	39347;39348;39349;39350;39351;39352;39353;39354	39349		8	9606
LEDLLQDAQDEKEQLNEYK	2	0	Unmodified	2320.1071	0.10705043	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0.632									1	3	1						18.607	18.607	2;3	3.7081E-38	14718	DP690-10	251.91	212.03			0.27379	0.2923	62.98	3	0	Plateau	929940000	646100000	283840000	8197	1319	7713	16083;16084;16085;16086;16087	39355;39356;39357;39358;39359;39360;39361;39362;39363;39364;39365	39358		11	9606
LEDLLQDAQDEKEQLNEYKGHLSGLAK	3	0	Unmodified	3083.5411	0.54112292	1319	Q15149	PLEC	Plectin	yes	yes	0	0	2	9.5	0.5									1	1							18.585	18.585	5	4.7771E-05	14690	DP690-10	99.13	77.865			0.71032	0.77062	10.462	2	0	Median	278600000	142770000	135820000	8198	1319	7714	16088;16089	39366;39367	39366		2	9606
LEDSSNQVTQAVAK	1	0	Unmodified	1488.742	0.74200098	765	P46939	UTRN	Utrophin	yes	yes	0	0	0	9.5	0.5									1	1							12.952	12.952	2	3.988E-05	5746	DP690-9	150.46	83.25			1.0447	1.2959	13.579	2	0	Median	55797000	29397000	26400000	8199	765	7715	16090;16091	39368;39369;39370	39369		3	9606
LEEAEKAADESER	1	1	Unmodified	1475.674	0.673981	1028;398;434	P67936;CON__Q3SX28;P07951;P06753;P09493	TPM4;TPM2;TPM3;TPM1	Tropomyosin alpha-4 chain;Tropomyosin beta chain;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain	no	no	0	0	1	15	0															2		10.438	10.438	2;3	0.00028768	2816	DP690-15	106.32	106.32			0.70873	0.78632	NaN	1	0	Median	100710000	56807000	43901000	8200	1028;398;434	7716	16092;16093	39371;39372;39373	39371		3	9606
LEEAEKAADESERGMK	2	1	Oxidation (M)	1807.8258	0.82580697	1028;398;434	P67936;CON__Q3SX28;P07951;P06753;P09493	TPM4;TPM2;TPM3;TPM1	Tropomyosin alpha-4 chain;Tropomyosin beta chain;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain	no	no	0	1	2	15	0															1		10.299	10.299	4	0.004551	2644	DP690-15	69.878	52.314			0.66043	0.7548	NaN	1	0	Median	36615000	21935000	14680000	8201	1028;398;434	7717	16094	39374	39374	431	1	9606
LEEANGNTQMVEK	1	0	Unmodified	1461.677	0.67695789	298	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	11	0											1						11.816	11.816	2	0.032962	4720	DP690-11	92.866	39.115			NaN	NaN	NaN	0	0	Median	0	0	0	8202	298	7718	16095	39375	39375		1	9606
LEEDDGDVAMSDAQDGPR	0	1	Oxidation (M)	1934.78	0.77997899	2324	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	1	0	12	0												1					13.029	13.029	2	0.00031918	6203	DP690-12	114.21	94.468			0.66182	0.80656	NaN	1	0	Median	8451000	3859500	4591500	8203	2324	7719	16096	39376;39377	39376	2774	2	9606
LEEEQIILEDQNCK	1	0	Unmodified	1759.8298	0.82982971	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1															16.39	16.39	2	4.0307E-14	9408	DP690-2	223.77	154.76			1.2564	1.2655	NaN	1	0	Median	10783000	4830500	5952200	8204	668	7720	16097	39378;39379	39379		2	9606
LEEIKENAQDTMR	1	1	Oxidation (M)	1591.7512	0.75118546	1702	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	1	1	4	0				1													10.625	10.625	3	0.0001385	3034	DP690-4	110.92	71.044			1.0233	1.1671	NaN	1	0	Median	15634000	7921400	7712300	8205	1702	7721	16098	39380;39381;39382;39383	39380	2297	4	9606
LEELGLAGR	0	1	Unmodified	956.5291	0.52909508	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	3	0.816		1	1	1													15.108	15.108	2	0.00018183	7903	DP690-2	166.05	68.98			0.75052	0.73927	3.5076	3	0	Plateau	863670000	488860000	374820000	8206	2316	7722	16099;16100;16101	39384;39385;39386;39387;39388;39389;39390;39391;39392;39393;39394;39395;39396	39387		13	9606
LEELQDILAK	1	0	Unmodified	1170.6496	0.64960415	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	2	0		1															18.828	18.828	2	0.0017238	12266	DP690-2	104.01	37.052			0.95081	0.94585	NaN	1	0	Median	3509500	1529600	1979800	8207	283	7723	16102	39397;39398;39399	39398		3	9606
LEENIDNIKR	1	1	Unmodified	1242.6568	0.65681479	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	1	10	0										1							12.241	12.241	3	0.033253	5465	DP690-10	92.239	35.688			NaN	NaN	NaN	0	0	Median	0	0	0	8208	1794	7724	16103	39400	39400		1	9606
LEFFGFEDHETGGDEGGSGSSNYK	1	0	Unmodified	2565.0568	0.056805775	1551	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	10	0										1							18.356	18.356	3	0.00035126	14360	DP690-10	85.387	81.245			0.82395	1.0167	NaN	1	0	Median	105450000	60829000	44621000	8209	1551	7725	16104	39401;39402;39403	39401		3	9606
LEGALGADTTEDGDEK	1	0	Unmodified	1619.7162	0.71623974	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	10	0										1							13.466	13.466	2	1.4624E-17	7248	DP690-10	223.31	181.07			0.6597	0.81421	NaN	1	0	Median	56630000	29183000	27447000	8210	2276	7726	16105	39404;39405	39404		2	9606
LEGALGADTTEDGDEKSLEK	2	0	Unmodified	2076.9699	0.96988825	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	1	10	0										1							13.87	13.87	3	0.00034535	7891	DP690-10	91.067	75.174			0.63298	0.79379	NaN	1	0	Median	75468000	43328000	32139000	8211	2276	7727	16106	39406	39406		1	9606
LEGDLSLADKDVTAK	2	0	Unmodified	1573.8199	0.81991695	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	1	9	0									1								14.597	14.597	2	0.046127	7935	DP690-9	94.767	94.767			0.84253	1.0267	NaN	1	0	Median	6229800	3125400	3104400	8212	1602	7728	16107	39407	39407		0	9606
LEGDLTGPSVDVEVPDVELECPDAK	1	0	Unmodified	2682.2582	0.2582077	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								20.414	20.414	2	6.1362E-10	15361	DP690-9	149.31	127.21			0.39843	0.50178	NaN	1	0	Median	6277400	4417800	1859600	8213	1145	7729	16108	39408;39409;39410;39411	39408		4	9606
LEGDLTGPSVGVEVPDVELECPDAK	1	0	Unmodified	2624.2527	0.25272839	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	10.2	0.829									1	1	2						20.202	20.202	2	2.7815E-56	15082	DP690-9	268.08	244.49			0.60328	0.75625	8.5908	2	0	Median	57916000	40082000	17834000	8214	1145	7730	16109;16110;16111;16112	39412;39413;39414;39415;39416;39417;39418;39419;39420	39419		9	9606
LEGDQISSPR	0	1	Unmodified	1100.5462	0.54620171	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	0	0	8.5	3.2						1	2							1			11.834	11.834	2	9.1164E-05	4405	DP690-14	153.24	100.99			0.79696	0.90954	16.958	2	0	Median	165440000	94350000	71088000	8215	1372	7731	16113;16114;16115;16116	39421;39422;39423;39424;39425;39426;39427;39428;39429;39430;39431	39421		11	9606
LEGELKGPELDVK	2	0	Unmodified	1425.7715	0.7715102	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9.5	0.5									1	1							14.62	14.62	3	0.0019584	8008	DP690-9	93.766	62.418			0.62247	0.71881	1.5863	2	0	Median	269590000	164820000	104770000	8216	1145	7732	16117;16118	39432;39433;39434;39435;39436	39435		5	9606
LEGELQAPDLELSLPAIHVEGLDIK	1	0	Unmodified	2698.4429	0.44291242	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								22.543	22.543	3	0.00024894	17806	DP690-9	77.19	77.19			0.60231	0.76494	NaN	1	0	Median	7665800	5203000	2462700	8217	1145	7733	16119	39437;39438	39437		2	9606
LEGFHTQISK	1	0	Unmodified	1158.6033	0.60332266	1124	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	7	0							2										12.475	12.475	2;3	3.438E-05	5177	DP690-7	220.39	133.21			0.80072	0.86206	2.0366	2	0	Median	98149000	54211000	43938000	8218	1124	7734	16120;16121	39439;39440;39441;39442;39443;39444	39443		6	9606
LEGFLYNNMTEAVK	1	0	Oxidation (M)	1643.7865	0.78650834	2573				yes	yes	0	1	0	14	0														1			14.11	14.11	2	0.010003	7615	DP690-14	78.513	35.01	+		1.2086	1.4666	NaN	1	0	Median	63444000	30206000	33238000	8219	2573	7735	16122	39445;39446;39447;39448;39449;39450;39451	39446	2988	7	9606
LEGFYGER	0	1	Unmodified	969.4556	0.45559579	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										1							14.444	14.444	2	0.038295	8731	DP690-10	101.64	48.857			NaN	NaN	NaN	0	0	Median	46165000	0	46165000	8220	1901	7736	16123	39452	39452		1	9606
LEGGEVDLKGPK	2	0	Unmodified	1240.6663	0.66631685	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9	0									1								12.25	12.25	3	0.0011521	4861	DP690-9	91.123	75.786			0.6659	0.79126	NaN	1	0	Median	16501000	10083000	6417600	8221	1145	7737	16124	39453;39454	39453		2	9606
LEGLGSSEADQDGLASTVR	0	1	Unmodified	1903.9123	0.91231379	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	12	0												1					16.584	16.584	2	1.3573E-42	11231	DP690-12	300.33	220.31			0.77228	0.91355	NaN	1	0	Median	78168000	43204000	34964000	8222	1131	7738	16125	39455;39456;39457;39458	39455		4	9606
LEGLTDEINFLR	0	1	Unmodified	1418.7405	0.74054442	38	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	10.5	3.77				1								1	2				20.983	20.983	2	3.1787E-10	17087	DP690-12	216.12	156.02		+	0.77847	0.91081	0.47697	2	0	Median	41840000	25140000	16700000	8223	38	7739	16126;16127;16128;16129	39459;39460;39461;39462;39463;39464	39459		6	9606
LEGNTVGVEAAR	0	1	Unmodified	1214.6255	0.62551466	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	7.5	4.5			1									1					12.336	12.336	2	0.00012942	5192	DP690-12	175.65	127.69			0.92963	1.0514	10.984	2	0	Median	243730000	130970000	112760000	8224	750	7740	16130;16131	39465;39466;39467;39468;39469;39470;39471;39472	39466		8	9606
LEGQGDVPTPK	1	0	Unmodified	1139.5823	0.58225287	2451	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	6	0						1											12.263	12.263	2	0.0022617	4833	DP690-6	95.775	47.351			0.6806	0.77734	NaN	1	0	Median	8631300	5062000	3569300	8225	2451	7741	16132	39473;39474	39474		2	9606
LEGVEGVAHIIDPK	1	0	Unmodified	1475.7984	0.79839365	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								17.092	17.092	3	0.061405	10251	DP690-2	43.305	43.305			0.85769	0.94812	10.904	2	0	Median	40516000	21354000	19163000	8226	1264	7742	16133;16134	39475;39476;39477	39476		3	9606
LEGVLAEVAQHYQDTLIR	0	1	Unmodified	2054.0797	0.07965389	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	6	4		1								1							20.974	20.974	3	9.3105E-12	18001	DP690-10	172.32	172.32			1.0289	1.1617	32.819	2	0	Median	106540000	66715000	39828000	8227	766	7743	16135;16136	39478;39479;39480;39481;39482;39483	39478		6	9606
LEHEYIHNFK	1	0	Unmodified	1328.6513	0.65133548	2420	Q9UPY8;Q15555	MAPRE3;MAPRE2	Microtubule-associated protein RP/EB family member 3;Microtubule-associated protein RP/EB family member 2	yes	no	0	0	0	14.5	0.5														1	1		11.434	11.434	3	0.00059506	3832	DP690-14	103.88	84.251			0.89334	1.0671	1.0822	2	0	Median	109430000	56937000	52496000	8228	2420	7744	16137;16138	39484;39485;39486;39487;39488;39489	39484		6	9606
LEHEYIQNFK	1	0	Unmodified	1319.651	0.65100113	1345	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	15	0															1		13.419	13.419	3	0.0013204	6599	DP690-15	103.88	46.704			0.83408	0.92937	NaN	1	0	Median	122190000	62204000	59991000	8229	1345	7745	16139	39490;39491;39492;39493	39491		4	9606
LEHGDGGILDLDDILCDVADDKDR	1	1	Unmodified	2668.2286	0.22863891	1727	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	1	10.5	0.5										1	1						21.935	21.935	4	0.0089412	19270	DP690-11	52.654	36.929			0.97473	1.1828	7.5003	2	0	Median	39725000	21656000	18069000	8230	1727	7746	16140;16141	39494;39495	39495		2	9606
LEHQLSLCTQISMLEMR	0	1	2 Oxidation (M)	2120.0064	0.0064306459	1688	Q8NE79	BVES	Blood vessel epicardial substance	yes	yes	0	2	0	2	0		1															15.084	15.084	3	0.030679	7799	DP690-2	48.405	32.093			0.8668	0.90689	NaN	1	0	Median	7643900	4233700	3410200	8231	1688	7747	16142	39496;39497	39496	2288;2289	2	9606
LEILQQQLQVANEAR	0	1	Unmodified	1751.953	0.95299681	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							18.192	18.192	2	1.3208E-15	14177	DP690-10	238.2	205.67			0.72513	0.90575	NaN	1	0	Median	65459000	37035000	28424000	8232	1301	7748	16143	39498;39499	39498		2	9606
LEKEIETYHNLLEGGQEDFESSGAGK	2	0	Unmodified	2879.3461	0.3461115	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	1	0	1																17.572	17.572	4	3.7947E-06	9036	DP690-1	118.08	87.768		+	NaN	NaN	NaN	0	0	Median	5423600	5423600	0	8233	667	7749	16144	39500;39501	39501		2	9606
LELDKYIQGLK	2	0	Unmodified	1318.7497	0.74965254	2154	Q9HAS0	C17orf75	Protein Njmu-R1	yes	yes	0	0	1	13	0													1				18.204	18.204	3	0.010986	13160	DP690-13	99.343	53.514			NaN	NaN	NaN	0	0	Median	16024000	16024000	0	8234	2154	7750	16145	39502	39502		1	9606
LELLAAYEEVIR	0	1	Unmodified	1417.7817	0.78168095	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	0	11	0											1						21.902	21.902	2	0.00019889	19082	DP690-11	140.17	77.623			0.72884	0.87529	NaN	1	0	Median	65524000	37866000	27659000	8235	1365	7751	16146	39503;39504;39505;39506;39507	39503		5	9606
LELLLQIANK	1	0	Unmodified	1153.7071	0.70705945	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								19.813	19.813	2	0.0085656	14650	DP690-9	85.67	52.292			0.69434	0.8539	NaN	1	0	Median	3062500	1571000	1491500	8236	2411	7752	16147	39508	39508		1	9606
LELNYCVPMGVQTGDR	0	1	Oxidation (M)	1866.8604	0.86041834	2494	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	1	0	13	0													1				17.32	17.32	2	0.00051594	11914	DP690-13	111.12	77.253			0.52976	0.65071	NaN	1	0	Median	27715000	14339000	13376000	8237	2494	7753	16148	39509;39510;39511;39512;39513	39512	2930	5	9606
LELQFPR	0	1	Unmodified	901.50215	0.50215205	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										2							17.448	17.448	2	0.047914	13025	DP690-10	133.99	49.629			NaN	NaN	NaN	0	0	Median	0	0	0	8238	781	7754	16149;16150	39514;39515	39514		2	9606
LELQGPR	0	1	Unmodified	811.4552	0.45520186	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11	0											1						12.67	12.67	2	0.05921	5952	DP690-11	124.32	33.547			NaN	NaN	NaN	0	0	Median	0	0	0	8239	534	7755	16151	39516	39516		1	9606
LELQQLQAER	0	1	Unmodified	1226.6619	0.66190017	781	P48681	NES	Nestin	yes	yes	0	0	0	11	1										1		1					15.623	15.623	2	8.7367E-05	10437	DP690-10	159.58	97.003			0.84314	0.98793	NaN	1	0	Median	285480000	147930000	137550000	8240	781	7756	16152;16153	39517;39518	39517		2	9606
LELSVHLQPITR	0	1	Unmodified	1404.8089	0.80889876	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							16.873	16.873	3	0.00063473	12265	DP690-10	96.334	81.981			0.82898	1.029	NaN	1	0	Median	91884000	45321000	46563000	8241	269	7757	16154	39519;39520;39521	39521		3	9606
LENAGGDLKDGHHHYEGAVVILDAGAQYGK	2	0	Unmodified	3133.5217	0.52172488	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	1	3	0			1														15.289	15.289	5	0.080354	9039	DP690-3	23.149	23.149			1.0345	1.119	NaN	1	0	Median	19745000	10918000	8827500	8242	813	7758	16155	39522	39522		1	9606
LENDGATALAEAFR	0	1	Unmodified	1476.7209	0.72087161	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												2					19.015	19.015	2	0.00014635	14579	DP690-12	151.98	76.324			NaN	NaN	NaN	0	0	Median	80683000	43328000	37355000	8243	750	7759	16156;16157	39523;39524;39525	39525		3	9606
LENEIQTYR	0	1	Unmodified	1164.5775	0.57750184	42;30	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	no	no	0	0	0	6.17	5.08	1	1	1				1	1								1	13.385	13.385	2	9.5088E-16	5772	DP690-2	199.7	112.52		+	0.29405	0.33206	NaN	1	0	Median	202240000	194930000	7318600	8244	42;30	7760	16158;16159;16160;16161;16162;16163	39526;39527;39528;39529;39530;39531;39532;39533;39534;39535;39536;39537;39538	39531		13	9606
LENLNEAIEEDIVQSVLRPTNCR	0	2	Unmodified	2711.3548	0.35484247	1551	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	1	10	0										1							22.821	22.821	3	0.00017223	20433	DP690-10	109.5	91.485			0.77208	0.91958	NaN	1	0	Median	62513000	33828000	28685000	8245	1551	7761	16164	39539;39540;39541	39539		3	9606
LENPDEACAVSQK	1	0	Unmodified	1459.6613	0.66130782	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	2	0		1															12.259	12.259	2	0.0031479	4489	DP690-2	89.403	70.872			1.0957	1.0781	NaN	1	0	Median	1829300	921830	907510	8246	1437	7762	16165	39542;39543;39544;39545	39544		4	9606
LENVSVALEFLER	0	1	Unmodified	1517.809	0.80895834	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							22.098	22.098	2	0.00034749	15818	DP690-2	112.13	86.689			1.1321	1.1584	NaN	1	0	Median	18765000	18007000	757630	8247	1270	7763	16166;16167;16168	39546;39547;39548;39549;39550;39551	39548		6	9606
LEPAFLSGLR	0	1	Unmodified	1101.6182	0.61824444	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	10	0										1							18.926	18.926	2	0.013859	15324	DP690-10	78.264	37.382			0.23018	0.28812	NaN	1	0	Median	58566000	47144000	11421000	8248	2483	7764	16169	39552;39553;39554;39555	39554		4	9606
LEPGGGAEAQAVR	0	1	Unmodified	1253.6364	0.6364137	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	9.44	4.09		1	1						1	2	1	1	1		1		11.784	11.784	2	2.0207E-05	4761	DP690-10	180.09	112.6			0.75938	0.88889	18.542	6	0	Median	715710000	411970000	303730000	8249	1270	7765	16170;16171;16172;16173;16174;16175;16176;16177;16178	39556;39557;39558;39559;39560;39561;39562;39563;39564;39565;39566;39567;39568;39569;39570;39571;39572;39573;39574	39557		19	9606
LEPKPQPPVAEATPR	1	1	Unmodified	1628.8886	0.88860564	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	1	12	0												1					12.082	12.082	3	0.0002688	4901	DP690-12	104.09	82.231			0.57636	0.68266	NaN	1	0	Median	87670000	54129000	33541000	8250	2344	7766	16179	39575;39576	39576		2	9606
LEPNAQAQMYR	0	1	Oxidation (M)	1335.6241	0.62413446	339	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	1	0	11	0											1						11.813	11.813	2	0.073236	4715	DP690-11	78.149	31.759			NaN	NaN	NaN	0	0	Median	0	0	0	8251	339	7767	16180	39577	39577		1	9606
LEPQIASASEYAHR	0	1	Unmodified	1570.774	0.77396981	213	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	5	0					1												13.8	13.8	3	0.027977	6663	DP690-5	54.094	33.361			0.84421	0.8815	NaN	1	0	Median	44642000	18470000	26172000	8252	213	7768	16181	39578	39578		1	9606
LEPSESLEENQR	0	1	Unmodified	1429.6685	0.66850169	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	10	0										1							13.093	13.093	2	0.026913	6801	DP690-10	93.258	53.256			NaN	NaN	NaN	0	0	Median	18565000	0	18565000	8253	550	7769	16182	39579	39579		1	9606
LEQDEYALR	0	1	Unmodified	1135.551	0.55095274	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	9	4					1								1				13.941	13.941	2	0.00057168	6795	DP690-5	133.12	51.82			0.97197	1.0547	27.02	2	0	Median	341380000	186480000	154900000	8254	894	7770	16183;16184	39580;39581;39582;39583;39584;39585	39584		6	9606
LEQDQTSAQLQVQK	1	0	Unmodified	1614.8213	0.82131394	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9.5	0.5									1	1							12.744	12.744	2	4.7462E-16	6240	DP690-10	254.19	214.32			0.81459	1.0203	12.516	2	0	Median	55311000	27711000	27600000	8255	1102	7771	16185;16186	39586;39587;39588;39589;39590;39591;39592;39593	39586		8	9606
LEQDQTTAQLQVQK	1	0	Unmodified	1628.837	0.836964	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9.5	0.5									1	1							13.134	13.134	2	4.8191E-15	6005	DP690-9	271.21	206.05			0.74359	0.95119	NaN	1	0	Median	28348000	23398000	4950000	8256	2411	7772	16187;16188	39594;39595;39596;39597;39598	39595		5	9606
LEQEIQTLESEESQISAK	1	0	Unmodified	2061.0114	0.011359132	20	C9JA33;Q8IXS6	PALM2	Paralemmin-2	yes	no	0	0	0	10	0										1							18.82	18.82	2	6.0324E-13	15084	DP690-10	183.28	153.97			0.99594	1.232	NaN	1	0	Median	69366000	40288000	29078000	8257	20	7773	16189	39599;39600;39601;39602	39600		4	9606
LEQELFSGGNTGINFEK	1	0	Unmodified	1881.9109	0.91085723	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	8.33	3.3				1					1			1					18.782	18.782	2	1.5744E-22	13246	DP690-4	250.81	193.64			0.95309	1.0583	8.2309	2	0	Median	187570000	94311000	93263000	8258	96	7774	16190;16191;16192	39603;39604;39605;39606;39607;39608;39609;39610	39606		8	9606
LEQLFQDEVAK	1	0	Unmodified	1318.6769	0.67688153	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							16.686	16.686	2	0.00013845	10703	DP690-9	173.37	99.206			0.52121	0.62818	NaN	1	0	Median	82771000	23375000	59396000	8259	1319	7775	16193;16194	39611;39612;39613	39613		3	9606
LEQMMEASVR	0	1	2 Oxidation (M)	1224.5479	0.54785797	1519	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	2	0	2	0		1															10.456	10.456	2	0.019152	2520	DP690-2	78.939	57.411			1.2054	1.2623	NaN	1	0	Median	5731000	2542900	3188100	8260	1519	7776	16195	39614;39615	39615	2201;2202	2	9606
LEQPDLSSEMSK	1	0	Unmodified	1362.6337	0.63369609	1734	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	11	0											1						15.078	15.078	2	0.0050811	9490	DP690-11	115.78	70.62			NaN	NaN	NaN	0	0	Median	19287000	0	19287000	8261	1734	7777	16196	39616	39616		1	9606
LEQQLVHVER	0	1	Unmodified	1249.6779	0.67788459	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	5	0					1												12.496	12.496	3	0.0060864	5045	DP690-5	74.944	48.271			0.69668	0.72363	NaN	1	0	Median	78427000	46800000	31627000	8262	2385	7778	16197	39617;39618	39617		2	9606
LEQQLVHVERPILR	0	2	Unmodified	1728.9999	0.99988743	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	1	4.67	0.471				1	2												14.297	14.297	3;4	8.0036E-06	7186	DP690-5	130.1	116.68			0.77467	0.76485	8.3196	3	0	Plateau	1069699999.9999999	632960000	436690000	8263	2385	7779	16198;16199;16200	39619;39620;39621;39622;39623;39624;39625;39626;39627;39628;39629;39630	39626		12	9606
LEQSTLHVHQSQQQALR	0	1	Unmodified	2002.0344	0.034435032	1646	Q8N2G8	GHDC	GH3 domain-containing protein	yes	yes	0	0	0	4	0				2													10.75	10.75	3;4	0.00077114	3212	DP690-4	83.823	66.944			0.90717	1.0533	3.9757	2	0	Median	13674000	7186800	6487200	8264	1646	7780	16201;16202	39631;39632;39633	39631		3	9606
LEQYTSAIEGTK	1	0	Unmodified	1338.6667	0.66671078	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	11.2	0.433											3	1					14.266	14.266	2	2.8029E-17	8285	DP690-11	202.56	114.92			0.89376	1.0567	NaN	1	0	Median	365630000	329390000	36242000	8265	1119	7781	16203;16204;16205;16206	39634;39635;39636;39637;39638;39639;39640	39634		7	9606
LESDYEILER	0	1	Unmodified	1265.6139	0.61394692	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	6.5	3.5			1							1							16.781	16.781	2	2.2426E-05	12184	DP690-10	177.7	111.35			0.88789	1.1002	NaN	1	0	Median	111020000	62393000	48625000	8266	721	7782	16207;16208	39641;39642;39643;39644;39645	39642		5	9606
LESEEEGVPSTAIR	0	1	Unmodified	1515.7417	0.74166663	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	10	4						1								1			14.19	14.19	2	3.461E-05	7854	DP690-14	172.56	117.01			1.1945	1.3805	23.245	2	0	Median	180850000	89885000	90960000	8267	391	7783	16209;16210	39646;39647;39648;39649;39650;39651;39652;39653	39647		8	9606
LESEGSPETLTNLR	0	1	Unmodified	1544.7682	0.76821574	2287	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	10	0										1							15.751	15.751	2	6.2142E-25	10613	DP690-10	211.64	109.02			NaN	NaN	NaN	0	0	Median	55254000	55254000	0	8268	2287	7784	16211	39654;39655	39654		2	9606
LESENDEYER	0	1	Unmodified	1282.5313	0.53133951	298	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	11	0											1						11.08	11.08	2	1.963E-05	3693	DP690-11	200.6	178.58			0.85213	1.0201	NaN	1	0	Median	53696000	29485000	24212000	8269	298	7785	16212	39656;39657;39658;39659;39660;39661	39657		6	9606
LESGMQNMSIHTK	1	0	Oxidation (M)	1490.6857	0.68574843	38	CON__P05787;P05787;CON__REFSEQ:XP_092267	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	1	0	13	0													1				10.588	10.588	3	0.040775	2946	DP690-13	53.136	28.441		+	1.2294	1.3996	NaN	1	0	Median	114460000	47973000	66490000	8270	38	7786	16213	39662	39662	40	1	9606
LESIISGAALMADSSCTR	0	1	Unmodified	1880.8972	0.89719777	657;590	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	11	0											1						19.665	19.665	2	5.0002E-11	16132	DP690-11	166.62	140.61			1.0328	1.2344	NaN	1	0	Median	49115000	25838000	23278000	8271	657;590	7787	16214	39663;39664;39665	39663		3	9606
LESIISGAALMADSSCTR	0	1	Oxidation (M)	1896.8921	0.89211239	657;590	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	1	0	11	0											2						17.65	17.65	2	2.1533E-05	13253	DP690-11	149.32	111.36			NaN	NaN	NaN	0	0	Median	25518000	25518000	0	8272	657;590	7787	16215;16216	39666;39667;39668	39666	779	3	9606
LESLSAATTFEPLEPVKDTDIQGFLK	2	0	Unmodified	2848.4746	0.47460648	1643	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	1	11	0											1						21.517	21.517	3	1.5923E-05	18619	DP690-11	123.17	99.783			0.68948	0.8136	NaN	1	0	Median	45950000	28430000	17520000	8273	1643	7788	16217	39669;39670;39671	39669		3	9606
LESNNYNTYR	0	1	Unmodified	1272.5735	0.57347909	430	P09038	FGF2	Fibroblast growth factor 2	yes	yes	0	0	0	13	3.56								1							1	1	11.973	11.973	2	0.0018063	4609	DP690-15	137.14	84.653			NaN	NaN	NaN	0	0	Median	18934000	18934000	0	8274	430	7789	16218;16219;16220	39672;39673;39674;39675;39676	39673		5	9606
LESYEITMNGFNLFK	1	0	Oxidation (M)	1820.8655	0.86548694	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	1	0	2	0		1															20.881	20.881	2	0.0067469	14523	DP690-2	80.979	60.316			1.2039	1.1858	NaN	1	0	Median	2480400	1106100	1374300	8275	2418	7790	16221	39677	39677	2845	1	9606
LETGQFLTFR	0	1	Unmodified	1210.6346	0.63462279	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														18.781	18.781	2	3.9606E-05	13551	DP690-3	173.39	137.45			0.82218	0.89749	NaN	1	0	Median	57446000	31825000	25621000	8276	5	7791	16222	39678;39679;39680;39681	39679		4	9606
LETLGSASTSTPGR	0	1	Unmodified	1375.6943	0.69432251	1851	Q96FF9	CDCA5	Sororin	yes	yes	0	0	0	14	0														2			13.07	13.07	2	0.00022452	6184	DP690-14	148.28	99.997			NaN	NaN	NaN	0	0	Median	9523900	9523900	0	8277	1851	7792	16223;16224	39682;39683	39682		2	9606
LETVGSIFSR	0	1	Unmodified	1107.5924	0.59242362	2470	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	15	0															1		17.777	17.777	2	0.00016185	12331	DP690-15	155.58	80.541			NaN	NaN	NaN	0	0	Median	33784000	33784000	0	8278	2470	7793	16225	39684;39685	39685		2	9606
LEVAQTQAPAATGGEAAAK	1	0	Unmodified	1782.9112	0.91119158	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	10.5	0.5										1	1						12.97	12.97	2	1.2549E-09	6470	DP690-10	179.55	80.314			0.83028	1.0244	NaN	1	0	Median	110920000	54567000	56351000	8279	1602	7794	16226;16227	39686;39687;39688	39686		3	9606
LEVEANNAFDQYR	0	1	Unmodified	1567.7267	0.72668527	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	14.3	0.471														2	1		16.58	16.58	2	4.4891E-09	10882	DP690-15	212.72	165.12			0.78964	0.91076	NaN	1	0	Median	211120000	117060000	94066000	8280	769	7795	16228;16229;16230	39689;39690;39691;39692;39693;39694	39694		6	9606
LEVLESQLSEGSQK	1	0	Unmodified	1545.7886	0.78861683	2031	Q9BWT6	MND1	Meiotic nuclear division protein 1 homolog	yes	yes	0	0	0	15	0															1		15.865	15.865	2	0.0012291	9960	DP690-15	137.01	73.579			NaN	NaN	NaN	0	0	Median	4454100	4454100	0	8281	2031	7796	16231	39695;39696	39696		2	9606
LEVNLQAMK	1	0	Oxidation (M)	1060.5587	0.55868065	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															13.772	13.772	2	0.0013952	6268	DP690-2	129.68	50.232			1.1629	1.1824	NaN	1	0	Median	57792000	25592000	32200000	8282	668	7797	16232	39697;39698;39699;39700;39701	39700	956	5	9606
LEVNLQAMK	1	0	Unmodified	1044.5638	0.56376603	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		2															16.238	16.238	2	0.033755	9185	DP690-2	113.7	22.919			NaN	NaN	NaN	0	0	Median	0	0	0	8283	668	7797	16233;16234	39702;39703	39702		2	9606
LEWFSTLFPR	0	1	Unmodified	1294.671	0.67100829	1447	Q5VTL8	PRPF38B	Pre-mRNA-splicing factor 38B	yes	yes	0	0	0	10.8	1.09									1		2	1					22.854	22.854	2	0.00019372	20218	DP690-11	128.36	80.402			0.77019	0.91587	10.935	3	0	Median	17185000	7482500	9702200	8284	1447	7798	16235;16236;16237;16238	39704;39705;39706;39707;39708;39709;39710;39711;39712;39713	39706		10	9606
LEYGDNAEKYK	2	0	Unmodified	1328.6248	0.62484596	2426	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	1	15	0															1		11.567	11.567	3	0.016453	4229	DP690-15	65.241	45.785			1.0384	1.1882	NaN	1	0	Median	11914000	6099800	5814600	8285	2426	7799	16239	39714;39715	39715		2	9606
LEYNYNSHNVYIMADK	1	0	Oxidation (M)	1988.8938	0.89382695	57	CON__Q9U6Y5			yes	yes	0	1	0	6.5	2.21		2	2	2	25	13	35	4	2				3		2		19.798	19.798	2;3	1.0538E-17	8271	DP690-13	194.23	141.44		+	0.46975	0.52342	226.54	26	0	Median	128530000000	62228000000	66303000000	8286	57	7800	16240;16241;16242;16243;16244;16245;16246;16247;16248;16249;16250;16251;16252;16253;16254;16255;16256;16257;16258;16259;16260;16261;16262;16263;16264;16265;16266;16267;16268;16269;16270;16271;16272;16273;16274;16275;16276;16277;16278;16279;16280;16281;16282;16283;16284;16285;16286;16287;16288;16289;16290;16291;16292;16293;16294;16295;16296;16297;16298;16299;16300;16301;16302;16303;16304;16305;16306;16307;16308;16309;16310;16311;16312;16313;16314;16315;16316;16317;16318;16319;16320;16321;16322;16323;16324;16325;16326;16327;16328;16329	39716;39717;39718;39719;39720;39721;39722;39723;39724;39725;39726;39727;39728;39729;39730;39731;39732;39733;39734;39735;39736;39737;39738;39739;39740;39741;39742;39743;39744;39745;39746;39747;39748;39749;39750;39751;39752;39753;39754;39755;39756;39757;39758;39759;39760;39761;39762;39763;39764;39765;39766;39767;39768;39769;39770;39771;39772;39773;39774;39775;39776;39777;39778;39779;39780;39781;39782;39783;39784;39785;39786;39787;39788;39789;39790;39791;39792;39793;39794;39795;39796;39797;39798;39799;39800;39801;39802;39803;39804;39805;39806;39807;39808;39809;39810;39811;39812;39813;39814;39815;39816;39817;39818;39819;39820;39821;39822;39823;39824;39825;39826;39827;39828;39829;39830;39831;39832;39833;39834;39835;39836;39837;39838;39839;39840;39841;39842;39843;39844;39845;39846;39847;39848;39849;39850;39851;39852;39853;39854;39855;39856;39857;39858;39859;39860;39861;39862;39863;39864;39865;39866;39867;39868;39869;39870;39871;39872;39873;39874;39875;39876;39877;39878;39879;39880;39881;39882;39883;39884;39885;39886;39887;39888;39889;39890;39891;39892;39893;39894;39895;39896;39897;39898;39899;39900;39901;39902;39903;39904;39905;39906;39907;39908;39909;39910;39911;39912;39913;39914;39915;39916;39917;39918;39919;39920;39921	39717	61	205	
LEYNYNSHNVYIMADK	1	0	Unmodified	1972.8989	0.89891233	57	CON__Q9U6Y5			yes	yes	0	0	0	6.17	2.24		2	2	2	19	6	17	2	1				2	1			22.294	22.294	2;3	8.3871E-26	9923	DP690-13	216.54	167.19		+	3.2822	3.483	242.64	11	0	Median	60550000000	29466000000	31084000000	8287	57	7800	16330;16331;16332;16333;16334;16335;16336;16337;16338;16339;16340;16341;16342;16343;16344;16345;16346;16347;16348;16349;16350;16351;16352;16353;16354;16355;16356;16357;16358;16359;16360;16361;16362;16363;16364;16365;16366;16367;16368;16369;16370;16371;16372;16373;16374;16375;16376;16377;16378;16379;16380;16381;16382;16383	39922;39923;39924;39925;39926;39927;39928;39929;39930;39931;39932;39933;39934;39935;39936;39937;39938;39939;39940;39941;39942;39943;39944;39945;39946;39947;39948;39949;39950;39951;39952;39953;39954;39955;39956;39957;39958;39959;39960;39961;39962;39963;39964;39965;39966;39967;39968;39969;39970;39971;39972;39973;39974;39975;39976;39977;39978;39979;39980;39981;39982;39983;39984;39985;39986;39987;39988;39989;39990;39991;39992;39993;39994;39995;39996;39997;39998;39999;40000;40001;40002;40003;40004;40005;40006;40007;40008;40009;40010;40011;40012;40013;40014;40015;40016;40017;40018;40019;40020;40021;40022;40023;40024;40025;40026;40027;40028;40029;40030;40031;40032;40033;40034;40035;40036;40037;40038;40039;40040;40041;40042;40043;40044;40045;40046;40047;40048;40049;40050;40051	39924		130	
LEYNYNSHNVYIMADKQK	2	0	Oxidation (M)	2245.0474	0.047367483	57	CON__Q9U6Y5			yes	yes	0	1	1	6.75	0.968					1	2	3	2									13.441	13.441	2;3;4	1.0789E-13	6252	DP690-5	189.59	165		+	0.10856	0.11907	273.85	4	0	Median	8393899999.999999	7614199999.999999	779740000	8288	57	7801	16384;16385;16386;16387;16388;16389;16390;16391	40052;40053;40054;40055;40056;40057;40058;40059;40060;40061;40062;40063;40064;40065;40066;40067;40068;40069;40070;40071;40072;40073	40053	61	22	
LEYNYNSHNVYIMADKQK	2	0	Unmodified	2229.0525	0.052452861	57	CON__Q9U6Y5			yes	yes	0	0	1	6.6	1.02					1	1	2	1									14.403	14.403	3;4	0.0083852	7658	DP690-7	96.805	60.212		+	NaN	NaN	NaN	0	0	Median	1928199999.9999998	1842999999.9999998	85205000	8289	57	7801	16392;16393;16394;16395;16396	40074;40075;40076;40077;40078;40079;40080;40081;40082	40081		9	
LEYNYNSHNVYIMADKQKNGIK	3	0	Oxidation (M)	2657.2908	0.29078565	57	CON__Q9U6Y5			yes	yes	0	1	2	7	0							1										13.163	13.163	5	0.0011324	6108	DP690-7	95.307	79.906		+	NaN	NaN	NaN	0	0	Median	52250000	52250000	0	8290	57	7802	16397	40083	40083	61	1	
LFAAYNEGIINLLEK	1	0	Unmodified	1706.9243	0.92432245	1214	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	12	0												1					22.45	22.45	2	1.512E-05	18877	DP690-12	132.86	132.86			0.98829	1.2	NaN	1	0	Median	7045500	3802100	3243400	8291	1214	7803	16398	40084;40085;40086;40087	40085		4	9606
LFADAVQELLPQYK	1	0	Unmodified	1633.8716	0.87155859	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	11	0											1						21.904	21.904	2	7.8671E-14	19039	DP690-11	216.91	179.31			0.76764	0.93067	NaN	1	0	Median	71694000	40754000	30940000	8292	653	7804	16399	40088;40089;40090;40091;40092	40091		5	9606
LFALVLTPTR	0	1	Unmodified	1129.6859	0.68593008	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	13	0													1				19.833	19.833	2	8.6507E-05	15308	DP690-13	161.02	128.67			0.76635	0.88527	NaN	1	0	Median	186440000	103800000	82634000	8293	2090	7805	16400	40093;40094;40095;40096;40097;40098	40097		6	9606
LFAQLAGDDMEVSATELMNILNK	1	0	2 Oxidation (M)	2554.2295	0.22949053	373	P04632	CAPNS1	Calpain small subunit 1	yes	yes	0	2	0	7	0							1										22.197	22.197	2	0.00012737	17185	DP690-7	123.72	108.52			0.67797	0.71945	NaN	1	0	Median	2304800	1120200	1184600	8294	373	7806	16401	40099;40100;40101;40102;40103	40101	396;397	5	9606
LFCDFGDEFEVLDTTGEEPK	1	0	Unmodified	2347.0202	0.020209259	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														22.411	22.411	2	7.4606E-10	18008	DP690-3	155.43	144.33			0.77787	0.81337	NaN	1	0	Median	3307000	1863000	1444000	8295	5	7807	16402	40104;40105;40106;40107;40108	40107		5	9606
LFDHPESPTPNPTEPLFLAQAEVYK	1	0	Unmodified	2839.4069	0.40686127	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														20.401	20.401	3	2.2452E-10	13928	DP690-2	148.4	120.25			0.56449	0.5712	NaN	1	0	Median	24527000	16147000	8379800	8296	789	7808	16403;16404	40109;40110;40111;40112;40113;40114;40115	40112		7	9606
LFDIRPIWSR	0	2	Unmodified	1301.7244	0.72444085	2503	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	1	12	0												1					19.438	19.438	3	0.019377	15152	DP690-12	64.841	34.914			0.74	0.83904	NaN	1	0	Median	14313000	8045700	6267300	8297	2503	7809	16405	40116;40117;40118;40119	40119		4	9606
LFDLLNK	1	0	Unmodified	861.496	0.49600404	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11	0											1						18.684	18.684	2	0.07518	14716	DP690-11	97.473	28.089			NaN	NaN	NaN	0	0	Median	15289000	15289000	0	8298	1950	7810	16406	40120	40120		1	9606
LFDLLNKK	2	0	Unmodified	989.59097	0.59096706	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	1	11	0											1						15.89	15.89	2	0.058059	10662	DP690-11	124.59	26.992			0.98652	1.1431	NaN	1	0	Median	78361000	37582000	40779000	8299	1950	7811	16407	40121	40121		0	9606
LFDQAFGLPR	0	1	Unmodified	1162.6135	0.61349341	374	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	11	4							1								1		19.372	19.372	2	9.6008E-05	13703	DP690-7	145.16	73.017			1.1578	1.2771	2.4824	2	0	Median	176660000	77739000	98923000	8300	374	7812	16408;16409	40122;40123;40124;40125;40126;40127	40125		6	9606
LFDRGDFYTAHGEDALLAAR	0	2	Unmodified	2237.0865	0.086530182	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	1	3	0			1														17.535	17.535	4	0.08149	12040	DP690-3	30.428	15.814			0.68726	0.71096	NaN	1	0	Median	6416200	2879300	3536900	8301	736	7813	16410	40128	40128		1	9606
LFDSICNNK	1	0	Unmodified	1109.5175	0.51754412	377;426	P08754;P63096;P04899	GNAI3;GNAI1;GNAI2	Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(i) subunit alpha-2	no	no	0	0	0	14	0														1			14.597	14.597	2	0.0007013	8323	DP690-14	139.88	100.23			0.90202	1.0915	NaN	1	0	Median	76126000	40822000	35304000	8302	426;377	7814	16411	40129;40130;40131;40132;40133	40130		5	9606
LFDSTTLEHQK	1	0	Unmodified	1317.6565	0.65648044	1199	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	14	0														1			13.51	13.51	3	0.016659	6847	DP690-14	51.286	40.288			0.98057	1.1819	NaN	1	0	Median	98563000	38273000	60290000	8303	1199	7815	16412	40134;40135	40134		2	9606
LFDWANTSR	0	1	Unmodified	1108.5302	0.53015772	2235	Q9NVI7;Q5T9A4;Q5T2N8	ATAD3A;ATAD3B;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3C	yes	no	0	0	0	12	0												1					17.558	17.558	2	0.001952	12610	DP690-12	115.49	52.912			1.0647	1.2648	NaN	1	0	Median	58334000	24757000	33577000	8304	2235	7816	16413	40136;40137	40137		2	9606
LFDYSKPSAK	2	0	Unmodified	1154.5972	0.59717465	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	1	13	0													1				12.466	12.466	3	5.4723E-05	5147	DP690-13	137.05	83.922			0.66282	0.75135	NaN	1	0	Median	30180000	15609000	14571000	8305	1114	7817	16414	40138;40139;40140;40141	40139		4	9606
LFEAEAQDLFR	0	1	Unmodified	1337.6616	0.66156582	2099	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	0	0	12	0												1					20.039	20.039	2	0.052378	15896	DP690-12	87.149	44.958			NaN	NaN	NaN	0	0	Median	0	0	0	8306	2099	7818	16415	40142	40142		1	9606
LFEDDEHEKEQYCIR	1	1	Unmodified	2009.8789	0.87890517	2438	Q9Y2D5	AKAP2	A-kinase anchor protein 2	yes	yes	0	0	1	11	0											1						13.892	13.892	4	0.064142	7736	DP690-11	68.277	45.293			0.91169	1.0208	NaN	1	0	Median	185640000	101040000	84602000	8307	2438	7819	16416	40143	40143		0	9606
LFEEPEDPSNR	0	1	Unmodified	1331.5994	0.59935949	1015	P63151;Q9Y2T4	PPP2R2A;PPP2R2C	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform	yes	no	0	0	0	4.5	0.5				1	1												14.271	14.271	2	0.0001201	7610	DP690-4	148.69	98.65			1.4735	1.6748	NaN	1	0	Median	24723000	9115400	15608000	8308	1015	7820	16417;16418	40144;40145;40146;40147;40148;40149;40150;40151	40146		8	9606
LFEFAGYDVLR	0	1	Unmodified	1328.6765	0.6764876	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	8	4				1								1					21.338	21.338	2	7.1227E-05	16194	DP690-4	130.66	83.574			0.99976	1.1757	24.675	2	0	Median	28028000	14543000	13485000	8309	886	7821	16419;16420	40152;40153;40154;40155	40155		4	9606
LFEGNALLR	0	1	Unmodified	1031.5764	0.57637963	760	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	15	0															1		17.229	17.229	2	0.00045942	11625	DP690-15	152.63	83.847			0.9265	0.96143	NaN	1	0	Median	511740000	266550000	245180000	8310	760	7822	16421	40156;40157;40158;40159	40156		4	9606
LFEHYYQELK	1	0	Unmodified	1368.6714	0.67140222	1141	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	3	0			1														16.119	16.119	3	0.00021132	10254	DP690-3	115.23	87.804			1.3084	1.3988	NaN	1	0	Median	14137000	6805100	7331500	8311	1141	7823	16422	40160;40161	40160		2	9606
LFEISDIVIK	1	0	Unmodified	1175.6802	0.680176	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	10.5	3.25				1					1			3		1			21.135	21.135	2	6.79E-05	17202	DP690-12	166.3	111.57			0.96635	1.0784	20.66	3	0	Median	297240000	143830000	153410000	8312	2210	7824	16423;16424;16425;16426;16427;16428	40162;40163;40164;40165;40166;40167;40168;40169;40170;40171;40172;40173;40174;40175;40176;40177	40164		16	9606
LFEISDIVIKDSNTDVGAK	2	0	Unmodified	2063.0787	0.078650837	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	1	12	0												3					19.441	19.441	3	0.00082625	15060	DP690-12	140.28	104.25			NaN	NaN	NaN	0	0	Median	35609000	35609000	0	8313	2210	7825	16429;16430;16431	40178;40179;40180;40181	40178		4	9606
LFEYGGFPPESNYLFLGDYVDR	0	1	Unmodified	2597.2115	0.21145592	963;683	P62136;P36873	PPP1CA;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	6	0						1											23.914	23.914	2	0.00017414	18321	DP690-6	116.93	84.675			NaN	NaN	NaN	0	0	Median	935950	0	935950	8314	963;683	7826	16432	40182;40183;40184	40182		3	9606
LFEYKEDSK	2	0	Unmodified	1157.5605	0.56045479	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	1	4	0				2													11.972	11.972	2;3	0.00051829	4575	DP690-4	111.46	85.834			0.7741	0.79848	4.6928	2	0	Median	28495000	15355000	13140000	8315	353	7827	16433;16434	40185;40186;40187;40188;40189;40190;40191;40192	40189		8	9606
LFFAGEHTIR	0	1	Unmodified	1189.6244	0.62439245	205	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	11	0											1						14.901	14.901	3	0.0036338	9216	DP690-11	84.817	58.772			3.365	4.068	NaN	1	0	Median	22015000	6942500	15073000	8316	205	7828	16435	40193	40193		1	9606
LFFHCSQYNGNLQDLK	1	0	Unmodified	1982.9309	0.93088116	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	11	0											1						16.826	16.826	3	0.0082056	12042	DP690-11	62.055	37.575			0.91856	1.1223	NaN	1	0	Median	24116000	11987000	12129000	8317	264	7829	16436	40194;40195	40194		2	9606
LFFPVIYDVK	1	0	Unmodified	1239.6903	0.69034675	2356	Q9UIV1	CNOT7	CCR4-NOT transcription complex subunit 7	yes	yes	0	0	0	15	0															1		21.743	21.743	2	0.057552	17098	DP690-15	85.731	34.671			NaN	NaN	NaN	0	0	Median	2517100	2517100	0	8318	2356	7830	16437	40196	40196		1	9606
LFFVSVIQTEVPPLFVIEFLHR	0	1	Unmodified	2629.4672	0.4672171	2447	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	13	0													1				26.482	26.482	3	0.016907	22827	DP690-13	50.397	36.716			0.87063	0.99992	NaN	1	0	Median	1763600	861880	901750	8319	2447	7831	16438	40197;40198;40199	40198		3	9606
LFGAVEHLQLANSYGLFR	0	1	Unmodified	2034.0687	0.068695273	2007	Q9BU23	LMF2	Lipase maturation factor 2	yes	yes	0	0	0	9	0									1								20.439	20.439	3	4.5988E-05	15407	DP690-9	118.23	103.54			0.93863	1.1756	NaN	1	0	Median	8025400	4129100	3896300	8320	2007	7832	16439	40200;40201;40202;40203	40200		4	9606
LFGEGYSGLEYDYR	0	1	Unmodified	1667.7468	0.74675201	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	4	0				1													19.009	19.009	2	2.278E-12	13551	DP690-4	192.44	150.44			NaN	NaN	NaN	0	0	Median	27015000	0	27015000	8321	1784	7833	16440	40204;40205	40205		2	9606
LFGETDYDAFQR	0	1	Unmodified	1460.6572	0.65720872	1949	Q99633	PRPF18	Pre-mRNA-splicing factor 18	yes	yes	0	0	0	14	0														1			18.316	18.316	2	0.0013337	13456	DP690-14	112.36	85.915			0.84541	1.0239	NaN	1	0	Median	41662000	18367000	23295000	8322	1949	7834	16441	40206;40207;40208	40208		3	9606
LFGEVTRPTNSK	1	1	Unmodified	1347.7147	0.71466402	2435	Q9Y291	MRPS33	28S ribosomal protein S33, mitochondrial	yes	yes	0	0	1	16	0																1	12.358	12.358	3	0.0027566	5143	DP690-16	80.871	34.991			0.66514	0.75103	NaN	1	0	Median	16666000	10208000	6457200	8323	2435	7835	16442	40209;40210;40211	40210		3	9606
LFIFETFCR	0	1	Unmodified	1231.606	0.6059652	920	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	13	0													1				21.241	21.241	2	0.0005757	17026	DP690-13	147.34	130.31			0.83267	1.0264	NaN	1	0	Median	18915000	9917500	8997100	8324	920	7836	16443	40212;40213;40214;40215	40212		4	9606
LFIGGLNTETNEK	1	0	Unmodified	1434.7355	0.73545904	692	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	0	0	13	0													1				16.936	16.936	2	2.9915E-08	11337	DP690-13	202.96	125.43			0.8557	0.95833	NaN	1	0	Median	174910000	90274000	84640000	8325	692	7837	16444	40216;40217;40218	40217		3	9606
LFIGGLNVQTSESGLR	0	1	Unmodified	1689.905	0.90498399	1186	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	14	0														1			19.382	19.382	2	1.0217E-05	14812	DP690-14	127.17	87.257			0.99058	1.1741	NaN	1	0	Median	122590000	58385000	64200000	8326	1186	7838	16445	40219;40220	40219		2	9606
LFIGGLPNYLNDDQVK	1	0	Unmodified	1804.9359	0.93594977	592	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	12	0												1					20.801	20.801	2	0.00025821	16851	DP690-12	113.95	113.95			0.7269	0.87393	NaN	1	0	Median	18873000	10789000	8083600	8327	592	7839	16446	40221;40222;40223;40224;40225	40224		5	9606
LFIGGLSFETTDESLR	0	1	Unmodified	1783.8992	0.89922991	437	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	14	0														1			21.415	21.415	2	4.0897E-12	17373	DP690-14	211.46	161.43			0.86335	1.0293	NaN	1	0	Median	109020000	58652000	50368000	8328	437	7840	16447	40226;40227;40228	40226		3	9606
LFIGGLSFETTEESLR	0	1	Unmodified	1797.9149	0.91487997	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	14	0														1			21.474	21.474	2	3.2837E-22	17433	DP690-14	234.3	202.46			0.90136	1.0676	NaN	1	0	Median	124350000	63375000	60971000	8329	563	7841	16448	40229;40230	40229		2	9606
LFIPNDFFK	1	0	Unmodified	1139.6015	0.60153174	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								21.133	21.133	2	0.056431	16226	DP690-9	65.465	31.293			0.46588	0.56509	NaN	1	0	Median	2399700	1462100	937610	8330	2272	7842	16449	40231	40231		1	9606
LFIVESNSSSSTR	0	1	Unmodified	1425.71	0.70997257	777	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	0	7	0							1										14.971	14.971	2	8.3217E-06	8238	DP690-7	189.57	189.57			0.73635	0.81891	NaN	1	0	Median	42802000	22101000	20701000	8331	777	7843	16450	40232;40233;40234;40235;40236;40237	40236		6	9606
LFIYNPTTGEFLGR	0	1	Unmodified	1626.8406	0.84059282	889	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	14	0														1			20.868	20.868	2	4.546E-05	16700	DP690-14	125.72	125.72			0.80481	0.9736	NaN	1	0	Median	50049000	28022000	22027000	8332	889	7844	16451	40238;40239	40238		2	9606
LFKPGQEAVK	2	0	Unmodified	1115.6339	0.63389451	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	1	5	0					1												10.775	10.775	2	0.048028	3277	DP690-5	80.219	37.35			1.3818	1.3481	NaN	1	0	Median	11975000	4951600	7023800	8333	1675	7845	16452	40240	40240		1	9606
LFKPPQPPAR	1	1	Unmodified	1149.6659	0.66586334	155	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	1	14	0														1			12.406	12.406	3	0.0073334	5267	DP690-14	88.177	60.263			NaN	NaN	NaN	0	0	Median	0	0	0	8334	155	7846	16453	40241	40241		1	9606
LFLDFLEEFQSSDGEIK	1	0	Unmodified	2015.9728	0.97278878	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	11	0											1						25.102	25.102	2	3.1025E-09	22993	DP690-11	185.57	156.78			0.83225	0.98488	NaN	1	0	Median	3078100	1522600	1555500	8335	1280	7847	16454	40242;40243	40242		2	9606
LFLFHTSLPIAEAPGK	1	0	Unmodified	1739.961	0.9610423	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	11	0											1						19.452	19.452	3	0.00014177	15820	DP690-11	108.06	84.582			0.86833	0.96214	NaN	1	0	Median	269390000	149580000	119810000	8336	883	7848	16455	40244;40245;40246;40247;40248;40249;40250	40247		7	9606
LFLLQQPLAPSGLTLK	1	0	Unmodified	1738.0393	0.039292625	1478	Q6NTF9	RHBDD2	Rhomboid domain-containing protein 2	yes	yes	0	0	0	12	2										1				1			21.837	21.837	2	5.1593E-07	17960	DP690-14	158.06	134.68			0.51775	0.62408	45.279	2	0	Median	47899000	29645000	18255000	8337	1478	7849	16456;16457	40251;40252;40253;40254	40254		4	9606
LFLNETQTQEITEDIPVK	1	0	Unmodified	2117.0892	0.089215523	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	5.33	3.3			2							1							20.253	20.253	2	1.2245E-63	17022	DP690-10	271.04	217.49			1.1798	1.2366	NaN	1	0	Median	23662000	1942900	21719000	8338	721	7850	16458;16459;16460	40255;40256;40257;40258	40255		4	9606
LFLQFVTGSPR	0	1	Unmodified	1263.6976	0.69755739	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	2	0		1															20.069	20.069	2	0.00017788	13609	DP690-2	123.86	90.598			0.95902	0.98069	NaN	1	0	Median	2312300	1131300	1181000	8339	1282	7851	16461	40259;40260	40260		2	9606
LFLSMDPVHGDISR	0	1	Oxidation (M)	1601.7872	0.78717704	2217	Q9NU22	MDN1	Midasin	yes	yes	0	1	0	9	0									1								15.854	15.854	3	0.00042373	9704	DP690-9	100.55	87.226			0.88645	1.1082	NaN	1	0	Median	10104000	3359300	6744800	8340	2217	7852	16462	40261;40262	40261	2698	2	9606
LFLVQLQEK	1	0	Unmodified	1116.6543	0.6542956	190	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	15	0															1		18.423	18.423	2	0.0066504	13231	DP690-15	93.143	60.303			0.85848	1.0126	NaN	1	0	Median	18763000	9846000	8916900	8341	190	7853	16463	40263;40264	40264		2	9606
LFNDDNTIPFIIR	0	1	Unmodified	1576.8249	0.82494275	1658	Q8N5C6	SRBD1	S1 RNA-binding domain-containing protein 1	yes	yes	0	0	0	11	0											1						21.716	21.716	2	0.00019207	18931	DP690-11	156.83	98.393			0.81008	0.97186	NaN	1	0	Median	27259000	15762000	11497000	8342	1658	7854	16464	40265;40266;40267;40268	40265		4	9606
LFNDSSPVVLEESWDALNAITK	1	0	Unmodified	2447.222	0.22202061	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							25.01	25.01	2	0.0026472	23110	DP690-10	110.57	76.785			NaN	NaN	NaN	0	0	Median	0	0	0	8343	1782	7855	16465	40269	40269		1	9606
LFNEHIEALTK	1	0	Unmodified	1313.698	0.69795133	113	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	10	0										1							15.321	15.321	3	7.4643E-05	10058	DP690-10	122.55	67.763			0.84833	1.0482	NaN	1	0	Median	76865000	40850000	36015000	8344	113	7856	16466	40270;40271;40272	40271		3	9606
LFNLSKEDDVR	1	1	Unmodified	1334.683	0.68302954	989	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	1	15	0															1		14.524	14.524	3	0.00038	8105	DP690-15	98.754	63.259			1.0278	1.1344	NaN	1	0	Median	118630000	54841000	63786000	8345	989	7857	16467	40273;40274	40274		2	9606
LFPGFEIETVK	1	0	Unmodified	1278.686	0.68598966	418	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	4	0				1													19.886	19.886	2	0.0012617	14496	DP690-4	104.42	50.649			2.4437	2.6743	NaN	1	0	Median	12453000	2975600	9477100	8346	418	7858	16468	40275;40276;40277	40275		3	9606
LFPLNQQDVPDKFK	2	0	Unmodified	1687.8934	0.89335667	1265	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	1	14	0														1			17.026	17.026	3	0.00028665	11715	DP690-14	104.81	59.083			0.91424	1.0255	NaN	1	0	Median	39117000	20004000	19113000	8347	1265	7859	16469	40278;40279;40280;40281	40280		4	9606
LFPLYVLALLK	1	0	Unmodified	1288.8159	0.81588162	328	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	10.5	0.5										1	1						25.397	25.397	2	0.009372	23369	DP690-11	79.713	66.335			0.86467	1.0264	4.5955	2	0	Median	6382700	3270100	3112600	8348	328	7860	16470;16471	40282;40283;40284;40285	40284		4	9606
LFQECCPHSTDR	0	1	Unmodified	1548.6449	0.64494625	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	10.5	4.01				3								3	3	2			11.249	11.249	2;3	4.1396E-10	3729	DP690-12	202.31	165.62			0.8321	0.96815	8.7443	8	0	Median	3131399999.9999995	1801899999.9999998	1329500000	8349	959	7861	16472;16473;16474;16475;16476;16477;16478;16479;16480;16481;16482	40286;40287;40288;40289;40290;40291;40292;40293;40294;40295;40296;40297;40298;40299;40300;40301;40302;40303;40304;40305;40306;40307;40308;40309;40310;40311;40312;40313;40314;40315;40316;40317;40318;40319;40320;40321;40322;40323;40324;40325;40326	40295		41	9606
LFQLQTLGLK	1	0	Unmodified	1159.6965	0.69649476	1893	Q96LI5;Q9ULM6	CNOT6L;CNOT6	CCR4-NOT transcription complex subunit 6-like;CCR4-NOT transcription complex subunit 6	yes	no	0	0	0	12	0												1					19.79	19.79	2	0.00011445	15619	DP690-12	141.52	105.9			0.79612	0.96604	NaN	1	0	Median	12216000	7389900	4826200	8350	1893	7862	16483	40327;40328	40327		2	9606
LFQSDTNAMLGK	1	0	Oxidation (M)	1339.6442	0.6442012	333	O95619	YEATS4	YEATS domain-containing protein 4	yes	yes	0	1	0	15	0															1		13.961	13.961	2	0.00075335	7305	DP690-15	113.44	113.44			0.79679	0.92273	NaN	1	0	Median	47563000	27850000	19713000	8351	333	7863	16484	40329;40330;40331;40332	40329	346	4	9606
LFQSNDPTLRR	0	2	Unmodified	1345.7102	0.71024735	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	1	3	0			1														12.652	12.652	3	0.061772	5465	DP690-3	60.518	24.185			NaN	NaN	NaN	0	0	Median	13462000	0	13462000	8352	2515	7864	16485	40333	40333		1	9606
LFSGATMASSR	0	1	Oxidation (M)	1142.539	0.53900784	2326	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	1	0	15	0															1		11.737	11.737	2	0.0040313	4330	DP690-15	94.309	46.136			0.80577	0.87733	NaN	1	0	Median	146680000	78302000	68376000	8353	2326	7865	16486	40334;40335;40336;40337	40335	2776	4	9606
LFTAESLIGLK	1	0	Unmodified	1190.6911	0.69107503	775	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	4	0				1													20.469	20.469	2	0.0025134	15262	DP690-4	93.598	65.773			4.3382	4.6726	NaN	1	0	Median	6472100	1414600	5057500	8354	775	7866	16487	40338;40339;40340;40341	40340		4	9606
LFTIHQIDACTNNLPK	1	0	Unmodified	1883.9564	0.95636763	2156	Q9HAU4	SMURF2	E3 ubiquitin-protein ligase SMURF2	yes	yes	0	0	0	11	0											1						17.185	17.185	3	0.0049441	12422	DP690-11	82.837	50.535			NaN	NaN	NaN	0	0	Median	60691000	60691000	0	8355	2156	7867	16488	40342	40342		1	9606
LFTLTALR	0	1	Unmodified	933.56475	0.56475231	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	7	4			1								1						18.745	18.745	2	0.047688	14847	DP690-11	134.06	98.176			0.89458	1.0556	9.1175	2	0	Median	108070000	59076000	48992000	8356	770	7868	16489;16490	40343;40344	40343		0	9606
LFTNFSGADLLK	1	0	Unmodified	1324.7027	0.70270235	1160	Q12800	TFCP2	Alpha-globin transcription factor CP2	yes	yes	0	0	0	8	4				1								1					20.103	20.103	2	5.4524E-05	15994	DP690-12	175.93	120.4			1.0063	1.1212	7.4245	2	0	Median	123110000	66687000	56424000	8357	1160	7869	16491;16492	40345;40346;40347;40348;40349;40350;40351;40352;40353;40354	40346		10	9606
LFTTTEQDEQGSK	1	0	Unmodified	1482.6838	0.6838174	1281	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	9	0									1								12.56	12.56	2	1.2859E-10	5282	DP690-9	229.53	186.09			0.74742	0.95234	NaN	1	0	Median	8479100	3830300	4648800	8358	1281	7870	16493	40355;40356;40357;40358;40359	40358		5	9606
LFVEALGQIGPAPPLK	1	0	Unmodified	1648.9552	0.95522864	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															20.633	20.633	2	4.4679E-07	14266	DP690-2	162.49	162.49			0.9509	0.95427	NaN	1	0	Median	5662600	2779300	2883300	8359	602	7871	16494	40360;40361;40362;40363	40361		4	9606
LFVGGIKEDTEEHHLR	1	1	Unmodified	1878.9588	0.95881047	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	14	0														3			12.896	12.896	4;5	4.9024E-08	5833	DP690-14	173.06	0			0.8404	0.86725	12.882	3	0	Plateau	807710000	453540000	354160000	8360	563	7872	16495;16496;16497	40364;40365;40366;40367;40368;40369;40370	40365		6	9606
LFVGGLDWSTTQETLR	0	1	Unmodified	1821.9261	0.92611336	1845	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	0	0	13	0													1				20.815	20.815	2	0.040655	16520	DP690-13	115.92	115.92			1.2693	1.5507	NaN	1	0	Median	11883000	5601300	6282100	8361	1845	7873	16498	40371	40371		0	9606
LFVGNLPADITEDEFKR	1	1	Unmodified	1963.0051	0.005091963	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	11	0											1						19.417	19.417	3	1.1048E-05	15776	DP690-11	125.33	86.753			0.741	0.81184	NaN	1	0	Median	253290000	141400000	111890000	8362	566	7874	16499	40372;40373	40372		2	9606
LFVGNLPPDITEEEMR	0	1	Unmodified	1858.9135	0.91349976	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	12	0												1					20.119	20.119	2	0.0025427	16071	DP690-12	123.84	68.436			NaN	NaN	NaN	0	0	Median	2684200	0	2684200	8363	1322	7875	16500	40374;40375	40375		2	9606
LFVGNLPTDITEEDFKR	1	1	Unmodified	1993.0157	0.015656649	1761	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	1	12	0												1					19.114	19.114	3	0.049875	14583	DP690-12	69.485	51.382			0.81015	1.0052	NaN	1	0	Median	11930000	6829700	5100600	8364	1761	7876	16501	40376	40376		0	9606
LFVLLPEQSPVSYSK	1	0	Unmodified	1705.9291	0.92907347	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	3	0			1														20.322	20.322	2	0.0060489	15532	DP690-3	110.08	54.651			NaN	NaN	NaN	0	0	Median	7884600	0	7884600	8365	1887	7877	16502	40377;40378	40377		2	9606
LFVLLQTSK	1	0	Unmodified	1047.6328	0.63283187	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	3	0			1														18.356	18.356	2	0.041071	13045	DP690-3	89.698	52.14			NaN	NaN	NaN	0	0	Median	8112700	0	8112700	8366	1887	7878	16503	40379	40379		1	9606
LFVSDGVPGCLPVLAAAGR	0	1	Unmodified	1898.0084	0.0084032019	905	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														21.174	21.174	2	0.03229	16545	DP690-3	66.023	57.51			0.90961	0.99861	NaN	1	0	Median	3810200	1702700	2107500	8367	905	7879	16504	40380	40380		1	9606
LFVTNDAATILR	0	1	Unmodified	1332.7402	0.74015049	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	8	4				1								1					18.708	18.708	2	0.00015834	13136	DP690-4	169.41	110.25			1.4402	1.6646	32.997	2	0	Median	67533000	26773000	40760000	8368	826	7880	16505;16506	40381;40382;40383;40384;40385;40386	40385		6	9606
LFVWEILHSTIR	0	1	Unmodified	1512.8453	0.84528426	1143	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	11	0											1						21.355	21.355	3	0.006625	18488	DP690-11	93.839	55.602			NaN	NaN	NaN	0	0	Median	6382800	0	6382800	8369	1143	7881	16507	40387	40387		1	9606
LFYADHPFIFLVR	0	1	Unmodified	1636.8766	0.87658439	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	10.3	3.77					2								4				20.97	20.97	2;3	2.0053E-05	15536	DP690-5	132.03	101.03			0.87726	0.95136	14.192	3	0	Plateau	343310000	162010000	181300000	8370	819	7882	16508;16509;16510;16511;16512;16513	40388;40389;40390;40391;40392;40393;40394;40395;40396;40397;40398;40399;40400;40401;40402	40400		15	9606
LFYLALPPTVYEAVTK	1	0	Unmodified	1824.0073	0.0073237944	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	7.33	3.4				1		1						1					23.124	23.124	2	0.0013751	17976	DP690-4	96.604	96.604			0.79684	0.86807	10.985	3	0	Median	15170000	8066600	7103400	8371	469	7883	16514;16515;16516	40403;40404;40405;40406;40407;40408;40409;40410;40411	40408		9	9606
LGAPLSGLQGLPECTR	0	1	Unmodified	1667.8665	0.86648999	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	0	14	0														1			18.266	18.266	2	2.0971E-12	13295	DP690-14	219.74	187.41			0.7864	0.91716	NaN	1	0	Median	169150000	90207000	78948000	8372	820	7884	16517	40412;40413;40414;40415	40414		4	9606
LGAPQTHLGLK	1	0	Unmodified	1133.6557	0.65569258	1830	Q96C19;Q9BUP0	EFHD2;EFHD1	EF-hand domain-containing protein D2;EF-hand domain-containing protein D1	yes	no	0	0	0	7	0							1										12.798	12.798	3	0.00017783	5593	DP690-7	112.85	112.85			0.74272	0.80662	NaN	1	0	Median	8133500	4900600	3232900	8373	1830	7885	16518	40416;40417;40418;40419;40420	40418		5	9606
LGAQLADLHLDNK	1	0	Unmodified	1406.7518	0.75177781	2152	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	0	6	0						2											15.978	15.978	2;3	9.4659E-05	9349	DP690-6	172.21	148.84			0.771	0.85799	1.5262	2	0	Median	103620000	58642000	44977000	8374	2152	7886	16519;16520	40421;40422;40423;40424;40425;40426	40426		6	9606
LGAQLADLHLDNKK	2	0	Unmodified	1534.8467	0.84674083	2152	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	1	6	0						2											14.222	14.222	2;3	1.3482E-05	7126	DP690-6	163.51	113.04			0.8047	0.83187	NaN	1	0	Median	264310000	151520000	112790000	8375	2152	7887	16521;16522	40427;40428;40429;40430;40431	40430		5	9606
LGASLAFNNIYR	0	1	Unmodified	1337.7092	0.70918471	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.75	0.433									1	3							18.174	18.174	2	2.2158E-09	12598	DP690-9	257.96	207.92			0.83441	0.92519	NaN	1	0	Median	142250000	76926000	65325000	8376	1046	7888	16523;16524;16525;16526	40432;40433;40434;40435;40436;40437;40438;40439	40437		8	9606
LGAVDESLSEETQK	1	0	Unmodified	1504.7257	0.72568222	1870	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	4	0				1													14.456	14.456	2	0.00022647	7944	DP690-4	115.91	87.338			1.2381	1.3539	NaN	1	0	Median	17538000	8723500	8814600	8377	1870	7889	16527	40440;40441;40442;40443	40443		4	9606
LGAVFNQVAFPLQYTPR	0	1	Unmodified	1920.0258	0.025767826	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10	0.816									1	1	1						21.277	21.277	2	2.0295E-09	18319	DP690-11	189.24	167.85			0.67142	0.80527	3.1579	3	0	Plateau	99432000	56916000	42516000	8378	1329	7890	16528;16529;16530	40444;40445;40446;40447;40448;40449;40450	40446		7	9606
LGCDLDMFLDLDETR	0	1	Oxidation (M)	1827.8019	0.8019004	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	1	0	12	0												1					21.756	21.756	2	0.0031432	18045	DP690-12	121.04	88.787			NaN	NaN	NaN	0	0	Median	2904500	2904500	0	8379	2240	7891	16531	40451;40452	40451	2710	2	9606
LGCFNLTIK	1	0	Unmodified	1064.5689	0.56885141	1222	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	12	0												1					17.708	17.708	2	0.01058	12764	DP690-12	112.41	62.969			NaN	NaN	NaN	0	0	Median	24055000	24055000	0	8380	1222	7892	16532	40453;40454	40453		2	9606
LGCFNLTVK	1	0	Unmodified	1050.5532	0.55320134	1788	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	12	0												1					16.782	16.782	2	0.00082286	11485	DP690-12	131.03	84.037			1.0015	1.185	NaN	1	0	Median	80722000	39587000	41135000	8381	1788	7893	16533	40455;40456	40455		2	9606
LGDAILSVNGTDLR	0	1	Unmodified	1442.7729	0.77290718	1208	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	12	0												1					18.247	18.247	2	0.0043678	13559	DP690-12	92.943	61.309			0.99694	1.1956	NaN	1	0	Median	21901000	11026000	10875000	8382	1208	7894	16534	40457;40458	40457		2	9606
LGDDIDLIVR	0	1	Unmodified	1127.6186	0.61863837	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	8.33	3.3				1					1			1					18.729	18.729	2	4.4165E-05	14097	DP690-12	172.25	140.29			0.98878	1.146	5.8924	2	0	Median	139450000	69512000	69942000	8383	154	7895	16535;16536;16537	40459;40460;40461;40462;40463;40464;40465;40466;40467	40460		9	9606
LGDLYEEEMR	0	1	Oxidation (M)	1269.5547	0.55471749	424	P08670	VIM	Vimentin	yes	yes	0	1	0	10.8	3.43				1								2	2				15.115	15.115	2	0.00073484	8138	DP690-12	120.31	104.3			0.84896	0.93332	15.444	5	0	Median	1249100000	669140000	579950000	8384	424	7896	16538;16539;16540;16541;16542	40468;40469;40470;40471;40472;40473;40474;40475;40476;40477;40478;40479;40480;40481;40482;40483	40470	483	16	9606
LGDLYEEEMR	0	1	Unmodified	1253.5598	0.55980286	424	P08670	VIM	Vimentin	yes	yes	0	0	0	12.5	0.5												1	1				16.152	16.152	2	2.2426E-05	10603	DP690-12	177.7	143.51			0.87995	0.96723	4.6856	2	0	Median	808220000	422900000	385320000	8385	424	7896	16543;16544	40484;40485;40486;40487;40488;40489;40490;40491	40486		8	9606
LGDVISIQPCPDVK	1	0	Unmodified	1539.7967	0.79667909	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	3	0			1														17.247	17.247	2	0.002979	11697	DP690-3	88.338	50.621			1.3219	1.4061	NaN	1	0	Median	11955000	5149700	6805100	8386	893	7897	16545	40492	40492		1	9606
LGEDLNKWQALLVQIR	1	1	Unmodified	1895.0629	0.062881613	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								21.546	21.546	3	0.00035878	16660	DP690-9	96.707	69.978			0.96949	1.1244	NaN	1	0	Median	4450200	2300400	2149800	8387	1264	7898	16546	40493;40494;40495;40496	40493		4	9606
LGEEVNGEATESQQKPR	1	1	Unmodified	1870.9021	0.90208345	2232	Q9NVH0	EXD2	Exonuclease 3'-5' domain-containing protein 2	yes	yes	0	0	1	12	0												1					10.727	10.727	3	0.0040097	3085	DP690-12	70.41	47.556			0.966	1.2182	NaN	1	0	Median	16942000	9213900	7727600	8388	2232	7899	16547	40497	40497		1	9606
LGEHNIDVLEGNEQFINAAK	1	0	Unmodified	2210.0968	0.096760517	28	CON__P00761			yes	yes	0	0	0	9.29	3.73					2		1	1				1	1		1		17.872	17.872	2;3	1.711E-64	11659	DP690-5	298.7	222.54		+	NaN	NaN	NaN	0	0	Median	637000000	637000000	0	8389	28	7900	16548;16549;16550;16551;16552;16553;16554	40498;40499;40500;40501;40502;40503;40504;40505;40506;40507;40508;40509;40510;40511	40504		14	
LGEINVIGEPFLNVNCEHIK	1	0	Unmodified	2294.1729	0.17290235	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	11	0											1						19.687	19.687	3	0.0018219	16215	DP690-11	71.309	71.309			0.6354	0.77052	NaN	1	0	Median	72867000	39968000	32899000	8390	651	7901	16555	40512	40512		1	9606
LGELILTSESSR	0	1	Unmodified	1303.6983	0.69834526	1261	Q14197	ICT1	Peptidyl-tRNA hydrolase ICT1, mitochondrial	yes	yes	0	0	0	15	0															1		16.962	16.962	2	0.00027561	11388	DP690-15	119.34	90.249			0.90031	1.0449	NaN	1	0	Median	20397000	10216000	10181000	8391	1261	7902	16556	40513;40514;40515;40516	40514		4	9606
LGELLFPSSLAGETLGSFSGLR	0	1	Unmodified	2250.1896	0.18959827	673	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	10	0										1							24.531	24.531	2	0.0049921	22557	DP690-10	102.65	65.286			NaN	NaN	NaN	0	0	Median	0	0	0	8392	673	7903	16557	40517	40517		1	9606
LGELPEINGK	1	0	Unmodified	1068.5815	0.58152458	1160	Q12800	TFCP2	Alpha-globin transcription factor CP2	yes	yes	0	0	0	12	0												1					15.808	15.808	2	0.0084285	10164	DP690-12	85.862	29.604			0.93467	1.1233	NaN	1	0	Median	24882000	13068000	11814000	8393	1160	7904	16558	40518;40519	40519		2	9606
LGEPDYIPSQQDILLAR	0	1	Unmodified	1927.0051	0.005091963	1273	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	14	0														1			19.79	19.79	2	0.0008198	15357	DP690-14	95.183	72.463			0.46712	0.56892	NaN	1	0	Median	18826000	12924000	5902000	8394	1273	7905	16559	40520;40521	40521		2	9606
LGETDEEKLFVETGK	2	0	Unmodified	1693.841	0.84104633	2470	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	1	15	0															1		16.108	16.108	3	0.0014303	10274	DP690-15	85.006	65.736			0.94976	1.087	NaN	1	0	Median	17926000	9815800	8109900	8395	2470	7906	16560	40522	40522		1	9606
LGEYEDVSR	0	1	Unmodified	1066.4931	0.49310351	1933	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	7	0							1										12.795	12.795	2	0.016746	5600	DP690-7	82.75	49.938			1.1276	1.2963	NaN	1	0	Median	17476000	7106100	10370000	8396	1933	7907	16561	40523;40524	40523		2	9606
LGEYGFQNALIVR	0	1	Unmodified	1478.7882	0.78816332	37	CON__P02769			yes	yes	0	0	0	2.67	1.25	1		1	1													19.233	19.233	2	1.9416E-11	14159	DP690-3	187.5	133.91		+	NaN	NaN	NaN	0	0	Median	47725000	47725000	0	8397	37	7908	16562;16563;16564	40525;40526;40527;40528;40529;40530	40528		6	
LGFAGLVQEISFGTTK	1	0	Unmodified	1666.893	0.89302232	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	6	3.46				3								1					22.885	22.885	2	2.0569E-07	19369	DP690-12	171.62	171.62			1.5001	1.5993	26.262	3	0	Median	9078900	4444300	4634600	8398	779	7909	16565;16566;16567;16568	40531;40532;40533;40534;40535;40536;40537	40531		7	9606
LGFFTTYFLPLANTLK	1	0	Unmodified	1845.0077	0.0076581454	1420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	10	0										1							25.126	25.126	2	0.00075316	23245	DP690-10	100.04	77.256			0.89207	1.0812	NaN	1	0	Median	6373500	3365700	3007800	8399	1420	7910	16569	40538;40539;40540	40540		3	9606
LGFHLPLEVAYQR	0	1	Unmodified	1541.8354	0.83544786	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8	3.54		1							1	1	1						18.943	18.943	3	1.5248E-05	15139	DP690-11	110.98	95.391			0.73023	0.83628	27.355	4	0	Median	603780000	334210000	269570000	8400	1319	7911	16570;16571;16572;16573	40541;40542;40543;40544;40545;40546;40547;40548;40549;40550;40551;40552;40553;40554;40555	40548		15	9606
LGGAVLSFSEATSSVQK	1	0	Unmodified	1679.873	0.87301516	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															17.959	17.959	2	2.8523E-07	11214	DP690-2	146.5	107.32			1.4943	1.5047	NaN	1	0	Median	10367000	4640800	5726300	8401	602	7912	16574	40556;40557;40558;40559;40560	40556		5	9606
LGGIAYFLSR	0	1	Unmodified	1095.6077	0.60767975	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	11	0											3						20.101	20.101	2	0.0034753	16678	DP690-11	129.42	82.34			NaN	NaN	NaN	0	0	Median	27327000	0	27327000	8402	2105	7913	16575;16576;16577	40561;40562;40563;40564	40561		4	9606
LGGIGQFLAK	1	0	Unmodified	1002.5862	0.58621603	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	9.5	0.5									1	1							17.933	17.933	2	0.0016701	13746	DP690-10	104.37	51.729			0.91487	1.135	6.3074	2	0	Median	166890000	85890000	81002000	8403	1137	7914	16578;16579	40565;40566;40567;40568	40565		4	9606
LGGIPVGVVAVETR	0	1	Unmodified	1365.798	0.79799972	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															18.212	18.212	2	0.00055393	11515	DP690-2	107.03	60.207			1.1657	1.2205	NaN	1	0	Median	5951100	2618400	3332700	8404	1179	7915	16580	40569;40570;40571;40572	40571		4	9606
LGGLTQAPGNPVLAVQINQDK	1	0	Unmodified	2132.159	0.15896684	592	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	12	0												3					18.542	18.542	2	6.7631E-10	13931	DP690-12	155.56	113.47			0.63147	0.76274	NaN	1	0	Median	15015000	10053000	4961700	8405	592	7916	16581;16582;16583	40573;40574;40575;40576	40573		4	9606
LGGSAVISLEGKPL	1	0	Unmodified	1339.7711	0.77111627	572	P23528	CFL1	Cofilin-1	yes	yes	0	0	1	12	4								1								1	18.204	18.204	2	1.6357E-05	11742	DP690-8	181.4	160.56			0.80261	0.89322	6.8455	2	0	Median	75193000	41403000	33790000	8406	572	7917	16584;16585	40577;40578;40579;40580;40581;40582;40583;40584;40585;40586;40587	40586		11	9606
LGGSPFGPAGTGK	1	0	Unmodified	1144.5877	0.58767259	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								14.17	14.17	2	6.0946E-05	7343	DP690-9	173.24	130.37			0.68519	0.83436	NaN	1	0	Median	32052000	18108000	13944000	8407	1264	7918	16586	40588;40589;40590;40591	40591		4	9606
LGGTCVNVGCVPK	1	0	Unmodified	1359.6639	0.66389078	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	4	0				1													14.257	14.257	2	4.6765E-05	7545	DP690-4	181.87	139.59			0.76065	0.80125	NaN	1	0	Median	96465000	52122000	44343000	8408	353	7919	16587	40592;40593;40594;40595	40593		4	9606
LGGTIDDCELVEGLVLTQK	1	0	Unmodified	2059.0507	0.050721527	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	4	0				1													21.641	21.641	2	0.0014943	16569	DP690-4	113.07	74.891			NaN	NaN	NaN	0	0	Median	961430	0	961430	8409	827	7920	16588	40596	40596		1	9606
LGHAEQKDEMVPR	1	1	Unmodified	1508.7406	0.7405612	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	1	12	0												2					10.404	10.404	3;4	0.0015318	2647	DP690-12	95.428	72.647			0.53962	0.67044	NaN	1	0	Median	22435000	19218000	3217500	8410	2298	7921	16589;16590	40597;40598;40599	40599		3	9606
LGIKPESVQPHRPTTNPNTSK	2	1	Unmodified	2300.2237	0.22369236	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	2	14.4	2.26									1						4	2	10.689	10.689	3;4;5	7.6613E-07	3091	DP690-15	138.05	110.34			0.52964	0.5851	24.573	7	0	Median	9872100000	6332899999.999999	3539099999.9999995	8411	1354	7922	16591;16592;16593;16594;16595;16596;16597	40600;40601;40602;40603;40604;40605;40606;40607;40608;40609;40610;40611;40612;40613;40614;40615;40616;40617;40618	40609		19	9606
LGIQAEPLYR	0	1	Unmodified	1158.6397	0.63970816	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								16.185	16.185	2	0.0025144	10129	DP690-9	133.86	71.316			NaN	NaN	NaN	0	0	Median	9506300	9506300	0	8412	1048	7923	16598	40619;40620	40619		2	9606
LGIQTDDKGHIIVDEFQNTNVK	2	0	Unmodified	2483.2656	0.26561676	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	1	4.5	0.5				1	1												16.869	16.869	4	0.0003619	10997	DP690-4	87.228	69.877			0.71526	0.72069	20.769	2	0	Median	77949000	46814000	31136000	8413	353	7924	16599;16600	40621;40622;40623;40624;40625;40626	40622		6	9606
LGISFQPVFR	0	1	Unmodified	1162.6499	0.64987892	823	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	2	0		1															19.871	19.871	2	0.086518	13338	DP690-2	56.434	27.737			0.77594	0.79335	NaN	1	0	Median	1251000	699540	551410	8414	823	7925	16601	40627	40627		1	9606
LGLAPQIQDLYGK	1	0	Unmodified	1414.782	0.78201531	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	6	4		1								1							19.106	19.106	2	0.00024298	12530	DP690-2	117.02	71.114			0.85692	0.94914	38.301	2	0	Median	43046000	25178000	17868000	8415	766	7926	16602;16603	40628;40629;40630	40629		3	9606
LGLDPTQEDCVATHR	0	1	Unmodified	1710.7995	0.79953264	861	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	11	0											1						14.252	14.252	3	0.027313	8333	DP690-11	87.824	50.811			NaN	NaN	NaN	0	0	Median	32938000	32938000	0	8416	861	7927	16604	40631	40631		1	9606
LGLEALAANHQQLFTDGR	0	1	Unmodified	1953.0068	0.0068232975	2452	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	13	0													1				18.346	18.346	3	0.031821	13314	DP690-13	74.732	74.732			1.0507	1.2941	NaN	1	0	Median	17905000	6250600	11655000	8417	2452	7928	16605	40632	40632		0	9606
LGLEFFDQPAVPLAR	0	1	Unmodified	1671.8984	0.89844205	614	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	14	0														2			21.838	21.838	2	8.3598E-15	17979	DP690-14	216.91	169.07			0.61899	0.75061	NaN	1	0	Median	27983000	17233000	10750000	8418	614	7929	16606;16607	40633;40634	40634		2	9606
LGLGEGAEEK	1	0	Unmodified	1001.5029	0.50293991	531	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	13	0													3				12.287	12.287	2	0.016854	4974	DP690-13	102.62	30.744			NaN	NaN	NaN	0	0	Median	40414000	0	40414000	8419	531	7930	16608;16609;16610	40635;40636;40637;40638	40635		4	9606
LGLHQQGSEPSYLDR	0	1	Unmodified	1698.8325	0.83254733	2014	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	13	0													1				13.74	13.74	3	0.0050728	6971	DP690-13	70.134	46.178			0.7771	0.9154	NaN	1	0	Median	128490000	77432000	51062000	8420	2014	7931	16611	40639	40639		1	9606
LGLIEWLENTVTLK	1	0	Unmodified	1627.9185	0.91850879	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.33	0.471									2	1							26.367	26.367	2	3.4209E-05	21795	DP690-9	171.92	147.23			0.84299	1.0752	5.6115	3	0	Median	16971000	9089100	7881600	8421	1046	7932	16612;16613;16614	40640;40641;40642;40643;40644;40645;40646;40647;40648	40646		9	9606
LGLLEALLK	1	0	Unmodified	968.62702	0.62701821	1706	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	10	0										1							22.38	22.38	2	0.0024426	19898	DP690-10	110.12	48.012			0.85361	1.0401	NaN	1	0	Median	21624000	10812000	10812000	8422	1706	7933	16615	40649;40650;40651;40652;40653;40654;40655	40650		7	9606
LGLPGDEVDNK	1	0	Unmodified	1155.5772	0.57716749	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								14.683	14.683	2	0.0070216	8091	DP690-9	109.44	52.718			NaN	NaN	NaN	0	0	Median	28740000	0	28740000	8423	1046	7934	16616	40656;40657	40657		2	9606
LGLPGDEVDNKVK	2	0	Unmodified	1382.7405	0.74054442	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.33	0.471									2	1							13.732	13.732	2;3	0.00069705	6798	DP690-9	94.538	56.57			0.66869	0.73163	10.004	3	0	Plateau	684040000	397890000	286150000	8424	1046	7935	16617;16618;16619	40658;40659;40660;40661;40662;40663;40664;40665;40666;40667	40664		10	9606
LGLPPLTPEQQEALQK	1	0	Unmodified	1760.9672	0.96724989	2348	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	12	0												1					17.978	17.978	2	3.5117E-07	13110	DP690-12	166.11	166.11			0.62724	0.74846	NaN	1	0	Median	69169000	45388000	23780000	8425	2348	7936	16620	40668;40669;40670;40671;40672;40673	40669		6	9606
LGLQDGSTSLLPEQLLSAPK	1	0	Unmodified	2066.1259	0.12593538	1440	Q5T7V8	GORAB	RAB6-interacting golgin	yes	yes	0	0	0	13	0													1				21.678	21.678	2	6.2587E-05	17569	DP690-13	120.92	110.93			0.73084	0.82716	NaN	1	0	Median	7194900	4032700	3162200	8426	1440	7937	16621	40674	40674		1	9606
LGLQYSQGLVSGSNAR	0	1	Unmodified	1648.8533	0.85328277	2350	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	12	0												1					16.401	16.401	2	0.002031	10991	DP690-12	127.56	65.743			NaN	NaN	NaN	0	0	Median	24637000	24637000	0	8427	2350	7938	16622	40675;40676	40675		2	9606
LGLSESDENCR	0	1	Unmodified	1278.551	0.55102909	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															12.794	12.794	2	0.00010139	5071	DP690-2	126.31	82.871			1.0489	1.0898	NaN	1	0	Median	4688400	2135500	2552800	8428	2418	7939	16623	40677;40678	40678		2	9606
LGLSESDENCRR	0	2	Unmodified	1434.6521	0.65214012	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	1	2	0		1															10.93	10.93	3	0.029154	3116	DP690-2	53.124	15.407			1.0673	1.066	NaN	1	0	Median	10782000	5060600	5721100	8429	2418	7940	16624	40679;40680	40680		2	9606
LGLSPGEPSPVLGTVEAGPPDPDESAVLLEAIGPVHQNR	0	1	Unmodified	3914.0062	0.0061611806	1480	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	11	0											1						22.249	22.249	3	5.6959999999999994E-21	19553	DP690-11	154.41	154.41			0.46105	0.55706	NaN	1	0	Median	22315000	14598000	7717000	8430	1480	7941	16625	40681;40682;40683;40684;40685	40681		5	9606
LGLSYTPLAEVGLNALEEWSIYIDR	0	1	Unmodified	2821.4538	0.45381146	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								28.822	28.822	2	2.3068E-15	23698	DP690-9	168.05	149.68			0.6221	0.70481	NaN	1	0	Median	675270	400330	274940	8431	1046	7942	16626	40686;40687;40688;40689;40690;40691	40687		6	9606
LGLTMQYPEGYLEALANR	0	1	Unmodified	2038.0194	0.019361819	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	11	0											1						22.255	22.255	2	2.0265000000000002E-29	19580	DP690-11	231.74	176.96			0.62061	0.75259	NaN	1	0	Median	20486000	12096000	8389700	8432	1932	7943	16627	40692;40693;40694;40695;40696	40693		5	9606
LGLVGVNLTLDGVK	1	0	Unmodified	1396.829	0.8289655	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	3	0			1														20.663	20.663	2	0.0002459	15967	DP690-3	114.86	114.86			0.96096	1.015	NaN	1	0	Median	8924000	4674700	4249400	8433	873	7944	16628	40697;40698;40699	40697		3	9606
LGMENDDTAVQYAIGR	0	1	Oxidation (M)	1767.8098	0.80976297	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	1	0	13	0													2				16.481	16.481	2	1.8154E-17	10755	DP690-13	225.15	193.39			0.71458	0.84447	NaN	1	0	Median	120840000	68779000	52058000	8434	1114	7945	16629;16630	40700;40701;40702;40703;40704;40705	40702	1727	6	9606
LGMENDDTAVQYAIGR	0	1	Unmodified	1751.8148	0.81484835	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	13	0													1				17.817	17.817	2	3.9596E-26	12590	DP690-13	269.44	215.87			NaN	NaN	NaN	0	0	Median	34141000	34141000	0	8435	1114	7945	16631	40706;40707	40706		2	9606
LGMIDAFDEAK	1	0	Oxidation (M)	1224.5696	0.56963927	818	P50452	SERPINB8	Serpin B8	yes	yes	0	1	0	6	0						1											16.044	16.044	2	0.0015589	9394	DP690-6	107.21	46.769			0.75288	0.85562	NaN	1	0	Median	6909700	4126000	2783700	8436	818	7946	16632	40708;40709	40708	1227	2	9606
LGMLSPEGTCK	1	0	Oxidation (M)	1207.5577	0.55769437	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	2.5	0.5		1	1														12.302	12.302	2	0.00013395	4609	DP690-2	147.2	109.64			0.86426	0.90029	7.5499	2	0	Median	62842000	34610000	28231000	8437	789	7947	16633;16634	40710;40711;40712;40713;40714;40715;40716;40717;40718;40719	40714	1183	10	9606
LGMLSPEGTCK	1	0	Unmodified	1191.5628	0.56277975	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															14.462	14.462	2	0.00068188	7029	DP690-2	109.44	81.557			0.95518	0.96357	NaN	1	0	Median	14211000	6870200	7340700	8438	789	7947	16635	40720;40721;40722;40723	40721		4	9606
LGNNCVFAPADVTSEKDVQTALALAK	2	0	Unmodified	2731.3851	0.38507997	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	1	15	0															1		20.12	20.12	3	0.00083913	15352	DP690-15	65.677	40.096			0.68235	0.77797	NaN	1	0	Median	7048900	3889400	3159500	8439	1953	7948	16636	40724	40724		1	9606
LGNPIVPLNIR	0	1	Unmodified	1204.7292	0.72919187	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7	3.56		1							1	1							18.239	18.239	2	0.00012926	12641	DP690-9	153.04	127.46			0.57026	0.66002	15.761	3	0	Plateau	331320000	159910000	171420000	8440	1046	7949	16637;16638;16639	40725;40726;40727;40728;40729;40730;40731;40732	40731		8	9606
LGNSCEFR	0	1	Unmodified	981.43381	0.43381449	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						11.724	11.724	2	0.03973	4556	DP690-11	127.12	102.12			0.8369	0.91348	NaN	1	0	Median	377760000	208800000	168960000	8441	897	7950	16640	40733	40733		0	9606
LGPASAADTGSEAKPGALAEGAAEPEPQR	1	1	Unmodified	2747.3362	0.33621552	2260	Q9NYB0	TERF2IP	Telomeric repeat-binding factor 2-interacting protein 1	yes	yes	0	0	1	13	0													1				14.283	14.283	3	0.00017537	7785	DP690-13	99.836	62.437			NaN	NaN	NaN	0	0	Median	10897000	10897000	0	8442	2260	7951	16641	40734;40735	40734		2	9606
LGPEGELLIR	0	1	Unmodified	1095.6288	0.62880913	1349	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	12	0												1					17.461	17.461	2	0.00053351	12411	DP690-12	117.81	93.292			0.93315	1.1083	NaN	1	0	Median	57209000	30479000	26730000	8443	1349	7952	16642	40736;40737;40738;40739	40736		4	9606
LGPTEGRPQLK	1	1	Unmodified	1194.6721	0.67207093	145	O15235	MRPS12	28S ribosomal protein S12, mitochondrial	yes	yes	0	0	1	16	0																1	11.03	11.03	3	0.00018851	3627	DP690-16	114.51	65.324			10.632	12.155	NaN	1	0	Median	11779000	1457600	10321000	8444	145	7953	16643	40740;40741;40742;40743	40740		4	9606
LGQALTEVYAK	1	0	Unmodified	1191.6499	0.6499385	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							15.21	15.21	2	0.00010139	9840	DP690-10	126.31	69.397			0.81845	1.0109	NaN	1	0	Median	142100000	75200000	66904000	8445	1071	7954	16644	40744;40745;40746;40747	40746		4	9606
LGQSSMLGEQGAR	0	1	Oxidation (M)	1348.6405	0.6405128	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	1	0	10	0										2							11.174	11.174	2	0.047453	3891	DP690-10	84.658	37.471			NaN	NaN	NaN	0	0	Median	18235000	18235000	0	8446	1234	7955	16645;16646	40748;40749;40750	40748		3	9606
LGSAADFLLDISETDLSSLTASIK	1	0	Unmodified	2466.2741	0.27411576	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							27.643	27.643	2	4.9141E-05	25880	DP690-10	148.57	107.22			NaN	NaN	NaN	0	0	Median	0	0	0	8447	250	7956	16647	40751	40751		1	9606
LGSAPAASPALASPEGPK	1	0	Unmodified	1619.8519	0.85188578	1515	Q6ZUT6	C15orf52	Uncharacterized protein C15orf52	yes	yes	0	0	0	13	0													1				14.189	14.189	2	1.8956E-05	7603	DP690-13	126.32	107.69			0.44621	0.51154	NaN	1	0	Median	11938000	7665700	4272300	8448	1515	7957	16648	40752;40753	40753		2	9606
LGSAVVTR	0	1	Unmodified	801.47085	0.47085192	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						10.777	10.777	2	0.039727	3270	DP690-11	126.28	72.568			1.3771	1.608	NaN	1	0	Median	158130000	65337000	92791000	8449	891	7958	16649	40754	40754		0	9606
LGSFGSITR	0	1	Unmodified	936.50288	0.50288033	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	6	4		1								1							14.799	14.799	2	0.0045213	9319	DP690-10	101.72	71.646			0.88776	1.036	NaN	1	0	Median	302490000	156030000	146460000	8450	1270	7959	16650;16651	40755;40756;40757	40755		3	9606
LGSIFGLGLAYAGSNR	0	1	Unmodified	1594.8467	0.84674083	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	3	0			1														21.235	21.235	2	0.00013481	16655	DP690-3	120.53	81.894			1.6024	1.7829	NaN	1	0	Median	5992600	1970100	4022500	8451	1190	7960	16652	40758;40759;40760	40758		3	9606
LGSLVDEFKELVYPPDYNPEGK	2	0	Unmodified	2508.2424	0.2424217	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	12	0												1					22.527	22.527	3	0.0060531	18996	DP690-12	57.39	44.202			0.66056	0.75526	NaN	1	0	Median	4064800	2205700	1859100	8452	479	7961	16653	40761;40762;40763	40763		3	9606
LGSPDSTSPSSSPTFWNYSR	0	1	Unmodified	2171.976	0.97597668	1926	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	0	0	12	0												2					18.102	18.102	2	0.003441	13291	DP690-12	154.13	106.9			NaN	NaN	NaN	0	0	Median	0	0	0	8453	1926	7962	16654;16655	40764;40765	40764		2	9606
LGSSGLGSASSIQAAVR	0	1	Unmodified	1559.8267	0.82673367	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															15.935	15.935	2	1.4292E-07	8889	DP690-2	166.62	122.67			0.85641	0.89438	NaN	1	0	Median	5248900	2737700	2511200	8454	1555	7963	16656	40766;40767;40768	40768		3	9606
LGSTEVASNVPK	1	0	Unmodified	1200.635	0.63501672	2497	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	12	0												1					12.811	12.811	2	0.00032506	5904	DP690-12	117.71	91.322			0.84092	0.97415	NaN	1	0	Median	111910000	57218000	54693000	8455	2497	7964	16657	40769;40770;40771;40772	40772		4	9606
LGSTVFVANLDYK	1	0	Unmodified	1425.7504	0.75038083	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11	0											1						18.385	18.385	2	0.0014834	14233	DP690-11	97.452	72.987			0.85891	0.97868	NaN	1	0	Median	187460000	106310000	81152000	8456	849	7965	16658	40773;40774	40773		2	9606
LGTDEISPR	0	1	Unmodified	986.50327	0.50327426	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											2						12.984	12.984	2	0.0020068	6329	DP690-11	114.89	67.827			0.38206	0.46021	NaN	1	0	Median	294800000	63622000	231180000	8457	65	7966	16659;16660	40775;40776;40777	40776		3	9606
LGTLSALDILIK	1	0	Unmodified	1255.7751	0.77513901	1576	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	3	0			1														22.149	22.149	2	0.0021238	17725	DP690-3	93.561	47.104			1.1226	1.1725	NaN	1	0	Median	2939700	1501200	1438500	8458	1576	7967	16661	40778	40778		1	9606
LGTNQENQQPNQQPPGK	1	0	Unmodified	1876.9028	0.90275216	310	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	11	0											1						10.476	10.476	2	5.0546E-06	2822	DP690-11	130.69	90.724			0.39402	0.47604	NaN	1	0	Median	55617000	38676000	16942000	8459	310	7968	16662	40779;40780	40779		2	9606
LGTPQQIAIAR	0	1	Unmodified	1166.6772	0.6771563	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	3	0			1														14.567	14.567	2	9.8312E-05	8065	DP690-3	126.41	99.97			0.79424	0.89111	NaN	1	0	Median	34116000	18740000	15376000	8460	1531;1849	7969	16663	40781;40782;40783;40784;40785	40782		5	9606
LGTQEYLQQLESHMK	1	0	Oxidation (M)	1819.8774	0.87744861	1491	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	1	0	10	0										1							16.334	16.334	3	0.037932	11480	DP690-10	52.008	52.008			1.2614	1.5588	NaN	1	0	Median	76045000	33041000	43004000	8461	1491	7970	16664	40786	40786	2177	1	9606
LGVDISATK	1	0	Unmodified	902.5073	0.50729701	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	12	0												1					14.044	14.044	2	0.00018847	7579	DP690-12	166.68	100.88			0.91109	0.98249	NaN	1	0	Median	337770000	173680000	164090000	8462	2210	7971	16665	40787;40788;40789;40790	40787		4	9606
LGVLHPDVITK	1	0	Unmodified	1190.7023	0.70230842	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	8.2	3.6				2					1			2					14.223	14.223	2;3	0.00063079	7510	DP690-4	99.343	61.647			1.0148	1.1747	49.776	5	0	Median	619280000	225940000	393340000	8463	2210	7972	16666;16667;16668;16669;16670	40791;40792;40793;40794;40795;40796;40797;40798;40799;40800;40801;40802;40803;40804	40799		14	9606
LGVNNISGIEEVNMFTNQGTVIHFNNPK	1	0	Oxidation (M)	3101.524	0.52403307	541	P20290	BTF3	Transcription factor BTF3	yes	yes	0	1	0	15	0															1		19.839	19.839	3	0.00028096	15063	DP690-15	92.428	70.758			NaN	NaN	NaN	0	0	Median	1857400	0	1857400	8464	541	7973	16671	40805;40806;40807	40807	689	3	9606
LGVQDLFNSSK	1	0	Unmodified	1206.6245	0.62445203	628	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	6	0						1											19.044	19.044	2	2.8924E-06	12955	DP690-6	198.61	130.6			0.85076	0.97759	NaN	1	0	Median	12834000	6951200	5883100	8465	628	7974	16672	40808;40809;40810;40811	40810		4	9606
LGVTNTIISHYDGR	0	1	Unmodified	1544.7947	0.79470526	752	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	11	0											1						15.826	15.826	3	0.078665	10666	DP690-11	57.328	21.805			NaN	NaN	NaN	0	0	Median	22313000	22313000	0	8466	752	7975	16673	40812	40812		1	9606
LHAIKEQLIQEGLLDR	1	1	Unmodified	1875.0578	0.057796235	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	1	3	0			2														16.119	16.119	3;4	2.0122E-07	10124	DP690-3	159.18	136.17			0.72567	0.80483	3.9822	2	0	Median	65789000	39981000	25809000	8467	2316	7976	16674;16675	40813;40814;40815;40816;40817	40814		5	9606
LHALAGFQQR	0	1	Unmodified	1139.62	0.61997578	1906	Q96P11;Q3KNT7;Q63ZY6	NSUN5;NSUN5P1;NSUN5P2	Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative NOL1/NOP2/Sun domain family member 5B;Putative methyltransferase NSUN5C	yes	no	0	0	0	13	0													3				12.743	12.743	2;3	0.00013765	5582	DP690-13	117.81	59.581			0.93684	1.1448	NaN	1	0	Median	40628000	23772000	16856000	8468	1906	7977	16676;16677;16678	40818;40819;40820;40821;40822;40823;40824	40823		7	9606
LHDETLTYLNQGQSYEIR	0	1	Unmodified	2179.0546	0.054561351	1160	Q12800;Q9NZI7	TFCP2;UBP1	Alpha-globin transcription factor CP2;Upstream-binding protein 1	yes	no	0	0	0	12	0												3					16.814	16.814	2;3	9.947400000000001E-64	11543	DP690-12	286.53	198.82			0.85165	0.94256	NaN	1	0	Median	303440000	165010000	138430000	8469	1160	7978	16679;16680;16681	40825;40826;40827;40828;40829;40830	40830		6	9606
LHDMLGPHMLR	0	1	Unmodified	1318.6638	0.6638312	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	10	0										1							13.779	13.779	3	0.03225	7802	DP690-10	48.188	37.838			0.8831	1.1053	NaN	1	0	Median	38098000	19257000	18841000	8470	1297	7979	16682	40831	40831		1	9606
LHDNLIISDLENTVK	1	0	Unmodified	1722.9152	0.91521432	1466	Q69YQ0	SPECC1L	Cytospin-A	yes	yes	0	0	0	11	0											1						19.231	19.231	3	0.018218	15524	DP690-11	56.339	39.673			1.0152	1.2363	NaN	1	0	Median	35979000	15151000	20828000	8471	1466	7980	16683	40832	40832		1	9606
LHDSISEEGFHYLVFDLVTGGELFEDIVAR	0	1	Unmodified	3406.6721	0.67213709	1223;1224	Q13555;Q13554;Q13557	CAMK2G;CAMK2B;CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit delta	no	no	0	0	0	13	0													1				27.644	27.644	4	3.019E-07	23767	DP690-13	125.39	125.39			0.85761	1.0252	NaN	1	0	Median	6732200	3764300	2967900	8472	1223;1224	7981	16684	40833;40834;40835;40836;40837;40838;40839;40840;40841;40842;40843	40834		11	9606
LHDSSGSQVGTGFK	1	0	Unmodified	1418.679	0.6790068	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.67	0.471									2	4							10.769	10.769	2;3	1.6229E-07	3439	DP690-10	178.95	132.49			0.94265	1.1702	13.762	3	0	Median	288770000	163580000	125190000	8473	808	7982	16685;16686;16687;16688;16689;16690	40844;40845;40846;40847;40848;40849;40850;40851;40852;40853;40854;40855;40856	40848		13	9606
LHDSVVMVTQESDSSFLVK	1	0	Oxidation (M)	2136.0409	0.040885122	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	1	0	5.66	2.18		2	2	2	33	8	3	2	1				2	1			23.513	23.513	2;3	2.4472E-97	11108	DP690-5	311	261.37			67.258	65.873	121.59	9	0	Median	52585000000	749970000	51835000000	8474	2071	7983	16691;16692;16693;16694;16695;16696;16697;16698;16699;16700;16701;16702;16703;16704;16705;16706;16707;16708;16709;16710;16711;16712;16713;16714;16715;16716;16717;16718;16719;16720;16721;16722;16723;16724;16725;16726;16727;16728;16729;16730;16731;16732;16733;16734;16735;16736;16737;16738;16739;16740;16741;16742;16743;16744;16745;16746	40857;40858;40859;40860;40861;40862;40863;40864;40865;40866;40867;40868;40869;40870;40871;40872;40873;40874;40875;40876;40877;40878;40879;40880;40881;40882;40883;40884;40885;40886;40887;40888;40889;40890;40891;40892;40893;40894;40895;40896;40897;40898;40899;40900;40901;40902;40903;40904;40905;40906;40907;40908;40909;40910;40911;40912;40913;40914;40915;40916;40917;40918;40919;40920;40921;40922;40923;40924;40925;40926;40927;40928;40929;40930;40931;40932;40933;40934;40935;40936;40937;40938;40939;40940;40941;40942;40943;40944;40945;40946;40947;40948;40949;40950;40951;40952;40953;40954;40955;40956;40957;40958;40959;40960;40961;40962;40963;40964;40965;40966;40967;40968;40969;40970;40971;40972;40973;40974;40975;40976;40977	40888	2590	121	9606
LHDSVVMVTQESDSSFLVK	1	0	Unmodified	2120.046	0.0459705	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5.54	2.07		2	2		22	8	2	1					2				22.733	22.733	2;3;4	2.0728E-160	11127	DP690-5	361.52	314.09			30.3	30.777	78.413	4	0	Median	28484000000	31470000	28452000000	8475	2071	7983	16747;16748;16749;16750;16751;16752;16753;16754;16755;16756;16757;16758;16759;16760;16761;16762;16763;16764;16765;16766;16767;16768;16769;16770;16771;16772;16773;16774;16775;16776;16777;16778;16779;16780;16781;16782;16783;16784;16785	40978;40979;40980;40981;40982;40983;40984;40985;40986;40987;40988;40989;40990;40991;40992;40993;40994;40995;40996;40997;40998;40999;41000;41001;41002;41003;41004;41005;41006;41007;41008;41009;41010;41011;41012;41013;41014;41015;41016;41017;41018;41019;41020;41021;41022;41023;41024;41025;41026;41027;41028;41029;41030;41031;41032;41033;41034;41035;41036;41037;41038;41039;41040;41041;41042;41043;41044;41045;41046;41047;41048;41049;41050;41051;41052;41053;41054;41055;41056;41057;41058;41059;41060;41061;41062;41063;41064;41065;41066;41067;41068;41069;41070	40999		93	9606
LHDSVVMVTQESDSSFLVKVGFLK	2	0	Oxidation (M)	2680.3782	0.37820368	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	1	1	5.5	0.5					1	1											19.516	19.516	4	1.1126E-08	13731	DP690-5	133.92	99.269			NaN	NaN	NaN	0	0	Median	94569000	0	94569000	8476	2071	7984	16786;16787	41071;41072;41073;41074	41071	2590	4	9606
LHDSVVMVTQESDSSFLVKVGFLK	2	0	Unmodified	2664.3833	0.38328905	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	1	5	0					1												20.029	20.029	4	1.9644E-08	14421	DP690-5	124.94	101.34			NaN	NaN	NaN	0	0	Median	27639000	0	27639000	8477	2071	7984	16788	41075	41075		1	9606
LHETVDATSETHIYQVR	0	1	Unmodified	1997.9807	0.98066813	2304	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	11	0											1						13.488	13.488	4	0.061806	7130	DP690-11	48.391	33.37			0.80888	0.96967	NaN	1	0	Median	58370000	35644000	22726000	8478	2304	7985	16789	41076	41076		0	9606
LHFFMPGFAPLTAR	0	1	Oxidation (M)	1619.8283	0.82825399	1217	Q13509	TUBB3	Tubulin beta-3 chain	yes	yes	0	1	0	13	0													2				18.796	18.796	3	0.00055801	13910	DP690-13	96.059	77.328			2.2495	2.7394	NaN	1	0	Median	44415000	15533000	28882000	8479	1217	7986	16790;16791	41077;41078	41077	1862	2	9606
LHFFMPGFAPLTAR	0	1	Unmodified	1603.8333	0.83333937	1217	Q13509	TUBB3	Tubulin beta-3 chain	yes	yes	0	0	0	9	4					1								1				20.41	20.41	3	0.00025037	14830	DP690-5	110.38	96.966			0.67857	0.7093	NaN	1	0	Median	20807000	17064000	3743100	8480	1217	7986	16792;16793	41079;41080;41081;41082	41081		4	9606
LHFFMPGFAPLTSR	0	1	Oxidation (M)	1635.8232	0.82316861	1034;406;2017;370;2010;1389	P07437;A6NNZ2;P68371;Q9BVA1;Q13885;P04350;Q3ZCM7;Q9BUF5	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB4A;TUBB8;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-6 chain	no	no	0	1	0	10.2	3.86				1	8	1	2						17	2	1		21.997	21.997	2;3	7.1507E-06	14973	DP690-13	127.56	100.83			0.92023	1.0021	18.403	23	0	Median	9015100000	4643300000	4371800000	8481	406;1034;2017;370;1389;2010	7987	16794;16795;16796;16797;16798;16799;16800;16801;16802;16803;16804;16805;16806;16807;16808;16809;16810;16811;16812;16813;16814;16815;16816;16817;16818;16819;16820;16821;16822;16823;16824;16825	41083;41084;41085;41086;41087;41088;41089;41090;41091;41092;41093;41094;41095;41096;41097;41098;41099;41100;41101;41102;41103;41104;41105;41106;41107;41108;41109;41110;41111;41112;41113;41114;41115;41116;41117;41118;41119;41120;41121;41122;41123;41124;41125;41126;41127;41128;41129;41130;41131;41132;41133;41134;41135;41136;41137;41138;41139;41140;41141;41142;41143;41144;41145;41146;41147;41148;41149;41150;41151;41152;41153;41154;41155;41156;41157;41158	41089	390	75	9606
LHFFMPGFAPLTSR	0	1	Unmodified	1619.8283	0.82825399	1034;406;2017;370;2010;1389	P07437;A6NNZ2;P68371;Q9BVA1;Q13885;P04350;Q3ZCM7;Q9BUF5	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB4A;TUBB8;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-6 chain	no	no	0	0	0	10.7	3.55					4	1	1						12	1			22.636	22.636	2;3	1.0602E-05	16055	DP690-14	126.5	97.487			0.86531	0.9376	11.302	13	0	Median	3395999999.9999995	1802199999.9999998	1593699999.9999998	8482	406;1034;2017;370;1389;2010	7987	16826;16827;16828;16829;16830;16831;16832;16833;16834;16835;16836;16837;16838;16839;16840;16841;16842;16843;16844	41159;41160;41161;41162;41163;41164;41165;41166;41167;41168;41169;41170;41171;41172;41173;41174;41175;41176;41177;41178;41179;41180;41181;41182;41183;41184;41185;41186;41187;41188;41189;41190;41191;41192;41193;41194;41195;41196;41197;41198;41199;41200;41201;41202;41203;41204;41205;41206;41207;41208;41209	41191		51	9606
LHFLMTGYTPLTTDQSVASVR	0	1	Oxidation (M)	2352.1784	0.17838166	567	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	1	0	13	0													1				18.104	18.104	3	0.031184	12931	DP690-13	74.505	47.173			NaN	NaN	NaN	0	0	Median	0	0	0	8483	567	7988	16845	41210	41210	753	1	9606
LHGLDEEAEQK	1	0	Unmodified	1267.6044	0.60444487	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	7	4			1								1						10.775	10.775	2	8.1093E-05	3115	DP690-3	142.98	112.82			0.87741	0.98477	8.768	2	0	Median	105010000	60656000	44359000	8484	651	7989	16846;16847	41211;41212;41213;41214;41215	41215		5	9606
LHGVNINVEASK	1	0	Unmodified	1279.6884	0.68844927	2028	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	yes	no	0	0	0	14	0														1			12.86	12.86	3	0.0022017	5886	DP690-14	81.92	55.802			0.93347	1.1356	NaN	1	0	Median	37557000	18302000	19255000	8485	2028	7990	16848	41216;41217	41217		2	9606
LHIEALLHGNITK	1	0	Unmodified	1457.8354	0.83544786	493	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	3	0			1														16.045	16.045	3	0.066551	10064	DP690-3	61.423	31.4			NaN	NaN	NaN	0	0	Median	5868400	5868400	0	8486	493	7991	16849	41218	41218		1	9606
LHIIEVGTPPTGNQPFPK	1	0	Unmodified	1944.0469	0.046897198	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	6	4		1								1							16.705	16.705	3	0.00018038	12007	DP690-10	101.01	101.01			0.81473	0.89251	19.904	2	0	Median	246800000	145660000	101140000	8487	1075	7992	16850;16851	41219;41220;41221;41222;41223;41224	41219		6	9606
LHISPSNMTNQNTNEYLEK	1	0	Oxidation (M)	2248.043	0.043010387	1222	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	1	0	12	0												1					13.594	13.594	3	3.2126E-12	6977	DP690-12	175.8	153.61			0.67474	0.76125	NaN	1	0	Median	168240000	107510000	60731000	8488	1222	7993	16852	41225;41226;41227;41228	41225	1865	4	9606
LHISPSNMTNQNTNEYLEK	1	0	Unmodified	2232.0481	0.048095765	1222	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	12	0												1					15.111	15.111	3	1.9956E-30	9125	DP690-12	214.81	196.41			0.81378	0.94832	NaN	1	0	Median	102130000	54913000	47215000	8489	1222	7993	16853	41229;41230;41231;41232	41229		4	9606
LHISPSNMTNQNTPEYMEK	1	0	2 Oxidation (M)	2265.0042	0.0041820395	1788	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	2	0	6.67	3.77				2								1					12.408	12.408	3	5.468E-12	5326	DP690-12	171.29	157.67			0.84562	0.95053	19.031	2	0	Median	93219000	54386000	38832000	8490	1788	7994	16854;16855;16856	41233;41234;41235;41236;41237;41238;41239;41240;41241;41242	41233	2353;2354	10	9606
LHISPSNMTNQNTPEYMEK	1	0	Oxidation (M)	2249.0093	0.0092674174	1788	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	1	0	12	0												1					13.454	13.454	3	7.2704E-07	6852	DP690-12	137.52	107.72			0.79288	0.9455	NaN	1	0	Median	58329000	30756000	27574000	8491	1788	7994	16857	41243;41244;41245;41246	41246	2353;2354	4	9606
LHISPSNMTNQNTPEYMEK	1	0	Unmodified	2233.0144	0.014352795	1788	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	12	0												1					14.823	14.823	3	1.4798E-10	8736	DP690-12	158.45	144.58			0.64546	0.7695	NaN	1	0	Median	54343000	32553000	21790000	8492	1788	7994	16858	41247;41248;41249;41250	41248		4	9606
LHKEPFGEISSR	1	1	Unmodified	1398.7256	0.72556306	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	1	9	0									1								11.512	11.512	3	0.00058152	4040	DP690-9	84.352	50.81			0.58432	0.6777	NaN	1	0	Median	8265800	4823500	3442300	8493	1453	7995	16859	41251;41252;41253	41253		3	9606
LHLFPDEYIPEDILK	1	0	Unmodified	1840.9611	0.96110188	2049	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	yes	yes	0	0	0	16	0																1	21.087	21.087	3	0.0016452	15934	DP690-16	77.776	56.355			0.70874	0.83001	NaN	1	0	Median	7970500	4841100	3129400	8494	2049	7996	16860	41254;41255;41256;41257;41258	41256		5	9606
LHLGIPEAVFVEDVDSFMK	1	0	Oxidation (M)	2161.0765	0.076542347	952	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	1	0	7	0							1										21.671	21.671	3	0.0010391	16568	DP690-7	77.13	61.922			1.0382	1.1215	NaN	1	0	Median	6068700	2902600	3166100	8495	952	7997	16861	41259;41260	41260	1470	2	9606
LHLIYLINDVLHHCQR	0	1	Unmodified	2043.0836	0.083633831	1608	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	11	0											1						19.639	19.639	4	0.019159	16167	DP690-11	72.681	52.031			NaN	NaN	NaN	0	0	Median	40282000	0	40282000	8496	1608	7998	16862	41261;41262	41261		2	9606
LHLQTVPSK	1	0	Unmodified	1021.592	0.59202969	1843	Q96EL2	MRPS24	28S ribosomal protein S24, mitochondrial	yes	yes	0	0	0	16	0																1	10.997	10.997	2	0.00022791	3582	DP690-16	204.27	112.64			0.75848	0.88223	NaN	1	0	Median	25594000	14379000	11214000	8497	1843	7999	16863	41263;41264;41265;41266	41265		4	9606
LHLSGIDANPNALFPPVEFPAPR	0	1	Unmodified	2471.2961	0.29612903	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														21.04	21.04	3	2.963E-10	14733	DP690-2	152.09	118.92			0.5939	0.64048	2.3058	2	0	Median	80769000	49471000	31298000	8498	789	8000	16864;16865	41267;41268;41269;41270;41271;41272;41273	41270		7	9606
LHLSTAGMTGDELSTSEVR	0	1	Oxidation (M)	2018.9579	0.95788377	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	1	0	10	0										1							14.476	14.476	3	0.060694	8741	DP690-10	68.525	44.159			NaN	NaN	NaN	0	0	Median	0	0	0	8499	1602	8001	16866	41274	41274		1	9606
LHLTPSQAAQLPLHLHLHR	0	1	Unmodified	2181.2283	0.22832423	1483	Q6P087	RPUSD3	RNA pseudouridylate synthase domain-containing protein 3	yes	yes	0	0	0	14	0														1			15.45	15.45	5	0.00059708	9494	DP690-14	75.911	66.647			0.58052	0.70393	NaN	1	0	Median	34219000	20231000	13988000	8500	1483	8002	16867	41275	41275		1	9606
LHLVDLAGSER	0	1	Unmodified	1208.6513	0.65133548	311	O95239;Q2VIQ3;Q9Y496;Q6ZMV9	KIF4A;KIF4B;KIF3A;KIF6	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B;Kinesin-like protein KIF3A;Kinesin-like protein KIF6	yes	no	0	0	0	10	0										1							15.105	15.105	2	0.010604	9641	DP690-10	105.1	0			NaN	NaN	NaN	0	0	Median	57847000	0	57847000	8501	311	8003	16868	41276;41277	41277		2	9606
LHNELQSGSLR	0	1	Unmodified	1252.6524	0.65239812	1420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	10	0										1							11.33	11.33	3	0.019816	4181	DP690-10	59.198	38.16			1.0798	1.3427	NaN	1	0	Median	83344000	41419000	41925000	8502	1420	8004	16869	41278;41279;41280;41281	41278		4	9606
LHNQQALSSSIEEGLR	0	1	Unmodified	1780.9068	0.9067749	1126	Q06587	RING1	E3 ubiquitin-protein ligase RING1	yes	yes	0	0	0	13	0													2				14.892	14.892	2;3	4.0843E-22	8568	DP690-13	243.37	221.32			0.77624	0.92564	9.6763	2	0	Median	214510000	114590000	99923000	8503	1126	8005	16870;16871	41282;41283;41284;41285;41286;41287;41288;41289;41290	41287		9	9606
LHNTIVEINNHK	1	0	Unmodified	1430.763	0.7630112	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	10	0										1							10.714	10.714	3	0.00012091	3280	DP690-10	116.74	89.639			0.99025	1.1811	NaN	1	0	Median	237480000	123620000	113860000	8504	2215	8006	16872	41291	41291		1	9606
LHPDKNPNNPNAHGDFLK	2	0	Unmodified	2026.9973	0.99732124	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	1	11	4.95			1								1			1		1	10.547	10.547	4	6.1859E-05	2881	DP690-3	113.47	98.28			0.83002	0.93445	26.719	4	0	Median	1233600000	718880000	514700000	8505	1613	8007	16873;16874;16875;16876	41292;41293;41294;41295;41296;41297;41298	41298		6	9606
LHPFHVIR	0	1	Unmodified	1017.5872	0.58721908	601	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	0	0	15	0															2		11.681	11.681	3	0.052688	4357	DP690-15	69.998	42.868			NaN	NaN	NaN	0	0	Median	0	0	0	8506	601	8008	16877;16878	41299;41300	41300		2	9606
LHPVILASIVDSYER	0	1	Unmodified	1710.9305	0.93047046	80	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	9	4					1								1				19.379	19.379	3	7.401E-16	14631	DP690-13	210.91	210.91			1.39	1.5576	53.498	2	0	Median	120080000	59447000	60636000	8507	80	8009	16879;16880	41301;41302;41303;41304;41305;41306;41307;41308	41302		8	9606
LHQEDNDYINASLIK	1	0	Unmodified	1771.8741	0.87407779	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	13	0													2				15.728	15.728	2;3	1.4425E-09	9711	DP690-13	222.81	178.2			0.86502	0.97251	3.3808	2	0	Median	383460000	208580000	174870000	8508	521	8010	16881;16882	41309;41310;41311;41312;41313;41314;41315;41316	41315		8	9606
LHQEDQACATCLILACSTAACDR	0	1	Unmodified	2663.156	0.15602478	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	6.75	3.77			2							1	1						16.963	16.963	3	2.6152E-15	12326	DP690-10	162.82	152.76			0.91322	1.0754	1.9781	2	0	Median	440170000	225440000	214730000	8509	272	8011	16883;16884;16885;16886	41317;41318;41319;41320;41321;41322;41323;41324;41325;41326	41318		10	9606
LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK	1	0	2 Oxidation (M)	3413.5769	0.57687327	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	2	0	14	0														2			13.976	13.976	4;5	4.0677E-05	7541	DP690-14	65.165	56.695			0.86787	1.0296	15.016	2	0	Median	277030000	138730000	138300000	8510	1326	8012	16887;16888	41327;41328;41329;41330	41330	2059;2060	4	9606
LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK	1	0	Oxidation (M)	3397.582	0.58195865	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	1	0	14	0														1			14.626	14.626	5	0.0012254	8371	DP690-14	53.39	39.678			0.81185	0.94121	NaN	1	0	Median	224100000	131620000	92478000	8511	1326	8012	16889	41331;41332	41332	2059;2060	2	9606
LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK	1	0	Unmodified	3381.587	0.58704403	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	14	0														2			15.443	15.443	4;5	4.2257E-05	9501	DP690-14	62.495	56.084			0.93802	1.1041	24.158	2	0	Median	361940000	202050000	159890000	8512	1326	8012	16890;16891	41333;41334	41333		2	9606
LHSFESHKDEIFQVQWSPHNETILASSGTDR	1	1	Unmodified	3594.7128	0.71277313	1142	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	1	13	0													1				16.733	16.733	5	1.5379E-06	11168	DP690-13	76.762	62.814			0.58424	0.69348	NaN	1	0	Median	46989000	21964000	25025000	8513	1142	8013	16892	41335	41335		1	9606
LHSLLGDYYQAIK	1	0	Unmodified	1519.8035	0.80347903	2429	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	12	0												1					17.916	17.916	3	1.4805E-08	13051	DP690-12	200.93	200.93			1.0764	1.2839	NaN	1	0	Median	61569000	32124000	29445000	8514	2429	8014	16893	41336;41337;41338	41338		3	9606
LHSLQPHACFR	0	1	Unmodified	1364.6772	0.67717308	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								10.99	10.99	3	0.0023132	3380	DP690-9	93.667	70.655			1.0803	1.3537	NaN	1	0	Median	7527500	3745700	3781700	8515	1264	8015	16894	41339;41340;41341;41342	41340		4	9606
LHSLVKPSVDYVCQLK	2	0	Unmodified	1885.0132	0.013154229	191	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	1	6	0						1											14.96	14.96	3	0.00014177	8133	DP690-6	109.55	87.738			0.78459	0.81109	NaN	1	0	Median	13989000	7477900	6511400	8516	191	8016	16895	41343;41344;41345;41346	41344		4	9606
LHTLEEEKEELAQYQK	2	0	Unmodified	1986.9898	0.98983583	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	1	10	0										2							14.819	14.819	3;4	1.9288E-07	9255	DP690-10	154.13	133.57			0.77415	0.90786	NaN	1	0	Median	241240000	165180000	76062000	8517	2424	8017	16896;16897	41347;41348;41349;41350;41351	41347		5	9606
LHTNKGDLNLELHCDLTPK	2	0	Unmodified	2217.1212	0.12120113	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	1	12	0												1					14.166	14.166	4	0.00073888	7692	DP690-12	77.795	58.07			0.7815	0.87963	NaN	1	0	Median	133750000	70760000	62993000	8518	1200	8018	16898	41352;41353	41352		2	9606
LHVGNISPTCTNK	1	0	Unmodified	1439.7191	0.71909747	2028	Q9BWF3	RBM4	RNA-binding protein 4	yes	yes	0	0	0	14	0														1			11.943	11.943	3	0.00021294	4603	DP690-14	107.39	70.708			0.78958	0.96028	NaN	1	0	Median	37152000	15841000	21311000	8519	2028	8019	16899	41354;41355;41356	41355		3	9606
LHVSTINLQK	1	0	Unmodified	1151.6663	0.66625727	727	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	2	0		1															13.207	13.207	2	0.012293	5578	DP690-2	80.455	49.226			1.225	1.2069	NaN	1	0	Median	2512200	1068400	1443900	8520	727	8020	16900	41357;41358;41359	41357		3	9606
LHYCVSCAIHSK	1	0	Unmodified	1473.6857	0.68568885	996	P62854;Q5JNZ5	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	yes	no	0	0	0	16	0																1	11.538	11.538	3	9.7362E-05	4103	DP690-16	147.58	125.76			0.99166	1.1284	NaN	1	0	Median	42923000	20748000	22175000	8521	996	8021	16901	41360;41361;41362;41363	41363		4	9606
LIADVAPSAIR	0	1	Unmodified	1124.6554	0.65535823	700	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	13	0													1				15.818	15.818	2	0.0001982	9830	DP690-13	123.21	45.286			0.70428	0.82808	NaN	1	0	Median	133140000	78033000	55104000	8522	700	8022	16902	41364;41365;41366;41367	41366		4	9606
LIAHAGSLLNLAK	1	0	Unmodified	1319.7925	0.79252041	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	12	0												1					16.088	16.088	3	7.6146E-05	10576	DP690-12	117.95	117.95			0.94528	1.0797	NaN	1	0	Median	139210000	70328000	68879000	8523	2450	8023	16903	41368;41369;41370	41370		3	9606
LIALLEVLSQK	1	0	Unmodified	1225.7646	0.76457433	549;1270;250	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	9.77	2.98		1	1	2					1	20	1	1	1	1	1	1	24.569	24.569	2	1.7318E-06	17802	DP690-9	222.42	157.17			0.84441	0.97514	15.406	21	0	Median	1872399999.9999998	999090000	873260000	8524	549;250;1270	8024	16904;16905;16906;16907;16908;16909;16910;16911;16912;16913;16914;16915;16916;16917;16918;16919;16920;16921;16922;16923;16924;16925;16926;16927;16928;16929;16930;16931;16932;16933;16934	41371;41372;41373;41374;41375;41376;41377;41378;41379;41380;41381;41382;41383;41384;41385;41386;41387;41388;41389;41390;41391;41392;41393;41394;41395;41396;41397;41398;41399;41400;41401;41402;41403;41404;41405;41406;41407;41408;41409;41410;41411;41412;41413;41414;41415;41416;41417;41418;41419;41420;41421;41422;41423;41424;41425;41426;41427;41428;41429;41430;41431;41432;41433;41434;41435;41436;41437;41438;41439;41440;41441;41442;41443;41444;41445;41446;41447;41448	41446		78	9606
LIALLEVLSQKK	2	0	Unmodified	1353.8595	0.85953735	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	11.8	2.67									1	2	1				1	1	20.096	20.096	2;3	1.0395E-10	16808	DP690-10	247.22	244.36			0.83366	0.9851	18.707	6	0	Median	675460000	356750000	318710000	8525	549	8025	16935;16936;16937;16938;16939;16940	41449;41450;41451;41452;41453;41454;41455;41456;41457;41458;41459;41460;41461;41462;41463;41464;41465	41452		17	9606
LIALLEVLSQKR	1	1	Unmodified	1381.8657	0.86568536	1270;250	O75369;Q14315	FLNB;FLNC	Filamin-B;Filamin-C	no	no	0	0	1	10	0										1							20.336	20.336	3	8.473E-06	17182	DP690-10	187.42	144.61			0.97594	1.1988	NaN	1	0	Median	110550000	56967000	53582000	8526	250;1270	8026	16941	41466;41467;41468;41469	41466		4	9606
LIANMPESGPSYEFHLTR	0	1	Oxidation (M)	2076.9939	0.99387535	1870	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	1	0	4	0				1													16.205	16.205	3	0.00019653	10141	DP690-4	102.84	82.906			0.90259	1.0337	NaN	1	0	Median	21210000	10894000	10316000	8527	1870	8027	16942	41470;41471;41472	41470	2426	3	9606
LIAPVAEEEATVPNNK	1	0	Unmodified	1693.8887	0.88866522	400	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	6	0						1											15.518	15.518	2	0.00052933	8650	DP690-6	105.36	76.114			1.3487	1.5464	NaN	1	0	Median	10268000	4756300	5511300	8528	400	8028	16943	41473;41474	41473		2	9606
LIASYCNVGDIEGASK	1	0	Unmodified	1695.8138	0.81378572	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10	0										3							16.595	16.595	2	0.0023523	11865	DP690-10	142.12	90.841			NaN	NaN	NaN	0	0	Median	0	0	0	8529	732	8029	16944;16945;16946	41475;41476;41477	41477		3	9606
LIAVEDKDQENMR	1	1	Oxidation (M)	1575.7563	0.75627084	2578				yes	yes	0	1	1	15	0															1		13.05	13.05	3	0.013471	6098	DP690-15	63.864	14.381	+		0.73598	0.84435	NaN	1	0	Median	35039000	19217000	15822000	8530	2578	8030	16947	41478;41479	41479	2991	2	9606
LIDDYGVEEEPAELPEGTSLTVDNKR	1	1	Unmodified	2888.3927	0.39272735	1073	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	1	14	0														2			18.012	18.012	3	1.6865E-08	13011	DP690-14	134.56	112.3			0.70206	0.88291	NaN	1	0	Median	38693000	22848000	15845000	8531	1073	8031	16948;16949	41480;41481	41480		1	9606
LIDFGLAR	0	1	Unmodified	903.5178	0.51780212	1348	Q15746	MYLK	Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form	yes	yes	0	0	0	10	0										1							18.164	18.164	2	0.057913	14070	DP690-10	99.375	0			NaN	NaN	NaN	0	0	Median	0	0	0	8532	1348	8032	16950	41482	41482		1	9606
LIDFLECGK	1	0	Unmodified	1093.5478	0.54778161	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	9.25	3.27				1					1			2					18.636	18.636	1;2	0.00031536	14041	DP690-12	159.2	72.724			0.93305	0.68407	35.181	4	0	Linear	1810099999.9999998	950040000	860050000	8533	517	8033	16951;16952;16953;16954	41483;41484;41485;41486;41487;41488;41489;41490;41491;41492;41493	41488		11	9606
LIDFLESGK	1	0	Unmodified	1020.5492	0.54916182	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	10.5	0.866									1		3						18.495	18.495	2	0.00045059	14318	DP690-11	153.04	89.888			0.72488	0.82509	26.066	2	0	Median	781000000	454980000	326020000	8534	1793	8034	16955;16956;16957;16958	41494;41495;41496;41497;41498;41499;41500;41501;41502;41503	41495		10	9606
LIDGIVLTK	1	0	Unmodified	970.60628	0.60628277	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	12	0												1					17.236	17.236	2	0.002347	12117	DP690-12	111.17	48.45			0.81051	0.9316	NaN	1	0	Median	126280000	70029000	56252000	8535	417	8035	16959	41504;41505;41506	41505		3	9606
LIDHLENTK	1	0	Unmodified	1081.5768	0.57677356	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	13	0													1				11.033	11.033	3	0.00015381	3463	DP690-13	146.79	99.704			NaN	NaN	NaN	0	0	Median	1231100	1231100	0	8536	2090	8036	16960	41507;41508	41507		2	9606
LIDIFYPGDQQSVTFGTK	1	0	Unmodified	2028.0204	0.020407676	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						21.521	21.521	2	4.8412E-18	18873	DP690-11	212.83	193.51			0.85495	1.022	NaN	1	0	Median	100720000	54713000	46008000	8537	891	8037	16961	41509;41510;41511;41512	41512		4	9606
LIDLEHLLFER	0	1	Unmodified	1396.7715	0.77145062	1630	Q8IYW5	RNF168	E3 ubiquitin-protein ligase RNF168	yes	yes	0	0	0	11	0											1						22.334	22.334	3	0.00073284	19699	DP690-11	96.756	75.455			1.4767	1.8129	NaN	1	0	Median	5721600	2518900	3202600	8538	1630	8038	16962	41513;41514	41514		2	9606
LIDLHSPSEIVK	1	0	Unmodified	1349.7555	0.7554662	928	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	12	4								2								2	15.685	15.685	2;3	5.3909E-05	8869	DP690-8	148.94	87.265			0.82237	0.89351	4.7114	4	0	Median	1406900000	740610000	666280000	8539	928	8039	16963;16964;16965;16966	41515;41516;41517;41518;41519;41520;41521;41522;41523;41524;41525;41526;41527;41528;41529;41530	41527		16	9606
LIDPQVDESR	0	1	Unmodified	1170.5881	0.58806652	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	2	0		1															13.547	13.547	2	0.0033759	6040	DP690-2	93.178	52.91			1.0777	1.1139	NaN	1	0	Median	4179800	2314600	1865300	8540	1453	8040	16967	41531	41531		1	9606
LIDTVKDPVSK	2	0	Unmodified	1213.6918	0.69180331	539	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	1	6	0						1											12.568	12.568	3	0.023258	5139	DP690-6	59.265	21.757			0.80995	0.8373	NaN	1	0	Median	6079400	3827000	2252400	8541	539	8041	16968	41532;41533	41532		2	9606
LIDWGLAEFYHPAQEYNVR	0	1	Unmodified	2320.1277	0.12766671	539	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	14	0														1			20.647	20.647	3	4.5514E-10	16399	DP690-14	150.92	130.72			0.83758	1.0126	NaN	1	0	Median	55488000	30052000	25436000	8542	539	8042	16969	41534;41535;41536	41534		3	9606
LIDWGLAEFYHPGQEYNVR	0	1	Unmodified	2306.112	0.11201665	1035	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	14	0														1			20.607	20.607	3	0.0099802	16388	DP690-14	94.61	54.61			NaN	NaN	NaN	0	0	Median	22417000	22417000	0	8543	1035	8043	16970	41537	41537		1	9606
LIEADISKR	1	1	Unmodified	1043.5975	0.597509	1883	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	1	12	0												1					11.558	11.558	3	0.0061992	4380	DP690-12	98.582	42.15			NaN	NaN	NaN	0	0	Median	1466200	0	1466200	8544	1883	8044	16971	41538;41539	41539		2	9606
LIEDNEYTAR	0	1	Unmodified	1222.583	0.58298115	412;477	P07947;P06241;P06239;P12931	YES1;FYN;LCK;SRC	Tyrosine-protein kinase Yes;Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Lck;Proto-oncogene tyrosine-protein kinase Src	no	no	0	0	0	12	0												1					13.211	13.211	2	5.5369E-05	6400	DP690-12	200.86	160.79			1.7624	1.936	NaN	1	0	Median	340020000	153040000	186980000	8545	412;477	8045	16972	41540;41541;41542;41543	41540		4	9606
LIEDSTLSK	1	0	Unmodified	1004.539	0.53899107	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															12.891	12.891	2	0.0026875	5289	DP690-2	109.11	31.827			0.57028	0.57599	NaN	1	0	Median	17639000	8954500	8684600	8546	2418	8046	16973	41544;41545;41546;41547;41548	41548		5	9606
LIEGLSHEVIVSAACGR	0	1	Unmodified	1809.9407	0.94071757	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	10.3	3.5				1	1				1	1		2	1	2			16.902	16.902	2;3	4.0106E-24	11605	DP690-12	282.91	251.84			0.89372	1.0239	12.499	8	0	Median	3650399999.9999995	1904999999.9999998	1745399999.9999998	8547	2298	8047	16974;16975;16976;16977;16978;16979;16980;16981;16982	41549;41550;41551;41552;41553;41554;41555;41556;41557;41558;41559;41560;41561;41562;41563;41564;41565;41566;41567;41568;41569;41570;41571;41572;41573;41574;41575;41576;41577;41578;41579;41580;41581;41582;41583	41553		35	9606
LIEIENFK	1	0	Unmodified	1004.5542	0.5542472	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							17.176	17.176	2	0.00042988	12601	DP690-10	143.11	13.424			NaN	NaN	NaN	0	0	Median	51515000	51515000	0	8548	1285	8048	16983	41584;41585	41584		2	9606
LIELHSPDSR	0	1	Unmodified	1165.6091	0.60913632	1208	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	12	0												1					12.82	12.82	3	0.0030146	5920	DP690-12	85.29	64.319			0.49897	0.60788	NaN	1	0	Median	9193200	6268300	2924900	8549	1208	8049	16984	41586;41587;41588;41589	41587		4	9606
LIEMTAEYACTR	0	1	Oxidation (M)	1472.664	0.66395036	2134	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	1	0	12	0												1					13.783	13.783	2	0.00026705	7303	DP690-12	123.11	105.53			1.059	1.277	NaN	1	0	Median	17107000	10972000	6134900	8550	2134	8050	16985	41590	41590	2629	1	9606
LIEQYELREEHIDK	1	1	Unmodified	1813.921	0.92102798	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	1	11	0											1						13.903	13.903	4	0.0020532	7781	DP690-11	76.24	54.026			0.88184	0.9845	NaN	1	0	Median	193520000	100610000	92905000	8551	701	8051	16986	41591;41592	41591		2	9606
LIESLFTIQK	1	0	Unmodified	1190.6911	0.69107503	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	9.33	0.471									2	1							19.509	19.509	2	0.00070251	16046	DP690-10	112.84	74.756			0.93328	1.152	NaN	1	0	Median	87419000	44162000	43257000	8552	1158	8052	16987;16988;16989	41593;41594;41595;41596;41597;41598	41593		6	9606
LIEVANLACSISNNEEGVK	1	0	Unmodified	2059.0256	0.025569409	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											1						19.454	19.454	2	3.3776E-23	15808	DP690-11	228.25	198.19			0.73452	0.891	NaN	1	0	Median	74592000	38095000	36497000	8553	657	8053	16990	41599;41600;41601;41602;41603	41600		5	9606
LIEVDDER	0	1	Unmodified	987.48729	0.48728985	989	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	15	0															1		13.12	13.12	2	0.039727	6262	DP690-15	126.28	95.774			0.99544	1.067	NaN	1	0	Median	220570000	106440000	114130000	8554	989	8054	16991	41604	41604		0	9606
LIEVNGQNVEGLR	0	1	Unmodified	1439.7732	0.77324153	1339	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	yes	yes	0	0	0	14	0														1			16.144	16.144	2	0.00012388	10460	DP690-14	152.7	93.347			0.75266	0.90979	NaN	1	0	Median	55962000	32223000	23739000	8555	1339	8055	16992	41605;41606	41605		2	9606
LIFPITSQNPNELSDFTLR	0	1	Unmodified	2204.1477	0.14773345	2295	Q9P0V3	SH3BP4	SH3 domain-binding protein 4	yes	yes	0	0	0	11	0											1						22.363	22.363	2	7.5473E-12	19754	DP690-11	175.88	132.48			0.72185	0.89334	NaN	1	0	Median	9405500	5379900	4025600	8556	2295	8056	16993	41607;41608;41609;41610	41609		4	9606
LIGEYGLR	0	1	Unmodified	919.51272	0.51271674	760	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	15	0															1		15.506	15.506	2	0.04834	9441	DP690-15	97.602	7.9285			NaN	NaN	NaN	0	0	Median	290930000	0	290930000	8557	760	8057	16994	41611	41611		1	9606
LIGFMRPENGNPQQMQQELQR	0	2	Oxidation (M)	2529.2217	0.22166023	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	1	1	10	0										3							15.696	15.696	3	0.00050733	10022	DP690-10	85.177	72.686			0.90447	1.0773	NaN	1	0	Median	173690000	132290000	41401000	8558	272	8058	16995;16996;16997	41612;41613;41614;41615;41616;41617	41614	293;294	6	9606
LIGFMRPENGNPQQMQQELQR	0	2	2 Oxidation (M)	2545.2166	0.21657485	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	2	1	6	3			1						1								14.278	14.278	3	0.00013323	7700	DP690-3	118.52	87.053			NaN	NaN	NaN	0	0	Median	9665100	9665100	0	8559	272	8058	16998;16999	41618;41619;41620;41621	41619	293;294	4	9606
LIGLMNNEAAQESTR	0	1	Oxidation (M)	1661.8043	0.80428367	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	1	0	12.2	0.433												3	1				14.414	14.414	2	4.0272E-05	7848	DP690-13	162.68	123.06			0.88505	1.0867	NaN	1	0	Median	52767000	40874000	11893000	8560	1589	8059	17000;17001;17002;17003	41622;41623;41624;41625;41626;41627	41627	2250	6	9606
LIGLMNNEAAQESTR	0	1	Unmodified	1645.8094	0.80936904	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	12	0												4					16.081	16.081	2	4.8727E-15	10511	DP690-12	223.77	160.7			NaN	NaN	NaN	0	0	Median	0	0	0	8561	1589	8059	17004;17005;17006;17007	41628;41629;41630;41631	41630		4	9606
LIGLSATLPNYEDVATFLR	0	1	Unmodified	2092.1205	0.12045607	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	9.5	0.5									1	1							23.863	23.863	2	1.678E-06	19353	DP690-9	137.81	137.81			1.03	1.2675	NaN	1	0	Median	2363000	1083900	1279000	8562	269	8060	17008;17009	41632;41633;41634;41635;41636	41634		5	9606
LIGNHPDVLPFALR	0	1	Unmodified	1560.8776	0.87764703	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								18.25	18.25	3	0.0034326	12730	DP690-9	74.133	52.273			0.5625	0.70443	NaN	1	0	Median	8110800	5383100	2727800	8563	2217	8061	17010	41637;41638	41638		2	9606
LIGNMALLPIR	0	1	Oxidation (M)	1225.7217	0.72166366	140	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	0	1	0	13	3.56								1							1	1	18.093	18.093	2	0.00052521	12332	DP690-16	119.41	90.03			0.79612	0.89475	4.4595	3	0	Plateau	113460000	62212000	51251000	8564	140	8062	17011;17012;17013	41639;41640;41641;41642;41643;41644;41645;41646;41647;41648;41649;41650	41643	159	12	9606
LIGPLSHSILTEAIK	1	0	Unmodified	1590.9345	0.9344932	1943	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	11	0											1						18.557	18.557	3	0.0011315	14564	DP690-11	84.173	40.579			0.7354	0.90223	NaN	1	0	Median	21050000	12337000	8712300	8565	1943	8063	17014	41651;41652	41652		2	9606
LIGQIVSSITASLR	0	1	Unmodified	1456.8613	0.86132826	1521;452	P0DPH7;P0DPH8;Q6PEY2;Q71U36	TUBA3E;TUBA1A	Tubulin alpha-3E chain;Tubulin alpha-1A chain	no	no	0	0	0	10.3	3.77					1								2				22.856	22.856	2	2.0269E-14	17645	DP690-5	227.36	196.53			0.752	0.83013	45.14	2	0	Median	131050000	65726000	65325000	8566	452;1521	8064	17015;17016;17017	41653;41654;41655;41656;41657;41658;41659	41659		7	9606
LIHEPSAALLAYGIGQDSPTGK	1	0	Unmodified	2237.1692	0.16919718	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	12	0												1					18.257	18.257	3	0.00021939	13541	DP690-12	100.53	100.53			0.81265	0.9525	NaN	1	0	Median	93402000	50233000	43169000	8567	1147	8065	17018	41660;41661;41662;41663;41664;41665	41660		6	9606
LIHGLSMSMDSEEAMINK	1	0	3 Oxidation (M)	2052.9166	0.91661259	1228	Q13617	CUL2	Cullin-2	yes	yes	0	3	0	3	0			1														13.387	13.387	3	2.1539E-05	6537	DP690-3	139.34	95.58			NaN	NaN	NaN	0	0	Median	19835000	0	19835000	8568	1228	8066	17019	41666;41667;41668	41668	1879;1880;1881	3	9606
LIHIPINNIIVGG	0	0	Unmodified	1371.8238	0.82382054	918	P60059	SEC61G	Protein transport protein Sec61 subunit gamma	yes	yes	0	0	0	16	0																1	20.698	20.698	2	0.0046737	15365	DP690-16	119.17	96.487			NaN	NaN	NaN	0	0	Median	0	0	0	8569	918	8067	17020	41669;41670	41669		2	9606
LIHPDEDISLEER	0	1	Unmodified	1564.7733	0.77330111	184	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	0	12	0												2					14.999	14.999	2;3	1.0366E-10	8990	DP690-12	220.82	139.29			0.76564	0.8355	2.9807	2	0	Median	1287700000	714360000	573320000	8570	184	8068	17021;17022	41671;41672;41673;41674;41675;41676;41677;41678;41679;41680;41681	41680		11	9606
LIHPDEDISLEERR	0	2	Unmodified	1720.8744	0.87441214	184	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	1	12	0												1					13.734	13.734	4	7.6799E-05	7180	DP690-12	110.98	87.16			0.7732	0.87669	NaN	1	0	Median	299510000	163240000	136270000	8571	184	8069	17023	41682;41683	41683		2	9606
LIINELSNVMEANAAR	0	1	Oxidation (M)	1772.9091	0.90908309	1908	Q96P70	IPO9	Importin-9	yes	yes	0	1	0	3	0			1														17.968	17.968	2	0.0024101	12623	DP690-3	90.697	56.811			0.6301	0.70714	NaN	1	0	Median	7821200	4171200	3650000	8572	1908	8070	17024	41684	41684	2450	1	9606
LIITEETAK	1	0	Unmodified	1016.5754	0.57537657	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	8.33	3.3				1					1			1					13.643	13.643	2	0.00031881	6969	DP690-12	159.04	53.649			0.89319	0.99433	18.191	3	0	Median	2059699999.9999998	1030499999.9999999	1029199999.9999999	8573	2210	8071	17025;17026;17027	41685;41686;41687;41688;41689;41690;41691;41692;41693;41694;41695;41696;41697;41698;41699;41700	41687		16	9606
LIIWDSYTTNK	1	0	Unmodified	1352.6976	0.69761697	1001;999	P62873;P62879;Q9HAV0	GNB1;GNB2;GNB4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4	no	no	0	0	0	14	0														1			18.415	18.415	2	1.5368E-06	13597	DP690-14	164.68	106.72			NaN	NaN	NaN	0	0	Median	103180000	103180000	0	8574	999;1001	8072	17028	41701;41702	41701		2	9606
LIKDDFLQQNGYTPYDR	1	1	Unmodified	2085.0167	0.016719282	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	1	12	0												1					17.018	17.018	3	0.00030156	11865	DP690-12	97.129	69.416			0.48197	0.61514	NaN	1	0	Median	34121000	21155000	12967000	8575	694	8073	17029	41703;41704	41703		2	9606
LIKEPAPDSGLLGLFQGQNSLLH	1	0	Unmodified	2446.322	0.32200943	1817	Q96AB3	ISOC2	Isochorismatase domain-containing protein 2, mitochondrial	yes	yes	0	0	1	7.5	0.5							1	1									21.674	21.674	3	0.00010528	15426	DP690-8	116.27	105.05			0.71378	0.8023	1.3775	2	0	Median	19258000	12327000	6930500	8576	1817	8074	17030;17031	41705;41706;41707;41708;41709;41710;41711;41712	41710		8	9606
LIKNLVKEEQEK	3	0	Unmodified	1469.8453	0.84534384	2364	Q9UJY4	GGA2	ADP-ribosylation factor-binding protein GGA2	yes	yes	0	0	2	9	0									1								27.451	27.451	2	0.074377	22907	DP690-9	126.24	59.675			NaN	NaN	NaN	0	0	Median	1107300	1107300	0	8577	2364	8075	17032	41713	41713		1	9606
LILCCNSTSK	1	0	Unmodified	1194.5737	0.57367879	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	14	0														1			12.723	12.723	2	0.00077498	5712	DP690-14	110.76	93.288			0.89305	1.0772	NaN	1	0	Median	94137000	51925000	42212000	8578	712	8076	17033	41714;41715	41715		2	9606
LILDVFCGSQMHFVR	0	1	Oxidation (M)	1836.9015	0.90149529	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	1	0	4	0				2													18.893	18.893	2;3	0.000107	13401	DP690-4	114.7	86.159			0.91663	1.0237	7.5617	2	0	Median	81802000	41621000	40181000	8579	469	8077	17034;17035	41716;41717;41718;41719;41720;41721;41722;41723	41717	558	8	9606
LILEVHQFSR	0	1	Unmodified	1240.6928	0.69280637	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										3							15.524	15.524	3	0.00040549	10268	DP690-10	143.03	59.035			NaN	NaN	NaN	0	0	Median	0	0	0	8580	1080	8078	17036;17037;17038	41724;41725;41726	41725		3	9606
LILISTNGSFIR	0	1	Unmodified	1332.7765	0.776536	1508	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	14	0														1			19.416	19.416	2	0.012813	14972	DP690-14	74.162	48.541			0.5257	0.63745	NaN	1	0	Median	34059000	25206000	8853000	8581	1508	8079	17039	41727	41727		1	9606
LILKNENVDR	1	1	Unmodified	1212.6826	0.68263561	1677	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	1	14	0														1			11.392	11.392	3	0.0021544	3943	DP690-14	90.15	55.43			0.96193	1.207	NaN	1	0	Median	19783000	9604500	10179000	8582	1677	8080	17040	41728	41728		1	9606
LILPHVPAILQYLSK	1	0	Unmodified	1704.0338	0.033813316	271	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	10	0										1							22.072	22.072	3	0.037779	19552	DP690-10	81.448	81.448			0.71716	0.87144	NaN	1	0	Median	17364000	12903000	4461500	8583	271	8081	17041	41729	41729		0	9606
LILPVGPAGGNQMLEQYDK	1	0	Oxidation (M)	2058.0456	0.045576569	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	0	7	0							1										18.498	18.498	2	0.00027458	12733	DP690-7	113.53	97.771			0.78874	0.8538	NaN	1	0	Median	28668000	15794000	12874000	8584	557	8082	17042	41730;41731;41732;41733	41730	719	4	9606
LILPVGPAGGNQMLEQYDK	1	0	Unmodified	2042.0507	0.050661947	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	7	0							1										20.018	20.018	2	0.0016113	14668	DP690-7	85.006	85.006			0.62892	0.68588	NaN	1	0	Median	10215000	6336100	3878500	8585	557	8082	17043	41734;41735;41736	41735		3	9606
LILPVGPAGGNQMLEQYDKLQDGSIK	2	0	Oxidation (M)	2799.4477	0.44768022	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	1	7	0							1										18.692	18.692	3	5.49E-11	12873	DP690-7	156.05	156.05			0.72717	0.77746	NaN	1	0	Median	150610000	91258000	59354000	8586	557	8083	17044	41737;41738;41739;41740	41737	719	4	9606
LILPVGPAGGNQMLEQYDKLQDGSIK	2	0	Unmodified	2783.4528	0.4527656	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	1	7	0							1										20.324	20.324	3	2.7089E-12	14988	DP690-7	149	122.09			NaN	NaN	NaN	0	0	Median	12548000	0	12548000	8587	557	8083	17045	41741;41742	41742		2	9606
LILSLEGGYNLR	0	1	Unmodified	1346.7558	0.75580056	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	3	0			2														19.477	19.477	2	1.7238E-13	14476	DP690-3	226.47	127.47			NaN	NaN	NaN	0	0	Median	0	0	0	8588	2316	8084	17046;17047	41743;41744	41744		2	9606
LILYNDGDSLQYIER	0	1	Unmodified	1810.9101	0.91012895	871	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	12	0												1					19.441	19.441	2	2.1454E-14	15167	DP690-12	218.07	218.07			0.84245	1.0043	NaN	1	0	Median	32159000	16922000	15237000	8589	871	8085	17048	41745;41746;41747;41748	41746		4	9606
LINLVDWSEAFATVVTAAEK	1	0	Unmodified	2176.1416	0.14158544	2311	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	11	0											2						27.614	27.614	2	0.00041254	25534	DP690-11	127.71	97.905			NaN	NaN	NaN	0	0	Median	768940	768940	0	8590	2311	8086	17049;17050	41749;41750;41751	41749		3	9606
LINLVGESLR	0	1	Unmodified	1112.6554	0.65535823	754	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	3	0			1														17.97	17.97	2	0.0083597	12679	DP690-3	98.033	54.787			2.9647	3.2998	NaN	1	0	Median	6052800	1526100	4526700	8591	754	8087	17051	41752	41752		1	9606
LINRPIIVFR	0	2	Unmodified	1239.7816	0.7815618	1366	Q16658	FSCN1	Fascin	yes	yes	0	0	1	9.67	4.03				1								1	1				16.08	16.08	3	0.0012137	10575	DP690-12	95.502	95.502			0.73324	0.83138	5.3952	3	0	Median	212540000	114990000	97547000	8592	1366	8088	17052;17053;17054	41753;41754;41755;41756;41757;41758;41759;41760	41754		8	9606
LIPDGCGVK	1	0	Unmodified	957.49535	0.49535211	601	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	15	0															1		12.506	12.506	2	0.0058941	5197	DP690-15	96.19	62.675			0.82659	0.89085	NaN	1	0	Median	275890000	147880000	128010000	8593	601	8089	17055	41761;41762;41763	41761		3	9606
LIPDSIGKDIEK	2	0	Unmodified	1326.7395	0.73948179	946	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	14.5	0.5														1	1		14.821	14.821	3	0.0030051	8640	DP690-14	81.709	50.641			0.92154	1.0408	4.8417	2	0	Median	451320000	227570000	223760000	8594	946	8090	17056;17057	41764;41765;41766;41767;41768;41769;41770	41765		7	9606
LIPYTSVEDFDWCTPPK	1	0	Unmodified	2066.9659	0.96592926	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							21.012	21.012	2	0.0029833	18062	DP690-10	115.34	75.762			NaN	NaN	NaN	0	0	Median	24859000	24859000	0	8595	13	8091	17058	41771	41771		1	9606
LIQAIDHNEGFSLI	0	0	Unmodified	1568.8199	0.81985737	1416	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	3	0			1														20.497	20.497	2	0.0023608	15708	DP690-3	130.94	89.657			NaN	NaN	NaN	0	0	Median	0	0	0	8596	1416	8092	17059	41772;41773;41774	41772		3	9606
LIQDQQEQIQHLK	1	0	Unmodified	1619.8631	0.86311917	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	10	0										1							13.077	13.077	3	2.0416E-05	6652	DP690-10	132.17	132.17			0.71281	0.83165	NaN	1	0	Median	317880000	189900000	127980000	8597	1794	8093	17060	41775;41776	41775		2	9606
LIQEQHPEEELIK	1	0	Unmodified	1604.841	0.84098675	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							14.004	14.004	3	0.00071247	8057	DP690-10	92.295	59.865			0.84046	1.017	NaN	1	0	Median	196250000	110710000	85535000	8598	1236	8094	17061	41777;41778;41779;41780	41777		4	9606
LIQLMEEIMAEKENK	2	0	2 Oxidation (M)	1849.9165	0.91653623	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	2	1	11.5	0.5											1	1					15.028	15.028	3	5.1455E-06	9468	DP690-11	137.81	137.81			0.78441	0.88766	6.0688	2	0	Median	276240000	151060000	125180000	8599	1793	8095	17062;17063	41781;41782;41783;41784;41785;41786;41787;41788	41783	2360;2361	8	9606
LIQLMEEIMAEKENK	2	0	Oxidation (M)	1833.9216	0.92162161	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	1	1	11	0											1						16.36	16.36	3	0.021003	11461	DP690-11	55.975	33.119			0.81375	0.9471	NaN	1	0	Median	68816000	35647000	33169000	8600	1793	8095	17064	41789	41789	2360;2361	1	9606
LIQLMEEIMAEKENK	2	0	Unmodified	1817.9267	0.92670699	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	1	11	0											1						19.542	19.542	3	1.0999E-08	15986	DP690-11	195.87	146.66			0.77707	0.88364	NaN	1	0	Median	136020000	68142000	67880000	8601	1793	8095	17065	41790;41791;41792	41791		3	9606
LIQNLDANHDGR	0	1	Unmodified	1364.6797	0.6796755	1854	Q96FQ6	S100A16	Protein S100-A16	yes	yes	0	0	0	12	4								2								2	11.432	11.432	2;3	8.3299E-05	3976	DP690-8	166.69	146.03			0.95832	1.124	96.104	3	0	Median	80070000	35262000	44808000	8602	1854	8096	17066;17067;17068;17069	41793;41794;41795;41796;41797;41798;41799;41800	41799		8	9606
LIQSHPESAEDLQEK	1	0	Unmodified	1722.8424	0.84244331	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							11.995	11.995	3	0.00040463	5131	DP690-10	94.45	94.45			0.81428	0.96231	NaN	1	0	Median	268200000	152000000	116200000	8603	1236	8097	17070	41801;41802	41801		2	9606
LISEIEYR	0	1	Unmodified	1021.5444	0.5444108	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	8.33	3.77			1								2						15.118	15.118	2	0.00023903	8782	DP690-3	150.17	30.992			NaN	NaN	NaN	0	0	Median	328220000	0	328220000	8604	1758	8098	17071;17072;17073	41803;41804;41805;41806;41807	41807		5	9606
LISLFQAMK	1	0	Oxidation (M)	1065.5893	0.5892525	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9.67	0.471									1	2							18.345	18.345	2	0.015243	11891	DP690-9	90.37	57.529			0.76046	0.89727	37.749	3	0	Plateau	365250000	203180000	162070000	8605	1319	8099	17074;17075;17076	41808;41809;41810;41811;41812;41813;41814	41814	2025	7	9606
LISLFQAMK	1	0	Unmodified	1049.5943	0.59433788	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.816									1	1	1						19.802	19.802	2	0.00056785	14591	DP690-9	147.69	89.526			0.84598	1.0627	8.6782	3	0	Median	297220000	158830000	138390000	8606	1319	8099	17077;17078;17079	41815;41816;41817;41818;41819;41820;41821;41822;41823;41824;41825	41822		11	9606
LISQIVSSITASLR	0	1	Unmodified	1486.8719	0.87189295	1032;1977;1033	P68363;Q9H853;Q9BQE3;P68366	TUBA1B;TUBA4B;TUBA1C;TUBA4A	Tubulin alpha-1B chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1C chain;Tubulin alpha-4A chain	no	no	0	0	0	10.7	3.59					2				2				3	1	1		23.33	23.33	2	3.7277999999999997E-90	19394	DP690-13	301.11	232.27			0.95834	1.1467	3.4515	4	0	Median	1520699999.9999998	579060000	941660000	8607	1032;1977;1033	8100	17080;17081;17082;17083;17084;17085;17086;17087;17088	41826;41827;41828;41829;41830;41831;41832;41833;41834;41835;41836;41837;41838;41839;41840	41830		15	9606
LISSDGHEFIVK	1	0	Unmodified	1343.7085	0.70851601	1327	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	8	0								1									14.965	14.965	3	0.061344	8143	DP690-8	62.799	33.554			NaN	NaN	NaN	0	0	Median	5899500	0	5899500	8608	1327	8101	17089	41841	41841		1	9606
LISSDGHEFIVKR	1	1	Unmodified	1499.8096	0.80962704	1327	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	1	8	0								1									13.085	13.085	4	0.00017373	5954	DP690-8	138.75	94.116			NaN	NaN	NaN	0	0	Median	1470800	0	1470800	8609	1327	8102	17090	41842;41843	41843		2	9606
LISTLIYK	1	0	Unmodified	949.58482	0.58481905	128	O14980	XPO1	Exportin-1	yes	yes	0	0	0	3	0			1														16.517	16.517	2	0.056176	10678	DP690-3	111.65	111.65			1.1571	1.2424	NaN	1	0	Median	20101000	8854800	11246000	8610	128	8103	17091	41844	41844		0	9606
LISWYDNEFGYSNR	0	1	Unmodified	1762.7951	0.79509919	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	10	4						1								1			19.702	19.702	2	7.0106E-05	13666	DP690-6	137.89	115.36			1.1956	1.3947	16.56	2	0	Median	77672000	37317000	40355000	8611	371	8104	17092;17093	41845;41846;41847;41848;41849;41850	41848		6	9606
LITPAVVSER	0	1	Unmodified	1083.6288	0.62880913	995	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	12	4								1								1	15.004	15.004	2	0.00063119	8062	DP690-8	114.89	47.725			0.90324	0.96823	8.3533	2	0	Median	568150000	302770000	265380000	8612	995	8105	17094;17095	41851;41852;41853;41854;41855;41856;41857;41858;41859	41858		9	9606
LITPLAFALTSDNR	0	1	Unmodified	1530.8406	0.84059282	1718	Q8TCG1	KIAA1524	Protein CIP2A	yes	yes	0	0	0	3	0			1														21.723	21.723	2	0.0048996	17049	DP690-3	112.94	72.21			NaN	NaN	NaN	0	0	Median	1261200	1261200	0	8613	1718	8106	17096	41860;41861	41860		2	9606
LITQTFSHHNQLAQK	1	0	Unmodified	1764.9271	0.92711641	2432	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	6	0						1											11.706	11.706	3	0.00033296	4265	DP690-6	98.368	73.246			1.042	1.1881	NaN	1	0	Median	16461000	7105300	9355400	8614	2432	8107	17097	41862;41863;41864;41865	41864		4	9606
LITWSPVCR	0	1	Unmodified	1130.5906	0.59064948	401	P07203	GPX1	Glutathione peroxidase 1	yes	yes	0	0	0	7	0							1										17.046	17.046	2	0.019758	10886	DP690-7	79.713	79.713			0.86852	1.0089	NaN	1	0	Median	12369000	7298800	5069900	8615	401	8108	17098	41866	41866		1	9606
LIVAYVDDLDRR	0	2	Unmodified	1446.7831	0.78307794	113	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	1	10	0										1							17.046	17.046	3	0.021615	12513	DP690-10	56.043	35.004			1.0964	1.3059	NaN	1	0	Median	104200000	62628000	41573000	8616	113	8109	17099	41867;41868	41867		2	9606
LIVDEAINEDNSVVSLSQPK	1	0	Unmodified	2169.1165	0.11649291	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	3	0			1														19.267	19.267	2	0.0094248	14219	DP690-3	95.822	48.633			NaN	NaN	NaN	0	0	Median	2776300	0	2776300	8617	893	8110	17100	41869;41870	41869		2	9606
LIVENLSSR	0	1	Unmodified	1029.5819	0.58185893	1193	Q13243;Q08170	SRSF5;SRSF4	Serine/arginine-rich splicing factor 5;Serine/arginine-rich splicing factor 4	no	no	0	0	0	9	0									1								14.771	14.771	2	0.040705	8198	DP690-9	101.6	45.167			NaN	NaN	NaN	0	0	Median	0	0	0	8618	1193	8111	17101	41871	41871		1	9606
LIVNVNDLR	0	1	Unmodified	1054.6135	0.61349341	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	8.17	3.39			1	1					1		3						17.241	17.241	2	1.5279E-05	12610	DP690-11	184.49	99.751			0.90779	1.0265	8.3553	2	0	Median	768680000	417830000	350850000	8619	581	8112	17102;17103;17104;17105;17106;17107	41872;41873;41874;41875;41876;41877;41878;41879;41880;41881;41882;41883	41876		12	9606
LIVNVNDLRR	0	2	Unmodified	1210.7146	0.71460444	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	7	4			1								1						15.159	15.159	3	4.619E-05	9607	DP690-11	133.57	114.62			0.79113	0.89339	28.263	2	0	Median	172490000	92408000	80084000	8620	581	8113	17108;17109	41884;41885;41886;41887;41888;41889	41887		6	9606
LIVTQTMK	1	0	Unmodified	932.53649	0.53648865	36	CON__P02754			yes	yes	0	0	0	3.67	3.09	1	1						1									13.19	13.19	2	0.00014273	5584	DP690-2	153.73	88.054		+	NaN	NaN	NaN	0	0	Median	39614000	39614000	0	8621	36	8114	17110;17111;17112	41890;41891;41892;41893;41894;41895	41893		6	
LIVTQTMK	1	0	Oxidation (M)	948.5314	0.53140327	36	CON__P02754			yes	yes	0	1	0	2.5	0.5		1	1														10.877	10.877	2	0.0019109	3038	DP690-2	134.06	60.082		+	NaN	NaN	NaN	0	0	Median	116480000	116480000	0	8622	36	8114	17113;17114	41896;41897;41898;41899	41897	36	4	
LIYPVGFWR	0	1	Unmodified	1149.6335	0.63350057	1047	P78549	NTHL1	Endonuclease III-like protein 1	yes	yes	0	0	0	14	0														1			20.563	20.563	2	0.038967	16365	DP690-14	70.912	49.385			0.76695	0.94085	NaN	1	0	Median	15060000	8376700	6682800	8623	1047	8115	17115	41900;41901	41901		2	9606
LIYTAGGYFR	0	1	Unmodified	1159.6026	0.60259438	1249	Q14145	KEAP1	Kelch-like ECH-associated protein 1	yes	yes	0	0	0	4	0				1													17.179	17.179	2	0.015664	11421	DP690-4	75.738	50.164			0.73212	0.84883	NaN	1	0	Median	5570700	3349300	2221400	8624	1249	8116	17116	41902	41902		1	9606
LKAEAELLQQQK	2	0	Unmodified	1397.7878	0.78782897	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	8	3.03		1							2	2							13.053	13.053	2;3	6.9579E-09	5898	DP690-9	236.69	128.26			0.83295	0.99246	17.133	5	0	Median	674760000	372060000	302700000	8625	1319	8117	17117;17118;17119;17120;17121	41903;41904;41905;41906;41907;41908;41909;41910;41911;41912;41913;41914;41915;41916;41917;41918	41915		16	9606
LKDEDDEDDCFILEK	2	0	Unmodified	1882.8142	0.81423923	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							15.925	15.925	2	0.016293	10922	DP690-10	146.96	101.53			NaN	NaN	NaN	0	0	Median	8090300	8090300	0	8626	13	8118	17122	41919	41919		1	9606
LKDIFLFITR	1	1	Unmodified	1264.7543	0.75434399	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	1	10	0										1							19.735	19.735	3	0.061991	16422	DP690-10	49.31	26.392			0.92699	1.1645	NaN	1	0	Median	44793000	22450000	22343000	8627	1377	8119	17123	41920;41921	41920		2	9606
LKDLEALLNSK	2	0	Unmodified	1242.7184	0.71835242	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	11.6	0.49											2	3					17.204	17.204	2;3	3.3723E-05	12571	DP690-11	130.44	69.223			0.77862	0.88577	4.4228	3	0	Median	480180000	240710000	239470000	8628	359	8120	17124;17125;17126;17127;17128	41922;41923;41924;41925;41926;41927;41928;41929;41930;41931;41932;41933;41934;41935	41923		14	9606
LKDLFNVDAFKLESLEAK	3	0	Unmodified	2079.1252	0.1252071	114	O14777	NDC80	Kinetochore protein NDC80 homolog	yes	yes	0	0	2	11	0											1						19.617	19.617	4	0.0023783	16083	DP690-11	80.596	48.089			0.61793	0.66932	NaN	1	0	Median	33574000	20766000	12808000	8629	114	8121	17129	41936	41936		1	9606
LKDSVYIFR	1	1	Unmodified	1139.6339	0.63389451	2503	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	1	12	0												1					15.068	15.068	3	0.073901	9136	DP690-12	65.305	44.005			NaN	NaN	NaN	0	0	Median	4992100	4992100	0	8630	2503	8122	17130	41937	41937		1	9606
LKDVLLQVDDERR	1	2	Unmodified	1597.8788	0.87876924	668	P35579	MYH9	Myosin-9	yes	yes	0	0	2	2	0		1															14.018	14.018	3	0.0012734	6568	DP690-2	91.202	54.918			1.0516	1.0693	NaN	1	0	Median	36143000	18462000	17681000	8631	668	8123	17131	41938;41939	41938		2	9606
LKDYAFIHFDER	1	1	Unmodified	1552.7674	0.76742787	207	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	1	12	0												1					16.031	16.031	3	0.017089	10452	DP690-12	62.891	35.793			0.74307	0.92723	NaN	1	0	Median	45373000	22454000	22919000	8632	207	8124	17132	41940	41940		1	9606
LKDYAFVHFEDR	1	1	Unmodified	1538.7518	0.75177781	176	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	1	12	0												2					15.218	15.218	3	0.025654	9322	DP690-12	77.74	45.486			NaN	NaN	NaN	0	0	Median	0	0	0	8633	176	8125	17133;17134	41941;41942	41942		2	9606
LKEAELLEPLMPAIR	1	1	Unmodified	1721.975	0.97497781	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	11	0											1						19.79	19.79	3	0.00031051	16267	DP690-11	102.15	74.122			0.66427	0.79758	NaN	1	0	Median	68356000	42415000	25940000	8634	877	8126	17135	41943;41944;41945	41943		3	9606
LKEAELLEPLMPAIR	1	1	Oxidation (M)	1737.9699	0.96989243	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	1	3	0			1														17.895	17.895	3	0.021521	12505	DP690-3	55.815	31.984			1.1783	1.3068	NaN	1	0	Median	19770000	8112300	11657000	8635	877	8126	17136	41946;41947	41946	1327	2	9606
LKEALQPLINR	1	1	Unmodified	1293.7769	0.77687035	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	1	10	0										1							14.159	14.159	3	0.049099	8266	DP690-10	51.727	40.272			0.76434	0.97375	NaN	1	0	Median	64457000	39430000	25027000	8636	1901	8127	17137	41948;41949	41948		2	9606
LKEDKAPQVDVDK	3	0	Unmodified	1483.7882	0.7882229	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	2	3	0			1														10.499	10.499	3	0.0021113	2763	DP690-3	149.57	98.106			NaN	NaN	NaN	0	0	Median	0	0	0	8637	720	8128	17138	41950	41950		1	9606
LKEELEEAR	1	1	Unmodified	1115.5823	0.58225287	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	no	0	0	1	10	0										1							10.819	10.819	3	0.021061	3440	DP690-10	91.584	49.248			NaN	NaN	NaN	0	0	Median	9377700	0	9377700	8638	1111	8129	17139	41951	41951		1	9606
LKEEYQSLIR	1	1	Unmodified	1277.698	0.69795133	2466	Q9Y3C8	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	yes	yes	0	0	1	15.5	0.5															1	1	14.067	14.067	3	0.0027555	7517	DP690-15	88.056	64.83			0.95272	1.0565	5.195	2	0	Median	102210000	51366000	50845000	8639	2466	8130	17140;17141	41952;41953;41954;41955	41953		4	9606
LKEFLALASSSLLK	2	0	Unmodified	1518.9021	0.90213044	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	1	7	4			1								1						19.607	19.607	3	0.010258	16052	DP690-11	66.674	60.663			0.95519	1.1267	NaN	1	0	Median	50257000	29123000	21134000	8640	2437	8131	17142;17143	41956;41957;41958	41956		3	9606
LKEGDTIIVPGVEGPIVTQIR	1	1	Unmodified	2233.2682	0.26818294	228	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	1	10	0										1							19.12	19.12	3	0.0044726	15541	DP690-10	59.212	59.212			0.69178	0.84763	NaN	1	0	Median	114780000	63701000	51078000	8641	228	8132	17144	41959	41959		1	9606
LKEIVTNFLAGFEA	1	0	Unmodified	1550.8344	0.83444481	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	13	0													1				22.61	22.61	2	0.00026752	18628	DP690-13	124.42	104.14			0.80239	0.93364	NaN	1	0	Median	26161000	14006000	12154000	8642	585	8133	17145	41960;41961;41962;41963	41961		4	9606
LKEIYENMAPGENKR	2	1	Oxidation (M)	1806.8934	0.89343302	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	1	2	3	0			1														10.574	10.574	3	0.056241	2865	DP690-3	63.212	39.381			NaN	NaN	NaN	0	0	Median	0	0	0	8643	1190	8134	17146	41964	41964		1	9606
LKELIFEETAR	1	1	Unmodified	1347.7398	0.73981614	610	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	1	6	0						1											15.463	15.463	3	0.00021108	8725	DP690-6	106.26	86.981			0.89855	1.007	NaN	1	0	Median	42979000	21982000	20996000	8644	610	8135	17147	41965;41966;41967	41965		3	9606
LKEQGQAPITPQQGQALAK	2	0	Unmodified	2005.0956	0.095638305	1062	P84095	RHOG	Rho-related GTP-binding protein RhoG	yes	yes	0	0	1	16	0																1	12.686	12.686	3	7.1005E-05	5544	DP690-16	112.57	112.57			0.69993	0.79765	NaN	1	0	Median	17826000	9752000	8073800	8645	1062	8136	17148	41968;41969;41970;41971	41969		4	9606
LKEQSIFGDHRDEEEETHMK	2	1	Unmodified	2457.1231	0.12305162	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	2	11	0											1						12.416	12.416	4	0.0076753	5575	DP690-11	68.243	45.216			0.7576	0.91647	NaN	1	0	Median	232620000	128580000	104040000	8646	1365	8137	17149	41972;41973;41974	41972		3	9606
LKETIDNNSVSSPLQSLQQR	1	1	Unmodified	2256.171	0.17098809	920	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	1	13	0													1				16.111	16.111	3	0.023745	10405	DP690-13	50.87	28.873			0.97707	1.1194	NaN	1	0	Median	81456000	36929000	44527000	8647	920	8138	17150	41975;41976	41976		2	9606
LKETYEALLAR	1	1	Unmodified	1305.7293	0.72925145	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	1	3	0			1														15.348	15.348	3	0.068654	9093	DP690-3	37.18	13.431			1.0922	1.2114	NaN	1	0	Median	10165000	3355600	6809400	8648	317	8139	17151	41977	41977		1	9606
LKEVFSMAGVVVR	1	1	Unmodified	1433.8065	0.80645592	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	11	0											1						17.324	17.324	3	0.0054266	12800	DP690-11	73.415	54.138			0.95984	1.1261	NaN	1	0	Median	95178000	48053000	47125000	8649	849	8140	17152	41978;41979;41980	41980		3	9606
LKGEATVSFDDPPSAK	2	0	Unmodified	1660.8308	0.83081599	672	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	12	0												1					13.449	13.449	3	0.007232	6832	DP690-12	66.201	31.101			0.75268	0.85256	NaN	1	0	Median	101740000	59114000	42622000	8650	672	8141	17153	41981;41982	41982		2	9606
LKGELESSDQVR	1	1	Unmodified	1359.6994	0.69940789	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	1	11	0											1						10.809	10.809	3	0.067895	3330	DP690-11	74.237	34.222			NaN	NaN	NaN	0	0	Median	33091000	0	33091000	8651	2303	8142	17154	41983	41983		1	9606
LKGPQITGPSLEGDLGLK	2	0	Unmodified	1822.02	0.020013746	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9.5	0.5									1	1							17.743	17.743	3	0.00022151	12014	DP690-9	100.27	79.012			0.66941	0.78237	3.2831	2	0	Median	233470000	137900000	95572000	8652	1145	8143	17155;17156	41984;41985;41986;41987;41988	41987		5	9606
LKIDFGEAAR	1	1	Unmodified	1118.6084	0.60840804	426	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	1	14	0														1			14.902	14.902	3	0.021221	8773	DP690-14	81.017	38.152			NaN	NaN	NaN	0	0	Median	0	0	0	8653	426	8144	17157	41989	41989		1	9606
LKKPILLEGSPGVGK	3	0	Unmodified	1534.9447	0.94466396	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	2	9	0									1								12.946	12.946	3	0.013324	5849	DP690-9	63.682	57.383			0.94322	1.0351	NaN	1	0	Median	12126000	6046600	6079700	8654	2217	8145	17158	41990;41991	41991		2	9606
LKLDSEQLPLRPK	2	1	Unmodified	1535.9035	0.90352742	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	2	11	0											1						14.265	14.265	3	3.7484E-05	8291	DP690-11	133.98	124.46			0.67977	0.82232	NaN	1	0	Median	185050000	108740000	76313000	8655	2501	8146	17159	41992;41993	41993		2	9606
LKLEDFFAR	1	1	Unmodified	1137.6182	0.61824444	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	1	4	0				2													19.026	19.026	2;3	0.00034577	13527	DP690-4	128.27	81.879			0.86047	0.98139	6.1711	2	0	Median	153670000	83312000	70362000	8656	469	8147	17160;17161	41994;41995;41996;41997;41998;41999	41997		6	9606
LKLEQIDGHIAEHNSK	2	0	Unmodified	1830.9588	0.95881047	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	1	10	0										1							12.514	12.514	4	0.0081337	5909	DP690-10	60.246	40.552			1.0414	1.2102	NaN	1	0	Median	204310000	94856000	109450000	8657	2215	8148	17162	42000;42001;42002	42000		3	9606
LKLSEELSGGR	1	1	Unmodified	1187.651	0.65100113	940	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	1	13	0													1				13.694	13.694	3	0.0090548	6915	DP690-13	92.943	55.435			NaN	NaN	NaN	0	0	Median	0	0	0	8658	940	8149	17163	42003	42003		1	9606
LKNDIEEQETLLGTIMPEEESAK	2	0	Oxidation (M)	2632.2789	0.27894314	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	1	1	10	0										1							18.085	18.085	3	0.0004262	13992	DP690-10	88.684	62.163			0.70068	0.8855	NaN	1	0	Median	68221000	39444000	28777000	8659	1794	8150	17164	42004;42005;42006	42005	2366	3	9606
LKNEIPNSHILDQYR	1	1	Unmodified	1838.9639	0.96389585	666	P35520	CBS	Cystathionine beta-synthase	yes	yes	0	0	1	4	0				2													14.933	14.933	3;4	5.4089E-06	8431	DP690-4	127.18	87.214			0.73347	0.83654	8.5884	2	0	Median	173820000	98854000	74966000	8660	666	8151	17165;17166	42007;42008;42009;42010;42011;42012	42010		6	9606
LKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEK	3	0	2 Oxidation (M)	3603.8205	0.82045759	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	2	2	13	0													1				19.034	19.034	4	0.031634	14273	DP690-13	48.78	26.343			NaN	NaN	NaN	0	0	Median	10367000	0	10367000	8661	894	8152	17167	42013	42013	1372;1373	1	9606
LKPEDITQIQPQQLVLR	1	1	Unmodified	2018.1524	0.1524249	387	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	1	3	0			2														18.807	18.807	3	1.6325E-05	13598	DP690-3	122.96	92.422			NaN	NaN	NaN	0	0	Median	28625000	18479000	10147000	8662	387	8153	17168;17169	42014;42015;42016	42015		3	9606
LKPGAPLRPK	2	1	Unmodified	1075.6866	0.68659878	549	P21333	FLNA	Filamin-A	yes	yes	0	0	2	10	0										1							10.289	10.289	3	0.063036	2693	DP690-10	52.579	25.789			0.65096	0.74282	NaN	1	0	Median	52610000	30440000	22170000	8663	549	8154	17170	42017;42018	42018		2	9606
LKPGGVGAPSSSSPSPSPSAR	1	1	Unmodified	1921.9858	0.9857535	1791	Q92797	SYMPK	Symplekin	yes	yes	0	0	1	10	0										1							11.107	11.107	3	8.721E-07	3858	DP690-10	111.45	92.623			0.52962	0.66506	NaN	1	0	Median	44388000	30452000	13936000	8664	1791	8155	17171	42019;42020	42019		2	9606
LKPPPQASFTSNAFR	1	1	Unmodified	1659.8733	0.87328993	2018	Q9BVC5	C2orf49	Ashwin	yes	yes	0	0	1	15	0															1		14.984	14.984	3	4.9776E-06	8731	DP690-15	129.17	95.942			0.36451	0.42091	NaN	1	0	Median	28555000	22355000	6199300	8665	2018	8156	17172	42021;42022	42022		2	9606
LKPPVHYNGPSK	2	0	Unmodified	1335.7299	0.72992016	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	11.2	1.6									1		3			1			10.487	10.487	3	2.4153E-05	2692	DP690-9	147.58	107.56			0.65146	0.7284	6.9536	2	0	Median	699390000	315190000	384200000	8666	897	8157	17173;17174;17175;17176;17177	42023;42024;42025;42026;42027;42028;42029;42030;42031	42028		9	9606
LKPQYLEELPGQLK	2	0	Unmodified	1654.9294	0.92940782	546	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	1	7	0							1										16.825	16.825	3	0.00043024	10558	DP690-7	99.834	73.856			0.73012	0.78062	NaN	1	0	Median	30436000	13805000	16630000	8667	546	8158	17178	42032;42033	42033		2	9606
LKPTDVGLLAVIANNIITINK	2	0	Unmodified	2219.3253	0.32530389	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	1	11	0											2						24.698	24.698	3	0.00023089	22539	DP690-11	98.3	98.3			0.6406	0.77165	NaN	1	0	Median	21312000	9798400	11513000	8668	288	8159	17179;17180	42034;42035;42036;42037;42038;42039	42035		6	9606
LKPYVSYLAPESEETPLTAAQLFSEAVAPAIEK	2	0	Unmodified	3561.8494	0.84943275	1616	Q8IXM3	MRPL41	39S ribosomal protein L41, mitochondrial	yes	yes	0	0	1	16	0																2	23.691	23.691	3	1.8797E-09	18676	DP690-16	124.61	112.55			0.60732	0.68161	NaN	1	0	Median	2323800	1706700	617170	8669	1616	8160	17181;17182	42040;42041;42042;42043	42042		4	9606
LKQQSELQSQVR	1	1	Unmodified	1442.7841	0.78414057	1298	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	1	6	0						1											10.544	10.544	3	0.00014266	2973	DP690-6	116.71	88.66			1.2383	1.3877	NaN	1	0	Median	9213700	4313000	4900700	8670	1298	8161	17183	42044;42045	42045		2	9606
LKQSLPPGLAVK	2	0	Unmodified	1249.7758	0.77580772	1018	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	1	16	0																1	13.553	13.553	2	0.014539	6602	DP690-16	91.636	50.21			0.80467	0.91434	NaN	1	0	Median	22211000	12478000	9733500	8671	1018	8162	17184	42046;42047	42047		2	9606
LKSEDGVEGDLGETQSR	1	1	Unmodified	1818.8595	0.85954994	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9.4	0.49									3	2							12.718	12.718	2;3	1.0494E-12	6210	DP690-10	255.39	205.93			0.87297	0.99531	10.456	3	0	Median	430000000	232750000	197250000	8672	1145	8163	17185;17186;17187;17188;17189	42048;42049;42050;42051;42052;42053;42054;42055;42056;42057;42058;42059;42060;42061;42062	42052		15	9606
LKSELVANNVTLPAGEQR	1	1	Unmodified	1938.0534	0.053439139	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	1	13	0													1				14.738	14.738	3	0.0072112	8433	DP690-13	98.882	55.192			NaN	NaN	NaN	0	0	Median	28375000	28375000	0	8673	723	8164	17190	42063;42064	42063		2	9606
LKSTCIYGGAPK	2	0	Unmodified	1293.6751	0.67510739	517;1793	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	1	12	0												1					11.098	11.098	3	0.046115	3731	DP690-12	45.357	30.415			0.80888	0.94171	NaN	1	0	Median	30982000	16866000	14116000	8674	1793;517	8165	17191	42065	42065		1	9606
LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK	2	0	Unmodified	3221.3743	0.37428537	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	1	11	1.41									1			2					10.266	10.266	4;5	1.8369E-12	2548	DP690-12	106.84	102.15			0.65846	0.72347	7.9303	3	0	Plateau	478500000	274220000	204280000	8675	494	8166	17192;17193;17194	42066;42067;42068;42069;42070;42071;42072;42073	42068		8	9606
LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR	2	1	Unmodified	4278.9775	0.97754845	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	2	12	0												2					11.64	11.64	6;7	0.00015486	4389	DP690-12	51.587	47.226			0.61714	0.68109	27.676	2	0	Median	309170000	193400000	115770000	8676	494	8167	17195;17196	42074;42075;42076;42077	42077		4	9606
LKTDVDVSLPK	2	0	Unmodified	1213.6918	0.69180331	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9.5	0.5									1	1							14.284	14.284	2	0.0024717	8486	DP690-10	109.79	63.4			0.71706	0.87007	9.8796	2	0	Median	103670000	56861000	46810000	8677	1145	8168	17197;17198	42078;42079;42080;42081	42079		4	9606
LKTEAEIALK	2	0	Unmodified	1114.6598	0.6597749	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.33	0.471									2	1							12.543	12.543	2;3	0.0007351	5937	DP690-10	128.86	64.593			1.082	1.2675	8.3805	2	0	Median	209380000	96445000	112930000	8678	1319	8169	17199;17200;17201	42082;42083;42084;42085;42086;42087;42088	42083		7	9606
LKTEAEIALKEK	3	0	Unmodified	1371.7973	0.79733102	1319	Q15149	PLEC	Plectin	yes	yes	0	0	2	9	0									1								11.315	11.315	3	0.00020251	3691	DP690-9	115.37	88.403			0.78123	0.85736	NaN	1	0	Median	12293000	6833800	5459100	8679	1319	8170	17202	42089;42090;42091;42092	42090		4	9606
LKTEEGEIDYSAEEGENRR	1	2	Unmodified	2224.0244	0.024383435	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	2	12	0												2					12.643	12.643	3;4	5.5883E-10	5634	DP690-12	152.94	113.56			0.78819	0.86879	10.198	2	0	Median	348580000	210590000	137980000	8680	1750	8171	17203;17204	42093;42094;42095;42096;42097	42096		5	9606
LKTEGSDLCDR	1	1	Unmodified	1292.6031	0.60306466	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	1	12	0												1					10.495	10.495	3	0.0038822	2872	DP690-12	101.71	60.603			NaN	NaN	NaN	0	0	Median	59279000	59279000	0	8681	375	8172	17205	42098	42098		1	9606
LKVDLTK	2	0	Unmodified	815.51165	0.5116541	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	1	11	0											1						11.557	11.557	2	0.072241	4369	DP690-11	87.754	21.951			0.90962	1.021	NaN	1	0	Median	199340000	102600000	96743000	8682	1950	8173	17206	42099	42099		0	9606
LKVEDALSYLDQVK	2	0	Unmodified	1619.877	0.8770379	1927	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	1	10	0										1							19.938	19.938	3	3.1285E-05	16593	DP690-10	144.88	108.3			0.53853	0.6826	NaN	1	0	Median	65620000	46959000	18661000	8683	1927	8174	17207	42100;42101	42100		2	9606
LKVPPAINQFTQALDR	1	1	Unmodified	1810.0101	0.010117761	984	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	7.33	5.31	1						1							1			19.381	19.381	3	2.4128E-06	13773	DP690-7	131.72	109.5			0.67384	0.779	19.571	3	0	Plateau	145380000	95105000	50276000	8684	984	8175	17208;17209;17210	42102;42103;42104;42105;42106;42107;42108;42109;42110	42107		9	9606
LKYALTGDEVKK	3	0	Unmodified	1363.7711	0.77111627	986	P62701;P22090;Q8TD47	RPS4X;RPS4Y1;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	2	15	0															1		11.485	11.485	3	0.023025	4138	DP690-15	55.899	32.083			0.91606	0.99789	NaN	1	0	Median	22752000	10876000	11876000	8685	986	8176	17211	42111	42111		1	9606
LKYENEVALR	1	1	Unmodified	1233.6717	0.67173657	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	6.58	4.99	2		2	2	1	1			1			1			1	1	13.224	13.224	2;3	1.763E-06	5844	DP690-5	164.66	123.94		+	NaN	NaN	NaN	0	0	Median	385700000	385700000	0	8686	42	8177	17212;17213;17214;17215;17216;17217;17218;17219;17220;17221;17222;17223	42112;42113;42114;42115;42116;42117;42118;42119;42120;42121;42122;42123;42124;42125;42126;42127;42128;42129;42130;42131;42132	42129		21	9606
LLAALLEDEGGSGRPLLQAAK	1	1	Unmodified	2121.1794	0.17936793	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	1	2	0		1															18.933	18.933	3	0.0031363	12385	DP690-2	65.287	41.959			1.1501	1.1322	NaN	1	0	Median	4480300	1986800	2493600	8687	2482	8178	17224	42133	42133		1	9606
LLAALLHSPQLVER	0	1	Unmodified	1558.9195	0.91951184	1463	Q69YL0	NCBP2-AS2	Uncharacterized protein NCBP2-AS2	yes	yes	0	0	0	16	0																1	17.905	17.905	3	5.8217E-06	12285	DP690-16	127.52	91.756			0.69803	0.81348	NaN	1	0	Median	8867800	5643100	3224700	8688	1463	8179	17225	42134;42135	42135		2	9606
LLACIASRPGQCGR	0	2	Unmodified	1557.7868	0.78679988	967	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	1	15	0															2		12.771	12.771	2;3	0.00012373	5716	DP690-15	111.5	71.75			0.96988	1.0521	8.0881	2	0	Median	131720000	65617000	66099000	8689	967	8180	17226;17227	42136;42137;42138;42139	42136		4	9606
LLADQAEAR	0	1	Unmodified	985.51926	0.51925868	1063	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	8	7	1														1		11.423	11.423	2	0.00031536	3903	DP690-15	159.2	61.595			0.95042	0.99872	0.29423	2	0	Median	69422000	36531000	32891000	8690	1063	8181	17228;17229	42140;42141;42142;42143;42144;42145;42146	42143		7	9606
LLAESVTEVEIFGK	1	0	Unmodified	1533.829	0.82902508	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								20.342	20.342	2	0.0055464	15236	DP690-9	113.22	62.773			NaN	NaN	NaN	0	0	Median	5318400	0	5318400	8691	1264	8182	17230	42147	42147		1	9606
LLAETVAPAVR	0	1	Unmodified	1138.671	0.67100829	1993	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	3	0			1														15.05	15.05	2	0.0054602	8700	DP690-3	87.308	35.453			1.0529	1.2065	NaN	1	0	Median	15153000	7274200	7878600	8692	1993	8183	17231	42148;42149	42148		2	9606
LLAHVTLELQHYHQLLEK	1	0	Unmodified	2184.2055	0.20552311	905	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														17.094	17.094	5	0.034291	11442	DP690-3	40.547	40.547			1.2746	1.3678	NaN	1	0	Median	15998000	8683600	7314500	8693	905	8184	17232	42150;42151	42150		2	9606
LLALLDALASHK	1	0	Unmodified	1263.7551	0.75507227	1465	Q69YN4	KIAA1429	Protein virilizer homolog	yes	yes	0	0	0	10	0										1							20.16	20.16	3	0.001976	16964	DP690-10	83.617	83.617			0.61921	0.75066	NaN	1	0	Median	12759000	8785500	3973000	8694	1465	8185	17233	42152;42153	42153		2	9606
LLALNSLYSPK	1	0	Unmodified	1217.702	0.70197407	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	8.2	3.12		1							1	3							18.563	18.563	2	0.00014111	12919	DP690-9	156.35	83.468			0.77791	0.86538	3.7338	3	0	Median	824910000	483710000	341200000	8695	1046	8186	17234;17235;17236;17237;17238	42154;42155;42156;42157;42158;42159;42160;42161;42162;42163;42164;42165;42166;42167;42168	42165		15	9606
LLANQQVFHISCFR	0	1	Unmodified	1731.8879	0.88789414	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	11.2	0.433											3	1					17.439	17.439	3	6.1815E-05	12790	DP690-11	161.25	131.76			1.0016	1.1342	8.3021	2	0	Median	487720000	237830000	249880000	8696	2340	8187	17239;17240;17241;17242	42169;42170;42171;42172;42173;42174;42175;42176	42171		8	9606
LLAPEAGSHPQQTQK	1	0	Unmodified	1603.8318	0.83181904	1702	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	4	0				1													10.412	10.412	3	0.0026993	2741	DP690-4	137.8	87.513			NaN	NaN	NaN	0	0	Median	10618000	10618000	0	8697	1702	8188	17243	42177;42178	42177		2	9606
LLAREEEESESSTSDDKR	1	2	Unmodified	2079.9556	0.95563517	1554	Q7Z6M4	MTERF4	Transcription termination factor 4, mitochondrial;mTERF domain-containing protein 2 processed	yes	yes	0	0	2	14	0														3			10.423	10.423	3;4	4.3428E-20	2731	DP690-14	207.05	159.83			0.8722	0.98846	NaN	1	0	Median	173240000	98116000	75128000	8698	1554	8189	17244;17245;17246	42179;42180;42181;42182;42183	42182		5	9606
LLASANLEEVTMK	1	0	Oxidation (M)	1433.7436	0.74358089	674	P35659	DEK	Protein DEK	yes	yes	0	1	0	14.5	1.5													1			1	16.308	16.308	2	0.0002614	10533	DP690-13	121.02	94.235			0.83484	0.96348	8.7951	2	0	Median	130260000	74801000	55456000	8699	674	8190	17247;17248	42184;42185;42186;42187;42188;42189	42185	977	6	9606
LLASQGSQGAPLLSTPK	1	0	Unmodified	1666.9254	0.92538508	1296	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	0	0	12	0												1					15.991	15.991	2	2.6687E-07	10458	DP690-12	149.69	149.69			0.55145	0.6629	NaN	1	0	Median	20681000	12069000	8612200	8700	1296	8191	17249	42190;42191	42191		2	9606
LLAVNNVCLEEVTHEEAVTALK	1	0	Unmodified	2451.2679	0.26792495	1173	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	11	0											1						19.458	19.458	3	0.07537	15883	DP690-11	66.644	28.626			NaN	NaN	NaN	0	0	Median	29013000	29013000	0	8701	1173	8192	17250	42192	42192		1	9606
LLCEHQFTIIVAELQK	1	0	Unmodified	1941.0394	0.039368979	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10.5	0.5										1	1						20.251	20.251	3	1.928E-09	17034	DP690-10	188	164.52			0.71202	0.87345	19.613	2	0	Median	145150000	88939000	56207000	8702	272	8193	17251;17252	42193;42194;42195;42196	42193		4	9606
LLCGLLAER	0	1	Unmodified	1043.5798	0.57975045	487	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	0	12	4								1								1	17.778	17.778	2	0.00012073	11084	DP690-8	186.09	106.15			0.79061	0.83597	3.9188	2	0	Median	396100000	218590000	177510000	8703	487	8194	17253;17254	42197;42198;42199;42200;42201;42202;42203;42204;42205	42203		9	9606
LLCVALGQLDRPPDLAHDGR	0	2	Unmodified	2215.1532	0.15316996	1810	Q969S8	HDAC10	Histone deacetylase 10	yes	yes	0	0	1	4	0				1													17.79	17.79	4	0.0025073	12103	DP690-4	66.977	54.885			0.59357	0.62193	NaN	1	0	Median	15961000	10746000	5214800	8704	1810	8195	17255	42206;42207	42206		2	9606
LLDAEDVDVPSPDEK	1	0	Unmodified	1640.7781	0.77811172	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								16.962	16.962	2	0.0043289	11039	DP690-9	118.87	78.85			NaN	NaN	NaN	0	0	Median	3213400	3213400	0	8705	2411	8196	17256	42208;42209	42208		2	9606
LLDAESEDRPK	1	1	Unmodified	1271.6357	0.635745	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	1	10	0.577									1	4	1						11.039	11.039	2;3	4.1361E-05	3318	DP690-9	132.25	91.256			0.69555	0.85819	6.3262	3	0	Median	298670000	255600000	43073000	8706	311	8197	17257;17258;17259;17260;17261;17262	42210;42211;42212;42213;42214;42215;42216;42217;42218;42219;42220;42221;42222;42223;42224	42223		15	9606
LLDAPGIVPGPNSEVGTILR	0	1	Unmodified	2017.1208	0.12079042	2236	Q9NVN8	GNL3L	Guanine nucleotide-binding protein-like 3-like protein	yes	yes	0	0	0	12	0												1					20.545	20.545	2	0.003469	16633	DP690-12	103.88	63.721			NaN	NaN	NaN	0	0	Median	1696200	0	1696200	8707	2236	8198	17263	42225	42225		1	9606
LLDAQLATGGIVDPR	0	1	Unmodified	1537.8464	0.84640648	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.816									1	1	1						18.438	18.438	2	6.4914E-10	12873	DP690-9	206.74	206.74			0.78081	0.91889	1.0131	2	0	Median	309990000	82546000	227440000	8708	1319	8199	17264;17265;17266	42226;42227;42228;42229;42230	42230		5	9606
LLDAQLSTGGIVDPSK	1	0	Unmodified	1612.8672	0.8672015	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	7	3.56		1							1	1							17.852	17.852	2	2.8704E-12	12138	DP690-9	229.97	180.69			0.80364	0.92403	2.8895	3	0	Median	370360000	206780000	163580000	8709	1319	8200	17267;17268;17269	42231;42232;42233;42234;42235;42236;42237;42238;42239;42240;42241	42239		10	9606
LLDAVDTYIPVPAR	0	1	Unmodified	1541.8453	0.84534384	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	13	0													1				19.927	19.927	2	1.6796E-06	15271	DP690-13	242.97	207.55			0.68044	0.82465	NaN	1	0	Median	58834000	33088000	25747000	8710	793	8201	17270	42242;42243;42244;42245;42246;42247	42243		6	9606
LLDDLFR	0	1	Unmodified	890.48617	0.48616764	2377	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	10.3	0.471										2	1						19.977	19.977	2	9.6933E-07	16542	DP690-11	166.13	71.457			NaN	NaN	NaN	0	0	Median	5975000	5975000	0	8711	2377	8202	17271;17272;17273	42248;42249;42250;42251	42251		4	9606
LLDDSEYTCTIQR	0	1	Unmodified	1612.7403	0.74028643	1553	Q7Z6J6	FRMD5	FERM domain-containing protein 5	yes	yes	0	0	0	12	0												1					15.985	15.985	2	0.00065288	10492	DP690-12	107.06	77.992			1.1332	1.3792	NaN	1	0	Median	11797000	5124800	6671700	8712	1553	8203	17274	42252	42252		1	9606
LLDDVSFHPCIR	0	1	Unmodified	1470.7289	0.72893388	2447	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	13	0													1				16.93	16.93	3	0.00011841	11418	DP690-13	127.51	96.366			0.75714	0.90498	NaN	1	0	Median	97344000	55833000	41511000	8713	2447	8204	17275	42253;42254;42255;42256	42255		4	9606
LLDEEEATDNDLR	0	1	Unmodified	1531.7002	0.70019575	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			2														15.347	15.347	2	1.0567E-10	9052	DP690-3	221.52	161.45			0.84036	0.93503	NaN	1	0	Median	39969000	22749000	17220000	8714	1739	8205	17276;17277	42257;42258;42259;42260;42261;42262	42258		6	9606
LLDEQEQEDEEASTGSHLK	1	0	Unmodified	2156.971	0.97095088	2157	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	10	0										2							13.557	13.557	3	6.2956E-05	7344	DP690-10	118.15	89.525			NaN	NaN	NaN	0	0	Median	63059000	33937000	29122000	8715	2157	8206	17278;17279	42263;42264	42263		2	9606
LLDFGSLSNLQVTQPTVGMNFK	1	0	Oxidation (M)	2424.2359	0.23589654	425	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	1	0	12	4								1								1	21.695	21.695	2	8.3808E-29	16559	DP690-16	214.89	214.89			0.8854	1.0073	9.4618	2	0	Median	72564000	38796000	33768000	8716	425	8207	17280;17281	42265;42266;42267;42268;42269;42270;42271;42272;42273;42274;42275;42276;42277	42271	491	13	9606
LLDGFFIRPFYK	1	1	Unmodified	1514.8286	0.82857157	1911;764	Q96PU5;P46934	NEDD4L;NEDD4	E3 ubiquitin-protein ligase NEDD4-like;E3 ubiquitin-protein ligase NEDD4	no	no	0	0	1	3	0			1														20.695	20.695	3	2.1413E-05	16000	DP690-3	128.81	93.288			0.84492	0.93708	NaN	1	0	Median	19976000	10780000	9196200	8717	1911;764	8208	17282	42278;42279;42280;42281	42280		4	9606
LLDILSYLR	0	1	Unmodified	1104.6543	0.6542956	136	O15091	KIAA0391	Mitochondrial ribonuclease P protein 3	yes	yes	0	0	0	12	0												1					23.192	23.192	2	0.001872	19705	DP690-12	116.37	59.194			0.88617	1.0792	NaN	1	0	Median	10111000	5163100	4947400	8718	136	8209	17283	42282;42283	42282		2	9606
LLDLELTSR	0	1	Unmodified	1058.5972	0.59717465	2442	Q9Y2Q9	MRPS28	28S ribosomal protein S28, mitochondrial	yes	yes	0	0	0	16	0																1	18.214	18.214	2	2.1236E-05	12612	DP690-16	178.3	117.51			0.87721	1.0114	NaN	1	0	Median	28048000	14612000	13436000	8719	2442	8210	17284	42284;42285;42286;42287	42284		4	9606
LLDLLEGLTGTSLPK	1	0	Unmodified	1568.9025	0.90252437	765	P46939	UTRN	Utrophin	yes	yes	0	0	0	10	0										1							23.242	23.242	2	0.0025717	20944	DP690-10	128.36	92.029			NaN	NaN	NaN	0	0	Median	3701500	3701500	0	8720	765	8211	17285	42288	42288		1	9606
LLDLVQQSCNYK	1	0	Unmodified	1479.7392	0.73916421	899	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	0	16	0																1	16.813	16.813	2	4.3051E-10	10838	DP690-16	234.2	195.63			0.88766	0.98727	NaN	1	0	Median	73408000	37544000	35864000	8721	899	8212	17286	42289;42290;42291;42292	42290		4	9606
LLDMDGIIVEK	1	0	Unmodified	1244.6686	0.66862503	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	10	0										1							19.535	19.535	2	0.00032457	16019	DP690-10	119.16	119.16			0.56542	0.69283	NaN	1	0	Median	30220000	19998000	10222000	8722	1252	8213	17287	42293;42294	42294		2	9606
LLDNLLALIR	0	1	Unmodified	1152.723	0.72304386	2158	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	8.33	3.77			1								2						23.775	23.775	2	0.00013238	21504	DP690-11	138.54	59.775			0.71957	0.87192	NaN	1	0	Median	4710600	2441800	2268800	8723	2158	8214	17288;17289;17290	42295;42296;42297;42298;42299;42300	42295		6	9606
LLDPEDISVDHPDEK	1	0	Unmodified	1720.8156	0.81555986	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							15.934	15.934	3	6.2339E-05	10893	DP690-10	118.52	95.042			0.55725	0.68376	NaN	1	0	Median	163050000	100110000	62939000	8724	1080	8215	17291	42301;42302;42303	42302		3	9606
LLDPEDVDVPQPDEK	1	0	Unmodified	1707.8203	0.82031089	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.4	1.02									1	2	1	1					17.285	17.285	2	1.6026E-09	11495	DP690-9	224.25	192.24			0.57083	0.65724	26.818	5	0	Median	855040000	549200000	305840000	8725	1319	8216	17292;17293;17294;17295;17296	42304;42305;42306;42307;42308;42309;42310;42311;42312;42313;42314;42315;42316;42317	42316		14	9606
LLDSVPPTAISHFK	1	0	Unmodified	1523.8348	0.83477916	2195	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	11	0											4						16.327	16.327	3	0.0058316	11345	DP690-11	93.649	43.189			NaN	NaN	NaN	0	0	Median	33087000	0	33087000	8726	2195	8217	17297;17298;17299;17300	42318;42319;42320;42321	42318		4	9606
LLDTMVDTFLQK	1	0	Oxidation (M)	1438.7378	0.73776723	1485	Q6P1K2	PMF1	Polyamine-modulated factor 1	yes	yes	0	1	0	15	0															1		18.784	18.784	2	0.0034039	13779	DP690-15	94.309	40.341			0.8273	0.97536	NaN	1	0	Median	11310000	7001600	4308000	8727	1485	8218	17301	42322;42323	42323	2171	2	9606
LLDTNPEINQSDSQDSR	0	1	Unmodified	1930.8868	0.88682732	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	2	0		1															14.342	14.342	2	3.5682E-10	6912	DP690-2	194.96	176.82			0.99416	1.0274	NaN	1	0	Median	4168900	2382300	1786600	8728	1282	8219	17302	42324;42325;42326;42327;42328	42326		5	9606
LLDVIHTENK	1	0	Unmodified	1180.6452	0.64518747	580	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	14	0														1			13.603	13.603	3	0.018268	6958	DP690-14	77.533	27.06			NaN	NaN	NaN	0	0	Median	0	0	0	8729	580	8220	17303	42329	42329		1	9606
LLEAAAQSTK	1	0	Unmodified	1030.5659	0.56587452	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.5	0.5										1	1						11.329	11.329	2	9.0072E-05	4245	DP690-10	155.07	43.121			0.84179	0.97675	4.8874	2	0	Median	531590000	285300000	246290000	8730	1319	8221	17304;17305	42330;42331;42332;42333;42334;42335;42336;42337;42338	42333		9	9606
LLEAQACTGGIIDPSTGER	0	1	Unmodified	1986.9681	0.96805453	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.67	0.471									1	2							16.742	16.742	2	2.2959E-22	10714	DP690-9	214.58	166.31			0.73237	0.91675	1.6009	2	0	Median	58939000	32395000	26544000	8731	1319	8222	17306;17307;17308	42339;42340;42341;42342;42343;42344;42345;42346;42347	42344		9	9606
LLEAQACTGGIIDPSTGERFPVTDAVNK	1	1	Unmodified	2958.4757	0.47568589	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							18.075	18.075	3	3.8725E-12	12448	DP690-9	153.25	131.2			0.62629	0.73801	0.70023	2	0	Median	195960000	92629000	103330000	8732	1319	8223	17309;17310	42348;42349;42350;42351;42352;42353;42354	42351		7	9606
LLEAQIATGGIIDPEESHR	0	1	Unmodified	2048.0538	0.05383307	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.816									1	1	1						17.58	17.58	3	9.0987E-08	11858	DP690-9	117.84	117.84			0.58228	0.7085	28.038	3	0	Plateau	245020000	136340000	108690000	8733	1319	8224	17311;17312;17313	42355;42356;42357;42358;42359;42360	42360		6	9606
LLEAQIATGGIIDPEESHRLPVEVAYK	1	1	Unmodified	2947.5655	0.56548717	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								18.67	18.67	4	3.0964E-05	13217	DP690-9	102.92	83.008			0.66099	0.76663	NaN	1	0	Median	65194000	36944000	28250000	8734	1319	8225	17314	42361;42362	42361		2	9606
LLEAQIATGGIIDPVHSHR	0	1	Unmodified	2026.096	0.095972656	1319	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	yes	no	0	0	0	10.2	1.07									2	2	1	1					16.468	16.468	3;4	2.8333E-07	11596	DP690-10	140.3	140.3			0.74722	0.85061	13.549	6	0	Median	1046499999.9999999	564990000	481550000	8735	1319	8226	17315;17316;17317;17318;17319;17320	42363;42364;42365;42366;42367;42368;42369;42370;42371;42372;42373;42374;42375;42376;42377;42378;42379;42380;42381	42363		19	9606
LLEAQIATGGVIDPVHSHR	0	1	Unmodified	2012.0803	0.080322592	1319	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	yes	no	0	0	0	9.8	0.748									2	2	1						15.761	15.761	3;4	8.1081E-11	9458	DP690-9	160.09	134.83			0.75779	0.91832	12.655	3	0	Median	706350000	443390000	262960000	8736	1319	8227	17321;17322;17323;17324;17325	42382;42383;42384;42385;42386;42387;42388;42389;42390	42387		9	9606
LLEDDFWADVSTLHVQK	1	0	Unmodified	2015	6.5850998E-06	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								21.099	21.099	3	0.0011644	16216	DP690-9	76.151	76.151			1.1382	1.4326	NaN	1	0	Median	6188600	3743100	2445500	8737	2217	8228	17326	42391;42392	42391		2	9606
LLEDFGDGGAFPEIHVAQYPLDMGR	0	1	Oxidation (M)	2762.301	0.30101599	1226	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	1	0	12	0												1					20.92	20.92	3	0.00095964	17032	DP690-12	69.272	56.343			0.69377	0.84412	NaN	1	0	Median	12612000	7680700	4931800	8738	1226	8229	17327	42393;42394;42395;42396	42394	1871	4	9606
LLEDGEDFNLGDALDSSNSMQTIQK	1	0	Oxidation (M)	2755.2494	0.24943393	388	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	1	0	13	0													3				20.243	20.243	2	3.2789E-11	15796	DP690-13	166.9	119.66			NaN	NaN	NaN	0	0	Median	5861800	0	5861800	8739	388	8230	17328;17329;17330	42397;42398;42399	42398	414	3	9606
LLEDMPQIFGEQVSR	0	1	Oxidation (M)	1776.8716	0.87163495	1969	Q9BQ13	KCTD14	BTB/POZ domain-containing protein KCTD14	yes	yes	0	1	0	15	0															1		18.224	18.224	2	0.0017562	13021	DP690-15	96.82	70.108			1.4256	1.65	NaN	1	0	Median	14917000	6938500	7978500	8740	1969	8231	17331	42400	42400	2517	1	9606
LLEEALLR	0	1	Unmodified	955.57023	0.57023162	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							17.387	17.387	2	0.04606	12900	DP690-10	120.65	48.412			0.80171	0.8805	4.0721	2	0	Median	723190000	403630000	319550000	8741	1046	8232	17332;17333	42401;42402	42401		0	9606
LLEEEIIAFSK	1	0	Unmodified	1290.7071	0.70711903	2296	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	13	0													1				20.305	20.305	2	7.7445E-05	15818	DP690-13	169.41	169.41			0.90842	1.0516	NaN	1	0	Median	45542000	23767000	21776000	8742	2296	8233	17334	42403;42404;42405;42406	42403		4	9606
LLEEENQESLR	0	1	Unmodified	1358.6678	0.66777341	781	P48681	NES	Nestin	yes	yes	0	0	0	5.75	3.77		2							1	1							13.811	13.811	2	2.3457E-06	7761	DP690-10	214.93	113.39			0.80725	0.93867	NaN	1	0	Median	302410000	163040000	139370000	8743	781	8234	17335;17336;17337;17338	42407;42408;42409;42410;42411;42412;42413	42410		7	9606
LLEELEEGQK	1	0	Unmodified	1186.6081	0.60813326	1201	Q15819;Q13404	UBE2V2;UBE2V1	Ubiquitin-conjugating enzyme E2 variant 2;Ubiquitin-conjugating enzyme E2 variant 1	yes	no	0	0	0	8	0								1									15.567	15.567	2	0.00089052	8747	DP690-8	109.48	77.949			1.3149	1.4976	NaN	1	0	Median	8266800	3689800	4576900	8744	1201	8235	17339	42414;42415	42414		2	9606
LLEENVSAFK	1	0	Unmodified	1148.6077	0.60773933	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	2.5	0.5		1	1														16.025	16.025	2	0.01305	10037	DP690-3	110.41	16.098			1.3823	1.3737	NaN	1	0	Median	3385100	1568000	1817100	8745	2215	8236	17340;17341	42416;42417	42417		2	9606
LLEEYGSDDTR	0	1	Unmodified	1296.5834	0.58337508	765	P46939	UTRN	Utrophin	yes	yes	0	0	0	10	0										1							13.951	13.951	2	0.051141	8040	DP690-10	61.65	38.579			1.2201	1.5234	NaN	1	0	Median	66930000	20510000	46420000	8746	765	8237	17342	42418	42418		1	9606
LLEFNQGK	1	0	Unmodified	947.50763	0.50763136	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3	0			1														14.431	14.431	2	0.045437	7885	DP690-3	132.09	37.832			0.9829	1.0124	NaN	1	0	Median	100060000	49424000	50634000	8747	720	8238	17343	42419	42419		0	9606
LLEGDGGPNTGGMGAYCPAPQVSNDLLLK	1	0	Oxidation (M)	2959.4056	0.40555741	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	1	0	3	0			1														19.288	19.288	2	1.4564000000000001E-34	14258	DP690-3	195.48	164.44			NaN	NaN	NaN	0	0	Median	4610600	4610600	0	8748	559	8239	17344	42420;42421	42421	725	2	9606
LLEGEDAHLSSQQASGQSYSSR	0	1	Unmodified	2349.0833	0.083295297	40	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	9.33	5.73		1								1						1	13.501	13.501	3	7.2901E-09	6561	DP690-16	154.6	121.86		+	NaN	NaN	NaN	0	0	Median	48820000	48820000	0	8749	40	8240	17345;17346;17347	42422;42423;42424;42425;42426;42427;42428	42425		7	9606
LLEGEDAHLSSSQFSSGSQSSR	0	1	Unmodified	2308.0567	0.056746196	29	CON__P02533;P02533;CON__Q61782	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	6.4	5.54	1	1		1					1							1	14.486	14.486	3	3.7353E-07	7864	DP690-16	137.39	87.134		+	NaN	NaN	NaN	0	0	Median	27059000	27059000	0	8750	29	8241	17348;17349;17350;17351;17352	42429;42430;42431;42432;42433;42434;42435;42436;42437	42432		9	9606
LLEGEDAHLTQYK	1	0	Unmodified	1515.7569	0.75692277	45	CON__Q04695;Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	13	0													2				14.155	14.155	2;3	0.0014834	7601	DP690-13	97.452	56.863		+	1.3512	1.5377	42.856	2	0	Median	204920000	125300000	79628000	8751	45	8242	17353;17354	42438;42439	42438		1	9606
LLELADIDPTLRPR	0	2	Unmodified	1620.9199	0.91990577	1748	Q8WVM0	TFB1M	Dimethyladenosine transferase 1, mitochondrial	yes	yes	0	0	1	14	0														1			19.057	19.057	3	2.0983E-05	14385	DP690-14	168.76	149.77			0.71548	0.84081	NaN	1	0	Median	53554000	30653000	22902000	8752	1748	8243	17355	42440;42441;42442;42443	42440		4	9606
LLELFPVNR	0	1	Unmodified	1099.639	0.63897988	2519	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	9	4					1								1				19.689	19.689	2	0.043409	13923	DP690-5	96.253	34.254			NaN	NaN	NaN	0	0	Median	10996000	10996000	0	8753	2519	8244	17356;17357	42444;42445	42445		2	9606
LLELGPKPEVAQQTR	1	1	Unmodified	1677.9414	0.94136949	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	1	6.5	3.5			1							1							14.319	14.319	3	6.5222E-06	7752	DP690-3	140.03	100.01			1.0957	1.2871	63.981	2	0	Median	136670000	67908000	68764000	8754	878	8245	17358;17359	42446;42447;42448	42448		3	9606
LLELQELVLR	0	1	Unmodified	1224.7442	0.74417324	1138	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	11	0											1						21.408	21.408	2	0.0084527	18591	DP690-11	112.84	55.664			NaN	NaN	NaN	0	0	Median	5916100	0	5916100	8755	1138	8246	17360	42449	42449		1	9606
LLELQSIGTNNFLR	0	1	Unmodified	1616.8886	0.88860564	308	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	11	0											1						20.67	20.67	2	3.8123E-05	17514	DP690-11	133.42	112.39			0.65867	0.80388	NaN	1	0	Median	17645000	11237000	6408200	8756	308	8247	17361	42450;42451	42450		2	9606
LLEMNLMHAPQVADAILGNQMFTHYDR	0	1	3 Oxidation (M)	3175.4889	0.48890989	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	3	0	2	0		1															19.005	19.005	4	0.0016059	12424	DP690-2	55.469	55.469			0.74426	0.77737	NaN	1	0	Median	5265600	2617800	2647800	8757	1075	8248	17362	42452;42453;42454;42455	42453	1677;1678;1679	4	9606
LLENPTINHQK	1	0	Unmodified	1305.7041	0.70409934	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	10	0										1							11.33	11.33	3	0.04465	4112	DP690-10	50.791	24.9			0.97238	1.1958	NaN	1	0	Median	48389000	24199000	24190000	8758	1311	8249	17363	42456	42456		1	9606
LLENSTLNSK	1	0	Unmodified	1117.5979	0.59790293	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	0	12	0												1					12.554	12.554	2	6.7022E-05	5546	DP690-12	166.52	100.09			0.78846	0.93022	NaN	1	0	Median	84437000	45213000	39224000	8759	2521	8250	17364	42457;42458	42457		2	9606
LLEPLVTQVTTLVNTNSK	1	0	Unmodified	1969.1096	0.10955703	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											1						22.006	22.006	2	4.1423E-31	19307	DP690-11	256.13	5.3177			0.80389	0.97263	NaN	1	0	Median	86074000	48349000	37725000	8760	657	8251	17365	42459;42460;42461;42462	42462		4	9606
LLEPSVGSLFGDDEDDDLFSSAK	1	0	Unmodified	2455.1278	0.12784545	1454	Q9Y4E1;Q641Q2	FAM21C;FAM21A	WASH complex subunit FAM21C;WASH complex subunit FAM21A	yes	no	0	0	0	10	0										1							23.089	23.089	2	1.4184E-06	20839	DP690-10	140.22	140.22			0.67537	0.81867	NaN	1	0	Median	9174600	5354200	3820400	8761	1454	8252	17366	42463;42464;42465;42466	42463		4	9606
LLEPVLLLGK	1	0	Unmodified	1093.7111	0.71108219	969	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	12	3.54								1	1						1	1	20.778	20.778	2	9.2897E-05	15398	DP690-16	161.02	115.34			0.88216	0.98962	6.1256	3	0	Median	523830000	276700000	247120000	8762	969	8253	17367;17368;17369;17370	42467;42468;42469;42470;42471;42472;42473;42474;42475;42476;42477;42478;42479;42480;42481	42471		15	9606
LLEQALVIEEQLRR	0	2	Unmodified	1708.9836	0.98356866	1297	Q14839;Q8TDI0;Q12873	CHD4;CHD5;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3	yes	no	0	0	1	10	0										1							19.362	19.362	3	2.2908E-05	15832	DP690-10	151.26	134.51			NaN	NaN	NaN	0	0	Median	86465000	47188000	39278000	8763	1297	8254	17371	42482;42483	42483		2	9606
LLEQYKEESK	2	0	Unmodified	1265.6503	0.65033243	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	8.6	2.94			1						2		2						11.294	11.294	2;3	5.4604E-05	3595	DP690-9	137.95	104.19			0.968	1.15	5.0624	4	0	Median	262390000	140260000	122130000	8764	1078	8255	17372;17373;17374;17375;17376	42484;42485;42486;42487;42488;42489;42490;42491;42492;42493;42494;42495	42492		11	9606
LLEQYKEESKK	3	0	Unmodified	1393.7453	0.74529545	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	7	4			1								1						10.453	10.453	3	1.1549E-05	2760	DP690-11	188.91	140.72			0.78298	0.8481	NaN	1	0	Median	1030899999.9999999	562450000	468420000	8765	1078	8256	17377;17378	42496;42497;42498;42499	42496		4	9606
LLESLDQLELR	0	1	Unmodified	1327.7347	0.73473076	341	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	13	3.46							1								3		19.893	19.893	2	1.8094E-20	15043	DP690-15	244.8	66.249			1.0376	1.1982	14.787	2	0	Median	46672000	23354000	23318000	8766	341	8257	17379;17380;17381;17382	42500;42501;42502;42503;42504;42505	42503		6	9606
LLESPGVEAGEGEAEKEEAGAQGR	1	1	Unmodified	2412.1405	0.14047583	1480	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	1	11	0											1						14.979	14.979	3	4.0596E-10	9401	DP690-11	148.01	125.96			0.73423	0.89783	NaN	1	0	Median	52634000	27615000	25019000	8767	1480	8258	17383	42506;42507;42508;42509	42507		4	9606
LLETCSIALVGK	1	0	Unmodified	1302.7217	0.72172323	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	4	0				1													17.379	17.379	2	8.9202E-05	11605	DP690-4	142.43	79.001			0.87207	0.92228	NaN	1	0	Median	80490000	43093000	37396000	8768	516	8259	17384	42510;42511;42512;42513	42512		4	9606
LLETELLQEISEIEKR	1	1	Unmodified	1942.0623	0.062272491	1720	Q8TDB6	DTX3L	E3 ubiquitin-protein ligase DTX3L	yes	yes	0	0	1	11	0											1						22.275	22.275	3	1.5838E-09	19628	DP690-11	188.12	167.47			0.8594	1.0704	NaN	1	0	Median	26497000	13063000	13434000	8769	1720	8260	17385	42514;42515;42516;42517	42516		4	9606
LLETESFQMNR	0	1	Oxidation (M)	1382.65	0.65001485	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	0		1															14.554	14.554	2	0.019564	7231	DP690-2	96.034	48.165			NaN	NaN	NaN	0	0	Median	4093600	4093600	0	8770	1179	8261	17386	42518	42518	1824	1	9606
LLETIDQLYLEYAK	1	0	Unmodified	1710.908	0.90800368	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	8.33	3.77			1								2						22.763	22.763	2	3.3237E-15	20188	DP690-11	258.01	232.09			0.77487	0.94451	12.989	2	0	Median	66870000	34879000	31991000	8771	476	8262	17387;17388;17389	42519;42520;42521;42522;42523;42524;42525;42526;42527	42520		9	9606
LLETLFVHR	0	1	Unmodified	1126.6499	0.64987892	2269	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	11.2	2.28									1	1	1				1		17.15	17.15	3	0.00029206	12628	DP690-10	128.61	77.548			0.59474	0.74224	41.672	3	0	Median	25474000	14379000	11095000	8772	2269	8263	17390;17391;17392;17393	42528;42529;42530;42531;42532;42533;42534;42535;42536;42537;42538;42539;42540	42528		13	9606
LLETLSQMER	0	1	Oxidation (M)	1234.6227	0.62273747	2392	Q9ULQ1	TPCN1	Two pore calcium channel protein 1	yes	yes	0	1	0	2	0		1															18.551	18.551	2	0.0075098	11903	DP690-2	91.318	11.844			1.0009	1.0293	NaN	1	0	Median	3746900	1493200	2253700	8773	2392	8264	17394	42541	42541	2823	1	9606
LLETTDRPDGHQNNLR	0	2	Unmodified	1877.9344	0.93438664	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	7	4			1								1						11.143	11.143	4	0.0005782	3882	DP690-11	88.282	73.26			0.92494	1.0445	17.24	2	0	Median	214250000	112000000	102240000	8774	1300	8265	17395;17396	42542;42543;42544;42545;42546;42547	42542		6	9606
LLEVEHPAAK	1	0	Unmodified	1105.6132	0.61315906	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	6	3.46				3								1					11.076	11.076	3	0.002155	3548	DP690-4	112.11	70.681			NaN	NaN	NaN	0	0	Median	479770	0	479770	8775	520	8266	17397;17398;17399;17400	42548;42549;42550;42551;42552	42551		5	9606
LLEVNGVALQGAEHHEAVEALR	0	1	Unmodified	2354.2343	0.23425705	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							16.391	16.391	4	5.5591E-05	11551	DP690-10	115.76	98.257			0.78662	0.92628	NaN	1	0	Median	256680000	138530000	118150000	8776	1254	8267	17401	42553;42554	42553		2	9606
LLEVNQQSLLGLTHGEAVQLLR	0	1	Unmodified	2430.3595	0.35945756	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10.5	0.5										1	1						21.227	21.227	3	0.00014985	18534	DP690-10	131.54	97.391			1.0058	1.2175	NaN	1	0	Median	21339000	11192000	10148000	8777	1254	8268	17402;17403	42555;42556	42555		2	9606
LLEVPVMLTEQYPQGLGPTVPELGTEGLRPLAK	1	1	Oxidation (M)	3560.9164	0.91640688	1817	Q96AB3	ISOC2	Isochorismatase domain-containing protein 2, mitochondrial	yes	yes	0	1	1	7.5	0.5							1	1									21.574	21.574	3	8.5594E-08	15342	DP690-8	90.616	85.1			0.38236	0.42328	8.315	2	0	Median	7727500	5331300	2396200	8778	1817	8269	17404;17405	42557;42558;42559;42560;42561;42562	42560	2400	6	9606
LLEVQGSRPGK	1	1	Unmodified	1182.6721	0.67207093	963	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	1	8.67	3.77						2								1			10.7	10.7	2;3	0.00010275	3081	DP690-14	121.36	61.994			4.5721	5.4297	161.22	3	0	Plateau	63310000	14837000	48473000	8779	963	8270	17406;17407;17408	42563;42564;42565;42566;42567	42565		5	9606
LLEVVQPCLQAAK	1	0	Unmodified	1467.8119	0.81193523	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															17.197	17.197	2	0.057204	10415	DP690-2	68.847	27.73			0.96413	0.94843	NaN	1	0	Median	1697200	761150	936060	8780	1555	8271	17409	42568	42568		1	9606
LLEVYDQLFK	1	0	Unmodified	1266.686	0.68598966	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10.6	3.6			1						1	2	1	1		1		1	20.969	20.969	2	9.163E-05	17049	DP690-12	152.47	99.976			0.85796	1.035	12.853	8	0	Median	667150000	351110000	316040000	8781	272	8272	17410;17411;17412;17413;17414;17415;17416;17417	42569;42570;42571;42572;42573;42574;42575;42576;42577;42578;42579;42580;42581;42582;42583;42584;42585;42586;42587;42588;42589;42590;42591;42592;42593;42594;42595	42582		27	9606
LLEYTPTAR	0	1	Unmodified	1062.571	0.5709599	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	13	0													1				14.237	14.237	2	0.0018112	7722	DP690-13	117.04	39.295			0.7211	0.83985	NaN	1	0	Median	159490000	88050000	71437000	8782	811	8273	17418	42596;42597	42597		2	9606
LLFDDGYECDVLGK	1	0	Unmodified	1642.7549	0.75487386	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	11	0											1						20.318	20.318	2	0.086781	17124	DP690-11	53.569	29.225			1.173	1.4444	NaN	1	0	Median	11029000	5969400	5059400	8783	1167	8274	17419	42598	42598		1	9606
LLFDETQGKPAVAVIDNGR	1	1	Unmodified	2042.0797	0.07965389	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							17.413	17.413	3	0.00022619	13075	DP690-10	98.227	83.836			0.71796	0.86176	NaN	1	0	Median	155770000	90799000	64970000	8784	13	8275	17420	42599;42600	42599		2	9606
LLFEVFDENR	0	1	Unmodified	1280.6401	0.6401021	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	3	0			1														20.685	20.685	2	0.00013328	16061	DP690-3	138.4	102.49			0.8498	0.97172	NaN	1	0	Median	14110000	7473500	6636300	8785	1911	8276	17421	42601;42602	42602		2	9606
LLFLLTALR	0	1	Unmodified	1058.6852	0.68520179	2184	Q9NPQ8	RIC8A	Synembryn-A	yes	yes	0	0	0	4	0				1													22.718	22.718	2	0.042455	17623	DP690-4	69.825	69.825			1.1718	1.2929	NaN	1	0	Median	782600	320740	461860	8786	2184	8277	17422	42603	42603		1	9606
LLFNDVQTLK	1	0	Unmodified	1189.6707	0.67067394	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.75	3.96		1								1	1	1					18.122	18.122	2	0.00017746	13970	DP690-10	131.06	66.35			0.83253	0.87826	12.019	2	0	Median	638900000	404120000	234780000	8787	1319	8278	17423;17424;17425;17426	42604;42605;42606;42607;42608;42609;42610	42604		7	9606
LLFSEDQQGGSLEQLLQR	0	1	Unmodified	2060.0538	0.05383307	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	10.5	0.5										1	1						21.618	21.618	2	1.0983E-49	18957	DP690-10	246.63	174.29			0.81545	0.97769	NaN	1	0	Median	40817000	29509000	11308000	8788	295	8279	17427;17428	42611;42612;42613;42614	42611		4	9606
LLFSGYQHHLSVR	0	1	Unmodified	1555.8259	0.82594581	2245	Q9NWW5	CLN6	Ceroid-lipofuscinosis neuronal protein 6	yes	yes	0	0	0	15	0															1		14.489	14.489	4	0.00011087	8115	DP690-15	117.95	99.853			1.1973	1.3822	NaN	1	0	Median	7099700	3261800	3837900	8789	2245	8280	17429	42615;42616	42615		2	9606
LLGAALPLLTK	1	0	Unmodified	1108.722	0.72198123	1979	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	10	0										1							20.045	20.045	2	0.00054432	16798	DP690-10	112.11	110.41			0.79226	0.97365	NaN	1	0	Median	35105000	20624000	14481000	8790	1979	8281	17430	42617;42618;42619;42620	42617		4	9606
LLGADSATVFNIQEPEEETANQEYK	1	0	Unmodified	2795.3137	0.31374874	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	11	0											1						19.778	19.778	2	2.8686E-87	16247	DP690-11	350.92	322.81			0.66822	0.79913	NaN	1	0	Median	100100000	59769000	40328000	8791	1758	8282	17431	42621;42622;42623;42624	42622		4	9606
LLGASELPIVTPALR	0	1	Unmodified	1548.9239	0.92392852	850	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	8	4				1								1					20.5	20.5	2	1.1086E-09	16459	DP690-12	202.03	202.03			0.79602	0.93652	15.594	2	0	Median	75257000	42071000	33186000	8792	850	8283	17432;17433	42625;42626;42627;42628;42629;42630;42631;42632	42626		8	9606
LLGDLLPEAVR	0	1	Unmodified	1194.6972	0.69722304	2097	Q9H1B7	IRF2BPL	Interferon regulatory factor 2-binding protein-like	yes	yes	0	0	0	11	0											1						20.126	20.126	2	0.003017	16869	DP690-11	92.051	36.038			0.78676	0.93844	NaN	1	0	Median	43636000	25883000	17753000	8793	2097	8284	17434	42633;42634;42635	42634		3	9606
LLGLAGFFPLHPMMITNAER	0	1	2 Oxidation (M)	2259.1544	0.15441551	2468	Q9Y3D3	MRPS16	28S ribosomal protein S16, mitochondrial	yes	yes	0	2	0	16	0																1	21.076	21.076	3	0.0081934	16013	DP690-16	56.215	39.284			0.7103	0.82612	NaN	1	0	Median	10941000	6476900	4464500	8794	2468	8285	17435	42636;42637;42638;42639	42639	2912;2913	4	9606
LLGLLFPLLAR	0	1	Unmodified	1224.7958	0.79581488	1728	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	3	0			2														24.97	24.97	2	0.0096689	20634	DP690-3	109.86	45.598			1.1615	1.2522	NaN	1	0	Median	1648400	1001500	646910	8795	1728	8286	17436;17437	42640;42641	42641		2	9606
LLGNTFVALSDLR	0	1	Unmodified	1417.7929	0.79291434	754	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	3	0			1														20.935	20.935	2	0.0030903	16297	DP690-3	89.561	27.781			2.8952	3.196	NaN	1	0	Median	4669100	1114500	3554600	8796	754	8287	17438	42642	42642		1	9606
LLGPSAAADILQLSSSLPLQSR	0	1	Unmodified	2236.2427	0.24269647	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															23.933	23.933	2	0.013981	17572	DP690-2	92.8	67.352			NaN	NaN	NaN	0	0	Median	0	0	0	8797	1555	8288	17439	42643	42643		1	9606
LLGPSLTSTTPASSSSGSSSR	0	1	Unmodified	1978.9807	0.98072771	881	P53814	SMTN	Smoothelin	yes	yes	0	0	0	11	0											1						15.123	15.123	2	2.0114000000000002E-41	9564	DP690-11	253.06	213.66			1.3561	1.6194	NaN	1	0	Median	31701000	14861000	16839000	8798	881	8289	17440	42644;42645;42646;42647	42645		4	9606
LLGQFTLIGIPPAPR	0	1	Unmodified	1591.945	0.94499831	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	9	3.56				1							1	1					21.532	21.532	2	1.3421E-05	16439	DP690-4	151.79	151.79			0.55418	0.66218	75.323	3	0	Plateau	66823000	37211000	29613000	8799	695	8290	17441;17442;17443	42648;42649;42650;42651;42652;42653;42654;42655;42656;42657;42658;42659	42657		12	9606
LLGSGYGGLTGGSSR	0	1	Unmodified	1380.6997	0.69974224	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	10	0										1							15.539	15.539	2	0.0041369	10317	DP690-10	80.69	80.69			0.67934	0.84629	NaN	1	0	Median	75535000	38542000	36994000	8800	1546	8291	17444	42660;42661	42660		2	9606
LLGSSASSPGYQSSYQVGINQR	0	1	Unmodified	2298.124	0.1240379	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	11	0											2						16.377	16.377	2	1.2982E-05	11367	DP690-11	157.09	114.29			NaN	NaN	NaN	0	0	Median	0	0	0	8801	2302	8292	17445;17446	42662;42663	42662		2	9606
LLGSTLTSEEKQER	1	1	Unmodified	1589.8261	0.82606496	2146	Q9H9F9	ACTR5	Actin-related protein 5	yes	yes	0	0	1	4	0				1													13.005	13.005	3	0.0022516	5926	DP690-4	79.885	44.227			0.99323	1.1328	NaN	1	0	Median	7739800	3416600	4323200	8802	2146	8293	17447	42664;42665;42666	42664		3	9606
LLGVFEQNQDPK	1	0	Unmodified	1386.7143	0.71432967	1701	Q8NFP7	NUDT10	Diphosphoinositol polyphosphate phosphohydrolase 3-alpha	yes	yes	0	0	0	8	0								1									16.828	16.828	2	0.0034311	10099	DP690-8	89.679	60.881			0.799	0.92716	NaN	1	0	Median	4805500	2556100	2249500	8803	1701	8294	17448	42667;42668;42669;42670	42667		4	9606
LLGWIQNK	1	0	Unmodified	970.56	0.56000128	549;1270;250	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	10.5	0.764										4	1	1					17.121	17.121	2	0.0002363	12492	DP690-10	189.46	120.07			1.0606	1.1866	49.539	2	0	Median	1360300000	623790000	736520000	8804	549;250;1270	8295	17449;17450;17451;17452;17453;17454	42671;42672;42673;42674;42675;42676;42677	42672		5	9606
LLGYVATLK	1	0	Unmodified	976.59572	0.59571809	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	11	0											1						16.781	16.781	2	0.080799	12081	DP690-11	58.23	19.424			0.98393	1.198	NaN	1	0	Median	36224000	17837000	18387000	8805	264	8296	17455	42678	42678		1	9606
LLHDLQIGEK	1	0	Unmodified	1164.6503	0.65027285	803	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	11	0											1						13.966	13.966	3	0.0055067	7919	DP690-11	75.509	53.823			0.66994	0.82785	NaN	1	0	Median	14744000	9278500	5465200	8806	803	8297	17456	42679;42680;42681	42679		3	9606
LLHDQVGVIQFGPYK	1	0	Unmodified	1712.925	0.92499115	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														17.526	17.526	3	0.00061438	11930	DP690-3	78.191	78.191			1.2429	1.3082	NaN	1	0	Median	43444000	18983000	24461000	8807	878	8298	17457	42682	42682		1	9606
LLHEVQELTTEVEK	1	0	Unmodified	1666.8778	0.87776618	1225	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	5	0					1												17.24	17.24	3	0.0061648	10920	DP690-5	70.272	45.742			1.4426	1.4423	NaN	1	0	Median	21148000	7034300	14113000	8808	1225	8299	17458	42683	42683		1	9606
LLHGFNAEGIHFS	0	0	Unmodified	1440.715	0.71499837	2408	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	14	0														1			17.236	17.236	3	0.037575	12026	DP690-14	56.551	29.545			NaN	NaN	NaN	0	0	Median	0	0	0	8809	2408	8300	17459	42684	42684		1	9606
LLHIEELRELQTK	1	1	Unmodified	1620.9199	0.91990577	2426	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	1	15	0															2		15.978	15.978	3;4	0.0071354	10100	DP690-15	69.261	69.261			0.93036	1.0456	7.2867	2	0	Median	134370000	70029000	64345000	8810	2426	8301	17460;17461	42685;42686;42687;42688	42686		4	9606
LLHLLLDDMPVKPYSDGEGGIEDENR	1	1	Oxidation (M)	2940.4175	0.41750231	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	1	1	10	0										1							17.813	17.813	4	0.012895	13574	DP690-10	47.05	47.05			0.87667	1.1088	NaN	1	0	Median	71712000	29644000	42067000	8811	1783	8302	17462	42689	42689	2351	1	9606
LLHLPLSLTALK	1	0	Unmodified	1317.8384	0.83840797	2002	Q9BTT6	LRRC1	Leucine-rich repeat-containing protein 1	yes	yes	0	0	0	12	0												1					19.445	19.445	3	0.00057576	15206	DP690-12	98.156	98.156			0.70369	0.84716	NaN	1	0	Median	17442000	9947900	7494000	8812	2002	8303	17463	42690;42691;42692;42693	42691		4	9606
LLHQLGFSDEQILTVK	1	0	Unmodified	1840.0094	0.0094490594	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															18.291	18.291	3	1.3093E-05	11593	DP690-2	125.67	103.25			1.05	1.0544	NaN	1	0	Median	6322700	2995800	3326900	8813	2418	8304	17464	42694;42695;42696;42697	42694		4	9606
LLIHQSLAGGIIGVK	1	0	Unmodified	1517.9293	0.92934824	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	11.7	3.33				1								3	1	1	1		17.129	17.129	2;3	6.1621E-10	11959	DP690-12	212.68	212.68			0.83841	0.94043	9.3858	7	0	Median	4392200000	1971899999.9999998	2420400000	8814	959	8305	17465;17466;17467;17468;17469;17470;17471	42698;42699;42700;42701;42702;42703;42704;42705;42706;42707;42708;42709;42710;42711;42712;42713;42714;42715;42716;42717	42704		19	9606
LLILADMADVYK	1	0	Unmodified	1363.7421	0.74212433	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											1						21.486	21.486	2	0.0017542	18571	DP690-11	97.456	72.581			0.87202	1.0636	NaN	1	0	Median	28911000	12682000	16228000	8815	657	8306	17472	42718;42719;42720	42718		3	9606
LLILALER	0	1	Unmodified	939.6117	0.6117025	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	9.5	0.5									1	1							19.339	19.339	2	0.002373	14054	DP690-9	134.06	87.011			0.84535	1.0568	NaN	1	0	Median	65680000	36103000	29577000	8816	1492	8307	17473;17474	42721;42722;42723	42722		2	9606
LLIQVGHEPMPPTLGTNVLGR	0	1	Oxidation (M)	2257.2253	0.22527227	2273	Q9NZJ7	MTCH1	Mitochondrial carrier homolog 1	yes	yes	0	1	0	14	0														1			18.423	18.423	3	0.00073381	13521	DP690-14	80.236	64.891			0.71963	0.87265	NaN	1	0	Median	28327000	17049000	11278000	8817	2273	8308	17475	42724	42724	2726	1	9606
LLLAVFVTPLTDLR	0	1	Unmodified	1569.9494	0.94941498	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	10.3	0.943									1		2						24.73	24.73	2	2.3653E-05	22602	DP690-11	157.78	108.41			0.75245	0.87776	NaN	1	0	Median	2738400	2254200	484240	8818	736	8309	17476;17477;17478	42725;42726;42727;42728;42729;42730;42731	42726		7	9606
LLLCGGAPLSATTQR	0	1	Unmodified	1556.8345	0.83446158	331	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	9	3.46			1								3						16.948	16.948	2	0.010719	11246	DP690-3	72.531	36.003			0.68965	0.80011	2.3212	2	0	Median	34414000	23064000	11350000	8819	331	8310	17479;17480;17481;17482	42732;42733;42734;42735	42735		4	9606
LLLDIPLQTPHK	1	0	Unmodified	1386.8235	0.82348619	808;16;446	P49792;O14715;Q99666;A6NKT7;P0DJD0;P0DJD1	RANBP2;RGPD8;RGPD5;RGPD3;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	0	9.5	0.5									1	1							18.183	18.183	3	3.2879E-05	12612	DP690-9	132.17	132.17			0.68293	0.83684	8.264	2	0	Median	236800000	134230000	102570000	8820	808;16;446	8311	17483;17484	42736;42737;42738;42739;42740;42741	42740		6	9606
LLLEAQAATGFLLDPVK	1	0	Unmodified	1798.024	0.024036491	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								22.601	22.601	2	0.06881	17867	DP690-9	100.55	84.459			1.4402	1.843	NaN	1	0	Median	12792000	5936100	6856000	8821	1319	8312	17485	42742	42742		0	9606
LLLEAQAATGFLLDPVKGER	1	1	Unmodified	2140.1892	0.18920434	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10.3	0.943									1		2						20.798	20.798	3	1.5579E-14	15704	DP690-9	191.47	169.03			0.7332	0.85038	NaN	1	0	Median	71694000	38315000	33380000	8822	1319	8313	17486;17487;17488	42743;42744;42745;42746;42747;42748;42749	42746		7	9606
LLLEEDENEESGSIKR	1	1	Unmodified	1859.9113	0.91125116	241	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	1	10	0										1							14.244	14.244	3	0.00024112	8450	DP690-10	97.797	58.168			1.0441	1.3195	NaN	1	0	Median	72671000	36404000	36267000	8823	241	8314	17489	42750	42750		1	9606
LLLEFTDTSYEEK	1	0	Unmodified	1586.7716	0.77156978	546	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	7	0							1										19.322	19.322	2	0.012636	13775	DP690-7	73.781	49.438			2.677	2.9297	NaN	1	0	Median	12470000	3926700	8543300	8824	546	8315	17490	42751	42751		1	9606
LLLENYEEYAAR	0	1	Unmodified	1482.7355	0.73545904	1369	Q16763	UBE2S	Ubiquitin-conjugating enzyme E2 S	yes	yes	0	0	0	15	0															1		18.375	18.375	2	3.7805E-05	13110	DP690-15	163.16	115.07			1.0921	1.262	NaN	1	0	Median	11840000	5281200	6559000	8825	1369	8316	17491	42752;42753	42752		2	9606
LLLEQILNK	1	0	Unmodified	1082.6699	0.66994566	195	O43913	ORC5	Origin recognition complex subunit 5	yes	yes	0	0	0	13	0													1				19.983	19.983	2	0.0012903	15459	DP690-13	122.74	53.566			0.88855	1.0277	NaN	1	0	Median	53616000	28720000	24896000	8826	195	8317	17492	42754;42755	42755		2	9606
LLLETHLPSK	1	0	Unmodified	1149.6758	0.67575932	95	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	12	0												1					14.637	14.637	3	0.064892	8481	DP690-12	48.998	21.134			NaN	NaN	NaN	0	0	Median	0	0	0	8827	95	8318	17493	42756	42756		1	9606
LLLGAGAVAYGVR	0	1	Unmodified	1258.7398	0.73975656	1948	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	14	0														1			18.062	18.062	2	3.6995E-05	13028	DP690-14	129.42	129.42			0.96107	1.1261	NaN	1	0	Median	154100000	71799000	82299000	8828	1948	8319	17494	42757;42758;42759	42757		3	9606
LLLGTLHLPR	0	1	Unmodified	1131.7128	0.71281353	2110	Q9H3P2	NELFA	Negative elongation factor A	yes	yes	0	0	0	12	0												2					17.821	17.821	3	0.0083356	12864	DP690-12	90.15	64.529			NaN	NaN	NaN	0	0	Median	0	0	0	8829	2110	8320	17495;17496	42760;42761	42760		2	9606
LLLIATGK	1	0	Unmodified	827.54804	0.54803961	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.5	0.5										1	1						16.157	16.157	2	0.047688	11139	DP690-10	134.06	19.517			0.95068	1.1079	8.0059	2	0	Median	479870000	245770000	234100000	8830	2190	8321	17497;17498	42762;42763	42762		0	9606
LLLIDWPELK	1	0	Unmodified	1238.7275	0.72746054	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	9.5	0.5									1	1							22.529	22.529	2	0.023372	17836	DP690-9	98.033	24.785			NaN	NaN	NaN	0	0	Median	16270000	0	16270000	8831	13	8322	17499;17500	42764;42765	42765		2	9606
LLLIGDSGVGK	1	0	Unmodified	1070.6336	0.63356015	937;831	P61026;Q92930;P61006;P59190;P51153	RAB10;RAB8B;RAB8A;RAB15;RAB13	Ras-related protein Rab-10;Ras-related protein Rab-8B;Ras-related protein Rab-8A;Ras-related protein Rab-15;Ras-related protein Rab-13	no	no	0	0	0	15	0															2		17.295	17.295	2	0.00029452	12125	DP690-15	120.12	0			0.86875	0.99502	9.928	2	0	Median	143290000	76901000	66387000	8832	937;831	8323	17501;17502	42766;42767;42768	42768		3	9606
LLLIQAFRPDR	0	2	Unmodified	1340.7929	0.79285476	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9.5	0.5									1	1							18.205	18.205	3	0.0040037	14182	DP690-10	113.22	72.056			0.80381	0.91332	4.6547	2	0	Median	79287000	44976000	34310000	8833	1264	8324	17503;17504	42769;42770;42771;42772;42773;42774;42775;42776	42770		8	9606
LLLLDTVTMQVTAR	0	1	Oxidation (M)	1588.8858	0.88582845	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	1	0	3	0			1														20.788	20.788	2	0.0029685	15964	DP690-3	123.8	88.597			NaN	NaN	NaN	0	0	Median	12082000	0	12082000	8834	2515	8325	17505	42777;42778	42778	2953	2	9606
LLLLGAGESGK	1	0	Unmodified	1056.6179	0.61791009	377;426;1422	Q5JWF2;P19087;A8MTJ3;P38405;P08754;P63096;P09471;P04899	GNAS;GNAT2;GNAT3;GNAL;GNAI3;GNAI1;GNAO1;GNAI2	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(t) subunit alpha-3;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-2	no	no	0	0	0	14	0														2			16.492	16.492	2	0.00078235	11122	DP690-14	108.57	0			0.82856	0.94797	NaN	1	0	Median	332210000	162890000	169320000	8835	1422;426;377	8326	17506;17507	42779;42780;42781	42780		3	9606
LLLNAENPR	0	1	Unmodified	1038.5822	0.58219329	477	P12931	SRC	Proto-oncogene tyrosine-protein kinase Src	yes	yes	0	0	0	12	0												1					14.072	14.072	2	0.00079421	7691	DP690-12	133.12	68.34			0.66917	0.79409	NaN	1	0	Median	50956000	30749000	20207000	8836	477	8327	17508	42782;42783	42783		2	9606
LLLNNDNLLR	0	1	Unmodified	1196.6877	0.68772099	864;768	P52907;P47755	CAPZA1;CAPZA2	F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2	no	no	0	0	0	10.4	4.03						1	2	1						1	1	1	17.931	17.931	2	8.84E-05	12856	DP690-14	157.86	104.09			0.82486	0.86763	7.9607	5	0	Median	1442100000	784390000	657740000	8837	864;768	8328	17509;17510;17511;17512;17513;17514;17515	42784;42785;42786;42787;42788;42789;42790;42791;42792;42793;42794;42795;42796;42797;42798;42799;42800;42801;42802;42803;42804;42805;42806;42807;42808	42787		25	9606
LLLNPGNQR	0	1	Unmodified	1023.5825	0.58252764	412	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	0	0	12	0												1					13.701	13.701	2	0.021492	7238	DP690-12	101.69	19.02			NaN	NaN	NaN	0	0	Median	94459000	0	94459000	8838	412	8329	17516	42809	42809		1	9606
LLLPGELAK	1	0	Unmodified	952.59572	0.59571809	224;399	P57053;O60814;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;Q99880;Q96A08;P06899;Q16778;P33778;P23527;Q8N257	H2BFS;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BA;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-A;Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B	no	no	0	0	0	14.5	2.93								1							1	4	19.405	19.405	2	0.00082243	10479	DP690-8	131.06	49.765			0.9347	1.0343	26.617	5	0	Median	5970999999.999999	3079399999.9999995	2891600000	8839	224;399	8330	17517;17518;17519;17520;17521;17522	42810;42811;42812;42813;42814;42815;42816;42817;42818;42819;42820;42821;42822;42823;42824;42825;42826;42827;42828;42829;42830;42831	42828		22	9606
LLLPLLLR	0	1	Unmodified	949.66882	0.66882345	1807	Q93074	MED12	Mediator of RNA polymerase II transcription subunit 12	yes	yes	0	0	0	10	0										1							22.162	22.162	2	0.0036025	19768	DP690-10	129.16	129.16			NaN	NaN	NaN	0	0	Median	5519800	5519800	0	8840	1807	8331	17523	42832;42833;42834	42833		3	9606
LLLPWLEAR	0	1	Unmodified	1109.6597	0.65971533	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	11	1.87									1	1	1			1			21.898	21.898	2	0.00031536	19314	DP690-10	159.2	137.11			0.77482	0.96982	5.0736	3	0	Median	104490000	55520000	48965000	8841	1075	8332	17524;17525;17526;17527	42835;42836;42837;42838;42839;42840;42841;42842;42843;42844;42845;42846;42847	42835		13	9606
LLLQGEADQSLLTFIDK	1	0	Unmodified	1903.0302	0.030244081	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7	3.56		1							1	1							22.864	22.864	2	1.3686E-17	18145	DP690-9	214.48	135.79			0.84085	0.94321	19.074	3	0	Median	205960000	109950000	96015000	8842	1046	8333	17528;17529;17530	42848;42849;42850;42851;42852;42853;42854;42855;42856;42857;42858;42859;42860;42861;42862	42858		15	9606
LLLQVQHASK	1	0	Unmodified	1135.6713	0.67134264	381;473	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	12.2	2.66							1		2	2	2	1	1	2	4	1	12.21	12.21	2;3	3.0654E-05	4697	DP690-9	155.42	155.42			0.86462	0.9972	7.5659	15	0	Median	2983599999.9999995	1587999999.9999998	1395600000	8843	381;473	8334	17531;17532;17533;17534;17535;17536;17537;17538;17539;17540;17541;17542;17543;17544;17545;17546	42863;42864;42865;42866;42867;42868;42869;42870;42871;42872;42873;42874;42875;42876;42877;42878;42879;42880;42881;42882;42883;42884;42885;42886;42887;42888;42889;42890;42891;42892;42893;42894;42895;42896;42897;42898;42899;42900;42901;42902;42903;42904;42905;42906;42907;42908;42909;42910;42911;42912;42913;42914;42915;42916;42917;42918	42913		56	9606
LLLTAIGYGHVR	0	1	Unmodified	1311.7663	0.76630566	1803;93	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	no	no	0	0	0	2	0		1															16.609	16.609	3	0.0067168	9689	DP690-2	71.555	60.1			1.3799	1.4434	NaN	1	0	Median	8285300	3721500	4563800	8844	1803;93	8335	17547	42919;42920	42920		2	9606
LLLTTDLK	1	0	Unmodified	915.56408	0.56408361	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	10	0										1							16.699	16.699	2	0.023469	12066	DP690-10	108.09	63.971			NaN	NaN	NaN	0	0	Median	19189000	19189000	0	8845	1762	8336	17548	42921	42921		1	9606
LLLTTQFPFK	1	0	Unmodified	1206.7012	0.70124579	2311	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	11	0											1						20.392	20.392	2	0.032858	17166	DP690-11	69.954	25.604			0.86429	1.0635	NaN	1	0	Median	10386000	6822000	3564300	8846	2311	8337	17549	42922	42922		1	9606
LLLWSQR	0	1	Unmodified	914.53379	0.53378653	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	11	0											1						17.617	17.617	2	0.00024721	13158	DP690-11	143.97	57.631			NaN	NaN	NaN	0	0	Median	67405000	67405000	0	8847	1319	8338	17550	42923;42924	42924		2	9606
LLLYDTVQSELEEK	1	0	Unmodified	1678.8665	0.8665328	1424	Q5PSV4	BRMS1L	Breast cancer metastasis-suppressor 1-like protein	yes	yes	0	0	0	14	0														1			20.605	20.605	2	0.010376	16344	DP690-14	104.07	43.507			NaN	NaN	NaN	0	0	Median	12410000	0	12410000	8848	1424	8339	17551	42925	42925		1	9606
LLMDLDINMR	0	1	2 Oxidation (M)	1264.6155	0.6155436	755	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	2	0	6	0						1											16.535	16.535	2	0.010416	9994	DP690-6	87.476	51.532			0.9808	1.1235	NaN	1	0	Median	6016800	3338800	2678000	8849	755	8340	17552	42926;42927;42928	42927	1119;1120	3	9606
LLMEQESSACSR	0	1	Oxidation (M)	1425.6228	0.62281383	349	O96011	PEX11B	Peroxisomal membrane protein 11B	yes	yes	0	1	0	15	0															1		11.071	11.071	2	0.00015233	3690	DP690-15	131.82	111.52			0.7128	0.82394	NaN	1	0	Median	12365000	6630100	5734700	8850	349	8341	17553	42929;42930	42929	358	2	9606
LLMMAGIDDCYTSAR	0	1	Oxidation (M)	1731.763	0.76301248	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	1	0	14	0														1			17.803	17.803	2	4.2147E-05	12758	DP690-14	159.94	147.58			1.028	1.2464	NaN	1	0	Median	35639000	16212000	19426000	8851	502	8342	17554	42931;42932	42932	637;638	2	9606
LLMMAGIDDCYTSAR	0	1	Unmodified	1715.7681	0.76809785	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	14	0														1			19.12	19.12	2	6.24E-35	14434	DP690-14	231.07	161.42			NaN	NaN	NaN	0	0	Median	11807000	0	11807000	8852	502	8342	17555	42933;42934	42933		2	9606
LLMMAGIDDCYTSAR	0	1	2 Oxidation (M)	1747.7579	0.7579271	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	2	0	15	0															1		15.431	15.431	2	0.00063122	9318	DP690-15	108.35	76.13			0.79221	0.91625	NaN	1	0	Median	6345100	2825800	3519300	8853	502	8342	17556	42935;42936;42937	42936	637;638	3	9606
LLMSLEELIK	1	0	Oxidation (M)	1203.6785	0.67846144	765	P46939	UTRN	Utrophin	yes	yes	0	1	0	10	0										1							20.296	20.296	2	0.038122	17706	DP690-10	73.233	34.271			0.1501	0.18218	NaN	1	0	Median	15846000	13614000	2232900	8854	765	8343	17557	42938	42938	1139	1	9606
LLMTGESAVK	1	0	Oxidation (M)	1063.5583	0.5583463	2565				yes	yes	0	1	0	2	0		1															16.758	16.758	2	0.028246	9755	DP690-2	75.213	38.054	+		0.89838	0.90501	NaN	1	0	Median	11107000	5573700	5533400	8855	2565	8344	17558	42939	42939	2982	1	9606
LLNILGLIFK	1	0	Unmodified	1142.7427	0.74271667	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	10.5	0.5										1	1						25.611	25.611	2	0.00016217	23752	DP690-10	133.6	133.6			0.89897	1.0683	0.13843	2	0	Median	8322700	4473800	3848800	8856	1311	8345	17559;17560	42940;42941;42942;42943;42944;42945;42946;42947;42948	42944		9	9606
LLNILMQLR	0	1	Oxidation (M)	1128.6689	0.6688998	198;609	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	no	no	0	1	0	11	0											1						20.011	20.011	2	0.069474	16726	DP690-11	69.998	54.117			0.86992	1.0378	NaN	1	0	Median	37209000	19929000	17280000	8857	198;609	8346	17561	42949	42949		1	9606
LLNILMQLR	0	1	Unmodified	1112.674	0.67398518	198;609	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	no	no	0	0	0	11	0											1						21.151	21.151	2	0.003865	18197	DP690-11	104.37	104.37			0.69173	0.85595	NaN	1	0	Median	9479200	5570400	3908700	8858	198;609	8346	17562	42950;42951	42950		2	9606
LLNNAFEELVAFQR	0	1	Unmodified	1662.873	0.87295558	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	9.33	2.98			1						1	1	2	1					22.274	22.274	2	2.9897E-15	19458	DP690-11	247.96	193.42			0.81714	0.90141	13.032	4	0	Median	443560000	249520000	194030000	8859	581	8347	17563;17564;17565;17566;17567;17568	42952;42953;42954;42955;42956;42957;42958;42959;42960;42961;42962;42963;42964;42965;42966;42967;42968;42969;42970;42971	42953		20	9606
LLNSDLGELINK	1	0	Unmodified	1327.7347	0.73473076	1117	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	11	0											2						18.944	18.944	2	0.0025892	15033	DP690-11	160.91	100.08			NaN	NaN	NaN	0	0	Median	0	0	0	8860	1117	8348	17569;17570	42972;42973	42972		2	9606
LLNTFLER	0	1	Unmodified	1004.5655	0.56548059	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								17.322	17.322	2	7.4689E-10	11562	DP690-9	176.29	87.149			NaN	NaN	NaN	0	0	Median	13413000	0	13413000	8861	1264	8349	17571	42974;42975	42974		2	9606
LLNTWTNRYPDAK	1	1	Unmodified	1590.8154	0.8154407	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									2								14.487	14.487	2;3	0.0021734	7883	DP690-9	83.226	48.328			1.0727	1.2441	NaN	1	0	Median	51015000	23736000	27279000	8862	1046	8350	17572;17573	42976;42977	42976		2	9606
LLNYPEEVDCVGLIK	1	0	Unmodified	1760.9019	0.90187244	2068	Q9C0F1	CEP44	Centrosomal protein of 44 kDa	yes	yes	0	0	0	13	0													1				19.503	19.503	2	0.00021076	14870	DP690-13	117.09	78.853			0.72425	0.84185	NaN	1	0	Median	23417000	12765000	10652000	8863	2068	8351	17574	42978	42978		1	9606
LLPAELPAK	1	0	Unmodified	950.58007	0.58006802	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								14.868	14.868	2	0.0023799	8300	DP690-9	110.81	75.189			0.65473	0.73748	NaN	1	0	Median	100630000	60193000	40436000	8864	1046	8352	17575	42979;42980;42981;42982	42980		4	9606
LLPAELPAKR	1	1	Unmodified	1106.6812	0.68117905	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.5	0.5									1	1							12.958	12.958	3	4.4147E-05	5853	DP690-9	134.77	113.93			3.7573	4.4911	67.282	2	0	Median	42036000	9498300	32537000	8865	1046	8353	17576;17577	42983;42984;42985;42986;42987;42988;42989	42989		7	9606
LLPDTINSINLDR	0	1	Unmodified	1482.8042	0.80420731	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							18.623	18.623	2	0.0037366	14739	DP690-10	157.38	84.145			NaN	NaN	NaN	0	0	Median	0	0	0	8866	1240	8354	17578	42990	42990		1	9606
LLPGYYMNLNQNPR	0	1	Oxidation (M)	1707.8403	0.84027524	1957	Q99755;O14986;O60331	PIP5K1A;PIP5K1B;PIP5K1C	Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Phosphatidylinositol 4-phosphate 5-kinase type-1 beta;Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma	yes	no	0	1	0	12	0												2					16.18	16.18	2	0.0055158	10595	DP690-12	120.31	79.539			NaN	NaN	NaN	0	0	Median	10215000	0	10215000	8867	1957	8355	17579;17580	42991;42992;42993	42993	2495	3	9606
LLPLEEHYR	0	1	Unmodified	1168.6241	0.6240581	2278	Q9NZN4	EHD2	EH domain-containing protein 2	no	no	0	0	0	12	0												1					14.227	14.227	3	0.0038123	7893	DP690-12	88.37	46.082			0.95234	1.1521	NaN	1	0	Median	15555000	6971900	8583400	8868	2278	8356	17581	42994;42995;42996;42997;42998	42994		5	9606
LLPLGATDTAVFDVR	0	1	Unmodified	1586.8668	0.86680757	1848	Q96EY5	MVB12A	Multivesicular body subunit 12A	yes	yes	0	0	0	14	0														1			20.543	20.543	2	0.0025294	16360	DP690-14	99.5	77.161			0.72035	0.8728	NaN	1	0	Median	39186000	22203000	16983000	8869	1848	8357	17582	42999;43000	43000		2	9606
LLPQGLAVYASPENK	1	0	Unmodified	1598.8668	0.86680757	2050	Q9BYD2	MRPL9	39S ribosomal protein L9, mitochondrial	yes	yes	0	0	0	15	0															1		17.993	17.993	2	2.381E-05	12595	DP690-15	145.23	128.06			0.66715	0.77471	NaN	1	0	Median	5315600	2870100	2445500	8870	2050	8358	17583	43001;43002	43002		2	9606
LLPVLLSTAQEADPEVR	0	1	Unmodified	1850.0149	0.014928368	1728	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	3	0			2														20.314	20.314	2	2.9865E-06	15575	DP690-3	136.7	112.44			1.4451	1.6205	NaN	1	0	Median	7626000	2652900	4973100	8871	1728	8359	17584;17585	43003;43004	43003		2	9606
LLPVYLNCVLK	1	0	Unmodified	1330.7683	0.7682795	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	11	0											1						20.285	20.285	2	0.0069188	17010	DP690-11	84.476	57.961			0.92065	1.0696	NaN	1	0	Median	145710000	74422000	71293000	8872	883	8360	17586	43005;43006;43007;43008	43005		4	9606
LLPYEQSSLLELIK	1	0	Unmodified	1644.9338	0.9338245	1380	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	11	0											2						22.308	22.308	2	0.00035326	19657	DP690-11	142.19	86.472			NaN	NaN	NaN	0	0	Median	10749000	5426400	5322400	8873	1380	8361	17587;17588	43009;43010;43011	43011		3	9606
LLQAETASNSAR	0	1	Unmodified	1259.647	0.64697839	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	9.5	0.5									1	1							11.212	11.212	2	0.00025271	4045	DP690-10	147.73	105.86			0.80795	1.0067	5.8239	2	0	Median	82930000	45776000	37155000	8874	1301	8362	17589;17590	43012;43013;43014;43015;43016	43013		5	9606
LLQAFLER	0	1	Unmodified	988.57057	0.57056597	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														17.755	17.755	2	0.04971	12300	DP690-3	117.4	52.641			0.92424	1.0198	NaN	1	0	Median	46841000	24421000	22420000	8875	892	8363	17591	43017	43017		0	9606
LLQAGFSELK	1	0	Unmodified	1104.6179	0.61791009	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	5	0					1												16.658	16.658	2	0.00059102	10145	DP690-5	116.05	51.013			0.81433	0.80945	NaN	1	0	Median	174890000	96903000	77984000	8876	2385	8364	17592	43018;43019;43020;43021;43022;43023	43022		6	9606
LLQAGFSELKETEK	2	0	Unmodified	1591.8457	0.84573777	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	1	4.75	0.433				1	3												15.204	15.204	2;3	7.8495E-06	8254	DP690-5	153.81	121.53			0.86622	0.84504	12.311	3	0	Plateau	304590000	160040000	144550000	8877	2385	8365	17593;17594;17595;17596	43024;43025;43026;43027;43028;43029;43030;43031;43032;43033;43034	43032		11	9606
LLQALHIDGPR	0	1	Unmodified	1231.7037	0.70370541	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								15.26	15.26	3	0.0020592	8849	DP690-9	86.189	48.681			0.94484	1.176	NaN	1	0	Median	19199000	10176000	9023400	8878	2217	8366	17597	43035;43036;43037	43036		3	9606
LLQDFFNGK	1	0	Unmodified	1080.5604	0.56039521	463;508	P11142;P54652;P17066	HSPA8;HSPA2;HSPA6	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6	no	no	0	0	0	6.67	3.77				2								1					18.695	18.695	1;2	0.00018697	13064	DP690-4	166.78	109.5			1.8333	1.9636	41.867	3	0	Median	595090000	263260000	331830000	8879	463;508	8367	17598;17599;17600	43038;43039;43040;43041;43042;43043;43044;43045;43046	43044		9	9606
LLQDFFNGR	0	1	Unmodified	1108.5665	0.56654322	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	8	4				1								1					18.89	18.89	2	8.7762E-05	14417	DP690-12	154.31	74.711			1.5321	1.664	NaN	1	0	Median	138810000	100930000	37884000	8880	449	8368	17601;17602	43047;43048;43049;43050;43051;43052	43047		6	9606
LLQDFNR	0	1	Unmodified	904.47667	0.47666558	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								14.015	14.015	2	0.00021028	7086	DP690-9	146.21	51.544			NaN	NaN	NaN	0	0	Median	162710000	162710000	0	8881	1046	8369	17603	43053;43054	43054		2	9606
LLQDHPWLLSQNLVVKPDQLIK	2	0	Unmodified	2596.4741	0.47409339	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	11	0											1						19.973	19.973	4	0.0003916	16448	DP690-11	85.224	75.576			0.55633	0.65305	NaN	1	0	Median	53592000	34224000	19368000	8882	873	8370	17604	43055;43056;43057;43058	43055		4	9606
LLQDSLGGNSHTLMIACVSPADSNLEETLNTLR	0	1	Oxidation (M)	3584.7451	0.74506081	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	1	0	10	0										1							21.012	21.012	3	1.0522E-07	18216	DP690-10	81.91	58.719			0.6579	0.82302	NaN	1	0	Median	60420000	32422000	27999000	8883	311	8371	17605	43059	43059	320	1	9606
LLQDSVDFSLADAINTEFK	1	0	Unmodified	2125.0579	0.057915395	424	P08670	VIM	Vimentin	yes	yes	0	0	0	13	0													2				23.418	23.418	2	3.3724E-17	19499	DP690-13	258.02	258.02			0.75844	0.86452	14.913	2	0	Median	25672000	13601000	12071000	8884	424	8372	17606;17607	43060;43061;43062	43061		3	9606
LLQEAHDLHLSSLQLAK	1	0	Unmodified	1915.0527	0.052710858	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	5	1.22				2	1		1										16.33	16.33	2;4	0.00015146	10257	DP690-4	102.39	62.858			39.695	40.575	NaN	1	0	Median	415450000	8331900	407120000	8885	1784	8373	17608;17609;17610;17611	43063;43064;43065;43066;43067;43068;43069	43065		7	9606
LLQELSHPNIIGLLDAFGHK	1	0	Unmodified	2214.2161	0.21608779	822	P50613	CDK7	Cyclin-dependent kinase 7	yes	yes	0	0	0	14	0														1			21.871	21.871	4	3.0062E-05	17985	DP690-14	115.57	115.57			0.75365	0.90648	NaN	1	0	Median	25510000	13813000	11697000	8886	822	8374	17612	43070;43071;43072;43073	43071		4	9606
LLQEQHQLSSR	0	1	Unmodified	1337.7052	0.70516197	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								10.625	10.625	3	0.047998	2970	DP690-9	67.214	40.465			NaN	NaN	NaN	0	0	Median	9183900	0	9183900	8887	1453	8375	17613	43074	43074		1	9606
LLQETMYMTVSIIDR	0	1	2 Oxidation (M)	1843.906	0.90597154	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	2	0	13	0													1				17.905	17.905	2	0.038886	12635	DP690-13	77.124	54.562			1.0551	1.2981	NaN	1	0	Median	24575000	10761000	13814000	8888	491	8376	17614	43075	43075	617;618	0	9606
LLQFVTGSSR	0	1	Unmodified	1106.6084	0.60840804	2156	Q9HAU4	SMURF2	E3 ubiquitin-protein ligase SMURF2	yes	yes	0	0	0	11	0											1						16.349	16.349	2	0.086539	11561	DP690-11	56.432	33.651			0.91163	1.0993	NaN	1	0	Median	86743000	39438000	47305000	8889	2156	8377	17615	43076	43076		1	9606
LLQFYAETCPAPER	0	1	Unmodified	1693.8134	0.81339179	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						17.434	17.434	2	6.4395E-05	12987	DP690-11	151.15	122.19			0.79904	0.96212	NaN	1	0	Median	78371000	44926000	33445000	8890	65	8378	17616	43077;43078	43078		2	9606
LLQIIERYPEETLSLMTK	1	1	Oxidation (M)	2192.1763	0.17625639	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	9	0									1								18.963	18.963	3	0.0019953	13572	DP690-9	73.252	55.162			0.7331	0.85027	NaN	1	0	Median	52245000	29334000	22911000	8891	1046	8379	17617	43079;43080	43080	1614	2	9606
LLQIIERYPEETLSLMTK	1	1	Unmodified	2176.1813	0.18134177	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								20.84	20.84	3	0.0010875	15925	DP690-9	77.191	77.191			0.77048	0.89361	NaN	1	0	Median	15959000	8476300	7483100	8892	1046	8379	17618	43081;43082	43081		2	9606
LLQISSFNGK	1	0	Unmodified	1105.6132	0.61315906	1803;93	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	no	no	0	0	0	2	0		1															16.552	16.552	2	0.030262	9621	DP690-2	70.816	8.27			0.98925	0.98197	NaN	1	0	Median	3257000	1271000	1985900	8893	1803;93	8380	17619	43083	43083		1	9606
LLQLVEDR	0	1	Unmodified	984.5604	0.56039521	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	10.5	1.5									1			1					16.033	16.033	2	0.049874	10353	DP690-12	155.75	55.566			0.7973	0.88375	1.2287	2	0	Median	1528699999.9999998	832110000	696630000	8894	517	8381	17620;17621	43084;43085	43084		0	9606
LLQNILDAGFQMPTPIQMQAIPVMLHGR	0	1	3 Oxidation (M)	3179.6294	0.62936653	2443	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	3	0	12	0												1					20.492	20.492	3	2.3619E-05	16524	DP690-12	96.128	96.128			0.98027	1.1925	NaN	1	0	Median	13054000	8078500	4975700	8895	2443	8382	17622	43086;43087	43087	2892;2893;2894	2	9606
LLQQEEEIK	1	0	Unmodified	1128.6027	0.60265396	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	12	0												1					13.11	13.11	2	0.022132	6420	DP690-12	77.318	39.184			0.7913	0.90144	NaN	1	0	Median	144930000	84965000	59964000	8896	886	8383	17623	43088	43088		1	9606
LLQQGTAPAQAK	1	0	Unmodified	1224.6826	0.68263561	1595	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	12	0												1					10.675	10.675	2	0.0045208	3138	DP690-12	86.882	86.882			0.71924	0.86453	NaN	1	0	Median	21996000	13085000	8911400	8897	1595	8384	17624	43089	43089		1	9606
LLQQLFLK	1	0	Unmodified	1001.6274	0.62735256	2300	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	6	0						1											18.875	18.875	2	0.054372	12746	DP690-6	113.25	52.464			0.94615	1.0822	NaN	1	0	Median	9214800	4305700	4909100	8898	2300	8385	17625	43090	43090		0	9606
LLQQQNDITGLSR	0	1	Unmodified	1484.7947	0.79470526	2415	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	10	0										1							15.274	15.274	2	0.00010903	9940	DP690-10	170.89	121.91			1.0601	1.3218	NaN	1	0	Median	72041000	34348000	37693000	8899	2415	8386	17626	43091;43092	43091		2	9606
LLQQSQDPLLMGLFPTNPK	1	0	Unmodified	2139.1398	0.13981131	1866	Q96H55	MYO19	Unconventional myosin-XIX	yes	yes	0	0	0	11	0											2						22.364	22.364	2	0.0024608	19698	DP690-11	137.8	101.5			NaN	NaN	NaN	0	0	Median	7887700	4597500	3290100	8900	1866	8387	17627;17628	43093;43094	43093		2	9606
LLQQVSQIYQSIEFSR	0	1	Unmodified	1938.0211	0.021076378	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	10	0										1							21.54	21.54	2	5.7222E-17	18811	DP690-10	223.36	175.13			NaN	NaN	NaN	0	0	Median	0	0	0	8901	1252	8388	17629	43095	43095		1	9606
LLQSLLDTR	0	1	Unmodified	1057.6132	0.61315906	1176	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	3	0			2														17.755	17.755	2	0.02426	12316	DP690-3	120.15	32.832			NaN	NaN	NaN	0	0	Median	0	0	0	8902	1176	8389	17630;17631	43096;43097	43097		2	9606
LLQSNPVLEAFGNAK	1	0	Unmodified	1599.8621	0.86205654	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						19.811	19.811	2	1.4053E-05	16363	DP690-11	134.13	99.375			0.68057	0.8266	NaN	1	0	Median	81890000	45806000	36085000	8903	65	8390	17632	43098;43099;43100;43101	43100		4	9606
LLQSQLQVK	1	0	Unmodified	1055.6339	0.63389451	1876	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	13	0													1				13.795	13.795	2	0.02825	7065	DP690-13	74.255	47.001			0.79039	0.9134	NaN	1	0	Median	62557000	32370000	30186000	8904	1876	8391	17633	43102;43103;43104	43103		3	9606
LLQTAATAAQQGGQANHPTAAVVTEK	1	0	Unmodified	2575.3354	0.33542766	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	11	0											1						13.57	13.57	3	2.5725E-05	7289	DP690-11	119.25	102.09			0.70348	0.85808	NaN	1	0	Median	28782000	16678000	12105000	8905	708	8392	17634	43105;43106;43107	43106		3	9606
LLQTCFSSPADDSMDR	0	1	Oxidation (M)	1857.7873	0.78731297	2274	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	1	0	6	0						1											15.755	15.755	2	0.025509	9142	DP690-6	67.997	33.242			1.2373	1.414	NaN	1	0	Median	5527800	1951400	3576400	8906	2274	8393	17635	43108	43108	2728	1	9606
LLQTDDEEEAGLLELLK	1	0	Unmodified	1927.999	0.99900353	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														22.969	22.969	2	1.2085E-12	18577	DP690-3	251.91	199.22			1.1507	1.2183	NaN	1	0	Median	9964300	4612800	5351600	8907	892	8394	17636	43109;43110;43111;43112	43112		4	9606
LLQTLPYLPSCAVQCHVGHAR	0	1	Unmodified	2419.2253	0.22528904	15	A6NKF1	SAC3D1	SAC3 domain-containing protein 1	yes	yes	0	0	0	14	0														1			16.583	16.583	4	0.00056319	11066	DP690-14	76.118	54.3			0.73965	0.8945	NaN	1	0	Median	52515000	27940000	24575000	8908	15	8395	17637	43113;43114;43115	43114		3	9606
LLQVASPFLEPHLVR	0	1	Unmodified	1717.9879	0.98792576	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	7.2	3.49			2						1	1	1						18.962	18.962	3	4.1849E-06	15238	DP690-10	155.14	155.14			0.73736	0.90884	4.3053	3	0	Median	485500000	275320000	210180000	8909	272	8396	17638;17639;17640;17641;17642	43116;43117;43118;43119;43120;43121;43122;43123;43124;43125;43126;43127;43128;43129;43130;43131	43116		16	9606
LLQVVEEPQALAAFLR	0	1	Unmodified	1796.0196	0.019619815	1972	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	13	0													1				23.142	23.142	2	1.9221E-07	19235	DP690-13	172.13	172.13			0.82499	0.99654	NaN	1	0	Median	8844300	4863500	3980800	8910	1972	8397	17643	43132;43133;43134;43135	43132		4	9606
LLQYSDALEHLLTTGQGVVLER	0	1	Unmodified	2454.3118	0.31183867	314	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	14	0														1			22.482	22.482	3	2.3398E-10	18738	DP690-14	154.84	131.82			0.85512	1.0346	NaN	1	0	Median	49130000	26425000	22705000	8911	314	8398	17644	43136;43137;43138;43139	43139		4	9606
LLREEDNKYCADCEAK	2	1	Unmodified	2012.8932	0.89317503	1623	Q8IYB5	SMAP1	Stromal membrane-associated protein 1	yes	yes	0	0	2	4	0				1													10.827	10.827	4	0.0032785	3273	DP690-4	81.448	59.645			0.83282	0.90361	NaN	1	0	Median	23029000	12333000	10696000	8912	1623	8399	17645	43140;43141	43140		2	9606
LLSAGQLLFQGR	0	1	Unmodified	1301.7456	0.74557022	1409	Q567V2	MPV17L2	Mpv17-like protein 2	yes	yes	0	0	0	16	0																1	19.584	19.584	2	0.00024419	14223	DP690-16	155.07	118.51			0.83492	0.98139	NaN	1	0	Median	3510300	2012800	1497500	8913	1409	8400	17646	43142;43143;43144	43142		3	9606
LLSAMLVSEGDLTEQKR	1	1	Oxidation (M)	1904.9877	0.98772734	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	1	1	10	0										1							16.216	16.216	3	0.0051108	11414	DP690-10	61.821	46.613			0.71242	0.89137	NaN	1	0	Median	84211000	46316000	37895000	8914	1377	8401	17647	43145	43145	2122	1	9606
LLSASPVDAAIR	0	1	Unmodified	1211.6874	0.68738664	2199	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	12	0												1					16.16	16.16	2	0.00026515	10610	DP690-12	119.68	53.41			0.74243	0.84755	NaN	1	0	Median	158390000	96711000	61675000	8915	2199	8402	17648	43146;43147;43148	43147		3	9606
LLSDFLDSEVSELR	0	1	Unmodified	1621.8199	0.81991695	1966	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	3	0			1														22.435	22.435	2	0.0023276	17981	DP690-3	90.434	62.57			1.2208	1.3335	NaN	1	0	Median	3013600	1280000	1733600	8916	1966	8403	17649	43149;43150	43149		2	9606
LLSDTVASDPGVLQEQLATTK	1	0	Unmodified	2185.1478	0.14779303	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									2								19.005	19.005	2	5.0995E-11	13639	DP690-9	166.64	124.55			NaN	NaN	NaN	0	0	Median	6037700	3067400	2970400	8917	2411	8404	17650;17651	43151;43152;43153;43154	43151		4	9606
LLSEEVFDFSSGQITQVK	1	0	Unmodified	2026.0259	0.025886985	128	O14980	XPO1	Exportin-1	yes	yes	0	0	0	3	0			1														21.055	21.055	2	0.00062069	16435	DP690-3	98	66.336			1.335	1.4025	NaN	1	0	Median	6613200	2707900	3905300	8918	128	8405	17652	43155;43156;43157	43155		3	9606
LLSETVMPR	0	1	Oxidation (M)	1060.5587	0.55868065	590	P26232	CTNNA2	Catenin alpha-2	yes	yes	0	1	0	2	0		1															13.676	13.676	2	0.029739	6156	DP690-2	91.626	12.158			NaN	NaN	NaN	0	0	Median	13742000	0	13742000	8919	590	8406	17653	43158	43158	780	1	9606
LLSGPLDQVR	0	1	Unmodified	1096.6241	0.6240581	2114	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	0	2	0		1															16.157	16.157	2	0.0028951	9138	DP690-2	96.331	47.576			0.59608	0.62162	NaN	1	0	Median	5087400	2876700	2210700	8920	2114	8407	17654	43159	43159		1	9606
LLSISGK	1	0	Unmodified	716.44324	0.44324019	397	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	15	1														1		1	13.125	13.125	2	0.03516	6196	DP690-14	114.02	0			NaN	NaN	NaN	0	0	Median	32584000	0	32584000	8921	397	8408	17655;17656	43160;43161;43162;43163	43160		4	9606
LLSLISIALPENK	1	0	Unmodified	1409.8494	0.84936659	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1.5	0.5	1	1															21.893	21.893	2	0.00089795	13649	DP690-1	104.22	92.689			0.84504	0.84267	20.015	2	0	Median	4609300	2481000	2128200	8922	1555	8409	17657;17658	43164;43165;43166;43167;43168	43164		5	9606
LLSLLPEYVVPYMIHLLAHDPDFTR	0	1	Unmodified	2951.5619	0.56192212	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10	0										1							26.123	26.123	4	0.0030694	24441	DP690-10	69.152	44.741			NaN	NaN	NaN	0	0	Median	1015100	1015100	0	8923	1377	8410	17659	43169	43169		1	9606
LLSNAINR	0	1	Unmodified	899.51886	0.51886475	2156	Q9HAU4	SMURF2	E3 ubiquitin-protein ligase SMURF2	yes	yes	0	0	0	11	0											1						12.553	12.553	2	0.057342	5763	DP690-11	110.61	31.158			0.85198	1.0254	NaN	1	0	Median	75912000	38146000	37766000	8924	2156	8411	17660	43170	43170		0	9606
LLSNTVMPR	0	1	Unmodified	1029.5641	0.56410038	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											1						14.502	14.502	2	0.010421	8655	DP690-11	136.16	64.017			NaN	NaN	NaN	0	0	Median	0	0	0	8925	657	8412	17661	43171	43171		1	9606
LLSPEDMNKLMFLKSNML	2	0	3 Oxidation (M)	2171.0676	0.067633919	1441	Q5T7W0	ZNF618	Zinc finger protein 618	yes	yes	0	3	2	3	0			1														17.336	17.336	2	0.052736	11755	DP690-3	60.598	14.529			NaN	NaN	NaN	0	0	Median	0	0	0	8926	1441	8413	17662	43172	43172		1	9606
LLSPFMPFVTEELFQR	0	1	Oxidation (M)	1969.0019	0.0019208405	597	P26640	VARS	Valine--tRNA ligase	yes	yes	0	1	0	6.5	3.5			1							1							23.66	23.66	2	0.00096032	21534	DP690-10	104.17	80.66			1.0086	1.1724	23.062	2	0	Median	13944000	6772000	7171600	8927	597	8414	17663;17664	43173;43174;43175;43176;43177	43175	794	5	9606
LLSPVVPQISAPQSNK	1	0	Unmodified	1676.9461	0.94612052	1643	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	11	0											1						17.631	17.631	2	0.0026508	13141	DP690-11	123.26	81.255			NaN	NaN	NaN	0	0	Median	12775000	0	12775000	8928	1643	8415	17665	43178	43178		1	9606
LLSSFDFFLTDAR	0	1	Unmodified	1530.7718	0.77184455	285	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	12	0												1					23.083	23.083	2	0.0015991	19596	DP690-12	96.113	59.689			0.71632	0.86639	NaN	1	0	Median	1821500	1056400	765040	8929	285	8416	17666	43179	43179		1	9606
LLSSLGGFK	1	0	Unmodified	920.53312	0.53311783	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							16.854	16.854	2	0.014306	11906	DP690-10	85.212	35.853			0.83685	1.0223	NaN	1	0	Median	172960000	92817000	80145000	8930	1782	8417	17667	43180;43181	43180		2	9606
LLSTDPVAAK	1	0	Unmodified	1013.5757	0.57571092	1152	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	11	0											1						13.348	13.348	2	0.0047072	6985	DP690-11	91.069	32.901			0.72568	0.87733	NaN	1	0	Median	58432000	32815000	25616000	8931	1152	8418	17668	43182	43182		1	9606
LLSVEGSTLR	0	1	Unmodified	1073.6081	0.60807369	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	10	1									1		1						15.258	15.258	2	0.00018734	9733	DP690-11	129.42	54.312			0.8291	0.95938	NaN	1	0	Median	177640000	96912000	80723000	8932	65	8419	17669;17670	43183;43184;43185;43186;43187	43184		5	9606
LLSVLAQVFTELAQK	1	0	Unmodified	1658.9607	0.96070795	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									2								25.54	25.54	2	0.0030224	21136	DP690-9	139.76	89.468			NaN	NaN	NaN	0	0	Median	0	0	0	8933	2217	8420	17671;17672	43188;43189	43189		2	9606
LLSVVPVPEGYSVK	1	0	Unmodified	1485.8443	0.84428121	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	6.23	3.02	1	2	1	1	21	11	3	2	1			1	1	1	1	1	23.195	23.195	1;2	9.0896E-12	12634	DP690-5	185.25	136.25			67.786	67.323	8.7352	5	0	Median	63778000000	902950000	62875000000	8934	2071	8421	17673;17674;17675;17676;17677;17678;17679;17680;17681;17682;17683;17684;17685;17686;17687;17688;17689;17690;17691;17692;17693;17694;17695;17696;17697;17698;17699;17700;17701;17702;17703;17704;17705;17706;17707;17708;17709;17710;17711;17712;17713;17714;17715;17716;17717;17718;17719;17720	43190;43191;43192;43193;43194;43195;43196;43197;43198;43199;43200;43201;43202;43203;43204;43205;43206;43207;43208;43209;43210;43211;43212;43213;43214;43215;43216;43217;43218;43219;43220;43221;43222;43223;43224;43225;43226;43227;43228;43229;43230;43231;43232;43233;43234;43235;43236;43237;43238;43239;43240;43241;43242;43243;43244;43245;43246;43247;43248;43249;43250;43251;43252;43253;43254;43255;43256;43257;43258;43259;43260;43261;43262;43263;43264;43265;43266;43267;43268;43269;43270;43271;43272;43273;43274;43275;43276;43277;43278;43279;43280;43281;43282;43283;43284;43285;43286;43287;43288;43289;43290;43291;43292;43293;43294;43295;43296;43297;43298;43299;43300;43301	43212		112	9606
LLTECPPMMDTEYTK	1	0	2 Oxidation (M)	1859.7991	0.79912321	892	P55060	CSE1L	Exportin-2	yes	yes	0	2	0	3	0			1														14.305	14.305	2	1.6365E-05	7704	DP690-3	127.87	113.42			0.94713	1.0043	NaN	1	0	Median	10672000	4281400	6391000	8935	892	8422	17721	43302;43303	43303	1360;1361	2	9606
LLTEIHGGAGGPSGR	0	1	Unmodified	1420.7423	0.74227576	1369	Q16763	UBE2S	Ubiquitin-conjugating enzyme E2 S	yes	yes	0	0	0	7	0							1										12.045	12.045	3	0.010736	4719	DP690-7	60.549	38.228			0.71778	0.82627	NaN	1	0	Median	16835000	9321700	7513200	8936	1369	8423	17722	43304;43305;43306;43307	43305		4	9606
LLTEISSSWDGCQK	1	0	Unmodified	1622.761	0.76102187	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								17.559	17.559	2	0.0024172	11908	DP690-9	90.146	50.267			1.1597	1.4484	NaN	1	0	Median	5084700	2425300	2659300	8937	2217	8424	17723	43308	43308		1	9606
LLTIGDANGEIQR	0	1	Unmodified	1398.7467	0.74669243	1585	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	4	0				1													16.324	16.324	2	0.044285	10266	DP690-4	147.3	100.08			0.91721	1.0504	NaN	1	0	Median	21210000	10968000	10242000	8938	1585	8425	17724	43309	43309		0	9606
LLTLPNGER	0	1	Unmodified	1011.5713	0.57129425	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								14.986	14.986	2	0.019309	8432	DP690-9	80.165	40.913			0.86234	1.0736	NaN	1	0	Median	19125000	11128000	7997300	8939	1264	8426	17725	43310	43310		1	9606
LLTMMPTEEER	0	1	2 Oxidation (M)	1380.6265	0.62650222	2511	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	2	0	3	0			1														12.349	12.349	2	0.01303	5096	DP690-3	80.239	61.632			0.74152	0.83277	NaN	1	0	Median	7991400	4260500	3730900	8940	2511	8427	17726	43311;43312	43311	2944;2945	2	9606
LLTSFLPAQLLR	0	1	Unmodified	1370.8286	0.82857157	414	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	9	3.54			1							1	1	1					22.34	22.34	2	3.0376E-06	19669	DP690-11	195.32	141.83			0.82086	1.0054	13.826	3	0	Median	78861000	43656000	35206000	8941	414	8428	17727;17728;17729;17730	43313;43314;43315;43316;43317;43318;43319;43320;43321;43322;43323;43324;43325	43316		13	9606
LLTSGYLQR	0	1	Unmodified	1049.5869	0.58694431	1856	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	6	0						1											15.057	15.057	2	0.0029412	8233	DP690-6	108.09	55.685			0.80543	0.90949	NaN	1	0	Median	19959000	10301000	9657100	8942	1856	8429	17731	43326;43327	43326		2	9606
LLTSQCGAAEEEFVQR	0	1	Unmodified	1836.8676	0.8676122	1057	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	14	0														1			16.296	16.296	2	9.973899999999999E-28	10658	DP690-14	294.4	244.26			0.84219	1.019	NaN	1	0	Median	49059000	27119000	21940000	8943	1057	8430	17732	43328;43329;43330;43331	43330		4	9606
LLTSYGFIQCSER	0	1	Unmodified	1572.7606	0.76062794	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	8.33	3.77			1								2						17.871	17.871	2	0.00021351	12508	DP690-3	118.4	96.375			1.3194	1.4958	NaN	1	0	Median	10655000	4666800	5987700	8944	264	8431	17733;17734;17735	43332;43333;43334	43334		3	9606
LLVELGFSK	1	0	Unmodified	1004.5906	0.59063271	1535	Q7LG56	RRM2B	Ribonucleoside-diphosphate reductase subunit M2 B	yes	yes	0	0	0	6	0						1											18.826	18.826	2	0.0021152	12689	DP690-6	113.71	69.312			0.7743	0.87823	NaN	1	0	Median	6330100	3285000	3045100	8945	1535	8432	17736	43335;43336;43337;43338	43337		4	9606
LLVGNDDVHIIAR	0	1	Unmodified	1433.7991	0.79906235	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															16.018	16.018	3	0.00018119	8890	DP690-2	140.14	109.59			NaN	NaN	NaN	0	0	Median	6668600	0	6668600	8946	1555	8433	17737	43339;43340	43339		2	9606
LLVHMGLLK	1	0	Unmodified	1022.6311	0.63105773	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					16.27	16.27	2	0.051533	10825	DP690-12	66.993	66.993			0.80859	0.97186	NaN	1	0	Median	23264000	12637000	10627000	8947	750	8434	17738	43341	43341		1	9606
LLVLDPAQR	0	1	Unmodified	1023.6077	0.60767976	824	P50750	CDK9	Cyclin-dependent kinase 9	yes	yes	0	0	0	10	4						1								1			16.43	16.43	2	0.012699	10825	DP690-14	86.833	36.129			0.86312	1.0093	3.3439	2	0	Median	57969000	34235000	23733000	8948	824	8435	17739;17740	43342;43343;43344;43345;43346;43347	43344		6	9606
LLVPLVPDLQDVAQLR	0	1	Unmodified	1788.0509	0.050919944	1993	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	7	4			1								1						23.551	23.551	2	3.9402E-07	21188	DP690-11	164.48	155.05			0.74949	0.87091	15.959	2	0	Median	14225000	8264200	5960800	8949	1993	8436	17741;17742	43348;43349;43350;43351;43352;43353	43348		6	9606
LLVPTQFVGAIIGK	1	0	Unmodified	1454.8861	0.88608645	84	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	8	4				1								1					22.542	22.542	2	2.9274E-05	18958	DP690-12	130.94	0			0.9864	1.1147	6.9274	2	0	Median	17442000	8982600	8459000	8950	84	8437	17743;17744	43354;43355;43356;43357;43358;43359;43360;43361	43357		8	9606
LLVQHEINTLR	0	1	Unmodified	1334.767	0.76703394	808;16	P49792;O14715;Q99666;A6NKT7;Q7Z3J3	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	no	no	0	0	0	10	0.816									1	1	1						14.35	14.35	3	9.848E-05	8576	DP690-10	126.03	101.67			0.94796	1.0977	32.337	3	0	Plateau	475120000	241980000	233130000	8951	808;16	8438	17745;17746;17747	43362;43363;43364;43365;43366;43367	43364		5	9606
LLVSASQDGK	1	0	Unmodified	1016.5502	0.55022446	1001;999	P62873;P16520;P62879;Q9HAV0	GNB1;GNB3;GNB2;GNB4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4	no	no	0	0	0	14	0														1			11.783	11.783	2	0.0001409	4470	DP690-14	137.13	87.707			0.46789	0.54836	NaN	1	0	Median	181980000	120120000	61858000	8952	999;1001	8439	17748	43368;43369	43369		2	9606
LLVSGFWGVAR	0	1	Unmodified	1203.6764	0.67642802	2315	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	11.5	2.5									1					1			20.34	20.34	2	0.00021973	16059	DP690-14	156.75	134.52			0.81898	0.99272	NaN	1	0	Median	38986000	22351000	16635000	8953	2315	8440	17749;17750	43370;43371;43372;43373;43374	43371		5	9606
LLVTDMSDAEQYR	0	1	Oxidation (M)	1555.7188	0.7188227	119	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	1	0	5	0					1												14.912	14.912	2	0.00019405	7940	DP690-5	139.86	120.1			1.3555	1.4155	NaN	1	0	Median	44042000	21386000	22656000	8954	119	8441	17751	43375;43376	43375	129	2	9606
LLVTDMSDAEQYR	0	1	Unmodified	1539.7239	0.72390808	119	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	5	0					1												17.438	17.438	2	0.051805	11035	DP690-5	85.958	51.58			NaN	NaN	NaN	0	0	Median	22898000	22898000	0	8955	119	8441	17752	43377	43377		1	9606
LLVVDPETDEHFKR	1	1	Unmodified	1696.8784	0.87843489	1339	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	yes	yes	0	0	1	14	0														1			14.398	14.398	4	9.0519E-06	8045	DP690-14	124.38	106.59			0.67871	0.79496	NaN	1	0	Median	108740000	64524000	44212000	8956	1339	8442	17753	43378;43379	43378		2	9606
LLWGLEGLPLTVSAVQGAHPVLR	0	1	Unmodified	2425.3846	0.3845501	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	10	1									1		1						22.343	22.343	3	5.1514E-20	19648	DP690-11	181.86	174.5			0.64	0.78418	10.549	2	0	Median	82498000	50661000	31837000	8957	2127	8443	17754;17755	43380;43381;43382;43383	43380		4	9606
LLYEANLPENFR	0	1	Unmodified	1477.7565	0.75652884	1623	Q8IYB5	SMAP1	Stromal membrane-associated protein 1	yes	yes	0	0	0	9.33	3.77				1								2					18.499	18.499	2	1.2543E-07	12946	DP690-4	199.33	142.42			1.0519	1.2108	44.456	2	0	Median	70908000	40038000	30870000	8958	1623	8444	17756;17757;17758	43384;43385;43386;43387;43388;43389;43390	43389		7	9606
LLYNNVSNFGR	0	1	Unmodified	1295.6622	0.66223452	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	10	0										1							16.525	16.525	2	0.0012617	11844	DP690-10	104.42	77.731			0.86729	1.0593	NaN	1	0	Median	159490000	91879000	67609000	8959	1075	8445	17759	43391;43392	43391		2	9606
LLYNRPGTVSSLK	1	1	Unmodified	1446.8195	0.81946344	674	P35659	DEK	Protein DEK	yes	yes	0	0	1	13.3	0.471													2	1			13.378	13.378	2;3	0.00019093	6531	DP690-13	132.17	99.565			0.69509	0.73773	8.8697	3	0	Median	372080000	216850000	155240000	8960	674	8446	17760;17761;17762	43393;43394;43395;43396;43397	43396		5	9606
LLYNRPGTVSSLKK	2	1	Unmodified	1574.9144	0.91442646	674	P35659	DEK	Protein DEK	yes	yes	0	0	2	13	0													1				11.751	11.751	3	0.06131	4379	DP690-13	49.929	38.008			0.74306	0.82038	NaN	1	0	Median	84415000	49254000	35160000	8961	674	8447	17763	43398;43399	43398		2	9606
LLYVTPEK	1	0	Unmodified	961.54843	0.54843354	885	P54132	BLM	Bloom syndrome protein	yes	yes	0	0	0	11	0											1						14.123	14.123	2	0.0033817	8045	DP690-11	130.04	0			NaN	NaN	NaN	0	0	Median	121310000	0	121310000	8962	885	8448	17764	43400;43401	43401		2	9606
LMAMQRPGPYDR	0	2	Oxidation (M)	1449.6857	0.68568885	639;901	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	1	1	13	0													2				11.36	11.36	3	0.0099597	3276	DP690-13	68.847	54.883			0.71392	0.81973	32.611	2	0	Median	61640000	35142000	26499000	8963	639;901	8449	17765;17766	43402;43403;43404;43405	43403	888;889	4	9606
LMAPYTPFLTELMYQNLK	1	0	2 Oxidation (M)	2204.0897	0.08974957	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	2	0	6.5	3.5			1							1							22.085	22.085	2	0.0028441	17590	DP690-3	83.047	83.047			0.60706	0.68171	39.767	2	0	Median	12941000	8542900	4398300	8964	721	8450	17767;17768	43406;43407;43408	43408	1057;1058	3	9606
LMAVPNLFMLETVDSVK	1	0	2 Oxidation (M)	1937.9842	0.98422187	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	2	0	7	0							1										21.471	21.471	2	0.00024666	16253	DP690-7	117.27	85.206			0.76467	0.81716	NaN	1	0	Median	76334000	42008000	34326000	8965	296	8451	17769	43409;43410;43411;43412	43410	309;310	4	9606
LMAVPNLFMLETVDSVK	1	0	Oxidation (M)	1921.9893	0.98930724	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	1	0	7	0							1										22.646	22.646	2	0.0007358	17616	DP690-7	105.78	63.228			0.68868	0.74726	NaN	1	0	Median	7752000	4658300	3093800	8966	296	8451	17770	43413;43414	43414	309;310	2	9606
LMDHGQSHPEDIDMYSTR	0	1	2 Oxidation (M)	2162.8997	0.89971697	1509	Q6UXV4	APOOL	MICOS complex subunit MIC27	yes	yes	0	2	0	15	0															1		11.715	11.715	4	0.027138	4375	DP690-15	49.463	36.614			0.67325	0.78111	NaN	1	0	Median	19564000	12110000	7453800	8967	1509	8452	17771	43415;43416	43416	2194;2195	2	9606
LMDMGMLLPGHR	0	1	3 Oxidation (M)	1417.6516	0.65161153	1907	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	3	0	16	0																1	14.416	14.416	3	0.018132	7772	DP690-16	55.806	19.806			0.83628	0.93764	NaN	1	0	Median	60456000	30657000	29800000	8968	1907	8453	17772	43417;43418	43418	2444;2445;2446	2	9606
LMDVGLIAIR	0	1	Oxidation (M)	1115.6373	0.63726532	642	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	1	0	4	0				1													18.057	18.057	2	0.0012165	12432	DP690-4	111.95	68.139			0.96335	1.1215	NaN	1	0	Median	9820600	5549100	4271400	8969	642	8454	17773	43419;43420;43421;43422;43423	43421	898	5	9606
LMEEIMSEK	1	0	2 Oxidation (M)	1140.5043	0.50426182	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	2	0	12	0												1					10.965	10.965	2	0.00048678	3422	DP690-12	158.07	102.57			0.85862	0.98508	NaN	1	0	Median	129920000	66389000	63531000	8970	517	8455	17774	43424;43425;43426;43427	43425	654;655	4	9606
LMEEIMSEK	1	0	Oxidation (M)	1124.5093	0.5093472	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	0	12	0												1					13.318	13.318	2	0.0053216	6632	DP690-12	107.01	44.9			0.85411	0.94798	NaN	1	0	Median	216550000	116060000	100500000	8971	517	8455	17775	43428;43429	43428	654;655	2	9606
LMEEIMSEK	1	0	Unmodified	1108.5144	0.51443258	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	12	0												1					15.791	15.791	2	0.00011861	10152	DP690-12	171.53	120.34			0.82495	0.95852	NaN	1	0	Median	106850000	57717000	49134000	8972	517	8455	17776	43430;43431;43432;43433	43433		4	9606
LMEEIMSEKENK	2	0	Oxidation (M)	1495.6898	0.68983076	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	1	12	0												2					11.685	11.685	2;3	1.9143E-05	4171	DP690-12	142.12	104.18			0.78949	0.89748	6.3199	2	0	Median	277750000	154270000	123490000	8973	517	8456	17777;17778	43434;43435;43436;43437;43438;43439;43440;43441;43442	43437	654;655	9	9606
LMEEIMSEKENK	2	0	2 Oxidation (M)	1511.6847	0.68474538	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	2	1	12	0												1					11.718	11.718	3	0.0022152	4440	DP690-12	77.74	37.586			0.78344	0.9024	NaN	1	0	Median	49206000	28693000	20513000	8974	517	8456	17779	43443;43444	43444	654;655	2	9606
LMEEIMSEKENK	2	0	Unmodified	1479.6949	0.69491614	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	12	0												2					13.839	13.839	2;3	3.7165E-09	7387	DP690-12	232.88	178.16			0.79722	0.90105	5.0423	2	0	Median	339400000	182560000	156850000	8975	517	8456	17780;17781	43445;43446;43447;43448;43449;43450;43451	43450		7	9606
LMEPIYLVEIQCPEQVVGGIYGVLNR	0	1	Unmodified	2988.5453	0.54528578	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	11	0											1						25.724	25.724	2	6.3287999999999996E-21	23724	DP690-11	177.88	143.45			NaN	NaN	NaN	0	0	Median	729330	729330	0	8976	483	8457	17782	43452;43453	43453		2	9606
LMESNINSLR	0	1	Oxidation (M)	1191.5918	0.59177169	2548				yes	yes	0	1	0	4	0				1													22.638	22.638	2	0.033661	17537	DP690-4	74.127	34.126	+		0.67188	0.7438	NaN	1	0	Median	848390	490050	358340	8977	2548	8458	17783	43454	43454	2976	1	9606
LMFEELR	0	1	Oxidation (M)	952.4688	0.46880301	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	1	0	12	0												1					16.096	16.096	2	0.063959	10540	DP690-12	95.793	38.691			NaN	NaN	NaN	0	0	Median	69712000	69712000	0	8978	2475	8459	17784	43455	43455		1	9606
LMFSSVNSNLQR	0	1	Oxidation (M)	1410.6925	0.69254837	2249	Q9NX47	MARCH5	E3 ubiquitin-protein ligase MARCH5	yes	yes	0	1	0	15	0															1		15.309	15.309	2	0.0030333	9220	DP690-15	96.665	42.89			0.87053	1.0062	NaN	1	0	Median	12332000	6784600	5547400	8979	2249	8460	17785	43456	43456	2716	1	9606
LMILPDPEKPVR	1	1	Oxidation (M)	1422.7905	0.7904715	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	1	1	10	0										1							15.441	15.441	3	0.0023955	10367	DP690-10	81.92	70.749			0.58927	0.73012	NaN	1	0	Median	97307000	55739000	41568000	8980	13	8461	17786	43457;43458;43459	43459	15	3	9606
LMIVEQQSLIK	1	0	Oxidation (M)	1316.7374	0.7373733	2533				yes	yes	0	1	0	11.7	0.471											1	2					26.222	26.222	2	0.0077634	23873	DP690-11	88.819	66.239	+		1.1001	1.2648	16.802	3	0	Median	7071800	3492200	3579600	8981	2533	8462	17787;17788;17789	43460;43461;43462;43463	43461	2965	4	9606
LMLLLEVISGER	0	1	Unmodified	1371.7796	0.77957246	476;186	P12814;P35609;Q08043;O43707	ACTN1;ACTN2;ACTN3;ACTN4	Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-4	no	no	0	0	0	11	0											2						24.045	24.045	2	0.012813	21815	DP690-11	84.17	57.281			1.2158	1.4452	NaN	1	0	Median	2588700	1257900	1330800	8982	476;186	8463	17790;17791	43464;43465;43466;43467	43465		4	9606
LMNDMTAVALNYGIYK	1	0	2 Oxidation (M)	1847.8798	0.87975679	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	2	0	3	0			1														17.535	17.535	2	1.246E-06	12007	DP690-3	144.1	124.01			1.0545	1.1277	NaN	1	0	Median	14285000	7097700	7187300	8983	1778	8464	17792	43468;43469	43468	2339;2340	2	9606
LMNFMYFQR	0	1	2 Oxidation (M)	1280.5682	0.56819948	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	2	0	3	0			1														16.532	16.532	2	0.082759	10703	DP690-3	65.038	44.168			1.1727	1.3407	NaN	1	0	Median	14025000	7519800	6505000	8984	1531	8465	17793	43470	43470		1	9606
LMPPDSTTIEK	1	0	Oxidation (M)	1246.6115	0.61150408	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	1	0	2	0		1															13.394	13.394	2	0.036566	5835	DP690-2	87.806	56.503			NaN	NaN	NaN	0	0	Median	2913700	0	2913700	8985	1803	8466	17794	43471	43471	2377	1	9606
LMQITSLHSLNAFLLPIK	1	0	Oxidation (M)	2054.1598	0.15981847	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	1	0	3	0			1														20.957	20.957	3	0.005832	16294	DP690-3	64.89	49.298			0.89694	0.95485	NaN	1	0	Median	12267000	6737100	5530000	8986	813	8467	17795	43472;43473;43474	43472	1224	3	9606
LMQQLLESDKYAER	1	1	Oxidation (M)	1738.856	0.85598488	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	1	1	10	0										1							13.836	13.836	3	8.7829E-06	7823	DP690-10	129.37	110.96			0.97954	1.1953	NaN	1	0	Median	122050000	56120000	65928000	8987	1782	8468	17796	43475;43476	43475	2345	2	9606
LMQQLLESDKYAER	1	1	Unmodified	1722.8611	0.86107026	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	10	0										1							15.94	15.94	3	1.0252E-05	10944	DP690-10	126.32	97.104			0.86225	1.0675	NaN	1	0	Median	98392000	51305000	47087000	8988	1782	8468	17797	43477	43477		1	9606
LMSENTEGSAQAPQLPR	0	1	Oxidation (M)	1843.8734	0.87342586	2488	Q9Y4K4	MAP4K5	Mitogen-activated protein kinase kinase kinase kinase 5	yes	yes	0	1	0	11	0											2						13.925	13.925	2	0.00028392	7867	DP690-11	155.99	94.776			NaN	NaN	NaN	0	0	Median	8238300	0	8238300	8989	2488	8469	17798;17799	43478;43479	43479	2926	2	9606
LMSNALSTVTR	0	1	Oxidation (M)	1207.6231	0.62307182	2273	Q9NZJ7	MTCH1	Mitochondrial carrier homolog 1	yes	yes	0	1	0	14	0														1			13.572	13.572	2	0.0048424	6915	DP690-14	92.239	59.427			0.75219	0.91127	NaN	1	0	Median	39882000	18608000	21274000	8990	2273	8470	17800	43480;43481	43480	2727	2	9606
LMSSLPNFCGIFNHLER	0	1	Oxidation (M)	2049.9765	0.97645115	1912	Q96PU8	QKI	Protein quaking	yes	yes	0	1	0	14	0														1			20.54	20.54	3	0.00027397	16302	DP690-14	99.711	88.912			1.0611	1.2868	NaN	1	0	Median	23439000	10365000	13074000	8991	1912	8471	17801	43482;43483;43484	43482	2453	3	9606
LMSSLPNFCGIFNHLER	0	1	Unmodified	2033.9815	0.98153652	1912	Q96PU8	QKI	Protein quaking	yes	yes	0	0	0	14	0														1			21.224	21.224	3	0.0011695	17164	DP690-14	76.051	55.872			0.83812	1.0315	NaN	1	0	Median	13624000	7269600	6354400	8992	1912	8471	17802	43485;43486	43486		2	9606
LMTIMDSMNDQELDSTDGAK	1	0	3 Oxidation (M)	2261.9338	0.93377879	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	3	0	13	0													1				14.343	14.343	2	2.6385E-17	7891	DP690-13	202.25	193.86			0.56832	0.65573	NaN	1	0	Median	14902000	7135100	7767200	8993	934	8472	17803	43487;43488;43489;43490	43490	1449;1450;1451	4	9606
LMTQAQLEEATR	0	1	Unmodified	1389.6922	0.69221402	1050	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	14	0														1			15.226	15.226	2	0.0018146	9236	DP690-14	119.22	119.22			0.91065	1.1039	NaN	1	0	Median	36505000	18407000	18098000	8994	1050	8473	17804	43491	43491		1	9606
LMVALAK	1	0	Oxidation (M)	760.4517	0.45169638	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	1	0	10	4						1								1			12.916	12.916	1	0.018245	5621	DP690-6	98.03	58.812			0.88553	1.0457	0.47351	2	0	Median	73628000	39509000	34118000	8995	404	8474	17805;17806	43492;43493	43493	436	0	9606
LMVEPLQAILIR	0	1	Oxidation (M)	1410.8269	0.82685701	1228	Q13617	CUL2	Cullin-2	yes	yes	0	1	0	3	0			1														21.1	21.1	2	0.0041716	16465	DP690-3	114.97	67.263			NaN	NaN	NaN	0	0	Median	10029000	0	10029000	8996	1228	8475	17807	43494;43495	43494	1878	2	9606
LMVQAVNQR	0	1	Oxidation (M)	1073.5652	0.56516301	1758	Q8WX93	PALLD	Palladin	yes	yes	0	1	0	8.5	3.28			1						1		2						11.512	11.512	2	0.0055654	4287	DP690-11	106.42	75.342			0.8347	0.97906	11.792	3	0	Median	236710000	124440000	112280000	8997	1758	8476	17808;17809;17810;17811	43496;43497;43498;43499;43500;43501;43502;43503;43504	43498	2329	9	9606
LMVQAVNQR	0	1	Unmodified	1057.5702	0.57024839	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	11	0											1						12.699	12.699	2	0.00077295	6023	DP690-11	134.66	79.877			0.92325	1.025	NaN	1	0	Median	303410000	154760000	148650000	8998	1758	8476	17812	43505;43506;43507;43508	43506		4	9606
LNAEENDKLYK	2	0	Unmodified	1335.667	0.66704513	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	1	9	0									1								11.187	11.187	3	0.0012843	3597	DP690-9	91.701	39.939			0.97253	1.1758	NaN	1	0	Median	8477000	4667700	3809300	8999	1762	8477	17813	43509;43510;43511;43512	43509		4	9606
LNAIYQNNLTK	1	0	Unmodified	1290.6932	0.6932003	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	4	0				1													14.503	14.503	2	0.00010706	7859	DP690-4	163.64	129.68			0.84371	0.8794	NaN	1	0	Median	156180000	86339000	69845000	9000	353	8478	17814	43513;43514;43515;43516	43516		4	9606
LNCAAEDFYSR	0	1	Unmodified	1344.5768	0.57684991	2138	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	4	0				1													14.956	14.956	2	0.0018954	8516	DP690-4	98.943	71.118			0.92061	1.0691	NaN	1	0	Median	6514000	3328500	3185600	9001	2138	8479	17815	43517	43517		1	9606
LNCQVIGASVDSHFCHLAWVNTPK	1	0	Unmodified	2752.3214	0.32137427	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	7	0							2										18.102	18.102	3;4	2.141E-10	12199	DP690-7	150.91	131.77			0.93075	0.97015	NaN	1	0	Median	533830000	265710000	268120000	9002	1128	8480	17816;17817	43518;43519;43520;43521;43522	43520		5	9606
LNDLEDALQQAK	1	0	Unmodified	1356.6885	0.68850885	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	6.2	5.19	1	1		1					1						1		17.415	17.415	2	4.4131999999999994E-46	8832	DP690-1	260.76	181.28		+	NaN	NaN	NaN	0	0	Median	92769000	92769000	0	9003	369	8481	17818;17819;17820;17821;17822	43523;43524;43525;43526;43527;43528;43529;43530;43531;43532	43524		10	9606
LNDLEDALQQAKEDLAR	1	1	Unmodified	1940.9803	0.98033378	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	5.88	4.86	2	1	1				1	1	1							1	20.734	20.734	2;3	2.2062E-26	15743	DP690-9	213.83	141.17		+	NaN	NaN	NaN	0	0	Median	44328000	44328000	0	9004	369	8482	17823;17824;17825;17826;17827;17828;17829;17830	43533;43534;43535;43536;43537;43538;43539;43540;43541;43542;43543;43544;43545;43546;43547;43548	43547		16	9606
LNDLEEALQQAK	1	0	Unmodified	1370.7042	0.70415892	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.33	1.25	1	1		1													17.923	17.923	2	2.0699E-11	12245	DP690-4	227.27	141.13		+	NaN	NaN	NaN	0	0	Median	16283000	16283000	0	9005	44	8483	17831;17832;17833	43549;43550;43551;43552;43553	43552		5	9606
LNDMASTDDGTLQSR	0	1	Oxidation (M)	1638.7155	0.71552824	2129	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	1	0	4	0				1													12.129	12.129	2	4.162E-05	4757	DP690-4	157.03	134			0.87452	1.0119	NaN	1	0	Median	4586200	2016300	2569900	9006	2129	8484	17834	43554;43555;43556;43557	43557	2627	4	9606
LNDYIFSFDK	1	0	Unmodified	1260.6027	0.60265396	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	10	3.46				1								3					19.843	19.843	2	0.00010531	14541	DP690-4	143.04	112.35			1.207	1.3139	NaN	1	0	Median	37764000	4690200	33074000	9007	886	8485	17835;17836;17837;17838	43558;43559;43560;43561;43562;43563;43564;43565;43566	43565		9	9606
LNEAAAGLNQAATELVQASR	0	1	Unmodified	2026.0443	0.044331016	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															20.272	20.272	2	1.6468E-09	13758	DP690-2	147.7	125.37			1.9518	1.9981	NaN	1	0	Median	1804400	590960	1213400	9008	2482	8486	17839	43567;43568;43569	43567		3	9606
LNEAQPSTIATSMR	0	1	Oxidation (M)	1533.7457	0.74570615	907	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	1	0	11	4							1								1		12.599	12.599	2	0.00055471	5522	DP690-15	110.08	78.443			0.88954	1.0243	13.311	2	0	Median	55272000	28087000	27185000	9009	907	8487	17840;17841	43570;43571;43572;43573;43574;43575;43576	43571	1402	7	9606
LNEESGALLQCALLYTSCAGQR	0	1	Unmodified	2453.1679	0.16789332	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	11	0											1						21.825	21.825	2	0.0013823	19017	DP690-11	149	107.63			NaN	NaN	NaN	0	0	Median	0	0	0	9010	883	8488	17842	43577	43577		1	9606
LNEGVVEFASYGDLK	1	0	Unmodified	1639.8094	0.80935227	1193	Q13243	SRSF5	Serine/arginine-rich splicing factor 5	yes	yes	0	0	0	14	0														1			19.109	19.109	2	0.0075102	14433	DP690-14	125.03	79.031			NaN	NaN	NaN	0	0	Median	0	0	0	9011	1193	8489	17843	43578	43578		1	9606
LNEIVGNEDTVSR	0	1	Unmodified	1444.7158	0.71578623	663	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	8	3.46						3								1			13.937	13.937	2	1.0589E-10	7405	DP690-14	233.13	191.71			0.85828	1.0116	NaN	1	0	Median	141220000	67409000	73815000	9012	663	8490	17844;17845;17846;17847	43579;43580;43581;43582;43583;43584;43585;43586	43581		8	9606
LNEQEGVPSVFNPPPSRPLQVNTADHR	0	2	Unmodified	2997.5057	0.50568088	1834	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	1	13	0													1				16.195	16.195	4	0.0019696	10403	DP690-13	56.292	56.292			0.47769	0.54849	NaN	1	0	Median	74153000	47414000	26740000	9013	1834	8491	17848	43587;43588	43588		2	9606
LNEQHQLILSK	1	0	Unmodified	1321.7354	0.73539946	1623	Q8IYB5	SMAP1	Stromal membrane-associated protein 1	yes	yes	0	0	0	6.67	3.77				2								1					12.475	12.475	2;3	2.732E-05	5207	DP690-4	187.16	147.31			0.83498	0.88468	12.092	3	0	Median	119580000	62481000	57096000	9014	1623	8492	17849;17850;17851	43589;43590;43591;43592;43593;43594;43595;43596;43597	43596		9	9606
LNEQQSVLQR	0	1	Unmodified	1213.6415	0.64149908	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							12.638	12.638	2	7.4349E-05	5950	DP690-10	195.17	146.61			0.77331	0.95452	NaN	1	0	Median	126340000	68795000	57546000	9015	1285	8493	17852	43598;43599;43600	43598		3	9606
LNESTFDTQITK	1	0	Unmodified	1395.6882	0.6881745	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	5.5	3.5		1							1								15.271	15.271	2	7.8945E-05	8055	DP690-2	150.1	121.15			0.90433	0.94137	21.647	2	0	Median	194890000	104970000	89919000	9016	1046	8494	17853;17854	43601;43602;43603;43604;43605;43606;43607	43602		7	9606
LNESTFDTQITKK	2	0	Unmodified	1523.7831	0.78313752	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.25	0.433									3	1							13.543	13.543	2;3	1.3885E-05	7385	DP690-10	130.69	102.25			0.55228	0.65058	22.238	3	0	Plateau	234370000	140500000	93876000	9017	1046	8495	17855;17856;17857;17858	43608;43609;43610;43611;43612;43613;43614;43615;43616	43608		9	9606
LNFSHGTHEYHAETIK	1	0	Unmodified	1882.8962	0.89621022	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	6	3.46				3								1					11.411	11.411	3;4;5	0.00027463	3982	DP690-12	106.42	91.029			1.0031	1.0555	5.6673	4	0	Median	439560000	220440000	219120000	9018	488	8496	17859;17860;17861;17862	43617;43618;43619;43620;43621;43622;43623;43624;43625;43626;43627;43628	43620		12	9606
LNFSTPTSTNIVSVCR	0	1	Unmodified	1794.8934	0.89343302	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	3	0			2														17.781	17.781	2	0.001228	12289	DP690-3	145.83	101.88			NaN	NaN	NaN	0	0	Median	0	0	0	9019	134	8497	17863;17864	43629;43630	43629		2	9606
LNGTDPEDVIR	0	1	Unmodified	1227.6095	0.60953025	123	O14950;P19105;P24844	MYL12B;MYL12A;MYL9	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9	yes	no	0	0	0	8	0								2									14.977	14.977	2	0.0064937	8103	DP690-8	112.3	61.103			NaN	NaN	NaN	0	0	Median	5268200	2820100	2448200	9020	123	8498	17865;17866	43631;43632	43631		2	9606
LNHQAELLLK	1	0	Unmodified	1177.6819	0.68190733	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	15	0															1		15.633	15.633	3	0.058012	9650	DP690-15	36.318	19.151			0.86172	1.0109	NaN	1	0	Median	7830300	4303100	3527200	9021	1102	8499	17867	43633	43633		1	9606
LNIAHMKIDGQYGSR	1	1	Oxidation (M)	1717.857	0.85698794	2539				yes	yes	0	1	1	16	0																1	13.823	13.823	3	0.04062	7104	DP690-16	49.929	34.294	+		0.73034	0.83453	NaN	1	0	Median	11937000	7086400	4850600	9022	2539	8500	17868	43634	43634	2967	1	9606
LNIISNLDCVNEVIGIR	0	1	Unmodified	1941.0353	0.035346234	624	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	no	0	0	0	4	0				1													22.525	22.525	2	0.064906	17429	DP690-4	81.565	45.791			NaN	NaN	NaN	0	0	Median	353120	0	353120	9023	624	8501	17869	43635	43635		1	9606
LNILDTLSK	1	0	Unmodified	1015.5914	0.59136099	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	3	0			1														19.118	19.118	2	0.00018055	14002	DP690-3	185.72	92.523			1.4322	1.5273	NaN	1	0	Median	26216000	10417000	15799000	9024	1190	8502	17870	43636;43637;43638;43639	43638		4	9606
LNIPVSQVNPR	0	1	Unmodified	1235.6986	0.69862003	379	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	yes	no	0	0	0	11	0											2						15.283	15.283	2	0.0026674	9777	DP690-11	128.86	66.895			NaN	NaN	NaN	0	0	Median	0	0	0	9025	379	8503	17871;17872	43640;43641	43640		2	9606
LNISFPATGCQK	1	0	Unmodified	1334.6653	0.66527099	989	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	15	0															1		16.667	16.667	2	1.5884E-08	10894	DP690-15	211.64	186.07			0.91519	1.0255	NaN	1	0	Median	106510000	54203000	52306000	9026	989	8504	17873	43642;43643;43644;43645	43642		4	9606
LNITSLQFK	1	0	Unmodified	1062.6073	0.6073454	1386	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	yes	yes	0	0	0	14	0														1			18.158	18.158	2	0.0065931	13177	DP690-14	93.374	67.752			0.77058	0.92348	NaN	1	0	Median	22101000	12268000	9833400	9027	1386	8505	17874	43646	43646		1	9606
LNKLEDTITLIK	2	0	Unmodified	1399.8286	0.82863115	214	O60678	PRMT3	Protein arginine N-methyltransferase 3	yes	yes	0	0	1	4	0				1													17.012	17.012	3	0.0026254	11144	DP690-4	81.709	61.866			1.0224	1.0541	NaN	1	0	Median	9952200	4846700	5105400	9028	214	8506	17875	43647;43648	43647		2	9606
LNLDSIIGR	0	1	Unmodified	999.57129	0.57129425	963	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	10	4						1								1			19.193	19.193	2	0.00075779	13058	DP690-6	135.77	77.162			3.959	4.6067	214.84	2	0	Median	81029000	33756000	47273000	9029	963	8507	17876;17877	43649;43650;43651;43652	43652		4	9606
LNLEAINYMAADGDFK	1	0	Oxidation (M)	1799.84	0.84000047	433	P09382	LGALS1	Galectin-1	yes	yes	0	1	0	12	4								1								1	19.166	19.166	2	1.0301E-06	13695	DP690-16	150.21	111.98			0.75687	0.85603	6.9883	2	0	Median	60010000	34190000	25820000	9030	433	8508	17878;17879	43653;43654;43655;43656;43657;43658;43659;43660	43656	503	8	9606
LNLLHEFLQTEIK	1	0	Unmodified	1596.8875	0.88754301	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							20.514	20.514	3	3.0897E-06	17476	DP690-10	179.67	150.68			0.79874	0.98191	NaN	1	0	Median	45679000	25571000	20108000	9031	591	8509	17880	43661;43662;43663;43664	43661		4	9606
LNLNNTVLSK	1	0	Unmodified	1114.6346	0.63462279	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	2	0		1															15.428	15.428	2	0.015406	8332	DP690-2	76.1	45.413			2.9704	3.0051	NaN	1	0	Median	23683000	6017900	17665000	9032	408	8510	17881	43665;43666	43666		2	9606
LNLQFLTLHDYLLR	0	1	Unmodified	1757.9828	0.98284038	202	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	10	0										1							21.48	21.48	3	0.00042992	18815	DP690-10	97.203	97.203			0.78338	0.98124	NaN	1	0	Median	42554000	24828000	17726000	9033	202	8511	17882	43667;43668	43667		2	9606
LNLSCIHSPVVNELMR	0	1	Oxidation (M)	1896.955	0.95498742	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	1	0	12	0												1					17.364	17.364	3	0.020613	12325	DP690-12	55.975	36.987			0.95584	1.1354	NaN	1	0	Median	58143000	28633000	29509000	9034	2450	8512	17883	43669	43669	2899	1	9606
LNLVEAFVEDAELR	0	1	Unmodified	1616.841	0.84098675	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	5.67	3.77			2								1						24.575	24.575	2	0.0015304	22368	DP690-11	171.49	112.51			NaN	NaN	NaN	0	0	Median	0	0	0	9035	736	8513	17884;17885;17886	43670;43671;43672	43670		3	9606
LNMILVQILK	1	0	Oxidation (M)	1199.7312	0.73116571	128	O14980	XPO1	Exportin-1	yes	yes	0	1	0	3	0			1														20.188	20.188	2	0.070077	15358	DP690-3	79.713	47.392			NaN	NaN	NaN	0	0	Median	0	0	0	9036	128	8514	17887	43673	43673		1	9606
LNNDDNVDGLLVQLPLPEHIDER	0	1	Unmodified	2627.3191	0.31910889	486	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	yes	0	0	0	11.3	3.77						1								2			21.333	21.333	3	0.00017676	17134	DP690-14	110.14	83.205			4.1029	5.0271	NaN	1	0	Median	17137000	4169300	12968000	9037	486	8515	17888;17889;17890	43674;43675;43676	43675		3	9606
LNNLVLFDK	1	0	Unmodified	1074.6073	0.6073454	995	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	12	4								1								1	18.003	18.003	2	0.00069808	12275	DP690-16	140.11	95.031			1.0676	1.1938	15.656	2	0	Median	149570000	74265000	75303000	9038	995	8516	17891;17892	43677;43678;43679;43680;43681;43682;43683;43684	43680		8	9606
LNPQCIPYTLQNHYYR	0	1	Unmodified	2078.9996	0.99962943	325	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	0	0	13	0													1				17.106	17.106	2	0.0032835	11470	DP690-13	70.942	70.942			0.77025	0.91888	NaN	1	0	Median	100990000	58403000	42591000	9039	325	8517	17893	43685;43686;43687	43686		3	9606
LNPQEYLTSTACR	0	1	Unmodified	1551.7351	0.73514147	1710;1796	Q8TAQ2;Q92922	SMARCC2;SMARCC1	SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1	no	no	0	0	0	10.5	0.5										1	1						16.772	16.772	2	0.00017812	12129	DP690-10	157.75	120.4			0.70728	0.84987	NaN	1	0	Median	245690000	161900000	83787000	9040	1710;1796	8518	17894;17895	43688;43689;43690;43691;43692	43688		5	9606
LNQDQLDAVSK	1	0	Unmodified	1229.6252	0.62518031	1275	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	11	0											1						13.473	13.473	2	0.00011438	7163	DP690-11	157.99	103.27			0.96871	1.1254	NaN	1	0	Median	145760000	80165000	65590000	9041	1275	8519	17896	43693;43694;43695;43696	43693		4	9606
LNQENEHIYNLWCSGR	0	1	Unmodified	2031.9221	0.92210739	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	12	0												1					16.708	16.708	3	2.5335E-05	11405	DP690-12	123.76	112.75			1.1143	1.3128	NaN	1	0	Median	84752000	37552000	47201000	9042	1814	8520	17897	43697;43698;43699;43700	43699		4	9606
LNQLKPGLQYK	2	0	Unmodified	1300.7503	0.75032125	1170	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	1	11	0											1						12.715	12.715	3	0.0010064	5964	DP690-11	93.667	62.319			0.75178	0.85499	NaN	1	0	Median	135490000	65762000	69731000	9043	1170	8521	17898	43701;43702	43701		2	9606
LNQPPEDGISSVK	1	0	Unmodified	1382.7042	0.70415892	185	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	15	0.816														1	1	1	13.352	13.352	2	4.6765E-05	6582	DP690-15	125.74	85.863			0.71369	0.79172	6.8866	3	0	Plateau	563650000	328780000	234870000	9044	185	8522	17899;17900;17901	43703;43704;43705;43706;43707;43708;43709;43710;43711;43712;43713;43714	43710		12	9606
LNQSGTSVGTDEESDVTQEEER	0	1	Unmodified	2409.0415	0.041549641	808;16;446	P49792;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	0	10	0										1							14.075	14.075	2	5.7886E-27	8156	DP690-10	220.34	168.33			NaN	NaN	NaN	0	0	Median	0	0	0	9045	808;16;446	8523	17902	43715	43715		1	9606
LNQSQREELGLIEQAYDNPHEALSR	0	2	Unmodified	2909.4268	0.42676186	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	1	10	0										1							18.186	18.186	4	0.057322	14169	DP690-10	53.481	53.481			0.61898	0.73723	NaN	1	0	Median	62442000	35798000	26644000	9046	1492	8524	17903	43716	43716		0	9606
LNQVCFDDDGTSSPQDR	0	1	Unmodified	1952.817	0.8170332	1643	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	11	0											1						14.719	14.719	2	1.1355E-27	9004	DP690-11	285.83	269.89			0.63788	0.76161	NaN	1	0	Median	46223000	25065000	21157000	9047	1643	8525	17904	43717;43718;43719;43720	43717		4	9606
LNQVELPHWLR	0	1	Unmodified	1403.7674	0.76736829	2335	Q9UG56	PISD	Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain	yes	yes	0	0	0	14	0														1			17.874	17.874	3	0.00044488	12781	DP690-14	120.27	120.27			0.7582	0.91825	NaN	1	0	Median	41998000	22662000	19336000	9048	2335	8526	17905	43721;43722;43723	43722		3	9606
LNQVLVDIR	0	1	Unmodified	1068.6291	0.62914348	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.5	0.5										1	1						16.555	16.555	2	0.00057673	11784	DP690-10	147.29	89.121			0.88553	1.0632	12.879	2	0	Median	313360000	163780000	149580000	9049	2190	8527	17906;17907	43724;43725;43726;43727;43728;43729	43725		6	9606
LNRLPAAGVGDMVMATVK	1	1	2 Oxidation (M)	1873.9754	0.97538851	992	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	2	1	16	0																1	14.379	14.379	3	0.00039902	7704	DP690-16	87.356	61.798			0.87716	0.92196	NaN	1	0	Median	124330000	65093000	59236000	9050	992	8528	17908	43730;43731;43732;43733;43734;43735	43733	1511;1512	6	9606
LNSAECYYPER	0	1	Unmodified	1400.6031	0.60306466	1249	Q14145	KEAP1	Kelch-like ECH-associated protein 1	yes	yes	0	0	0	4	0				1													13.79	13.79	2	0.0092374	7061	DP690-4	79.974	52.15			0.87676	1.0205	NaN	1	0	Median	9491800	3070000	6421800	9051	1249	8529	17909	43736;43737	43737		2	9606
LNSAIIYDR	0	1	Unmodified	1063.5662	0.56620887	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	3	0			1														14.82	14.82	2	0.0033543	8453	DP690-3	106.42	71.067			0.83804	0.96407	NaN	1	0	Median	17298000	9855600	7442100	9052	574	8530	17910	43738;43739	43738		2	9606
LNSHMNALHLGSQANR	0	1	Oxidation (M)	1777.8642	0.86419858	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	1	0	4.5	0.866				3		1											10.564	10.564	3;4	1.5317E-06	2881	DP690-4	131.86	109.25			0.96499	0.97277	6.3584	4	0	Median	1010399999.9999999	514360000	496000000	9053	469	8531	17911;17912;17913;17914	43740;43741;43742;43743;43744;43745;43746	43741	559	7	9606
LNSHMNALHLGSQANR	0	1	Unmodified	1761.8693	0.86928396	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	4	0				2													12.206	12.206	3;4	1.8327E-06	4859	DP690-4	127.07	103.93			0.90723	0.99496	5.7375	2	0	Median	136550000	70297000	66256000	9054	469	8531	17915;17916	43747;43748;43749;43750;43751;43752;43753;43754	43751		8	9606
LNSLAIGLR	0	1	Unmodified	955.58147	0.581465	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	10	1									1		1						16.431	16.431	2	0.0010909	11483	DP690-11	198.73	106.82			0.88069	1.0264	9.265	2	0	Median	408920000	214560000	194360000	9055	891	8532	17917;17918	43755;43756;43757;43758;43759;43760	43755		6	9606
LNSLPSEYESGSACPAQTVHYRPINLSSSENK	1	1	Unmodified	3534.6685	0.66852505	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	1	10	0										1							15.968	15.968	4	9.4675E-09	10953	DP690-10	114.03	102.95			0.77927	0.9692	NaN	1	0	Median	92005000	54435000	37570000	9056	2155	8533	17919	43761;43762;43763	43761		3	9606
LNSNTQVVLLSATMPSDVLEVTKK	2	0	Oxidation (M)	2602.3888	0.38876836	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	1	1	13	0													1				18.879	18.879	3	0.0019969	13971	DP690-13	88.684	51.879			NaN	NaN	NaN	0	0	Median	0	0	0	9057	927	8534	17920	43764	43764	1434	1	9606
LNSVQSSERPLFLVHPIEGSTTVFHSLASR	0	2	Unmodified	3307.7313	0.73132372	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2.33	0.471		2	1														18.397	18.397	4;5	2.9924E-06	11691	DP690-2	109.98	109.98			0.75512	0.7542	9.8081	3	0	Median	120090000	68515000	51577000	9058	789	8535	17921;17922;17923	43765;43766;43767;43768;43769;43770;43771;43772;43773;43774	43770		10	9606
LNTAEDAKDVIK	2	0	Unmodified	1315.6983	0.69834526	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	1	12	0												2					12.579	12.579	3	0.0019721	5580	DP690-12	110.98	46.324			NaN	NaN	NaN	0	0	Median	0	0	0	9059	750	8536	17924;17925	43775;43776	43775		2	9606
LNTQEIFDDWAR	0	1	Unmodified	1506.7103	0.71030693	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									2								20.9	20.9	2	0.0049822	15889	DP690-9	113.93	79.039			NaN	NaN	NaN	0	0	Median	0	0	0	9060	1264	8537	17926;17927	43777;43778	43777		2	9606
LNVAPLAVFQMLK	1	0	Oxidation (M)	1458.8269	0.82685701	1481	Q6P582;Q6NZ67	MZT2A;MZT2B	Mitotic-spindle organizing protein 2A;Mitotic-spindle organizing protein 2B	yes	no	0	1	0	16	0																1	21.686	21.686	2	0.019405	16547	DP690-16	74.173	31.824			0.75196	0.86952	NaN	1	0	Median	1463800	882650	581200	9061	1481	8538	17928	43779	43779	2169	1	9606
LNVGAPDVTLR	0	1	Unmodified	1153.6455	0.64552182	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								16.295	16.295	2	0.050816	10195	DP690-9	61.765	61.765			0.62298	0.77727	NaN	1	0	Median	16795000	8971200	7823700	9062	1145	8539	17929	43780;43781	43780		2	9606
LNVVAFLNELPK	1	0	Unmodified	1355.7813	0.78128702	2324	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	12	0												1					23.425	23.425	2	0.0087048	19929	DP690-12	76.143	35.149			0.75319	0.91361	NaN	1	0	Median	4974900	2659200	2315700	9063	2324	8540	17930	43782;43783	43782		2	9606
LNYSDHDVIK	1	0	Unmodified	1202.5932	0.5931519	1836	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	13	0													1				12.619	12.619	3	0.063692	5437	DP690-13	45.908	32.951			1.2027	1.3963	NaN	1	0	Median	35155000	15232000	19923000	9064	1836	8541	17931	43784	43784		1	9606
LPAAGVGDMVMATVK	1	0	2 Oxidation (M)	1490.7473	0.74728606	992	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	2	0	12	4								1								1	14.474	14.474	2	1.8348E-05	7540	DP690-8	129.74	92.398			0.82341	0.87949	10.423	2	0	Median	692100000	381980000	310120000	9065	992	8542	17932;17933	43785;43786;43787;43788;43789;43790	43789	1511;1512	6	9606
LPAAGVGDMVMATVK	1	0	Oxidation (M)	1474.7524	0.75237144	992	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	1	0	16	0																1	16.691	16.691	2	0.052564	10755	DP690-16	81.709	40.005			NaN	NaN	NaN	0	0	Median	5892600	5892600	0	9066	992	8542	17934	43791	43791	1511;1512	1	9606
LPAAGVGDMVMATVKK	2	0	2 Oxidation (M)	1618.8422	0.84224908	992	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	2	1	16	0																1	13.132	13.132	3	1.4115E-06	6043	DP690-16	132.23	105.87			0.86165	0.96128	NaN	1	0	Median	88801000	48442000	40359000	9067	992	8543	17935	43792;43793;43794;43795	43794	1511;1512	4	9606
LPACVVDCGTGYTK	1	0	Unmodified	1539.7061	0.70614953	940	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	13	0													1				14.743	14.743	2	4.6588E-15	8323	DP690-13	240.85	215.55			0.80914	0.91432	NaN	1	0	Median	138740000	77211000	61526000	9068	940	8544	17936	43796;43797;43798;43799	43798		4	9606
LPAIALDLLR	0	1	Unmodified	1093.6859	0.68593008	1979	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	10	0										1							21.587	21.587	2	0.016536	18967	DP690-10	75.378	25.663			1.0367	1.3032	NaN	1	0	Median	9583000	4524900	5058100	9069	1979	8545	17937	43800	43800		1	9606
LPANHPLLTGQR	0	1	Unmodified	1315.7361	0.73606817	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	8	4				1								1					11.77	11.77	3	0.00030031	4592	DP690-12	106.67	82.413			0.70633	0.82296	3.5953	2	0	Median	97151000	56775000	40375000	9070	694	8546	17938;17939	43801;43802;43803;43804;43805	43801		5	9606
LPAQPSHPHCVNNTYR	0	1	Unmodified	1889.8955	0.89549871	1405	Q53GT1	KLHL22	Kelch-like protein 22	yes	yes	0	0	0	4	0				1													10.416	10.416	4	0.051478	2801	DP690-4	39.427	16.419			5.1229	5.9657	NaN	1	0	Median	10598000	1007600	9590600	9071	1405	8547	17940	43806	43806		1	9606
LPATLTDHHHLLFTFYHVSCQQK	1	0	Unmodified	2792.3857	0.38568909	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										1							16.504	16.504	5	0.077545	11751	DP690-10	24.558	24.558			0.64097	0.79155	NaN	1	0	Median	133320000	84420000	48905000	9072	1901	8548	17941	43807	43807		1	9606
LPATTATPDSSKTEMDSR	1	1	Oxidation (M)	1922.8891	0.88913551	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	1	1	13	0													1				10.557	10.557	3	0.0057497	2894	DP690-13	93.738	82.148			0.93323	1.1347	NaN	1	0	Median	32330000	17022000	15308000	9073	1823	8549	17942	43808	43808	2403	0	9606
LPAVSSVACGASVGYAVTK	1	0	Unmodified	1835.9451	0.94513424	531	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	13	0													2				17.264	17.264	2	4.8987E-18	11809	DP690-13	255.39	213.57			0.75919	0.87778	NaN	1	0	Median	57014000	35770000	21244000	9074	531	8550	17943;17944	43809;43810;43811;43812	43810		4	9606
LPDAHSDYAR	0	1	Unmodified	1143.5309	0.530886	1910	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	12	0												1					10.678	10.678	3	0.034871	3147	DP690-12	54.784	39.194			0.79578	0.97222	NaN	1	0	Median	6000000	3149100	2850900	9075	1910	8551	17945	43813	43813		1	9606
LPDGFTQLR	0	1	Unmodified	1045.5556	0.55564418	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										2							16.464	16.464	2	0.018488	11666	DP690-10	124.08	70.729			NaN	NaN	NaN	0	0	Median	0	0	0	9076	1254	8552	17946;17947	43814;43815	43815		2	9606
LPDGSSFTNQFPSDAPLEEAR	0	1	Unmodified	2277.055	0.054955282	1776	Q92575	UBXN4	UBX domain-containing protein 4	yes	yes	0	0	0	12	0												1					19.277	19.277	2	0.00090168	14899	DP690-12	137.39	111.66			NaN	NaN	NaN	0	0	Median	0	0	0	9077	1776	8553	17948	43816	43816		1	9606
LPDGTSLTQTFR	0	1	Unmodified	1334.683	0.68302954	1109	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	0	0	0	6	0						1											17.093	17.093	2	0.00028986	10607	DP690-6	130.98	101.83			0.54577	0.61734	NaN	1	0	Median	18946000	10442000	8504200	9078	1109	8554	17949	43817;43818;43819;43820	43818		4	9606
LPDGYEFK	1	0	Unmodified	967.4651	0.46509784	433	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	8	0								1									15.29	15.29	2	0.04996	8347	DP690-8	108.09	69.954			0.76393	0.77497	NaN	1	0	Median	239560000	130840000	108720000	9079	433	8555	17950	43821	43821		0	9606
LPDIFSVYFR	0	1	Unmodified	1255.6601	0.66010926	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	6	4		1								1							22.961	22.961	2	0.00015838	20568	DP690-10	134.48	94.832			0.73353	0.82905	11.663	2	0	Median	9457900	6080000	3378000	9080	1282	8556	17951;17952	43822;43823;43824;43825;43826;43827;43828;43829	43823		8	9606
LPDMLNAEIVLGNVQNAK	1	0	Oxidation (M)	1954.0194	0.019361819	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	10	0										1							19.928	19.928	2	2.0118E-22	16639	DP690-10	225.72	225.72			0.58899	0.72407	NaN	1	0	Median	46883000	29871000	17012000	9081	269	8557	17953	43830;43831	43830	272	2	9606
LPDMLNAEIVLGNVQNAK	1	0	Unmodified	1938.0244	0.024447197	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							21.492	21.492	2	0.00010086	18903	DP690-10	120.6	120.6			0.13504	0.16517	NaN	1	0	Median	27517000	24522000	2994900	9082	269	8557	17954	43832;43833	43832		2	9606
LPDVYGVFQFK	1	0	Unmodified	1311.6863	0.68632401	699	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	13	0													1				21.142	21.142	2	0.0057885	16973	DP690-13	86.67	58.493			1.1581	1.3062	NaN	1	0	Median	6251500	2624700	3626700	9083	699	8558	17955	43834;43835	43835		2	9606
LPEAAFLAR	0	1	Unmodified	986.55492	0.5549159	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	3.5	0.5			1	1													16.93	16.93	2	0.0071102	10955	DP690-4	92.47	40.068			1.6922	1.9562	NaN	1	0	Median	38730000	1580400	37150000	9084	670	8559	17956;17957	43836;43837;43838	43838		3	9606
LPECGSGDGSLQPPR	0	1	Unmodified	1568.7253	0.72530506	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	11	0											1						13.813	13.813	2	2.4267E-05	7637	DP690-11	155.99	134			1.0437	1.2603	NaN	1	0	Median	22676000	13530000	9145700	9085	83	8560	17958	43839;43840	43839		2	9606
LPEDPLLSGLLDSPALK	1	0	Unmodified	1776.9873	0.98731663	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	4.25	3.34		2	1							1							23.424	23.424	2	1.0313E-12	16891	DP690-2	205.31	205.31			0.63003	0.6518	7.4222	2	0	Median	55175000	33909000	21266000	9086	789	8561	17959;17960;17961;17962	43841;43842;43843;43844;43845;43846;43847;43848;43849;43850;43851;43852	43847		12	9606
LPEGDLGKEIEQK	2	0	Unmodified	1454.7617	0.76167379	1021	P63241;Q6IS14	EIF5A;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	0	1	16	0																1	14.101	14.101	3	0.00015093	7385	DP690-16	110.8	110.8			0.66922	0.75768	NaN	1	0	Median	29231000	18035000	11196000	9087	1021	8562	17963	43853;43854	43853		2	9606
LPEGHVPEGAGLK	1	0	Unmodified	1302.6932	0.6932003	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	0	9	0									1								12.577	12.577	3	0.011053	5297	DP690-9	65.495	23.918			0.6729	0.79162	NaN	1	0	Median	53164000	32237000	20927000	9088	1602	8563	17964	43855;43856	43855		2	9606
LPESNQTLLR	0	1	Unmodified	1169.6404	0.64043645	2005	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	3	0			1														14.242	14.242	2	0.052525	7731	DP690-3	86.67	39.096			NaN	NaN	NaN	0	0	Median	7490200	0	7490200	9089	2005	8564	17965	43857	43857		1	9606
LPETNLFETEETR	0	1	Unmodified	1577.7573	0.7573167	1316	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	4	0				1													17.605	17.605	2	0.0049914	11870	DP690-4	117.09	84.052			NaN	NaN	NaN	0	0	Median	2469800	2469800	0	9090	1316	8565	17966	43858;43859	43858		2	9606
LPEYNPR	0	1	Unmodified	887.45012	0.45011648	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	13	0													1				12.37	12.37	2	0.010156	5048	DP690-13	126.68	66.317			NaN	NaN	NaN	0	0	Median	50629000	50629000	0	9091	2298	8566	17967	43860	43860		1	9606
LPFAAAQIGNSFR	0	1	Unmodified	1390.7357	0.73573382	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3.5	0.5			1	1													18.788	18.788	2	2.1045E-05	13550	DP690-3	179.42	158.05			0.84969	0.93997	6.8365	2	0	Median	131770000	72743000	59031000	9092	720	8567	17968;17969	43861;43862;43863	43862		3	9606
LPFPIIDDR	0	1	Unmodified	1084.5917	0.59169534	618	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	7	0							1										19.371	19.371	2	0.00087191	13809	DP690-7	127.46	81.036			0.93696	1.0519	NaN	1	0	Median	33158000	16655000	16502000	9093	618	8568	17970	43864;43865;43866;43867	43867		4	9606
LPFTPLSYIQGLSHR	0	1	Unmodified	1727.9359	0.93589019	2399	Q9UM00	TMCO1	Transmembrane and coiled-coil domain-containing protein 1	yes	yes	0	0	0	16	0																1	21.094	21.094	3	6.3536E-07	15903	DP690-16	178.68	157.95			0.64147	0.74797	NaN	1	0	Median	8398300	5474200	2924100	9094	2399	8569	17971	43868;43869;43870;43871;43872	43869		5	9606
LPGFPTQDDEVMMLTER	0	1	2 Oxidation (M)	2009.9074	0.90742811	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	2	0	13	0													1				19.045	19.045	2	0.034113	14132	DP690-13	81.565	49.406			NaN	NaN	NaN	0	0	Median	13112000	13112000	0	9095	2090	8570	17972	43873;43874	43874	2603;2604	2	9606
LPGGELNPGEDEVEGLKR	1	1	Unmodified	1907.9589	0.95887005	190	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	1	15	0															1		15.577	15.577	3	0.018473	9550	DP690-15	117.18	85.024			NaN	NaN	NaN	0	0	Median	0	0	0	9096	190	8571	17973	43875	43875		1	9606
LPGGVQNFPQFSALR	0	1	Unmodified	1629.8627	0.86272524	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															19.642	19.642	2	2.2607E-05	13144	DP690-2	143	122.68			1.1295	1.1829	NaN	1	0	Median	5582600	2545700	3036900	9097	1555	8572	17974	43876;43877	43876		2	9606
LPGHAGSINEVAFHPDEPIIISASSDKR	1	1	Unmodified	2956.5043	0.5042839	1839	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	1	14	0														1			16.245	16.245	5	1.9585E-05	10628	DP690-14	77.838	55.889			0.69434	0.79136	NaN	1	0	Median	161680000	97425000	64253000	9098	1839	8573	17975	43878;43879;43880;43881	43878		4	9606
LPGLLMTIIR	0	1	Unmodified	1125.6944	0.69438627	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	11	0											1						21.789	21.789	2	0.050649	18842	DP690-11	64.04	43.52			0.64799	0.79731	NaN	1	0	Median	13286000	8894200	4391400	9099	877	8574	17976	43882;43883	43882		2	9606
LPGLLMTIIR	0	1	Oxidation (M)	1141.6893	0.68930089	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	0	3	0			1														20.673	20.673	2	0.014132	15749	DP690-3	85.731	51.558			2.9758	3.3389	NaN	1	0	Median	7766300	1752300	6014000	9100	877	8574	17977	43884;43885;43886;43887	43884	1328	4	9606
LPGNTNVNYR	0	1	Unmodified	1146.5782	0.57817054	1162	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	9	0									2								12.483	12.483	2	0.019787	5190	DP690-9	102.51	28.897			NaN	NaN	NaN	0	0	Median	0	0	0	9101	1162	8575	17978;17979	43888;43889	43889		2	9606
LPGSGAVQAASPER	0	1	Unmodified	1338.6892	0.68917755	1568	Q86U90	YRDC	YrdC domain-containing protein, mitochondrial	yes	yes	0	0	0	7	0							1										12.961	12.961	2	2.7208E-05	5855	DP690-7	166.29	105.46			0.7578	0.85824	NaN	1	0	Median	26165000	13430000	12735000	9102	1568	8576	17980	43890;43891;43892	43890		3	9606
LPGSVGTPLPGVQVR	0	1	Unmodified	1475.846	0.84601255	1396	Q4G176	ACSF3	Acyl-CoA synthetase family member 3, mitochondrial	yes	yes	0	0	0	9.33	3.77				1								2					17.108	17.108	2	1.4668E-05	11837	DP690-12	133.89	90.596			0.54594	0.63963	3.8755	2	0	Median	61431000	43273000	18157000	9103	1396	8577	17981;17982;17983	43893;43894;43895;43896;43897	43893		5	9606
LPHLPGLEDLGIQATPLELK	1	0	Unmodified	2153.2096	0.20960543	1371	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	14	0														1			21.795	21.795	3	8.8392E-05	17950	DP690-14	119.68	88.569			NaN	NaN	NaN	0	0	Median	13589000	13589000	0	9104	1371	8578	17984	43898;43899;43900	43900		3	9606
LPIGDVATQYFADR	0	1	Unmodified	1564.7886	0.78855725	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	8	4				1								1					19.76	19.76	2	8.2999E-05	14328	DP690-4	177.57	147.02			1.1094	1.3012	45.165	2	0	Median	60556000	30676000	29880000	9105	1959	8579	17985;17986	43901;43902;43903;43904;43905	43904		5	9606
LPITCLTIPPR	0	1	Unmodified	1279.7322	0.73222834	871	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	12	0												1					17.912	17.912	2	0.003017	13162	DP690-12	92.051	72.808			0.69654	0.84311	NaN	1	0	Median	15306000	9409700	5896400	9106	871	8580	17987	43906	43906		1	9606
LPIVNEDDELVAIIAR	0	1	Unmodified	1778.9778	0.97781458	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	4	0				1													22.327	22.327	2	2.3771E-07	17161	DP690-4	170.4	118.48			1.2293	1.3966	NaN	1	0	Median	1568300	813410	754840	9107	474	8581	17988	43907;43908;43909;43910;43911	43909		5	9606
LPLAQVSAHPWVR	0	1	Unmodified	1472.8252	0.82521752	1861	Q96GD4	AURKB	Aurora kinase B	yes	yes	0	0	0	14	0														1			16.253	16.253	3	0.0096237	10654	DP690-14	67.252	52.255			0.51833	0.62727	NaN	1	0	Median	47226000	31819000	15407000	9108	1861	8582	17989	43912	43912		1	9606
LPLDCGLALR	0	1	Unmodified	1126.6169	0.61686423	1579	Q86VY4	TSPYL5	Testis-specific Y-encoded-like protein 5	yes	yes	0	0	0	13	0													1				17.819	17.819	2	0.052519	12549	DP690-13	63.419	47.537			0.92885	1.1377	NaN	1	0	Median	32575000	16288000	16287000	9109	1579	8583	17990	43913	43913		1	9606
LPLELGTFHQLFK	1	0	Unmodified	1541.8606	0.86059998	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								20.08	20.08	3	9.9332E-05	14967	DP690-9	114.76	59.992			0.99691	1.2544	NaN	1	0	Median	6143500	2963900	3179700	9110	2272	8584	17991	43914;43915	43914		2	9606
LPLFPEPLHVFAPR	0	1	Unmodified	1631.9188	0.91878356	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0.707									1	2	1						20.455	20.455	3	1.1678E-09	17294	DP690-10	205.02	163.54			NaN	NaN	NaN	0	0	Median	85663000	3592500	82070000	9111	591	8585	17992;17993;17994;17995	43916;43917;43918;43919;43920;43921	43918		6	9606
LPLGLLLHPFR	0	1	Unmodified	1274.7863	0.78631282	328	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	6	3.69			3							1	1						20.54	20.54	3	5.4288E-05	17307	DP690-11	153.24	153.24			0.72497	0.95987	15.718	3	0	Plateau	53467000	31037000	22430000	9112	328	8586	17996;17997;17998;17999;18000	43922;43923;43924;43925;43926;43927;43928;43929;43930;43931;43932;43933	43926		12	9606
LPLILVGNK	1	0	Unmodified	965.62735	0.62735256	1615	Q8IXI2	RHOT1	Mitochondrial Rho GTPase 1	yes	yes	0	0	0	11.5	0.5											1	1					17.8	17.8	2	0.0015811	13106	DP690-12	119.56	45.582			0.7095	0.86663	0.22168	2	0	Median	30237000	17337000	12899000	9113	1615	8587	18001;18002	43934;43935;43936	43935		3	9606
LPLISGFYK	1	0	Unmodified	1036.5957	0.59571809	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.33	0.471									2	1							19.166	19.166	1;2	0.00084139	13914	DP690-9	129.68	101.8			0.78018	0.86973	4.6992	2	0	Median	622890000	352400000	270490000	9114	1046	8588	18003;18004;18005	43937;43938;43939;43940;43941;43942;43943;43944;43945;43946;43947;43948;43949	43946		13	9606
LPLLPPESPGPLR	0	1	Unmodified	1384.8078	0.80783613	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							18.53	18.53	2	2.6326E-05	14649	DP690-10	129.85	32.421			0.59512	0.7385	NaN	1	0	Median	93292000	57409000	35882000	9115	1254	8589	18006	43950;43951;43952;43953	43952		4	9606
LPLMECVQMTQDVQK	1	0	2 Oxidation (M)	1850.8576	0.85764114	1089	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	2	0	3	0			2														14.711	14.711	2	0.0004694	8154	DP690-3	138.24	82.974			NaN	NaN	NaN	0	0	Median	6596200	3303000	3293200	9116	1089	8590	18007;18008	43954;43955;43956	43954	1708;1709	3	9606
LPLQDVYK	1	0	Unmodified	974.54368	0.54368251	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	11.3	2.92					1						1		4				17.581	17.581	2	0.0091358	9828	DP690-13	120.62	40.908			0.87793	0.94055	7.2531	2	0	Median	2685600000	1521799999.9999998	1163800000	9117	1031;1118	8591	18009;18010;18011;18012;18013;18014	43957;43958;43959;43960;43961;43962;43963;43964;43965;43966	43959		8	9606
LPLQLDDAVRPEAEGEEEGR	0	2	Unmodified	2222.0815	0.081504383	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	1	8	4				1								1					16.692	16.692	3	3.0567E-05	11356	DP690-12	119.46	89.416			0.69001	0.75209	13.984	2	0	Median	242140000	141100000	101040000	9118	495	8592	18015;18016	43967;43968;43969;43970;43971;43972;43973;43974	43967		8	9606
LPLSPPLVEDSAFEPSR	0	1	Unmodified	1852.9571	0.95707914	347	O96007	MOCS2	Molybdopterin synthase catalytic subunit	yes	yes	0	0	0	7	0							1										19.923	19.923	2	2.8425E-07	14462	DP690-7	146.67	129.73			0.55155	0.63942	NaN	1	0	Median	11194000	6841900	4352000	9119	347	8593	18017	43975;43976;43977;43978	43976		4	9606
LPLSPPLVEDSAFEPSRK	1	1	Unmodified	1981.052	0.052042156	347	O96007	MOCS2	Molybdopterin synthase catalytic subunit	yes	yes	0	0	1	7	0							1										17.929	17.929	3	4.7302E-05	11993	DP690-7	116.04	104.35			0.51334	0.54105	NaN	1	0	Median	25151000	15315000	9836200	9120	347	8594	18018	43979;43980	43980		2	9606
LPLTPVFEGLAFK	1	0	Unmodified	1430.8173	0.81733818	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	10.3	0.471										2	1						22.281	22.281	2	3.7356E-11	19756	DP690-10	182.16	124.61			1.1855	1.4566	18.164	2	0	Median	82639000	53899000	28740000	9121	1156	8595	18019;18020;18021	43981;43982;43983;43984;43985;43986;43987;43988	43985		8	9606
LPLVVEDFVK	1	0	Unmodified	1157.6696	0.66961131	1671	Q8NB37	PDDC1	Parkinson disease 7 domain-containing protein 1	yes	yes	0	0	0	15	0															1		20.566	20.566	2	9.289E-05	15723	DP690-15	150.36	104.39			0.75042	0.87073	NaN	1	0	Median	45347000	27024000	18322000	9122	1671	8596	18022	43989;43990;43991;43992;43993	43992		5	9606
LPNFGFVVFDDSEPVQK	1	0	Unmodified	1936.9571	0.95707914	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	8	4				1								1					22.181	22.181	2	8.9742E-10	18566	DP690-12	203.74	172.02			0.92394	1.0454	6.3351	2	0	Median	30811000	15985000	14826000	9123	1196	8597	18023;18024	43994;43995;43996;43997;43998;43999;44000;44001	43996		8	9606
LPNFGFVVFDDSEPVQR	0	1	Unmodified	1964.9632	0.96322715	2404	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	12	0												1					22.321	22.321	2	0.016567	18760	DP690-12	96.591	55.051			NaN	NaN	NaN	0	0	Median	1982900	1982900	0	9124	2404	8598	18025	44002;44003	44002		2	9606
LPNGLVIASLENYSPVSR	0	1	Unmodified	1928.0367	0.036726442	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	14	1.41													2			1	21.323	21.323	2	4.3721E-33	17016	DP690-13	295.29	272.06			0.64073	0.7383	0.56208	2	0	Median	235400000	149030000	86374000	9125	565	8599	18026;18027;18028	44004;44005;44006;44007;44008;44009	44004		6	9606
LPNNHIGISFIPR	0	1	Unmodified	1476.8201	0.82013215	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10.5	0.5										1	1						16.752	16.752	3	0.00031359	12040	DP690-10	103.97	85.398			0.66415	0.78755	NaN	1	0	Median	234390000	142430000	91963000	9126	250	8600	18029;18030	44010;44011;44012;44013;44014	44010		5	9606
LPNQTHPDVPVGDESQAR	0	1	Unmodified	1958.9446	0.94461697	2177	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	yes	yes	0	0	0	4	0				1													12.599	12.599	3	0.00039072	5396	DP690-4	89.877	73.87			0.73936	0.86148	NaN	1	0	Median	11987000	5898600	6088400	9127	2177	8601	18031	44015;44016	44016		2	9606
LPNTYPNSSSPGPGGLGGSVHYATMAR	0	1	Oxidation (M)	2703.2711	0.27111284	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	1	0	10	0										1							15.242	15.242	3	3.6934E-06	9869	DP690-10	108.3	79.628			NaN	NaN	NaN	0	0	Median	25255000	25255000	0	9128	1901	8602	18032	44017;44018	44017	2441	2	9606
LPNVDLVLSQTK	1	0	Unmodified	1325.7555	0.7554662	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	0	10.2	0.433										3	1						18.57	18.57	2	0.00030905	14699	DP690-10	118.23	61.512			0.82152	1.0135	NaN	1	0	Median	99833000	65197000	34636000	9129	1234	8603	18033;18034;18035;18036	44019;44020;44021;44022	44019		4	9606
LPPEEASPYVVDHGESGPLR	0	1	Unmodified	2148.0487	0.048747692	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	7	4			1								1						15.359	15.359	3	3.4402E-07	8918	DP690-3	139.88	119.52			0.61474	0.69678	12.67	2	0	Median	217350000	125920000	91428000	9130	883	8604	18037;18038	44023;44024;44025;44026;44027;44028;44029;44030;44031	44029		9	9606
LPPEVANFMQLVELDVSR	0	1	Unmodified	2056.0663	0.066312011	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							25.841	25.841	2	0.030311	24057	DP690-10	95.981	44.695			NaN	NaN	NaN	0	0	Median	0	0	0	9131	1254	8605	18039	44032	44032		1	9606
LPPGFSASSTVEKPSK	2	0	Unmodified	1630.8566	0.85663681	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	1	8	3.56			1							1	1						13.234	13.234	3	2.9087E-06	6838	DP690-10	128.74	97.078			0.63939	0.69005	9.8013	3	0	Median	1077200000	668270000	408890000	9132	272	8606	18040;18041;18042	44033;44034;44035;44036;44037;44038	44033		6	9606
LPPLPLTLALGAFLNHR	0	1	Unmodified	1842.088	0.087974152	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	14	0														2			24.847	24.847	3	1.4628E-23	21257	DP690-14	261.45	256.32			0.62965	0.7655	1.3776	2	0	Median	51717000	30855000	20861000	9133	348	8607	18043;18044	44039;44040;44041;44042;44043;44044;44045	44043		7	9606
LPPLPLTLALGAFLNHRK	1	1	Unmodified	1970.1829	0.18293717	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	1	14	0														1			22.646	22.646	4	0.040122	18719	DP690-14	61.641	5.3909			NaN	NaN	NaN	0	0	Median	12051000	12051000	0	9134	348	8608	18045	44046	44046		1	9606
LPPNTNDEVDEDPTGNK	1	0	Unmodified	1853.8279	0.82791546	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10.4	1.05									2	1	3	1					13.089	13.089	2	1.0696000000000001E-24	6476	DP690-10	277.82	252.34			0.63956	0.78949	15.064	3	0	Median	89859000	54395000	35464000	9135	1329	8609	18046;18047;18048;18049;18050;18051;18052	44047;44048;44049;44050;44051;44052;44053;44054;44055;44056;44057;44058;44059;44060	44049		14	9606
LPPPPDIKK	2	0	Unmodified	1003.6066	0.60661712	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	7.5	3.5				1							1						11.529	11.529	2	0.0063988	4393	DP690-11	108.09	67.402			0.57834	0.63433	9.7058	2	0	Median	58626000	36825000	21801000	9136	829	8610	18053;18054	44061;44062;44063	44061		3	9606
LPPSGSKPVAASTCSGK	2	0	Unmodified	1642.8349	0.83485551	183	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	0	1	12	0												1					10.24	10.24	3	0.0011606	2439	DP690-12	78.501	78.501			0.60964	0.70119	NaN	1	0	Median	52440000	32276000	20164000	9137	183	8611	18055	44064;44065;44066;44067	44064		4	9606
LPPTPLLLFPEEEATNGR	0	1	Unmodified	1993.052	0.052042156	2516	Q9Y679	AUP1	Ancient ubiquitous protein 1	yes	yes	0	0	0	14	0														1			21.985	21.985	2	3.1117E-11	18033	DP690-14	171.36	134.4			0.60954	0.73911	NaN	1	0	Median	34594000	21626000	12969000	9138	2516	8612	18056	44068;44069;44070;44071	44069		4	9606
LPPVLAIQLK	1	0	Unmodified	1090.7114	0.71141655	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	2	0		1															19.267	19.267	2	0.0091049	12708	DP690-2	84.916	62.956			1.0377	1.032	NaN	1	0	Median	3478400	1815000	1663400	9139	1803	8613	18057	44072;44073;44074;44075	44072		4	9606
LPPVLSHPIFDNR	0	1	Unmodified	1503.8198	0.8197978	1108	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	4	0				1													17.139	17.139	3	1.0752E-05	11250	DP690-4	142.76	142.76			0.74146	0.84004	NaN	1	0	Median	26399000	14813000	11586000	9140	1108	8614	18058	44076;44077;44078;44079	44076		4	9606
LPPYDIPGMVSVVELK	1	0	Unmodified	1755.9481	0.94809436	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	10	0										1							22.121	22.121	2	0.0020936	19499	DP690-10	87.216	87.216			0.47729	0.57858	NaN	1	0	Median	11072000	6456300	4615600	9141	1156	8615	18059	44080;44081;44082	44080		3	9606
LPPYSAGDGAELSTPGGK	1	0	Unmodified	1715.8366	0.83662965	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	13	0													1				15.406	15.406	2	8.5126E-10	9296	DP690-13	155.39	130.19			0.67004	0.76927	NaN	1	0	Median	91906000	50424000	41482000	9142	1597	8616	18060	44083;44084;44085;44086	44086		4	9606
LPQFGISTPGSDLHVNAK	1	0	Unmodified	1879.9792	0.97921156	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								16.979	16.979	3	0.028608	11087	DP690-9	49.537	27.696			1.1318	1.4358	NaN	1	0	Median	7468100	3112100	4356000	9143	1145	8617	18061	44087;44088	44087		2	9606
LPQGLPAEENMSNTCLK	1	0	Oxidation (M)	1916.8972	0.89719777	1717	Q8TCC3	MRPL30	39S ribosomal protein L30, mitochondrial	yes	yes	0	1	0	16	0																1	14.972	14.972	2	4.7959E-07	8529	DP690-16	145.81	125.97			0.6438	0.75025	NaN	1	0	Median	4322600	2442900	1879700	9144	1717	8618	18062	44089;44090;44091;44092	44091	2306	4	9606
LPQLPITNFSR	0	1	Unmodified	1284.719	0.71902112	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.94	3.98		1	2							7	1	1	1	1	1	1	20.392	20.392	2	5.8042E-05	15177	DP690-10	182.39	93.573			0.67848	0.75904	22.637	11	0	Median	3973399999.9999995	2346700000	1626599999.9999998	9145	549	8619	18063;18064;18065;18066;18067;18068;18069;18070;18071;18072;18073;18074;18075;18076;18077;18078	44093;44094;44095;44096;44097;44098;44099;44100;44101;44102;44103;44104;44105;44106;44107;44108;44109;44110;44111;44112;44113;44114;44115;44116;44117;44118;44119;44120;44121;44122;44123;44124;44125;44126;44127;44128;44129	44099		37	9606
LPQLVDMAAQIADGMAYIER	0	1	2 Oxidation (M)	2236.0868	0.086789457	412	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	2	0	12	0												1					21.149	21.149	2	0.00010283	17275	DP690-12	119.92	99.826			0.73803	0.89895	NaN	1	0	Median	9640400	5495600	4144800	9146	412	8620	18079	44130;44131;44132;44133	44131	455;456	4	9606
LPQPPEVGPQPAR	0	1	Unmodified	1384.7463	0.7462985	1847	Q96EV2	RBM33	RNA-binding protein 33	yes	yes	0	0	0	10	0										1							14.556	14.556	2	0.0054018	8871	DP690-10	114.4	49.561			NaN	NaN	NaN	0	0	Median	16819000	16819000	0	9147	1847	8621	18080	44134	44134		1	9606
LPQTPLDTGIPFPPVFSTSSAGVK	1	0	Unmodified	2455.2999	0.299877	1534	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	10	0										2							22.744	22.744	2	0.00276	20387	DP690-10	103.87	67.974			NaN	NaN	NaN	0	0	Median	3721100	3721100	0	9148	1534	8622	18081;18082	44135;44136	44136		2	9606
LPQTSDDEKKDF	2	0	Unmodified	1421.6674	0.66743906	2075	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	yes	yes	0	0	2	16	0																1	11.866	11.866	3	0.0013607	4447	DP690-16	90.697	66.613			0.75067	0.83879	NaN	1	0	Median	78832000	42501000	36331000	9149	2075	8623	18083	44137;44138;44139;44140	44138		4	9606
LPRPPPPEMPESLK	1	1	Unmodified	1586.849	0.84904901	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	13	2.16										1				1	1		14.884	14.884	3	0.011182	9330	DP690-10	65.565	39.587			0.42962	0.49511	9.5449	2	0	Median	429510000	320050000	109470000	9150	1070	8624	18084;18085;18086	44141;44142;44143;44144;44145	44142		5	9606
LPRPPPPEMPESLK	1	1	Oxidation (M)	1602.844	0.84396364	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	1	13.2	2.49									1					1	2		13.083	13.083	3	0.00052137	6057	DP690-15	95.195	68.442			0.45941	0.52228	10.49	3	0	Median	371860000	249080000	122770000	9151	1070	8624	18087;18088;18089;18090	44146;44147;44148;44149;44150;44151;44152;44153;44154;44155;44156;44157;44158;44159	44152	1669	14	9606
LPRPPPPEMPESLKK	2	1	Oxidation (M)	1730.9389	0.93892665	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	2	12	3									1						1		11.693	11.693	4	0.0024117	4343	DP690-15	74.853	57.6			0.46741	0.51688	6.4817	2	0	Median	81771000	53502000	28269000	9152	1070	8625	18091;18092	44160;44161;44162;44163	44161	1669	4	9606
LPSETIFVGCEFLHHLLR	0	1	Unmodified	2167.1248	0.12482994	911	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	11	0											1						21.715	21.715	4	0.00010407	18895	DP690-11	105.63	91.111			0.84427	1.0347	NaN	1	0	Median	16001000	7593100	8407900	9153	911	8626	18093	44164;44165;44166;44167	44165		4	9606
LPSGSGAASPTGSAVDIR	0	1	Unmodified	1641.8322	0.83221298	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							14.287	14.287	2	1.7491E-29	8449	DP690-10	234.04	199.23			0.77008	0.9511	4.8498	2	0	Median	142530000	80844000	61685000	9154	1145	8627	18094;18095	44168;44169;44170;44171;44172	44168		5	9606
LPSNTLDR	0	1	Unmodified	914.48214	0.48214489	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	10	0										1							11.681	11.681	2	0.0044427	4622	DP690-10	125.81	48.968			NaN	NaN	NaN	0	0	Median	280600000	0	280600000	9155	1046	8628	18096	44173;44174;44175	44173		3	9606
LPSRPGAQGVEPQNLR	0	2	Unmodified	1717.9224	0.92236539	1763	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	1	12	0												1					12.822	12.822	3	0.00024118	5932	DP690-12	103.67	62.577			0.58269	0.66067	NaN	1	0	Median	76834000	47973000	28861000	9156	1763	8629	18097	44176;44177	44177		2	9606
LPSSAVTPR	0	1	Unmodified	926.51853	0.5185304	88	O00468	AGRN	Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment	yes	yes	0	0	0	9.5	0.5									1	1							14.38	14.38	2	0.076375	7690	DP690-9	59.245	18.216			1.0055	1.2571	35.062	2	0	Median	61626000	27267000	34359000	9157	88	8630	18098;18099	44178;44179	44179		2	9606
LPSVALLLNDLKK	2	0	Unmodified	1422.881	0.88100107	2137	Q9H8V3	ECT2	Protein ECT2	yes	yes	0	0	1	11	0											1						20.751	20.751	3	0.00032544	17606	DP690-11	101.38	72.947			0.82029	0.98445	NaN	1	0	Median	14503000	5896400	8606600	9158	2137	8631	18100	44180;44181;44182	44181		3	9606
LPTFGAPEQLVDLK	1	0	Unmodified	1526.8344	0.83444481	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	9.29	2.37				1					2	2	1	1					20.337	20.337	2	1.4616E-05	16394	DP690-12	176.87	176.87			0.78316	0.86847	11.683	3	0	Median	399320000	224790000	174530000	9159	1269	8632	18101;18102;18103;18104;18105;18106;18107	44183;44184;44185;44186;44187;44188;44189;44190;44191;44192;44193;44194;44195;44196;44197;44198;44199;44200	44192		18	9606
LPTGAQQHSILLLLNR	0	1	Unmodified	1773.0261	0.026102177	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	9.5	0.5									1	1							18.505	18.505	3	5.3059E-07	14688	DP690-10	142.45	135.5			0.71965	0.88812	7.6788	2	0	Median	176960000	81986000	94973000	9160	1158	8633	18108;18109	44201;44202;44203;44204	44202		3	9606
LPTGQISGPEIK	1	0	Unmodified	1238.6871	0.68705229	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							14.764	14.764	2	0.002038	8232	DP690-9	94.465	60.379			0.60455	0.7548	3.4596	2	0	Median	126860000	79600000	47258000	9161	1145	8634	18110;18111	44205;44206;44207	44206		3	9606
LPVALDPGAK	1	0	Unmodified	979.57023	0.57023162	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												1					14.981	14.981	2	0.00016058	8918	DP690-12	133.86	108.97			0.68193	0.74594	NaN	1	0	Median	271070000	163630000	107440000	9162	375	8635	18112	44208;44209;44210;44211;44212	44209		5	9606
LPVDYYGIPFAAPTALASR	0	1	Unmodified	2021.0622	0.062212911	1439	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	8	3.56			1							1	1						21.915	21.915	2	6.9756E-10	19195	DP690-11	156.24	156.24			0.75284	0.92117	5.7602	2	0	Median	98343000	56412000	41930000	9163	1439	8636	18113;18114;18115	44213;44214;44215;44216;44217;44218;44219;44220;44221	44219		9	9606
LPVGTTATLYFR	0	1	Unmodified	1337.7343	0.73433683	2269	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	12.5	2.5										1					1		18.342	18.342	2	0.00081615	14383	DP690-10	114.97	34.803			0.64117	0.77092	12.812	2	0	Median	87089000	49574000	37515000	9164	2269	8637	18116;18117	44222;44223;44224;44225	44223		4	9606
LPVPESITGFAR	0	1	Unmodified	1285.703	0.7030367	1659	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	0	0	0	12	4								1								1	18.46	18.46	2	0.00020742	12797	DP690-16	140.83	117.31			0.69629	0.80193	12.647	2	0	Median	98390000	59505000	38885000	9165	1659	8638	18118;18119	44226;44227;44228;44229;44230	44228		5	9606
LPVTAFEAFDLEAR	0	1	Unmodified	1577.809	0.80895834	1619	Q8IXV7	KLHDC8B	Kelch domain-containing protein 8B	yes	yes	0	0	0	14	0														1			21.515	21.515	2	0.0026282	17571	DP690-14	96.64	81.961			1.2317	1.5199	NaN	1	0	Median	12179000	5667600	6511300	9166	1619	8639	18120	44231	44231		1	9606
LPVVIGGLLDVDCSEDVIK	1	0	Unmodified	2040.0813	0.081293373	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	10.5	0.5										1	1						22.626	22.626	2	1.9259E-07	20057	DP690-11	143.76	112.9			0.73791	0.90222	9.1377	2	0	Median	48772000	28970000	19803000	9167	1075	8640	18121;18122	44232;44233;44234;44235	44234		4	9606
LPWDSLLTR	0	1	Unmodified	1099.6026	0.60259438	717	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	12	0												1					20.706	20.706	2	0.0021564	16712	DP690-12	113.26	82.752			0.9315	1.1338	NaN	1	0	Median	11399000	4874100	6525400	9168	717	8641	18123	44236;44237;44238	44237		3	9606
LPYDVTPEQALAHEEVK	1	0	Unmodified	1937.9735	0.97345748	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	10	0										2							16.894	16.894	3	0.00056407	12296	DP690-10	119.96	85.659			NaN	NaN	NaN	0	0	Median	69491000	0	69491000	9169	766	8642	18124;18125	44239;44240;44241	44239		3	9606
LQAAATLTEVANGIESLGVKPDLPPPPSK	2	0	Unmodified	2912.5859	0.58588827	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	1	11	0											1						22.309	22.309	3	8.9923E-06	19633	DP690-11	108.88	108.88			0.43906	0.52183	NaN	1	0	Median	37227000	24221000	13006000	9170	837	8643	18126	44242;44243;44244;44245	44244		4	9606
LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	0	2	Unmodified	3125.432	0.43198317	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	11	0											1						16.864	16.864	3	4.1562E-11	12121	DP690-11	129.47	122.95			0.66214	0.81623	NaN	1	0	Median	53534000	29026000	24509000	9171	1078	8644	18127	44246;44247	44246		2	9606
LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	0	2	Oxidation (M)	3141.4269	0.4268978	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	1	7	4			1								1						15.885	15.885	3	7.002E-09	10754	DP690-11	115.34	87.037			0.74466	0.77034	NaN	1	0	Median	80981000	71622000	9359200	9172	1078	8644	18128;18129	44248;44249;44250	44248	1686	3	9606
LQAEEVAQQK	1	0	Unmodified	1142.5932	0.5931519	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	7	3.56		1							1	1							10.946	10.946	2	2.7562E-05	3256	DP690-9	176.09	114.4			0.68153	0.75698	26.083	3	0	Median	633560000	370450000	263120000	9173	1319	8645	18130;18131;18132	44251;44252;44253;44254;44255;44256;44257;44258;44259;44260	44258		10	9606
LQAEIEGLK	1	0	Unmodified	999.56006	0.56006086	38	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	13	0													1				14.83	14.83	2	0.00085616	8466	DP690-13	128.61	55.818		+	0.89316	1.0039	NaN	1	0	Median	159230000	82715000	76514000	9174	38	8646	18133	44261;44262;44263;44264	44263		4	9606
LQAETEELEEEKSGLQK	2	0	Unmodified	1959.9637	0.96368066	500	P15408	FOSL2	Fos-related antigen 2	yes	yes	0	0	1	14	0														1			13.893	13.893	3	1.3517E-08	7337	DP690-14	176.4	176.4			0.75784	0.84814	NaN	1	0	Median	78775000	42612000	36163000	9175	500	8647	18134	44265;44266;44267;44268	44265		4	9606
LQAFGFCEYKEPESTLR	1	1	Unmodified	2073.983	0.98297631	803	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	1	11	0											1						17.227	17.227	3	4.7378E-05	12625	DP690-11	139.21	115.2			0.94315	1.0583	NaN	1	0	Median	179940000	95803000	84135000	9176	803	8648	18135	44269;44270;44271;44272	44269		4	9606
LQAIGELESIGELFSR	0	1	Unmodified	1760.9309	0.93086439	1197	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	10	0										3							24.277	24.277	2	6.2222E-07	22208	DP690-10	150.14	150.14			0.80028	1.0012	NaN	1	0	Median	8503600	4576200	3927400	9177	1197	8649	18136;18137;18138	44273;44274;44275;44276	44273		4	9606
LQALANEQAAAAHELEK	1	0	Unmodified	1805.9272	0.92717599	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	10	0										1							15.114	15.114	3	2.5622E-05	9678	DP690-10	123.14	123.14			0.65151	0.80462	NaN	1	0	Median	136100000	81160000	54938000	9178	1570	8650	18139	44277;44278	44277		2	9606
LQALDTGWNELHK	1	0	Unmodified	1523.7732	0.77324153	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							16.311	16.311	3	5.4982E-05	11467	DP690-10	138.02	121.45			0.98909	1.2125	NaN	1	0	Median	165080000	88533000	76552000	9179	1080	8651	18140	44279;44280;44281	44280		3	9606
LQALFTAVLLSEEDRATVLK	1	1	Unmodified	2216.2416	0.24163384	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	1	11	0											1						21.519	21.519	3	0.0017009	18649	DP690-11	72.968	42.321			0.81156	0.9756	NaN	1	0	Median	14586000	7756100	6829900	9180	83	8652	18141	44282;44283	44283		2	9606
LQAQLNELQAQLSQK	1	0	Unmodified	1710.9264	0.92644771	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							17.994	17.994	2	0.00014965	13860	DP690-10	150.69	109.29			NaN	NaN	NaN	0	0	Median	16993000	0	16993000	9181	1301	8653	18142	44284	44284		1	9606
LQAQSLSTVGPR	0	1	Unmodified	1255.6884	0.68844927	172	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	11	0											1						13.778	13.778	2	3.5533E-05	7570	DP690-11	127.42	92.272			0.87636	1.0531	NaN	1	0	Median	68144000	33845000	34299000	9182	172	8654	18143	44285;44286	44285		2	9606
LQAVEVVITHLAPGTK	1	0	Unmodified	1674.9669	0.96685596	2449	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	yes	yes	0	0	0	7.67	0.471							1	2									18.53	18.53	3	0.00016629	11993	DP690-8	106.35	106.35			0.58094	0.63628	37.527	2	0	Median	33027000	18199000	14828000	9183	2449	8655	18144;18145;18146	44287;44288;44289;44290;44291;44292;44293	44291		7	9606
LQAYHTQTTPLIEYYR	0	1	Unmodified	1996.0054	0.005426314	890	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	15	0															1		16.305	16.305	3	0.00012893	10543	DP690-15	108.96	84.592			0.64362	0.73325	NaN	1	0	Median	45192000	27668000	17524000	9184	890	8656	18147	44294;44295;44296;44297	44296		4	9606
LQAYTSVSK	1	0	Unmodified	995.52876	0.52876073	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	3	0			1														11.513	11.513	2	0.015509	4017	DP690-3	83.998	37.983			0.90671	0.96033	NaN	1	0	Median	34101000	18549000	15552000	9185	2437	8657	18148	44298;44299;44300;44301	44298		4	9606
LQDEANYHLYGSR	0	1	Unmodified	1564.727	0.72701962	1221	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	4	0				1													13.543	13.543	3	0.0083392	6615	DP690-4	68.83	52.888			0.71493	0.82982	NaN	1	0	Median	6213000	3680000	2533000	9186	1221	8658	18149	44302;44303	44302		2	9606
LQDEEASMGASYSK	1	0	Oxidation (M)	1530.6508	0.65080272	2042	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	yes	yes	0	1	0	10	0										1							11.238	11.238	2	0.049085	3993	DP690-10	83.53	56.201			NaN	NaN	NaN	0	0	Median	6559200	0	6559200	9187	2042	8659	18150	44304	44304		1	9606
LQDEIQNMK	1	0	Unmodified	1117.5438	0.54375887	424	P08670	VIM	Vimentin	yes	yes	0	0	0	13	0													1				13.468	13.468	2	0.0024644	6371	DP690-13	134.81	19.317			NaN	NaN	NaN	0	0	Median	278900000	0	278900000	9188	424	8660	18151	44305;44306	44305		2	9606
LQDEIQNMKEEMAR	1	1	2 Oxidation (M)	1765.7975	0.79748373	424	P08670	VIM	Vimentin	yes	yes	0	2	1	13.4	1.41												3	2	1	1	1	10.765	10.765	2;3	2.1435E-05	2869	DP690-13	123.95	100.01			0.86035	0.96334	14.384	8	0	Median	4909400000	2619500000	2289900000	9189	424	8661	18152;18153;18154;18155;18156;18157;18158;18159	44307;44308;44309;44310;44311;44312;44313;44314;44315;44316;44317;44318;44319;44320;44321;44322;44323;44324;44325;44326;44327	44315	484;485	21	9606
LQDEIQNMKEEMAR	1	1	Oxidation (M)	1749.8026	0.80256911	424	P08670	VIM	Vimentin	yes	yes	0	1	1	12.7	0.452												2	5				12.525	12.525	2;3	9.8659E-06	5071	DP690-12	130.19	100.08			0.78522	0.84399	8.0411	5	0	Median	1269100000	751230000	517870000	9190	424	8661	18160;18161;18162;18163;18164;18165;18166	44328;44329;44330;44331;44332;44333;44334;44335;44336;44337;44338;44339;44340;44341;44342;44343;44344;44345;44346;44347	44333	484;485	19	9606
LQDEIQNMKEEMAR	1	1	Unmodified	1733.8077	0.80765448	424	P08670	VIM	Vimentin	yes	yes	0	0	1	12.5	0.5												2	2				15.489	15.489	2;3	2.798E-14	9699	DP690-12	229.68	136.12			0.81186	0.85204	21.491	4	0	Median	784890000	424530000	360360000	9191	424	8661	18167;18168;18169;18170	44348;44349;44350;44351;44352;44353;44354;44355;44356;44357;44358;44359	44353		12	9606
LQDGTPQAALSPLTPAR	0	1	Unmodified	1734.9264	0.92644771	881	P53814	SMTN	Smoothelin	yes	yes	0	0	0	11	0											1						16.661	16.661	2	3.5645E-06	11870	DP690-11	135.02	107.1			1.1475	1.3693	NaN	1	0	Median	35638000	17232000	18406000	9192	881	8662	18171	44360;44361;44362;44363	44362		4	9606
LQDIITALEER	0	1	Unmodified	1299.7034	0.70343063	1281	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	9	0									1								20.24	20.24	2	0.033955	15122	DP690-9	92.611	30.832			NaN	NaN	NaN	0	0	Median	0	0	0	9193	1281	8663	18172	44364	44364		1	9606
LQDVADSFKK	2	0	Unmodified	1149.603	0.60298831	808;16;446	P49792;O14715;Q99666;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	1	10	0										1							12.643	12.643	3	0.033703	6088	DP690-10	53.08	17.428			0.78418	0.94087	NaN	1	0	Median	23447000	12335000	11112000	9194	808;16;446	8664	18173	44365	44365		1	9606
LQEAGILSAEELQR	0	1	Unmodified	1555.8206	0.82058566	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.6	3.38		1							1	1	2						17.405	17.405	2	5.0271E-17	12967	DP690-10	280.38	228.62			0.91757	1.0301	19.599	3	0	Plateau	633980000	334100000	299880000	9195	1319	8665	18174;18175;18176;18177;18178	44366;44367;44368;44369;44370;44371;44372;44373;44374;44375;44376	44369		11	9606
LQEALER	0	1	Unmodified	857.46068	0.46068117	1119	Q05682	CALD1	Caldesmon	no	no	0	0	0	11	0											1						11.317	11.317	2	0.054315	4009	DP690-11	135.87	21.842			NaN	NaN	NaN	0	0	Median	0	0	0	9196	1119	8666	18179	44377	44377		1	9606
LQEALNLFK	1	0	Unmodified	1074.6073	0.6073454	1422	Q5JWF2	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas	yes	yes	0	0	0	14	0														1			18.215	18.215	2	0.010258	13239	DP690-14	89.296	42.302			0.82324	0.99637	NaN	1	0	Median	31515000	17566000	13949000	9197	1422	8667	18180	44378;44379	44378		2	9606
LQECSNSDQLQGK	1	0	Unmodified	1505.678	0.67802052	2237	Q9NVR5	DNAAF2	Protein kintoun	yes	yes	0	0	0	6	0						1											10.849	10.849	2	0.0077979	3314	DP690-6	110.38	58.936			NaN	NaN	NaN	0	0	Median	0	0	0	9198	2237	8668	18181	44380	44380		1	9606
LQECSNSDQLQGKEER	1	1	Unmodified	1919.8643	0.86431774	2237	Q9NVR5	DNAAF2	Protein kintoun	yes	yes	0	0	1	6	0						1											10.518	10.518	3	6.3751E-05	2935	DP690-6	131.24	113.75			1.0029	1.1239	NaN	1	0	Median	7146900	3035500	4111400	9199	2237	8669	18182	44381;44382;44383;44384	44383		4	9606
LQEDKEQMAQQLAEETQGFQR	1	1	Oxidation (M)	2522.1707	0.1707301	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	9.5	0.5									1	1							15.636	15.636	3	5.5713E-20	9194	DP690-9	193.27	160.72			0.88388	1.0744	14.067	2	0	Median	83394000	39752000	43642000	9200	1319	8670	18183;18184	44385;44386;44387;44388;44389;44390;44391	44390	2026	7	9606
LQEEEQKKEELAR	2	1	Unmodified	1628.837	0.836964	2396	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	2	11	0											1						10.319	10.319	4	0.00030359	2567	DP690-11	114.72	114.72			0.71613	0.8663	NaN	1	0	Median	169890000	103650000	66233000	9201	2396	8671	18185	44392;44393	44393		2	9606
LQEEIVNSVK	1	0	Unmodified	1157.6292	0.62920306	233	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	9	0									1								13.996	13.996	2	0.00055755	7192	DP690-9	117.01	38.901			0.73022	0.93365	NaN	1	0	Median	15663000	9452300	6210300	9202	233	8672	18186	44394;44395	44395		2	9606
LQEEMLQREEAENTLQSFR	0	2	Oxidation (M)	2366.1172	0.11723796	424	P08670	VIM	Vimentin	yes	yes	0	1	1	13	0.707												1	2	1			16.712	16.712	2;3	8.4186E-13	11121	DP690-13	189.99	157.55			0.85252	0.97887	5.7054	3	0	Median	951890000	478240000	473650000	9203	424	8673	18187;18188;18189;18190	44396;44397;44398;44399;44400;44401;44402;44403;44404;44405;44406;44407;44408;44409;44410;44411;44412	44406	481	17	9606
LQEEMLQREEAENTLQSFR	0	2	Unmodified	2350.1223	0.12232334	424	P08670	VIM	Vimentin	yes	yes	0	0	1	12.8	0.433												1	3				17.438	17.438	2;3	5.7657E-17	12105	DP690-13	189.33	182.2			0.98124	1.1267	8.2501	3	0	Median	538610000	273300000	265310000	9204	424	8673	18191;18192;18193;18194	44413;44414;44415;44416;44417;44418;44419;44420;44421	44420		9	9606
LQEKEDLQELNDR	1	1	Unmodified	1628.8006	0.8005785	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	12	0.816											2	2	2				13.779	13.779	2;3	5.6391E-09	6419	DP690-12	208.51	135.15			0.77127	0.90498	44.102	6	0	Median	1551299999.9999998	897620000	653640000	9205	359	8674	18195;18196;18197;18198;18199;18200	44422;44423;44424;44425;44426;44427;44428;44429;44430;44431;44432;44433;44434;44435;44436;44437;44438;44439;44440;44441;44442;44443	44435		22	9606
LQELASPPAGRPTPAPR	0	2	Unmodified	1756.9584	0.95841654	1650	Q8N3F8	MICALL1	MICAL-like protein 1	yes	yes	0	0	1	11	0											1						12.648	12.648	3	0.067717	5966	DP690-11	40.242	14.376			0.69122	0.85208	NaN	1	0	Median	34387000	22456000	11931000	9206	1650	8675	18201	44444	44444		1	9606
LQELDGELEAALGLLDIILAK	1	0	Unmodified	2236.2566	0.2566152	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	9	0									1								30.2	30.2	2	0.00054183	24352	DP690-9	99.344	85.26			0.63685	0.70878	NaN	1	0	Median	566750	325370	241380	9207	1782	8676	18202	44445	44445		1	9606
LQELEANPPSDVYLSSR	0	1	Unmodified	1916.948	0.94797101	205	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	11	0											1						17.187	17.187	2	4.7421E-12	12603	DP690-11	183.06	121.11			NaN	NaN	NaN	0	0	Median	17407000	17407000	0	9208	205	8677	18203	44446	44446		1	9606
LQELEGQIADLKK	2	0	Unmodified	1483.8246	0.8246084	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	1	10	0										1							15.105	15.105	3	1.1929E-05	9701	DP690-10	143.31	143.31			0.886	1.0171	NaN	1	0	Median	239910000	130280000	109630000	9209	311	8678	18204	44447;44448;44449;44450	44450		4	9606
LQELNYNLK	1	0	Unmodified	1133.6081	0.60807369	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	3	0			1														15.304	15.304	2	0.001883	9084	DP690-3	116.25	73.963			0.8126	0.86646	NaN	1	0	Median	26297000	14342000	11956000	9210	724	8679	18205	44451;44452;44453	44451		3	9606
LQELPDAVPHGEMPR	0	1	Oxidation (M)	1703.8301	0.83010449	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	0	7	4			1								1						13.986	13.986	3	0.0018943	7247	DP690-3	78.902	46.834			0.61121	0.66397	6.9436	2	0	Median	423920000	253140000	170780000	9211	652	8680	18206;18207	44454;44455;44456;44457;44458;44459;44460	44459	915	7	9606
LQELPDAVPHGEMPR	0	1	Unmodified	1687.8352	0.83518986	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	11	0											2						15.374	15.374	2;3	0.00011405	9910	DP690-11	110.77	78.434			0.9196	1.0027	NaN	1	0	Median	395910000	241380000	154530000	9212	652	8680	18208;18209	44461;44462;44463;44464;44465;44466;44467;44468;44469	44464		9	9606
LQELTDLLQEK	1	0	Unmodified	1328.7187	0.71874635	1448	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	11	0											2						19.374	19.374	2	0.011933	15737	DP690-11	104.22	43.785			NaN	NaN	NaN	0	0	Median	37959000	19266000	18693000	9213	1448	8681	18210;18211	44470;44471;44472	44472		3	9606
LQEMEGTVK	1	0	Unmodified	1033.5114	0.51139611	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1															11.749	11.749	2	0.041071	3852	DP690-2	89.698	10.928			NaN	NaN	NaN	0	0	Median	3218800	3218800	0	9214	668	8682	18212	44473	44473		1	9606
LQETLSAADR	0	1	Unmodified	1102.5619	0.56185177	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	5.5	3.5		1							1								12.595	12.595	2	8.9762E-05	5252	DP690-9	155.58	73.344			0.99639	1.0465	17.729	2	0	Median	345460000	185990000	159470000	9215	1046	8683	18213;18214	44474;44475;44476;44477;44478;44479;44480	44480		7	9606
LQETSSQSYVEEQK	1	0	Unmodified	1654.7686	0.76860967	1669	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	11	0											1						12.484	12.484	2	0.00082677	5686	DP690-11	176.32	100.93			NaN	NaN	NaN	0	0	Median	0	0	0	9216	1669	8684	18215	44481	44481		1	9606
LQEVECEEQR	0	1	Unmodified	1318.5823	0.58232922	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	10	3.46				1								3					11.032	11.032	2	3.76E-05	3595	DP690-12	152.06	106.98			0.81589	0.95139	5.1797	2	0	Median	46431000	25132000	21299000	9217	1227	8685	18216;18217;18218;18219	44482;44483;44484;44485;44486;44487;44488;44489;44490;44491	44482		10	9606
LQEVFGHAIK	1	0	Unmodified	1140.6291	0.62914348	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	8	4				1								1					13.903	13.903	3	0.0024418	7422	DP690-12	84.817	26.587			0.68884	0.82924	NaN	1	0	Median	18756000	11216000	7539700	9218	886	8686	18220;18221	44492;44493;44494;44495	44494		4	9606
LQFHDVAGDIFHQQCK	1	0	Unmodified	1941.9156	0.91556545	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	4.33	0.471				2	1												16.668	16.668	3;4	7.4353E-08	10722	DP690-4	171.15	148.8			0.95749	0.97805	39.793	3	0	Plateau	488730000	251070000	237660000	9219	469	8687	18222;18223;18224	44496;44497;44498;44499;44500;44501;44502;44503;44504	44503		9	9606
LQFIFTNIDPK	1	0	Unmodified	1334.7234	0.72343779	2163	Q9HBM1	SPC25	Kinetochore protein Spc25	yes	yes	0	0	0	15	0															1		20.387	20.387	2	0.0019863	15609	DP690-15	119.62	85.695			0.7306	0.85342	NaN	1	0	Median	6708800	3553600	3155200	9220	2163	8688	18225	44505;44506	44505		2	9606
LQGDANNLHGFEVDSR	0	1	Unmodified	1770.8285	0.82852458	854	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	16	0																1	14.486	14.486	3	1.2635E-06	7890	DP690-16	137.27	116.3			0.83658	0.93385	NaN	1	0	Median	68260000	36973000	31287000	9221	854	8689	18226	44507;44508;44509;44510	44510		4	9606
LQGEFQLR	0	1	Unmodified	989.52943	0.52942943	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								15.057	15.057	2	0.040596	8514	DP690-9	104.75	41.44			0.96447	1.1557	NaN	1	0	Median	37091000	20826000	16265000	9222	1264	8690	18227	44511	44511		0	9606
LQGEGLSVAGIVCHVGK	1	0	Unmodified	1722.9087	0.90868916	1195	Q13268	DHRS2	Dehydrogenase/reductase SDR family member 2, mitochondrial	yes	yes	0	0	0	12.3	3.77							1								2		17.227	17.227	2;3	2.1713E-07	11712	DP690-15	158.34	125.28			0.83425	0.9082	11.166	3	0	Median	289870000	147170000	142700000	9223	1195	8691	18228;18229;18230	44512;44513;44514;44515;44516;44517;44518;44519;44520;44521;44522;44523;44524	44516		13	9606
LQGEVVAFDYQSK	1	0	Unmodified	1482.7355	0.73545904	1388	Q3MHD2	LSM12	Protein LSM12 homolog	yes	yes	0	0	0	11	4							1								1		16.663	16.663	2	4.8859E-05	10914	DP690-15	160.72	133.97			0.83476	0.92108	37.053	2	0	Median	128380000	63893000	64486000	9224	1388	8692	18231;18232	44525;44526;44527;44528;44529	44527		5	9606
LQGINCGPDFTPSFANLGR	0	1	Unmodified	2062.9895	0.98945867	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	10	0										1							20.027	20.027	2	3.1399E-50	16765	DP690-10	253.97	210.17			NaN	NaN	NaN	0	0	Median	28753000	28753000	0	9225	1111	8693	18233	44530;44531	44530		2	9606
LQGQLEQGDDTAAER	0	1	Unmodified	1629.7594	0.75944196	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	8.33	3.54			1	1					1		2	1					12.303	12.303	2	4.5565E-74	5462	DP690-11	285.83	139.92			0.68382	0.82106	NaN	1	0	Median	81910000	13455000	68456000	9226	1687	8694	18234;18235;18236;18237;18238;18239	44532;44533;44534;44535;44536;44537;44538;44539;44540;44541;44542;44543	44532		12	9606
LQGQLEQGDDTAAERLEK	1	1	Unmodified	1999.9811	0.98106206	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	1	11	0											1						13.658	13.658	3	0.00031084	7473	DP690-11	130.02	86.217			NaN	NaN	NaN	0	0	Median	46438000	46438000	0	9227	1687	8695	18240	44544;44545	44545		2	9606
LQGSCTSCPSSIITLK	1	0	Unmodified	1750.8594	0.8593557	2402	Q9UMS0	NFU1	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	yes	yes	0	0	0	7	0							2										16.367	16.367	2	0.00012892	10020	DP690-7	148.89	111.17			NaN	NaN	NaN	0	0	Median	10534000	10534000	0	9228	2402	8696	18241;18242	44546;44547;44548	44546		3	9606
LQHAAELIK	1	0	Unmodified	1021.592	0.59202969	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			1														10.982	10.982	2	0.00032244	3410	DP690-3	158.87	39.467			0.81955	0.88155	NaN	1	0	Median	17303000	10057000	7246400	9229	1739	8697	18243	44549;44550	44549		2	9606
LQIAQLYPISIFIKPK	2	0	Unmodified	1871.1284	0.12844198	1173	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	1	11	0											1						21.955	21.955	3	0.011308	19214	DP690-11	94.007	73.442			NaN	NaN	NaN	0	0	Median	10370000	10370000	0	9230	1173	8698	18244	44551;44552	44552		2	9606
LQIASDENYKDPTNLQGK	2	0	Unmodified	2033.0065	0.006548526	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							14.487	14.487	3	0.00075254	8775	DP690-10	83.964	45.386			0.64075	0.78618	NaN	1	0	Median	100410000	58571000	41841000	9231	1236	8699	18245	44553;44554;44555;44556	44555		4	9606
LQIDEQLR	0	1	Unmodified	1013.5506	0.55055881	829;1127	P51114;P51116;Q06787	FXR1;FXR2;FMR1	Fragile X mental retardation syndrome-related protein 1;Fragile X mental retardation syndrome-related protein 2;Fragile X mental retardation protein 1	no	no	0	0	0	10.2	3.63				1								2	1				14.857	14.857	2	5.9765E-07	8835	DP690-12	197.6	50.655			2.1468	2.3312	NaN	1	0	Median	482590000	176250000	306340000	9232	829;1127	8700	18246;18247;18248;18249	44557;44558;44559;44560;44561	44558		4	9606
LQIEDFEAR	0	1	Unmodified	1119.556	0.55603811	2290	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	yes	yes	0	0	0	16	0																1	17.221	17.221	2	0.013846	11392	DP690-16	85.676	28.955			0.69154	0.80429	NaN	1	0	Median	12849000	8098700	4750000	9233	2290	8701	18250	44562;44563;44564	44564		3	9606
LQIFSVEGQK	1	0	Unmodified	1147.6237	0.62372375	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	9.5	0.5									1	1							16.86	16.86	2	5.2353E-05	12175	DP690-10	185.55	106.78			0.72693	0.89885	2.0618	2	0	Median	231520000	130840000	100670000	9234	13	8702	18251;18252	44565;44566;44567;44568;44569;44570	44566		6	9606
LQITPDSNGEQFSSLIQR	0	1	Unmodified	2032.0225	0.022532941	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	3	0			1														19.183	19.183	2	0.0028226	14101	DP690-3	140.31	96.703			NaN	NaN	NaN	0	0	Median	0	0	0	9235	1911	8703	18253	44571	44571		1	9606
LQIVEMPLAHK	1	0	Oxidation (M)	1293.7115	0.7114929	819	P50454	SERPINH1	Serpin H1	yes	yes	0	1	0	10.3	3.77					1								2				15.378	15.378	3	0.0046189	7052	DP690-13	76.332	52.954			0.78056	0.92508	8.7884	3	0	Plateau	411620000	226980000	184650000	9236	819	8704	18254;18255;18256	44572;44573;44574;44575;44576	44573	1228	4	9606
LQIVEMPLAHK	1	0	Unmodified	1277.7166	0.71657828	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	9	4					1								1				16.174	16.174	3	6.269E-05	10362	DP690-13	123.67	101.44			1.0839	1.1447	27.872	2	0	Median	328790000	152680000	176110000	9237	819	8704	18257;18258	44577;44578;44579;44580;44581;44582;44583;44584	44579		8	9606
LQKEEEIEFLYNENTVR	1	1	Unmodified	2153.0641	0.064063405	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	10	0										1							17.435	17.435	3	0.00010705	13038	DP690-10	111.58	80.465			0.70142	0.85893	NaN	1	0	Median	115800000	68314000	47482000	9238	721	8705	18259	44585	44585		1	9606
LQLDSPEDAEFIVAK	1	0	Unmodified	1673.8512	0.85121708	168	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	4	0				1													19.248	19.248	2	0.0011311	13862	DP690-4	95.477	72.101			1.2554	1.354	NaN	1	0	Median	7240400	3079000	4161400	9239	168	8706	18260	44586;44587;44588;44589	44587		4	9606
LQLEACETR	0	1	Unmodified	1118.539	0.53900784	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.2	3.97		1							1	1	1			1			13.176	13.176	2	7.5614E-05	6837	DP690-10	174.52	113.84			0.81575	0.91978	3.7878	3	0	Plateau	954670000	449720000	504950000	9240	1319	8707	18261;18262;18263;18264;18265	44590;44591;44592;44593;44594;44595;44596;44597;44598;44599;44600;44601;44602;44603	44592		14	9606
LQLEATER	0	1	Unmodified	958.50836	0.50835964	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								12.679	12.679	2	0.057017	5605	DP690-9	131.03	40.662			1.0864	1.2027	NaN	1	0	Median	146170000	78776000	67392000	9241	1319	8708	18266	44604	44604		0	9606
LQLEETDHQK	1	0	Unmodified	1239.6095	0.60953025	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	7.33	3.77		1								2							10.671	10.671	2;3	0.00016125	3250	DP690-10	146.79	105.9			0.83092	0.91031	45.264	3	0	Plateau	849110000	457240000	391870000	9242	1319	8709	18267;18268;18269	44605;44606;44607;44608;44609;44610;44611;44612	44609		8	9606
LQLEYCSLSAASCEPLASVLR	0	1	Unmodified	2366.161	0.16101703	482	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	5	0					1												21.595	21.595	2	0.0079854	16349	DP690-5	103.13	72.134			NaN	NaN	NaN	0	0	Median	0	0	0	9243	482	8710	18270	44613	44613		1	9606
LQLLEDDKENR	1	1	Unmodified	1371.6994	0.69940789	439	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	11	0											1						13.414	13.414	3	4.4326E-05	7062	DP690-11	126.03	59.362			1.0755	1.2218	NaN	1	0	Median	150790000	62934000	87853000	9244	439	8711	18271	44614;44615	44615		2	9606
LQLLLLNPLK	1	0	Unmodified	1163.7642	0.7641804	1542	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	2	0		1															21.668	21.668	2	0.011017	15452	DP690-2	82.241	82.241			1.6787	1.6497	NaN	1	0	Median	1246300	503690	742630	9245	1542	8712	18272	44616	44616		1	9606
LQLLLSSEQFITGLIR	0	1	Unmodified	1830.0615	0.06148463	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								25.091	25.091	2	0.00015622	20691	DP690-9	119.39	95.535			0.93748	1.1404	NaN	1	0	Median	1983400	949580	1033900	9246	2272	8713	18273	44617;44618;44619	44619		3	9606
LQLLSNLFHGMDK	1	0	Oxidation (M)	1530.7864	0.78644876	1528	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	1	0	6	0						1											18.596	18.596	3	0.025156	12443	DP690-6	79.886	42.093			NaN	NaN	NaN	0	0	Median	4370200	0	4370200	9247	1528	8714	18274	44620	44620	2204	1	9606
LQLNGNLQLELAQVLAQERPK	1	1	Unmodified	2374.3332	0.33324281	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		1															21.528	21.528	3	0.00025312	15235	DP690-2	96.55	88.461			0.80809	0.79549	NaN	1	0	Median	4426700	2355600	2071100	9248	789	8715	18275	44621	44621		1	9606
LQLNYLGNYIPR	0	1	Unmodified	1462.7932	0.79324869	1097	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	11	0											3						20.253	20.253	2	0.001861	17021	DP690-11	96.331	96.331			0.83982	1.0012	NaN	1	0	Median	42156000	19705000	22450000	9249	1097	8716	18276;18277;18278	44622;44623;44624	44622		3	9606
LQLQYTLQELVSK	1	0	Unmodified	1561.8716	0.87155859	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								21.14	21.14	2	0.017285	16244	DP690-9	99.215	38.652			NaN	NaN	NaN	0	0	Median	3171200	3171200	0	9250	1762	8717	18279	44625	44625		1	9606
LQLSLADFR	0	1	Unmodified	1061.5869	0.58694431	94	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	12	0												1					19.667	19.667	2	0.00062355	15419	DP690-12	145.16	81.591			0.94899	1.1259	NaN	1	0	Median	49303000	24548000	24755000	9251	94	8718	18280	44626;44627	44626		2	9606
LQLWDTAGQER	0	1	Unmodified	1315.6521	0.65206377	543	Q9NRW1;P20340;Q14964	RAB6B;RAB6A;RAB39A	Ras-related protein Rab-6B;Ras-related protein Rab-6A;Ras-related protein Rab-39A	yes	no	0	0	0	15	0															1		16.53	16.53	2	0.0017686	10806	DP690-15	136.57	0			NaN	NaN	NaN	0	0	Median	0	0	0	9252	543	8719	18281	44628	44628		1	9606
LQLYGPTNIAPIIQK	1	0	Unmodified	1667.961	0.9610423	1813	Q96A23	CPNE4	Copine-4	yes	yes	0	0	0	12	0												2					19.353	19.353	2	0.010612	15039	DP690-12	103.43	43.369			NaN	NaN	NaN	0	0	Median	5894200	5894200	0	9253	1813	8720	18282;18283	44629;44630	44629		2	9606
LQMEAGLCEEQLNQADALLQSDVR	0	1	Oxidation (M)	2746.2902	0.2901933	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	10	0.816									1	1	1						20.344	20.344	2	5.6547E-37	17239	DP690-10	220.97	193.64			0.6469	0.8098	NaN	1	0	Median	65558000	39781000	25777000	9254	1319	8721	18284;18285;18286	44631;44632;44633;44634;44635	44632	2027	5	9606
LQMEAGLCEEQLNQADALLQSDVR	0	1	Unmodified	2730.2953	0.29527868	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	11	0											1						21.303	21.303	2	2.3626E-05	18332	DP690-11	125.61	87.417			NaN	NaN	NaN	0	0	Median	0	0	0	9255	1319	8721	18287	44636	44636		1	9606
LQMEAPHIIVGTPGR	0	1	Oxidation (M)	1633.861	0.86101068	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	1	0	13	0													1				14.031	14.031	2	3.4194E-05	7356	DP690-13	141.54	121.25			0.69571	0.85488	NaN	1	0	Median	26945000	13542000	13403000	9256	927	8722	18288	44637;44638;44639;44640	44638	1435	4	9606
LQMEAPHIIVGTPGR	0	1	Unmodified	1617.8661	0.86609606	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	13	0													1				16.195	16.195	3	0.015433	10426	DP690-13	82.651	52.714			NaN	NaN	NaN	0	0	Median	80160000	80160000	0	9257	927	8722	18289	44641	44641		1	9606
LQMEQQQQLQQR	0	1	Oxidation (M)	1572.7678	0.76783858	2207	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	1	0	12	4								1								1	10.567	10.567	2	2.186E-07	3081	DP690-16	198.61	158.56			0.90354	1.0291	4.4321	2	0	Median	171490000	91464000	80026000	9258	2207	8723	18290;18291	44642;44643;44644;44645;44646;44647;44648	44645	2681	7	9606
LQMEQQQQLQQR	0	1	Unmodified	1556.7729	0.77292396	2207	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	0	0	16	0																1	12.697	12.697	2	7.9683E-25	5552	DP690-16	215.93	149.88			NaN	NaN	NaN	0	0	Median	4407500	4407500	0	9259	2207	8723	18292	44649;44650	44650		2	9606
LQMEVNDIKK	2	0	Unmodified	1216.6486	0.64855829	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	1	13	0													1				12.717	12.717	3	0.006414	5531	DP690-13	80.916	37.498			NaN	NaN	NaN	0	0	Median	33227000	33227000	0	9260	1823	8724	18293	44651	44651		1	9606
LQMPVLGMTPADDFCQGTK	1	0	2 Oxidation (M)	2139.9639	0.96389713	104	O14531	DPYSL4	Dihydropyrimidinase-related protein 4	yes	yes	0	2	0	4	0				1													16.997	16.997	2	0.057195	11195	DP690-4	70.889	52.158			NaN	NaN	NaN	0	0	Median	1516800	1516800	0	9261	104	8725	18294	44652	44652		1	9606
LQMTIENMNHLK	1	0	2 Oxidation (M)	1502.7221	0.72213394	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	2	0	4	0				1													10.663	10.663	3	0.00012278	3132	DP690-4	161.67	124.72			0.9468	1.0246	NaN	1	0	Median	28270000	13764000	14506000	9262	2000	8726	18295	44653;44654;44655;44656	44656	2536;2537	4	9606
LQNEILK	1	0	Unmodified	856.50182	0.5018177	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	12	0												1					12.695	12.695	2	0.059128	5760	DP690-12	124.34	19.074			NaN	NaN	NaN	0	0	Median	0	0	0	9263	1131	8727	18296	44657	44657		1	9606
LQNGLQALLISDLSNMEGK	1	0	Oxidation (M)	2059.062	0.061954915	194	O43847	NRD1	Nardilysin	yes	yes	0	1	0	3	0			1														21.821	21.821	2	0.00091603	17332	DP690-3	98.582	98.582			0.69091	0.7218	NaN	1	0	Median	3004700	1593600	1411100	9264	194	8728	18297	44658;44659	44658	206	2	9606
LQNIFLGLVNIIEEK	1	0	Unmodified	1741.9978	0.99782174	133	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	11	0											1						25.93	25.93	2	0.00017815	23914	DP690-11	118.76	98.651			0.90912	1.0648	NaN	1	0	Median	2372000	1232400	1139500	9265	133	8729	18298	44660	44660		1	9606
LQNKEHVIEALRR	1	2	Unmodified	1604.9111	0.91107242	601	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	2	15	0															1		10.742	10.742	4	0.024339	3172	DP690-15	69.261	40.9			0.89915	0.9572	NaN	1	0	Median	93575000	49921000	43654000	9266	601	8730	18299	44661;44662	44661		2	9606
LQNNNVYTIAK	1	0	Unmodified	1276.6776	0.67755023	1013	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	11	0											1						13.551	13.551	2	0.018586	7277	DP690-11	99.815	49.01			NaN	NaN	NaN	0	0	Median	38277000	0	38277000	9267	1013	8731	18300	44663;44664	44663		2	9606
LQNPAITGPAVPYSR	0	1	Unmodified	1582.8467	0.84674083	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	3.5	0.5			1	1													15.951	15.951	2	2.368E-05	9925	DP690-3	163.12	134.94			0.70932	0.79043	NaN	1	0	Median	41910000	22057000	19853000	9268	1911	8732	18301;18302	44665;44666;44667;44668;44669	44668		5	9606
LQNTGVADGYPVR	0	1	Unmodified	1388.7048	0.70482762	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	9.56	3.59			1	1					1	1	3	1			1		13.793	13.793	2	0.00015821	7766	DP690-11	172.98	105.08			0.69575	0.81395	9.054	8	0	Median	841540000	480000000	361540000	9269	1758	8733	18303;18304;18305;18306;18307;18308;18309;18310;18311	44670;44671;44672;44673;44674;44675;44676;44677;44678;44679;44680;44681;44682;44683;44684;44685;44686;44687;44688;44689;44690;44691;44692;44693	44679		24	9606
LQNVQIALDYLR	0	1	Unmodified	1444.8038	0.80381338	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.8	3.54		1							1	1	1	1					20.133	20.133	2	4.2689E-08	14948	DP690-9	208.63	154.88			0.81402	0.93356	6.8007	5	0	Median	692810000	376820000	315990000	9270	1319	8734	18312;18313;18314;18315;18316	44694;44695;44696;44697;44698;44699;44700;44701;44702;44703;44704;44705;44706	44706		13	9606
LQPAYQVTLPGQEPIVK	1	0	Unmodified	1880.0407	0.040749188	717	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	12	0												1					18.124	18.124	2	0.00053863	13371	DP690-12	103.11	82.679			0.47834	0.57599	NaN	1	0	Median	17258000	10628000	6630100	9271	717	8735	18317	44707;44708	44707		2	9606
LQPFATEADVEEALR	0	1	Unmodified	1687.8417	0.84171503	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	7.5	4.74			4						1		1			2			20.059	20.059	2	1.4162E-07	15214	DP690-3	172.61	122.42			0.732	0.80497	88.396	3	0	Median	505780000	301140000	204640000	9272	652	8736	18318;18319;18320;18321;18322;18323;18324;18325	44709;44710;44711;44712;44713;44714;44715;44716;44717;44718;44719;44720;44721;44722;44723;44724	44718		16	9606
LQPLSPVPSDIEISR	0	1	Unmodified	1649.8988	0.89883598	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	8.33	3.77			1								2						18.469	18.469	2	6.7999E-07	14381	DP690-11	188.27	146.06			0.6767	0.78591	2.4834	3	0	Median	217120000	128700000	88419000	9273	1504	8737	18326;18327;18328	44725;44726;44727;44728;44729;44730;44731;44732;44733	44728		9	9606
LQPQEISPPPTANLDR	0	1	Unmodified	1774.9214	0.92136233	1117	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	3	0			1														15.801	15.801	2	0.0010727	9745	DP690-3	135.02	75.6			NaN	NaN	NaN	0	0	Median	3341300	3341300	0	9274	1117	8738	18329	44734;44735	44735		2	9606
LQPSQLSSNLYNK	1	0	Unmodified	1490.7729	0.77290718	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								15.298	15.298	2	0.032723	8932	DP690-9	79.07	11.054			NaN	NaN	NaN	0	0	Median	3393300	3393300	0	9275	2272	8739	18330	44736	44736		1	9606
LQPSSSPENSLDPFPPR	0	1	Unmodified	1866.9112	0.91119158	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	11	0											1						17.642	17.642	2	0.0002581	13252	DP690-11	112.08	68.787			0.70032	0.83631	NaN	1	0	Median	31364000	19489000	11874000	9276	1755	8740	18331	44737;44738;44739	44738		3	9606
LQPSSTSESMDQLLNK	1	0	Oxidation (M)	1792.8513	0.85129344	1951	Q99700	ATXN2	Ataxin-2	yes	yes	0	1	0	10	0										1							13.834	13.834	2	0.0007363	7835	DP690-10	107.39	79.155			0.54999	0.67547	NaN	1	0	Median	33912000	21899000	12012000	9277	1951	8741	18332	44740;44741;44742;44743	44741	2489	4	9606
LQPTWNDLGDKYNSMEDAK	2	0	Oxidation (M)	2240.0056	0.005562248	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	1	1	5	0					1												15.47	15.47	3	0.022907	8652	DP690-5	51.611	33.073			1.4129	1.3784	NaN	1	0	Median	40243000	15191000	25052000	9278	1675	8742	18333	44744;44745	44745	2284	2	9606
LQQAKDEILEWESR	1	1	Unmodified	1743.8792	0.87916317	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	1	4	0				1													16.502	16.502	3	0.013838	10533	DP690-4	62.377	43.302			0.66292	0.75607	NaN	1	0	Median	6530300	3726200	2804100	9279	1227	8743	18334	44746	44746		1	9606
LQQALAEQQQQNNTSGK	1	0	Unmodified	1884.929	0.92896691	2465	Q9Y3C7	MED31	Mediator of RNA polymerase II transcription subunit 31	yes	yes	0	0	0	16	0																1	10.791	10.791	2	6.884800000000001E-34	3328	DP690-16	315.41	267.29			0.83086	0.97265	NaN	1	0	Median	14885000	8252300	6633000	9280	2465	8744	18335	44747;44748;44749;44750	44748		4	9606
LQQEETQLEQSIQAGR	0	1	Unmodified	1856.9228	0.9228189	2310	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	11.5	0.5											1	1					16.215	16.215	2	1.3445E-08	10702	DP690-12	198.57	139.03			NaN	NaN	NaN	0	0	Median	0	0	0	9281	2310	8745	18336;18337	44751;44752	44752		2	9606
LQQELDDLLVDLDHQR	0	1	Unmodified	1948.9854	0.98541915	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	4	3.46		3								1							20.715	20.715	2;3	1.3693E-24	14641	DP690-2	275.19	239.36			0.94506	1.1422	18.405	3	0	Plateau	215550000	111940000	103610000	9282	668	8746	18338;18339;18340;18341	44753;44754;44755;44756;44757;44758;44759;44760;44761	44759		9	9606
LQQENSILR	0	1	Unmodified	1099.5986	0.59857163	2303	Q9P2E9;Q8N4C6	RRBP1;NIN	Ribosome-binding protein 1;Ninein	yes	no	0	0	0	11	0											1						13.168	13.168	2	0.048438	6675	DP690-11	94.114	35.333			NaN	NaN	NaN	0	0	Median	0	0	0	9283	2303	8747	18342	44762	44762		1	9606
LQQESTFLFHGNK	1	0	Unmodified	1547.7732	0.77324153	2379	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	12	0												2					14.563	14.563	3	0.01556	8464	DP690-12	65.043	0			NaN	NaN	NaN	0	0	Median	32808000	0	32808000	9284	2379	8748	18343;18344	44763;44764	44764		2	9606
LQQLQNQIR	0	1	Unmodified	1139.6411	0.64110515	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	9	3.16			1						1	1	1	1					12.777	12.777	2	5.7846E-05	6075	DP690-11	175.75	136.96			0.80482	0.91121	12.83	5	0	Median	652320000	363010000	289300000	9285	1758	8749	18345;18346;18347;18348;18349	44765;44766;44767;44768;44769;44770;44771;44772;44773;44774;44775;44776;44777;44778	44769		14	9606
LQQQAALSPTTAPAVSSVSK	1	0	Unmodified	1983.0637	0.063669474	1763	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	12	0												3					14.814	14.814	2	7.1212E-09	8712	DP690-12	180.95	143.42			NaN	NaN	NaN	0	0	Median	12759000	0	12759000	9286	1763	8750	18350;18351;18352	44779;44780;44781	44780		3	9606
LQQQLTQAQETLK	1	0	Unmodified	1527.8257	0.82567103	2489	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	14.5	1.5													1			1	14.256	14.256	2	9.2788E-11	7638	DP690-13	271.62	210.39			0.81269	0.9226	NaN	1	0	Median	124230000	64726000	59502000	9287	2489	8751	18353;18354	44782;44783;44784;44785;44786	44784		5	9606
LQQQQAQQPLQQQQQR	0	1	Unmodified	1977.014	0.01403394	2233	Q9NVH2	INTS7	Integrator complex subunit 7	yes	yes	0	0	0	11	0											1						10.963	10.963	2	9.772300000000001E-33	3520	DP690-11	308.92	271.32			0.77358	0.92482	NaN	1	0	Median	30099000	16585000	13514000	9288	2233	8752	18355	44787;44788;44789;44790;44791;44792	44790		6	9606
LQQQQQQQQLAQMK	1	0	Oxidation (M)	1742.8734	0.87336628	1512	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	1	0	10	0										2							10.549	10.549	2	1.4549E-21	3089	DP690-10	240.13	184.87			0.83639	1.0327	NaN	1	0	Median	125680000	67221000	58462000	9289	1512	8753	18356;18357	44793;44794	44794	2199	2	9606
LQQQQQQQQLAQMK	1	0	Unmodified	1726.8785	0.87845166	1512	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	10	0										3							12.476	12.476	2	6.665000000000001E-35	5850	DP690-10	240.13	174.5			1.0695	1.3148	NaN	1	0	Median	56942000	21572000	35369000	9290	1512	8753	18358;18359;18360	44795;44796;44797;44798;44799	44797		5	9606
LQQQQRPEDAEDGAEGGGK	1	1	Unmodified	2011.9195	0.91952443	1141	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	1	3	0			1														10.345	10.345	3	0.013664	2599	DP690-3	88.486	44.695			NaN	NaN	NaN	0	0	Median	7329100	7329100	0	9291	1141	8754	18361	44800	44800		1	9606
LQQTEAELR	0	1	Unmodified	1086.5669	0.56693715	597	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	3	0			1														11.508	11.508	2	0.014771	4187	DP690-3	84.743	25.928			1.6414	1.8313	NaN	1	0	Median	6530000	2057400	4472600	9292	597	8755	18362	44801;44802	44802		2	9606
LQQTQSLHSLR	0	1	Unmodified	1309.7102	0.71024735	78	O00273	DFFA	DNA fragmentation factor subunit alpha	yes	yes	0	0	0	6	0						1											11.024	11.024	3	0.029948	3528	DP690-6	55.452	31.635			1.0107	1.1553	NaN	1	0	Median	5558300	2685200	2873100	9293	78	8756	18363	44803;44804	44803		2	9606
LQQTYAALNSK	1	0	Unmodified	1235.651	0.65100113	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	7.33	3.77		1								2							12.948	12.948	2	8.0473E-05	5269	DP690-2	128.81	128.81			1.4731	1.4835	NaN	1	0	Median	10499000	3986200	6513300	9294	766	8757	18364;18365;18366	44805;44806;44807;44808;44809;44810	44807		6	9606
LQQVLQMESHIQSTSDR	0	1	Oxidation (M)	2014.9742	0.97420254	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	1	0	5.67	3.77			2								1						13.042	13.042	3	1.0248E-07	5976	DP690-3	153.22	127.4			1.0383	1.1992	21.459	2	0	Median	151540000	77402000	74140000	9295	1300	8758	18367;18368;18369	44811;44812;44813;44814;44815	44813	1990	5	9606
LQQVLQMESHIQSTSDR	0	1	Unmodified	1998.9793	0.97928792	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	11	0											1						15.212	15.212	3	1.5519E-06	9741	DP690-11	132.15	105.79			0.55486	0.66202	NaN	1	0	Median	119580000	64589000	54996000	9296	1300	8758	18370	44816;44817	44817		2	9606
LQQYYIFIPSK	1	0	Unmodified	1398.7547	0.75473792	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	13	0													1				19.21	19.21	2	0.002051	14379	DP690-13	97.597	97.597			0.73457	0.81407	NaN	1	0	Median	229650000	133920000	95734000	9297	2090	8759	18371	44818;44819;44820;44821	44818		4	9606
LQSAMTEGGVVLREPQR	0	2	Oxidation (M)	1885.968	0.96799495	2092	Q9H0U6	MRPL18	39S ribosomal protein L18, mitochondrial	yes	yes	0	1	1	16	0																1	13.183	13.183	3	0.00016196	6136	DP690-16	105.99	84.898			0.80713	0.85276	NaN	1	0	Median	31127000	16628000	14498000	9298	2092	8760	18372	44822;44823;44824	44822	2608	3	9606
LQSEPESIR	0	1	Unmodified	1057.5404	0.54038805	435	P09496	CLTA	Clathrin light chain A	yes	yes	0	0	0	15	0															1		11.453	11.453	2	0.057134	4218	DP690-15	65.246	19.231			0.62791	0.72885	NaN	1	0	Median	27812000	15830000	11982000	9299	435	8761	18373	44825	44825		1	9606
LQSGICHLFR	0	1	Unmodified	1229.6339	0.63391128	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	8	4				1								1					15.069	15.069	3	0.0037488	9152	DP690-12	87.258	39.414			0.9035	1.0591	17.248	2	0	Median	91343000	50758000	40585000	9300	495	8762	18374;18375	44826;44827;44828;44829;44830	44828		5	9606
LQSIGTENTEENRR	0	2	Unmodified	1645.802	0.80197548	363	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	1	6	0						1											10.57	10.57	3	8.2388E-05	2991	DP690-6	112.5	74.053			1.4267	1.5345	NaN	1	0	Median	61909000	25248000	36660000	9301	363	8763	18376	44831;44832	44832		2	9606
LQSLDTSFLEQGDVTTPTSEQVEK	1	0	Unmodified	2651.2814	0.28138598	1106	Q03426	MVK	Mevalonate kinase	yes	yes	0	0	0	14	0														1			19.296	19.296	2	6.1999E-06	14679	DP690-14	137.91	108.95			NaN	NaN	NaN	0	0	Median	0	0	0	9302	1106	8764	18377	44833	44833		1	9606
LQSLPFALTHLNLK	1	0	Unmodified	1593.9243	0.92426287	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10.5	0.5										1	1						19.621	19.621	3	1.099E-06	16200	DP690-10	184.96	147.44			0.87058	1.0745	NaN	1	0	Median	124420000	73065000	51355000	9303	1254	8765	18378;18379	44834;44835;44836;44837;44838;44839	44834		6	9606
LQSLQSELQFK	1	0	Unmodified	1319.7085	0.70851601	1760	Q8WXE1	ATRIP	ATR-interacting protein	yes	yes	0	0	0	9	4					1								1				19.03	19.03	2	0.003112	14244	DP690-13	91.867	91.867			0.99453	1.0585	2.5609	2	0	Median	197730000	95500000	102230000	9304	1760	8766	18380;18381	44840;44841;44842;44843;44844	44841		5	9606
LQSQLQENEEFQK	1	0	Unmodified	1619.7791	0.77911477	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	10	0										1							13.832	13.832	2	0.00018937	7830	DP690-10	169.58	128.96			0.55253	0.67905	NaN	1	0	Median	35847000	18251000	17596000	9305	2411	8767	18382	44845	44845		1	9606
LQSSASSIHSLQQQLK	1	0	Unmodified	1753.9323	0.93226137	1610	Q8IX04	UEVLD	Ubiquitin-conjugating enzyme E2 variant 3	yes	yes	0	0	0	5	0					1												14.276	14.276	3	0.053315	7255	DP690-5	43.05	25.349			1.1734	1.1714	NaN	1	0	Median	36146000	20197000	15948000	9306	1610	8768	18383	44846	44846		1	9606
LQSSQEPEAPPPR	0	1	Unmodified	1434.7103	0.71030693	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	6.67	3.77				2								1					11.045	11.045	2	8.7076E-11	3164	DP690-4	275.57	238.02			0.56154	0.63233	NaN	1	0	Median	31686000	21395000	10291000	9307	2405	8769	18384;18385;18386	44847;44848;44849;44850;44851;44852;44853;44854	44850		8	9606
LQSVQALTEIQEFISFISK	1	0	Unmodified	2180.1729	0.17288557	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	10.2	0.748									1	2	2						27.771	27.771	2	6.747600000000001E-30	23065	DP690-9	238.83	238.83			0.8376	1.0224	4.937	3	0	Plateau	48411000	25736000	22675000	9308	1046	8770	18387;18388;18389;18390;18391	44855;44856;44857;44858;44859;44860;44861;44862;44863;44864;44865	44865		11	9606
LQTASDESYKDPTNIQSK	2	0	Unmodified	2023.9698	0.96982867	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							12.64	12.64	3	5.0538E-08	5993	DP690-10	144.08	116.05			0.66544	0.80193	NaN	1	0	Median	127060000	76191000	50867000	9309	1236	8771	18392	44866;44867;44868;44869;44870	44866		5	9606
LQTLVSEQPNKDVVEQMEK	2	0	Oxidation (M)	2230.1151	0.1151127	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	1	1	10	0										1							13.937	13.937	3	0.053878	7979	DP690-10	40.047	40.047			0.99341	1.2762	NaN	1	0	Median	55039000	28872000	26166000	9310	1570	8772	18393	44871	44871		1	9606
LQTMKEELDFQK	2	0	Unmodified	1508.7545	0.75447993	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	11	0											2						14.774	14.774	2;3	1.7657E-05	8985	DP690-11	128.08	83.252			0.7604	0.84593	NaN	1	0	Median	258740000	142230000	116510000	9311	359	8773	18394;18395	44872;44873;44874;44875;44876	44873		5	9606
LQTMKEELDFQK	2	0	Oxidation (M)	1524.7494	0.74939455	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	1	1	11	0											1						13.011	13.011	3	0.017968	6450	DP690-11	92.295	53.28			NaN	NaN	NaN	0	0	Median	0	0	0	9312	359	8773	18396	44877	44877	371	1	9606
LQTMYEMETSGK	1	0	2 Oxidation (M)	1448.6163	0.61633146	2513	Q9Y619	SLC25A15	Mitochondrial ornithine transporter 1	yes	yes	0	2	0	15	0															1		11.412	11.412	2	0.00016295	4065	DP690-15	163.66	152.03			0.84593	0.99701	NaN	1	0	Median	30938000	15165000	15773000	9313	2513	8774	18397	44878;44879;44880;44881;44882;44883	44882	2947;2948	6	9606
LQTQASATVAIPK	1	0	Unmodified	1326.7507	0.75071518	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							14.137	14.137	2	0.00038459	8179	DP690-10	110.39	70.329			0.724	0.88798	NaN	1	0	Median	164020000	97788000	66228000	9314	1071	8775	18398	44884;44885;44886;44887	44884		4	9606
LQTQGLGTALK	1	0	Unmodified	1128.6503	0.65027285	1870	Q96HE7;Q86YB8	ERO1L;ERO1LB	ERO1-like protein alpha;ERO1-like protein beta	yes	no	0	0	0	4	0				1													14.241	14.241	2	0.00010139	7502	DP690-4	140.45	71.659			1.1874	1.286	NaN	1	0	Median	27171000	12401000	14769000	9315	1870	8776	18399	44888;44889	44888		2	9606
LQTSEAALSSSQAEVASLR	0	1	Unmodified	1946.9909	0.99089846	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11.5	0.5											1	1					17.064	17.064	2	1.1147E-33	12405	DP690-11	277.31	277.31			0.91336	1.1	7.5188	2	0	Median	69516000	31253000	38264000	9316	2024	8777	18400;18401	44890;44891;44892;44893;44894;44895	44890		6	9606
LQTSLANLHQK	1	0	Unmodified	1251.6935	0.69353465	2306	Q9P2K8	EIF2AK4	Eukaryotic translation initiation factor 2-alpha kinase 4	yes	yes	0	0	0	10	0										1							12.117	12.117	3	0.060506	5355	DP690-10	45.764	45.764			0.83529	1.0319	NaN	1	0	Median	78095000	40673000	37422000	9317	2306	8778	18402	44896	44896		1	9606
LQTSSVLVSGLR	0	1	Unmodified	1258.7245	0.72450043	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														16.624	16.624	2	5.4524E-05	10766	DP690-3	137.98	137.98			1.0258	1.1303	NaN	1	0	Median	48028000	23011000	25017000	9318	561	8779	18403	44897;44898;44899;44900	44898		4	9606
LQTTDNLLPMSPEEFDEVSR	0	1	Oxidation (M)	2336.0842	0.084206499	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	1	0	3	0			1														19.32	19.32	2	3.2143E-07	14310	DP690-3	143.64	112.76			0.80932	0.90577	NaN	1	0	Median	7193300	4276500	2916700	9319	724	8780	18404	44901;44902	44902	1068	2	9606
LQTTVHTLQVIIDGLSQPESFDFR	0	1	Unmodified	2743.4181	0.41809466	1658	Q8N5C6	SRBD1	S1 RNA-binding domain-containing protein 1	yes	yes	0	0	0	11	0											1						23.829	23.829	3	0.00166	21520	DP690-11	97.253	71.845			NaN	NaN	NaN	0	0	Median	3020800	3020800	0	9320	1658	8781	18405	44903	44903		1	9606
LQVAGEITTGPR	0	1	Unmodified	1240.6776	0.67755023	2359;274	O75746;Q9UJS0	SLC25A12;SLC25A13	Calcium-binding mitochondrial carrier protein Aralar1;Calcium-binding mitochondrial carrier protein Aralar2	no	no	0	0	0	12	0												1					14.472	14.472	2	5.62E-05	8239	DP690-12	206.73	121.57			0.76085	0.84115	NaN	1	0	Median	299570000	171480000	128090000	9321	274;2359	8782	18406	44904;44905;44906;44907	44905		4	9606
LQVELDNVTGLLSQSDSK	1	0	Unmodified	1945.0004	0.0004005156	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	6	4		1								1							20.763	20.763	2	3.9102999999999997E-38	14390	DP690-2	298.78	168.68			0.99379	1.1072	3.7287	2	0	Median	58649000	29254000	29394000	9322	668	8783	18407;18408	44908;44909;44910;44911;44912;44913;44914;44915	44914		8	9606
LQVEPAVDTSGVQCYGPGIEGQGVFR	0	1	Unmodified	2762.3334	0.33337875	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.2	3.97		1							1	1	1			1			19.479	19.479	2	9.9139E-46	15840	DP690-11	238.05	216.63			0.70705	0.80067	14.659	3	0	Plateau	464420000	271210000	193210000	9323	549	8784	18409;18410;18411;18412;18413	44916;44917;44918;44919;44920;44921;44922;44923;44924;44925;44926;44927;44928	44920		13	9606
LQVTMPGIK	1	0	Oxidation (M)	1001.558	0.55795237	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9.5	0.5									1	1							13.191	13.191	2	0.010933	6866	DP690-10	93.374	57.756			0.82493	1.018	15.014	2	0	Median	132870000	82253000	50614000	9324	1145	8785	18414;18415	44929;44930;44931;44932	44929	1787	4	9606
LQVTNVLSQPLTQATVK	1	0	Unmodified	1839.0466	0.046562847	376	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	12	0												1					18.723	18.723	2	1.4102E-17	14182	DP690-12	213.99	213.99			0.80984	0.96582	NaN	1	0	Median	59796000	34238000	25558000	9325	376	8786	18416	44933;44934;44935;44936	44933		4	9606
LQVVDQPLPVR	0	1	Unmodified	1262.7347	0.73467118	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.67	0.471		1	2														16.237	16.237	2	5.2649E-06	9298	DP690-2	195.32	195.32			0.76073	0.78871	NaN	1	0	Median	187320000	108930000	78391000	9326	789	8787	18417;18418;18419	44937;44938;44939;44940;44941;44942;44943;44944;44945	44941		9	9606
LQVVLNESNADTYAGRPLPSK	1	1	Unmodified	2271.1859	0.18590988	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							15.817	15.817	3	3.6647E-15	10817	DP690-10	168.79	140.86			0.58618	0.68987	NaN	1	0	Median	208480000	135930000	72554000	9327	13	8788	18420	44946;44947	44947		2	9606
LQYFMEQFYGIIR	0	1	Unmodified	1706.849	0.84904901	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							22.722	22.722	2	3.2516E-08	17964	DP690-9	198.61	198.61			0.82711	1.0316	2.4353	2	0	Median	41446000	21544000	19902000	9328	1046	8789	18421;18422	44948;44949;44950;44951;44952;44953;44954;44955;44956;44957	44952		10	9606
LQYFMEQFYGIIR	0	1	Oxidation (M)	1722.844	0.84396364	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									1	1							20.811	20.811	2	0.00017285	15796	DP690-9	171.33	143.9			0.82901	1	NaN	1	0	Median	67304000	52829000	14475000	9329	1046	8789	18423;18424	44958;44959;44960;44961;44962	44960	1615	5	9606
LQYIITNVLK	1	0	Unmodified	1203.7227	0.72270951	1610	Q8IX04	UEVLD	Ubiquitin-conjugating enzyme E2 variant 3	yes	yes	0	0	0	5	0					1												18.869	18.869	2	0.0084285	12942	DP690-5	85.862	53.111			1.0222	1.0227	NaN	1	0	Median	16483000	6777700	9705400	9330	1610	8790	18425	44963;44964;44965;44966	44964		4	9606
LRAELDEVNK	1	1	Unmodified	1185.6354	0.63535107	1104	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	1	12	0												1					11.939	11.939	3	0.023107	4733	DP690-12	79.07	46.178			NaN	NaN	NaN	0	0	Median	0	0	0	9331	1104	8791	18426	44967	44967		1	9606
LRDLEDSLAR	0	2	Unmodified	1186.6306	0.63060004	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	11.5	0.5											2	2					13.872	13.872	2;3	3.6096E-05	7793	DP690-11	132.32	87.161			0.46153	0.54085	126.93	4	0	Linear	614370000	218600000	395770000	9332	359	8792	18427;18428;18429;18430	44968;44969;44970;44971;44972;44973;44974;44975;44976;44977;44978;44979;44980;44981	44971		14	9606
LREAEETQSTLQAECDQYR	0	2	Unmodified	2326.0496	0.049552328	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	1	11	0											2						14.258	14.258	3	0.0012118	8339	DP690-11	130.02	90.358			NaN	NaN	NaN	0	0	Median	17810000	17810000	0	9333	2303	8793	18431;18432	44982;44983	44983		2	9606
LREDENAEPVGTTYQK	1	1	Unmodified	1848.8854	0.88537076	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	1	10.3	3.28			1						1		2	2		1			11.692	11.692	2;3	4.2883E-07	4567	DP690-11	198.81	154.44			0.73482	0.68531	5.5632	4	0	Linear	2093299999.9999998	1209800000	883510000	9334	1365	8794	18433;18434;18435;18436;18437;18438;18439	44984;44985;44986;44987;44988;44989;44990;44991;44992;44993;44994;44995;44996	44985		13	9606
LRENVFQEHQTLK	1	1	Unmodified	1640.8635	0.86345352	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	1	11.2	0.433											3	1					12.282	12.282	3;4	0.00022136	5359	DP690-11	108.23	91.353			0.93708	0.99854	2.1073	3	0	Median	827920000	379600000	448330000	9335	1267	8795	18440;18441;18442;18443	44997;44998;44999;45000;45001;45002;45003	44999		7	9606
LREQLQLLEEQHR	0	2	Unmodified	1690.9115	0.91146635	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									2	2							14.003	14.003	3;4	0.00039836	8033	DP690-10	103.14	85.041			0.82183	0.89089	7.551	4	0	Median	1248400000	669250000	579110000	9336	1319	8796	18444;18445;18446;18447	45004;45005;45006;45007;45008;45009;45010;45011;45012;45013;45014	45004		11	9606
LRETEILFHSSLLR	0	2	Unmodified	1712.9574	0.95735391	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	1	11	0											1						16.975	16.975	4	0.00040225	12216	DP690-11	96.371	96.371			0.97052	1.1964	NaN	1	0	Median	39462000	16546000	22915000	9337	2127	8797	18448	45015;45016;45017;45018	45015		4	9606
LREYEAALNSK	1	1	Unmodified	1292.6725	0.67246486	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	12	0												2					12.108	12.108	2;3	0.00032357	4879	DP690-12	131.42	97.496			0.65246	0.75165	NaN	1	0	Median	124450000	78526000	45929000	9338	544	8798	18449;18450	45019;45020;45021;45022;45023	45022		5	9606
LRGPSGGGEEPALSQYQR	0	2	Unmodified	1900.9391	0.93913766	1942	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	1	11	0											1						13.301	13.301	3	0.0076308	6942	DP690-11	60.093	60.093			1.0925	1.3467	NaN	1	0	Median	77501000	31790000	45711000	9339	1942	8799	18451	45024;45025	45025		2	9606
LRGYDYGPHFQGILEASLEGDSGR	0	2	Unmodified	2636.2619	0.26192836	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		1															18.962	18.962	4	0.023647	12390	DP690-2	40.986	24.711			0.58663	0.58592	NaN	1	0	Median	5200500	3321400	1879100	9340	789	8800	18452	45026;45027	45026		2	9606
LRIEEEIR	0	2	Unmodified	1056.5928	0.59275797	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								13.269	13.269	3	0.015099	6211	DP690-9	109.44	7.3716			NaN	NaN	NaN	0	0	Median	0	0	0	9341	1319	8801	18453	45028	45028		1	9606
LRIEHQTITTPSKK	2	1	Unmodified	1650.9417	0.94170385	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	2	14	0														2			10.414	10.414	3;4	4.1178E-05	2675	DP690-14	151.22	120.66			0.78727	0.94757	17.995	2	0	Median	124260000	68552000	55706000	9342	712	8802	18454;18455	45029;45030;45031	45030		3	9606
LRLDSIVIQQGR	0	2	Unmodified	1396.815	0.81504677	198;609	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	no	no	0	0	1	11	0											1						16.282	16.282	3	5.5569E-05	11282	DP690-11	102.4	102.4			0.77644	0.95713	NaN	1	0	Median	83199000	47857000	35342000	9343	198;609	8803	18456	45032;45033;45034	45032		3	9606
LRLEEYEQR	0	2	Unmodified	1234.6306	0.63060004	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	1	10	0										1							13.15	13.15	3	0.082184	6846	DP690-10	44.639	5.8858			1.0789	1.285	NaN	1	0	Median	39794000	19370000	20424000	9344	2411	8804	18457	45035	45035		1	9606
LRLESEGSPETLTNLR	0	2	Unmodified	1813.9534	0.95339074	2287	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	1	10	0										1							15.89	15.89	3	0.0002797	10831	DP690-10	97.129	97.129			0.74307	0.88503	NaN	1	0	Median	99627000	55387000	44241000	9345	2287	8805	18458	45036;45037	45037		2	9606
LRLPLDKEPAR	1	2	Unmodified	1306.7721	0.77211932	1319	Q15149	PLEC	Plectin	yes	yes	0	0	2	9.5	0.5									1	1							12.693	12.693	3	0.00028777	5396	DP690-9	111.52	96.264			0.65347	0.70658	8.2213	2	0	Median	330080000	187470000	142610000	9346	1319	8806	18459;18460	45038;45039;45040;45041;45042	45040		5	9606
LRPEAQPHPSAGPKPAESK	2	1	Unmodified	1996.049	0.049022463	1132	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	2	10	0										1							10.28	10.28	4	0.001403	2602	DP690-10	87.323	87.323			0.43704	0.49872	NaN	1	0	Median	144010000	93757000	50249000	9347	1132	8807	18461	45043;45044;45045;45046	45045		4	9606
LRPEDPVLK	1	1	Unmodified	1065.6182	0.61824444	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	1	10	0										1							12.138	12.138	2	0.010005	5359	DP690-10	109.48	109.48			0.75139	0.95423	NaN	1	0	Median	57315000	31674000	25641000	9348	1724	8808	18462	45047;45048	45047		2	9606
LRPLYDIPYMFEAR	0	2	Unmodified	1782.9127	0.9127119	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	1	11	0											1						20.564	20.564	3	0.0108	17421	DP690-11	64.04	45.668			0.69519	0.85698	NaN	1	0	Median	28662000	17243000	11419000	9349	1524	8809	18463	45049;45050;45051	45049		3	9606
LRPQSAQSSFPPSPGPSPDVQLATLAQR	0	2	Unmodified	2931.5203	0.52026832	2516	Q9Y679	AUP1	Ancient ubiquitous protein 1	yes	yes	0	0	1	14	0														2			17.78	17.78	3	3.4701E-10	13278	DP690-14	165.01	133.19			0.69997	0.82259	NaN	1	0	Median	59196000	45878000	13318000	9350	2516	8810	18464;18465	45052;45053;45054	45054		3	9606
LRPVDQLR	0	2	Unmodified	995.58761	0.58761301	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	1	11	0											1						11.534	11.534	2	0.043249	4429	DP690-11	101.54	6.873			0.71338	0.87939	NaN	1	0	Median	66661000	36749000	29912000	9351	272	8811	18466	45055	45055		0	9606
LRQEEPQSLQAAVR	0	2	Unmodified	1623.8693	0.86926718	616	P29590	PML	Protein PML	yes	yes	0	0	1	11	0											1						12.843	12.843	3	3.0515E-05	6241	DP690-11	124.07	91.545			0.64413	0.79404	NaN	1	0	Median	76708000	40345000	36364000	9352	616	8812	18467	45056;45057	45057		2	9606
LRQENMELAER	0	2	Oxidation (M)	1403.6827	0.68271197	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	1	1	11	0											1						10.452	10.452	3	0.022	2726	DP690-11	58.781	25.724			1.3099	1.6147	NaN	1	0	Median	136650000	58194000	78454000	9353	701	8813	18468	45058	45058	1028	1	9606
LRQENMELAER	0	2	Unmodified	1387.6878	0.68779734	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	1	11	0											2						11.894	11.894	2;3	0.0006165	4822	DP690-11	82.505	53.602			0.77892	0.96019	37.063	2	0	Median	118690000	49801000	68885000	9354	701	8813	18469;18470	45059;45060;45061;45062;45063	45062		5	9606
LRTEVIQLEDTLAQVR	0	2	Unmodified	1883.0476	0.04762548	238;1448	O75150;Q5VTR2	RNF40;RNF20	E3 ubiquitin-protein ligase BRE1B;E3 ubiquitin-protein ligase BRE1A	no	no	0	0	1	11	0											1						19.355	19.355	3	0.00068155	15742	DP690-11	89.374	69.71			0.88002	1.0848	NaN	1	0	Median	36549000	20477000	16072000	9355	238;1448	8814	18471	45064;45065	45064		2	9606
LRYEIDTGEETK	1	1	Unmodified	1452.7096	0.70963822	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	1	12	0												2					13.216	13.216	2	0.0060243	6455	DP690-12	134.75	81.665			NaN	NaN	NaN	0	0	Median	0	0	0	9356	1147	8815	18472;18473	45066;45067	45066		2	9606
LSAEENPDDSEVPSSSGINSTK	1	0	Unmodified	2262.0135	0.013543977	2504	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	11	0											1						14.161	14.161	2	1.5086000000000002E-54	8160	DP690-11	248.81	195.77			NaN	NaN	NaN	0	0	Median	11156000	11156000	0	9357	2504	8816	18474	45068;45069	45068		2	9606
LSAFVFPGELLLR	0	1	Unmodified	1460.8391	0.83913625	1349	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	12	0												1					23.634	23.634	2	2.7562E-05	20179	DP690-12	128.81	101.33			0.7708	0.94569	NaN	1	0	Median	3507800	1982100	1525700	9358	1349	8817	18475	45070;45071;45072;45073;45074	45074		5	9606
LSALFINLISDPSR	0	1	Unmodified	1544.8562	0.85624288	1729	Q8TF05	PPP4R1	Serine/threonine-protein phosphatase 4 regulatory subunit 1	yes	yes	0	0	0	3	0			1														22.389	22.389	2	7.0259E-05	17973	DP690-3	124.38	100.1			0.88807	0.98114	NaN	1	0	Median	4790100	2314600	2475500	9359	1729	8818	18476	45075;45076;45077;45078	45078		4	9606
LSALVEYDK	1	0	Unmodified	1036.5441	0.54407645	2542				yes	yes	0	0	0	4	1			1		1												12.131	12.131	2	0.0024426	4543	DP690-5	110.12	67.833	+		18.609	18.516	4.4583	2	0	Median	699370000	40238000	659130000	9360	2542	8819	18477;18478	45079;45080;45081;45082	45081		4	9606
LSANQQNILK	1	0	Unmodified	1127.6299	0.62987176	910	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	12.5	2.5										1					1		13.201	13.201	2	1.8771E-05	6274	DP690-15	221.33	143.4			0.85127	0.99417	0.86269	2	0	Median	227050000	111010000	116040000	9361	910	8820	18479;18480	45083;45084;45085;45086;45087;45088;45089	45087		7	9606
LSASLLHSHDTETR	0	1	Unmodified	1565.7798	0.77978347	2171	Q9HCU5	PREB	Prolactin regulatory element-binding protein	yes	yes	0	0	0	14	0														2			11.422	11.422	3;4	0.00018017	3952	DP690-14	113.07	92.286			0.84705	1.0346	1.2896	2	0	Median	38786000	22972000	15814000	9362	2171	8821	18481;18482	45090;45091;45092;45093;45094;45095;45096;45097	45092		8	9606
LSASSLTMESFAFLWAGGR	0	1	Oxidation (M)	2045.9881	0.98806169	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	0	11	0											1						23.653	23.653	2	6.3135E-05	21363	DP690-11	124.42	109.25			0.84327	1.0377	NaN	1	0	Median	13175000	6939100	6235500	9363	1078	8822	18483	45098;45099	45098	1687	2	9606
LSASSLTMESFAFLWAGGR	0	1	Unmodified	2029.9931	0.99314707	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	11	0											2						24.921	24.921	2	7.4658E-28	22848	DP690-11	211.38	157.37			NaN	NaN	NaN	0	0	Median	2728800	2728800	0	9364	1078	8822	18484;18485	45100;45101;45102	45100		3	9606
LSCFAQTVSPAEK	1	0	Unmodified	1436.697	0.69696505	1366	Q16658	FSCN1	Fascin	yes	yes	0	0	0	9.67	4.03				1								1	1				14.372	14.372	2	3.7786E-17	8069	DP690-12	199.33	130.49			0.94605	1.0623	6.609	2	0	Median	82559000	27683000	54876000	9365	1366	8823	18486;18487;18488	45103;45104;45105;45106;45107;45108;45109	45104		7	9606
LSDESLDSFLIELEK	1	0	Unmodified	1736.872	0.8720121	1456	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	11	0											1						23.817	23.817	2	2.5062E-05	21488	DP690-11	156.69	125.86			0.87623	1.0792	NaN	1	0	Median	11230000	6633200	4596500	9366	1456	8824	18489	45110;45111;45112	45110		3	9606
LSDFNDITNMLLLK	1	0	Oxidation (M)	1651.8491	0.84910859	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.75	0.829									2	1	1						22.114	22.114	2	6.9136E-06	16648	DP690-9	181.66	157.94			0.89201	1.1014	10.856	3	0	Plateau	190300000	103510000	86790000	9367	1046	8825	18490;18491;18492;18493	45113;45114;45115;45116;45117;45118;45119;45120;45121;45122;45123;45124	45121	1616	12	9606
LSDFNDITNMLLLK	1	0	Unmodified	1635.8542	0.85419397	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							23.589	23.589	2	1.3955E-06	18998	DP690-9	191.33	104.45			0.88634	1.0948	0.057079	2	0	Median	48085000	25956000	22129000	9368	1046	8825	18494;18495	45125;45126;45127;45128;45129;45130;45131	45130		7	9606
LSDGFNGADLR	0	1	Unmodified	1163.5571	0.55710075	983	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	6	0						1											15.321	15.321	2	0.016583	8553	DP690-6	73.841	17.407			1.3034	1.4954	NaN	1	0	Median	8341800	3300100	5041700	9369	983	8826	18496	45132;45133	45133		2	9606
LSDLDYMQFIR	0	1	Unmodified	1399.6806	0.6805867	1057	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	14	0														1			21.03	21.03	2	0.00029086	16915	DP690-14	150.36	69.907			NaN	NaN	NaN	0	0	Median	10426000	10426000	0	9370	1057	8827	18497	45134;45135	45134		2	9606
LSDLKHMRYR	1	2	Oxidation (M)	1333.6925	0.69248879	1547	Q7Z4H7	HAUS6	HAUS augmin-like complex subunit 6	yes	yes	0	1	2	14	0														1			18.415	18.415	2	0.013381	13482	DP690-14	71.342	29.055			0.68581	0.78178	NaN	1	0	Median	123900000	63389000	60507000	9371	1547	8828	18498	45136	45136	2223	1	9606
LSDLLAPISEQIK	1	0	Unmodified	1425.8079	0.80789571	1084	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	4	0				2													19.663	19.663	2	0.0039216	14277	DP690-4	124.1	81.36			NaN	NaN	NaN	0	0	Median	6772800	0	6772800	9372	1084	8829	18499;18500	45137;45138	45137		2	9606
LSDVDANTAIKHEEQSNEDIPIAEQSSK	2	0	Unmodified	3067.4582	0.45818115	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	1	10	0										1							15.415	15.415	4	2.7009E-05	10144	DP690-10	90.694	79.93			0.61709	0.72181	NaN	1	0	Median	187690000	112420000	75270000	9373	1167	8830	18501	45139;45140	45140		2	9606
LSEDPYGIFCLVLTPTR	0	1	Unmodified	1980.0026	0.002649122	2525	Q9Y6V7	DDX49	Probable ATP-dependent RNA helicase DDX49	yes	yes	0	0	0	13	0													2				24.145	24.145	2	0.00054381	20390	DP690-13	136.24	101.17			NaN	NaN	NaN	0	0	Median	1309100	583500	725600	9374	2525	8831	18502;18503	45141;45142;45143;45144	45142		4	9606
LSEDYGVLK	1	0	Unmodified	1022.5284	0.52842638	643	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	10	3.56							1	1							1		14.957	14.957	2	0.0009675	8042	DP690-8	126.28	73.875			0.85555	0.9325	9.3819	2	0	Median	317810000	205960000	111850000	9375	643	8832	18504;18505;18506	45145;45146;45147;45148;45149;45150;45151	45151		7	9606
LSEFIPAVFR	0	1	Unmodified	1177.6495	0.64954457	1155	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	11	0											1						20.504	20.504	2	0.0066362	17268	DP690-11	88.37	58.897			1.067	1.3153	NaN	1	0	Median	11897000	4995000	6902300	9376	1155	8833	18507	45152	45152		1	9606
LSEHTEDLPK	1	0	Unmodified	1167.5772	0.57716749	2110	Q9H3P2	NELFA	Negative elongation factor A	yes	yes	0	0	0	8	0								1									17.196	17.196	2	0.027069	10482	DP690-8	71.877	11.71			0.8456	0.94499	NaN	1	0	Median	14356000	7847500	6508300	9377	2110	8834	18508	45153	45153		1	9606
LSEIDVSSEGVK	1	0	Unmodified	1261.6402	0.64016167	1830	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	11	4							1								1		14.737	14.737	2	0.00016416	8469	DP690-15	137.46	88.036			0.91366	1.0279	14.046	2	0	Median	76285000	36078000	40207000	9378	1830	8835	18509;18510	45154;45155;45156;45157	45154		4	9606
LSELLPEEVEAEVK	1	0	Unmodified	1583.8294	0.82941901	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	12	0												1					19.441	19.441	2	4.457E-06	15082	DP690-12	180.66	125.09			0.95463	1.1414	NaN	1	0	Median	33970000	16106000	17864000	9379	2450	8836	18511	45158;45159;45160;45161	45158		4	9606
LSEPEEELLQQFK	1	0	Unmodified	1588.7985	0.79845323	2448	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	11.5	0.5											1	1					20.101	20.101	2	0.0043254	16728	DP690-11	86.189	86.189			0.56093	0.67911	14.482	2	0	Median	61097000	40563000	20534000	9380	2448	8837	18512;18513	45162;45163	45162		2	9606
LSEQELQFR	0	1	Unmodified	1148.5826	0.58258722	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	11	0											1						15.767	15.767	2	3.6018E-06	10503	DP690-11	163.67	64.672			NaN	NaN	NaN	0	0	Median	116350000	116350000	0	9381	1375	8838	18514	45164;45165	45164		2	9606
LSESQLSFR	0	1	Unmodified	1065.5455	0.54547343	1910	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	12	0												1					15.331	15.331	2	0.0033524	9508	DP690-12	131.03	56.776			NaN	NaN	NaN	0	0	Median	39252000	0	39252000	9382	1910	8839	18515	45166;45167	45166		2	9606
LSEVLQAVTDHDIPQQLVER	0	1	Unmodified	2289.1965	0.19647456	1804	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	7	4			1								1						19.231	19.231	3	0.0059682	15427	DP690-11	87.228	59.55			1.1434	1.2942	NaN	1	0	Median	26297000	5170100	21127000	9383	1804	8840	18516;18517	45168;45169	45168		1	9606
LSFAHPPSAEVEAIALATLHDR	0	1	Unmodified	2344.2175	0.21754435	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	3	0			1														20.293	20.293	4	0.050068	15493	DP690-3	49.497	34.016			0.64066	0.7333	NaN	1	0	Median	14589000	9424300	5164200	9384	134	8841	18518	45170	45170		0	9606
LSFAVPFR	0	1	Unmodified	935.52289	0.52288749	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	10	0.816									1	1	1						19.128	19.128	2	0.031325	15351	DP690-11	104.45	14.774			0.73813	0.84991	0.0047965	2	0	Median	370170000	212090000	158080000	9385	1046	8842	18519;18520;18521	45171;45172;45173	45172		1	9606
LSFDSSPTSSTDGHSSYGLDSGFCTISR	0	1	Unmodified	2967.2829	0.28285932	1074	Q00587	CDC42EP1	Cdc42 effector protein 1	yes	yes	0	0	0	13	0													1				18.245	18.245	3	6.55E-12	13131	DP690-13	144.83	136.65			0.69478	0.85632	NaN	1	0	Median	21664000	13147000	8516700	9386	1074	8843	18522	45174;45175;45176	45174		3	9606
LSFEDFVTMTASR	0	1	Oxidation (M)	1518.7024	0.70244436	2325	Q9UBV8	PEF1	Peflin	yes	yes	0	1	0	11	4							1								1		20.967	20.967	2	6.0139E-05	16156	DP690-15	139.31	108.51			0.83698	0.95422	7.5788	2	0	Median	57534000	31502000	26032000	9387	2325	8844	18523;18524	45177;45178;45179;45180;45181;45182	45178	2775	6	9606
LSFEDFVTMTASR	0	1	Unmodified	1502.7075	0.70752973	2325	Q9UBV8	PEF1	Peflin	yes	yes	0	0	0	7	0							1										22.525	22.525	2	0.00021714	17556	DP690-7	118.23	92.937			1.0497	1.198	NaN	1	0	Median	5107200	3175500	1931600	9388	2325	8844	18525	45183	45183		1	9606
LSFLYLITGNLEK	1	0	Unmodified	1509.8443	0.84428121	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	6.5	3.5			1							1							23.96	23.96	2	0.00016076	21828	DP690-10	147.28	130.11			1.0017	1.2141	NaN	1	0	Median	8340100	3008700	5331400	9389	878	8845	18526;18527	45184;45185;45186	45184		3	9606
LSFNPTQLEEQCHI	0	0	Unmodified	1714.7985	0.79847001	36	CON__P02754			yes	yes	0	0	0	7.5	0.5							1	1									19.214	19.214	2	1.0506E-25	13575	DP690-7	225.01	181.71		+	NaN	NaN	NaN	0	0	Median	0	0	0	9390	36	8846	18528;18529	45187;45188;45189	45188		3	
LSGAEPDDEEYQEFEEMLEHAESAQDFASR	0	1	Oxidation (M)	3474.4318	0.43176798	1860	Q96GC9	VMP1	Vacuole membrane protein 1	yes	yes	0	1	0	6	0						1											20.746	20.746	3	1.2732E-07	14880	DP690-6	126.86	126.86			0.92814	1.0625	NaN	1	0	Median	5875400	3496900	2378500	9391	1860	8847	18530	45190;45191;45192;45193;45194;45195;45196	45191	2422	7	9606
LSGEAFDINK	1	0	Unmodified	1092.5451	0.54513908	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0										1							15.094	15.094	2	0.04863	9495	DP690-10	64.711	20.334			0.78264	0.96665	NaN	1	0	Median	139610000	64114000	75501000	9392	1724	8848	18531	45197	45197		1	9606
LSGGHSLHETSTVLVETVTK	1	0	Unmodified	2094.0957	0.095697884	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	6.71	3.84		2	1						1	2	1						15.022	15.022	3;4	1.755E-12	7774	DP690-2	171.85	143.3			0.90349	1.0738	33.622	6	0	Median	683840000	376230000	307610000	9393	1270	8849	18532;18533;18534;18535;18536;18537;18538	45198;45199;45200;45201;45202;45203;45204;45205;45206;45207;45208;45209;45210;45211;45212;45213;45214	45208		17	9606
LSGKPQNAPEGYQNR	1	1	Unmodified	1657.8172	0.81723161	1163	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	0	1	9.5	3.5				1					1			1	1				10.349	10.349	3	5.6044E-07	2661	DP690-4	185.66	167.69			0.68077	0.803	13.61	4	0	Median	271680000	164640000	107040000	9394	1163	8850	18539;18540;18541;18542	45215;45216;45217;45218;45219;45220;45221;45222;45223;45224;45225;45226;45227	45222		13	9606
LSGLNAFDIAEELVK	1	0	Unmodified	1617.8614	0.86138784	346	O95983	MBD3	Methyl-CpG-binding domain protein 3	yes	yes	0	0	0	14	0														1			23.725	23.725	2	1.6772E-05	20235	DP690-14	135.1	121.37			0.85097	1.0026	NaN	1	0	Median	7221700	3782600	3439100	9395	346	8851	18543	45228;45229	45229		2	9606
LSGSGTHSHGNQSTTVPGSSSGPLQNHQHVDSSSGR	0	1	Unmodified	3583.6384	0.63843898	1467	Q6DCA0	AMMECR1L	AMMECR1-like protein	yes	yes	0	0	0	14	0														2			10.379	10.379	5;6	9.0674E-21	2626	DP690-14	154.4	154.4			0.82085	0.9897	3.4734	2	0	Median	129320000	69320000	59998000	9396	1467	8852	18544;18545	45230;45231;45232;45233;45234;45235	45233		6	9606
LSGSNPYTTVTPQIINSK	1	0	Unmodified	1919	6.5851E-06	186	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	11	0											1						17.017	17.017	2	2.111E-06	12389	DP690-11	137.09	137.09			0.68177	0.82998	NaN	1	0	Median	36369000	20855000	15514000	9397	186	8853	18546	45236;45237	45237		2	9606
LSHANSAVVLSAVK	1	0	Unmodified	1394.7882	0.78816332	1152;1013	Q10567;P63010	AP1B1;AP2B1	AP-1 complex subunit beta-1;AP-2 complex subunit beta	no	no	0	0	0	11	0											1						13.305	13.305	3	0.0079504	6856	DP690-11	55.414	1.8458			0.97366	1.1271	NaN	1	0	Median	152750000	80631000	72119000	9398	1152;1013	8854	18547	45238;45239	45238		2	9606
LSHETVTIELK	1	0	Unmodified	1268.6976	0.69761697	979	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	0	0	16	0																1	13.829	13.829	2	0.003495	7068	DP690-16	92.239	54.427			0.83687	0.98005	NaN	1	0	Median	7888700	4773100	3115600	9399	979	8855	18548	45240;45241	45241		2	9606
LSHPLLEQLLPALR	0	1	Unmodified	1598.9508	0.95081197	1587	Q86XI2	NCAPG2	Condensin-2 complex subunit G2	yes	yes	0	0	0	11	0											1						20.683	20.683	3	0.0011264	17540	DP690-11	69.716	69.716			0.81063	0.99961	NaN	1	0	Median	11659000	6270900	5388100	9400	1587	8856	18549	45242;45243	45242		2	9606
LSIFDANESGFESYEALPQHK	1	0	Unmodified	2381.1176	0.11755554	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							19.526	19.526	3	0.00058861	16045	DP690-10	80.733	54.336			0.84406	1.0412	NaN	1	0	Median	95712000	51269000	44442000	9401	591	8857	18550	45244;45245;45246	45244		3	9606
LSILYPATTGR	0	1	Unmodified	1190.6659	0.66592292	618	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	7	0							1										16.982	16.982	2	0.0054857	10762	DP690-7	87.258	54.938			0.92541	1.0322	NaN	1	0	Median	39539000	20836000	18703000	9402	618	8858	18551	45247	45247		1	9606
LSIPTYGLQCTR	0	1	Unmodified	1407.718	0.71803484	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															17.649	17.649	2	0.00015206	10855	DP690-2	148.91	111.2			0.84611	0.87937	NaN	1	0	Median	63955000	34110000	29846000	9403	789	8859	18552	45248;45249;45250;45251	45250		4	9606
LSIYNALKK	2	0	Unmodified	1048.6281	0.62808085	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								14.353	14.353	2	0.026571	7645	DP690-9	87.323	60.068			0.86996	1.0136	NaN	1	0	Median	35258000	20499000	14758000	9404	1319	8860	18553	45252;45253	45252		2	9606
LSKDPNIVIAK	2	0	Unmodified	1196.7129	0.71287311	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	1	4	0				1													12.242	12.242	3	0.01166	4926	DP690-4	69.451	43.559			5.0862	5.2677	NaN	1	0	Median	18755000	2923700	15832000	9405	623	8861	18554	45254	45254		1	9606
LSKVDEMISHATEELETYR	1	1	Oxidation (M)	2266.0787	0.078727191	1921	Q96RT6	CTAGE1	cTAGE family member 2	yes	yes	0	1	1	3	0			1														23.369	23.369	4	0.039585	19019	DP690-3	68.845	49.054			NaN	NaN	NaN	0	0	Median	4354000	4354000	0	9406	1921	8862	18555	45255	45255	2455	1	9606
LSLATFLLGASVLALPLLTR	0	1	Unmodified	2068.266	0.2659981	217	O60725	ICMT	Protein-S-isoprenylcysteine O-methyltransferase	yes	yes	0	0	0	9	0									1								30.094	30.094	2	0.0017271	24310	DP690-9	82.651	78.103			0.77042	0.84629	NaN	1	0	Median	422810	188380	234430	9407	217	8863	18556	45256	45256		1	9606
LSLDDLLQR	0	1	Unmodified	1071.5924	0.59242362	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2.5	0.5		1	1														20.734	20.734	2	0.00013109	16069	DP690-3	141.39	22.215			1.3023	1.392	5.0672	2	0	Median	31379000	13298000	18081000	9408	602	8864	18557;18558	45257;45258;45259;45260;45261;45262;45263;45264;45265	45264		9	9606
LSLDELTK	1	0	Unmodified	917.50696	0.50696266	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															17.251	17.251	2	0.050049	10363	DP690-2	113.41	31.107			0.9885	0.99767	NaN	1	0	Median	15515000	7385300	8129400	9409	2418	8865	18559	45266	45266		0	9606
LSLDGQNIYNACCTLR	0	1	Unmodified	1896.8822	0.88221641	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	12.5	0.5												1	1				18.043	18.043	2	5.1694E-24	13185	DP690-12	273.15	239.39			0.79001	0.86775	NaN	1	0	Median	340640000	214560000	126080000	9410	595	8866	18560;18561	45267;45268;45269;45270;45271	45268		5	9606
LSLDVEQAPSGQHSQAQLSGQQQR	0	1	Unmodified	2591.2688	0.26880466	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	10.3	0.943									1		2						14.283	14.283	3	1.6519E-10	8332	DP690-11	155.16	127.2			0.80867	0.99353	7.7298	2	0	Median	105570000	66717000	38849000	9411	83	8867	18562;18563;18564	45272;45273;45274;45275;45276;45277;45278;45279	45273		8	9606
LSLEGDHSTPPSAYGSVK	1	0	Unmodified	1843.8952	0.89520716	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	12.1	3.29						4		1	2	1	1		1	12	2	2	16.629	16.629	2;3	1.5812E-42	7505	DP690-14	305.69	270.02			0.72932	0.51892	15.888	22	0	Linear	34569000000	19643000000	14925000000	9412	404	8868	18565;18566;18567;18568;18569;18570;18571;18572;18573;18574;18575;18576;18577;18578;18579;18580;18581;18582;18583;18584;18585;18586;18587;18588;18589;18590	45280;45281;45282;45283;45284;45285;45286;45287;45288;45289;45290;45291;45292;45293;45294;45295;45296;45297;45298;45299;45300;45301;45302;45303;45304;45305;45306;45307;45308;45309;45310;45311;45312;45313;45314;45315;45316;45317;45318;45319;45320;45321;45322;45323;45324;45325;45326;45327;45328;45329;45330;45331;45332;45333;45334;45335;45336;45337;45338;45339;45340;45341;45342;45343;45344;45345;45346;45347;45348;45349;45350;45351;45352	45290		70	9606
LSLGTYASLHGR	0	1	Unmodified	1273.6779	0.67788459	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	11	0											1						14.804	14.804	3	4.9151E-05	9098	DP690-11	123.67	87			0.88542	0.96437	NaN	1	0	Median	388340000	201800000	186540000	9413	2340	8869	18591	45353;45354;45355;45356	45356		4	9606
LSLLEEYGCCK	1	0	Unmodified	1370.621	0.62102291	871	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	12	0												1					17.727	17.727	2	0.0020084	12837	DP690-12	97.965	52.985			0.75898	0.90756	NaN	1	0	Median	33852000	12940000	20912000	9414	871	8870	18592	45357	45357		1	9606
LSLLLNDISR	0	1	Unmodified	1142.6659	0.66592292	1342	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	5	0					1												19.279	19.279	2	0.0016612	13417	DP690-5	104.42	53.619			1.2046	1.2659	NaN	1	0	Median	20047000	8290900	11756000	9415	1342	8871	18593	45358;45359;45360;45361	45360		4	9606
LSLMPWFHGK	1	0	Oxidation (M)	1230.6219	0.62194961	719	P41240;P42679	CSK;MATK	Tyrosine-protein kinase CSK;Megakaryocyte-associated tyrosine-protein kinase	yes	no	0	1	0	5	0					1												16.975	16.975	3	0.025606	10464	DP690-5	60.398	41.791			0.73626	0.73653	NaN	1	0	Median	17270000	9922600	7347400	9416	719	8872	18594	45362;45363	45362	1050	2	9606
LSLPQNETVADTTLTK	1	0	Unmodified	1729.9098	0.90979459	2165	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	10	0.816									1	1	1						16.775	16.775	2	0.00018318	12085	DP690-11	117.95	94.272			0.78361	0.97125	19.12	2	0	Median	60632000	43908000	16724000	9417	2165	8873	18595;18596;18597	45364;45365;45366;45367;45368;45369;45370;45371;45372	45368		9	9606
LSLQGHPTDLQTSNVKNEEK	2	0	Unmodified	2237.1288	0.12878893	2299	Q9P270	SLAIN2	SLAIN motif-containing protein 2	yes	yes	0	0	1	11.5	0.5											1	1					12.701	12.701	4	0.002371	5766	DP690-12	55.209	33.307			0.64356	0.74473	2.9145	2	0	Median	121560000	65355000	56209000	9418	2299	8874	18598;18599	45373;45374	45374		2	9606
LSLSNAISTALPLTQLR	0	1	Unmodified	1797.036	0.035998161	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	7	3.56		1							1	1							22.661	22.661	2	8.6361E-05	16327	DP690-2	122.46	93.156			0.93297	1.0538	1.4443	2	0	Median	24027000	15018000	9008900	9419	1264	8875	18600;18601;18602	45375;45376;45377;45378;45379;45380;45381;45382	45379		8	9606
LSLTEFSLPK	1	0	Unmodified	1133.6332	0.6332258	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	10	0										1							19.739	19.739	2	0.0085223	16408	DP690-10	85.731	64.784			0.98212	1.2141	NaN	1	0	Median	60680000	25889000	34791000	9420	550	8876	18603	45383	45383		1	9606
LSLVTGQSGQGK	1	0	Unmodified	1173.6354	0.63535107	1965	Q99973	TEP1	Telomerase protein component 1	yes	yes	0	0	0	2	0		1															13.005	13.005	2	0.0021351	5410	DP690-2	93.442	46.985			0.88727	0.88102	NaN	1	0	Median	3293500	2031100	1262400	9421	1965	8877	18604	45384	45384		1	9606
LSMAEINSGR	0	1	Oxidation (M)	1092.5234	0.52335778	2571				yes	yes	0	1	0	12	0												1					11.501	11.501	2	0.040337	4352	DP690-12	72.789	18.067	+		0.89962	1.059	NaN	1	0	Median	86084000	44233000	41851000	9422	2571	8878	18605	45385	45385	2987	1	9606
LSNHISSLFR	0	1	Unmodified	1172.6302	0.63020611	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	5	1				2		2											15.051	15.051	2;3	5.705E-05	8527	DP690-4	131.12	110.83			0.95147	1.0535	3.887	2	0	Median	85665000	43793000	41872000	9423	469	8879	18606;18607;18608;18609	45386;45387;45388;45389;45390;45391;45392;45393	45388		8	9606
LSNIFVIGK	1	0	Unmodified	989.59097	0.59096706	986	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	11	4							1								1		18.125	18.125	2	0.00083399	12729	DP690-15	130.22	97.866			1.0694	1.1467	19.732	2	0	Median	423860000	212710000	211150000	9424	986	8880	18610;18611	45394;45395;45396;45397;45398;45399	45396		6	9606
LSNKVEAIDVEEAKR	2	1	Unmodified	1699.9105	0.9104633	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	2	11	0											1						12.35	12.35	4	0.026853	5500	DP690-11	119.77	77.253			NaN	NaN	NaN	0	0	Median	64356000	0	64356000	9425	651	8881	18612	45400	45400		1	9606
LSNRPAFMPSEGR	0	2	Unmodified	1460.7194	0.71943182	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	1	11	0											1						13.253	13.253	3	0.0034447	6819	DP690-11	75.483	55.205			0.6995	0.86228	NaN	1	0	Median	119220000	65188000	54031000	9426	476	8882	18613	45401;45402	45402		2	9606
LSNRPAFMPSEGR	0	2	Oxidation (M)	1476.7143	0.71434645	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	1	1	3	0			1														11.214	11.214	3	0.025185	3700	DP690-3	56.414	35.984			1.4356	1.4851	NaN	1	0	Median	21505000	7915400	13590000	9427	476	8882	18614	45403;45404;45405	45405	582	3	9606
LSNTQGVVSAFSTMMSVHR	0	1	2 Oxidation (M)	2082.9827	0.98265874	773	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	2	0	15.3	0.471															2	1	15.05	15.05	2;3	5.6058E-06	8887	DP690-15	128.85	115.71			0.85887	0.94134	21.076	3	0	Median	146010000	83987000	62024000	9428	773	8883	18615;18616;18617	45406;45407;45408;45409;45410;45411;45412;45413;45414;45415;45416	45411	1150;1151	11	9606
LSNVAPPCILR	0	1	Unmodified	1238.6805	0.68052712	2420	Q9UPY8	MAPRE3	Microtubule-associated protein RP/EB family member 3	yes	yes	0	0	0	15	0															1		16.33	16.33	2	0.036849	10608	DP690-15	66.692	28.964			0.73504	0.84934	NaN	1	0	Median	11587000	6303100	5283700	9429	2420	8884	18618	45417	45417		1	9606
LSPDAIPGK	1	0	Unmodified	896.49673	0.49673232	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	3	0			1														12.869	12.869	2	0.073575	5832	DP690-3	60.118	60.118			0.99049	1.0567	NaN	1	0	Median	25817000	12007000	13810000	9430	789	8885	18619	45418	45418		1	9606
LSPEELLLR	0	1	Unmodified	1068.6179	0.61791009	484	P13797;Q14651;P13796	PLS3;PLS1;LCP1	Plastin-3;Plastin-1;Plastin-2	yes	no	0	0	0	9.33	3.77				1								2					19.525	19.525	2	0.00057168	14104	DP690-4	147.52	90.238			0.80804	0.93824	NaN	1	0	Median	16038000	8336800	7701500	9431	484	8886	18620;18621;18622	45419;45420;45421;45422;45423;45424	45421		6	9606
LSPESAPGPAR	0	1	Unmodified	1080.5564	0.55637247	1584	Q86X51	CXorf67	Uncharacterized protein CXorf67	yes	yes	0	0	0	8	4				1								1					11.034	11.034	2	0.0068472	3533	DP690-12	84.615	40.22			0.69139	0.81217	26.119	2	0	Median	65798000	43112000	22686000	9432	1584	8887	18623;18624	45425;45426;45427;45428;45429;45430	45425		6	9606
LSPFMADIR	0	1	Oxidation (M)	1064.5325	0.5324659	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	10	0										1							16.232	16.232	2	0.034729	11240	DP690-10	78.516	39.263			0.77785	0.8	NaN	1	0	Median	1493099999.9999998	821900000	671230000	9433	549	8888	18625	45431;45432	45431	709	2	9606
LSPFMADIR	0	1	Unmodified	1048.5376	0.53755128	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.5	0.5									1	1							17.88	17.88	2	0.00082023	13583	DP690-10	131.22	56.033			0.75593	0.86654	12.454	2	0	Median	1113300000	634100000	479230000	9434	549	8888	18626;18627	45433;45434;45435;45436;45437;45438;45439	45436		7	9606
LSPGESAYQK	1	0	Unmodified	1078.5295	0.52948901	1480	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	11	0											1						10.815	10.815	2	0.05685	3319	DP690-11	85.862	45.084			NaN	NaN	NaN	0	0	Median	46455000	46455000	0	9435	1480	8889	18628	45440	45440		1	9606
LSPGGYFIGTTPNSFELIR	0	1	Unmodified	2068.0629	0.062941193	162	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	12	0												1					21.524	21.524	2	2.5701E-11	17786	DP690-12	168	129.04			0.81902	0.99965	NaN	1	0	Median	6786100	3479700	3306400	9436	162	8890	18629	45441;45442;45443;45444	45441		4	9606
LSPPSSSAASSYSFSDLNSTR	0	1	Unmodified	2159.9971	0.99710605	817	P50402	EMD	Emerin	yes	yes	0	0	0	14	0														2			17.263	17.263	2	0.0022213	12007	DP690-14	123.76	91.142			NaN	NaN	NaN	0	0	Median	0	0	0	9437	817	8891	18630;18631	45445;45446	45445		2	9606
LSPPYSSPQEFAQDVGR	0	1	Unmodified	1876.8955	0.89554151	1194	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	11	0											2						18.209	18.209	2	0.036286	13971	DP690-11	94.717	53.028			NaN	NaN	NaN	0	0	Median	0	0	0	9438	1194	8892	18632;18633	45447;45448	45447		2	9606
LSPWIRPDSK	1	1	Unmodified	1197.6506	0.6506072	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	1	4	0				2													13.799	13.799	2;3	0.0037436	7011	DP690-4	80.706	56.635			2.6917	3.07	183.63	2	0	Median	29476000	6724800	22751000	9439	111	8893	18634;18635	45449;45450;45451	45450		3	9606
LSQEEVVLADLSALEAHWSTLR	0	1	Unmodified	2466.2755	0.27545316	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								24.594	24.594	3	0.00028319	20103	DP690-9	95.227	82.329			0.75396	0.90091	NaN	1	0	Median	1512300	813440	698880	9440	2411	8894	18636	45452;45453;45454;45455;45456	45455		5	9606
LSQEQVDNFTLDINTAYAR	0	1	Unmodified	2197.0651	0.065126037	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	11	0											1						20.159	20.159	2	1.6846999999999998E-50	16829	DP690-11	328.14	261.02			0.64788	0.77307	NaN	1	0	Median	44604000	25540000	19065000	9441	1375	8895	18637	45457;45458;45459	45458		3	9606
LSQLEGVNVER	0	1	Unmodified	1242.6568	0.65681479	1916	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	11	0											2						14.561	14.561	2	0.00030485	8725	DP690-11	178.84	100.69			NaN	NaN	NaN	0	0	Median	0	0	0	9442	1916	8896	18638;18639	45460;45461	45460		2	9606
LSQSGHMLLNLSR	0	1	Oxidation (M)	1470.7613	0.76129664	808;16;446	P49792;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	1	0	9	0									1								13.75	13.75	3	0.014578	6833	DP690-9	64.374	45.513			0.50717	0.61994	NaN	1	0	Median	26275000	16114000	10161000	9443	808;16;446	8897	18640	45462;45463	45462	21	2	9606
LSQVSDSVSGQTVVDPK	1	0	Unmodified	1744.8843	0.88430813	298	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	11	0											1						14.427	14.427	2	0.055496	8544	DP690-11	89.507	42.219			NaN	NaN	NaN	0	0	Median	0	0	0	9444	298	8898	18641	45464	45464		1	9606
LSQYLDSSQVKPLFQFFVPDALNDR	1	1	Unmodified	2926.4865	0.48650857	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	10	0										1							23.116	23.116	3	0.059313	20825	DP690-10	58.802	33.589			NaN	NaN	NaN	0	0	Median	6577600	0	6577600	9445	1782	8899	18642	45465	45465		1	9606
LSQYLDSSQVKPLFQFFVPDALNDRHPDVR	1	2	Unmodified	3530.7947	0.79465226	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	2	10	0										1							20.874	20.874	5	0.015984	17922	DP690-10	39.737	21.296			1.1634	1.3454	NaN	1	0	Median	66268000	36991000	29277000	9446	1782	8900	18643	45466;45467	45466		2	9606
LSSCDMCELAR	0	1	Oxidation (M)	1356.5472	0.54720604	1083	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	1	0	3	0			1														12.117	12.117	2	0.058085	4865	DP690-3	67.334	19.731			0.80696	0.8978	NaN	1	0	Median	5972700	2740100	3232600	9447	1083	8901	18644	45468	45468		1	9606
LSSCDSFTSTINELNHCLSLR	0	1	Unmodified	2453.1315	0.13150782	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	10	0										1							21.047	21.047	3	0.010453	18149	DP690-10	81.357	61.635			NaN	NaN	NaN	0	0	Median	0	0	0	9448	408	8902	18645	45469	45469		1	9606
LSSEMHLLNPVK	1	0	Oxidation (M)	1382.7228	0.72278587	2549				yes	yes	0	1	0	4	0				1													20.371	20.371	2	0.024064	15167	DP690-4	91.265	43.306	+		NaN	NaN	NaN	0	0	Median	1857700	1857700	0	9449	2549	8903	18646	45470	45470	2977	1	9606
LSSEMNTSTVNSAR	0	1	Unmodified	1495.6937	0.69367058	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					12.388	12.388	2	3.4294E-16	5312	DP690-12	269.33	205.91			0.78964	0.91059	NaN	1	0	Median	129600000	70410000	59189000	9450	544	8904	18647	45471;45472;45473;45474;45475	45473		5	9606
LSSEMNTSTVNSAR	0	1	Oxidation (M)	1511.6886	0.68858521	544	P20700	LMNB1	Lamin-B1	yes	yes	0	1	0	12.6	1.4												6				1	14.191	14.191	2	7.4563E-05	2770	DP690-12	181.4	118.33			0.73342	0.83817	16.153	2	0	Median	139260000	80182000	59075000	9451	544	8904	18648;18649;18650;18651;18652;18653;18654	45476;45477;45478;45479;45480;45481;45482;45483	45478	696	8	9606
LSSEQFHEAASK	1	0	Unmodified	1332.631	0.63099397	1986	Q9BRQ6	CHCHD6	MICOS complex subunit MIC25	yes	yes	0	0	0	15	0															1		10.865	10.865	3	0.038075	3385	DP690-15	115.57	83.422			0.91098	1.0756	NaN	1	0	Median	29219000	17450000	11769000	9452	1986	8905	18655	45484	45484		0	9606
LSSFATSVAEDQSVASLTAPQTEETGK	1	0	Unmodified	2753.3243	0.32431343	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								18.901	18.901	2	7.091E-05	13494	DP690-9	124.99	90.606			NaN	NaN	NaN	0	0	Median	0	0	0	9453	1048	8906	18656	45485	45485		1	9606
LSSLIILMPHHVEPLER	0	1	Oxidation (M)	1999.0925	0.092467182	819	P50454	SERPINH1	Serpin H1	yes	yes	0	1	0	9	4					3								3				16.981	16.981	3;4	5.1366E-07	10753	DP690-13	139.58	139.58			0.77584	0.81664	22.775	5	0	Median	583720000	313700000	270010000	9454	819	8907	18657;18658;18659;18660;18661;18662	45486;45487;45488;45489;45490;45491;45492;45493;45494;45495;45496	45487	1229	11	9606
LSSLIILMPHHVEPLER	0	1	Unmodified	1983.0976	0.09755256	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	9	4					1								1				17.965	17.965	3;4	4.4156E-08	11696	DP690-5	164.7	146.5			0.7447	0.83842	8.1605	2	0	Median	140140000	78594000	61544000	9455	819	8907	18663;18664	45497;45498;45499;45500;45501	45499		4	9606
LSSLNLDDHAK	1	0	Unmodified	1211.6146	0.61461563	1052	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	14	0														1			12.564	12.564	3	0.0035694	5566	DP690-14	77.593	48.829			0.64675	0.78623	NaN	1	0	Median	50614000	26023000	24591000	9456	1052	8908	18665	45502;45503;45504;45505;45506	45504		5	9606
LSSLSSQTEPTSAGDQYDCSR	0	1	Unmodified	2287.9863	0.98628337	2046	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	10	0										1							14.133	14.133	2	3.2176E-27	8243	DP690-10	229.23	192.66			NaN	NaN	NaN	0	0	Median	0	0	0	9457	2046	8909	18666	45507	45507		1	9606
LSSNALVFR	0	1	Unmodified	1005.5607	0.56072956	2224	Q9NUQ7	UFSP2	Ufm1-specific protease 2	yes	yes	0	0	0	13	0													1				15.927	15.927	2	0.010107	10069	DP690-13	113.41	63.822			NaN	NaN	NaN	0	0	Median	47562000	47562000	0	9458	2224	8910	18667	45508;45509	45509		2	9606
LSSPATLNSR	0	1	Unmodified	1044.5564	0.55637247	28	CON__P00761			yes	yes	0	0	0	9.23	4.26		2				1	1	2	1	1	1	1		1	1	1	12.116	12.116	2	9.0135E-11	4771	DP690-8	190.26	86.053		+	0.035541	0.039933	NaN	1	0	Median	2684700000	2674500000	10207000	9459	28	8911	18668;18669;18670;18671;18672;18673;18674;18675;18676;18677;18678;18679;18680	45510;45511;45512;45513;45514;45515;45516;45517;45518;45519;45520;45521;45522;45523;45524;45525;45526;45527;45528;45529;45530;45531;45532;45533;45534;45535;45536	45533		27	
LSSQPVVVESSHPYTDDTSTSGTVK	1	0	Unmodified	2620.2504	0.2504202	337	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	9	0									1								13.958	13.958	3	0.00012048	7113	DP690-9	95.742	68.421			NaN	NaN	NaN	0	0	Median	0	0	0	9460	337	8912	18681	45537	45537		1	9606
LSSSMYSSQGSSGSSQSK	1	0	Unmodified	1793.7738	0.7737714	1343	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	0	0	0	10	0										1							11.374	11.374	2	0.0074076	4230	DP690-10	124.51	106.71			NaN	NaN	NaN	0	0	Median	0	0	0	9461	1343	8913	18682	45538	45538		1	9606
LSSSPPSGSGGGGGASSSSHCSGESQCR	0	1	Unmodified	2623.0623	0.062318634	2491	Q9Y4X0	AMMECR1	AMME syndrome candidate gene 1 protein	yes	yes	0	0	0	14	0														1			10.198	10.198	3	3.1091E-06	2404	DP690-14	121.5	119.98			1.0369	1.2951	NaN	1	0	Median	6872900	3578300	3294600	9462	2491	8914	18683	45539;45540	45539		2	9606
LSTDHIPILYR	0	1	Unmodified	1326.7296	0.7295858	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	4	0				1													16.425	16.425	3	0.01257	10459	DP690-4	63.624	39.348			0.77348	0.89349	NaN	1	0	Median	17804000	11878000	5926300	9463	1122	8915	18684	45541	45541		1	9606
LSTIALALGVER	0	1	Unmodified	1241.7343	0.73433683	624	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	no	0	0	0	4	0				1													19.334	19.334	2	0.0047907	13940	DP690-4	86.189	86.189			1.8084	2.0867	NaN	1	0	Median	18192000	6477900	11714000	9464	624	8916	18685	45542;45543	45543		2	9606
LSTQEGLVQELQK	1	0	Unmodified	1471.7882	0.7882229	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11	0											1						16.634	16.634	2	2.5208E-05	11770	DP690-11	178.46	146.7			0.88677	1.0678	NaN	1	0	Median	91570000	44548000	47022000	9465	2024	8917	18686	45544;45545;45546;45547	45544		4	9606
LSTQSNSNNIEPAR	0	1	Unmodified	1529.7434	0.74339797	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	7.8	2.93		1							3	1							11.258	11.258	2	1.6598E-09	4046	DP690-10	208.33	177.77			0.80589	0.91115	0.39201	2	0	Median	40339000	21619000	18720000	9466	1282	8918	18687;18688;18689;18690;18691	45548;45549;45550;45551;45552;45553;45554;45555;45556;45557;45558;45559;45560	45550		13	9606
LSTSGNRPPANAETFSCNK	1	1	Unmodified	2049.9538	0.95380145	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							12.03	12.03	3	3.1836E-05	5145	DP690-10	120.9	96.847			0.60521	0.71208	NaN	1	0	Median	209240000	130640000	78605000	9467	13	8919	18692	45561;45562;45563;45564;45565;45566	45562		6	9606
LSTSSYSQVR	0	1	Unmodified	1126.5619	0.56185177	1302	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	2	0		1															12.309	12.309	2	0.044464	4511	DP690-2	88.177	24.643			NaN	NaN	NaN	0	0	Median	2529400	0	2529400	9468	1302	8920	18693	45567	45567		1	9606
LSVAAQEAAR	0	1	Unmodified	1014.5458	0.54580778	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.33	0.471									2	1							11.32	11.32	2	9.177E-17	3652	DP690-9	209.19	118.83			0.91865	1.0569	7.4865	2	0	Median	413680000	237510000	176170000	9469	1319	8921	18694;18695;18696	45568;45569;45570;45571;45572;45573;45574;45575;45576;45577;45578	45578		11	9606
LSVACFYGGTPYGGQFER	0	1	Unmodified	2007.9149	0.91489675	2195	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	11	0											1						19.305	19.305	2	0.00058522	15650	DP690-11	99.161	86.369			0.86492	1.0312	NaN	1	0	Median	41743000	17284000	24459000	9470	2195	8922	18697	45579;45580;45581;45582	45579		4	9606
LSVADSQAEAK	1	0	Unmodified	1117.5615	0.56151742	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	6	4		1								1							11.374	11.374	2	0.026899	4259	DP690-10	94.309	41.523			1.4014	1.3874	NaN	1	0	Median	62934000	61315000	1618400	9471	1782	8923	18698;18699	45583;45584;45585;45586	45584		4	9606
LSVEESEAAGDGVDTK	1	0	Unmodified	1605.737	0.73697519	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	3	0			1														13.898	13.898	2	5.1333E-07	7152	DP690-3	196.02	170.64			0.84337	0.90287	NaN	1	0	Median	22551000	12671000	9879600	9472	788	8924	18700	45587;45588;45589;45590;45591;45592	45590		6	9606
LSVLDLVVALAPCADEAAISK	1	0	Unmodified	2154.1606	0.16060633	1420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	10	0										1							26.759	26.759	2	8.8507E-05	25068	DP690-10	122.12	95.991			NaN	NaN	NaN	0	0	Median	1069000	1069000	0	9473	1420	8925	18701	45593;45594;45595	45594		3	9606
LSVNSVTAGDYSR	0	1	Unmodified	1367.6681	0.66810776	1340	Q15631	TSN	Translin	yes	yes	0	0	0	15	0															3		15.025	15.025	2	8.7154E-07	8789	DP690-15	161.19	92.819			NaN	NaN	NaN	0	0	Median	22923000	22923000	0	9474	1340	8926	18702;18703;18704	45596;45597;45598	45596		3	9606
LSVVEYDPGTHDLK	1	0	Unmodified	1571.7831	0.78313752	1153	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	10	0										1							15.216	15.216	3	0.056344	9849	DP690-10	64.374	38.012			NaN	NaN	NaN	0	0	Median	44690000	0	44690000	9475	1153	8927	18705	45599	45599		1	9606
LSVYAALQR	0	1	Unmodified	1019.5764	0.57637963	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							16.482	16.482	2	0.003865	10357	DP690-9	104.37	47.819			1.9903	2.2825	53.588	2	0	Median	393400000	188730000	204670000	9476	1319	8928	18706;18707	45600;45601;45602;45603	45602		4	9606
LSWHLWEVLR	0	1	Unmodified	1337.7244	0.72444085	867	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	11	0											1						20.238	20.238	3	0.072565	16944	DP690-11	57.836	3.5768			NaN	NaN	NaN	0	0	Median	7423000	7423000	0	9477	867	8929	18708	45604	45604		1	9606
LTACQVATAFNLSR	0	1	Unmodified	1550.7875	0.78751139	335	O95671	ASMTL	N-acetylserotonin O-methyltransferase-like protein	yes	yes	0	0	0	4	0				1													19.523	19.523	2	2.8143E-05	14204	DP690-4	126.66	96.046			1.0901	1.2619	NaN	1	0	Median	4781300	2309600	2471700	9478	335	8930	18709	45605;45606	45606		2	9606
LTADMISHPLGDFR	0	1	Unmodified	1571.7766	0.77661235	1074	Q00587	CDC42EP1	Cdc42 effector protein 1	yes	yes	0	0	0	13	0													1				17.898	17.898	3	0.056752	12657	DP690-13	44.807	22.257			0.33844	0.41223	NaN	1	0	Median	43896000	29571000	14325000	9479	1074	8931	18710	45607	45607		1	9606
LTADPDSEIATTSLR	0	1	Unmodified	1588.7944	0.79443049	279	O75928;O75925	PIAS2;PIAS1	E3 SUMO-protein ligase PIAS2;E3 SUMO-protein ligase PIAS1	yes	no	0	0	0	11.7	0.471											1	2					16.191	16.191	2	2.3782E-09	10661	DP690-12	199.8	138.24			NaN	NaN	NaN	0	0	Median	8026100	0	8026100	9480	279	8932	18711;18712;18713	45608;45609;45610	45609		3	9606
LTAEDLFEAR	0	1	Unmodified	1163.5823	0.58225287	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	7	3.56		1							1	1							18.948	18.948	2	5.3247E-05	15235	DP690-10	190.73	89.128			0.86695	0.99956	5.9066	3	0	Plateau	533860000	278430000	255430000	9481	1319	8933	18714;18715;18716	45611;45612;45613;45614;45615;45616;45617;45618;45619;45620;45621;45622;45623	45611		13	9606
LTAEFEEAQTSACR	0	1	Unmodified	1611.7199	0.71988533	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	11	0											2						14.497	14.497	2	0.0032811	8706	DP690-11	143	102			NaN	NaN	NaN	0	0	Median	0	0	0	9482	2303	8934	18717;18718	45624;45625	45625		2	9606
LTAELIEQAAQYTNAVR	0	1	Unmodified	1889.9847	0.98469087	438	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	9.67	3.77							2								1		20.732	20.732	2	6.7184E-42	15453	DP690-7	333.77	292.08			0.86848	0.97901	11.989	2	0	Median	65897000	34056000	31842000	9483	438	8935	18719;18720;18721	45626;45627;45628;45629;45630;45631;45632;45633;45634;45635	45633		10	9606
LTAIDILTTCAADIQR	0	1	Unmodified	1773.9295	0.92948418	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										2							22.38	22.38	2	0.0012982	19829	DP690-10	145.6	76.816			NaN	NaN	NaN	0	0	Median	9331000	9331000	0	9484	269	8936	18722;18723	45636;45637	45637		2	9606
LTALDYHNPAGFNCKDETEFR	1	1	Unmodified	2497.1332	0.13322238	2426	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	1	15	0															1		15.941	15.941	4	0.00097747	10074	DP690-15	73.688	53.791			0.65132	0.75354	NaN	1	0	Median	26870000	16609000	10261000	9485	2426	8937	18724	45638;45639	45639		2	9606
LTAVCMECFR	0	1	Oxidation (M)	1301.5566	0.55664852	367	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	1	0	15	0															1		14.112	14.112	2	0.01644	7578	DP690-15	83.783	45.507			1.011	1.1745	NaN	1	0	Median	22699000	10821000	11878000	9486	367	8938	18725	45640	45640	381	1	9606
LTCEEEEEKIFGR	1	1	Unmodified	1638.7559	0.75593649	834	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	1	10	0										1							16.064	16.064	3	0.011084	11145	DP690-10	91.202	49.377			NaN	NaN	NaN	0	0	Median	44019000	44019000	0	9487	834	8939	18726	45641	45641		1	9606
LTCFSVYCK	1	0	Unmodified	1176.5308	0.53075134	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							15.397	15.397	2	0.043741	10142	DP690-10	69.423	43.864			0.8267	1.0208	NaN	1	0	Median	82209000	45696000	36512000	9488	591	8940	18727	45642;45643	45642		2	9606
LTDCVVMRDPASK	1	1	Oxidation (M)	1506.717	0.71704856	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	1	14	0														1			11.04	11.04	3	0.0081739	3415	DP690-14	69.846	41.04			0.78064	0.91871	NaN	1	0	Median	101470000	57214000	44259000	9489	563	8941	18728	45644;45645;45646	45644	737	3	9606
LTDCVVMRDPASKR	1	2	Oxidation (M)	1662.8182	0.81815959	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	2	14	0														1			10.382	10.382	4	0.041419	2665	DP690-14	50.46	50.46			0.84724	0.95839	NaN	1	0	Median	177570000	94777000	82792000	9490	563	8942	18729	45647	45647	737	1	9606
LTDEDFSPFGSGGGLFSGGK	1	0	Unmodified	1973.9007	0.90068647	1454	Q9Y4E1;Q641Q2	FAM21C;FAM21A	WASH complex subunit FAM21C;WASH complex subunit FAM21A	yes	no	0	0	0	10	0										1							21.327	21.327	2	0.00019257	18622	DP690-10	109.07	80.31			0.93375	1.135	NaN	1	0	Median	17855000	9911400	7943300	9491	1454	8943	18730	45648	45648		1	9606
LTDQLPLIIVCDR	0	1	Unmodified	1554.844	0.84396364	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	10	0										1							20.566	20.566	2	0.039765	17525	DP690-10	88.155	17.47			NaN	NaN	NaN	0	0	Median	17950000	17950000	0	9492	1075	8944	18731	45649	45649		1	9606
LTDRDIIVLQR	0	2	Unmodified	1340.7776	0.77759863	2454	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	1	14	0														1			15.461	15.461	3	0.031183	9539	DP690-14	56.551	19.704			0.90936	1.0687	NaN	1	0	Median	31270000	13742000	17528000	9493	2454	8945	18732	45650	45650		1	9606
LTEADYLSSHLTEGPHR	0	1	Unmodified	1924.9279	0.92790427	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	0	13.6	3.32							1								3	1	15.182	15.182	2;3;4	6.646500000000001E-25	9046	DP690-15	249.98	216.98			0.80175	0.8566	2.873	3	0	Median	1102500000	615730000	486730000	9494	1983	8946	18733;18734;18735;18736;18737	45651;45652;45653;45654;45655;45656;45657;45658;45659;45660;45661;45662;45663;45664	45659		14	9606
LTEFEEAIGVIFTHVR	0	1	Unmodified	1859.9781	0.97814893	2203	Q9NRR4	DROSHA	Ribonuclease 3	yes	yes	0	0	0	10	0										1							23.727	23.727	3	0.0002895	21610	DP690-10	97.767	75.376			0.78657	0.98335	NaN	1	0	Median	8358500	4639000	3719500	9495	2203	8947	18738	45665;45666;45667;45668;45669;45670	45666		6	9606
LTEFTCYSFR	0	1	Unmodified	1322.5965	0.59652272	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	10	0										1							17.586	17.586	2	0.00011641	13265	DP690-10	141.2	120.2			0.93369	1.1552	NaN	1	0	Median	110500000	54528000	55971000	9496	1399	8948	18739	45671	45671		1	9606
LTEGCSFR	0	1	Unmodified	968.43857	0.43856552	729;1522	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	no	no	0	0	0	12	4								1								1	11.726	11.726	2	0.04751	4342	DP690-16	133.12	84.361			0.94356	0.98308	9.1389	2	0	Median	1097400000	570120000	527320000	9497	729;1522	8949	18740;18741	45672;45673	45672		0	9606
LTEHNETILFK	1	0	Unmodified	1343.7085	0.70851601	323	O95425	SVIL	Supervillin	yes	yes	0	0	0	10	0										1							14.218	14.218	3	0.013535	8389	DP690-10	65.695	36.624			0.91315	1.1272	NaN	1	0	Median	117200000	66454000	50747000	9498	323	8950	18742	45674;45675	45674		2	9606
LTELLEENPDTPEAPR	0	1	Unmodified	1822.8949	0.89487281	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9	0									1								16.801	16.801	2	0.0059971	10870	DP690-9	130.07	84.178			NaN	NaN	NaN	0	0	Median	0	0	0	9499	1102	8951	18743	45676	45676		1	9606
LTEMETLQSQLMAEK	1	0	2 Oxidation (M)	1782.838	0.83795156	668	P35579	MYH9	Myosin-9	yes	yes	0	2	0	2	0		1															15.754	15.754	2	1.3881E-14	8482	DP690-2	225.15	174.7			1.2141	1.2262	NaN	1	0	Median	17426000	8024600	9401800	9500	668	8952	18744	45677;45678;45679;45680	45679	957;958	4	9606
LTEMETLQSQLMAEK	1	0	Oxidation (M)	1766.843	0.84303694	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		2															17.652	17.652	2	1.468E-09	11465	DP690-2	204.32	182.93			1.0421	1.045	17.224	2	0	Median	10916000	5216100	5700000	9501	668	8952	18745;18746	45681;45682;45683;45684;45685;45686;45687;45688	45686	957;958	8	9606
LTEQAVQAINK	1	0	Unmodified	1213.6667	0.6666512	1981	Q9BRF8	CPPED1	Serine/threonine-protein phosphatase CPPED1	yes	yes	0	0	0	6	0						1											13.178	13.178	2	0.0017304	5902	DP690-6	136.27	47.449			NaN	NaN	NaN	0	0	Median	15367000	15367000	0	9502	1981	8953	18747	45689;45690	45690		2	9606
LTESLNIFETIVNNR	0	1	Unmodified	1761.9261	0.92611336	1273	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	14	0														1			22.387	22.387	2	6.093E-17	18572	DP690-14	274.53	230.85			0.66238	0.81966	NaN	1	0	Median	10672000	5403800	5267700	9503	1273	8954	18748	45691;45692	45691		2	9606
LTFDTTFSPNTGK	1	0	Unmodified	1427.6933	0.69325988	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	15	0.816														1	1	1	17.373	17.373	2	1.19E-34	12143	DP690-14	239.93	150.24			NaN	NaN	NaN	0	0	Median	233250000	0	233250000	9504	744	8955	18749;18750;18751	45693;45694;45695;45696	45694		4	9606
LTFDTTFSPNTGKK	2	0	Unmodified	1555.7882	0.7882229	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	1	14.3	0.471														2	1		15.294	15.294	2;3	1.9508E-05	9200	DP690-14	124.47	101.98			0.80095	0.89359	1.2983	2	0	Median	752030000	408180000	343850000	9505	744	8956	18752;18753;18754	45697;45698;45699;45700;45701;45702;45703;45704;45705	45698		9	9606
LTFIPGFIGSLK	1	0	Unmodified	1291.754	0.75400964	1920	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	11	1										1		1					21.959	21.959	2	7.4363E-05	19535	DP690-10	125.97	116.31			0.90128	1.0942	15.829	2	0	Median	34438000	17446000	16992000	9506	1920	8957	18755;18756	45706;45707;45708;45709;45710	45708		5	9606
LTFSCLGGSDNFK	1	0	Unmodified	1444.6657	0.66566492	1321	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	12	4								1								1	17.791	17.791	2	1.0784E-10	11164	DP690-8	222.28	166.02			0.91176	1.0186	6.9121	2	0	Median	67185000	33857000	33328000	9507	1321	8958	18757;18758	45711;45712;45713;45714;45715;45716;45717;45718;45719	45719		9	9606
LTFVGELAHGR	0	1	Unmodified	1198.6459	0.64585618	2373	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	11	0											1						15.422	15.422	3	0.008582	10081	DP690-11	79.07	52.954			1.7468	2.0847	NaN	1	0	Median	34897000	11791000	23106000	9508	2373	8959	18759	45720;45721;45722	45720		3	9606
LTGADGTPPGFLLK	1	0	Unmodified	1385.7555	0.7554662	1101	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	15	0															1		18.09	18.09	2	6.128600000000001E-25	12708	DP690-15	211.86	131.7			NaN	NaN	NaN	0	0	Median	30741000	30741000	0	9509	1101	8960	18760	45723;45724	45724		2	9606
LTGAGGGGCGITLLKPGLEQPEVEATK	2	0	Unmodified	2652.3793	0.37926631	1106	Q03426	MVK	Mevalonate kinase	yes	yes	0	0	1	14	0														1			17.186	17.186	3	2.327E-05	11918	DP690-14	108.49	86.821			0.36389	0.4081	NaN	1	0	Median	40895000	25105000	15790000	9510	1106	8961	18761	45725;45726;45727	45726		3	9606
LTGDLSHLAAIVILLLK	1	0	Unmodified	1789.1077	0.10770654	650	P33947	KDELR2	ER lumen protein-retaining receptor 2	yes	yes	0	0	0	9.73	0.617									4	6	1						27.361	27.361	2;3	0.00028711	22695	DP690-9	128.85	104.56			NaN	NaN	NaN	0	0	Median	143800000	143800000	0	9511	650	8962	18762;18763;18764;18765;18766;18767;18768;18769;18770;18771;18772	45728;45729;45730;45731;45732;45733;45734;45735;45736;45737;45738;45739	45736		12	9606
LTGIKHELQANCYEEVK	2	0	Unmodified	2031.0095	0.0095254139	572	P23528	CFL1	Cofilin-1	yes	yes	0	0	1	13.3	3.77								1								2	13.278	13.278	3;4	2.2545E-05	6299	DP690-16	124.29	94.706			0.87339	0.97268	3.0161	3	0	Plateau	69360000	37693000	31667000	9512	572	8963	18773;18774;18775	45740;45741;45742;45743;45744	45740		5	9606
LTGIKHELQANCYEEVKDR	2	1	Unmodified	2302.1376	0.13757947	572	P23528	CFL1	Cofilin-1	yes	yes	0	0	2	13.8	3.34								1							1	2	12.783	12.783	3;4	1.6201E-06	5868	DP690-16	138.28	138.28			0.88308	0.97554	20.416	3	0	Plateau	617670000	306340000	311340000	9513	572	8964	18776;18777;18778;18779	45745;45746;45747;45748;45749;45750;45751;45752;45753;45754;45755;45756	45749		11	9606
LTGKPGQVLPHPELCTVR	1	1	Unmodified	2001.083	0.082965128	1471	Q6GMV2	SMYD5	SET and MYND domain-containing protein 5	yes	yes	0	0	1	5	0					1												13.915	13.915	4	3.7537E-05	6830	DP690-5	119.04	108.55			0.82406	0.88344	NaN	1	0	Median	75149000	41528000	33621000	9514	1471	8965	18780	45757;45758;45759	45759		3	9606
LTGMERDLVAIEAKLSDLQK	2	1	Unmodified	2229.2039	0.20386813	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	2	14	0														1			19.98	19.98	3	0.076137	15505	DP690-14	70.091	5.6368			NaN	NaN	NaN	0	0	Median	152170000	152170000	0	9515	1080	8966	18781	45760	45760		1	9606
LTHSLQEELEK	1	0	Unmodified	1325.6827	0.68269519	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	4	0				1													18.588	18.588	2	0.061954	13079	DP690-4	58.246	11.059			0.90536	0.97532	NaN	1	0	Median	6565600	3493100	3072500	9516	1102	8967	18782	45761	45761		1	9606
LTIAFQAK	1	0	Unmodified	890.52255	0.52255314	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	11	0											1						15.635	15.635	2	0.056846	10312	DP690-11	102.77	28.257			NaN	NaN	NaN	0	0	Median	0	0	0	9517	264	8968	18783	45762	45762		1	9606
LTIIPNCMQELK	1	0	Oxidation (M)	1474.7524	0.75237144	2540				yes	yes	0	1	0	5	0					1												14.614	14.614	2	0.017578	7596	DP690-5	96.668	6.5193	+		NaN	NaN	NaN	0	0	Median	17454000	17454000	0	9518	2540	8969	18784	45763;45764	45764	2968	2	9606
LTISSPLEAHK	1	0	Unmodified	1194.6608	0.66083754	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10	0.816									1	1	1						14.286	14.286	3	0.00041462	8471	DP690-10	104.82	74.212			1.4073	1.7211	33.084	3	0	Plateau	225210000	89703000	135500000	9519	1329	8970	18785;18786;18787	45765;45766;45767;45768;45769;45770;45771;45772;45773;45774	45765		10	9606
LTLDTIFVPNTGK	1	0	Unmodified	1417.7817	0.78168095	2433	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	14.7	0.471														1	2		20.051	20.051	2	1.7226E-08	15174	DP690-15	203.02	124.91			0.66031	0.78936	NaN	1	0	Median	124320000	71767000	52550000	9520	2433	8971	18788;18789;18790	45775;45776;45777;45778;45779;45780	45780		6	9606
LTLDTIFVPNTGKK	2	0	Unmodified	1545.8766	0.87664397	2433	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	1	15	0															1		17.818	17.818	3	9.1973E-06	12452	DP690-15	131.79	111.05			0.76769	0.87942	NaN	1	0	Median	96161000	49770000	46392000	9521	2433	8972	18791	45781;45782	45782		2	9606
LTLHGLQQYYVK	1	0	Unmodified	1461.798	0.79799972	63;1237	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	no	no	0	0	0	9	4					1								1				16.406	16.406	3	5.3801E-05	10624	DP690-13	153.54	153.54			0.92873	0.99082	NaN	1	0	Median	615430000	314480000	300950000	9522	63;1237	8973	18792;18793	45783;45784;45785;45786;45787	45785		5	9606
LTLIDPETLLPR	0	1	Unmodified	1379.8024	0.8024164	1576	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	3	0			1														22.219	22.219	2	0.0001054	17688	DP690-3	132.88	132.88			0.81716	0.91995	NaN	1	0	Median	8607300	5174800	3432500	9523	1576	8974	18794	45788;45789;45790;45791	45788		4	9606
LTLKFICTTGK	2	0	Unmodified	1280.7162	0.71624393	57	CON__Q9U6Y5			yes	yes	0	0	1	7	0							1										15.735	15.735	3	0.00032619	9143	DP690-7	108.31	88.857		+	0.050629	0.05413	NaN	1	0	Median	246190000	232800000	13388000	9524	57	8975	18795	45792;45793	45793		2	
LTLLQVASR	0	1	Unmodified	999.60768	0.60767976	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										1							17.355	17.355	2	0.00063201	12845	DP690-10	236.21	95.229			0.78443	0.92334	NaN	1	0	Median	258000000	133860000	124140000	9525	311	8976	18796	45794;45795;45796;45797	45794		4	9606
LTLQPVDNSTISLQMGTNK	1	0	Oxidation (M)	2075.0569	0.056869537	1330	Q15417	CNN3	Calponin-3	yes	yes	0	1	0	11.7	4.03						1								1	1		17.33	17.33	2	1.6929E-13	12038	DP690-14	192.39	192.39			0.84099	0.95792	12.669	3	0	Median	411590000	234640000	176950000	9526	1330	8977	18797;18798;18799	45798;45799;45800;45801;45802;45803;45804;45805;45806;45807;45808;45809;45810	45799	2074	13	9606
LTLQPVDNSTISLQMGTNK	1	0	Unmodified	2059.062	0.061954915	1330	Q15417	CNN3	Calponin-3	yes	yes	0	0	0	14	0														1			18.76	18.76	2	1.2169E-29	13942	DP690-14	231.07	231.07			0.70762	0.80395	NaN	1	0	Median	330600000	186800000	143800000	9527	1330	8977	18800	45811;45812;45813;45814;45815;45816	45814		6	9606
LTLSALLDGK	1	0	Unmodified	1029.607	0.60701105	552	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	14.8	0.433														1	3		19.611	19.611	2	8.7367E-05	15121	DP690-14	159.58	0			0.81841	0.9657	2.7143	2	0	Median	178300000	92802000	85494000	9528	552	8978	18801;18802;18803;18804	45817;45818;45819;45820;45821;45822;45823;45824;45825	45819		9	9606
LTLSALVDGK	1	0	Unmodified	1015.5914	0.59136099	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	14.8	0.829														2	1	1	18.291	18.291	2	3.9606E-05	13532	DP690-14	191.17	106.43			0.86344	1.0275	7.4315	4	0	Median	969570000	515190000	454390000	9529	744	8979	18805;18806;18807;18808	45826;45827;45828;45829;45830;45831;45832;45833;45834;45835;45836;45837;45838	45829		13	9606
LTMQVSSLQR	0	1	Oxidation (M)	1177.6125	0.61250714	674	P35659	DEK	Protein DEK	yes	yes	0	1	0	13	0													1				12.107	12.107	2	0.00056763	4717	DP690-13	123.21	72.505			0.78407	0.92047	NaN	1	0	Median	137120000	75019000	62100000	9530	674	8980	18809	45839;45840;45841;45842	45842	978	4	9606
LTNAEGVEFK	1	0	Unmodified	1106.5608	0.56078914	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	12	0												1					13.701	13.701	2	0.00037286	7156	DP690-12	122.33	55.16			0.92991	1.108	NaN	1	0	Median	47009000	27191000	19818000	9531	288	8981	18810	45843;45844	45844		2	9606
LTPEEEEILNK	1	0	Unmodified	1313.6715	0.6714618	967	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	15	0															1		15.771	15.771	2	0.00017575	9763	DP690-15	168.26	128.2			0.90907	0.97014	NaN	1	0	Median	351060000	181690000	169370000	9532	967	8982	18811	45845;45846;45847;45848	45846		4	9606
LTPEELER	0	1	Unmodified	985.50803	0.50802529	322	O95399	UTS2	Urotensin-2	yes	yes	0	0	0	4	0				5													13.246	13.246	2	0.002747	6124	DP690-4	132.57	0			NaN	NaN	NaN	0	0	Median	84683000	84683000	0	9533	322	8983	18812;18813;18814;18815;18816	45849;45850;45851;45852;45853;45854	45850		6	9606
LTPEFSQR	0	1	Unmodified	976.49779	0.49779495	191	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	6	0						1											12.824	12.824	2	0.054137	5395	DP690-6	139.68	70.504			0.77871	0.8496	NaN	1	0	Median	56516000	31565000	24951000	9534	191	8984	18817	45855	45855		0	9606
LTPEYLELKK	2	0	Unmodified	1232.7016	0.70163972	257	O75477	ERLIN1	Erlin-1	yes	yes	0	0	1	14	0														1			14.394	14.394	3	0.040822	8050	DP690-14	50.452	19.628			0.79063	0.88505	NaN	1	0	Median	72909000	46274000	26635000	9535	257	8985	18818	45856	45856		1	9606
LTPITYPQGLAMAK	1	0	Oxidation (M)	1518.8116	0.81160087	1012	P63000	RAC1	Ras-related C3 botulinum toxin substrate 1	yes	yes	0	1	0	15.5	0.5															1	1	16.828	16.828	2	0.006166	10910	DP690-16	85.958	65.643			0.71859	0.84445	5.3085	2	0	Median	35838000	20837000	15000000	9536	1012	8986	18819;18820	45857;45858;45859;45860;45861;45862	45862	1535	6	9606
LTPLEACAHSFFDELRDPNVK	1	1	Unmodified	2458.1951	0.19509435	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	1	13	0													1				20.75	20.75	4	0.00038217	16383	DP690-13	86.573	70.56			0.71203	0.85111	NaN	1	0	Median	42121000	25222000	16898000	9537	811	8987	18821	45863;45864	45864		2	9606
LTPLILKPFGNSISR	1	1	Unmodified	1654.977	0.97702672	1292	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	1	11.3	1.7									1			1	1				18.43	18.43	3	7.984E-05	13789	DP690-12	117.7	110.19			0.76976	0.9295	1.2806	3	0	Plateau	123840000	69259000	54583000	9538	1292	8988	18822;18823;18824	45865;45866;45867;45868;45869;45870;45871;45872;45873;45874;45875;45876	45865		12	9606
LTPLPEDNSMNVDQDGDPSDR	0	1	Oxidation (M)	2329.9968	0.99684806	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									1	1							14.961	14.961	2	8.637999999999999E-19	8391	DP690-9	186.08	161.38			0.62472	0.75361	NaN	1	0	Median	56436000	20235000	36201000	9539	1046	8989	18825;18826	45877;45878;45879;45880;45881;45882	45880	1617	6	9606
LTPLPEDNSMNVDQDGDPSDR	0	1	Unmodified	2314.0019	0.0019334331	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								16.537	16.537	2	6.911E-23	10514	DP690-9	196.37	177.58			0.5472	0.68375	NaN	1	0	Median	11138000	7522500	3615400	9540	1046	8989	18827	45883;45884;45885;45886	45886		4	9606
LTPLPEDNSMNVDQDGDPSDRMEVQEQEEDISSLIR	0	2	2 Oxidation (M)	4132.8325	0.83249143	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	1	9	0									1								19.987	19.987	3	9.9018E-07	14783	DP690-9	70.062	65.485			0.62773	0.68043	NaN	1	0	Median	22039000	13481000	8558300	9541	1046	8990	18828	45887;45888;45889	45888	1617;1618	3	9606
LTPLSHEVISR	0	1	Unmodified	1250.6983	0.69828568	714	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	13	0													1				13.171	13.171	3	4.4614E-05	6186	DP690-13	136.5	104.9			0.75638	0.9113	NaN	1	0	Median	83065000	45333000	37732000	9542	714	8991	18829	45890;45891	45891		2	9606
LTPTSVLDYFGTGSVQR	0	1	Unmodified	1839.9367	0.93667805	664	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	10	0										1							21.403	21.403	2	0.00077767	18709	DP690-10	96.371	73.145			0.60547	0.76071	NaN	1	0	Median	11304000	6742000	4561500	9543	664	8992	18830	45892;45893;45894;45895	45895		4	9606
LTPVSPESSSTEEK	1	0	Unmodified	1489.7148	0.71478318	1215	Q13501	SQSTM1	Sequestosome-1	yes	yes	0	0	0	4	0				1													11.861	11.861	2	6.9413E-05	4455	DP690-4	124.42	57.089			0.85385	0.91528	NaN	1	0	Median	4248200	1843000	2405300	9544	1215	8993	18831	45896;45897;45898	45897		3	9606
LTPYEVDELRR	0	2	Unmodified	1389.7252	0.72522871	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	1	11.5	0.5											2	2					14.548	14.548	2;3	2.1615E-05	8292	DP690-12	167.09	138.13			0.70123	0.91996	8.8298	4	0	Linear	1614599999.9999998	914030000	700530000	9545	1793	8994	18832;18833;18834;18835	45899;45900;45901;45902;45903;45904;45905;45906;45907;45908;45909;45910;45911	45905		13	9606
LTQDEIISK	1	0	Unmodified	1045.5655	0.56554017	1135	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	4	0				1													13.104	13.104	2	0.0057755	6099	DP690-4	96.668	50.652			1.1361	1.2283	NaN	1	0	Median	8124800	3340500	4784300	9546	1135	8995	18836	45912	45912		1	9606
LTQDQDVDVK	1	0	Unmodified	1159.5721	0.57208211	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	8	4				1								1					11.107	11.107	2	1.8194E-05	3668	DP690-12	179.1	102.88			1.3025	1.4575	59.289	2	0	Median	136950000	72713000	64235000	9547	624	8996	18837;18838	45913;45914;45915;45916;45917;45918;45919	45916		7	9606
LTQEETNFK	1	0	Unmodified	1108.5401	0.5400537	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	5	3.56		1	1							1							11.873	11.873	2	0.003039	4024	DP690-2	107.69	72.255			0.92936	1.1476	21.719	3	0	Median	143280000	70774000	72501000	9548	2215	8997	18839;18840;18841	45920;45921;45922;45923	45921		4	9606
LTQELQQAK	1	0	Unmodified	1057.5768	0.57677356	794	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	10	0										1							10.853	10.853	2	0.067198	3519	DP690-10	62.107	27.3			0.98142	1.2064	NaN	1	0	Median	42476000	22423000	20053000	9549	794	8998	18842	45924	45924		1	9606
LTQEQVSDSQVLIR	0	1	Unmodified	1614.8577	0.85769944	2289	Q9P0I2	EMC3	ER membrane protein complex subunit 3	yes	yes	0	0	0	15	0															1		15.889	15.889	2	2.6804E-15	9939	DP690-15	232.56	173.93			1.0541	1.2201	NaN	1	0	Median	15071000	7839100	7232100	9550	2289	8999	18843	45925;45926;45927;45928	45926		4	9606
LTQILSYLR	0	1	Unmodified	1105.6495	0.64954457	1180	Q13123	IK	Protein Red	yes	yes	0	0	0	11	0											1						19.063	19.063	2	0.00059482	15276	DP690-11	189.82	143.4			0.66165	0.79347	NaN	1	0	Median	59579000	36103000	23476000	9551	1180	9000	18844	45929;45930;45931;45932	45929		4	9606
LTQLELINK	1	0	Unmodified	1070.6336	0.63356015	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								15.982	15.982	2	0.0059872	9865	DP690-9	95.815	26.188			0.75807	0.96443	NaN	1	0	Median	7990000	4851200	3138800	9552	1762	9001	18845	45933;45934	45933		2	9606
LTQNADCVVVLDNTALNR	0	1	Unmodified	2015.0106	0.010588046	567	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	13	0													1				17.76	17.76	2	3.2281E-31	12506	DP690-13	318.07	272.81			0.74246	0.90465	NaN	1	0	Median	43108000	22362000	20746000	9553	567	9002	18846	45935;45936;45937;45938;45939;45940	45938		6	9606
LTQQLEFEK	1	0	Unmodified	1134.5921	0.59208927	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	11	0											2						14.552	14.552	2	0.042014	8701	DP690-11	115.49	56.898			NaN	NaN	NaN	0	0	Median	0	0	0	9554	2302	9003	18847;18848	45941;45942	45941		2	9606
LTQQLIEFEK	1	0	Unmodified	1247.6762	0.67615325	1511	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	2	0		1															17.03	17.03	2	0.018478	10156	DP690-2	104.05	55.957			NaN	NaN	NaN	0	0	Median	0	0	0	9555	1511	9004	18849	45943	45943		1	9606
LTQTSGETTHTDKEPVGEGK	2	0	Unmodified	2114.0128	0.012756116	749	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	9	0									1								10.2	10.2	4	0.00034053	2380	DP690-9	88.565	60.498			1.4027	1.7187	NaN	1	0	Median	5053400	2322200	2731300	9556	749	9005	18850	45944;45945	45944		2	9606
LTQTSGETTHTDKVPGGEDK	2	0	Unmodified	2099.9971	0.99710605	749	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	9	0									1								10.294	10.294	4	0.0011995	2503	DP690-9	71.842	47.137			0.85681	1.0435	NaN	1	0	Median	6390400	3720400	2670000	9557	749	9006	18851	45946;45947	45946		2	9606
LTQTSGETTHTHTEPTGDGK	1	0	Unmodified	2096.9611	0.9610549	749	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	10.5	0.5										1	1						10.26	10.26	4	0.00012421	2570	DP690-10	123.63	67.782			0.71547	0.87425	18.511	2	0	Median	213500000	122610000	90890000	9558	749	9007	18852;18853	45948;45949;45950;45951	45948		4	9606
LTQVLNTHYVAPR	0	1	Unmodified	1510.8256	0.82561145	834;835	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	10	0										1							13.864	13.864	3	0.00042976	7860	DP690-10	100.04	61.671			0.70968	0.83459	NaN	1	0	Median	261060000	158770000	102290000	9559	834;835	9008	18854	45952;45953;45954	45952		3	9606
LTQYIDGQGRPR	0	2	Unmodified	1402.7317	0.73171107	1223	Q13555;Q13554	CAMK2G;CAMK2B	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta	yes	no	0	0	1	10	3.46				1								3					11.858	11.858	2;3	4.8846E-07	4668	DP690-12	163.88	110.75			0.72562	0.82274	12.776	3	0	Plateau	168510000	101970000	66539000	9560	1223	9009	18855;18856;18857;18858	45955;45956;45957;45958;45959;45960;45961;45962;45963	45959		9	9606
LTRDETNYGIPQR	0	2	Unmodified	1561.7849	0.78486885	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	1	14	0														2			12.73	12.73	2;3	0.00032826	5699	DP690-14	130.1	98.089			0.76876	0.90342	4.6841	2	0	Median	397740000	223000000	174740000	9561	1022	9010	18859;18860	45964;45965;45966;45967;45968;45969;45970	45968		7	9606
LTSADALRPSVVSITGPLIR	0	2	Unmodified	2065.1895	0.18953869	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	9.5	0.5									1	1							19.152	19.152	3	5.4845E-05	15489	DP690-10	112.91	112.91			0.72432	0.823	18.944	2	0	Median	146130000	94092000	52041000	9562	1782	9011	18861;18862	45971;45972;45973;45974;45975;45976	45972		6	9606
LTSDDVKEQIYK	2	0	Unmodified	1437.7351	0.73512469	975	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	16	0																2	13.796	13.796	2;3	2.4153E-05	6974	DP690-16	134.75	89.474			0.93621	1.0405	0.64708	2	0	Median	333900000	168560000	165340000	9563	975	9012	18863;18864	45977;45978;45979;45980;45981;45982;45983	45982		7	9606
LTSFIGAIAIGDLVK	1	0	Unmodified	1516.8865	0.88648038	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	6.67	3.77				2								1					23.025	23.025	2	0.0003435	17888	DP690-4	110.31	93.28			1.0948	1.2462	37.091	2	0	Median	6361300	2538200	3823100	9564	1044	9013	18865;18866;18867	45984;45985;45986;45987;45988;45989	45987		6	9606
LTSFITVFK	1	0	Unmodified	1054.6063	0.60628277	1228	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	3.5	0.5			1	1													19.619	19.619	2	0.0013109	14722	DP690-3	122.52	9.1048			18	19.162	NaN	1	0	Median	30395000	1045500	29350000	9565	1228	9014	18868;18869	45990;45991;45992;45993	45992		4	9606
LTSFSFLLK	1	0	Unmodified	1054.6063	0.60628277	2556				yes	yes	0	0	0	3	0			1														19.632	19.632	2	0.0010098	14666	DP690-3	125.81	1.7339	+		18	19.162	NaN	1	0	Median	27986000	1045500	26941000	9566	2556	9015	18870	45994	45994		1	9606
LTSLGVIGALVK	1	0	Unmodified	1169.7384	0.73835958	1780	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	0	0	15	0															1		20.612	20.612	2	0.0020165	15900	DP690-15	94.692	80.485			0.90252	1.0641	NaN	1	0	Median	9700200	5025100	4675100	9567	1780	9016	18871	45995;45996;45997	45997		3	9606
LTSLNEEYTK	1	0	Unmodified	1196.5925	0.5924832	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	7	4			1								1						13.374	13.374	2	4.1133E-05	7059	DP690-11	183.43	145.16			0.97182	1.0509	16.704	2	0	Median	312970000	161560000	151400000	9568	736	9017	18872;18873	45998;45999;46000;46001;46002;46003;46004	46000		7	9606
LTSLVPFVDAFQLER	0	1	Unmodified	1733.9352	0.93522148	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	9	2.77			1						1	2	2						23.531	23.531	2	2.12E-17	21353	DP690-10	196.11	152.6			1.1092	1.2782	10.45	2	0	Median	48696000	41129000	7567100	9569	1252	9018	18874;18875;18876;18877;18878;18879	46005;46006;46007;46008;46009;46010;46011;46012;46013;46014;46015;46016;46017	46006		13	9606
LTSMHFYGWK	1	0	Unmodified	1268.6012	0.60121417	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	11	0											1						16.279	16.279	3	0.020036	11302	DP690-11	61.353	46.477			0.93318	1.1373	NaN	1	0	Median	32378000	17146000	15231000	9570	574	9019	18880	46018;46019	46018		2	9606
LTSTVMLWLQTNK	1	0	Oxidation (M)	1549.8174	0.81741453	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	1	0	14	0														1			18.812	18.812	2	0.0030347	14049	DP690-14	93.442	64.484			0.81634	0.99239	NaN	1	0	Median	50787000	29376000	21411000	9571	769	9020	18881	46020;46021;46022	46020	1144	3	9606
LTSTVMLWLQTNK	1	0	Unmodified	1533.8225	0.82249991	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	14	0														1			20.464	20.464	2	1.1331E-09	16183	DP690-14	246.63	246.63			0.9021	1.0873	NaN	1	0	Median	98633000	53449000	45185000	9572	769	9020	18882	46023;46024;46025;46026	46024		4	9606
LTTDPDLILEVLR	0	1	Unmodified	1496.845	0.84500949	1520	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	9.6	3.32			1								3	1					23.233	23.233	2	5.6923E-05	19763	DP690-12	125.74	89.294			0.83107	0.95322	18.975	2	0	Median	16307000	14722000	1585100	9573	1520	9021	18883;18884;18885;18886;18887	46027;46028;46029;46030;46031;46032;46033	46030		7	9606
LTTEATQTPVSNK	1	0	Unmodified	1388.7147	0.7147236	2041	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	12	0												1					11.17	11.17	2	1.4423E-05	3723	DP690-12	184.71	143.98			0.69534	0.83599	NaN	1	0	Median	18734000	9354000	9379900	9574	2041	9022	18888	46034;46035;46036;46037	46037		4	9606
LTTINCEEGDKLK	2	0	Unmodified	1519.7552	0.75520821	1367	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	1	11	0											2						12.485	12.485	3	0.015671	5702	DP690-11	87.719	32.849			NaN	NaN	NaN	0	0	Median	0	0	0	9575	1367	9023	18889;18890	46038;46039	46039		2	9606
LTTLELLEVR	0	1	Unmodified	1185.6969	0.69688869	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	9.67	0.471									1	2							20.027	20.027	2	0.0025769	16750	DP690-10	133.57	65.191			0.79056	0.98316	NaN	1	0	Median	32729000	1594300	31134000	9576	1080	9024	18891;18892;18893	46040;46041;46042;46043	46040		4	9606
LTTPTYGDLNHLVSATMSGVTTCLR	0	1	Oxidation (M)	2723.3259	0.32585053	1034;406;2017;370	P07437;P68371;Q9BVA1;Q13885;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain	no	no	0	1	0	8.8	3.49					1	1	1						2				20.209	20.209	2;3	0.0001893	15514	DP690-13	103.29	103.29			1.0095	1.067	21.873	5	0	Median	1407500000	702770000	704700000	9577	406;1034;2017;370	9025	18894;18895;18896;18897;18898	46044;46045;46046;46047;46048;46049;46050;46051;46052;46053;46054;46055;46056;46057;46058;46059	46044	391	16	9606
LTTPTYGDLNHLVSATMSGVTTCLR	0	1	Unmodified	2707.3309	0.33093591	1034;406;2017;370	P07437;P68371;Q9BVA1;Q13885;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain	no	no	0	0	0	7.67	3.77					2								1				22.542	22.542	2;3	3.6105E-07	17388	DP690-5	139.45	118.99			0.9549	1.0591	2.1329	2	0	Median	573780000	285840000	287940000	9578	406;1034;2017;370	9025	18899;18900;18901	46060;46061;46062;46063;46064;46065;46066;46067;46068;46069;46070;46071;46072;46073;46074	46066		15	9606
LTTPTYGDLNHLVSATMSGVTTSLR	0	1	Oxidation (M)	2650.3272	0.32723074	2010	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	1	0	7.67	3.77					2								1				20.235	20.235	3	0.00030324	14569	DP690-5	79.172	67.092			1.01	1.0553	14.55	3	0	Plateau	103270000	47409000	55857000	9579	2010	9026	18902;18903;18904	46075;46076;46077;46078;46079	46078	2546	5	9606
LTTPTYGDLNHLVSATMSGVTTSLR	0	1	Unmodified	2634.3323	0.33231612	2010	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	5	0					1												22.743	22.743	3	1.7441E-05	17691	DP690-5	124.31	107.08			0.94167	0.98723	NaN	1	0	Median	29001000	13105000	15895000	9580	2010	9026	18905	46080;46081;46082;46083	46080		4	9606
LTTVCPTSKPQTQGLAK	2	0	Unmodified	1828.9717	0.97168334	477	P12931	SRC	Proto-oncogene tyrosine-protein kinase Src	yes	yes	0	0	1	12	0												1					12.029	12.029	3	2.2988E-06	4782	DP690-12	128.74	102.92			0.74236	0.84499	NaN	1	0	Median	82317000	38697000	43620000	9581	477	9027	18906	46084;46085	46084		2	9606
LTTVCPTVKPQTQGLAK	2	0	Unmodified	1841.0081	0.0080688509	412	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	0	1	12	0												2					13.107	13.107	2;3	1.1957E-08	6318	DP690-12	185.57	142.07			0.64518	0.73263	2.1153	2	0	Median	315400000	193690000	121710000	9582	412	9028	18907;18908	46086;46087;46088;46089;46090;46091;46092;46093	46091		8	9606
LTVAENEAETK	1	0	Unmodified	1203.5983	0.59829686	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	6	4		1								1							11.568	11.568	2	0.00010706	3636	DP690-2	148.91	90.684			0.88832	0.99208	10.268	2	0	Median	156260000	95258000	60999000	9583	408	9029	18909;18910	46094;46095;46096;46097;46098;46099;46100;46101	46098		8	9606
LTVDEAVR	0	1	Unmodified	901.4869	0.48689592	1319	Q15149	PLEC	Plectin	yes	no	0	0	0	10.2	0.829									1	1	2						13.287	13.287	2	1.7514E-05	7093	DP690-10	158.36	62.564			0.80928	0.85099	NaN	1	0	Median	851730000	196800000	654930000	9584	1319	9030	18911;18912;18913;18914	46102;46103;46104;46105;46106	46103		4	9606
LTVEDLEKER	1	1	Unmodified	1230.6456	0.6455814	1345	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	1	15	0															1		15.221	15.221	3	5.7011E-05	9108	DP690-15	136.96	71.801			0.9764	1.114	NaN	1	0	Median	41766000	19962000	21805000	9585	1345	9031	18915	46107;46108;46109;46110	46108		4	9606
LTVEDPVTVEYITR	0	1	Unmodified	1633.8563	0.85630246	115	O14818;Q8TAA3	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	yes	no	0	0	0	11	4							1								1		18.831	18.831	2	4.9487E-05	13113	DP690-7	156.01	118.32			0.82689	0.95238	NaN	1	0	Median	18555000	8720700	9834300	9586	115	9032	18916;18917	46111;46112;46113;46114;46115;46116;46117	46114		7	9606
LTVEEAVR	0	1	Unmodified	915.50255	0.50254598	1319;2411	Q15149;Q9UPN3	PLEC;MACF1	Plectin;Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	no	no	0	0	0	10	1									1		1						13.586	13.586	2	0.041902	6659	DP690-9	124.34	49.928			0.78468	0.89773	NaN	1	0	Median	82690000	43134000	39556000	9587	1319;2411	9033	18918;18919	46118;46119	46119		1	9606
LTVMYSQINGASR	0	1	Unmodified	1438.7238	0.7238485	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	12	0												1					15.795	15.795	2	4.4705E-08	10127	DP690-12	197.79	170.02			0.79736	0.94617	NaN	1	0	Median	50640000	27479000	23161000	9588	1269	9034	18920	46120;46121	46120		2	9606
LTVMYSQINGASR	0	1	Oxidation (M)	1454.7188	0.71876312	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	1	0	8.33	3.3				1					1			1					14.581	14.581	2	0.0003989	7958	DP690-9	117.14	81.625			0.93871	1.1326	3.1952	2	0	Median	44489000	7404800	37084000	9589	1269	9034	18921;18922;18923	46122;46123;46124;46125;46126;46127;46128;46129	46127	1939	8	9606
LTVNDFVR	0	1	Unmodified	962.51853	0.5185304	2359;274	O75746;Q9UJS0	SLC25A12;SLC25A13	Calcium-binding mitochondrial carrier protein Aralar1;Calcium-binding mitochondrial carrier protein Aralar2	no	no	0	0	0	12	0												1					17.256	17.256	2	0.049979	12112	DP690-12	117.16	67.57			0.87113	0.95517	NaN	1	0	Median	352760000	191840000	160920000	9590	274;2359	9035	18924	46130	46130		0	9606
LTVNYEQCASGVHGPEGFHYK	1	0	Unmodified	2392.0906	0.090629281	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	12	0												2					15.064	15.064	3;4	0.00022403	9054	DP690-12	106.75	83.846			NaN	NaN	NaN	0	0	Median	66639000	66639000	0	9591	538	9036	18925;18926	46131;46132;46133	46131		3	9606
LTVQEEQIVELIEK	1	0	Unmodified	1669.9138	0.91381734	859	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	11	0											1						21.905	21.905	2	4.4483E-09	19128	DP690-11	199.82	199.82			0.46411	0.57105	NaN	1	0	Median	19118000	8277800	10840000	9592	859	9037	18927	46134;46135	46135		2	9606
LTVSSLQESGLK	1	0	Unmodified	1260.6925	0.6925316	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.71	3.37		1							1	1	2	1	1				15.758	15.758	2	0.00011363	10625	DP690-10	176.38	90.246			0.81076	0.91246	16.857	4	0	Median	1663999999.9999998	872690000	791350000	9593	549	9038	18928;18929;18930;18931;18932;18933;18934	46136;46137;46138;46139;46140;46141;46142;46143;46144;46145;46146;46147;46148;46149;46150;46151;46152;46153	46137		18	9606
LTVSSLQESGLKVNQPASFAVSLNGAK	2	0	Unmodified	2744.4709	0.47085851	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10	0										3							18.726	18.726	3	0.00034884	14997	DP690-10	87.952	60.048			NaN	NaN	NaN	0	0	Median	0	0	0	9594	549	9039	18935;18936;18937	46154;46155;46156	46156		3	9606
LTVTSLQETGLK	1	0	Unmodified	1288.7238	0.72383172	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										1							16.368	16.368	2	0.00058412	11545	DP690-10	109.79	81.708			1.225	1.4354	NaN	1	0	Median	300190000	156290000	143900000	9595	1270	9040	18938	46157;46158;46159;46160;46161	46160		5	9606
LTVVDTPGYGDAINCR	0	1	Unmodified	1749.8356	0.83558379	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	14	0														1			16.613	16.613	2	1.942E-27	11038	DP690-14	289.59	253.07			0.76885	0.90729	NaN	1	0	Median	133790000	71715000	62078000	9596	1310	9041	18939	46162;46163;46164;46165	46162		4	9606
LTWEATPR	0	1	Unmodified	972.50288	0.50288033	1599	Q8IUQ4	SIAH1	E3 ubiquitin-protein ligase SIAH1	no	no	0	0	0	14	0														1			14.526	14.526	2	0.046606	8130	DP690-14	98.299	45.363			NaN	NaN	NaN	0	0	Median	25205000	25205000	0	9597	1599	9042	18940	46166;46167	46166		2	9606
LTWHSCPEDEAQ	0	0	Unmodified	1471.6038	0.60379294	1189	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	13	3.56								1							1	1	14.112	14.112	2	0.0011874	7477	DP690-15	138.06	109.49			NaN	NaN	NaN	0	0	Median	0	0	0	9598	1189	9043	18941;18942;18943	46168;46169;46170;46171;46172;46173	46169		6	9606
LTYLLQNSLGGSAK	1	0	Unmodified	1463.7984	0.79839365	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11	0											2						17.611	17.611	2	2.3104E-07	13079	DP690-11	171.49	109.84			NaN	NaN	NaN	0	0	Median	45817000	27206000	18612000	9599	2024	9044	18944;18945	46174;46175;46176;46177	46174		4	9606
LTYNQINDVIK	1	0	Unmodified	1319.7085	0.70851601	1824	Q96BD8	SKA1	Spindle and kinetochore-associated protein 1	yes	yes	0	0	0	15	0															1		17.123	17.123	2	0.00013398	11571	DP690-15	136.99	107.25			0.96972	1.1424	NaN	1	0	Median	31302000	15737000	15565000	9600	1824	9045	18946	46178;46179;46180;46181;46182	46181		5	9606
LTYTMILNLLR	0	1	Oxidation (M)	1365.769	0.76900778	1335	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	1	0	10	0										1							22.797	22.797	2	0.010055	20534	DP690-10	86.136	68.915			0.73218	0.90739	NaN	1	0	Median	6725400	4734100	1991400	9601	1335	9046	18947	46183	46183	2088	1	9606
LVAEDIPLLFSLLSDVFPGVQYHR	0	1	Unmodified	2727.4636	0.46358829	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								28.423	28.423	3	0.0065765	23527	DP690-9	55.228	55.228			0.84819	0.98501	NaN	1	0	Median	981800	499230	482570	9602	1264	9047	18948	46184;46185;46186;46187	46187		4	9606
LVAEWEGQDSDSDQLFYTK	1	0	Unmodified	2230.0066	0.0066081055	1097	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	11	0											1						19.375	19.375	2	3.5397E-13	15755	DP690-11	183.06	165.93			0.78619	0.96828	NaN	1	0	Median	18516000	11614000	6902400	9603	1097	9048	18949	46188	46188		1	9606
LVAGEMGQNEPDQGGQR	0	1	Oxidation (M)	1800.8061	0.80607458	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	1	0	13.6	3.32							1								3	1	11.294	11.294	2	1.0203E-17	2989	DP690-15	223.36	198.06			0.75402	0.84442	1.6677	2	0	Median	235450000	135980000	99463000	9604	1953	9049	18950;18951;18952;18953;18954	46189;46190;46191;46192;46193;46194;46195;46196;46197;46198;46199;46200;46201	46189	2492	13	9606
LVAGEMGQNEPDQGGQR	0	1	Unmodified	1784.8112	0.81115996	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	11	4							1								1		12.62	12.62	2	2.7847E-24	5527	DP690-15	270.67	238.91			0.82272	0.95117	3.7812	2	0	Median	27265000	13557000	13708000	9605	1953	9049	18955;18956	46202;46203;46204;46205;46206;46207;46208;46209;46210	46204		9	9606
LVAGQQQVLQQLAEEEPK	1	0	Unmodified	2007.0637	0.063669474	1091	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	yes	yes	0	0	0	10	0										1							18.957	18.957	2	0.00035818	15220	DP690-10	174.21	121.42			NaN	NaN	NaN	0	0	Median	0	0	0	9606	1091	9050	18957	46211	46211		1	9606
LVAGSTDQLLSAFVPPEEPPLQPAR	0	1	Unmodified	2631.3908	0.39081727	1247	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	11	0											1						22.409	22.409	2	4.0397E-05	19762	DP690-11	115.38	88.129			NaN	NaN	NaN	0	0	Median	8286600	8286600	0	9607	1247	9051	18958	46212;46213	46212		2	9606
LVAIVDVIDQNR	0	1	Unmodified	1353.7616	0.76161421	825	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	15	0															2		19.57	19.57	2	0.00052677	14611	DP690-15	111.06	71.909			0.94771	1.0974	9.2226	2	0	Median	32140000	15965000	16175000	9608	825	9052	18959;18960	46214;46215;46216	46214		3	9606
LVALNLDR	0	1	Unmodified	912.53927	0.53926584	2468	Q9Y3D3	MRPS16	28S ribosomal protein S16, mitochondrial	yes	yes	0	0	0	16	0																1	15.904	15.904	2	0.0004097	9747	DP690-16	143.85	72.139			NaN	NaN	NaN	0	0	Median	22968000	0	22968000	9609	2468	9053	18961	46217;46218	46217		2	9606
LVAMGSAWPWLLHSVR	0	1	Unmodified	1821.9712	0.97122983	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										1							20.972	20.972	3	0.061968	18348	DP690-10	61.657	28.392			NaN	NaN	NaN	0	0	Median	4165100	4165100	0	9610	1158	9054	18962	46219	46219		1	9606
LVARPEPATGYTLEFR	0	2	Unmodified	1818.9628	0.96283322	1366	Q16658	FSCN1	Fascin	yes	yes	0	0	1	8	4				1								1					16.23	16.23	3	2.3487E-07	10159	DP690-4	152.94	123.58			0.74854	0.81589	19.519	2	0	Median	184550000	117170000	67379000	9611	1366	9055	18963;18964	46220;46221;46222;46223;46224;46225;46226	46224		7	9606
LVASAYSIAQK	1	0	Unmodified	1149.6394	0.63937381	344	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	6	0						1											14.112	14.112	2	0.0002674	7066	DP690-6	120.99	120.99			1.9355	2.1939	NaN	1	0	Median	19882000	7208300	12673000	9612	344	9056	18965	46227;46228	46228		2	9606
LVASMEEAR	0	1	Unmodified	1004.4961	0.4960804	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								12.426	12.426	2	0.00067876	5099	DP690-9	141.52	114.39			0.7841	0.94198	NaN	1	0	Median	35468000	18774000	16694000	9613	1319	9057	18966	46229;46230;46231;46232	46230		4	9606
LVASMEEARR	0	2	Unmodified	1160.5972	0.59719142	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							10.833	10.833	3	0.0024362	3179	DP690-9	85.676	49.091			0.66603	0.72195	NaN	1	0	Median	9427900	7992300	1435600	9614	1319	9058	18967;18968	46233;46234;46235;46236	46235		4	9606
LVCYDLFHWACLNER	0	1	Unmodified	1994.9131	0.91312261	305	O95159	ZFPL1	Zinc finger protein-like 1	yes	yes	0	0	0	14	0														1			20.838	20.838	3	0.042922	16659	DP690-14	68.262	36.11			NaN	NaN	NaN	0	0	Median	0	0	0	9615	305	9059	18969	46237	46237		1	9606
LVDAVLGAEIR	0	1	Unmodified	1154.6659	0.66592292	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	3	0.816		1	1	1													17.582	17.582	2	7.9109E-05	11964	DP690-3	139.98	88.03			0.80612	0.79885	16.339	3	0	Plateau	387100000	212750000	174350000	9616	2316	9060	18970;18971;18972	46238;46239;46240;46241;46242;46243;46244;46245;46246;46247	46241		10	9606
LVDEPGHCADFHPSGTVVAIGTHSGR	0	1	Unmodified	2715.2823	0.28234623	2165	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	11	0											2						14.087	14.087	5	0.0058185	8074	DP690-11	46.145	21.863			NaN	NaN	NaN	0	0	Median	228230000	130810000	97421000	9617	2165	9061	18973;18974	46248;46249	46248		2	9606
LVDGTGHRPHYSLR	0	2	Unmodified	1606.8328	0.8328221	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	1	9	0									1								10.532	10.532	4	0.067361	2859	DP690-9	39.006	23.844			0.95179	1.0317	NaN	1	0	Median	19893000	10113000	9780400	9618	2217	9062	18975	46250	46250		1	9606
LVDLPLGLPFYK	1	0	Unmodified	1373.7959	0.79587446	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	10	0										1							22.536	22.536	2	0.00046117	20188	DP690-10	113.22	87.281			0.72755	0.89429	NaN	1	0	Median	41218000	24000000	17217000	9619	1282	9063	18976	46251;46252;46253;46254	46254		4	9606
LVDNFQHEENLLQQVASK	1	0	Unmodified	2111.0647	0.064732107	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	10	0										1							18.713	18.713	3	0.00073678	14940	DP690-10	81.639	81.639			0.99383	1.2289	NaN	1	0	Median	71805000	29628000	42177000	9620	1282	9064	18977	46255	46255		1	9606
LVDQSGPPHEPK	1	0	Unmodified	1302.6568	0.65681479	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	9.67	0.943									2		1						10.359	10.359	2;3	1.8232E-05	2674	DP690-11	126.66	105.63			0.56714	0.62121	10.561	2	0	Median	1047499999.9999999	553730000	493810000	9621	897	9065	18978;18979;18980	46256;46257;46258;46259;46260;46261;46262;46263;46264;46265;46266	46256		11	9606
LVDSVKENAGTVR	1	1	Unmodified	1386.7467	0.74669243	1988	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	1	14	0														2			10.85	10.85	3	0.003381	3243	DP690-14	127.02	74.325			NaN	NaN	NaN	0	0	Median	0	0	0	9622	1988	9066	18981;18982	46267;46268	46267		2	9606
LVDTGDKFR	1	1	Unmodified	1049.5506	0.55055881	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							11.255	11.255	3	0.010094	4055	DP690-10	109.71	53.28			NaN	NaN	NaN	0	0	Median	0	0	0	9623	1080	9067	18983	46269	46269		1	9606
LVDVVAVILK	1	0	Unmodified	1067.6954	0.69543213	2005	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	3	0			1														21.35	21.35	2	0.0017172	16749	DP690-3	104.06	73.981			1.2224	1.2798	NaN	1	0	Median	3787200	1607800	2179400	9624	2005	9068	18984	46270;46271;46272;46273;46274	46272		5	9606
LVEALAAATEK	1	0	Unmodified	1114.6234	0.6233894	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	0	13	3.56								1							1	1	14.976	14.976	2	2.2479E-06	8651	DP690-15	216.12	137.01			0.81725	0.90154	3.4352	3	0	Plateau	584980000	317220000	267760000	9625	1983	9069	18985;18986;18987	46275;46276;46277;46278;46279;46280;46281	46277		7	9606
LVEALCAEHQINLIK	1	0	Unmodified	1749.9447	0.94474031	582	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	16	0																2	16.905	16.905	2;3	1.7539E-05	11034	DP690-16	100.11	100.11			1.0902	1.2567	16.553	2	0	Median	47752000	23176000	24575000	9626	582	9070	18988;18989	46282;46283;46284;46285;46286;46287;46288;46289	46289		8	9606
LVEDMENKIR	1	1	Oxidation (M)	1261.6336	0.63363651	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	1	1	14.5	0.5														1	1		10.512	10.512	3	0.00027667	2898	DP690-15	111.61	70.613			0.73146	0.84678	3.0536	2	0	Median	147800000	87099000	60697000	9627	769	9071	18990;18991	46290;46291;46292;46293	46291	1145	4	9606
LVEDMENKIR	1	1	Unmodified	1245.6387	0.63872189	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	1	14	0														1			13.198	13.198	3	0.052614	6472	DP690-14	51.762	22.699			0.9436	1.063	NaN	1	0	Median	191450000	94656000	96790000	9628	769	9071	18992	46294	46294		1	9606
LVEEEVNIPNRR	0	2	Unmodified	1466.7841	0.78414057	2275	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	1	6	0						1											13.277	13.277	3	0.00043623	5990	DP690-6	99.788	50.508			0.71079	0.76447	NaN	1	0	Median	28492000	16044000	12448000	9629	2275	9072	18993	46295;46296;46297;46298	46297		4	9606
LVEGLDQFTGEVISSVSELQSLK	1	0	Unmodified	2477.2901	0.29010018	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								25.823	25.823	2	1.6786000000000002E-20	21418	DP690-9	204.13	153.04			NaN	NaN	NaN	0	0	Median	0	0	0	9630	2217	9073	18994	46299	46299		1	9606
LVEGPPPPPEPPK	1	0	Unmodified	1352.734	0.73400248	2243	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	yes	yes	0	0	0	16	0																2	13.761	13.761	2	0.0049273	6937	DP690-16	119.53	66.035			NaN	NaN	NaN	0	0	Median	0	0	0	9631	2243	9074	18995;18996	46300;46301	46300		2	9606
LVEHFCAEFK	1	0	Unmodified	1278.6067	0.60669348	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														14.505	14.505	3	0.058332	8029	DP690-3	47.559	20.59			0.99532	1.0678	NaN	1	0	Median	20784000	10107000	10678000	9632	1778	9075	18997	46302;46303	46302		2	9606
LVEHGLNETIHIR	0	1	Unmodified	1529.8314	0.83142511	1539	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	12	0												1					13.375	13.375	4	0.028285	6760	DP690-12	69.846	37.23			NaN	NaN	NaN	0	0	Median	6410100	6410100	0	9633	1539	9076	18998	46304	46304		1	9606
LVEHLHNFILFR	0	1	Unmodified	1536.8565	0.85651765	606	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	12	0												1					17.133	17.133	3	0.046448	12073	DP690-12	67.93	38.242			NaN	NaN	NaN	0	0	Median	14191000	0	14191000	9634	606	9077	18999	46305	46305		1	9606
LVEIDNGK	1	0	Unmodified	886.476	0.47599688	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11	0											1						11.63	11.63	2	0.049109	4503	DP690-11	117.93	71.918			0.99682	1.1867	NaN	1	0	Median	106220000	61208000	45011000	9635	359	9078	19000	46306	46306		0	9606
LVEKGETDLIQK	2	0	Unmodified	1371.7609	0.76094551	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	10	0										1							12.447	12.447	3	0.00126	5747	DP690-10	90.434	58.445			0.78185	0.93692	NaN	1	0	Median	136760000	76586000	60179000	9636	732	9079	19001	46307;46308	46307		2	9606
LVEKPSPLTLAPHDFANIK	2	0	Unmodified	2089.1572	0.15717593	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	11	0											1						16.573	16.573	4	0.00019294	11694	DP690-11	95.9	69.35			0.71871	0.79873	NaN	1	0	Median	266530000	155420000	111120000	9637	877	9080	19002	46309;46310;46311;46312	46311		4	9606
LVELLMHNDYK	1	0	Oxidation (M)	1389.6962	0.69623677	851;215	P52294;O15131;O60684	KPNA1;KPNA5;KPNA6	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-6;Importin subunit alpha-7	no	no	0	1	0	12	0												1					14.649	14.649	3	0.07814	8472	DP690-12	44.614	22.568			1.1549	1.3797	NaN	1	0	Median	35388000	16413000	18975000	9638	851;215	9081	19003	46313	46313		1	9606
LVELLMHNDYK	1	0	Unmodified	1373.7013	0.70132214	851;215	P52294;O15131;O60684	KPNA1;KPNA5;KPNA6	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-6;Importin subunit alpha-7	no	no	0	0	0	12	0												1					16.212	16.212	3	0.0036627	10765	DP690-12	77.062	46.727			0.89086	1.0706	NaN	1	0	Median	25661000	14599000	11063000	9639	851;215	9081	19004	46314;46315;46316;46317	46316		4	9606
LVEQLKEER	1	1	Unmodified	1142.6295	0.62953741	309	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	1	11.8	1.64									1			1	2				10.944	10.944	3	0.0012006	3458	DP690-12	122.28	68.525			0.90445	1.0855	3.9304	2	0	Median	14339000	8266700	6072600	9640	309	9082	19005;19006;19007;19008	46318;46319;46320;46321;46322;46323;46324	46318		7	9606
LVESLPQEIK	1	0	Unmodified	1154.6547	0.65468953	862	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	0	0	16	0																1	15.581	15.581	2	8.7552E-05	9299	DP690-16	159.28	126.38			0.82119	0.95112	NaN	1	0	Median	28283000	15399000	12885000	9641	862	9083	19009	46325;46326;46327;46328	46327		4	9606
LVEVKPSLVIDYLK	2	0	Unmodified	1614.9596	0.95964532	1391	Q460N5	PARP14	Poly [ADP-ribose] polymerase 14	yes	yes	0	0	1	10	0										1							19.526	19.526	3	0.0017308	15915	DP690-10	127.3	92.292			NaN	NaN	NaN	0	0	Median	5610900	5610900	0	9642	1391	9084	19010	46329;46330	46329		2	9606
LVEVNGVNVEGETHHQVVQR	0	1	Unmodified	2242.1454	0.14544204	1339	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	yes	yes	0	0	0	14	0														3			13.362	13.362	3;4	2.226E-05	6562	DP690-14	118.72	101.97			0.53034	0.6183	NaN	1	0	Median	170320000	105820000	64496000	9643	1339	9085	19011;19012;19013	46331;46332;46333;46334;46335;46336	46331		6	9606
LVGAIVYYDGQHNDAR	0	1	Unmodified	1789.8747	0.87474649	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	11	0											1						15.098	15.098	3	0.023977	9615	DP690-11	67.102	33.332			NaN	NaN	NaN	0	0	Median	40002000	40002000	0	9644	737	9086	19014	46337	46337		1	9606
LVGDFTHDQSISQK	1	0	Unmodified	1573.7736	0.77363546	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										1							13.669	13.669	3	9.9153E-05	7575	DP690-10	112.44	76.663			0.78424	0.95053	NaN	1	0	Median	191910000	107980000	83932000	9645	1783	9087	19015	46338;46339	46338		2	9606
LVGDVDFEGVR	0	1	Unmodified	1204.6088	0.60880197	486	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	yes	0	0	0	14	0														1			17.133	17.133	2	0.0006058	11873	DP690-14	110.14	72.66			0.86826	1.0454	NaN	1	0	Median	71363000	39635000	31727000	9646	486	9088	19016	46340;46341	46340		2	9606
LVGEEGFVVTEAGFGADIGMEK	1	0	Oxidation (M)	2270.0777	0.077664559	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	1	0	11	0											2						20.676	20.676	2	0.0027753	17595	DP690-11	77.24	64.501			0.68016	0.83973	NaN	1	0	Median	13702000	7770000	5932200	9647	1504	9089	19017;19018	46342;46343	46342	2187	2	9606
LVGPEGFVVTEAGFGADIGMEK	1	0	Oxidation (M)	2238.0878	0.087835314	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	1	0	7	4			1								1						21.271	21.271	2	3.4797E-23	18278	DP690-11	204.67	204.67			0.8867	0.99982	8.5912	2	0	Median	71389000	39957000	31431000	9648	470	9090	19019;19020	46344;46345;46346;46347;46348;46349;46350;46351	46344	566	8	9606
LVGPEGFVVTEAGFGADIGMEK	1	0	Unmodified	2222.0929	0.092920692	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	11	0											1						22.035	22.035	2	3.9884E-29	19316	DP690-11	218.2	192.29			0.95821	1.1562	NaN	1	0	Median	49202000	25138000	24064000	9649	470	9090	19021	46352;46353;46354	46354		3	9606
LVGQGASAVLLDLPNSGGEAQAK	1	0	Unmodified	2194.1594	0.15936077	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	11	4							1								1		19.07	19.07	2	2.2288E-62	13413	DP690-7	317.03	317.03			0.70228	0.79453	5.0706	2	0	Median	36749000	21340000	15409000	9650	1953	9091	19022;19023	46355;46356;46357;46358;46359;46360;46361;46362;46363;46364	46364		10	9606
LVGQSIIAYLQK	1	0	Unmodified	1331.7813	0.78128702	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														20.29	20.29	2	8.7003E-05	15431	DP690-3	131.44	95.928			1.7607	1.8504	NaN	1	0	Median	45948000	17024000	28924000	9651	878	9092	19024	46365;46366;46367;46368;46369	46365		5	9606
LVGSQEELASWGHEYVR	0	1	Unmodified	1958.9486	0.94863972	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	3	0			1														17.222	17.222	3	0.00015296	11599	DP690-3	122.08	93.914			0.84895	0.97286	NaN	1	0	Median	22825000	10298000	12526000	9652	1190	9093	19025	46370;46371;46372;46373	46370		4	9606
LVHPGVAEVVFVK	1	0	Unmodified	1392.8129	0.8129215	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	13	0													1				16.002	16.002	2	0.00062423	10159	DP690-13	126.39	126.39			0.77771	0.89933	NaN	1	0	Median	55463000	32346000	23116000	9653	2045	9094	19026	46374	46374		1	9606
LVIITAGAR	0	1	Unmodified	912.57565	0.57565135	352	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	6	0						1											14.855	14.855	2	0.017252	7996	DP690-6	82.241	32.882			1.228	1.4104	NaN	1	0	Median	10628000	4338500	6289600	9654	352	9095	19027	46375	46375		1	9606
LVILANNCPALR	0	1	Unmodified	1352.7598	0.75984008	1002	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	12	4								1								1	16.99	16.99	2	3.5115E-05	11005	DP690-16	185.84	156.36			0.9042	1.0098	0.30054	2	0	Median	213030000	108230000	104800000	9655	1002	9096	19028;19029	46376;46377;46378;46379;46380;46381	46377		6	9606
LVINGNPITIFQER	0	1	Unmodified	1612.8937	0.89369102	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	6	0						1											20.697	20.697	2	2.0162E-06	14808	DP690-6	189.17	166.14			1.43	1.6118	NaN	1	0	Median	21086000	8886000	12200000	9656	371	9097	19030	46382;46383;46384;46385;46386	46383		5	9606
LVINGNPITIFQERDPSK	1	1	Unmodified	2040.1004	0.10038933	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	1	8.67	3.77						2								1			19.043	19.043	3	2.0725E-05	14320	DP690-14	124.04	124.04			0.81845	0.97049	NaN	1	0	Median	105850000	60582000	45267000	9657	371	9098	19031;19032;19033	46387;46388;46389;46390;46391;46392;46393;46394	46388		8	9606
LVINTEEVFRPYAK	1	1	Unmodified	1677.909	0.90900673	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	7	3.56		1							1	1							17.547	17.547	3	1.2611E-06	11761	DP690-9	185.25	157.48			0.69534	0.8055	8.2961	3	0	Plateau	1078500000	625080000	453400000	9658	1046	9099	19034;19035;19036	46395;46396;46397;46398;46399;46400;46401;46402;46403;46404;46405	46402		11	9606
LVLADLLEPVK	1	0	Unmodified	1208.738	0.73802523	2020	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	11	0											2						21.942	21.942	2	0.0058407	19139	DP690-11	116.3	68.481			NaN	NaN	NaN	0	0	Median	0	0	0	9659	2020	9100	19037;19038	46406;46407	46406		2	9606
LVLDAFALPLTNLFK	1	0	Unmodified	1673.9756	0.97562974	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														26.088	26.088	2	0.0046897	21536	DP690-3	78.342	78.342			0.99869	1.0306	NaN	1	0	Median	796280	367270	429010	9660	892	9101	19039	46408;46409;46410;46411	46410		4	9606
LVLDPYLLK	1	0	Unmodified	1072.6532	0.65323296	2444	Q9Y2R5	MRPS17	28S ribosomal protein S17, mitochondrial	yes	yes	0	0	0	16	0																1	19.746	19.746	2	0.0024426	14389	DP690-16	110.12	68.691			0.90151	1.0341	NaN	1	0	Median	35534000	18063000	17471000	9661	2444	9102	19040	46412;46413;46414;46415	46412		4	9606
LVLDSIIWAFK	1	0	Unmodified	1303.754	0.75400964	128	O14980	XPO1	Exportin-1	yes	yes	0	0	0	11	0											1						24.045	24.045	2	0.075794	21750	DP690-11	82.287	50.865			NaN	NaN	NaN	0	0	Median	3175600	3175600	0	9662	128	9103	19041	46416	46416		1	9606
LVLEQVVTSIASVADTAEEK	1	0	Unmodified	2101.1154	0.11543027	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	7	4			1								1						24.777	24.777	2	1.0328E-38	20435	DP690-3	229.23	170.96			0.68713	0.83486	NaN	1	0	Median	7339700	3503800	3835900	9663	82	9104	19042;19043	46417;46418;46419;46420	46420		4	9606
LVLIGSNHSLPFLK	1	0	Unmodified	1536.9028	0.90279914	131	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	2	0		1															19.025	19.025	3	0.034852	12480	DP690-2	51.875	33.696			NaN	NaN	NaN	0	0	Median	2091300	518090	1573200	9664	131	9105	19044	46421	46421		1	9606
LVLPPPDPLDLPLR	0	1	Unmodified	1553.9181	0.91811486	1335	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	10	0										1							21.729	21.729	2	0.0015035	19130	DP690-10	93.821	84.175			0.35621	0.44617	NaN	1	0	Median	13971000	10230000	3740900	9665	1335	9106	19045	46422;46423	46423		2	9606
LVLPSLLAALEEESWR	0	1	Unmodified	1824.9986	0.99855002	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							25.384	25.384	2	5.3419E-06	23500	DP690-10	133.32	133.32			0.93875	1.1412	NaN	1	0	Median	4163800	2278400	1885400	9666	1782	9107	19046	46424;46425;46426;46427	46425		4	9606
LVLVGDGGTGK	1	0	Unmodified	1014.571	0.5709599	991	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	11	4							1								1		14.039	14.039	2	7.7006E-05	7205	DP690-7	140.83	9.7733			1.0341	1.1262	14.644	2	0	Median	212620000	110290000	102330000	9667	991	9108	19047;19048	46428;46429;46430;46431;46432;46433;46434;46435;46436	46436		9	9606
LVMEEAPESYK	1	0	Oxidation (M)	1310.6064	0.60641871	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	1	0	12	0												1					12.719	12.719	2	0.00016266	5737	DP690-12	158.76	106.5			0.75465	0.86204	NaN	1	0	Median	138930000	78393000	60536000	9668	2475	9109	19049	46437;46438;46439;46440	46438	2917	4	9606
LVMEEAPESYK	1	0	Unmodified	1294.6115	0.61150408	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	12	0												1					14.535	14.535	2	7.9109E-05	8336	DP690-12	164.46	110.49			0.75787	0.87485	NaN	1	0	Median	118160000	58112000	60050000	9669	2475	9109	19050	46441;46442;46443;46444	46441		4	9606
LVMEEAPESYKNVTDVVNTCHDAGISK	2	0	Oxidation (M)	3021.406	0.40595134	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	1	1	12	0												1					15.682	15.682	4	0.01449	10021	DP690-12	41.703	35.474			0.9756	1.1293	NaN	1	0	Median	39733000	21417000	18316000	9670	2475	9110	19051	46445	46445	2917	1	9606
LVNACLAEELPHIHAFEQK	1	0	Unmodified	2218.1205	0.12047285	2109	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	0	0	0	8	0								2									17.74	17.74	3;4	2.0791E-05	11152	DP690-8	122.46	101.46			0.7464	0.83396	0.071248	2	0	Median	44223000	24179000	20044000	9671	2109	9111	19052;19053	46446;46447;46448;46449;46450;46451;46452;46453	46450		8	9606
LVNASVAFYK	1	0	Unmodified	1110.6073	0.6073454	283	O75962;O60229	TRIO;KALRN	Triple functional domain protein;Kalirin	yes	no	0	0	0	2	0		1															15.922	15.922	2	0.033284	8836	DP690-2	69.812	17.863			1.061	1.0604	NaN	1	0	Median	4130200	1962200	2168000	9672	283	9112	19054	46454	46454		1	9606
LVNCEPIGTQASK	1	0	Unmodified	1415.7079	0.70786408	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9	0									1								12.458	12.458	2	9.5458E-05	5119	DP690-9	136.96	96.9			0.78231	0.98216	NaN	1	0	Median	5826000	3015700	2810300	9673	1102	9113	19055	46455;46456;46457	46455		3	9606
LVNELTEFAK	1	0	Unmodified	1162.6234	0.6233894	37	CON__P02769			yes	yes	0	0	0	3	0.816		1	1	1													17.398	17.398	2	3.4935E-10	10550	DP690-2	181.55	119.44		+	NaN	NaN	NaN	0	0	Median	106810000	106810000	0	9674	37	9114	19056;19057;19058	46458;46459;46460;46461;46462;46463	46459		6	
LVNHFVEEFK	1	0	Unmodified	1260.6503	0.65027285	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	12	0												1					15.11	15.11	3	0.0044991	9189	DP690-12	79.201	60.867			0.86738	1.0189	NaN	1	0	Median	90272000	46589000	43683000	9675	449	9115	19059	46464;46465;46466;46467	46464		4	9606
LVNHFVEEFKR	1	1	Unmodified	1416.7514	0.75138388	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	12	0												1					13.786	13.786	3	0.0031964	7335	DP690-12	85.963	49.546			0.72056	0.85766	NaN	1	0	Median	82391000	42868000	39523000	9676	449	9116	19060	46468;46469	46469		2	9606
LVNLYGLLHGLQAAVAQQDTLMEAR	0	1	Unmodified	2723.4429	0.44286962	1800	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	11	0											1						25.046	25.046	3	0.01915	22948	DP690-11	43.091	24.844			1.0886	1.325	NaN	1	0	Median	4630600	1841500	2789200	9677	1800	9117	19061	46470	46470		1	9606
LVNQQLLADPLVPPQLTIK	1	0	Unmodified	2099.2354	0.23542625	607	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	11	0											1						21.547	21.547	2	0.0009233	18693	DP690-11	119.17	44.066			NaN	NaN	NaN	0	0	Median	6509000	6509000	0	9678	607	9118	19062	46471	46471		1	9606
LVNTPYVDNSYK	1	0	Unmodified	1411.6983	0.69834526	1058	P83111	LACTB	Serine beta-lactamase-like protein LACTB, mitochondrial	yes	yes	0	0	0	12	0												1					14.599	14.599	2	0.00047251	8433	DP690-12	112.85	71.852			0.69933	0.83405	NaN	1	0	Median	60293000	39874000	20419000	9679	1058	9119	19063	46472;46473	46473		2	9606
LVNTTITPEPEPKPQPNSR	1	1	Unmodified	2117.1117	0.1116823	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	1	11	0											1						12.882	12.882	3	6.7317E-07	6228	DP690-11	137.81	115.27			0.49976	0.5932	NaN	1	0	Median	80546000	44632000	35913000	9680	1573	9120	19064	46474;46475;46476	46474		3	9606
LVPDLLAIVQR	0	1	Unmodified	1235.7602	0.76015765	2122	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	9.5	0.5									1	1							21.754	21.754	2	0.00067731	19119	DP690-10	109.48	66.036			0.68188	0.82553	39.19	2	0	Median	40299000	21092000	19207000	9681	2122	9121	19065;19066	46477;46478;46479;46480;46481	46478		5	9606
LVPEAVGDQK	1	0	Unmodified	1054.5659	0.56587452	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														12.121	12.121	2	0.0030435	4832	DP690-3	95.358	55.712			0.888	0.92639	NaN	1	0	Median	61138000	32716000	28422000	9682	797	9122	19067	46482;46483;46484;46485	46485		4	9606
LVPFLDALK	1	0	Unmodified	1014.6114	0.61136815	1496	Q6P9B9	INTS5	Integrator complex subunit 5	yes	yes	0	0	0	11	0											1						21.171	21.171	2	0.037469	18113	DP690-11	71.379	35.194			0.70569	0.86922	NaN	1	0	Median	18454000	12271000	6183600	9683	1496	9123	19068	46486;46487;46488	46486		3	9606
LVPGGGATEIELAK	1	0	Unmodified	1353.7504	0.75038083	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	4	0				1													15.891	15.891	2	0.00032019	9703	DP690-4	110.84	70.123			1.9141	2.0518	NaN	1	0	Median	43494000	14575000	28919000	9684	826	9124	19069	46489;46490;46491;46492	46490		4	9606
LVPLLLEDGGEAPAALEAALEEK	1	0	Unmodified	2347.2523	0.25225811	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								23.9	23.9	2	1.1742E-06	19443	DP690-9	140.96	101.56			1.1486	1.3869	NaN	1	0	Median	2225800	1065500	1160300	9685	1264	9125	19070	46493;46494;46495;46496;46497	46496		5	9606
LVPLNQESVEER	0	1	Unmodified	1411.7307	0.73070802	1643	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	11	0											1						14.558	14.558	2	0.00018184	8677	DP690-11	151.83	98.499			NaN	NaN	NaN	0	0	Median	46238000	46238000	0	9686	1643	9126	19071	46498	46498		1	9606
LVPMAAHEASSLYSEEK	1	0	Oxidation (M)	1876.8877	0.88767894	2114	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	1	0	2	0		1															14.239	14.239	3	0.0003525	6800	DP690-2	94.385	94.385			0.96278	0.96717	NaN	1	0	Median	6771700	3594900	3176800	9687	2114	9127	19072	46499;46500	46500	2618	2	9606
LVPPECHCVR	0	1	Unmodified	1265.6009	0.60089659	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	11	0											1						10.666	10.666	3	0.061039	3096	DP690-11	71.349	38.826			NaN	NaN	NaN	0	0	Median	91760000	91760000	0	9688	1068	9128	19073	46501	46501		1	9606
LVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGER	0	2	Unmodified	3067.394	0.39395818	343	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	1	9	0									1								10.199	10.199	4	4.1323E-06	2382	DP690-9	73.164	59.916			0.75702	0.82058	NaN	1	0	Median	9331700	5081100	4250600	9689	343	9129	19074	46502;46503;46504;46505	46504		4	9606
LVPSQEETKLSVEESEAAGDGVDTK	2	0	Unmodified	2617.2607	0.26065054	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	1	3	0			2														15.522	15.522	3	2.827E-05	9379	DP690-3	113.31	88.104			NaN	NaN	NaN	0	0	Median	2753300	0	2753300	9690	788	9130	19075;19076	46506;46507	46506		2	9606
LVPSVNGVR	0	1	Unmodified	939.55016	0.55016488	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	9	3.1			1						1		3						13.341	13.341	2	0.0039317	7015	DP690-11	128.57	73.78			0.74864	0.88559	22.14	2	0	Median	215040000	195440000	19592000	9691	470	9131	19077;19078;19079;19080;19081	46508;46509;46510;46511;46512;46513;46514;46515	46509		8	9606
LVPVGYGIK	1	0	Unmodified	944.5695	0.56950333	575	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	15	0															1		15.225	15.225	2	0.020349	8913	DP690-15	79.116	28.989			0.88266	0.93686	NaN	1	0	Median	400830000	210930000	189900000	9692	575	9132	19082	46516;46517	46516		2	9606
LVPVLYHVYSFR	0	1	Unmodified	1491.8238	0.82382054	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	11	0											1						18.435	18.435	3	2.7941E-05	14351	DP690-11	131.12	119.66			0.76222	0.91484	NaN	1	0	Median	62963000	35877000	27086000	9693	83	9133	19083	46518;46519;46520;46521	46519		4	9606
LVQAFQFTDK	1	0	Unmodified	1195.6237	0.62372375	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	12.3	3.93						1	5	1						1	9	3	20.217	20.217	2	6.0075E-05	10650	DP690-7	168.26	113.48			0.89862	0.92068	17.559	8	0	Median	8496299999.999999	4362000000	4134299999.9999995	9694	1128	9134	19084;19085;19086;19087;19088;19089;19090;19091;19092;19093;19094;19095;19096;19097;19098;19099;19100;19101;19102;19103	46522;46523;46524;46525;46526;46527;46528;46529;46530;46531;46532;46533;46534;46535;46536;46537;46538;46539;46540;46541;46542;46543;46544;46545;46546;46547;46548;46549;46550;46551;46552;46553;46554;46555;46556;46557;46558;46559;46560;46561;46562;46563;46564	46552		43	9606
LVQASEELLR	0	1	Unmodified	1156.6452	0.64518747	1191	Q13232	NME3	Nucleoside diphosphate kinase 3	yes	yes	0	0	0	12	4								1								1	15.493	15.493	2	0.00076441	9220	DP690-16	111.06	69.408			0.91579	1.0883	4.7821	2	0	Median	21270000	11331000	9939300	9695	1191	9135	19104;19105	46565;46566;46567;46568;46569	46565		5	9606
LVQDTPFLTGHGR	0	1	Unmodified	1439.7521	0.75211216	1894	Q96LW7	C9orf89	Bcl10-interacting CARD protein	yes	yes	0	0	0	16	0																1	14.404	14.404	3	0.00086266	7755	DP690-16	91.093	91.093			0.69014	0.77106	NaN	1	0	Median	66625000	39499000	27126000	9696	1894	9136	19106	46570;46571	46570		2	9606
LVQDVANNTNEEAGDGTTTATVLAR	0	1	Unmodified	2559.2413	0.2412525	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	8	4				1								1					15.924	15.924	2	7.6372E-76	10388	DP690-12	328.34	295.11			0.9952	1.1649	28.482	2	0	Median	92415000	50373000	42042000	9697	461	9137	19107;19108	46572;46573;46574;46575;46576;46577;46578;46579;46580;46581;46582;46583	46574		12	9606
LVQDYGLESEVAQHLAATYGDK	1	0	Unmodified	2406.1703	0.17031939	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	11	0											1						20.019	20.019	3	4.1015E-20	16611	DP690-11	192.25	148.92			0.73444	0.84137	NaN	1	0	Median	174810000	86633000	88177000	9698	737	9138	19109	46584;46585;46586;46587	46584		4	9606
LVQFDSGKLEALAILLQK	2	0	Unmodified	1985.1561	0.1561133	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	1	9.5	0.5									1	1							22.437	22.437	3	8.5363E-10	19994	DP690-10	145.04	137.52			0.82597	0.98721	11.436	2	0	Median	15016000	7641500	7374800	9699	1891	9139	19110;19111	46588;46589;46590;46591;46592	46589		5	9606
LVQHDLQVAK	1	0	Unmodified	1149.6506	0.6506072	1603	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	yes	yes	0	0	0	14	0														3			10.742	10.742	2;3	0.017711	3100	DP690-14	159.79	111.92			1.4215	1.6865	NaN	1	0	Median	19058000	10280000	8778200	9700	1603	9140	19112;19113;19114	46593;46594;46595	46595		2	9606
LVQNGTEPSSLPFLDPNARPLVPEVSIK	1	1	Unmodified	3016.6233	0.6233364	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	1	2	0		2															20.92	20.92	3	0.00057573	14558	DP690-2	88.627	67.605			NaN	NaN	NaN	0	0	Median	0	0	0	9701	602	9141	19115;19116	46596;46597	46597		2	9606
LVQNLFAEGNDLFR	0	1	Unmodified	1634.8417	0.84165545	2337	Q9UGR2	ZC3H7B	Zinc finger CCCH domain-containing protein 7B	yes	yes	0	0	0	11	0											1						21.268	21.268	2	0.0024468	18378	DP690-11	90.05	50.035			0.78393	0.94285	NaN	1	0	Median	25391000	15085000	10306000	9702	2337	9142	19117	46598	46598		1	9606
LVQSPNSYFMDVK	1	0	Oxidation (M)	1542.7388	0.73882986	729;1522	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	no	no	0	1	0	13	3.69								1	1							3	16.857	16.857	2	0.00012071	9789	DP690-8	133.91	94.29			0.85316	1.0102	15.363	4	0	Median	817370000	433630000	383740000	9703	729;1522	9143	19118;19119;19120;19121;19122	46599;46600;46601;46602;46603;46604;46605;46606;46607;46608;46609;46610;46611;46612;46613;46614	46608	1076	16	9606
LVQSPNSYFMDVK	1	0	Unmodified	1526.7439	0.74391524	729;1522	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	no	no	0	0	0	16	0																1	17.677	17.677	2	0.00010221	11865	DP690-16	149.96	91.526			0.87059	0.98387	NaN	1	0	Median	50418000	27319000	23099000	9704	729;1522	9143	19123	46615;46616;46617	46615		3	9606
LVQTPLTDR	0	1	Unmodified	1041.5819	0.58185893	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								13.948	13.948	2	0.0045213	7088	DP690-9	101.72	16.806			0.87235	1.0487	NaN	1	0	Median	35051000	17243000	17808000	9705	1264	9144	19124	46618;46619	46619		2	9606
LVRPPVQVYGIEGR	0	2	Unmodified	1581.8991	0.89911075	773	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	1	15.3	0.471															2	1	15.583	15.583	2;3	1.2007E-05	9323	DP690-16	126.56	115.28			0.6214	0.67409	7.4717	3	0	Median	182330000	104130000	78197000	9706	773	9145	19125;19126;19127	46620;46621;46622;46623;46624;46625;46626;46627;46628;46629	46627		10	9606
LVSDIIDPVALEIPLSK	1	0	Unmodified	1821.0499	0.049916891	1446	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	10	0										1							23.012	23.012	2	0.00038182	20581	DP690-10	107.53	98.708			0.44888	0.53955	NaN	1	0	Median	4167400	2204800	1962500	9707	1446	9146	19128	46630;46631	46630		2	9606
LVSDSLSEHEK	1	0	Unmodified	1242.6092	0.6091959	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	11	0											1						11.041	11.041	3	0.00046948	3600	DP690-11	103.43	87.49			0.84422	1.0126	NaN	1	0	Median	96302000	53563000	42739000	9708	1889	9147	19129	46632;46633;46634;46635;46636	46634		5	9606
LVSDTITQKVEEIDAAILR	1	1	Unmodified	2113.163	0.16304917	1102	Q03001	DST	Dystonin	yes	yes	0	0	1	9.67	0.471									1	2							22.554	22.554	3	3.4928E-05	17840	DP690-9	120.24	102.95			0.69088	0.80129	NaN	1	0	Median	8207600	1307800	6899800	9709	1102	9148	19130;19131;19132	46637;46638;46639;46640	46640		4	9606
LVSEKVDDYEHAAK	2	0	Unmodified	1602.789	0.78895118	162	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	1	9.33	3.77				1								2					11.97	11.97	3;4	0.0015277	4828	DP690-12	81.789	81.789			0.87097	1.0008	29.116	3	0	Median	114090000	52444000	61647000	9710	162	9149	19133;19134;19135	46641;46642;46643;46644	46643		4	9606
LVSESSDVLPK	1	0	Unmodified	1172.6289	0.62886871	38	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	12.5	0.5												1	1				14.25	14.25	2	0.036083	7534	DP690-13	66.962	34.15		+	0.80053	0.9287	16.503	2	0	Median	195530000	105820000	89709000	9711	38	9150	19136;19137	46645;46646;46647	46647		3	9606
LVSIPELLSAVK	1	0	Unmodified	1267.7751	0.77513901	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	5	3.56		1	1							1							22.627	22.627	2	3.9906E-05	18196	DP690-3	127.76	106.08			0.84759	0.94625	6.5595	3	0	Plateau	13679000	7870200	5808700	9712	2418	9151	19138;19139;19140	46648;46649;46650;46651;46652;46653;46654	46654		7	9606
LVSIVADQLEK	1	0	Unmodified	1213.6918	0.69180331	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	7	4			1								1						17.049	17.049	2	0.047212	11329	DP690-3	88.681	42.224			0.77912	0.94452	NaN	1	0	Median	71326000	40134000	31192000	9713	149	9152	19141;19142	46655;46656	46656		2	9606
LVSLASEVQDLHLAQR	0	1	Unmodified	1777.9686	0.96864688	1900	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	9.5	0.5									1	1							18.744	18.744	3	1.0937E-17	14973	DP690-10	214.61	194.52			0.80878	0.97653	18.37	2	0	Median	199640000	105530000	94114000	9714	1900	9153	19143;19144	46657;46658;46659;46660;46661;46662;46663;46664	46658		8	9606
LVSLGTCFGK	1	0	Unmodified	1080.5638	0.56376603	2425	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	0	0	16	0																1	16.416	16.416	2	0.00016724	10367	DP690-16	132.76	84.197			0.98152	1.1478	NaN	1	0	Median	21443000	10936000	10507000	9715	2425	9154	19145	46665;46666;46667;46668	46668		4	9606
LVSNHSLHETSSVFVDSLTK	1	0	Unmodified	2199.1172	0.11716161	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.14	3.18		1							2	2	1		1				15.918	15.918	3;4	5.3073E-18	10809	DP690-10	203.17	186.5			0.87343	0.93944	12.495	7	0	Median	5188400000	2868000000	2320400000	9716	549	9155	19146;19147;19148;19149;19150;19151;19152	46669;46670;46671;46672;46673;46674;46675;46676;46677;46678;46679;46680;46681;46682;46683;46684;46685;46686;46687;46688;46689;46690;46691;46692;46693;46694;46695;46696	46675		28	9606
LVSPETEASEESLQFNLEKPATGER	1	1	Unmodified	2760.3454	0.34538322	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	1	10	0										1							17.684	17.684	3	1.6175000000000001E-31	13328	DP690-10	205.55	205.55			0.61831	0.74496	NaN	1	0	Median	147280000	82930000	64353000	9717	1167	9156	19153	46697;46698;46699;46700	46697		4	9606
LVSPGSANETSSILVESVTR	0	1	Unmodified	2045.0641	0.064063405	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	8.6	3.38		1							1	1	2						18.907	18.907	2	3.5923E-32	15099	DP690-10	260.73	260.73			0.78668	0.85122	4.99	2	0	Median	373860000	214550000	159320000	9718	250	9157	19154;19155;19156;19157;19158	46701;46702;46703;46704;46705;46706;46707;46708;46709;46710;46711;46712;46713;46714	46702		14	9606
LVSQDNFGFDLPAVEAATK	1	0	Unmodified	2021.0106	0.010571271	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							21.19	21.19	2	2.1582000000000003E-30	18306	DP690-10	245.4	214.05			0.71741	0.88204	NaN	1	0	Median	47853000	24317000	23536000	9719	1080	9158	19159	46715;46716;46717	46715		3	9606
LVSSDPEINTK	1	0	Unmodified	1201.619	0.6190323	2432	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	5.33	0.471					2	1											12.263	12.263	2	0.00045511	4785	DP690-6	114.97	84.282			1.0498	1.1078	19.886	2	0	Median	50672000	26508000	24163000	9720	2432	9159	19160;19161;19162	46718;46719;46720;46721;46722;46723;46724	46724		7	9606
LVSSPCCIVTSTYGWTANMER	0	1	Unmodified	2431.097	0.097036567	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	11	0											1						20.517	20.517	2	0.022032	17267	DP690-11	92.265	62.353			NaN	NaN	NaN	0	0	Median	0	0	0	9721	416	9160	19163	46725	46725		1	9606
LVSSPCCIVTSTYGWTANMER	0	1	Oxidation (M)	2447.092	0.091951189	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	3	0			1														19.141	19.141	2	1.53E-14	14136	DP690-3	168.67	158.21			0.96094	1.0923	NaN	1	0	Median	11549000	5990700	5558400	9722	416	9160	19164	46726;46727;46728;46729;46730;46731	46730	465	6	9606
LVTCTGYHQVR	0	1	Unmodified	1332.6609	0.66085431	1502	Q6RFH5	WDR74	WD repeat-containing protein 74	yes	yes	0	0	0	14	0														1			10.631	10.631	3	0.00069967	2986	DP690-14	97.597	77.134			1.2597	1.5276	NaN	1	0	Median	22369000	10269000	12100000	9723	1502	9161	19165	46732;46733	46732		2	9606
LVTDCVAAMNPDAVLR	0	1	Oxidation (M)	1759.8597	0.85969005	344	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	1	0	6	0						1											16.719	16.719	2	0.015653	10216	DP690-6	94.402	61.543			NaN	NaN	NaN	0	0	Median	1251900	1251900	0	9724	344	9162	19166	46734;46735	46734	354	2	9606
LVTDLTK	1	0	Unmodified	788.46437	0.46436956	37	CON__P02769			no	no	0	0	0	2	0.816	1	1	1														12.944	12.944	2	0.024611	4673	DP690-1	118.69	21.046		+	NaN	NaN	NaN	0	0	Median	9501200	9501200	0	9725	37	9163	19167;19168;19169	46736;46737;46738;46739	46736		4	
LVTDPDSGLCSHYWGAIIR	0	1	Unmodified	2159.047	0.046973553	895	P55196	MLLT4	Afadin	yes	yes	0	0	0	10	0										1							18.924	18.924	3	0.01387	15284	DP690-10	115.73	82.104			NaN	NaN	NaN	0	0	Median	20104000	20104000	0	9726	895	9164	19170	46740	46740		1	9606
LVTEMGTYATQSALSSSR	0	1	Oxidation (M)	1916.915	0.91495633	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	0	3	0			1														14.685	14.685	2	8.7492E-09	8254	DP690-3	172.57	137.67			NaN	NaN	NaN	0	0	Median	3188700	0	3188700	9727	877	9165	19171	46741;46742	46741	1329	2	9606
LVTEMGTYATQSALSSSRPTK	1	1	Oxidation (M)	2243.1104	0.11036167	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	1	7	4			1								1						13.646	13.646	3	3.6835E-15	7422	DP690-11	167.9	144.1			0.83856	0.98755	NaN	1	0	Median	90138000	43546000	46592000	9728	877	9166	19172;19173	46743;46744;46745	46743	1329	3	9606
LVTEMGTYATQSALSSSRPTKK	2	1	Oxidation (M)	2371.2053	0.20532469	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	2	3	0			1														12.557	12.557	4	0.001832	5312	DP690-3	68.639	42.836			3.0395	3.129	NaN	1	0	Median	8331000	1704300	6626700	9729	877	9167	19174	46746;46747	46746	1329	2	9606
LVTLPDITSVAK	1	0	Unmodified	1255.7388	0.73875351	1858	Q96GA7	SDSL	Serine dehydratase-like	yes	yes	0	0	0	6	0						1											19.074	19.074	2	0.0029836	13024	DP690-6	90.827	69.925			0.63023	0.6996	NaN	1	0	Median	2909300	1733100	1176200	9730	1858	9168	19175	46748;46749;46750	46750		3	9606
LVTSGAESGNLNTSPSSNQTR	0	1	Unmodified	2119.0142	0.014153099	1705	Q8NHV4	NEDD1	Protein NEDD1	yes	yes	0	0	0	11	0											2						12.84	12.84	2	1.4672E-45	6204	DP690-11	260.96	213.9			NaN	NaN	NaN	0	0	Median	0	0	0	9731	1705	9169	19176;19177	46751;46752	46752		2	9606
LVTSIGDVVNHDPVVGDR	0	1	Unmodified	1890.9799	0.97993984	467	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	3	0			1														16.95	16.95	3	0.0053975	11261	DP690-3	72.932	52.841			0.83997	0.96742	NaN	1	0	Median	17997000	9802900	8194100	9732	467	9170	19178	46753	46753		1	9606
LVVDSHVQYR	0	1	Unmodified	1214.6408	0.6407708	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							12.638	12.638	3	0.0024279	6099	DP690-10	109.44	56.35			0.82948	1.0252	NaN	1	0	Median	117330000	66022000	51306000	9733	1492	9171	19179	46754	46754		1	9606
LVVLDYIIR	0	1	Unmodified	1102.675	0.67503104	2003	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	13	0													1				21.239	21.239	2	0.014453	17080	DP690-13	85.064	85.064			0.89691	1.0885	NaN	1	0	Median	10008000	5304200	4704200	9734	2003	9172	19180	46755;46756	46756		2	9606
LVVLGSGGVGK	1	0	Unmodified	984.59678	0.59678072	944	P61224;P62834	RAP1B;RAP1A	Ras-related protein Rap-1b;Ras-related protein Rap-1A	yes	no	0	0	0	15	0															1		14.621	14.621	2	0.00031018	8194	DP690-15	119.62	64.505			0.8922	1.0079	NaN	1	0	Median	87336000	45713000	41623000	9735	944	9173	19181	46757;46758;46759;46760	46758		4	9606
LVVNFESDKLK	2	0	Unmodified	1290.7184	0.71835242	556	P21980	TGM2	Protein-glutamine gamma-glutamyltransferase 2	yes	yes	0	0	1	3	0			1														15.241	15.241	3	0.065961	8976	DP690-3	37.144	22.365			1.6717	1.8053	NaN	1	0	Median	23502000	7554300	15947000	9736	556	9174	19182	46761;46762	46761		2	9606
LVVPASQCGSLIGK	1	0	Unmodified	1427.7806	0.7806351	1326	Q15366;P57721	PCBP2;PCBP3	Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	yes	no	0	0	0	12.8	3.54						1							1	1	1	1	15.982	15.982	2	1.7047E-05	9216	DP690-6	127.51	127.51			0.92241	0.98145	15.093	5	0	Median	1614499999.9999998	835530000	779020000	9737	1326	9175	19183;19184;19185;19186;19187	46763;46764;46765;46766;46767;46768;46769;46770;46771;46772;46773;46774;46775;46776;46777	46775		15	9606
LVVPATQCGSLIGK	1	0	Unmodified	1441.7963	0.79628516	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	10	3.74						1	1	1						1	1		16.347	16.347	2	1.8833E-05	10623	DP690-14	135.99	45.936			0.76561	0.83215	12.493	5	0	Median	1841899999.9999998	978120000	863800000	9738	1325	9176	19188;19189;19190;19191;19192	46778;46779;46780;46781;46782;46783;46784;46785;46786;46787;46788;46789;46790;46791;46792;46793;46794	46779		17	9606
LVVVDENDVVK	1	0	Unmodified	1227.6711	0.67106787	887	P54619	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1	yes	yes	0	0	0	6	0						1											15.576	15.576	2	0.0013631	8809	DP690-6	103.55	80.227			1.0013	1.1481	NaN	1	0	Median	10275000	5210500	5064800	9739	887	9177	19193	46795;46796	46795		2	9606
LVVVGGGGVGK	1	0	Unmodified	940.57057	0.57056597	961	P62070;P10301	RRAS2;RRAS	Ras-related protein R-Ras2;Ras-related protein R-Ras	yes	no	0	0	0	15	0															1		13.196	13.196	2	0.00133	6243	DP690-15	103.83	85.509			0.76653	0.89029	NaN	1	0	Median	44282000	25060000	19222000	9740	961	9178	19194	46797;46798;46799;46800	46797		4	9606
LVVVSVSPQSR	0	1	Unmodified	1169.6768	0.67682195	2126	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	4	0				1													14.513	14.513	2	0.0024311	7907	DP690-4	94.309	50.675			0.82721	0.95429	NaN	1	0	Median	18291000	10108000	8183100	9741	2126	9179	19195	46801;46802	46802		2	9606
LVYFQGTK	1	0	Unmodified	954.51747	0.51746776	1564	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	3	0			1														14.388	14.388	2	0.013387	7824	DP690-3	116.9	74.13			NaN	NaN	NaN	0	0	Median	13859000	0	13859000	9742	1564	9180	19196	46803;46804	46803		2	9606
LVYSTCSLCQEENEDVVR	0	1	Unmodified	2199.9776	0.97763294	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	13	0													1				16.67	16.67	2	6.1068E-37	11061	DP690-13	322.7	290.55			1.1356	1.3947	NaN	1	0	Median	27994000	10412000	17582000	9743	1906	9181	19197	46805;46806;46807;46808;46809	46806		5	9606
LWDLTTGTTTR	0	1	Unmodified	1263.6459	0.64591575	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	10	4						1								1			17.344	17.344	2	1.8979E-06	12145	DP690-14	220.39	163.96			0.88815	1.0066	1.7351	2	0	Median	366560000	193110000	173450000	9744	1022	9182	19198;19199	46810;46811;46812;46813;46814;46815;46816	46812		7	9606
LWEYLLELLR	0	1	Unmodified	1346.7598	0.7598233	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							26.167	26.167	2	0.0082329	24438	DP690-10	86.136	63.606			0.54324	0.64048	NaN	1	0	Median	1942200	1095300	846870	9745	1080	9183	19200	46817;46818	46817		2	9606
LWNEVLASLK	1	0	Unmodified	1171.6601	0.66010926	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	11	0											3						20.451	20.451	2	0.012752	17190	DP690-11	110.76	57.82			0.56453	0.68477	NaN	1	0	Median	41145000	30125000	11020000	9746	1932	9184	19201;19202;19203	46819;46820;46821;46822	46821		4	9606
LWNTLGVCK	1	0	Unmodified	1089.5641	0.56410038	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	14	0														1			16.345	16.345	2	0.0045213	10702	DP690-14	101.72	52.28			0.84601	0.96079	NaN	1	0	Median	333240000	181320000	151920000	9747	1022	9185	19204	46823;46824;46825;46826	46824		4	9606
LWPLGLVLANTAMGVGSFQR	0	1	Unmodified	2129.1456	0.14556539	1866	Q96H55	MYO19	Unconventional myosin-XIX	yes	yes	0	0	0	11	0											1						25.572	25.572	2	0.020021	23522	DP690-11	94.728	61.139			NaN	NaN	NaN	0	0	Median	0	0	0	9748	1866	9186	19205	46827	46827		1	9606
LWQADCSSR	0	1	Unmodified	1121.4924	0.492392	2047	Q9BYB4	GNB1L	Guanine nucleotide-binding protein subunit beta-like protein 1	yes	yes	0	0	0	6	0						1											12.354	12.354	2	0.0016927	4932	DP690-6	118.33	69.274			0.85812	0.97103	NaN	1	0	Median	3889800	2021300	1868500	9749	2047	9187	19206	46828;46829	46829		2	9606
LWVGGLGPWVPLAALAR	0	1	Unmodified	1775.0246	0.024645614	1929	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	11	0											1						24.891	24.891	2	0.011651	22761	DP690-11	113.47	67.12			NaN	NaN	NaN	0	0	Median	0	0	0	9750	1929	9188	19207	46830	46830		1	9606
LYALGLVPTR	0	1	Unmodified	1101.6546	0.65462995	2228	Q9NV31	IMP3	U3 small nucleolar ribonucleoprotein protein IMP3	yes	yes	0	0	0	16	0																1	18.561	18.561	2	0.0023659	12979	DP690-16	99.802	64.446			0.61923	0.72421	NaN	1	0	Median	6245100	3862000	2383100	9751	2228	9189	19208	46831;46832	46831		2	9606
LYAPFYSSDILIASPLGLR	0	1	Unmodified	2095.1354	0.13537785	1461	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	11	0											2						23.811	23.811	2	3.7459E-05	21459	DP690-11	124.47	124.47			0.80505	0.98178	NaN	1	0	Median	4860900	2974100	1886800	9752	1461	9190	19209;19210	46833;46834;46835;46836;46837	46833		5	9606
LYAQDADGCPIDIK	1	0	Unmodified	1577.7396	0.73955814	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	8.33	2.92		1							3	1	1						15.993	15.993	2	1.8833E-05	8924	DP690-2	128.01	53.842			0.89255	1.0487	1.0095	3	0	Median	360970000	192680000	168290000	9753	1270	9191	19211;19212;19213;19214;19215;19216	46838;46839;46840;46841;46842;46843;46844;46845;46846;46847;46848;46849;46850;46851;46852;46853;46854;46855	46852		18	9606
LYDLNHNEIGELIR	0	1	Unmodified	1697.8737	0.87368386	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	9.5	0.5									1	1							18.364	18.364	3	0.00018743	14326	DP690-10	125.97	105.31			0.83702	1.008	5.3066	2	0	Median	324420000	170050000	154370000	9754	269	9192	19217;19218	46856;46857;46858;46859;46860	46856		5	9606
LYDRDVASAAPEK	1	1	Unmodified	1433.7151	0.71505795	2446	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	1	14	0														1			11.599	11.599	3	0.034931	4211	DP690-14	68.171	39.844			0.4895	0.61299	NaN	1	0	Median	14861000	9338600	5522300	9755	2446	9193	19219	46861	46861		1	9606
LYDVPANSMR	0	1	Oxidation (M)	1180.5547	0.55465791	185	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	1	0	14	0														1			12.774	12.774	2	0.052976	5809	DP690-14	70.256	39.182			0.73837	0.85835	NaN	1	0	Median	180440000	106980000	73463000	9756	185	9194	19220	46862	46862		1	9606
LYDVPANSMR	0	1	Unmodified	1164.5597	0.55974328	185	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	14	0														1			14.453	14.453	2	0.00012277	8149	DP690-14	140.14	81.972			0.79668	0.9129	NaN	1	0	Median	240460000	133700000	106760000	9757	185	9194	19221	46863;46864	46864		2	9606
LYDVVAVFPK	1	0	Unmodified	1149.6434	0.64339656	1040	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	15	0															1		19.314	19.314	2	0.0037275	14325	DP690-15	92.439	62.254			0.80167	0.94201	NaN	1	0	Median	33304000	19070000	14234000	9758	1040	9195	19222	46865;46866	46866		2	9606
LYEALTPVH	0	0	Unmodified	1041.5495	0.54949617	2370	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	11	0											1						15.767	15.767	2	0.027963	10547	DP690-11	97.473	48.114			NaN	NaN	NaN	0	0	Median	0	0	0	9759	2370	9196	19223	46867;46868	46867		2	9606
LYFKPIGDPVFAR	1	1	Unmodified	1521.8344	0.83438523	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							18.026	18.026	3	0.0061069	13850	DP690-10	72.705	51.645			0.68487	0.82119	NaN	1	0	Median	158150000	83946000	74200000	9760	13	9197	19224	46869	46869		1	9606
LYFLQCETCHSR	0	1	Unmodified	1612.7126	0.71263189	540	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	13	0													1				15.076	15.076	3	0.0080262	8929	DP690-13	62.338	26.575			1.4571	1.7946	NaN	1	0	Median	22792000	10968000	11824000	9761	540	9198	19225	46870	46870		1	9606
LYFSTCPFR	0	1	Unmodified	1189.559	0.559015	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	8.8	2.93			1							3	1						18.215	18.215	2	0.0023799	12874	DP690-3	110.81	74.047			0.77867	0.90998	6.4528	3	0	Median	432060000	283150000	148910000	9762	272	9199	19226;19227;19228;19229;19230	46871;46872;46873;46874;46875;46876;46877;46878;46879;46880	46877		10	9606
LYGDADYLEER	0	1	Unmodified	1342.6041	0.60411052	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	4	0				1													16.39	16.39	2	2.343E-06	10400	DP690-4	214.96	179.53			0.86646	0.92032	NaN	1	0	Median	97737000	49998000	47739000	9763	516	9200	19231	46881;46882;46883;46884	46884		4	9606
LYGEFADPFK	1	0	Unmodified	1185.5706	0.57062555	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10	0										1							19.137	19.137	2	0.00042361	15442	DP690-10	120.87	91.951			0.82051	0.93891	NaN	1	0	Median	411040000	226090000	184950000	9764	272	9201	19232	46885;46886;46887;46888;46889	46885		5	9606
LYGPSSVSFADDFVR	0	1	Unmodified	1658.794	0.79403655	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	9	4					1								1				19.958	19.958	2	8.1092E-06	15440	DP690-13	174.23	160.07			0.82454	0.9477	NaN	1	0	Median	272010000	108460000	163550000	9765	819	9202	19233;19234	46890;46891;46892;46893;46894;46895	46891		6	9606
LYGSAGPPPTGEEDTAEKDEL	1	0	Unmodified	2174.9855	0.98553831	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	10	3.03				1							2	2					15.938	15.938	2	3.4683E-14	9621	DP690-4	168.93	128.16			1.2135	1.305	30.538	3	0	Plateau	87054000	45440000	41615000	9766	462	9203	19235;19236;19237;19238;19239	46896;46897;46898;46899;46900;46901;46902;46903;46904;46905;46906;46907;46908;46909;46910;46911	46908		16	9606
LYGYFHDATR	0	1	Unmodified	1241.5829	0.58292157	124	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	13	0													2				13.949	13.949	3	0.0042997	7268	DP690-13	109.83	74.652			NaN	NaN	NaN	0	0	Median	0	0	0	9767	124	9204	19240;19241	46912;46913	46912		2	9606
LYHEADKTYMLR	1	1	Oxidation (M)	1554.7501	0.75006325	270	O75663	TIPRL	TIP41-like protein	yes	yes	0	1	1	7	0							1										11.551	11.551	3	0.0077017	4180	DP690-7	71.153	44.605			0.882	0.9296	NaN	1	0	Median	10882000	5753100	5129100	9768	270	9205	19242	46914;46915	46914	283	2	9606
LYHPTVPLAR	0	1	Unmodified	1165.6608	0.66077796	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	13	0													2				13.781	13.781	2;3	0.0026266	6986	DP690-13	86.882	57.331			0.79952	0.97351	2.1013	2	0	Median	90082000	48274000	41808000	9769	1597	9206	19243;19244	46916;46917;46918;46919;46920;46921;46922;46923	46917		8	9606
LYIGNLSPAVTADDLR	0	1	Unmodified	1716.9046	0.90464964	2523	Q9Y6M1	IGF2BP2	Insulin-like growth factor 2 mRNA-binding protein 2	yes	yes	0	0	0	8	4				1								1					19.578	19.578	2	0.00026157	14213	DP690-4	113.77	88.914			0.62343	0.72006	NaN	1	0	Median	17052000	15826000	1225800	9770	2523	9207	19245;19246	46924;46925;46926	46926		3	9606
LYIVGGSDPYGQK	1	0	Unmodified	1395.7034	0.70343063	2529	Q9Y6Y0	IVNS1ABP	Influenza virus NS1A-binding protein	yes	yes	0	0	0	4	0				1													16.009	16.009	2	0.0001827	9896	DP690-4	153.97	114.12			1.0016	1.0911	NaN	1	0	Median	20907000	12657000	8249800	9771	2529	9208	19247	46927	46927		1	9606
LYKDDQLLDDGK	2	0	Unmodified	1421.7038	0.70382456	1328	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	1	8	0								1									13.701	13.701	3	1.9353E-05	6638	DP690-8	136.38	106.83			12.102	13.452	NaN	1	0	Median	106110000	11141000	94970000	9772	1328	9209	19248	46928;46929;46930;46931	46928		4	9606
LYKEELEQTYHAK	2	0	Unmodified	1650.8253	0.82533668	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	12	0												2					12.376	12.376	3;4	4.2193E-05	5306	DP690-12	181.98	136.16			0.72718	0.80128	1.7934	2	0	Median	678480000	383590000	294900000	9773	544	9210	19249;19250	46932;46933;46934;46935;46936;46937;46938;46939;46940	46935		9	9606
LYLINSPVVR	0	1	Unmodified	1172.6917	0.69174374	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														17.753	17.753	2	0.0023331	12304	DP690-3	100.02	68.788			1.2565	1.4452	NaN	1	0	Median	21268000	9345900	11922000	9774	721	9211	19251	46941;46942	46941		2	9606
LYLIQMIPR	0	1	Unmodified	1145.6631	0.66308614	2124	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	yes	yes	0	0	0	14	0														1			20.87	20.87	2	0.003865	16740	DP690-14	104.37	71.756			0.80395	1.0013	NaN	1	0	Median	7858200	4662600	3195600	9775	2124	9212	19252	46943	46943		1	9606
LYLNETFSELR	0	1	Unmodified	1383.7034	0.70343063	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															19.1	19.1	2	0.00013122	12513	DP690-2	166.07	132.69			2.1239	2.2202	NaN	1	0	Median	10104000	4035900	6068200	9776	602	9213	19253	46944;46945;46946;46947	46944		4	9606
LYLVDLAGSEK	1	0	Unmodified	1206.6496	0.64960415	648	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	3	0			1														18.542	18.542	2	0.0006058	13312	DP690-3	110.14	49.163			1.181	1.2492	NaN	1	0	Median	9530300	3904800	5625500	9777	648	9214	19254	46948;46949	46949		2	9606
LYMYQLFR	0	1	Unmodified	1132.5739	0.57393679	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	13	0													1				20.18	20.18	2	0.053506	15706	DP690-13	114.02	54.382			0.86905	1.0637	NaN	1	0	Median	33822000	17517000	16305000	9778	811	9215	19255	46950	46950		0	9606
LYNSIGNYEK	1	0	Unmodified	1199.5823	0.58225287	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	4	0				1													14.033	14.033	2	3.0663E-10	7319	DP690-4	182.98	98.741			NaN	NaN	NaN	0	0	Median	208340000	0	208340000	9779	1784	9216	19256	46951;46952;46953	46953		3	9606
LYNVEATSYALLALLAR	0	1	Unmodified	1880.0407	0.040749188	48	CON__Q2UVX4			yes	yes	0	0	0	1	0	1																25.708	25.708	2	0.0013457	17318	DP690-1	126.1	88.42		+	NaN	NaN	NaN	0	0	Median	691680	691680	0	9780	48	9217	19257	46954	46954		1	
LYPFQCFLAHDQAVR	0	1	Unmodified	1863.909	0.90902351	1734	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	11	0											1						19.404	19.404	3	0.0010521	15740	DP690-11	114.7	73.163			0.8183	0.97682	NaN	1	0	Median	33504000	18286000	15218000	9781	1734	9218	19258	46955;46956;46957	46955		3	9606
LYPGSVYGR	0	1	Unmodified	1010.5185	0.5185304	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	15	0															1		16.518	16.518	2	0.045371	10768	DP690-15	68.915	28.812			1.2287	1.3829	NaN	1	0	Median	61943000	27963000	33980000	9782	1285	9219	19259	46958	46958		1	9606
LYPVLQQSLVR	0	1	Unmodified	1314.766	0.76597131	1426	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	15	0															1		18.14	18.14	2	0.015673	12843	DP690-15	74.162	51.521			0.75493	0.87192	NaN	1	0	Median	10639000	6296400	4342400	9783	1426	9220	19260	46959;46960	46960		2	9606
LYPWGVVEVENPEHNDFLK	1	0	Unmodified	2284.1164	0.11643333	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	14	0														1			20.16	20.16	3	1.0591E-07	15767	DP690-14	143.28	143.28			0.71	0.84755	NaN	1	0	Median	127780000	77081000	50704000	9784	1310	9221	19261	46961;46962;46963;46964	46962		4	9606
LYQGHLQEESGPPPESMPK	1	0	Oxidation (M)	2138.9943	0.99426928	2514	Q9Y676	MRPS18B	28S ribosomal protein S18b, mitochondrial	yes	yes	0	1	0	14	0														1			12.302	12.302	3	0.0023171	5107	DP690-14	72.21	52.419			0.87594	1.0425	NaN	1	0	Median	16716000	7694000	9022200	9785	2514	9222	19262	46965;46966	46965	2949	2	9606
LYQGINQLPNVIQALEK	1	0	Unmodified	1940.0731	0.073111949	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	7	4			1								1						22.351	22.351	2	2.3056E-07	17844	DP690-3	179.67	179.67			0.79087	0.89128	10.273	2	0	Median	88894000	49131000	39763000	9786	736	9223	19263;19264	46967;46968;46969;46970;46971;46972;46973;46974;46975;46976;46977;46978	46974		12	9606
LYQGINQLPNVIQALEKHEGK	2	0	Unmodified	2391.291	0.29104365	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	1	11	0											1						19.816	19.816	4	0.0020577	16447	DP690-11	67.214	56.771			0.84305	0.98555	NaN	1	0	Median	60464000	35752000	24711000	9787	736	9224	19265	46979;46980	46979		2	9606
LYRPGSVAYVSR	0	2	Unmodified	1366.7357	0.73573382	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	7	4			1								1						13.056	13.056	3	0.00077982	6530	DP690-11	91.093	73.02			0.73371	0.82855	2.8768	2	0	Median	266610000	150010000	116610000	9788	873	9225	19266;19267	46981;46982;46983	46981		3	9606
LYRPPPVLDALGR	0	2	Unmodified	1465.8405	0.84053324	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	10	0										1							17.108	17.108	3	0.0034922	12606	DP690-10	109.6	56.463			NaN	NaN	NaN	0	0	Median	43914000	0	43914000	9789	1782	9226	19268	46984	46984		1	9606
LYSLALHPNAFK	1	0	Unmodified	1372.7503	0.75032125	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							16.268	16.268	3	0.00018504	11322	DP690-10	120.63	83.303			0.74857	0.82345	0.61092	2	0	Median	756410000	433440000	322970000	9790	1046	9227	19269;19270	46985;46986;46987;46988;46989;46990;46991;46992	46987		8	9606
LYSPSQIGAFVLMK	1	0	Oxidation (M)	1568.8273	0.82725094	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	0	8	4				1								1					20.558	20.558	2	0.0059669	15240	DP690-4	86.344	60.228			2.5441	2.7794	NaN	1	0	Median	21562000	3153200	18409000	9791	695	9228	19271;19272	46993;46994;46995;46996;46997;46998	46996	1011	6	9606
LYSVSYLLK	1	0	Unmodified	1084.6168	0.61684746	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.5	4.57		1							1	1	1				1	1	18.744	18.744	2	3.6E-10	14834	DP690-11	182.39	78.178			0.87953	1.0336	8.8721	4	0	Median	238070000	62921000	175140000	9792	549	9229	19273;19274;19275;19276;19277;19278	46999;47000;47001;47002;47003;47004;47005;47006;47007;47008;47009;47010;47011;47012;47013;47014;47015;47016;47017;47018;47019;47020;47021	47003		23	9606
LYSVVSQLIR	0	1	Unmodified	1176.6867	0.68665836	1803;93	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	no	no	0	0	0	2	0		1															19.147	19.147	2	9.0072E-05	12584	DP690-2	155.07	155.07			1.2222	1.2669	NaN	1	0	Median	4458100	2038100	2420000	9793	1803;93	9230	19279	47022;47023;47024;47025	47022		4	9606
LYTGPGLAIHCMQVHK	1	0	Unmodified	1823.9175	0.9174797	184	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	0	12	0												1					14.706	14.706	4	0.0056003	8553	DP690-12	64.244	54.323			0.87949	0.98878	NaN	1	0	Median	177600000	96836000	80769000	9794	184	9231	19280	47026;47027;47028	47026		3	9606
LYTLVTYVPVTTFK	1	0	Unmodified	1643.9174	0.91744615	1003	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	16	0																1	20.956	20.956	2	1.6723E-05	15730	DP690-16	136.5	122.27			0.80463	0.94237	NaN	1	0	Median	8410600	4328200	4082400	9795	1003	9232	19281	47029;47030;47031	47029		3	9606
LYTVCDVALCVINSK	1	0	Unmodified	1753.8743	0.87427749	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10	0										2							21.717	21.717	2	0.047596	19029	DP690-10	117.86	56.3			NaN	NaN	NaN	0	0	Median	0	0	0	9796	1377	9233	19282;19283	47032;47033	47032		2	9606
LYVDFPQHLR	0	1	Unmodified	1286.6772	0.6771563	725	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	3	0			1														16.365	16.365	3	0.020935	10478	DP690-3	56.013	56.013			0.72735	0.81551	NaN	1	0	Median	7600200	4349800	3250400	9797	725	9234	19284	47034	47034		1	9606
LYYFQYPCYQEGLR	0	1	Unmodified	1898.8662	0.86615564	2204	Q9NRW3	APOBEC3C	DNA dC->dU-editing enzyme APOBEC-3C	yes	yes	0	0	0	7	0							1										19.42	19.42	2	3.8502E-05	13834	DP690-7	156.58	124.98			0.65149	0.71154	NaN	1	0	Median	69840000	41573000	28267000	9798	2204	9235	19285	47035;47036;47037;47038	47037		4	9606
MAAAVPDEAVAR	0	1	Acetyl (Protein N-term)	1241.6074	0.60742176	2241	Q9NVX2	NLE1	Notchless protein homolog 1	yes	yes	1	0	0	12	0												1					24.937	24.937	2	0.018813	21517	DP690-12	80.455	36.804			NaN	NaN	NaN	0	0	Median	0	0	0	9799	2241	9236	19286	47039	47039		1	9606
MAALEVYVR	0	1	Oxidation (M)	1066.5481	0.54811597	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	0		1															15.292	15.292	2	0.02702	8056	DP690-2	83.206	29.049			1.1067	1.158	NaN	1	0	Median	7462300	3681500	3780700	9800	1179	9237	19287	47040;47041;47042;47043	47040	1825	4	9606
MACGAEFSMIMDCK	1	0	3 Oxidation (M)	1697.6228	0.62275553	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	3	0	9.67	4.03				1								1	1				14.4	14.4	2	4.3761E-05	7933	DP690-13	136.49	136.49			0.91314	0.99867	9.3646	3	0	Median	186530000	104660000	81869000	9801	2298	9238	19288;19289;19290	47044;47045;47046;47047;47048;47049;47050;47051;47052;47053;47054	47050	2747;2748;2749	11	9606
MACGAEFSMIMDCK	1	0	2 Oxidation (M)	1681.6278	0.6278409	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	2	0	12.3	0.471												4	2				16.02	16.02	2	3.7608E-05	9373	DP690-12	147.28	147.28			0.89016	1.0358	5.3261	5	0	Median	438810000	231810000	206990000	9802	2298	9238	19291;19292;19293;19294;19295;19296	47055;47056;47057;47058;47059;47060;47061;47062;47063;47064;47065;47066;47067;47068;47069;47070;47071	47057	2747;2748;2749	16	9606
MACGAEFSMIMDCK	1	0	Oxidation (M)	1665.6329	0.63292628	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	1	0	12	0												3					17.708	17.708	2	9.8057E-05	11831	DP690-12	139.32	126.75			0.93464	1.0834	9.1307	3	0	Median	273570000	136360000	137210000	9803	2298	9238	19297;19298;19299	47072;47073;47074;47075;47076;47077;47078;47079;47080	47074	2747;2748;2749	8	9606
MACGAEFSMIMDCK	1	0	Unmodified	1649.638	0.63801166	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	12	0												1					19.045	19.045	2	0.022596	14590	DP690-12	97.911	81.658			NaN	NaN	NaN	0	0	Median	0	0	0	9804	2298	9238	19300	47081	47081		1	9606
MADAAATAGAGGSGTR	0	1	Acetyl (Protein N-term);Oxidation (M)	1421.6205	0.62050564	1556	Q7Z7C8	TAF8	Transcription initiation factor TFIID subunit 8	yes	yes	1	1	0	4	0				1													13.579	13.579	2	0.040797	6691	DP690-4	50.108	6.7998			0.7078	0.82437	NaN	1	0	Median	10941000	5730300	5211000	9805	1556	9239	19301	47082	47082	2234	1	9606
MADPESNQEAVNSSAAR	0	1	Oxidation (M)	1791.7694	0.76935472	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	1	0	10	0										1							10.831	10.831	2	8.0406E-09	3488	DP690-10	179.6	154.59			0.79194	0.98828	NaN	1	0	Median	27095000	16066000	11029000	9806	1282	9240	19302	47083;47084	47083	1966	2	9606
MADPESNQEAVNSSAAR	0	1	Unmodified	1775.7744	0.7744401	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	10	0										2							12.075	12.075	2	2.554E-07	5211	DP690-10	181.76	140.59			NaN	NaN	NaN	0	0	Median	0	0	0	9807	1282	9240	19303;19304	47085;47086	47085		2	9606
MADPQSIQESQNLSMFLANHNK	1	0	2 Oxidation (M)	2534.153	0.15297154	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	2	0	3	0			1														17.306	17.306	3	0.013873	11648	DP690-3	70.414	44.869			NaN	NaN	NaN	0	0	Median	4591900	0	4591900	9808	1531	9241	19305	47087;47088	47087	2210;2211	2	9606
MAEIGEHVAPSEAANSLEQAQAAAER	0	1	Oxidation (M)	2695.2508	0.25077133	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	0	2.5	0.5		1	1														16.507	16.507	3	3.3489E-38	9483	DP690-2	223.91	201.67			1.416	1.4768	NaN	1	0	Median	20982000	8696100	12286000	9809	602	9242	19306;19307	47089;47090;47091;47092;47093;47094;47095;47096	47089	814	8	9606
MAEIGEHVAPSEAANSLEQAQAAAER	0	1	Unmodified	2679.2559	0.25585671	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		2															17.087	17.087	3	5.3481E-06	10227	DP690-2	115.79	82.769			NaN	NaN	NaN	0	0	Median	3304200	1370400	1933800	9810	602	9242	19308;19309	47097;47098;47099	47098		3	9606
MAELKVEAPASVDWQKR	2	1	Oxidation (M)	1973.004	0.0040461055	2390	Q9ULM0	PLEKHH1	Pleckstrin homology domain-containing family H member 1	yes	yes	0	1	2	8	0								1									10.41	10.41	4	0.028168	2956	DP690-8	51.466	51.466			0.056239	0.060159	NaN	1	0	Median	13924000	12964000	960200	9811	2390	9243	19310	47100	47100	2820	1	9606
MAEMLVELVR	0	1	2 Oxidation (M)	1221.6097	0.60972994	2510	Q9Y605	MRFAP1	MORF4 family-associated protein 1	yes	yes	0	2	0	16	0																1	16.847	16.847	2	0.0031029	10890	DP690-16	101.11	74.058			0.85921	0.99356	NaN	1	0	Median	25867000	14702000	11165000	9812	2510	9244	19311	47101;47102;47103;47104	47104	2941;2942	4	9606
MAFNGCCPDCK	1	0	Oxidation (M)	1374.4825	0.4824973	2261	Q9NYG5	ANAPC11	Anaphase-promoting complex subunit 11	yes	yes	0	1	0	16	0																1	10.947	10.947	2	0.00016388	3532	DP690-16	134.25	134.25			0.86917	1.0126	NaN	1	0	Median	3938400	2119900	1818500	9813	2261	9245	19312	47105;47106;47107;47108	47107	2718	4	9606
MAGDPVANVR	0	1	Oxidation (M)	1044.5022	0.50222841	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	1	0	4	0				1													11.364	11.364	2	0.00033022	3898	DP690-4	127.46	84.215			1.727	1.8884	NaN	1	0	Median	54251000	19661000	34590000	9814	624	9246	19313	47109;47110;47111;47112	47109	858	4	9606
MAGLNSLEAVK	1	0	Acetyl (Protein N-term);Oxidation (M)	1189.6013	0.60127375	1028	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	1	1	0	11.5	1.5										1			1				13.848	13.848	2	0.024886	7137	DP690-13	58.596	17.169			0.95092	1.0457	NaN	1	0	Median	281010000	144440000	136570000	9815	1028	9247	19314;19315	47113;47114	47114	1560	2	9606
MAKPEEVLVVENDQGEVVR	1	1	Oxidation (M)	2156.0783	0.078333261	128	O14980	XPO1	Exportin-1	yes	yes	0	1	1	11	0											1						15.291	15.291	3	0.00082808	9759	DP690-11	111.65	70.847			NaN	NaN	NaN	0	0	Median	23722000	0	23722000	9816	128	9248	19316	47115;47116	47115	142	2	9606
MALDIEIATYR	0	1	Oxidation (M)	1310.654	0.6540376	424	P08670;P41219	VIM;PRPH	Vimentin;Peripherin	yes	no	0	1	0	12.5	0.5												1	1				18.073	18.073	2	7.6016E-06	12863	DP690-13	239.6	146.45			0.85403	0.9662	2.8056	2	0	Median	485230000	259100000	226130000	9817	424	9249	19317;19318	47117;47118;47119;47120;47121;47122;47123;47124;47125;47126;47127	47125	486	11	9606
MALELLTQEFGIPIER	0	1	Oxidation (M)	1874.9812	0.9811854	796	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	3	0			1														22.852	22.852	2	0.011746	18496	DP690-3	98.902	61.205			NaN	NaN	NaN	0	0	Median	500340	0	500340	9818	796	9250	19319	47128	47128	1204	1	9606
MALIGLGVSHPVLK	1	0	Oxidation (M)	1449.8378	0.83775605	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	13.5	0.764													4	1	1		16.474	16.474	2;3	7.9733E-05	10110	DP690-13	169.65	133.34			0.76415	0.84273	7.602	5	0	Median	1334900000	781070000	553830000	9819	565	9251	19320;19321;19322;19323;19324;19325	47129;47130;47131;47132;47133;47134;47135;47136;47137;47138;47139;47140;47141;47142;47143;47144	47135	741	16	9606
MALIGLGVSHPVLK	1	0	Unmodified	1433.8428	0.84284142	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13	0													2				17.367	17.367	2;3	0.00032893	11966	DP690-13	101.32	87.641			0.75989	0.82546	1.7793	2	0	Median	860390000	509400000	350990000	9820	565	9251	19326;19327	47145;47146;47147;47148;47149;47150	47148		6	9606
MALIQMGSVEEAVQALIDLHNHDLGENHHLR	0	1	2 Oxidation (M)	3521.7144	0.71436981	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	2	0	12	0												2					20.373	20.373	5;6	1.5374E-10	16351	DP690-12	143.37	143.37			0.81538	0.91424	4.956	2	0	Median	508020000	266540000	241480000	9821	595	9252	19328;19329	47151;47152;47153;47154;47155;47156;47157;47158	47156	790;791	8	9606
MALLATVLGR	0	1	Oxidation (M)	1059.6111	0.61105057	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	0	2	0		1															18.82	18.82	2	0.00051739	12152	DP690-2	124.08	44.964			1.34	1.3982	NaN	1	0	Median	18085000	7765700	10319000	9822	602	9253	19330	47159;47160;47161;47162	47161	815	4	9606
MALLATVLGR	0	1	Unmodified	1043.6161	0.61613595	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															20.385	20.385	2	0.00014317	13932	DP690-2	136.75	84.35			1.2673	1.3079	NaN	1	0	Median	4045700	1605200	2440500	9823	602	9253	19331	47163;47164;47165;47166	47165		4	9606
MALNHPYFNDLDNQIK	1	0	Unmodified	1931.92	0.91998213	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	14	0														1			16.974	16.974	3	0.0011669	11618	DP690-14	123.72	61.664			NaN	NaN	NaN	0	0	Median	83314000	83314000	0	9824	391	9254	19332	47167	47167		1	9606
MALPGARAR	0	2	Acetyl (Protein N-term);Oxidation (M)	999.52838	0.52838358	2153	Q9HA92	RSAD1	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial	yes	yes	1	1	1	16	0																1	18.239	18.239	2	0.043527	12619	DP690-16	58.604	17.377			NaN	NaN	NaN	0	0	Median	0	0	0	9825	2153	9255	19333	47168	47168	2641	1	9606
MALPRLTGALR	0	2	Acetyl (Protein N-term)	1239.7122	0.7121616	1649	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	1	0	1	12	4.32						1								1		1	16.82	16.82	3	0.013538	9981	DP690-16	66.92	66.92			0.72275	0.84935	27.204	3	0	Median	225160000	124170000	100990000	9826	1649	9256	19334;19335;19336	47169;47170;47171	47170		3	9606
MANITSSQILDQLK	1	0	Unmodified	1560.8181	0.81814282	1439	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	11	0											1						19.223	19.223	2	0.02017	15417	DP690-11	69.261	69.261			0.65651	0.79663	NaN	1	0	Median	40623000	22611000	18012000	9827	1439	9257	19337	47172;47173	47172		2	9606
MANITSSQILDQLK	1	0	Oxidation (M)	1576.8131	0.81305744	1439	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	1	0	11	0											1						18.355	18.355	2	0.0307	14231	DP690-11	92.925	41.489			NaN	NaN	NaN	0	0	Median	0	0	0	9828	1439	9257	19338	47174	47174	2151	1	9606
MAPALSGANLTSPR	0	1	Oxidation (M)	1400.7082	0.70819844	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	1	0	9	0									1								14.422	14.422	2	0.00026736	7664	DP690-9	119.45	93.641			0.74535	0.93115	NaN	1	0	Median	11800000	7171100	4629100	9829	2422	9258	19339	47175;47176;47177;47178;47179	47177	2852	5	9606
MAPPQNQWPNYEEK	1	0	Unmodified	1730.7723	0.77225526	895	P55196	MLLT4	Afadin	yes	yes	0	0	0	15	1														1		1	12.867	12.867	2	0.0058998	5642	DP690-16	78.939	47.653			0.89463	1.0499	9.2376	2	0	Median	78381000	40346000	38035000	9830	895	9259	19340;19341	47180;47181;47182	47181		3	9606
MAPTPIPTR	0	1	Oxidation (M)	998.5219	0.52190122	1365	Q16643	DBN1	Drebrin	yes	yes	0	1	0	11	0											1						11.866	11.866	2	0.0088402	4776	DP690-11	98.458	75.966			0.72928	0.80057	NaN	1	0	Median	350810000	207660000	143150000	9831	1365	9260	19342	47183;47184	47183	2111	2	9606
MAPTPIPTR	0	1	Unmodified	982.52699	0.52698659	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	0	11	0											1						12.996	12.996	2	0.017214	6439	DP690-11	82.279	34.536			0.59811	0.65383	NaN	1	0	Median	370390000	241400000	128990000	9832	1365	9260	19343	47185;47186;47187;47188;47189	47188		5	9606
MAQALEELR	0	1	Oxidation (M)	1075.5332	0.53319418	1104	Q03252	LMNB2	Lamin-B2	yes	yes	0	1	0	12	0												1					13.868	13.868	2	0.021147	7410	DP690-12	98.582	58.936			NaN	NaN	NaN	0	0	Median	18506000	18506000	0	9833	1104	9261	19344	47190	47190	1722	1	9606
MAQEVLTHLK	1	0	Oxidation (M)	1184.6223	0.62234354	128	O14980	XPO1	Exportin-1	yes	yes	0	1	0	3	0			1														12.223	12.223	2	0.00023448	4948	DP690-3	137.05	92.023			1.0422	1.1137	NaN	1	0	Median	13930000	6500800	7428800	9834	128	9262	19345	47191;47192;47193;47194	47192	143	4	9606
MASNIFGPTEEPQNIPK	1	0	Oxidation (M)	1887.9037	0.90366336	2139	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	1	0	12.3	3.77							1								2		16.602	16.602	2	1.1396E-18	10865	DP690-15	205.87	152.66			0.63576	0.68992	NaN	1	0	Median	41791000	23481000	18311000	9835	2139	9263	19346;19347;19348	47195;47196;47197;47198;47199;47200;47201;47202;47203	47196	2632	9	9606
MASTFIGNSTAIQELFK	1	0	Oxidation (M)	1872.9291	0.92914983	2010	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	1	0	13	0													1				21.593	21.593	2	2.6082999999999997E-22	17342	DP690-13	239.19	6.8204			0.99309	1.0763	NaN	1	0	Median	408870000	198790000	210080000	9836	2010	9264	19349	47204	47204	2547	1	9606
MATELSDAILEGYPK	1	0	Oxidation (M)	1652.7967	0.79673867	2308	Q9P2W1	PSMC3IP	Homologous-pairing protein 2 homolog	yes	yes	0	1	0	15	0															1		18.805	18.805	2	1.1276E-06	13744	DP690-15	188.27	103.45			0.5482	0.63736	NaN	1	0	Median	5611000	3350200	2260900	9837	2308	9265	19350	47205;47206;47207;47208;47209	47205	2756	5	9606
MATEVAADALGEEWK	1	0	Oxidation (M)	1635.745	0.74503745	989	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	0	14	0														1			17.748	17.748	2	0.020466	12646	DP690-14	102.4	62.483			NaN	NaN	NaN	0	0	Median	0	0	0	9838	989	9266	19351	47210	47210	1508	1	9606
MAVLALLAK	1	0	Oxidation (M)	944.57287	0.57287415	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	7.8	2.93		1							3	1							18.117	18.117	1;2	0.0012543	11876	DP690-9	135.87	61.61			0.81906	0.93108	12.767	5	0	Median	384200000	214590000	169600000	9839	1046	9267	19352;19353;19354;19355;19356	47211;47212;47213;47214;47215;47216;47217;47218;47219;47220;47221;47222;47223;47224;47225	47219	1619	14	9606
MAVLALLAK	1	0	Unmodified	928.57796	0.57795953	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							19.785	19.785	2	0.0063727	14630	DP690-9	94.262	59.061			0.81261	0.97136	4.1719	2	0	Median	254270000	139320000	114950000	9840	1046	9267	19357;19358	47226;47227;47228;47229;47230;47231;47232;47233	47232		8	9606
MAVLNEQVK	1	0	Oxidation (M)	1046.543	0.54303059	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	1	0	4	0				1													11.618	11.618	2	0.0033877	4176	DP690-4	114.5	47.328			0.88997	0.97682	NaN	1	0	Median	13808000	7319900	6487800	9841	788	9268	19359	47234;47235;47236;47237	47236	1174	4	9606
MAVQDAVDALMQK	1	0	2 Oxidation (M)	1450.6796	0.67960042	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	2	0	14	2												1				1	16.575	16.575	2	0.00040433	10562	DP690-16	115.18	77.984			0.79939	0.94486	8.3783	2	0	Median	70638000	37943000	32695000	9842	750	9269	19360;19361	47238;47239;47240;47241;47242;47243;47244	47243	1102;1103	7	9606
MAVQDAVDALMQK	1	0	Oxidation (M)	1434.6847	0.6846858	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	1	0	12	0												1					18.325	18.325	2	0.00048037	13615	DP690-12	114.83	88.084			0.89302	1.0654	NaN	1	0	Median	66012000	34490000	31522000	9843	750	9269	19362	47245;47246;47247;47248	47245	1102;1103	4	9606
MAVQDAVDALMQK	1	0	Unmodified	1418.6898	0.68977118	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					20.728	20.728	2	0.0037854	16833	DP690-12	145.34	101.69			NaN	NaN	NaN	0	0	Median	11097000	11097000	0	9844	750	9269	19363	47249;47250	47249		2	9606
MAVTFIGNSTAIQELFK	1	0	Oxidation (M)	1884.9655	0.96553533	406	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	0	9.64	4.43			1	1	2	1	1	1					4	1	1	1	22.372	22.372	2	4.2814999999999996E-40	18070	DP690-13	328.26	294.72			1.022	1.1158	16.611	13	0	Median	1454300000	715010000	739270000	9845	406	9270	19364;19365;19366;19367;19368;19369;19370;19371;19372;19373;19374;19375;19376;19377	47251;47252;47253;47254;47255;47256;47257;47258;47259;47260;47261;47262;47263;47264;47265;47266;47267;47268;47269;47270;47271;47272;47273;47274;47275;47276;47277;47278;47279;47280;47281;47282;47283;47284;47285;47286;47287;47288;47289	47253	442	39	9606
MAVTFIGNSTAIQELFK	1	0	Unmodified	1868.9706	0.97062071	406	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	10.3	3.77					1								2				22.935	22.935	2	3.2541E-33	18971	DP690-13	220.66	184.94			0.96644	1.0172	4.5329	3	0	Plateau	329300000	158210000	171090000	9846	406	9270	19378;19379;19380	47290;47291;47292;47293;47294;47295;47296;47297	47295		7	9606
MAVTFIGNSTAIQELFKR	1	1	Oxidation (M)	2041.0666	0.066646362	406	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	1	11.3	4.64					1								1			1	20.426	20.426	3	4.4558E-30	16010	DP690-13	233.62	233.62			1.0917	1.2432	10.794	3	0	Median	126830000	60130000	66698000	9847	406	9271	19381;19382;19383	47298;47299;47300;47301;47302;47303;47304;47305;47306;47307;47308;47309;47310	47299	442	13	9606
MAYEYADER	0	1	Oxidation (M)	1162.4601	0.46008882	222	O60783	MRPS14	28S ribosomal protein S14, mitochondrial	yes	yes	0	1	0	16	0																1	11.835	11.835	2	0.0014458	4493	DP690-16	127.46	112.52			0.93493	1.0906	NaN	1	0	Median	8099000	3400300	4698700	9848	222	9272	19384	47311;47312	47312	224	2	9606
MAYVVDLDDEYADTDIPTTLIR	0	1	Oxidation (M)	2544.1942	0.19415088	1180	Q13123	IK	Protein Red	yes	yes	0	1	0	11	0											1						21.663	21.663	2	0.0040002	18807	DP690-11	103.79	81.426			NaN	NaN	NaN	0	0	Median	0	0	0	9849	1180	9273	19385	47313	47313	1830	1	9606
MCLFAGFQR	0	1	Oxidation (M)	1144.5158	0.51576998	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	0	11	0											1						17.407	17.407	2	0.073848	12876	DP690-11	69.176	49.399			0.86464	1.0426	NaN	1	0	Median	86687000	47001000	39686000	9850	1078	9274	19386	47314;47315	47315		2	9606
MCLFAGFQR	0	1	Unmodified	1128.5209	0.52085536	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	9	3.46			1								3						19.063	19.063	2	0.0028992	15275	DP690-11	132.96	92.857			0.97512	1.0894	NaN	1	0	Median	67873000	64446000	3427700	9851	1078	9274	19387;19388;19389;19390	47316;47317;47318;47319;47320	47316		5	9606
MCSTPGMPAPGASLALR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1789.8161	0.81611068	209	O60522	TDRD6	Tudor domain-containing protein 6	yes	yes	1	2	0	7.72	2.62				1	1	1	10	2	1					1	1		13.004	13.004	2;3	0.0071224	2853	DP690-5	84.31	22.892			NaN	NaN	NaN	0	0	Median	52028000000	52028000000	0	9852	209	9275	19391;19392;19393;19394;19395;19396;19397;19398;19399;19400;19401;19402;19403;19404;19405;19406;19407;19408	47321;47322;47323;47324;47325;47326;47327;47328;47329;47330;47331;47332;47333;47334;47335;47336;47337;47338;47339;47340;47341;47342;47343;47344;47345;47346;47347;47348;47349;47350;47351	47326	215;216	31	9606
MCTLIDKFDEHDGPVR	1	1	Oxidation (M)	1947.8819	0.88188206	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	1	1	3	0			1														14.947	14.947	3	0.054051	8591	DP690-3	55.097	42.605			1.6396	1.8184	NaN	1	0	Median	9507400	4285400	5222000	9853	878	9276	19409	47352	47352		0	9606
MDAEVPDVNIEGPDAK	1	0	Oxidation (M)	1714.772	0.77198048	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9.5	0.5									1	1							16.238	16.238	2	8.5121E-07	11258	DP690-10	158.25	134.5			0.64826	0.80084	3.1394	2	0	Median	129820000	80375000	49443000	9854	1145	9277	19410;19411	47353;47354;47355;47356;47357;47358;47359;47360;47361	47353	1788	9	9606
MDAGMIGNQVNR	0	1	2 Oxidation (M)	1336.5864	0.58636874	1450	Q5VZE5	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	yes	yes	0	2	0	3	0			1														11.059	11.059	2	0.015456	3510	DP690-3	91.584	63.94			NaN	NaN	NaN	0	0	Median	3127900	0	3127900	9855	1450	9278	19412	47362;47363	47363	2154;2155	2	9606
MDAPGALAQTAAPGPGR	0	1	Acetyl (Protein N-term);Oxidation (M)	1637.7832	0.78315429	2161	Q9HBH0	RHOF	Rho-related GTP-binding protein RhoF	yes	yes	1	1	0	15	0															1		16.346	16.346	2	0.014188	10571	DP690-15	78.529	37.913			NaN	NaN	NaN	0	0	Median	0	0	0	9856	2161	9279	19413	47364	47364	2647	1	9606
MDAPGALAQTAAPGPGRK	1	1	Acetyl (Protein N-term);Oxidation (M)	1765.8781	0.87811731	2161	Q9HBH0	RHOF	Rho-related GTP-binding protein RhoF	yes	yes	1	1	1	15	0															1		14.189	14.189	2	6.2427E-09	7682	DP690-15	161.87	122.09			NaN	NaN	NaN	0	0	Median	4592800	4592800	0	9857	2161	9280	19414	47365;47366	47366	2647	2	9606
MDATANDVPSPYEVR	0	1	Oxidation (M)	1679.7461	0.74610008	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	1	0	4	0				1													15.138	15.138	2	1.1531E-10	8659	DP690-4	212.68	190.9			0.77654	0.88733	NaN	1	0	Median	22198000	12539000	9659300	9858	623	9281	19415	47367;47368;47369;47370;47371;47372	47369	856	6	9606
MDCQECPEGYR	0	1	Oxidation (M)	1459.5166	0.5166342	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	9.77	5.1		1	3						1	1	1	1	1	1	1	2	11.147	11.147	2	3.3443E-06	3932	DP690-11	204.52	204.52			0.74751	0.89549	19.086	9	0	Median	806150000	452320000	353840000	9859	549	9282	19416;19417;19418;19419;19420;19421;19422;19423;19424;19425;19426;19427;19428	47373;47374;47375;47376;47377;47378;47379;47380;47381;47382;47383;47384;47385;47386;47387;47388;47389;47390;47391;47392;47393;47394;47395;47396;47397;47398;47399;47400;47401;47402;47403;47404;47405;47406;47407;47408;47409;47410;47411;47412;47413;47414;47415;47416;47417;47418;47419;47420;47421;47422;47423;47424;47425	47384	710	53	9606
MDCQECPEGYR	0	1	Unmodified	1443.5217	0.52171957	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.8	3.8		1							1	1	1	1	1	1	1		12.131	12.131	2	1.2056E-06	5315	DP690-10	227.27	196.87			0.77832	0.91994	4.9036	8	0	Median	1072199999.9999999	607940000	464260000	9860	549	9282	19429;19430;19431;19432;19433;19434;19435;19436	47426;47427;47428;47429;47430;47431;47432;47433;47434;47435;47436;47437;47438;47439;47440;47441;47442;47443;47444;47445;47446;47447;47448;47449;47450;47451;47452;47453;47454;47455;47456;47457;47458	47428		33	9606
MDCQETPEGYK	1	0	Oxidation (M)	1372.5275	0.52751646	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	6	4		1								1							10.887	10.887	2	0.00048043	3675	DP690-10	120.27	111.74			0.7447	0.82105	11.662	2	0	Median	100440000	56242000	44194000	9861	250	9283	19437;19438	47459;47460;47461	47459	245	3	9606
MDCQETPEGYK	1	0	Unmodified	1356.5326	0.53260184	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							11.927	11.927	2	3.7377E-05	5001	DP690-10	183.43	159.28			0.70831	0.87422	NaN	1	0	Median	85531000	49920000	35611000	9862	250	9283	19439	47462;47463;47464;47465;47466	47463		5	9606
MDDDIAALVVDNGSGMCK	1	0	Acetyl (Protein N-term);Oxidation (M)	1967.8275	0.82746323	926	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	1	1	0	14	0														1			23.321	23.321	2	0.032026	19709	DP690-14	70.889	46.036			NaN	NaN	NaN	0	0	Median	0	0	0	9863	926	9284	19440	47467	47467	1422	1	9606
MDDDIAALVVDNGSGMCK	1	0	Acetyl (Protein N-term)	1951.8325	0.83254861	926	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	1	0	0	14	0														1			24.125	24.125	2	0.0026866	20628	DP690-14	111.79	92.152			NaN	NaN	NaN	0	0	Median	0	0	0	9864	926	9284	19441	47468	47468		1	9606
MDDKELIEYFK	2	0	Acetyl (Protein N-term);Oxidation (M)	1487.6854	0.68539731	1265	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	1	1	1	12	3.56							1							1	1		19.81	19.81	2	0.00060133	14955	DP690-15	109.16	86.012			0.81682	0.9295	22.508	3	0	Median	80350000	43248000	37102000	9865	1265	9285	19442;19443;19444	47469;47470;47471;47472;47473;47474;47475	47473	1933	7	9606
MDDKELIEYFK	2	0	Acetyl (Protein N-term)	1471.6905	0.69048269	1265	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	1	0	1	14	0														1			21.403	21.403	2	1.7631E-05	17338	DP690-14	138.76	138.76			0.7879	0.88384	NaN	1	0	Median	37828000	22282000	15546000	9866	1265	9285	19445	47476;47477;47478;47479	47476		4	9606
MDDLDALLADLESTTSHISK	1	0	Acetyl (Protein N-term);Oxidation (M)	2232.0468	0.046758361	786	P49023	PXN	Paxillin	yes	yes	1	1	0	4	0				1													26.449	26.449	2	0.0022008	20056	DP690-4	98.439	68.263			NaN	NaN	NaN	0	0	Median	0	0	0	9867	786	9286	19446	47480	47480	1169	1	9606
MDDREDLVYQAK	1	1	Acetyl (Protein N-term);Oxidation (M)	1539.6875	0.68752257	970	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	1	1	1	11	4							1								1		14.58	14.58	2	0.0052685	8178	DP690-15	82.417	57.579			0.81452	0.91152	NaN	1	0	Median	107390000	42496000	64895000	9868	970	9287	19447;19448	47481;47482;47483;47484;47485;47486	47484	1488	6	9606
MDDTLFQLK	1	0	Acetyl (Protein N-term);Oxidation (M)	1167.5482	0.54817555	2172	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	yes	yes	1	1	0	15.5	0.5															1	1	21.112	21.112	1;2	0.0096707	15950	DP690-16	88.37	56.948			1.2564	1.4296	NaN	1	0	Median	2352700	1072800	1279900	9869	2172	9288	19449;19450	47487;47488	47488	2658	2	9606
MDENEFVAVTSTNAAK	1	0	Oxidation (M)	1741.7829	0.78287952	104	O14531	DPYSL4	Dihydropyrimidinase-related protein 4	yes	yes	0	1	0	12	0												1					14.918	14.918	2	3.8232E-05	8875	DP690-12	174.46	129.3			NaN	NaN	NaN	0	0	Median	0	0	0	9870	104	9289	19451	47489	47489	114	1	9606
MDENQFVAVTSTNAAK	1	0	Oxidation (M)	1740.7989	0.79886394	1359;1260;1259	Q14194;Q14195;Q16555	CRMP1;DPYSL3;DPYSL2	Dihydropyrimidinase-related protein 1;Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 2	no	no	0	1	0	8.14	3.91			1	2							2	2					15.168	15.168	2	3.5415E-27	8359	DP690-4	288.61	263.73			0.8714	0.92451	3.0216	2	0	Median	101980000	67424000	34552000	9871	1259;1260;1359	9290	19452;19453;19454;19455;19456;19457;19458	47490;47491;47492;47493;47494;47495;47496;47497;47498;47499;47500;47501;47502;47503;47504;47505;47506;47507	47501	1899	18	9606
MDENQFVAVTSTNAAK	1	0	Unmodified	1724.8039	0.80394931	1359;1260;1259	Q14194;Q14195;Q16555	CRMP1;DPYSL3;DPYSL2	Dihydropyrimidinase-related protein 1;Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 2	no	no	0	0	0	7.5	3.5				1							1						16.15	16.15	2	3.894E-13	10054	DP690-4	212.1	212.1			0.90168	0.9813	NaN	1	0	Median	30746000	20339000	10407000	9872	1259;1260;1359	9290	19459;19460	47508;47509;47510;47511	47510		4	9606
MDEPSPLAQPLELNQHSR	0	1	Acetyl (Protein N-term);Oxidation (M)	2119.0004	0.0004172906	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	1	0	2	0		2															17.841	17.841	2	1.9795E-07	11132	DP690-2	142.85	142.85			0.71351	0.73028	NaN	1	0	Median	3373400	1862700	1510600	9873	1179	9291	19461;19462	47512;47513;47514;47515;47516	47513	1826	5	9606
MDEQALLGLNPNADSDFR	0	1	Acetyl (Protein N-term);Oxidation (M)	2062.9266	0.92658365	182	O43592	XPOT	Exportin-T	yes	yes	1	1	0	3	0			1														21.964	21.964	2	0.011549	17539	DP690-3	88.78	54.394			NaN	NaN	NaN	0	0	Median	2565800	2565800	0	9874	182	9292	19463	47517	47517	196	1	9606
MDETDASSAVK	1	0	Unmodified	1152.4969	0.49686826	1185	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	13	0													1				11.439	11.439	2	7.6932E-05	3948	DP690-13	168.83	121.17			0.7856	0.89473	NaN	1	0	Median	113190000	63966000	49220000	9875	1185	9293	19464	47518;47519;47520;47521;47522	47518		5	9606
MDFLLGNPFSSPVGQR	0	1	Acetyl (Protein N-term);Oxidation (M)	1821.872	0.8719693	223	O60784	TOM1	Target of Myb protein 1	yes	yes	1	1	0	4	0				1													24.444	24.444	2	0.0098296	19155	DP690-4	90.412	61.509			NaN	NaN	NaN	0	0	Median	227990	0	227990	9876	223	9294	19465	47523	47523	225	1	9606
MDGAVMEGPLFLQSQR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1851.8495	0.8495193	1952	Q99704	DOK1	Docking protein 1	yes	yes	1	2	0	4	0				1													20.322	20.322	2	0.0043424	15067	DP690-4	93.011	64.728			NaN	NaN	NaN	0	0	Median	0	0	0	9877	1952	9295	19466	47524	47524	2490;2491	1	9606
MDGIVPDIAVGTK	1	0	Acetyl (Protein N-term);Oxidation (M)	1372.6908	0.69081704	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	1	1	0	10.2	3.63				1								2	1				20.818	20.818	1;2	5.4363E-05	15553	DP690-13	65.563	65.563			0.76637	0.86946	5.5232	4	0	Median	173590000	101660000	71928000	9878	595	9296	19467;19468;19469;19470	47525;47526;47527;47528;47529;47530;47531;47532;47533;47534	47532	792	10	9606
MDGIVPDIAVGTK	1	0	Acetyl (Protein N-term)	1356.6959	0.69590241	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	1	0	0	12	0												1					22.644	22.644	2	0.00085541	19072	DP690-12	107.85	86.383			0.75948	0.90692	NaN	1	0	Median	36046000	20182000	15864000	9879	595	9296	19471	47535;47536;47537;47538	47538		4	9606
MDGIVPDIAVGTKR	1	1	Acetyl (Protein N-term);Oxidation (M)	1528.7919	0.79192806	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	1	1	1	10.7	4.99				1								1				1	17.732	17.732	2	1.3803E-05	12901	DP690-12	150.46	150.46			0.80221	0.85632	7.647	3	0	Plateau	337660000	180250000	157410000	9880	595	9297	19472;19473;19474	47539;47540;47541;47542;47543;47544;47545;47546;47547;47548	47542	792	10	9606
MDGIVPDIAVGTKR	1	1	Acetyl (Protein N-term)	1512.797	0.79701344	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	1	0	1	12	0												2					20.051	20.051	2	0.00045987	15805	DP690-12	92.247	59.247			0.75593	0.92422	3.2272	2	0	Median	127350000	68589000	58757000	9881	595	9297	19475;19476	47549;47550;47551;47552	47550		4	9606
MDGTYACSYTPVK	1	0	Oxidation (M)	1507.6323	0.63231588	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	10	0										1							13.743	13.743	2	1.4821E-10	7615	DP690-10	242.97	220.44			0.74661	0.92174	NaN	1	0	Median	122020000	69277000	52743000	9882	250	9298	19477	47553;47554;47555;47556	47554	246	4	9606
MDGTYACSYTPVK	1	0	Unmodified	1491.6374	0.63740126	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							14.509	14.509	2	4.7245E-05	8824	DP690-10	152.64	124.77			0.7785	0.96066	NaN	1	0	Median	105670000	62362000	43308000	9883	250	9298	19478	47557;47558;47559;47560	47558		4	9606
MDHTDNELQGTNSSGSLGGLDVR	0	1	Acetyl (Protein N-term);Oxidation (M)	2460.0823	0.082309019	1523	Q75N03	CBLL1	E3 ubiquitin-protein ligase Hakai	yes	yes	1	1	0	12	0												1					17.011	17.011	2	2.9747E-05	11815	DP690-12	133.86	107.33			NaN	NaN	NaN	0	0	Median	0	0	0	9884	1523	9299	19479	47561	47561	2203	1	9606
MDHTEGSPAEEPPAHAPSPGK	1	0	Acetyl (Protein N-term);Oxidation (M)	2198.9539	0.95386103	1125	Q06330	RBPJ	Recombining binding protein suppressor of hairless	yes	yes	1	1	0	12	0												2					11.317	11.317	3	0.034991	3972	DP690-12	54.658	32.757			NaN	NaN	NaN	0	0	Median	10597000	5744400	4852100	9885	1125	9300	19480;19481	47562;47563	47563	1748	2	9606
MDIDAPDVDVHGPDWHLK	1	0	Oxidation (M)	2074.9418	0.94183978	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9	0									1								16.43	16.43	4	0.00031289	10435	DP690-9	89.311	65.473			0.68656	0.85369	NaN	1	0	Median	23584000	13691000	9893100	9886	1145	9301	19482	47564;47565	47564	1789	2	9606
MDIDAPDVEVQGPDWHLK	1	0	Oxidation (M)	2079.9572	0.95715549	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9.5	0.5									1	1							17.766	17.766	3	3.0601E-05	12112	DP690-9	122.5	65.356			0.72217	0.90215	0.17989	2	0	Median	89046000	48216000	40830000	9887	1145	9302	19483;19484	47566;47567;47568;47569;47570;47571	47570	1790	6	9606
MDILKSEILR	1	1	Acetyl (Protein N-term)	1258.6955	0.69550848	1949	Q99633	PRPF18	Pre-mRNA-splicing factor 18	yes	yes	1	0	1	10	0										1							23.398	23.398	2	0.063786	21209	DP690-10	64.711	25.958			NaN	NaN	NaN	0	0	Median	0	0	0	9888	1949	9303	19485	47572	47572		1	9606
MDIRPNHTIYINNMNDK	1	1	Acetyl (Protein N-term);2 Oxidation (M)	2161.9885	0.9884724	421	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	1	2	1	15	0															1		13.698	13.698	3	0.0007164	6989	DP690-15	76.051	61.604			0.80098	0.91906	NaN	1	0	Median	34878000	19650000	15228000	9889	421	9304	19486	47573;47574;47575	47574	477;478	3	9606
MDKNASTFEDVTQVSSAYQK	2	0	Unmodified	2248.0318	0.031776998	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	1	11	0											1						16.099	16.099	3	0.00052293	11009	DP690-11	82.034	52.942			1.0337	1.1787	NaN	1	0	Median	125310000	64250000	61057000	9890	1267	9305	19487	47576;47577	47576		2	9606
MDKNASTFEDVTQVSSAYQK	2	0	Oxidation (M)	2264.0267	0.026691621	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	1	1	11	0											1						15.767	15.767	3	1.8358E-05	10490	DP690-11	135.81	91.234			NaN	NaN	NaN	0	0	Median	39635000	0	39635000	9891	1267	9305	19488	47578;47579;47580	47578	1937	3	9606
MDLAAAAEPGAGSQHLEVRDEVAEK	1	1	Acetyl (Protein N-term)	2635.2548	0.25479408	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	1	0	1	11	0											2						17.45	17.45	3	1.5962E-05	12911	DP690-11	110.91	89.145			NaN	NaN	NaN	0	0	Median	51897000	27081000	24816000	9892	1280	9306	19489;19490	47581;47582;47583	47581		3	9606
MDLAAAAEPGAGSQHLEVRDEVAEK	1	1	Acetyl (Protein N-term);Oxidation (M)	2651.2497	0.2497087	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	1	1	1	3	0			1														15.896	15.896	3	0.035641	9890	DP690-3	50.873	22.368			NaN	NaN	NaN	0	0	Median	3026700	3026700	0	9893	1280	9306	19491	47584	47584	1961	1	9606
MDLADLLTQNPELFR	0	1	Oxidation (M)	1790.8873	0.88728501	120	O14933	UBE2L6	Ubiquitin/ISG15-conjugating enzyme E2 L6	yes	yes	0	1	0	8	0								1									23.017	23.017	2	1.0103E-16	16808	DP690-8	274.53	274.53			0.65866	0.743	NaN	1	0	Median	14490000	8705100	5785200	9894	120	9307	19492	47585;47586;47587;47588;47589;47590;47591;47592;47593	47593	131	9	9606
MDLADLLTQNPELFRK	1	1	Oxidation (M)	1918.9822	0.98224803	120	O14933	UBE2L6	Ubiquitin/ISG15-conjugating enzyme E2 L6	yes	yes	0	1	1	8	0								2									20.555	20.555	2;3	1.2509E-06	14271	DP690-8	134.02	113.2			0.64459	0.74949	2.1023	2	0	Median	5492100	3276800	2215200	9895	120	9308	19493;19494	47594;47595;47596;47597;47598;47599	47597	131	6	9606
MDLEKPNYIVPDYMPVVYDK	2	0	2 Oxidation (M)	2460.1593	0.1592857	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	2	1	9	0									1								17.697	17.697	3	0.0030521	11969	DP690-9	62.617	49.814			1.3488	1.6316	NaN	1	0	Median	8278300	3430300	4848000	9896	1264	9309	19495	47600	47600	1917;1918	1	9606
MDLFGDLPEPER	0	1	Acetyl (Protein N-term);Oxidation (M)	1475.6602	0.66024519	2087	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	1	1	0	13	0													1				22.34	22.34	2	0.00016723	18274	DP690-13	115.18	92.104			0.79162	0.94097	NaN	1	0	Median	5490000	3239900	2250000	9897	2087	9310	19496	47601;47602;47603	47601	2600	3	9606
MDLLSGNFLK	1	0	Oxidation (M)	1152.5849	0.5848954	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	1	0	9	0									1								18.906	18.906	2	0.01551	13522	DP690-9	84.568	11.32			1.0134	1.2581	NaN	1	0	Median	4177700	2073900	2103900	9898	2272	9311	19497	47604	47604	2725	1	9606
MDLNSEQAEQLER	0	1	Oxidation (M)	1577.6991	0.69914989	1398	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	1	0	9	4					1								1				13.84	13.84	2	3.5438E-10	7047	DP690-13	265.77	213.05			0.85486	1.0101	NaN	1	0	Median	121170000	65241000	55930000	9899	1398	9312	19498;19499	47605;47606;47607;47608;47609	47606	2135	5	9606
MDLNSEQAEQLER	0	1	Unmodified	1561.7042	0.70423527	1398	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	13	0													1				15.346	15.346	2	2.2591E-08	9269	DP690-13	205.52	162.81			1.0939	1.3075	NaN	1	0	Median	97373000	50353000	47020000	9900	1398	9312	19500	47610;47611;47612;47613;47614	47612		5	9606
MDLSNNTMSLSVR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1540.6861	0.68614236	55	CON__Q99456;Q99456	KRT12	Keratin, type I cytoskeletal 12	yes	no	1	2	0	12	4.32						1								1		1	15.23	15.23	2	0.00049698	9093	DP690-14	91.867	36.466		+	0.76705	0.78276	24.304	3	0	Median	2567900000	1430700000	1137200000	9901	55	9313	19501;19502;19503	47615;47616;47617;47618;47619;47620	47615	59;60	6	9606
MDLVTYFGK	1	0	Unmodified	1072.5263	0.52631789	436	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	13	0													1				19.538	19.538	2	0.042496	14902	DP690-13	69.812	52.715			0.69866	0.80388	NaN	1	0	Median	13536000	7434900	6101200	9902	436	9314	19504	47621	47621		1	9606
MDMGNQHPSISR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1445.6027	0.60274709	2382	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	yes	yes	1	2	0	7.67	3.77					2								1				10.621	10.621	2	6.847E-05	2965	DP690-13	149.96	139.2			0.73207	0.90094	NaN	1	0	Median	24106000	13885000	10221000	9903	2382	9315	19505;19506;19507	47622;47623;47624;47625	47622	2807;2808	4	9606
MDNLSDTLKK	2	0	Acetyl (Protein N-term);Oxidation (M)	1221.5911	0.59110299	853	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	1	1	1	4	0				1													13.857	13.857	2	0.031906	7043	DP690-4	63.184	20.836			NaN	NaN	NaN	0	0	Median	0	0	0	9904	853	9316	19508	47626	47626	1295	1	9606
MDNLSSEEIQQR	0	1	Acetyl (Protein N-term);Oxidation (M)	1506.662	0.6620361	66	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	1	1	0	15	0															1		15.312	15.312	2	1.032E-08	9190	DP690-15	210.64	165.48			1.2929	1.5024	NaN	1	0	Median	23507000	10146000	13361000	9905	66	9317	19509	47627;47628;47629	47629	77	3	9606
MDNYADLSDTELTTLLR	0	1	Acetyl (Protein N-term);Oxidation (M)	2027.9358	0.93575135	817	P50402	EMD	Emerin	yes	yes	1	1	0	15	1														1		1	24.334	24.334	2	6.5312E-13	20813	DP690-14	201.09	177.98			0.8075	1.004	NaN	1	0	Median	8494300	4531800	3962500	9906	817	9318	19510;19511	47630;47631;47632;47633;47634	47631	1225	5	9606
MDNYADLSDTELTTLLR	0	1	Acetyl (Protein N-term)	2011.9408	0.94083673	817	P50402	EMD	Emerin	yes	yes	1	0	0	14	0														1			25.577	25.577	2	0.00010993	22263	DP690-14	144.27	107.09			0.65444	0.8157	NaN	1	0	Median	1611700	926910	684770	9907	817	9318	19512	47635;47636;47637;47638	47638		4	9606
MDPFTEK	1	0	Acetyl (Protein N-term);Oxidation (M)	924.38988	0.38988399	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	1	1	0	10	0										1							16.591	16.591	1	0.076223	11690	DP690-10	92.47	55.769			0.79812	0.98105	NaN	1	0	Median	42175000	23158000	19017000	9908	2190	9319	19513	47639	47639		1	9606
MDPFTEK	1	0	Acetyl (Protein N-term)	908.39497	0.39496937	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	1	0	0	10	0										1							19.53	19.53	1	0.040277	16189	DP690-10	60.682	44.538			0.7341	0.90226	NaN	1	0	Median	38165000	24124000	14041000	9909	2190	9319	19514	47640	47640		0	9606
MDPLFQQTHK	1	0	Acetyl (Protein N-term);Oxidation (M)	1301.6074	0.60742176	109	O14653	GOSR2	Golgi SNAP receptor complex member 2	yes	yes	1	1	0	15	0															1		15.336	15.336	2	0.0014092	9205	DP690-15	93.111	76.393			0.93625	1.0854	NaN	1	0	Median	46306000	22489000	23816000	9910	109	9320	19515	47641;47642	47641	120	2	9606
MDPMNIWDDIITNR	0	1	2 Oxidation (M)	1764.7811	0.78110538	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	9.5	0.5									1	1							21.494	21.494	2	6.917E-06	16536	DP690-9	179.35	161.22			0.73284	0.90941	5.2148	2	0	Median	74569000	42284000	32285000	9911	1046	9321	19516;19517	47643;47644;47645;47646;47647;47648;47649	47646	1620;1621	7	9606
MDPMNIWDDIITNR	0	1	Oxidation (M)	1748.7862	0.78619076	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.67	0.471									1	2							22.799	22.799	2	0.0015312	17897	DP690-9	101.89	65.303			0.68568	0.85856	32.613	3	0	Plateau	32074000	17795000	14279000	9912	1046	9321	19518;19519;19520	47650;47651;47652;47653;47654;47655;47656	47655	1620;1621	7	9606
MDPMNIWDDIITNR	0	1	Unmodified	1732.7913	0.79127614	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									2	2							24.393	24.393	2	1.832E-11	19860	DP690-9	186.46	139.62			0.76029	0.93495	NaN	1	0	Median	3777600	983640	2794000	9913	1046	9321	19521;19522;19523;19524	47657;47658;47659;47660;47661	47661		5	9606
MDPNTIIEALR	0	1	Acetyl (Protein N-term);Oxidation (M)	1329.6599	0.65985126	320	O95373	IPO7	Importin-7	yes	yes	1	1	0	3	0			1														22.245	22.245	2	0.023907	17785	DP690-3	59.426	39.819			1.2405	1.3528	NaN	1	0	Median	2794700	1305600	1489100	9914	320	9322	19525	47662;47663	47662	335	2	9606
MDQVMQFVEPSR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1539.6698	0.66976402	918	P60059	SEC61G	Protein transport protein Sec61 subunit gamma	yes	yes	1	2	0	16	0																1	18.105	18.105	2	2.8657E-05	12398	DP690-16	167.11	119.02			0.70446	0.81929	NaN	1	0	Median	21242000	12643000	8599200	9915	918	9323	19526	47664;47665;47666;47667;47668;47669	47666	1412;1413	6	9606
MDQVMQFVEPSR	0	1	Acetyl (Protein N-term);Oxidation (M)	1523.6748	0.6748494	918	P60059	SEC61G	Protein transport protein Sec61 subunit gamma	yes	yes	1	1	0	16	0																1	21.027	21.027	2	0.041561	15826	DP690-16	63.408	35.927			NaN	NaN	NaN	0	0	Median	0	0	0	9916	918	9323	19527	47670	47670	1412;1413	1	9606
MDQYFNQMEK	1	0	2 Oxidation (M)	1364.5377	0.53768721	1111	Q04637;O43432	EIF4G1;EIF4G3	Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3	yes	no	0	2	0	6	4		1								1							12.383	12.383	2	0.0045647	4640	DP690-2	94.409	64.091			1.0057	1.1111	30.819	2	0	Median	35946000	15848000	20098000	9917	1111	9324	19528;19529	47671;47672;47673;47674;47675;47676	47675	1723;1724	5	9606
MDSFFLAEMFK	1	0	Oxidation (M)	1380.6094	0.60939559	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	1	0	3	0			1														22.885	22.885	2	0.019189	18481	DP690-3	96.342	64.022			NaN	NaN	NaN	0	0	Median	1379000	0	1379000	9918	2061	9325	19530	47677	47677	2580	1	9606
MDSPGYNCFVDKDK	2	0	Acetyl (Protein N-term);Oxidation (M)	1732.7073	0.70727174	2391	Q9ULP9	TBC1D24	TBC1 domain family member 24	yes	yes	1	1	1	12	0												2					15.326	15.326	2	0.0020736	9572	DP690-12	103.43	72.704			0.50329	0.59172	NaN	1	0	Median	13615000	8220000	5395100	9919	2391	9326	19531;19532	47678;47679	47678	2822	1	9606
MDSTANEVEAVK	1	0	Oxidation (M)	1308.5867	0.5867459	402	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	1	0	4	0				1													12.094	12.094	2	0.00026156	4652	DP690-4	136.96	94.623			1.1103	1.2127	NaN	1	0	Median	18511000	8135800	10375000	9920	402	9327	19533	47680;47681	47681	434	2	9606
MDSTANEVEAVK	1	0	Unmodified	1292.5918	0.59183127	402	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	4	0				1													12.962	12.962	2	0.043665	5901	DP690-4	62.466	37.628			2.1516	2.3452	NaN	1	0	Median	10816000	3310000	7506200	9921	402	9327	19534	47682	47682		1	9606
MDSTEPPYSQK	1	0	Oxidation (M)	1297.5496	0.54963211	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	0	13	0													1				11.643	11.643	2	0.00015082	4202	DP690-13	152.06	129.82			0.70619	0.81695	NaN	1	0	Median	51605000	29065000	22540000	9922	1031	9328	19535	47683;47684;47685;47686	47684	1564	4	9606
MDSTEPPYSQK	1	0	Unmodified	1281.5547	0.55471749	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	13	0													3				11.596	11.596	2	3.7271E-08	4150	DP690-13	199.46	159.46			NaN	NaN	NaN	0	0	Median	0	0	0	9923	1031	9328	19536;19537;19538	47687;47688;47689	47688		3	9606
MDSTNADALYVR	0	1	Oxidation (M)	1370.6136	0.61362935	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	1	0	4	0				1													14.336	14.336	2	0.0096713	7732	DP690-4	103.26	40.673			NaN	NaN	NaN	0	0	Median	14266000	14266000	0	9924	1946	9329	19539	47690	47690	2478	1	9606
MDSTNADALYVR	0	1	Unmodified	1354.6187	0.61871473	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	4	0				1													15.196	15.196	2	0.0024476	8814	DP690-4	123.63	34.677			NaN	NaN	NaN	0	0	Median	0	0	0	9925	1946	9329	19540	47691	47691		1	9606
MDTDLETMDLDQGGEALAPR	0	1	2 Oxidation (M)	2208.9515	0.95147777	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	2	0	10	0										1							17.287	17.287	2	0.00010551	12828	DP690-10	163.33	126.94			NaN	NaN	NaN	0	0	Median	0	0	0	9926	269	9330	19541	47692	47692	273;274	1	9606
MDTDLETMDLDQGGEALAPR	0	1	Oxidation (M)	2192.9566	0.95656314	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	10	0										2							18.01	18.01	2	0.00030657	13822	DP690-10	145.61	119.08			NaN	NaN	NaN	0	0	Median	0	0	0	9927	269	9330	19542;19543	47693;47694	47693	273;274	2	9606
MDTDLETMDLDQGGEALAPR	0	1	Unmodified	2176.9616	0.96164852	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							19.572	19.572	2	0.027893	16094	DP690-10	115.68	64.732			NaN	NaN	NaN	0	0	Median	0	0	0	9928	269	9330	19544	47695	47695		1	9606
MDTIDQDDELIR	0	1	Oxidation (M)	1478.6559	0.65588809	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	1	0	2	0		1															16.022	16.022	2	5.2387E-10	8956	DP690-2	215.93	197.4			1.4137	1.4792	NaN	1	0	Median	7338300	3231900	4106400	9929	1803	9331	19545	47696;47697;47698;47699	47698	2378	4	9606
MDTQKDVQPPK	2	0	Acetyl (Protein N-term);Oxidation (M)	1343.6391	0.63911582	880	P53803	POLR2K	DNA-directed RNA polymerases I, II, and III subunit RPABC4	yes	yes	1	1	1	16	0																1	10.773	10.773	2	0.00024672	3327	DP690-16	163.66	138.04			0.6173	0.70978	NaN	1	0	Median	5362900	3224700	2138200	9930	880	9332	19546	47700;47701;47702	47702	1337	3	9606
MDVFLMIR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1097.5249	0.52493768	1328	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	1	2	0	8	0								1									21.74	21.74	2	0.030481	15427	DP690-8	67.981	19.225			NaN	NaN	NaN	0	0	Median	1138700	0	1138700	9931	1328	9333	19547	47703;47704	47704	2062;2063	2	9606
MDVHDLFR	0	1	Acetyl (Protein N-term);Oxidation (M)	1089.4913	0.49132937	2443	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	1	1	0	12	0												1					17.364	17.364	2	0.045032	12412	DP690-12	64.42	43.721			0.89122	1.0565	NaN	1	0	Median	44257000	22759000	21498000	9932	2443	9334	19548	47705	47705		0	9606
MDVHDLFR	0	1	Acetyl (Protein N-term)	1073.4964	0.49641475	2443	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	1	0	0	12	0												1					20.347	20.347	2	0.027932	16401	DP690-12	96.492	64.557			0.80839	0.963	NaN	1	0	Median	33185000	18618000	14566000	9933	2443	9334	19549	47706	47706		0	9606
MDVHITPGTHASEHAVNK	1	0	Oxidation (M)	1958.9269	0.92685842	2467	Q9Y3D0	FAM96B	Mitotic spindle-associated MMXD complex subunit MIP18	yes	yes	0	1	0	12	4								1								1	10.233	10.233	4	0.036537	2654	DP690-16	41.367	26.212			1.0238	1.1753	16.536	2	0	Median	21897000	10833000	11064000	9934	2467	9335	19550;19551	47707;47708	47707	2911	2	9606
MDVNVGDIDIEGPEGK	1	0	Oxidation (M)	1702.772	0.77198048	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9.5	0.5									1	1							17.672	17.672	2	2.4967E-07	13416	DP690-10	164.64	96.892			0.69943	0.87746	NaN	1	0	Median	80251000	73630000	6621100	9935	1145	9336	19552;19553	47709;47710;47711;47712	47709	1791	4	9606
MDVNVGDIDIEGPEGK	1	0	Unmodified	1686.7771	0.77706586	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							19.003	19.003	2	0.0032909	13680	DP690-9	80.706	63.04			0.5232	0.66524	NaN	1	0	Median	41560000	4953700	36606000	9936	1145	9336	19554;19555	47713;47714;47715	47714		3	9606
MDVTSCISYR	0	1	Oxidation (M)	1246.5322	0.5322079	2529	Q9Y6Y0	IVNS1ABP	Influenza virus NS1A-binding protein	yes	yes	0	1	0	4	0				1													14.068	14.068	2	0.0066409	7326	DP690-4	92.051	63.833			0.85404	0.99318	NaN	1	0	Median	15541000	8572700	6968500	9937	2529	9337	19556	47716	47716	2961	1	9606
MEAENLASVIDAR	0	1	Unmodified	1417.6871	0.68712864	1461	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	11	0											1						18.383	18.383	2	0.039593	14409	DP690-11	88.187	39.189			NaN	NaN	NaN	0	0	Median	32003000	32003000	0	9938	1461	9338	19557	47717	47717		1	9606
MECPHLSSSVCIAPDSAK	1	0	Acetyl (Protein N-term);Oxidation (M)	2045.8856	0.88564681	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	1	1	0	12	0												2					15.873	15.873	2	1.6797E-11	10135	DP690-12	169.04	150.07			0.89848	1.0709	NaN	1	0	Median	60772000	36207000	24565000	9939	2521	9339	19558;19559	47718;47719;47720;47721;47722	47718	2958	5	9606
MECPHLSSSVCIAPDSAK	1	0	Acetyl (Protein N-term)	2029.8907	0.89073219	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	1	0	0	12	0												2					17.382	17.382	2	6.3774E-05	12294	DP690-12	173.06	155.43			NaN	NaN	NaN	0	0	Median	0	0	0	9940	2521	9339	19560;19561	47723;47724	47723		2	9606
MECPSCQHVSKEETPK	2	0	Acetyl (Protein N-term);Oxidation (M)	2003.8387	0.83869662	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	1	1	1	9	0									2								10.387	10.387	3	0.00063654	2660	DP690-9	88.561	88.561			0.54517	0.66224	NaN	1	0	Median	7049800	4924300	2125600	9941	1453	9340	19562;19563	47725;47726	47725	2157	2	9606
MEDDKVAEAAIQIFR	1	1	Oxidation (M)	1750.856	0.85598488	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	1	1	10	0										1							19.307	19.307	3	0.0071314	15716	DP690-10	100.23	72.731			NaN	NaN	NaN	0	0	Median	26164000	26164000	0	9942	1377	9341	19564	47727;47728	47727	2123	2	9606
MEDDKVAEAAIQIFR	1	1	Unmodified	1734.8611	0.86107026	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	1	10	0										2							19.938	19.938	3	0.00023498	16643	DP690-10	141.06	108.35			NaN	NaN	NaN	0	0	Median	42824000	42824000	0	9943	1377	9341	19565;19566	47729;47730	47729		2	9606
MEDETQKELETMR	1	1	2 Oxidation (M)	1670.7128	0.71275105	784	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	2	1	6	0						1											10.978	10.978	3	0.024006	3429	DP690-6	54.276	30.787			0.96899	1.086	NaN	1	0	Median	11532000	6118900	5412800	9944	784	9342	19567	47731	47731	1166;1167	1	9606
MEDHQHVPIDIQTSK	1	0	Acetyl (Protein N-term);Oxidation (M)	1834.852	0.85196214	1883	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	1	1	0	12	0												1					13.554	13.554	3	0.0014104	6914	DP690-12	83.37	56.822			0.74724	0.85421	NaN	1	0	Median	137340000	76518000	60819000	9945	1883	9343	19568	47732;47733	47732	2433	2	9606
MEDSMDMDMSPLRPQNYLFGCELK	1	1	Acetyl (Protein N-term);Oxidation (M)	2964.2472	0.24720756	397	P06748	NPM1	Nucleophosmin	yes	yes	1	1	1	14	0														1			22.675	22.675	2	0.00073957	19045	DP690-14	96.773	94.631			0.79192	0.98349	NaN	1	0	Median	9373700	5407800	3965900	9946	397	9344	19569	47734;47735;47736	47736	425;426;427	3	9606
MEDSMDMDMSPLRPQNYLFGCELK	1	1	Acetyl (Protein N-term);2 Oxidation (M)	2980.2421	0.24212218	397	P06748	NPM1	Nucleophosmin	yes	yes	1	2	1	14	0														1			21.967	21.967	2	0.00045343	17961	DP690-14	102.39	84.432			NaN	NaN	NaN	0	0	Median	18992000	18992000	0	9947	397	9344	19570	47737;47738;47739;47740;47741	47740	425;426;427	5	9606
MEDSVGCLETAEEVK	1	0	Oxidation (M)	1711.7281	0.72806676	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															15.415	15.415	2	0.00042326	8260	DP690-2	114.82	101.01			1.1927	1.1781	NaN	1	0	Median	2747800	1134200	1613600	9948	668	9345	19571	47742;47743	47743	954	2	9606
MEDSVGCLETAEEVKR	1	1	Oxidation (M)	1867.8292	0.82917779	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	2	0		1															13.977	13.977	3	1.3397E-07	6512	DP690-2	156.2	138.4			1.0872	1.0702	NaN	1	0	Median	18616000	9439600	9176000	9949	668	9346	19572	47744;47745;47746	47745	954	3	9606
MEDSVGCLETAEEVKR	1	1	Unmodified	1851.8343	0.83426316	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		1															14.638	14.638	3	0.00025863	7308	DP690-2	113.43	113.43			1.2294	1.2103	NaN	1	0	Median	5614000	2260100	3353900	9950	668	9346	19573	47747;47748;47749	47747		3	9606
MEDYQAAEETAFVVDEVSNIVK	1	0	Acetyl (Protein N-term);Oxidation (M)	2544.1578	0.15776537	1017	P63172	DYNLT1	Dynein light chain Tctex-type 1	yes	yes	1	1	0	16	0																1	28.448	28.448	2	1.3293999999999998E-19	21212	DP690-16	185.74	175.75			0.74209	0.83849	NaN	1	0	Median	567780	353110	214670	9951	1017	9347	19574	47750;47751;47752;47753;47754	47750	1542	5	9606
MEEANIQPNR	0	1	Unmodified	1200.5557	0.55572054	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10.7	0.471										1	2						11.621	11.621	2	0.0007607	4688	DP690-10	111.17	65.832			0.81207	1.017	NaN	1	0	Median	71030000	49357000	21673000	9952	732	9348	19575;19576;19577	47755;47756;47757	47755		3	9606
MEEDPDDVPHGHITSLAVK	1	0	Oxidation (M)	2104.9735	0.97353384	718	P41227	NAA10	N-alpha-acetyltransferase 10	yes	yes	0	1	0	15	0															1		13.674	13.674	4	0.022058	7008	DP690-15	47.942	33.688			1.3257	1.5652	NaN	1	0	Median	28414000	9243200	19171000	9953	718	9349	19578	47758;47759	47759	1048	2	9606
MEEDQELERK	1	1	Acetyl (Protein N-term);Oxidation (M)	1363.5926	0.59255956	451	P0DPB6			yes	yes	1	1	1	16	0																2	12.026	12.026	2	2.2917E-05	4672	DP690-16	144.65	131.61			0.90924	1.0185	NaN	1	0	Median	20824000	10281000	10543000	9954	451	9350	19579;19580	47760;47761;47762;47763;47764;47765;47766	47761	519	7	9606
MEEEERLAEQQR	0	2	Oxidation (M)	1562.6995	0.69948424	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	9	0									1								10.625	10.625	3	0.017434	2933	DP690-9	61.213	24.766			0.87938	0.95321	NaN	1	0	Median	37068000	19109000	17959000	9955	1319	9351	19581	47767;47768	47767	2028	2	9606
MEEEERLAEQQR	0	2	Unmodified	1546.7046	0.70456962	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								11.684	11.684	3	0.050892	4273	DP690-9	50.452	30.758			0.94881	1.0285	NaN	1	0	Median	7898900	4294300	3604500	9956	1319	9351	19582	47769	47769		1	9606
MEEEGVKEAGEKPR	2	1	Acetyl (Protein N-term);Oxidation (M)	1645.7618	0.76175015	1719	Q8TD55	PLEKHO2	Pleckstrin homology domain-containing family O member 2	yes	yes	1	1	2	4	0				1													10.548	10.548	3	1.6284E-05	2909	DP690-4	124.42	124.42			0.75235	0.8163	NaN	1	0	Median	25111000	13674000	11438000	9957	1719	9352	19583	47770;47771	47770	2307	2	9606
MEEEIAALVIDNGSGMCK	1	0	Acetyl (Protein N-term);Oxidation (M)	2023.8901	0.89006348	1023	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	1	0	14	0														2			25.679	25.679	2	0.0012373	22277	DP690-14	119.69	88.8			NaN	NaN	NaN	0	0	Median	0	0	0	9958	1023	9353	19584;19585	47772;47773	47772	1552	2	9606
MEEFKDQLPADECNK	2	0	Oxidation (M)	1868.7921	0.792064	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	4	0				1													13.126	13.126	3	0.0013081	6027	DP690-4	83.292	63.056			2.3455	2.4208	NaN	1	0	Median	11531000	3308100	8223300	9959	695	9354	19586	47774;47775	47774	1012	2	9606
MEEKEDKHQQHK	3	0	Acetyl (Protein N-term)	1607.7362	0.7362041	1660	Q8N5S3	C2orf73	Uncharacterized protein C2orf73	yes	yes	1	0	2	9.92	4.25		1		1			1	1	2	1	1	1			1	2	17.702	17.702	2	0.0027095	13134	DP690-12	125.16	33.502			NaN	NaN	NaN	0	0	Median	705270000	705270000	0	9960	1660	9355	19587;19588;19589;19590;19591;19592;19593;19594;19595;19596;19597;19598	47776;47777;47778;47779;47780;47781;47782;47783;47784;47785;47786;47787;47788;47789;47790;47791;47792;47793;47794;47795;47796;47797;47798;47799	47779		24	9606
MEELDGEPTVTLIPGVNSK	1	0	Acetyl (Protein N-term);Oxidation (M)	2086.014	0.014001669	2025	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	1	1	0	12	0												1					21.721	21.721	2	8.9522E-07	18002	DP690-12	135.91	108.81			0.65649	0.7964	NaN	1	0	Median	5098300	2903300	2195000	9961	2025	9356	19599	47800;47801;47802;47803;47804	47801	2560	5	9606
MEEVPHDCPGADSAQAGR	0	1	Acetyl (Protein N-term);Oxidation (M)	1983.8051	0.8050883	872	P53384	NUBP1	Cytosolic Fe-S cluster assembly factor NUBP1	yes	yes	1	1	0	6	0						1											12.89	12.89	2	4.9635E-07	5512	DP690-6	140.33	119.54			0.7357	0.84333	NaN	1	0	Median	6965300	3819000	3146300	9962	872	9357	19600	47805;47806;47807;47808;47809	47808	1317	5	9606
MEFQAVVMAVGGGSR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1611.7385	0.73851229	2196	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	1	2	0	13	0													1				22.641	22.641	2	0.033496	18711	DP690-13	62.162	33.099			NaN	NaN	NaN	0	0	Median	1644600	1644600	0	9963	2196	9358	19601	47810	47810	2678;2679	1	9606
MEGDAVEAIVEESETFIK	1	0	Acetyl (Protein N-term);Oxidation (M)	2053.9402	0.94016802	799	P49711	CTCF	Transcriptional repressor CTCF	yes	yes	1	1	0	11	0											3						27.357	27.357	2	5.588E-08	25346	DP690-11	173.72	137.27			NaN	NaN	NaN	0	0	Median	0	0	0	9964	799	9359	19602;19603;19604	47811;47812;47813	47813	1209	3	9606
MEGGTENDLR	0	1	Unmodified	1120.4819	0.48188689	2039	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	11	0											1						11.096	11.096	2	0.044866	3686	DP690-11	90.15	40.727			NaN	NaN	NaN	0	0	Median	0	0	0	9965	2039	9360	19605	47814	47814		1	9606
MEGNGPAAVHYQPASPPR	0	1	Acetyl (Protein N-term);Oxidation (M)	1935.8897	0.88974463	1868	Q96HA8	WDYHV1	Protein N-terminal glutamine amidohydrolase	yes	yes	1	1	0	7	0							2										13.819	13.819	2	3.5808E-13	6843	DP690-7	178.22	133.06			NaN	NaN	NaN	0	0	Median	9917900	9917900	0	9966	1868	9361	19606;19607	47815;47816;47817	47815	2425	3	9606
MEGPLSVFGDR	0	1	Acetyl (Protein N-term);Oxidation (M)	1264.5758	0.57578728	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	1	0	9.33	3.77				1								2					21.81	21.81	2	0.0065228	16718	DP690-4	74.162	45.001			1.6997	1.9083	NaN	1	0	Median	1185500	431760	753770	9967	520	9362	19608;19609;19610	47818;47819;47820;47821	47820	667	4	9606
MEGPLSVFGDR	0	1	Acetyl (Protein N-term)	1248.5809	0.58087266	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	0	0	12	0												1					23.958	23.958	2	0.075922	20533	DP690-12	61.353	23.193			NaN	NaN	NaN	0	0	Median	0	0	0	9968	520	9362	19611	47822	47822		1	9606
MEGSEPVAAHQGEEASCSSWGTGSTNK	1	0	Acetyl (Protein N-term);Oxidation (M)	2851.1661	0.166115	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	1	1	0	3	0			2														14.257	14.257	2	1.2386E-15	7659	DP690-3	149.74	128.91			NaN	NaN	NaN	0	0	Median	2502100	2502100	0	9969	5	9363	19612;19613	47823;47824	47823	6	2	9606
MEGSGEQPGPQPQHPGDHR	0	1	Acetyl (Protein N-term);Oxidation (M)	2097.8923	0.89226382	2358	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	1	1	0	4	0				1													10.325	10.325	3	6.754E-05	2654	DP690-4	113.33	103.05			0.6217	0.68124	NaN	1	0	Median	51948000	32867000	19081000	9970	2358	9364	19614	47825;47826;47827;47828	47828	2792	4	9606
MEHFDASLSTYFK	1	0	Acetyl (Protein N-term);Oxidation (M)	1632.713	0.71300904	2265	Q9NYP7	ELOVL5	Elongation of very long chain fatty acids protein 5	yes	yes	1	1	0	9.5	0.5									1	1							19.847	19.847	2	2.7883E-05	14641	DP690-9	174.77	140.9			0.99028	1.2343	2.4061	2	0	Median	90798000	45842000	44956000	9971	2265	9365	19615;19616	47829;47830;47831	47831	2719	3	9606
MEHFDASLSTYFK	1	0	Acetyl (Protein N-term)	1616.7181	0.71809442	2265	Q9NYP7	ELOVL5	Elongation of very long chain fatty acids protein 5	yes	yes	1	0	0	9.5	0.5									1	1							21.592	21.592	2	0.00025827	16756	DP690-9	152.07	135.41			0.94532	1.1799	NaN	1	0	Median	4989700	2835000	2154700	9972	2265	9365	19617;19618	47832;47833;47834	47833		3	9606
MEHFLLEVAAAPLR	0	1	Acetyl (Protein N-term)	1637.8599	0.85994805	2217	Q9NU22	MDN1	Midasin	yes	yes	1	0	0	9	0									3								24.819	24.819	2	0.0043073	20384	DP690-9	103.34	56.081			0.91269	1.0652	NaN	1	0	Median	1058500	542210	516290	9973	2217	9366	19619;19620;19621	47835;47836;47837	47836		3	9606
MEICRGLR	0	2	Acetyl (Protein N-term);Oxidation (M)	1091.5216	0.52158364	527	P18510	IL1RN	Interleukin-1 receptor antagonist protein	yes	yes	1	1	1	7.07	0.249							14	1									23.372	23.372	2	0.017748	7139	DP690-7	84.359	57.47			NaN	NaN	NaN	0	0	Median	201660000	201660000	0	9974	527	9367	19622;19623;19624;19625;19626;19627;19628;19629;19630;19631;19632;19633;19634;19635;19636	47838;47839;47840;47841;47842;47843;47844;47845;47846;47847;47848;47849;47850;47851;47852;47853;47854;47855;47856;47857;47858;47859;47860;47861	47839	676	24	9606
MEISELNR	0	1	Oxidation (M)	1006.4753	0.47534495	49	CON__Q3TTY5			no	no	0	1	0	4	0				1													12.048	12.048	2	0.030838	4669	DP690-4	101.64	26.431		+	NaN	NaN	NaN	0	0	Median	6135600	6135600	0	9975	49	9368	19637	47862;47863	47863	58	2	
MELQEIQLK	1	0	Unmodified	1130.6005	0.60054547	398	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	0	15	0															1		17.107	17.107	2	0.00070003	11539	DP690-15	208.37	0			0.80883	0.92631	NaN	1	0	Median	62454000	34542000	27912000	9976	398	9369	19638	47864;47865;47866;47867	47865		4	9606
MELSAEYLR	0	1	Acetyl (Protein N-term);Oxidation (M)	1168.5434	0.54342452	2109	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	1	1	0	8	0								1									19.015	19.015	2	0.0079234	12571	DP690-8	80.438	52.913			0.94631	1.1216	NaN	1	0	Median	1532100	714810	817310	9977	2109	9370	19639	47868;47869	47869	2617	2	9606
MELSAEYLREK	1	1	Acetyl (Protein N-term);Oxidation (M)	1425.681	0.68098063	2109	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	1	1	1	8	0								1									16.555	16.555	2	0.066667	9811	DP690-8	49.5	17.171			NaN	NaN	NaN	0	0	Median	857540	0	857540	9978	2109	9371	19640	47870	47870	2617	1	9606
MELSDANLQTLTEYLK	1	0	Acetyl (Protein N-term);Oxidation (M)	1925.9292	0.92920941	892	P55060	CSE1L	Exportin-2	yes	yes	1	1	0	3	0			2														24.707	24.707	2	0.055703	20394	DP690-3	59.227	28.664			NaN	NaN	NaN	0	0	Median	0	0	0	9979	892	9372	19641;19642	47871;47872	47871	1362	2	9606
MELSDANLQTLTEYLKK	2	0	Acetyl (Protein N-term);Oxidation (M)	2054.0242	0.024172425	892	P55060	CSE1L	Exportin-2	yes	yes	1	1	1	3	0			1														22.11	22.11	2	3.3246E-23	17575	DP690-3	234.49	234.49			1.1645	1.2666	NaN	1	0	Median	11249000	5231300	6018000	9980	892	9373	19643	47873;47874;47875	47874	1362	3	9606
MELVQVLKR	1	1	Acetyl (Protein N-term);Oxidation (M)	1172.6587	0.65872905	2349	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	yes	yes	1	1	1	16	0																1	18.473	18.473	2	0.01058	12937	DP690-16	69.198	52.725			0.75611	0.89117	NaN	1	0	Median	5004600	2760300	2244300	9981	2349	9374	19644	47876;47877;47878	47877	2787	3	9606
MEMEKEFEQIDK	2	0	Acetyl (Protein N-term);2 Oxidation (M)	1629.6902	0.69022469	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	1	2	1	13	0													1				15.372	15.372	2	6.3157E-05	9208	DP690-13	117.95	106.38			0.87359	0.97432	NaN	1	0	Median	94986000	49792000	45194000	9982	521	9375	19645	47879;47880;47881;47882	47880	673;674	4	9606
MEMEKEFEQIDK	2	0	Acetyl (Protein N-term);Oxidation (M)	1613.6953	0.69531007	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	1	1	1	13	0													2				17.928	17.928	2	4.3685E-05	11316	DP690-13	140.63	116.34			0.73717	0.83124	8.2878	2	0	Median	91355000	48594000	42761000	9983	521	9375	19646;19647	47883;47884;47885;47886;47887;47888	47885	673;674	6	9606
MEMEMEQVFEMK	1	0	4 Oxidation (M)	1624.6129	0.61290235	1351	Q16181	SEPT7	Septin-7	yes	yes	0	4	0	13	0													1				13.158	13.158	2	2.899E-05	6144	DP690-13	169.21	169.21			0.89985	1.0391	NaN	1	0	Median	15303000	8297700	7004900	9984	1351	9376	19648	47889;47890;47891;47892	47889	2092;2093;2094;2095	4	9606
MENILSGNPLLNLTGPSQPQANFK	1	0	Oxidation (M)	2598.3112	0.31118674	2284	Q9P013	CWC15	Spliceosome-associated protein CWC15 homolog	yes	yes	0	1	0	15	0															1		21.576	21.576	2	8.1756E-12	16901	DP690-15	152.94	126.81			NaN	NaN	NaN	0	0	Median	865190	865190	0	9985	2284	9377	19649	47893;47894;47895;47896;47897	47894	2735	5	9606
MENQSENNDIDEVIIPTAPLYK	1	0	Oxidation (M)	2548.2003	0.20029889	1958	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	1	0	9	4					1								1				20.058	20.058	2	6.5414E-29	15489	DP690-13	218.34	165.3			0.78939	0.91217	NaN	1	0	Median	15686000	7080500	8605500	9986	1958	9378	19650;19651	47898;47899;47900	47898	2497	3	9606
MENQSENNDIDEVIIPTAPLYK	1	0	Unmodified	2532.2054	0.20538427	1958	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	13	0													1				20.341	20.341	2	1.5937E-08	15840	DP690-13	171.15	113.62			NaN	NaN	NaN	0	0	Median	0	0	0	9987	1958	9378	19652	47901	47901		1	9606
MENQVLTPHVYWAQR	0	1	Acetyl (Protein N-term);Oxidation (M)	1928.9203	0.92031648	2287	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	1	1	0	9.5	0.5									1	1							18.344	18.344	2	2.5842E-05	12743	DP690-9	155.47	116.46			1.2169	1.5242	NaN	1	0	Median	45000000	26118000	18882000	9988	2287	9379	19653;19654	47902;47903;47904;47905	47904	2737	4	9606
MEPAASSQAAVEELR	0	1	Oxidation (M)	1603.7512	0.75118546	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	1	0	13	0													3				14.566	14.566	2	1.5281E-16	8055	DP690-13	270.56	231.99			0.87126	1.0561	NaN	1	0	Median	58115000	29062000	29053000	9989	1823	9380	19655;19656;19657	47906;47907;47908;47909;47910	47907	2404	5	9606
MEPAASSQAAVEELR	0	1	Unmodified	1587.7563	0.75627084	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	13	0													1				15.542	15.542	2	1.2471E-06	9464	DP690-13	181.66	145.75			0.89805	1.0973	NaN	1	0	Median	36997000	17534000	19463000	9990	1823	9380	19658	47911;47912;47913;47914	47913		4	9606
MEPVGCCGECR	0	1	Acetyl (Protein N-term);Oxidation (M)	1411.4989	0.49887564	1693	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	1	1	0	6	0						1											12.771	12.771	2	0.00063875	5401	DP690-6	102.06	102.06			0.7861	0.89106	NaN	1	0	Median	4134300	2593800	1540500	9991	1693	9381	19659	47915;47916;47917	47917	2291	3	9606
MEQLSSANTR	0	1	Acetyl (Protein N-term);Oxidation (M)	1193.5347	0.53465075	628	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	1	1	0	6	0						1											12.789	12.789	2	0.070582	5423	DP690-6	47.706	29.099			0.80089	0.89979	NaN	1	0	Median	3035200	1835700	1199500	9992	628	9382	19660	47918	47918		1	9606
MEQSCEEEKEPEPQK	2	0	Acetyl (Protein N-term);Oxidation (M)	1934.7874	0.78737255	1594	Q86YH2	ZNF280B	Zinc finger protein 280B	yes	yes	1	1	1	12	0												1					10.74	10.74	2	9.4585E-16	3197	DP690-12	236.08	226.24			0.51651	0.60899	NaN	1	0	Median	15393000	8975200	6417600	9993	1594	9383	19661	47919;47920;47921	47919	2253	3	9606
MEQVNELKEK	2	0	Acetyl (Protein N-term);Oxidation (M)	1304.6282	0.62821678	642	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	1	1	4	0				1													12.928	12.928	2	8.1051E-05	5796	DP690-4	144.65	111.92			1.2231	1.2648	NaN	1	0	Median	15101000	6370800	8730200	9994	642	9384	19662	47922;47923;47924	47922	899	3	9606
MESALDQLK	1	0	Oxidation (M)	1049.5063	0.50631073	691	P37837	TALDO1	Transaldolase	yes	yes	0	1	0	7	0							1										14.857	14.857	2	0.033753	8072	DP690-7	89.55	10.434			NaN	NaN	NaN	0	0	Median	61917000	61917000	0	9995	691	9385	19663	47925;47926	47925	999	2	9606
MESPASSQPASMPQSK	1	0	Acetyl (Protein N-term);2 Oxidation (M)	1735.7393	0.73930015	755	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	1	2	0	6	0						1											11.198	11.198	2	0.00069625	3647	DP690-6	81.494	68.066			0.74931	0.81703	NaN	1	0	Median	1719500	975700	743750	9996	755	9386	19664	47927;47928;47929;47930	47927	1121;1122	4	9606
MESQLSASKPTGGLPETAR	1	1	Oxidation (M)	1974.9681	0.96805453	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	1	1	9.5	0.5									1	1							12.693	12.693	3	3.3346E-08	5420	DP690-9	144.17	115.07			0.54801	0.63559	NaN	1	0	Median	29907000	25090000	4817300	9997	2411	9387	19665;19666	47931;47932;47933;47934;47935	47932	2835	5	9606
MESQLSASKPTGGLPETAR	1	1	Unmodified	1958.9731	0.97313991	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	1	10	0										1							13.284	13.284	3	0.030931	6994	DP690-10	81.016	43.433			NaN	NaN	NaN	0	0	Median	19894000	0	19894000	9998	2411	9387	19667	47936;47937	47936		2	9606
MESSINHISQTVDIHK	1	0	Oxidation (M)	1853.8942	0.89416131	1636	Q8IZP0;Q9NYB9	ABI1;ABI2	Abl interactor 1;Abl interactor 2	yes	no	0	1	0	12	0												1					12.922	12.922	3	0.043802	6137	DP690-12	49.216	33.437			0.8252	0.98751	NaN	1	0	Median	32682000	20883000	11799000	9999	1636	9388	19668	47938	47938		1	9606
MESVFNHAIR	0	1	Oxidation (M)	1218.5815	0.58154136	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	1	0	3	0			1														12.888	12.888	3	0.0055609	5805	DP690-3	78.934	54.08			0.98801	1.1124	NaN	1	0	Median	31948000	16025000	15923000	10000	1531	9389	19669	47939;47940	47940	2212	2	9606
MESVFNHAIR	0	1	Unmodified	1202.5866	0.58662674	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	3	0			1														13.992	13.992	3	0.057855	7352	DP690-3	47.706	15.863			1.1584	1.3165	NaN	1	0	Median	11478000	5319000	6158900	10001	1531	9389	19670	47941	47941		1	9606
METEQPEETFPNTETNGEFGK	1	0	Acetyl (Protein N-term);Oxidation (M)	2472.0275	0.027479482	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	1	1	0	8	4				1								1					18.31	18.31	2	8.1335E-63	13480	DP690-12	330.9	330.9			0.7396	0.88404	NaN	1	0	Median	34474000	19388000	15086000	10002	959	9390	19671;19672	47942;47943;47944;47945;47946	47944	1476	5	9606
METEQPEETFPNTETNGEFGK	1	0	Acetyl (Protein N-term)	2456.0326	0.032564859	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	1	0	0	12	0												1					19.645	19.645	2	2.6891E-41	15382	DP690-12	254.1	254.1			0.82675	0.99395	NaN	1	0	Median	19206000	9256600	9949200	10003	959	9390	19673	47947;47948;47949;47950	47950		4	9606
METMASPGKDNYR	1	1	Acetyl (Protein N-term);2 Oxidation (M)	1572.6548	0.65484224	215	O60684	KPNA6	Importin subunit alpha-7	yes	yes	1	2	1	4	0				1													10.708	10.708	2	0.0047745	3185	DP690-4	69.01	47.547			0.80024	0.91269	NaN	1	0	Median	3307600	1732500	1575100	10004	215	9391	19674	47951	47951	221;222	1	9606
METQLQSIFEEVVK	1	0	Acetyl (Protein N-term);Oxidation (M)	1737.8495	0.84950252	2389	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	1	1	0	10	0										2							25.519	25.519	2	0.0057736	23709	DP690-10	92.112	64.34			NaN	NaN	NaN	0	0	Median	1198200	1198200	0	10005	2389	9392	19675;19676	47952;47953	47953	2819	2	9606
METTHSFGNPSISVSTQQPPK	1	0	Oxidation (M)	2288.0743	0.074310515	1806	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	1	0	4	0				2													13.883	13.883	3	0.0021515	7064	DP690-4	96.562	67.178			NaN	NaN	NaN	0	0	Median	5058400	5058400	0	10006	1806	9393	19677;19678	47954;47955	47954	2383	2	9606
METTHSFGNPSISVSTQQPPKK	2	0	Oxidation (M)	2416.1693	0.16927353	1806	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	1	1	4	0				1													12.614	12.614	4	0.000392	5413	DP690-4	78.418	68.77			0.70281	0.72666	NaN	1	0	Median	14823000	8839500	5983500	10007	1806	9394	19679	47956;47957;47958	47957	2383	3	9606
MEVKPPPGRPQPDSGR	1	2	Acetyl (Protein N-term);Oxidation (M)	1804.889	0.88901635	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	1	1	2	11.8	4.18						2								2	1	1	10.97	10.97	3	0.00051512	2847	DP690-14	86.641	69.756			0.48859	0.55435	14.177	5	0	Median	306600000	201040000	105560000	10008	848	9395	19680;19681;19682;19683;19684;19685	47959;47960;47961;47962;47963;47964;47965;47966;47967;47968;47969;47970	47959	1276	12	9606
MEVKPPPGRPQPDSGR	1	2	Acetyl (Protein N-term)	1788.8941	0.89410173	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	1	0	2	14	0														2			12.494	12.494	3	0.0099548	5257	DP690-14	57.288	31.961			0.48776	0.5546	6.4389	2	0	Median	286760000	177090000	109670000	10009	848	9395	19686;19687	47971;47972;47973	47972		3	9606
MEVQEQEEDISSLIR	0	1	Oxidation (M)	1820.8462	0.84620806	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	7.75	3.34		1							1	2							18.399	18.399	2	4.9805E-20	12800	DP690-9	295.26	192.74			0.94945	1.1708	21.023	3	0	Plateau	206620000	107050000	99576000	10010	1046	9396	19688;19689;19690;19691	47974;47975;47976;47977;47978;47979;47980;47981;47982;47983	47980	1618	10	9606
MEVQEQEEDISSLIR	0	1	Unmodified	1804.8513	0.85129344	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								19.38	19.38	2	1.1967E-06	14089	DP690-9	182.25	127.76			0.82145	1.0041	NaN	1	0	Median	26284000	14965000	11319000	10011	1046	9396	19692	47984;47985	47985		2	9606
MEYVHTKSLIYR	1	1	Oxidation (M)	1554.7864	0.78644876	1043	P78368	CSNK1G2	Casein kinase I isoform gamma-2	yes	yes	0	1	1	3.5	0.5			1	1													21.236	21.236	2	0.010633	16648	DP690-3	128.27	75.146			NaN	NaN	NaN	0	0	Median	31358000	31358000	0	10012	1043	9397	19693;19694	47986;47987;47988	47987	1573	3	9606
MFADDLHNLNKR	1	1	Oxidation (M)	1488.7143	0.71434645	1397	Q4U2R6	MRPL51	39S ribosomal protein L51, mitochondrial	yes	yes	0	1	1	16	0																1	12.922	12.922	3	0.0021377	5869	DP690-16	76.332	52.817			0.73904	0.82395	NaN	1	0	Median	23789000	12580000	11209000	10013	1397	9398	19695	47989	47989	2133	1	9606
MFEGEMASLTAILK	1	0	2 Oxidation (M)	1571.7575	0.75751639	2152	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	2	0	6	0						1											19.277	19.277	2	0.0040583	13229	DP690-6	88.803	53.092			0.83794	0.95146	NaN	1	0	Median	6651100	2787300	3863800	10014	2152	9399	19696	47990;47991;47992	47992	2637;2638	3	9606
MFEIVFEDPK	1	0	Oxidation (M)	1269.5951	0.59512574	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	1	0	2	0		2															18.968	18.968	2	0.013948	12398	DP690-2	106.68	55.624			NaN	NaN	NaN	0	0	Median	0	0	0	10015	408	9400	19697;19698	47993;47994	47994	449	2	9606
MFEIVFEDPKIPGEK	2	0	Oxidation (M)	1793.891	0.89097341	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	1	1	2	0		1															18.88	18.88	3	0.0026174	12295	DP690-2	74.649	52.284			0.86079	0.89361	NaN	1	0	Median	4186400	2123100	2063300	10016	408	9401	19699	47995;47996;47997;47998	47995	449	4	9606
MFFEDEKPALLSQIDAEFEK	2	0	Oxidation (M)	2402.1352	0.13517944	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	1	1	10	0										1							21.203	21.203	3	0.012495	18375	DP690-10	55.127	37.979			0.7414	0.94164	NaN	1	0	Median	45090000	25172000	19918000	10017	1240	9402	19700	47999	47999	1892	1	9606
MFGGPGTASR	0	1	Unmodified	979.45455	0.45454993	424	P08670	VIM	Vimentin	yes	yes	0	0	0	12.5	0.5												1	1				12.116	12.116	2	9.2244E-05	4646	DP690-13	151.44	131.96			0.76428	0.86957	NaN	1	0	Median	378350000	275200000	103160000	10018	424	9403	19701;19702	48000;48001;48002;48003;48004	48004		5	9606
MFGGPGTASRPSSSR	0	2	Unmodified	1493.7045	0.70451004	424	P08670	VIM	Vimentin	yes	yes	0	0	1	10.5	3.77				1								1	2				10.764	10.764	2;3	0.0010813	3057	DP690-13	110.39	52.789			0.88241	1.0282	47.939	4	0	Linear	816080000	469840000	346240000	10019	424	9404	19703;19704;19705;19706	48005;48006;48007;48008;48009;48010;48011;48012;48013;48014	48013		10	9606
MFGGPGTASRPSSSR	0	2	Oxidation (M)	1509.6994	0.69942466	424	P08670	VIM	Vimentin	yes	yes	0	1	1	12.7	3.84				1								1	2		1	2	10.325	10.325	2;3	0.0016369	2596	DP690-13	111.27	75.357			0.68785	0.72673	27.518	7	0	Median	711050000	419630000	291430000	10020	424	9404	19707;19708;19709;19710;19711;19712;19713	48015;48016;48017;48018;48019;48020;48021;48022;48023;48024;48025;48026;48027;48028	48018	487	11	9606
MFGIPVVVAVNAFK	1	0	Oxidation (M)	1506.8269	0.82685701	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	1	0	7.67	3.4			1						1		1						21.959	21.959	2	2.7575E-05	19126	DP690-11	127.4	108.13			0.81432	0.91301	9.4301	2	0	Median	153830000	82490000	71338000	10021	470	9405	19714;19715;19716	48029;48030;48031;48032;48033;48034;48035;48036;48037;48038;48039;48040;48041	48029	567	13	9606
MFGIPVVVAVNAFK	1	0	Unmodified	1490.8319	0.83194239	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	11	0											1						23.1	23.1	2	0.00019673	20707	DP690-11	117.53	98.263			0.88846	1.079	NaN	1	0	Median	81446000	41975000	39472000	10022	470	9405	19717	48042;48043;48044;48045	48045		4	9606
MFHGIPATPGIGAPGNKPELYEEVK	2	0	Acetyl (Protein N-term);Oxidation (M)	2709.3472	0.3472379	2366	Q9UK41	VPS28	Vacuolar protein sorting-associated protein 28 homolog	yes	yes	1	1	1	11	4							1								1		17.939	17.939	3	1.8776E-05	12607	DP690-15	124.1	100.41			0.59984	0.6636	12.451	2	0	Median	65635000	41172000	24463000	10023	2366	9406	19718;19719	48046;48047;48048;48049;48050;48051;48052;48053	48047	2800	8	9606
MFLGDAVDVFETR	0	1	Oxidation (M)	1514.7075	0.70752973	2021	Q9BVL2	NUPL1	Nucleoporin p58/p45	yes	yes	0	1	0	12	0												1					20.727	20.727	2	0.0058046	16846	DP690-12	88.441	74.632			0.76316	0.92895	NaN	1	0	Median	11311000	6280100	5031200	10024	2021	9407	19720	48054;48055	48054	2553	2	9606
MFLGDNAHLSIINEYLSQSYQK	1	0	Oxidation (M)	2586.2424	0.24243848	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	1	0	10	0										1							20.566	20.566	3	0.058882	17588	DP690-10	56.684	27.566			NaN	NaN	NaN	0	0	Median	17864000	17864000	0	10025	766	9408	19721	48056	48056		1	9606
MFLVNSFLK	1	0	Acetyl (Protein N-term);Oxidation (M)	1155.5998	0.59981719	373	P04632	CAPNS1	Calpain small subunit 1	yes	yes	1	1	0	7	0							2										24.861	24.861	1	2.4641E-06	20252	DP690-7	120.87	99.018			2.1878	2.3663	2.0245	2	0	Median	13681000	3525000	10156000	10026	373	9409	19722;19723	48057;48058;48059;48060;48061	48058	398	5	9606
MFLYNLTLQR	0	1	Oxidation (M)	1313.6802	0.68019277	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	0	10	0										1							18.922	18.922	2	0.039644	15263	DP690-10	72.928	48.898			0.67966	0.84573	NaN	1	0	Median	80249000	47409000	32840000	10027	1329	9410	19724	48062	48062	2064	1	9606
MFLYNLTLQR	0	1	Acetyl (Protein N-term)	1339.6958	0.69584284	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	1	0	0	10	0										1							24.595	24.595	2	0.0034136	22627	DP690-10	106.2	55.394			NaN	NaN	NaN	0	0	Median	520170	520170	0	10028	1329	9410	19725	48063	48063		1	9606
MFLYNLTLQR	0	1	Unmodified	1297.6853	0.68527815	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10	0										1							20.056	20.056	2	0.022671	16784	DP690-10	99.136	68.062			NaN	NaN	NaN	0	0	Median	0	0	0	10029	1329	9410	19726	48064	48064		1	9606
MFPDLESEFQAAISRK	1	1	Oxidation (M)	1883.9087	0.90874874	738	P43356	MAGEA2	Melanoma-associated antigen 2	yes	yes	0	1	1	12	0												1					12.911	12.911	3	0.041887	6047	DP690-12	41.495	10.455			0.88893	1.0439	NaN	1	0	Median	97706000	52289000	45417000	10030	738	9411	19727	48065	48065	1091	1	9606
MFQAAGAAQATPSHDAK	1	0	Acetyl (Protein N-term);Oxidation (M)	1758.7995	0.79953264	1994	Q9BT23	LIMD2	LIM domain-containing protein 2	yes	yes	1	1	0	16	0																1	13.23	13.23	2	4.4459E-18	6206	DP690-16	218.02	192.95			0.60263	0.70472	NaN	1	0	Median	6151200	2651100	3500100	10031	1994	9412	19728	48066;48067;48068;48069	48068	2532	4	9606
MFQLPVNNLGSLR	0	1	Acetyl (Protein N-term);Oxidation (M)	1545.7973	0.79734779	2104	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	1	1	0	10	0										1							22.586	22.586	2	0.029298	20174	DP690-10	70.685	34.725			NaN	NaN	NaN	0	0	Median	0	0	0	10032	2104	9413	19729	48070	48070	2615	1	9606
MFQQCLELPSQSR	0	1	Unmodified	1622.7545	0.7544967	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	11	0											1						17.048	17.048	2	0.00012182	12343	DP690-11	163.9	129.01			0.65644	0.78592	NaN	1	0	Median	54190000	36100000	18090000	10033	2437	9414	19730	48071;48072;48073;48074;48075	48073		5	9606
MFQQCLELPSQSR	0	1	Oxidation (M)	1638.7494	0.74941132	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	1	0	7	4			1								1						16.075	16.075	2	5.2723E-08	10156	DP690-3	202.31	164.61			0.72238	0.84528	13.417	2	0	Median	34840000	20717000	14123000	10034	2437	9414	19731;19732	48076;48077;48078;48079;48080	48079	2879	4	9606
MFSVESLER	0	1	Acetyl (Protein N-term);Oxidation (M)	1154.5278	0.52777445	1577	Q86VS8	HOOK3	Protein Hook homolog 3	yes	yes	1	1	0	4	0				1													23.84	23.84	2	0.041287	18713	DP690-4	64.803	19.085			NaN	NaN	NaN	0	0	Median	0	0	0	10035	1577	9415	19733	48081	48081	2244	1	9606
MFTEDQGVDDR	0	1	Oxidation (M)	1327.535	0.53504468	570	P23497	SP100	Nuclear autoantigen Sp-100	yes	yes	0	1	0	12	0												1					12.391	12.391	2	0.0093313	5327	DP690-12	108.67	74.281			NaN	NaN	NaN	0	0	Median	0	0	0	10036	570	9416	19734	48082	48082	758	1	9606
MFVLDEADEMLSR	0	1	2 Oxidation (M)	1586.6956	0.69564442	927;1266	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	2	0	13	0													1				17.754	17.754	2	3.6091E-05	12581	DP690-13	127.51	105.52			1.0108	1.1935	NaN	1	0	Median	122760000	62094000	60662000	10037	927;1266	9417	19735	48083;48084;48085	48085	1436;1437	3	9606
MFVLDEADEMLSR	0	1	Oxidation (M)	1570.7007	0.7007298	927;1266	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	1	0	13	0													1				19.204	19.204	2	0.00081763	14306	DP690-13	108.9	81.932			0.8785	1.0647	NaN	1	0	Median	58814000	26034000	32781000	10038	927;1266	9417	19736	48086;48087;48088	48086	1436;1437	3	9606
MFVLDEADEMLSR	0	1	Unmodified	1554.7058	0.70581517	927;1266	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	13	0													1				21.827	21.827	2	0.004303	17790	DP690-13	121.6	71.888			NaN	NaN	NaN	0	0	Median	4274200	4274200	0	10039	927;1266	9417	19737	48089;48090	48089		2	9606
MFYGNSDDIGVFLSK	1	0	Oxidation (M)	1707.7814	0.78142296	1125	Q06330	RBPJ	Recombining binding protein suppressor of hairless	yes	yes	0	1	0	12	0												1					19.997	19.997	2	0.0025509	15823	DP690-12	124.86	89.969			NaN	NaN	NaN	0	0	Median	6150800	0	6150800	10040	1125	9418	19738	48091	48091	1749	1	9606
MFYGNSDDIGVFLSK	1	0	Unmodified	1691.7865	0.78650834	1125	Q06330	RBPJ	Recombining binding protein suppressor of hairless	yes	yes	0	0	0	12	0												1					20.856	20.856	2	0.034653	16934	DP690-12	94.402	53.322			NaN	NaN	NaN	0	0	Median	0	0	0	10041	1125	9418	19739	48092	48092		1	9606
MGAGMGFGLER	0	1	2 Oxidation (M)	1156.5005	0.50051385	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	11	0											1						13.901	13.901	2	0.085632	7780	DP690-11	58.592	39.498			0.7509	0.90491	NaN	1	0	Median	83005000	45604000	37401000	10042	849	9419	19740	48093	48093		1	9606
MGCPELQIGEASITSLK	1	0	Oxidation (M)	1848.8961	0.89613514	1926	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	1	0	12	0												1					18.932	18.932	2	0.029274	14524	DP690-12	64.224	42.829			0.83032	1.0078	NaN	1	0	Median	10668000	6169500	4498900	10043	1926	9420	19741	48094	48094	2457	1	9606
MGDADYLAAWHR	0	1	Oxidation (M)	1420.6194	0.61938343	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	1	0	3	0			1														16.172	16.172	3	0.002478	10164	DP690-3	83.182	19.774			0.84018	0.85839	NaN	1	0	Median	202100000	107050000	95058000	10044	2316	9421	19742	48095;48096;48097	48096	2762	3	9606
MGDADYLAAWHR	0	1	Unmodified	1404.6245	0.62446881	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	3	0			1														16.884	16.884	3	0.00011411	11090	DP690-3	134.3	124.53			0.78837	0.85201	NaN	1	0	Median	69502000	38570000	30932000	10045	2316	9421	19743	48098;48099;48100;48101	48099		4	9606
MGDPERPEAAGLDQDER	0	2	Acetyl (Protein N-term);Oxidation (M)	1942.8327	0.83268326	1535	Q7LG56	RRM2B	Ribonucleoside-diphosphate reductase subunit M2 B	yes	yes	1	1	1	6	0						1											13.808	13.808	2	0.03317	6708	DP690-6	66.326	35.141			NaN	NaN	NaN	0	0	Median	0	0	0	10046	1535	9422	19744	48102	48102	2217	1	9606
MGEELSQAATSESQQR	0	1	Oxidation (M)	1766.7741	0.77410575	1598	Q8IUG5	MYO18B	Unconventional myosin-XVIIIb	yes	yes	0	1	0	10	0										1							12.677	12.677	2	0.042568	6122	DP690-10	90.731	51.709			NaN	NaN	NaN	0	0	Median	0	0	0	10047	1598	9423	19745	48103	48103	2257	1	9606
MGESDDSILR	0	1	Unmodified	1121.5023	0.50228798	1020	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	0	0	16	0																1	14.546	14.546	2	9.8981E-05	7951	DP690-16	144.09	101.09			0.88057	0.99556	NaN	1	0	Median	48071000	25513000	22558000	10048	1020	9424	19746	48104;48105;48106;48107	48107		4	9606
MGESDDSILR	0	1	Oxidation (M)	1137.4972	0.49720261	1020	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	1	0	8	0								1									13.261	13.261	2	7.7541E-05	6158	DP690-8	184.49	136.32			0.92284	1.0484	NaN	1	0	Median	12418000	6331500	6086500	10049	1020	9424	19747	48108;48109;48110;48111	48108	1546	4	9606
MGFTEVTPVTGASLR	0	1	Oxidation (M)	1580.7868	0.78684269	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	10	1									1		1						16.796	16.796	2	3.6715E-15	12023	DP690-11	247.79	247.79			0.77322	0.92367	3.532	2	0	Median	223830000	126180000	97655000	10050	897	9425	19748;19749	48112;48113;48114;48115;48116;48117;48118;48119	48114	1391	8	9606
MGFTEVTPVTGASLR	0	1	Unmodified	1564.7919	0.79192807	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											2						18.11	18.11	2	7.6683E-06	13799	DP690-11	187.31	131.3			NaN	NaN	NaN	0	0	Median	0	0	0	10051	897	9425	19750;19751	48120;48121	48120		2	9606
MGGFGSIIQLYPGGGPVR	0	1	Oxidation (M)	1820.9243	0.92433922	2358	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	1	0	4	0				1													20.472	20.472	2	6.5736E-06	15203	DP690-4	130.56	110.25			0.86535	1.0001	NaN	1	0	Median	3722700	2097100	1625600	10052	2358	9426	19752	48122;48123;48124;48125	48122	2793	4	9606
MGGGGAMNMGDPYGSGGQK	1	0	2 Oxidation (M)	1802.7022	0.70220313	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	2	0	11	0											2						10.782	10.782	2	0.03099	3291	DP690-11	79.875	48.986			NaN	NaN	NaN	0	0	Median	9922000	9922000	0	10053	566	9427	19753;19754	48126;48127	48126	747;748;749	2	9606
MGGGGAMNMGDPYGSGGQK	1	0	Oxidation (M)	1786.7073	0.70728851	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	0	11	0											1						13.806	13.806	2	0.036	7645	DP690-11	90.689	65.347			NaN	NaN	NaN	0	0	Median	0	0	0	10054	566	9427	19755	48128	48128	747;748;749	1	9606
MGGGSIEVSVPR	0	1	Oxidation (M)	1203.5918	0.59177169	1875	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	1	0	12	0												1					14.235	14.235	2	0.065246	7964	DP690-12	64.103	29.917			0.78271	0.93305	NaN	1	0	Median	32253000	16259000	15995000	10055	1875	9428	19756	48129	48129		1	9606
MGGMEGPFGGGMENMGR	0	1	4 Oxidation (M)	1777.6528	0.6528101	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	4	0	11	0											1						12.6	12.6	2	0.034575	5850	DP690-11	63.966	55.861			NaN	NaN	NaN	0	0	Median	0	0	0	10056	849	9429	19757	48130	48130	1281;1282;1283;1284	1	9606
MGGRGGDR	0	2	Oxidation (M)	820.36098	0.3609839	1090	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	1	1	6	0						1											17.382	17.382	1	0.060709	10974	DP690-6	53.554	18.73			NaN	NaN	NaN	0	0	Median	25060000	25060000	0	10057	1090	9430	19758	48131	48131		1	9606
MGITEYNNQCR	0	1	Oxidation (M)	1400.5813	0.58128336	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	6.5	3.5			1							1							11.686	11.686	2	0.016907	4176	DP690-3	78.113	55.774			0.66245	0.77689	14.268	2	0	Median	22419000	11902000	10517000	10058	721	9431	19759;19760	48132;48133;48134;48135;48136	48135	1059	5	9606
MGIVGPEFK	1	0	Oxidation (M)	992.5001	0.50010314	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9	0									1								14.684	14.684	2	0.028544	8044	DP690-9	82.279	53.13			0.84104	1.0185	NaN	1	0	Median	34746000	19222000	15524000	10059	1319	9432	19761	48137;48138;48139	48139	2029	3	9606
MGIVGPEFKDK	2	0	Unmodified	1219.6271	0.62709457	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0										1							14.109	14.109	3	0.015937	8206	DP690-10	65.695	39.022			0.82918	1.056	NaN	1	0	Median	61701000	26955000	34746000	10060	1319	9433	19762	48140	48140		1	9606
MGLAMGGGGGASFDR	0	1	2 Oxidation (M)	1414.5969	0.59693343	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	11.8	2.17									1		1	1			1		12.907	12.907	2	1.5842E-05	6457	DP690-11	127.37	116.22			0.79776	0.96341	10.599	3	0	Plateau	138320000	79488000	58831000	10061	849	9434	19763;19764;19765;19766	48141;48142;48143;48144;48145;48146;48147;48148;48149;48150;48151	48145	1285;1286	11	9606
MGLAMGGGGGASFDR	0	1	Oxidation (M)	1398.602	0.6020188	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	11	0											1						14.358	14.358	2	0.00042497	8457	DP690-11	114.76	86.85			0.95742	1.154	NaN	1	0	Median	84222000	44148000	40074000	10062	849	9434	19767	48152;48153;48154;48155	48153	1285;1286	4	9606
MGLIQTADQLR	0	1	Unmodified	1244.6547	0.6547063	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	13	0													1				17.212	17.212	2	9.8828E-05	11827	DP690-13	133.13	93.133			0.87438	1.0306	NaN	1	0	Median	126970000	66819000	60147000	10063	521	9435	19768	48156;48157;48158	48157		3	9606
MGPAMGPALGAGIER	0	1	Unmodified	1426.7061	0.70608995	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11	0											1						16.782	16.782	2	0.00088394	12079	DP690-11	100.09	55.064			0.79069	0.95408	NaN	1	0	Median	90531000	51083000	39449000	10064	849	9436	19769	48159;48160;48161	48160		3	9606
MGPAMGPALGAGIER	0	1	Oxidation (M)	1442.701	0.70100457	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	11	0											2						15.488	15.488	2	0.018227	10643	DP690-11	92.112	54.512			NaN	NaN	NaN	0	0	Median	112270000	112270000	0	10065	849	9436	19770;19771	48162;48163	48163	1287;1288	2	9606
MGPLGLDHMASSIER	0	1	Unmodified	1612.7701	0.77014677	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11	0											1						17.165	17.165	3	0.00092556	12566	DP690-11	86.738	64.132			0.70973	0.82495	NaN	1	0	Median	167630000	96826000	70801000	10066	849	9437	19772	48164	48164		1	9606
MGQAPSQSLLPPAQDQPR	0	1	Oxidation (M)	1935.9473	0.94725951	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	1	0	9	0									1								14.762	14.762	2	0.02013	8187	DP690-9	101.62	64.198			NaN	NaN	NaN	0	0	Median	0	0	0	10067	2422	9438	19773	48165	48165	2853	1	9606
MGQLGLGNQTDAVPSPAQIMYNGQPITK	1	0	2 Oxidation (M)	2960.4372	0.43719189	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	2	0	12.3	0.471												2	1				18.365	18.365	2;3	3.2576E-17	13576	DP690-12	169.72	169.72			0.69997	0.83879	12.626	3	0	Median	69528000	38007000	31521000	10068	2298	9439	19774;19775;19776	48166;48167;48168;48169;48170;48171;48172;48173;48174;48175;48176	48166	2750;2751	11	9606
MGQLGLGNQTDAVPSPAQIMYNGQPITK	1	0	Oxidation (M)	2944.4423	0.44227727	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	1	0	12	0												2					19.328	19.328	2	4.8317E-08	15459	DP690-12	141.6	88.955			1.1247	1.3656	NaN	1	0	Median	12276000	8894600	3381000	10069	2298	9439	19777;19778	48177;48178;48179;48180;48181	48177	2750;2751	5	9606
MGQMAMGGAMGINNR	0	1	3 Oxidation (M)	1585.6469	0.64693686	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	3	0	12	0												1					10.462	10.462	2	0.00019045	2826	DP690-12	121.6	100.83			0.83536	0.9814	NaN	1	0	Median	89578000	48870000	40709000	10070	1322	9440	19779	48182;48183;48184	48182	2044;2045;2046	3	9606
MGQMAMGGAMGINNR	0	1	2 Oxidation (M)	1569.652	0.65202224	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	2	0	12	0												1					11.874	11.874	2	0.0025544	4647	DP690-12	90.685	64.171			0.77166	0.93377	NaN	1	0	Median	15435000	7557700	7877100	10071	1322	9440	19780	48185;48186	48186	2044;2045;2046	2	9606
MGVSLIHLK	1	0	Oxidation (M)	1012.5739	0.57393679	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	1	0	3	0			1														14.023	14.023	2	0.026666	7395	DP690-3	94.114	58.759			NaN	NaN	NaN	0	0	Median	15441000	0	15441000	10072	2061	9441	19781	48187	48187	2581	1	9606
MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGR	1	1	Oxidation (M)	3519.782	0.78203867	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	1	7	0							1										20.507	20.507	4	3.6123E-08	15120	DP690-7	99.29	84.586			0.52684	0.55528	NaN	1	0	Median	59850000	37006000	22845000	10073	557	9442	19782	48188;48189;48190;48191;48192	48188	720	5	9606
MHAPPINMESVHMK	1	0	3 Oxidation (M)	1668.7422	0.74221746	775	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	3	0	4	0				1													10.194	10.194	3	0.00028823	2487	DP690-4	97.463	62.643			3.8335	4.1122	NaN	1	0	Median	4539700	917610	3622100	10074	775	9443	19783	48193;48194	48194	1152;1153;1154	2	9606
MHDLNTDQENLVGTHDAPIR	0	1	Oxidation (M)	2291.0601	0.060057435	185	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	1	0	14.3	0.471														2	1		13.614	13.614	3;4	1.3542E-14	6913	DP690-14	192.22	160.92			0.79142	0.86663	10.519	3	0	Plateau	1130300000	622220000	508110000	10075	185	9444	19784;19785;19786	48195;48196;48197;48198;48199;48200;48201;48202;48203;48204;48205;48206	48198	198	12	9606
MHDLNTDQENLVGTHDAPIR	0	1	Unmodified	2275.0651	0.065142812	185	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	14	0														1			14.148	14.148	3	3.4241E-18	7665	DP690-14	206.8	176.65			0.74468	0.84918	NaN	1	0	Median	265000000	142720000	122270000	10076	185	9444	19787	48207;48208;48209	48207		3	9606
MHGGGPSVTAGVPLKK	2	0	Oxidation (M)	1550.8239	0.8238969	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	1	1	6.5	3.57			2						1		1						10.526	10.526	3	0.00055125	3010	DP690-11	86.498	66.219			0.70932	0.81117	10.347	2	0	Median	497360000	277700000	219660000	10077	1504	9445	19788;19789;19790;19791	48210;48211;48212;48213	48210	2188	4	9606
MHGGGPSVTAGVPLKK	2	0	Unmodified	1534.829	0.82898227	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	1	11	0											1						11.051	11.051	3	0.0023457	3602	DP690-11	78.508	42.4			NaN	NaN	NaN	0	0	Median	72770000	72770000	0	10078	1504	9445	19792	48214;48215;48216	48214		3	9606
MHGGGPTVTAGLPLPK	1	0	Unmodified	1531.8181	0.81808324	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	11	0											2						15.148	15.148	2;3	0.00035876	9474	DP690-11	92.939	67.208			0.76535	0.88366	4.9316	2	0	Median	350820000	205770000	145050000	10079	470	9446	19793;19794	48217;48218;48219;48220	48217		4	9606
MHGGGPTVTAGLPLPK	1	0	Oxidation (M)	1547.813	0.81299786	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	1	0	11	0											1						14.774	14.774	3	0.045288	9585	DP690-11	53.946	27.298			0.71755	0.79992	NaN	1	0	Median	248960000	138180000	110780000	10080	470	9446	19795	48221	48221		0	9606
MHHGTGPQNVQHQLQR	0	1	Acetyl (Protein N-term);Oxidation (M)	1924.9075	0.90746038	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	1	1	0	11	2									1				1				10.299	10.299	4	6.4892E-06	2500	DP690-9	126.09	105.12			0.76653	0.93541	12.077	2	0	Median	40315000	21468000	18847000	10081	1891	9447	19796;19797	48222;48223;48224;48225;48226	48224	2438	4	9606
MHLYLGAAK	1	0	Oxidation (M)	1018.527	0.52698659	1179	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	1	0	2	0		1															11.048	11.048	2	0.0076406	3260	DP690-2	114.72	84.403			NaN	NaN	NaN	0	0	Median	2664100	0	2664100	10082	1179	9448	19798	48227;48228	48228	1827	2	9606
MHNQIPQVTSDGKR	1	1	Unmodified	1609.7995	0.79947306	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	1	11	0											1						10.563	10.563	3	0.0060319	2958	DP690-11	81.789	53.644			NaN	NaN	NaN	0	0	Median	191310000	191310000	0	10083	1768	9449	19799	48229	48229		1	9606
MHNQIPQVTSDGKR	1	1	Oxidation (M)	1625.7944	0.79438768	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	1	1	8.33	3.77			1								2						10.392	10.392	3	0.015783	2720	DP690-11	81.904	42.173			0.80184	0.88931	NaN	1	0	Median	22058000	15628000	6430000	10084	1768	9449	19800;19801;19802	48230;48231;48232	48230	2333	3	9606
MHSLATAAPVPTTLAQVDR	0	1	Acetyl (Protein N-term);Oxidation (M)	2036.0361	0.036074515	1780	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	1	1	0	15	0															1		17.788	17.788	2	0.0024408	12417	DP690-15	103.14	60.338			NaN	NaN	NaN	0	0	Median	0	0	0	10085	1780	9450	19803	48233	48233	2343	1	9606
MIAGQVLDINLAAEPK	1	0	Oxidation (M)	1697.9022	0.9022068	410	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	1	0	11.3	3.77						1								2			19.161	19.161	2	4.5173E-07	14072	DP690-14	169.09	123.2			1.0017	1.1812	28.235	2	0	Median	282190000	152280000	129910000	10086	410	9451	19804;19805;19806	48234;48235;48236;48237;48238;48239	48237	453	6	9606
MIAGQVLDINLAAEPK	1	0	Unmodified	1681.9073	0.90729217	410	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	14	0														1			19.767	19.767	2	3.2424E-10	15207	DP690-14	195.71	195.71			0.77276	0.89958	NaN	1	0	Median	207110000	110640000	96477000	10087	410	9451	19807	48240;48241;48242;48243	48240		4	9606
MIASHLLAYFFTELNHDQVQK	1	0	Acetyl (Protein N-term);Oxidation (M)	2562.2577	0.25769461	861	P52789	HK2	Hexokinase-2	yes	yes	1	1	0	11	0											1						25.758	25.758	3	0.00048291	23700	DP690-11	87.24	64.603			1.1582	1.4052	NaN	1	0	Median	5772500	2665800	3106700	10088	861	9452	19808	48244;48245	48245	1305	2	9606
MICQQVEAIKK	2	0	Oxidation (M)	1362.6999	0.69994194	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	1	1	9	0									1								11.47	11.47	3	0.048066	3870	DP690-9	43.958	20.946			0.80339	0.97594	NaN	1	0	Median	7044300	4256300	2788100	10089	808	9453	19809	48246	48246		1	9606
MIDLIIPR	0	1	Oxidation (M)	985.56304	0.56303775	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	1	0	10.5	0.866									1		3						17.986	17.986	2	0.037225	13670	DP690-11	117.93	73.242			NaN	NaN	NaN	0	0	Median	4933000	4933000	0	10090	891	9454	19810;19811;19812;19813	48247;48248;48249;48250	48247	1355	4	9606
MIDLIIPR	0	1	Unmodified	969.56812	0.56812313	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						19.24	19.24	2	0.0078975	15408	DP690-11	175.75	57.743			0.78473	0.88801	NaN	1	0	Median	236960000	127140000	109820000	10091	891	9454	19814	48251	48251		0	9606
MIDLSGNPVLR	0	1	Oxidation (M)	1229.6438	0.64380726	110	O14735	CDIPT	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	yes	yes	0	1	0	16	0																1	16.884	16.884	2	0.015098	11006	DP690-16	80.231	47.911			0.8335	0.9694	NaN	1	0	Median	12915000	6479700	6435000	10092	110	9455	19815	48252	48252	121	1	9606
MIETAQVDER	0	1	Oxidation (M)	1206.5551	0.55505184	2383	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	1	0	15	0															1		11.297	11.297	2	5.3052E-16	3935	DP690-15	201.07	140.6			NaN	NaN	NaN	0	0	Median	58230000	0	58230000	10093	2383	9456	19816	48253;48254;48255;48256	48255	2809	4	9606
MIETAQVDER	0	1	Unmodified	1190.5601	0.56013721	2383	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	15	0															2		12.57	12.57	2	0.028913	5437	DP690-15	94.692	46.843			NaN	NaN	NaN	0	0	Median	0	0	0	10094	2383	9456	19817;19818	48257;48258	48257		2	9606
MIKPFFHSLSEK	2	0	Oxidation (M)	1478.7592	0.75917137	459	P10599	TXN	Thioredoxin	yes	yes	0	1	1	14	3.46								1								3	13.641	13.641	3	0.00013043	6642	DP690-8	116.84	81.341			0.82631	0.92942	22.581	2	0	Median	134780000	72429000	62353000	10095	459	9457	19819;19820;19821;19822	48259;48260;48261;48262;48263;48264;48265;48266;48267;48268	48265	527	10	9606
MIKPFFHSLSEK	2	0	Unmodified	1462.7643	0.76425675	459	P10599	TXN	Thioredoxin	yes	yes	0	0	1	8	0								2									14.327	14.327	3;4	0.0083349	7290	DP690-8	71.153	25.09			0.49858	0.57101	NaN	1	0	Median	19201000	11609000	7592900	10096	459	9457	19823;19824	48269;48270;48271	48269		3	9606
MILFAFGSALAQAR	0	1	Unmodified	1494.8017	0.80170489	2056	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	14	0														1			22.453	22.453	2	0.019684	18729	DP690-14	96.342	52.9			NaN	NaN	NaN	0	0	Median	1542600	0	1542600	10097	2056	9458	19825	48272	48272		1	9606
MILIQDGSQNTNVDKPLR	1	1	Oxidation (M)	2057.0575	0.057538239	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	1	1	7	4			1								1						14.231	14.231	3	2.5521E-10	7586	DP690-3	156.72	108.5			0.86098	0.97353	10.14	2	0	Median	157320000	82680000	74640000	10098	1798	9459	19826;19827	48273;48274;48275;48276	48276	2375	4	9606
MILIQDGSQNTNVDKPLR	1	1	Unmodified	2041.0626	0.062623617	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	1	11	0											2						15.429	15.429	3	1.4734E-06	10017	DP690-11	131.61	131.61			1.0137	1.1615	NaN	1	0	Median	275580000	75425000	200150000	10099	1798	9459	19828;19829	48277;48278;48279	48277		3	9606
MILIYLLPVK	1	0	Oxidation (M)	1217.7458	0.74575314	1421	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	1	0	10	4						1								1			21.359	21.359	2	0.0061442	15530	DP690-6	92.47	81.662			0.88358	1.0018	24.835	2	0	Median	10762000	5986200	4775900	10100	1421	9460	19830;19831	48280;48281;48282;48283	48282	2146	4	9606
MILIYLLPVK	1	0	Unmodified	1201.7508	0.75083852	1421	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	14	0														1			22.748	22.748	2	0.00027129	19028	DP690-14	125.25	111.05			0.82733	0.98066	NaN	1	0	Median	13132000	7007600	6123900	10101	1421	9460	19832	48284;48285;48286;48287	48286		4	9606
MILLEVNNR	0	1	Unmodified	1100.6012	0.60121417	139	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	14	0														1			16.941	16.941	2	0.017252	11619	DP690-14	82.241	39.117			1.1282	1.3661	NaN	1	0	Median	43617000	21353000	22264000	10102	139	9461	19833	48288;48289;48290	48289		3	9606
MIQDGKGDVTITNDGATILK	2	0	Oxidation (M)	2105.0674	0.067434223	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	1	1	4	0				1													15.411	15.411	3	2.9414E-12	9109	DP690-4	167.9	129.48			1.5776	1.6368	NaN	1	0	Median	24141000	9256200	14885000	10103	827	9462	19834	48291;48292	48292	1249	2	9606
MISAAQLLDELMGR	0	1	Acetyl (Protein N-term);Oxidation (M)	1604.7902	0.79021351	309	O95232	LUC7L3	Luc7-like protein 3	yes	yes	1	1	0	16	0																1	24.526	24.526	2	0.027658	19443	DP690-16	55.806	10.208			0.85238	0.99745	NaN	1	0	Median	5891300	3090900	2800400	10104	309	9463	19835	48293	48293	317	1	9606
MITGDSQETAVAIASR	0	1	Unmodified	1648.809	0.80903469	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	11	0											1						15.583	15.583	2	3.1237E-17	10309	DP690-11	215.02	174.53			0.7727	0.92551	NaN	1	0	Median	55542000	28009000	27534000	10105	1068	9464	19836	48294;48295;48296;48297	48297		4	9606
MITGDSQETAVAIASR	0	1	Oxidation (M)	1664.8039	0.80394931	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	1	0	11	0											2						14.763	14.763	2	3.3881E-07	9046	DP690-11	160.56	89.339			NaN	NaN	NaN	0	0	Median	46970000	25625000	21345000	10106	1068	9464	19837;19838	48298;48299;48300;48301;48302	48299	1661	5	9606
MIVVLGEIGGTEEYK	1	0	Oxidation (M)	1652.8331	0.83312418	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	1	0	3	0			1														18.343	18.343	2	0.00021334	13032	DP690-3	121.29	121.29			0.98556	1.0527	NaN	1	0	Median	13704000	5486300	8217500	10107	873	9465	19839	48303;48304	48303	1322	2	9606
MKAQLRVELEEVEFEMPR	1	2	2 Oxidation (M)	2265.1133	0.11333856	915	P57773	GJA9	Gap junction alpha-9 protein	yes	yes	0	2	2	7	0							1										21.509	21.509	2	0.010776	16415	DP690-7	56.087	28.533			0.70218	0.88745	NaN	1	0	Median	8561000	4442900	4118100	10108	915	9466	19840	48305;48306;48307	48306	1408;1409	3	9606
MKDSYIEVLLPLGSEPELR	1	1	Oxidation (M)	2204.1399	0.13987088	2453	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	1	1	13	0													1				20.646	20.646	3	0.0026803	16247	DP690-13	103.71	35.294			NaN	NaN	NaN	0	0	Median	3232600	0	3232600	10109	2453	9467	19841	48308	48308	2903	1	9606
MKDTDSEEEIREAFR	1	2	Oxidation (M)	1870.8367	0.83670601	450	P0DP25;P0DP24;P0DP23			yes	no	0	1	2	16	0																1	14.321	14.321	3	0.0075151	7686	DP690-16	67.997	67.997			0.79346	0.81583	NaN	1	0	Median	33606000	19108000	14498000	10110	450	9468	19842	48309;48310	48309	518	2	9606
MKEDILYHFNLTTSR	1	1	Oxidation (M)	1882.9247	0.92473315	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	1	1	9	3.56						1	1							1			16.194	16.194	3	0.00028413	10560	DP690-14	102.29	78.36			0.95806	0.97325	9.62	3	0	Plateau	160830000	83822000	77012000	10111	1372	9469	19843;19844;19845	48311;48312;48313;48314;48315;48316;48317;48318;48319;48320	48311	2118	10	9606
MKEEVPTALVEAHVR	1	1	Oxidation (M)	1723.8927	0.89270474	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	1	1	10	0										1							13.86	13.86	3	0.0011921	7964	DP690-10	84.62	62.271			0.9	1.0452	NaN	1	0	Median	254020000	126790000	127230000	10112	1710	9470	19846	48321	48321	2302	1	9606
MKEEVPTALVEAHVR	1	1	Unmodified	1707.8978	0.89779012	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	1	10	0										1							14.465	14.465	3	0.0060811	8756	DP690-10	69.979	56.415			0.60854	0.72481	NaN	1	0	Median	174600000	100840000	73752000	10113	1710	9470	19847	48322	48322		1	9606
MKEIAEAYLGK	2	0	Oxidation (M)	1267.6482	0.64822394	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	7.2	3.92				3								2					13.359	13.359	2;3	0.00017742	6048	DP690-4	184.24	121.69			2.0901	2.2081	39.87	5	0	Median	813990000	322900000	491090000	10114	463	9471	19848;19849;19850;19851;19852	48323;48324;48325;48326;48327;48328;48329;48330;48331;48332;48333;48334;48335;48336;48337;48338;48339;48340;48341;48342;48343;48344;48345	48342	544	22	9606
MKEIAEAYLGK	2	0	Unmodified	1251.6533	0.65330932	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	9.33	3.77				2								4					14.234	14.234	2;3	3.6594E-05	7479	DP690-4	130.44	78.268			1.6266	1.763	37.563	4	0	Median	423750000	157390000	266360000	10115	463	9471	19853;19854;19855;19856;19857;19858	48346;48347;48348;48349;48350;48351;48352;48353;48354;48355;48356;48357;48358	48357		13	9606
MKEPSSPPPAPTSSTFGLQDGNLR	1	1	Oxidation (M)	2529.217	0.21695201	1986	Q9BRQ6	CHCHD6	MICOS complex subunit MIC25	yes	yes	0	1	1	15	0															1		15.441	15.441	3	3.7467E-05	9381	DP690-15	113.24	84.94			NaN	NaN	NaN	0	0	Median	4431300	4431300	0	10116	1986	9472	19859	48359	48359	2526	1	9606
MKETAEAYLGK	2	0	Oxidation (M)	1255.6118	0.61183843	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	1	1	4	0				2													11.44	11.44	2;3	0.00017178	3985	DP690-4	114.72	93.349			1.4943	1.5557	6.0838	2	0	Median	85982000	32753000	53229000	10117	462	9473	19860;19861	48360;48361;48362;48363	48361	541	4	9606
MKETAEAYLGKK	3	0	Unmodified	1367.7119	0.71188683	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	2	4	0				2													10.763	10.763	3	0.011973	3201	DP690-4	96.059	70.991			NaN	NaN	NaN	0	0	Median	0	0	0	10118	462	9474	19862;19863	48364;48365	48365		2	9606
MKETAENYLGHTAK	2	0	Unmodified	1591.7664	0.7664416	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	8	4				1								1					10.93	10.93	3	2.2319E-05	3410	DP690-4	164.93	137.5			1.3076	1.4227	86.96	2	0	Median	65697000	36729000	28967000	10119	695	9475	19864;19865	48366;48367;48368;48369	48368		4	9606
MKETAENYLGHTAK	2	0	Oxidation (M)	1607.7614	0.76135622	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	8	4				1								1					10.504	10.504	3	7.6231E-06	2814	DP690-4	139.64	116.72			2.4938	2.5958	NaN	1	0	Median	86357000	56490000	29867000	10120	695	9475	19866;19867	48370;48371;48372;48373	48371	1013	4	9606
MKFNPFVTSDR	1	1	Oxidation (M)	1356.6496	0.64962092	947	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	1	1	15.5	0.5															1	1	14.252	14.252	2	0.010124	7579	DP690-16	97.965	64.775			0.87568	0.95544	NaN	1	0	Median	50968000	23178000	27790000	10121	947	9476	19868;19869	48374;48375;48376;48377	48377	1466	4	9606
MKFNPFVTSDR	1	1	Acetyl (Protein N-term)	1382.6653	0.66527099	947	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	1	0	1	16	0																1	17.074	17.074	2	0.044527	11084	DP690-16	50.805	27.887			0.62917	0.73308	NaN	1	0	Median	2580300	1303600	1276800	10122	947	9476	19870	48378	48378		0	9606
MKGCPVNTEPSGPTCEK	2	0	Oxidation (M)	1906.8223	0.82231827	879	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	1	1	14	0														1			10.332	10.332	3	5.4645E-07	2564	DP690-14	141.1	123.18			0.67339	0.75572	NaN	1	0	Median	32941000	17158000	15783000	10123	879	9477	19871	48379;48380;48381	48379	1336	3	9606
MKGCPVNTEPSGPTCEKK	3	0	Unmodified	2018.9224	0.92236667	879	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	2	14	0														1			10.259	10.259	3	0.0012388	2506	DP690-14	79.514	79.514			0.98395	1.0092	NaN	1	0	Median	9403400	5704400	3699000	10124	879	9478	19872	48382;48383	48383		2	9606
MKGDVVVSLPK	2	0	Oxidation (M)	1187.6584	0.6583947	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	1	9	0									1								13.142	13.142	2	0.039992	5974	DP690-9	82.505	53.778			0.57484	0.68352	NaN	1	0	Median	16086000	10569000	5517000	10125	1145	9479	19873	48384;48385	48384	1792	2	9606
MKGDYDVTVPK	2	0	Oxidation (M)	1267.6118	0.61183843	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	1	9	0									1								12.114	12.114	2	0.0029433	4717	DP690-9	110.84	50.907			0.53425	0.63161	NaN	1	0	Median	20080000	12198000	7882400	10126	1145	9480	19874	48386;48387	48387	1793	2	9606
MKGEVDVSLANVEGDLKGPALDIK	3	0	Oxidation (M)	2513.3047	0.30470438	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	2	9	0									1								18.667	18.667	4	0.0019096	13265	DP690-9	62.823	49.368			0.81753	0.8972	NaN	1	0	Median	8799400	4950900	3848500	10127	1145	9481	19875	48388	48388	1794	1	9606
MKGYPHWPAR	1	1	Oxidation (M)	1257.6077	0.60769653	844;1549	Q7Z4V5;Q9Y3E1;O75475;P51858	HDGFRP2;HDGFRP3;PSIP1;HDGF	Hepatoma-derived growth factor-related protein 2;Hepatoma-derived growth factor-related protein 3;PC4 and SFRS1-interacting protein;Hepatoma-derived growth factor	no	no	0	1	1	6	0						1											10.982	10.982	3	0.014696	3531	DP690-6	93.667	73.283			0.79563	0.89167	NaN	1	0	Median	4781900	2209500	2572300	10128	1549;844	9482	19876	48389	48389	1272	0	9606
MKHYEVEILDAK	2	0	Oxidation (M)	1490.7439	0.74391524	2269	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	1	1	9	0									1								13.195	13.195	3	0.001038	6118	DP690-9	91.307	66.955			0.6878	0.80013	NaN	1	0	Median	37394000	22909000	14485000	10129	2269	9483	19877	48390;48391;48392	48391	2723	3	9606
MKIDDMMFVLQGQWMR	1	1	2 Oxidation (M)	2059.9352	0.93517996	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	2	1	13	0													1				19.516	19.516	3	0.029224	14901	DP690-13	49.066	15.378			1.8197	2.2594	NaN	1	0	Median	22265000	8249700	14015000	10130	637	9484	19878	48393;48394	48394	880;881;882;883	2	9606
MKLDYILGLK	2	0	Oxidation (M)	1208.6839	0.68388117	760	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	1	1	15	0															1		16.867	16.867	2	0.0025671	11184	DP690-15	118.4	68.867			0.95298	1.0922	NaN	1	0	Median	247990000	124550000	123440000	10131	760	9485	19879	48395;48396;48397;48398	48395	1132	4	9606
MKLNISFPATGCQK	2	0	Oxidation (M)	1609.7956	0.79563323	989	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	1	15	0															1		14.7	14.7	2	0.027942	8356	DP690-15	105.65	47.019			NaN	NaN	NaN	0	0	Median	7184400	7184400	0	10132	989	9486	19880	48399;48400	48400	1509	2	9606
MKMPTFSTPGAK	2	0	2 Oxidation (M)	1326.6312	0.63119367	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	2	1	9	0									1								10.709	10.709	3	0.052254	2940	DP690-9	43.405	16.746			0.66115	0.79518	NaN	1	0	Median	10351000	5951800	4398900	10133	1145	9487	19881	48401	48401		1	9606
MKPILLQGHER	1	1	Unmodified	1320.7336	0.73362533	1199	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	1	14	0														1			11.1	11.1	3	0.00065209	3628	DP690-14	101.3	101.3			0.78625	0.98098	NaN	1	0	Median	43415000	23921000	19494000	10134	1199	9488	19882	48402;48403;48404	48404		3	9606
MKPLMGVIYVPLTDKEK	3	0	2 Oxidation (M)	1993.0628	0.062806538	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	2	2	7	0							1										15.078	15.078	4	0.0093999	8332	DP690-7	57.173	39.892			0.77785	0.85499	NaN	1	0	Median	57459000	30135000	27324000	10135	557	9489	19883	48405;48406;48407	48405	721;722	3	9606
MKQDAQVVLYR	1	1	Oxidation (M)	1365.7075	0.70747015	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	9.5	0.5									2	2							12.268	12.268	2;3	0.00035287	4800	DP690-9	107.11	81.879			0.82375	0.9554	9.5906	4	0	Median	489600000	262050000	227550000	10136	1046	9490	19884;19885;19886;19887	48408;48409;48410;48411;48412;48413;48414;48415;48416;48417;48418;48419;48420;48421;48422;48423;48424;48425;48426;48427;48428;48429;48430	48428	1622	23	9606
MKQDAQVVLYR	1	1	Unmodified	1349.7126	0.71255553	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.33	0.471									2	1							13.011	13.011	2;3	0.00012459	5840	DP690-9	114.71	85.807			0.92813	1.0765	3.7487	3	0	Median	257680000	141560000	116130000	10137	1046	9490	19888;19889;19890	48431;48432;48433;48434;48435;48436;48437;48438;48439;48440	48435		10	9606
MKVELCSFSGYK	2	0	Oxidation (M)	1463.6789	0.67887214	1059	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	1	15	0															1		14.362	14.362	2	0.0001519	7866	DP690-15	187.31	160.42			0.95575	1.0946	NaN	1	0	Median	62763000	30444000	32319000	10138	1059	9491	19891	48441;48442;48443;48444;48445	48445	1656	5	9606
MKVELCSFSGYK	2	0	Acetyl (Protein N-term);Oxidation (M)	1505.6894	0.68943683	1059	P83731	RPL24	60S ribosomal protein L24	yes	yes	1	1	1	15	0															1		16.386	16.386	2	0.068999	10691	DP690-15	48.981	16.947			NaN	NaN	NaN	0	0	Median	1969600	0	1969600	10139	1059	9491	19892	48446	48446	1656	1	9606
MKVVEVLAGHGHLYSR	1	1	Oxidation (M)	1810.9512	0.95122267	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	1	2	0		1															12.685	12.685	4	0.00077793	4915	DP690-2	87.138	71.503			0.96136	0.94637	NaN	1	0	Median	38299000	20100000	18199000	10140	789	9492	19893	48447;48448;48449;48450	48448	1184	4	9606
MKYILVTGGVISGIGK	2	0	Oxidation (M)	1650.9379	0.93786402	516	P17812;Q9NRF8	CTPS1;CTPS2	CTP synthase 1;CTP synthase 2	yes	no	0	1	1	4	0				1													17.154	17.154	2	0.052405	11337	DP690-4	97.69	64.148			NaN	NaN	NaN	0	0	Median	2420200	0	2420200	10141	516	9493	19894	48451;48452	48451		2	9606
MKYILVTGGVISGIGK	2	0	Acetyl (Protein N-term)	1676.9535	0.95351408	516	P17812;Q9NRF8	CTPS1;CTPS2	CTP synthase 1;CTP synthase 2	yes	no	1	0	1	4	0				1													19.885	19.885	2	0.053856	14574	DP690-4	68.463	34.593			NaN	NaN	NaN	0	0	Median	0	0	0	10142	516	9493	19895	48453	48453		1	9606
MLALALLDR	0	1	Unmodified	1014.5896	0.58958685	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										2							20.349	20.349	2	0.030505	17238	DP690-10	95.815	26.9			NaN	NaN	NaN	0	0	Median	20050000	0	20050000	10143	1783	9494	19896;19897	48454;48455	48454		2	9606
MLATLEPEQR	0	1	Unmodified	1186.6016	0.6016081	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						14.638	14.638	2	5.2532E-05	8851	DP690-11	185.58	78.901			0.67489	0.75512	NaN	1	0	Median	274260000	144570000	129690000	10144	891	9495	19898	48456;48457;48458	48458		3	9606
MLATLEPEQR	0	1	Oxidation (M)	1202.5965	0.59652272	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	1	0	10	1									1		1						13.379	13.379	2	0.00051739	6288	DP690-9	124.08	76.893			0.39752	0.49617	NaN	1	0	Median	161140000	11759000	149380000	10145	891	9495	19899;19900	48459;48460	48460	1356	2	9606
MLDAEDIVGTARPDEK	1	1	Oxidation (M)	1774.8407	0.84072875	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	1	1	11	0											2						15.598	15.598	2;3	0.00011072	10264	DP690-11	111.81	90.559			0.75267	0.86372	NaN	1	0	Median	130590000	78274000	52313000	10146	476	9496	19901;19902	48461;48462;48463	48461	583	3	9606
MLDFFTIFSK	1	0	Acetyl (Protein N-term)	1289.6366	0.63659662	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	1	0	0	12	0												1					27.115	27.115	2	0.077464	22865	DP690-12	63.283	39.253			0.86482	0.99776	NaN	1	0	Median	539440	231080	308360	10147	417	9497	19903	48464	48464		1	9606
MLDFFTIFSK	1	0	Unmodified	1247.626	0.62603194	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	12.7	0.943												2		1			24.36	24.36	2	0.0083404	20933	DP690-12	113.18	32.947			0.92578	1.0891	NaN	1	0	Median	2819700	1849900	969740	10148	417	9497	19904;19905;19906	48465;48466;48467	48465		3	9606
MLDLLEDFLEHEGYK	1	0	Oxidation (M)	1866.871	0.87096625	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	0	10	0										1							22.537	22.537	3	0.039789	20066	DP690-10	64.842	54.375			0.80231	0.97846	NaN	1	0	Median	23185000	13159000	10026000	10149	1297	9498	19907	48468	48468	1983	0	9606
MLDLLEDFLEHEGYKYER	1	1	Oxidation (M)	2315.078	0.07799891	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	1	10	0										2							21.287	21.287	3;4	4.9902E-05	18402	DP690-10	118.21	103.32			0.95982	1.1626	25.179	2	0	Median	51067000	25837000	25229000	10150	1297	9499	19908;19909	48469;48470;48471	48469	1983	2	9606
MLDMGFEPQIR	0	1	Oxidation (M)	1351.6264	0.62644264	517;96;1793	O00571;O15523;Q92841;P17844	DDX3X;DDX3Y;DDX17;DDX5	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	1	0	11.6	0.495											3	4					17.731	17.731	2	0.00025605	11677	DP690-12	120.31	84.795			0.82621	0.89729	20.726	4	0	Median	1032699999.9999999	566510000	466180000	10151	96;1793;517	9500	19910;19911;19912;19913;19914;19915;19916	48472;48473;48474;48475;48476;48477;48478;48479;48480;48481;48482;48483;48484;48485	48478	108;109;656;657	14	9606
MLDMGFEPQIR	0	1	Unmodified	1335.6315	0.63152802	517;96;1793	O00571;O15523;Q92841;P17844	DDX3X;DDX3Y;DDX17;DDX5	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	11.8	0.433											1	3					18.994	18.994	2	2.916E-05	14490	DP690-12	190.62	134.19			0.86142	0.96788	3.8644	2	0	Median	538360000	238480000	299870000	10152	96;1793;517	9500	19917;19918;19919;19920	48486;48487;48488;48489;48490;48491;48492;48493	48492		8	9606
MLDMGFEPQIR	0	1	2 Oxidation (M)	1367.6214	0.62135726	517;96;1793	O00571;O15523;Q92841;P17844	DDX3X;DDX3Y;DDX17;DDX5	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	2	0	9.8	3.12				1					1			3					16.554	16.554	2	0.0027021	10253	DP690-12	99.013	65.216			0.82456	0.92852	18.682	4	0	Median	726770000	387940000	338830000	10153	96;1793;517	9500	19921;19922;19923;19924;19925	48494;48495;48496;48497;48498;48499;48500;48501;48502;48503;48504;48505;48506;48507;48508;48509;48510	48494	108;109;656;657	17	9606
MLDQENTIR	0	1	Oxidation (M)	1134.5339	0.53392246	2570				yes	yes	0	1	0	13	0													2				18.255	18.255	1;2	0.0070888	13196	DP690-13	102.71	36.641	+		0.67281	0.82009	4.3432	2	0	Median	84657000	47426000	37231000	10154	2570	9501	19926;19927	48511;48512;48513;48514	48513	2986	4	9606
MLENTDNSSPSTEHSQGLEK	1	0	Oxidation (M)	2218.9648	0.96481965	1867	Q96H79	ZC3HAV1L	Zinc finger CCCH-type antiviral protein 1-like	yes	yes	0	1	0	7	2.65						7								1			10.653	10.653	2;3	2.8111999999999998E-39	3101	DP690-6	230.48	198.15			0.83153	0.9501	12.529	2	0	Median	173190000	102920000	70269000	10155	1867	9502	19928;19929;19930;19931;19932;19933;19934;19935	48515;48516;48517;48518;48519;48520;48521;48522;48523;48524;48525;48526;48527;48528;48529	48525	2424	15	9606
MLENTDNSSPSTEHSQGLEK	1	0	Unmodified	2202.9699	0.96990502	1867	Q96H79	ZC3HAV1L	Zinc finger CCCH-type antiviral protein 1-like	yes	yes	0	0	0	6	0						1											11.602	11.602	3	8.167E-15	4156	DP690-6	193.27	180.38			0.76862	0.86107	NaN	1	0	Median	29016000	17548000	11468000	10156	1867	9502	19936	48530;48531;48532	48531		3	9606
MLESITNELSLFSK	1	0	Oxidation (M)	1626.8175	0.81747411	1850	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	1	0	6.67	3.77				2								1					21.258	21.258	2	0.0042544	17497	DP690-12	114.72	56.447			NaN	NaN	NaN	0	0	Median	3427800	571210	2856600	10157	1850	9503	19937;19938;19939	48533;48534;48535;48536	48533	2416	4	9606
MLFKDDYPSSPPK	2	0	Oxidation (M)	1539.7279	0.72793082	1024	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	1	1	13.3	3.77								1								2	13.737	13.737	2;3	4.5513E-05	6916	DP690-16	122.66	101.31			0.62293	0.68622	8.6137	3	0	Median	272100000	156360000	115750000	10158	1024	9504	19940;19941;19942	48537;48538;48539;48540;48541;48542;48543;48544;48545;48546;48547;48548;48549;48550;48551;48552	48541	1553	16	9606
MLGPEGGEGFVVK	1	0	Acetyl (Protein N-term);Oxidation (M)	1376.6646	0.66460229	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	1	0	14.2	1.3													2		1	1	19.285	19.285	1;2	5.5038E-08	14237	DP690-15	128.51	103.66			0.83295	0.94606	4.9725	4	0	Median	253000000	137830000	115180000	10159	856	9505	19943;19944;19945;19946	48553;48554;48555;48556;48557;48558;48559;48560;48561;48562	48560	1298	10	9606
MLGPEGGEGFVVK	1	0	Acetyl (Protein N-term)	1360.6697	0.66968766	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	0	0	13	0													1				21.468	21.468	2	0.00050847	17297	DP690-13	112.13	64.17			0.79442	0.91844	NaN	1	0	Median	57987000	31432000	26556000	10160	856	9505	19947	48563;48564;48565;48566	48565		4	9606
MLGTEGGEGFVVK	1	0	Oxidation (M)	1338.649	0.64895222	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	13	0													1				15.341	15.341	2	0.00046627	9278	DP690-13	115.23	95.091			0.76001	0.88082	NaN	1	0	Median	40395000	22615000	17779000	10161	639	9506	19948	48567	48567	890	1	9606
MLGTEGGEGFVVK	1	0	Acetyl (Protein N-term);Oxidation (M)	1380.6595	0.65951691	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	1	1	0	13	0													1				18.953	18.953	2	2.3633E-05	14059	DP690-13	151.22	114.66			0.8053	0.93075	NaN	1	0	Median	61108000	34096000	27012000	10162	639	9506	19949	48568;48569;48570;48571	48569	890	4	9606
MLGTEGGEGFVVK	1	0	Acetyl (Protein N-term)	1364.6646	0.66460229	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	1	0	0	13	0													1				21.239	21.239	2	0.0024203	17116	DP690-13	95.483	49.511			0.78175	0.90979	NaN	1	0	Median	26667000	14742000	11926000	10163	639	9506	19950	48572	48572		1	9606
MLGYFSLVGLLR	0	1	Oxidation (M)	1383.7584	0.75844309	2429	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	1	0	12	0												1					23.345	23.345	2	0.00020421	19837	DP690-12	136.57	136.57			1.104	1.3495	NaN	1	0	Median	5663800	2801000	2862800	10164	2429	9507	19951	48573;48574;48575;48576	48574	2867	4	9606
MLLDPMGGIVMTNDGNAILR	0	1	3 Oxidation (M)	2178.0483	0.048295461	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	3	0	4	0				2													18.702	18.702	2	5.2602E-06	13155	DP690-4	128.95	108.29			1.5354	1.7896	NaN	1	0	Median	12936000	4985200	7950500	10165	791	9508	19952;19953	48577;48578;48579;48580;48581;48582	48578	1194;1195;1196	6	9606
MLLDSVLTTHER	0	1	Oxidation (M)	1429.7235	0.72351415	1859	Q96GC5	MRPL48	39S ribosomal protein L48, mitochondrial	yes	yes	0	1	0	16	0																1	16.045	16.045	3	0.00025858	9866	DP690-16	109.39	92.366			0.78753	0.90783	NaN	1	0	Median	28193000	15369000	12823000	10166	1859	9509	19954	48583;48584	48583	2421	2	9606
MLLHEGQHPAQLR	0	1	Oxidation (M)	1544.7882	0.78818009	1407	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	1	0	7	0							1										10.533	10.533	3	3.8351E-05	2981	DP690-7	136.53	118.94			1.209	1.3241	NaN	1	0	Median	64850000	29413000	35437000	10167	1407	9510	19955	48585;48586;48587	48586	2139	3	9606
MLLHEGQHPAQLR	0	1	Unmodified	1528.7933	0.79326547	1407	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	0	0	7	0							1										11.318	11.318	3	0.029298	3869	DP690-7	74.392	39.624			NaN	NaN	NaN	0	0	Median	4773200	4773200	0	10168	1407	9510	19956	48588;48589	48589		2	9606
MLLHSEQHPGQLK	1	0	Oxidation (M)	1532.7769	0.7769467	645	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	1	0	14	0														1			10.374	10.374	3	5.8254E-05	2639	DP690-14	142.97	112.95			1.3183	1.603	NaN	1	0	Median	48031000	20909000	27122000	10169	645	9511	19957	48590;48591	48591	901	2	9606
MLLHSEQHPGQLK	1	0	Unmodified	1516.782	0.78203208	645	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	14	0														1			10.711	10.711	3	0.0010705	3083	DP690-14	89.43	68.371			0.66651	0.81121	NaN	1	0	Median	40684000	24954000	15730000	10170	645	9511	19958	48592;48593	48592		2	9606
MLLLPSAADGR	0	1	Acetyl (Protein N-term)	1184.6223	0.62234354	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	1	0	0	11	0											1						23.811	23.811	1	0.038773	21393	DP690-11	53.166	53.166			0.72384	0.88429	NaN	1	0	Median	5073700	2966300	2107400	10171	1941	9512	19959	48594	48594		0	9606
MLLNDFLNDQNR	0	1	Oxidation (M)	1507.7089	0.70892672	1085	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	1	0	4	0				1													18.894	18.894	2	0.0012835	13536	DP690-4	107.79	76.366			1.4998	1.7335	NaN	1	0	Median	3822000	1873400	1948500	10172	1085	9513	19960	48595;48596	48595	1706	2	9606
MLLQSSEGR	0	1	Oxidation (M)	1035.5019	0.50189405	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	10	0										2							11.147	11.147	2	0.012518	3904	DP690-10	105.57	57.993			NaN	NaN	NaN	0	0	Median	60688000	0	60688000	10173	269	9514	19961;19962	48597;48598;48599	48598	275	3	9606
MLNIHPSLLPSFK	1	0	Oxidation (M)	1511.817	0.8170206	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	1	0	3	0			2														17.893	17.893	2;3	5.3228E-05	12418	DP690-3	143.55	114			0.75037	0.78429	21.281	2	0	Median	83243000	46080000	37163000	10174	559	9515	19963;19964	48600;48601;48602;48603;48604;48605	48601	726	6	9606
MLNIHPSLLPSFK	1	0	Unmodified	1495.8221	0.82210598	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														18.574	18.574	3	0.00014766	13329	DP690-3	109.6	109.6			0.77249	0.82807	NaN	1	0	Median	21441000	10635000	10805000	10175	559	9515	19965	48606	48606		1	9606
MLNTNYHLPPSPK	1	0	Oxidation (M)	1526.7551	0.75514863	362	P03928	MT-ATP8	ATP synthase protein 8	yes	yes	0	1	0	16	0																1	13.464	13.464	3	0.0024676	6472	DP690-16	81.789	63.694			0.61935	0.68453	NaN	1	0	Median	85122000	52509000	32613000	10176	362	9516	19966	48607;48608;48609	48608	376	3	9606
MLNTNYHLPPSPKPMK	2	0	2 Oxidation (M)	1898.9383	0.93827473	362	P03928	MT-ATP8	ATP synthase protein 8	yes	yes	0	2	1	16	0																2	12.534	12.534	3;4	0.025903	5288	DP690-16	50.874	35.247			0.55561	0.62591	0.10301	2	0	Median	118780000	73649000	45131000	10177	362	9517	19967;19968	48610;48611;48612	48610	376;377	3	9606
MLPAFMSSGVFPQFSPK	1	0	Unmodified	1869.9157	0.91574837	2559				yes	yes	0	0	0	14	0														1			15.206	15.206	2	0.022111	8965	DP690-14	72.152	17.666	+		0.71515	0.83648	NaN	1	0	Median	189030000	110090000	78938000	10178	2559	9518	19969	48613	48613		1	9606
MLPAFMSSGVFPQFSPK	1	0	Oxidation (M)	1885.9107	0.91066299	2559				yes	yes	0	1	0	14	0														1			15.41	15.41	2	0.035468	9317	DP690-14	61.213	16.135	+		0.72199	0.80583	NaN	1	0	Median	465220000	261730000	203480000	10179	2559	9518	19970	48614;48615	48614	2980	2	9606
MLQEDPVLFQLYK	1	0	Oxidation (M)	1638.8327	0.83273025	646	P32780	GTF2H1	General transcription factor IIH subunit 1	yes	yes	0	1	0	12	0												1					20.331	20.331	2	1.4645E-05	16272	DP690-12	189.17	189.17			0.64007	0.77044	NaN	1	0	Median	17564000	10001000	7562500	10180	646	9519	19971	48616;48617	48617	903	2	9606
MLQFVLPVATQIQQEVIK	1	0	Oxidation (M)	2100.1653	0.16529777	1947	Q99622	C12orf57	Protein C10	yes	yes	0	1	0	16	0																1	22.419	22.419	2	0.00015684	17367	DP690-16	121.04	121.04			0.59912	0.6955	NaN	1	0	Median	1796600	975850	820750	10181	1947	9520	19972	48618;48619;48620;48621	48619	2479	4	9606
MLQPCGPPADKPEEN	1	0	Oxidation (M)	1697.7389	0.73890622	2029	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	1	1	12	4								1								1	12.025	12.025	2	5.6301E-05	4689	DP690-16	166.29	141.45			0.62776	0.71028	16.777	2	0	Median	67084000	42667000	24417000	10182	2029	9521	19973;19974	48622;48623;48624;48625;48626;48627;48628	48625	2563	7	9606
MLQPCGPPADKPEEN	1	0	Unmodified	1681.744	0.74399159	2029	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	0	1	16	0																1	13.034	13.034	2	6.2652E-05	6050	DP690-16	144.7	115.15			0.6395	0.74905	NaN	1	0	Median	9397400	5910900	3486400	10183	2029	9521	19975	48629;48630;48631;48632	48632		4	9606
MLQTDPTARPTINELLNDEFFTSGYIPAR	0	2	Oxidation (M)	3325.6289	0.62889207	871	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	1	1	12	0												1					22.087	22.087	3	0.00021468	18614	DP690-12	97.057	76.034			NaN	NaN	NaN	0	0	Median	4492200	4492200	0	10184	871	9522	19976	48633;48634;48635	48634	1315	3	9606
MLQVASQASR	0	1	Unmodified	1089.5601	0.56007764	1811	Q969T9	WBP2	WW domain-binding protein 2	yes	yes	0	0	0	10	4						1								1			11.931	11.931	2	0.00017411	4655	DP690-14	131.62	94.058			0.80389	0.94767	8.5389	2	0	Median	51880000	31120000	20759000	10185	1811	9523	19977;19978	48636;48637;48638;48639;48640	48636		5	9606
MLREPAEPVAAEPK	1	1	Unmodified	1536.797	0.79701344	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	1	14	0														1			12.538	12.538	3	0.0020587	5442	DP690-14	79.022	60.426			0.36816	0.39222	NaN	1	0	Median	431110000	283090000	148030000	10186	820	9524	19979	48641;48642	48641		2	9606
MLREPAEPVAAEPK	1	1	Oxidation (M)	1552.7919	0.79192807	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	1	1	14	0														1			11.914	11.914	3	0.053572	4631	DP690-14	75.02	28.951			NaN	NaN	NaN	0	0	Median	104720000	0	104720000	10187	820	9524	19980	48643	48643		1	9606
MLSAVSQQVQCIQEALR	0	1	Oxidation (M)	1975.9819	0.98193045	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	9	0									2								20.121	20.121	2	3.5294E-28	14902	DP690-9	227.57	170.04			NaN	NaN	NaN	0	0	Median	12208000	4688200	7520300	10188	1264	9525	19981;19982	48644;48645;48646;48647;48648	48647	1919	5	9606
MLSELPALGISGIRPTYILR	0	2	Oxidation (M)	2215.2399	0.2398597	2490	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	1	1	11	0											1						20.533	20.533	3	0.07023	17350	DP690-11	45.618	45.618			0.60416	0.74476	NaN	1	0	Median	12522000	6023100	6499200	10189	2490	9526	19983	48649	48649		0	9606
MLSFQGLAELAHR	0	1	Oxidation (M)	1487.7555	0.75548298	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	1	0	11	0											1						18.829	18.829	3	8.6934E-05	14974	DP690-11	118.61	91.458			0.83766	0.99867	NaN	1	0	Median	41720000	20217000	21503000	10190	149	9527	19984	48650;48651;48652	48651	167	3	9606
MLSFQGLAELAHR	0	1	Unmodified	1471.7606	0.76056836	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	11	0											1						19.615	19.615	3	0.0001269	16080	DP690-11	110.98	69.735			0.61788	0.7406	NaN	1	0	Median	57902000	34438000	23463000	10191	149	9527	19985	48653;48654;48655;48656	48654		4	9606
MLSLDFLDDVR	0	1	Oxidation (M)	1338.649	0.64895222	1026	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	0	1	0	16	0																1	21.708	21.708	2	0.0096377	16665	DP690-16	86.624	86.624			0.77405	0.90847	NaN	1	0	Median	3070700	1792600	1278200	10192	1026	9528	19986	48657	48657	1557	1	9606
MLSLDFLDDVRR	0	2	Oxidation (M)	1494.7501	0.75006325	1026	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	0	1	1	16	0																1	19.556	19.556	3	0.00017937	14155	DP690-16	108.31	68.396			0.78581	0.83023	NaN	1	0	Median	12443000	7039500	5403600	10193	1026	9529	19987	48658;48659;48660	48658	1557	3	9606
MLSTAYEQSAQAAQQVSDSSR	0	1	Oxidation (M)	2273.023	0.023003226	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	1	0	10.3	0.471										2	1						15.764	15.764	2	1.6086E-13	10711	DP690-10	192.32	153.95			1.0343	1.2938	NaN	1	0	Median	35579000	17723000	17856000	10194	1234	9530	19988;19989;19990	48661;48662;48663	48662	1887	3	9606
MLSTAYEQSAQAAQQVSDSSR	0	1	Unmodified	2257.0281	0.028088604	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	0	10	0										2							16.427	16.427	2	0.0011175	11630	DP690-10	134.88	99.924			NaN	NaN	NaN	0	0	Median	0	0	0	10195	1234	9530	19991;19992	48664;48665	48665		2	9606
MLTAQDMSYDEAR	0	1	2 Oxidation (M)	1561.6389	0.63885782	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	2	0	10	0										1							12.624	12.624	2	0.026213	6036	DP690-10	133.91	94.607			NaN	NaN	NaN	0	0	Median	0	0	0	10196	1080	9531	19993	48666	48666	1695;1696	1	9606
MLTAQDMSYDEAR	0	1	Oxidation (M)	1545.6439	0.6439432	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										2							13.559	13.559	2	0.0080153	7420	DP690-10	108.7	85.321			NaN	NaN	NaN	0	0	Median	0	0	0	10197	1080	9531	19994;19995	48667;48668	48668	1695;1696	2	9606
MLTATAMPTVATSVQSPYR	0	1	2 Oxidation (M)	2055.9969	0.99691182	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	2	0	2	0		1															15.451	15.451	2	3.6846E-11	8313	DP690-2	167.98	167.98			0.71316	0.73135	NaN	1	0	Median	3520800	2053900	1466800	10198	2418	9532	19996	48669;48670;48671;48672	48672	2846;2847	4	9606
MLTGPVYSQSTALTHK	1	0	Oxidation (M)	1748.8767	0.87672033	1576	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	1	0	3	0			1														13.784	13.784	3	0.0014739	7086	DP690-3	79.317	56.31			1.2253	1.3105	NaN	1	0	Median	23384000	12332000	11053000	10199	1576	9533	19997	48673;48674;48675	48673	2243	3	9606
MLVDDIGDVTITNDGATILK	1	0	Oxidation (M)	2119.0719	0.071850899	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	1	0	4	0				1													20.567	20.567	2	4.7859E-06	15324	DP690-4	131.24	105.26			1.7117	1.8282	NaN	1	0	Median	2179300	922990	1256300	10200	520	9534	19998	48676;48677;48678;48679;48680	48677	668	5	9606
MLVIPPGLSEEEEALQK	1	0	Oxidation (M)	1897.9707	0.97068029	528	P18615	NELFE	Negative elongation factor E	yes	yes	0	1	0	13	0													1				19.774	19.774	2	0.0056377	15119	DP690-13	76.24	50.008			0.5732	0.65201	NaN	1	0	Median	8826300	6490200	2336200	10201	528	9535	19999	48681	48681	678	1	9606
MLVLDEADEMLNK	1	0	2 Oxidation (M)	1551.716	0.71604551	696	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	2	0	13	0													1				16.427	16.427	2	0.0042465	10780	DP690-13	89.9	72.734			1.0219	1.183	NaN	1	0	Median	45324000	21349000	23975000	10202	696	9536	20000	48682;48683;48684	48683	1017;1018	3	9606
MLVQCMQDQEHPSIR	0	1	2 Oxidation (M)	1902.8386	0.83863704	82	O00410	IPO5	Importin-5	yes	yes	0	2	0	3	0			1														11.729	11.729	3	0.00037354	4356	DP690-3	93.478	74.544			1.0437	1.1844	NaN	1	0	Median	10963000	5704200	5258500	10203	82	9537	20001	48685;48686	48686	91;92	2	9606
MLVSGAGDIK	1	0	Oxidation (M)	1005.5165	0.51648149	702	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	yes	no	0	1	0	4	0				1													12.468	12.468	2	0.005615	5143	DP690-4	93.111	38.561			1.5563	1.6705	NaN	1	0	Median	40939000	15423000	25516000	10204	702	9538	20002	48687;48688;48689	48688	1031	3	9606
MLVTFDEELRPLPVSVR	0	2	Oxidation (M)	2016.0714	0.071397389	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	1	1	3	0			1														19.063	19.063	3	0.00017464	13871	DP690-3	105.03	76.448			1.213	1.2548	NaN	1	0	Median	25141000	11104000	14037000	10205	1190	9539	20003	48690;48691;48692	48690	1843	3	9606
MLYDMENPPADEYFGR	0	1	2 Oxidation (M)	1978.8077	0.80771406	1806	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	2	0	4	0				1													17.306	17.306	2	0.00070936	11633	DP690-4	132.86	111.47			NaN	NaN	NaN	0	0	Median	2125000	2125000	0	10206	1806	9540	20004	48693;48694	48694	2384;2385	2	9606
MLYVPVMPGHAK	1	0	2 Oxidation (M)	1373.6836	0.68356359	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	2	0	3	0			1														12.987	12.987	3	0.0023474	5974	DP690-3	78.513	43.309			0.71883	0.76393	NaN	1	0	Median	29906000	17380000	12526000	10207	5	9541	20005	48695;48696	48695	7;8	2	9606
MMCGAPSATQPATAETQHIADQVR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	2644.168	0.16796968	364	P04080	CSTB	Cystatin-B	yes	yes	1	2	0	8	0								1									15.993	15.993	2	1.3909E-10	9189	DP690-8	153.2	145.36			0.79225	0.93425	NaN	1	0	Median	5499000	3009900	2489100	10208	364	9542	20006	48697;48698;48699;48700;48701;48702;48703	48698	378;379	7	9606
MMDLEEVIPLDCCR	0	1	2 Oxidation (M)	1811.7562	0.75621254	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	2	0	3	0			1														18.745	18.745	2	9.0699E-06	13575	DP690-3	158.08	122.31			NaN	NaN	NaN	0	0	Median	2420900	0	2420900	10209	1887	9543	20007	48704	48704	2435;2436	1	9606
MMDQARSAFSNLFGGEPLSYTR	0	2	Unmodified	2477.1468	0.14676395	360	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	1	12	0												1					9.7952	9.7952	5	0.054293	2052	DP690-12	35.159	22.963			0.79161	0.89755	NaN	1	0	Median	2469500	1250000	1219500	10210	360	9544	20008	48705	48705		1	9606
MMDYLQGSGETPQTDVR	0	1	2 Oxidation (M)	1958.835	0.83499145	1288	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	2	0	3	0			1														14.445	14.445	2	1.3841E-05	7941	DP690-3	155.02	119.34			NaN	NaN	NaN	0	0	Median	3676000	0	3676000	10211	1288	9545	20009	48706;48707	48707	1975;1976	2	9606
MMEEFVPHSK	1	0	2 Oxidation (M)	1265.542	0.54204431	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	2	0	3	0			1														10.74	10.74	3	0.0044655	3126	DP690-3	76.943	53.916			0.75145	0.79231	NaN	1	0	Median	40578000	22432000	18146000	10212	2437	9546	20010	48708;48709;48710;48711	48711	2880;2881	4	9606
MMGHRPVLVLSQNTK	1	1	Acetyl (Protein N-term);2 Oxidation (M)	1783.9073	0.90730895	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	1	2	1	4	0				1													12.951	12.951	3	0.00053625	5887	DP690-4	87.363	69.446			1.4811	1.6892	NaN	1	0	Median	51744000	19503000	32241000	10213	791	9547	20011	48712;48713;48714	48713	1197;1198	3	9606
MMIHGFQSSHR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1403.6074	0.60743853	270	O75663	TIPRL	TIP41-like protein	yes	yes	1	2	0	7	0							1										10.88	10.88	3	0.016534	3394	DP690-7	79.036	54.781			1.1598	1.2984	NaN	1	0	Median	35786000	17444000	18342000	10214	270	9548	20012	48715	48715	284;285	0	9606
MMLDDIVSR	0	1	Unmodified	1078.5151	0.51510128	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	11	0											1						18.157	18.157	2	0.077863	13947	DP690-11	84.743	14.745			NaN	NaN	NaN	0	0	Median	0	0	0	10215	1798	9549	20013	48716	48716		1	9606
MMLDDIVSR	0	1	2 Oxidation (M)	1110.5049	0.50493052	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	2	0	3	0			1														14.638	14.638	2	0.075489	8175	DP690-3	66.621	41.171			0.94882	1.0885	NaN	1	0	Median	15755000	7458300	8296600	10216	1798	9549	20014	48717	48717		1	9606
MMLGTEGGEGFVVK	1	0	Acetyl (Protein N-term);Oxidation (M)	1511.7	0.70000151	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	1	1	0	13	0													1				20.413	20.413	2	0.0004416	15937	DP690-13	99.973	81.228			0.75761	0.87137	NaN	1	0	Median	13359000	9030600	4328200	10217	639	9550	20015	48718;48719	48718	890;891	2	9606
MMLGTEGGEGFVVK	1	0	Acetyl (Protein N-term)	1495.7051	0.70508689	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	1	0	0	13	0													1				22.587	22.587	2	0.0014049	18609	DP690-13	101.38	80.009			0.94045	1.0774	NaN	1	0	Median	11669000	5907000	5762500	10218	639	9550	20016	48720;48721;48722	48720		3	9606
MMLGTEGGEGFVVK	1	0	Acetyl (Protein N-term);2 Oxidation (M)	1527.6949	0.69491614	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	1	2	0	15	0															1		18.469	18.469	2	0.0030444	13322	DP690-15	94.363	51.645			NaN	NaN	NaN	0	0	Median	3073300	3073300	0	10219	639	9550	20017	48723;48724	48724	890;891	2	9606
MMLMSTATAFYR	0	1	3 Oxidation (M)	1469.6353	0.63529277	460	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	3	0	16	0																1	15.037	15.037	2	0.00014666	8542	DP690-16	140.45	121.18			0.77497	0.88369	NaN	1	0	Median	38015000	19450000	18565000	10220	460	9551	20018	48725;48726;48727	48726	528;529;530	3	9606
MMNGGHYTYSENRVEK	1	1	Oxidation (M)	1930.8302	0.83018084	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	1	1	7.5	0.5							1	1									10.371	10.371	4	0.010585	2800	DP690-7	58.885	42.363			0.78907	0.87351	5.8893	2	0	Median	50513000	24650000	25863000	10221	1939	9552	20019;20020	48728;48729	48728	2472;2473	1	9606
MMQEQMTGAAMAMPADTNK	1	0	5 Oxidation (M)	2135.8302	0.83018212	2289	Q9P0I2	EMC3	ER membrane protein complex subunit 3	yes	yes	0	5	0	15	0															1		10.249	10.249	2	1.0626E-05	2588	DP690-15	125.53	125.53			1.4768	1.7086	NaN	1	0	Median	4513500	2052100	2461400	10222	2289	9553	20021	48730;48731	48731	2738;2739;2740;2741;2742	2	9606
MMQKPGSNAPVGGNVTSSFSGDDLECR	1	1	2 Oxidation (M)	2872.2426	0.24259118	448	Q8NHU0;Q5HYN5;Q5DJT8;P0DMV2;P0DMV1	CT45A3;CT45A1;CT45A2;CT45A9;CT45A8	Cancer/testis antigen family 45 member A3;Cancer/testis antigen family 45 member A1;Cancer/testis antigen family 45 member A2;Cancer/testis antigen family 45 member A9;Cancer/testis antigen family 45 member A8	yes	no	0	2	1	15	0															1		15.065	15.065	3	7.4874E-06	8904	DP690-15	117	104.2			0.76947	0.90762	NaN	1	0	Median	14599000	6783500	7815800	10223	448	9554	20022	48732;48733	48733	512;513	2	9606
MNDIVKEFEDR	1	1	Oxidation (M)	1410.6449	0.64492948	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	1	1	12	0												1					15.894	15.894	3	0.00066877	10256	DP690-12	99.752	70.285			0.75731	0.96585	NaN	1	0	Median	20695000	12379000	8315500	10224	886	9555	20023	48734	48734	1347	1	9606
MNDIVKEFEDR	1	1	Unmodified	1394.65	0.65001485	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	12	0												1					16.9	16.9	3	0.066053	11663	DP690-12	98.182	98.182			0.77497	1.0051	NaN	1	0	Median	27872000	15658000	12214000	10225	886	9555	20024	48735	48735		0	9606
MNEGFAFVSGTETLALTHR	0	1	Oxidation (M)	2095.9997	0.99968901	2577				yes	yes	0	1	0	12	0												1					20.481	20.481	2	0.014594	16481	DP690-12	102.64	36.139	+		NaN	NaN	NaN	0	0	Median	0	0	0	10226	2577	9556	20025	48736	48736	2990	1	9606
MNFGDFLTVMTQK	1	0	2 Oxidation (M)	1562.7109	0.71090055	716	P41208	CETN2	Centrin-2	yes	yes	0	2	0	16	0																1	18.924	18.924	2	0.0013044	13446	DP690-16	104.07	76.642			0.82145	0.95629	NaN	1	0	Median	2440100	1140300	1299800	10227	716	9557	20026	48737;48738	48737	1044;1045	2	9606
MNINGQWEGEVNGR	0	1	Oxidation (M)	1618.7158	0.71580301	753	P46109	CRKL	Crk-like protein	yes	yes	0	1	0	6	0						1											14.54	14.54	2	1.5125E-13	7687	DP690-6	214.67	194.37			0.81153	0.88422	NaN	1	0	Median	58856000	34376000	24480000	10228	753	9558	20027	48739;48740;48741;48742	48741	1114	4	9606
MNINGQWEGEVNGR	0	1	Unmodified	1602.7209	0.72088839	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	6	0						1											16.042	16.042	2	2.8989E-17	9354	DP690-6	199.08	124.16			NaN	NaN	NaN	0	0	Median	5464600	0	5464600	10229	753	9558	20028	48743;48744	48744		2	9606
MNINGQWEGEVNGRK	1	1	Oxidation (M)	1746.8108	0.81076603	753	P46109	CRKL	Crk-like protein	yes	yes	0	1	1	6	0						1											13.044	13.044	3	0.00011073	5713	DP690-6	108.23	108.23			0.91948	1.0305	NaN	1	0	Median	5143400	2709400	2434000	10230	753	9559	20029	48745;48746	48745	1114	2	9606
MNLASSFVNGFVNAAFGQDK	1	0	Oxidation (M)	2131.9997	0.99968901	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	1	0	3	0			2														24.229	24.229	2	0.063957	19943	DP690-3	79.771	36.389			NaN	NaN	NaN	0	0	Median	0	0	0	10231	1190	9560	20030;20031	48747;48748	48747		2	9606
MNNKFDALKDDDSGDHDQNEENSTQK	3	0	Acetyl (Protein N-term);Oxidation (M)	3052.2588	0.25882941	212	O60573	EIF4E2	Eukaryotic translation initiation factor 4E type 2	yes	yes	1	1	2	15	0															1		12.355	12.355	4	0.0019567	5203	DP690-15	57.692	52.189			0.80373	0.87553	NaN	1	0	Median	24924000	11962000	12962000	10232	212	9561	20032	48749	48749	217	1	9606
MNQVEDEVFEEFCR	0	1	Oxidation (M)	1846.7502	0.75019918	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	1	0	10	0										1							20.11	20.11	2	6.8452E-05	16946	DP690-10	134.3	110.79			0.86915	1.085	NaN	1	0	Median	28173000	12234000	15940000	10233	1285	9562	20033	48750	48750	1971	1	9606
MNQVEDEVFEEFCR	0	1	Unmodified	1830.7553	0.75528456	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							20.874	20.874	2	0.075002	18004	DP690-10	80.834	59.605			NaN	NaN	NaN	0	0	Median	11279000	11279000	0	10234	1285	9562	20034	48751	48751		1	9606
MNSNVENLPPHIIR	0	1	Acetyl (Protein N-term);Oxidation (M)	1690.8461	0.8460889	1369	Q16763	UBE2S	Ubiquitin-conjugating enzyme E2 S	yes	yes	1	1	0	15	0															4		16.19	16.19	2	4.7811E-15	10325	DP690-15	217.22	163.99			NaN	NaN	NaN	0	0	Median	0	0	0	10235	1369	9563	20035;20036;20037;20038	48752;48753;48754;48755	48752	2117	4	9606
MNVDQAFHELVR	0	1	Oxidation (M)	1473.7034	0.70344741	961	P62070	RRAS2	Ras-related protein R-Ras2	yes	yes	0	1	0	15	0															1		16.478	16.478	3	0.01556	10776	DP690-15	64.827	44.087			0.71582	0.83163	NaN	1	0	Median	27175000	15005000	12170000	10236	961	9564	20039	48756	48756	1480	1	9606
MNVFEMPIIGSDFK	1	0	2 Oxidation (M)	1658.7684	0.76841543	2543				yes	yes	0	2	0	15	0															1		20.298	20.298	3	0.040159	15494	DP690-15	48.467	26.692	+		0.85046	1.0026	NaN	1	0	Median	14414000	7458600	6955100	10237	2543	9565	20040	48757	48757	2969;2970	1	9606
MNVGTAHSEVNPNTR	0	1	Acetyl (Protein N-term);Oxidation (M)	1683.7635	0.76348148	1639	Q8N138	ORMDL3	ORM1-like protein 3	yes	yes	1	1	0	16	0																1	11.762	11.762	2	0.0027225	4260	DP690-16	107.39	70.059			NaN	NaN	NaN	0	0	Median	1438800	1438800	0	10238	1639	9566	20041	48758	48758	2275	1	9606
MNVGVAHSEVNPNTR	0	1	Acetyl (Protein N-term);Oxidation (M)	1681.7842	0.78421693	1401	Q9P0S3;Q53FV1	ORMDL1;ORMDL2	ORM1-like protein 1;ORM1-like protein 2	yes	no	1	1	0	16	0																2	12.691	12.691	2	0.0023468	5554	DP690-16	112.02	84.379			NaN	NaN	NaN	0	0	Median	2474600	2474600	0	10239	1401	9567	20042;20043	48759;48760;48761	48760	2137	3	9606
MNVLADALK	1	0	Oxidation (M)	989.52157	0.52156686	968	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	1	0	14	3.46								1								3	15.926	15.926	2	0.025717	9794	DP690-16	83.998	34.575			0.92041	0.93803	7.6415	2	0	Median	1920499999.9999998	753250000	1167200000	10240	968	9568	20044;20045;20046;20047	48762;48763;48764;48765;48766;48767	48763	1485	6	9606
MNVLADALK	1	0	Unmodified	973.52665	0.52665224	968	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	8	0								1									17.414	17.414	2	0.0084999	10729	DP690-8	91.069	18.93			0.93997	1.061	NaN	1	0	Median	10731000	5311700	5419400	10241	968	9568	20048	48768;48769	48768		2	9606
MNYSGDQGQTIR	0	1	Oxidation (M)	1384.6041	0.60412729	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	1	0	2	0		1															10.929	10.929	2	0.00038628	3090	DP690-2	142.83	80.864			1.1142	1.1379	NaN	1	0	Median	2970200	1351100	1619100	10242	1437	9569	20049	48770;48771;48772;48773	48772	2150	4	9606
MPAYHSSLMDPDTK	1	0	Acetyl (Protein N-term)	1633.7116	0.71162883	140	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	1	0	0	7	0							1										11.747	11.747	2	0.03809	4154	DP690-7	71.614	31.696			NaN	NaN	NaN	0	0	Median	71026000	71026000	0	10243	140	9570	20050	48774	48774		1	9606
MPCQLHQVIVAR	0	1	Oxidation (M)	1466.7486	0.74862346	513	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	1	0	3	0			1														12.5	12.5	3	0.00014695	5329	DP690-3	116.77	89.796			1.0562	1.1844	NaN	1	0	Median	34495000	16570000	17925000	10244	513	9571	20051	48775;48776;48777	48776	646	3	9606
MPEDGLSDDKKPFK	3	0	Oxidation (M)	1621.7658	0.76577289	1119	Q05682	CALD1	Caldesmon	yes	yes	0	1	2	11	0											1						11.227	11.227	3	0.00010938	3929	DP690-11	113.54	92.48			0.6831	0.73991	NaN	1	0	Median	89080000	54894000	34186000	10245	1119	9572	20052	48778;48779;48780	48780	1735	3	9606
MPEDGLSDDKKPFK	3	0	Unmodified	1605.7709	0.77085827	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	2	11	0											1						12.366	12.366	3	0.010262	5607	DP690-11	69.314	49.818			0.69094	0.7484	NaN	1	0	Median	160780000	96802000	63977000	10246	1119	9572	20053	48781;48782	48781		2	9606
MPHGYDTQVGER	0	1	Unmodified	1388.6143	0.61429805	233	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	9.5	0.5									1	1							11.415	11.415	3	0.020468	3832	DP690-9	57.802	36.556			0.7066	0.88357	1.6471	2	0	Median	75437000	41901000	33537000	10247	233	9573	20054;20055	48783;48784	48784		2	9606
MPLATSTDHGHNLQTVQLLIK	1	0	Oxidation (M)	2332.2209	0.22091517	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										1							15.904	15.904	3	0.0042175	10865	DP690-10	61.015	44.296			0.66197	0.81505	NaN	1	0	Median	50966000	30220000	20747000	10248	1080	9574	20056	48785;48786	48786	1697	2	9606
MPLHTIIPLLQELTK	1	0	Oxidation (M)	1762.0063	0.0062779369	1317	Q15061	WDR43	WD repeat-containing protein 43	yes	yes	0	1	0	11	0											1						21.35	21.35	3	0.00058696	18430	DP690-11	92.265	44.492			0.78366	0.95494	NaN	1	0	Median	33236000	19004000	14232000	10249	1317	9575	20057	48787;48788;48789	48788	2007	3	9606
MPLHTIIPLLQELTK	1	0	Unmodified	1746.0114	0.011363315	1317	Q15061	WDR43	WD repeat-containing protein 43	yes	yes	0	0	0	11	0											1						22.213	22.213	3	2.7398E-05	19527	DP690-11	123.76	123.76			0.82207	1.0051	NaN	1	0	Median	23607000	13405000	10202000	10250	1317	9575	20058	48790;48791;48792	48791		3	9606
MPLSVFPYYASLGTALYGK	1	0	Oxidation (M)	2093.0544	0.054350342	1391	Q460N5	PARP14	Poly [ADP-ribose] polymerase 14	yes	yes	0	1	0	10	0										1							22.801	22.801	2	0.00011662	20500	DP690-10	136.6	100.83			NaN	NaN	NaN	0	0	Median	4652100	4652100	0	10251	1391	9576	20059	48793	48793	2129	1	9606
MPLTGVEPARMNR	0	2	Acetyl (Protein N-term);Oxidation (M)	1528.749	0.74901739	1489	Q6P1X5	TAF2	Transcription initiation factor TFIID subunit 2	yes	yes	1	1	1	7	0							1										17.572	17.572	2	0.020518	11475	DP690-7	74.376	23.467			NaN	NaN	NaN	0	0	Median	125750000	125750000	0	10252	1489	9577	20060	48794	48794	2175	1	9606
MPMFIVNTNVPR	0	1	2 Oxidation (M)	1449.7108	0.71084097	487	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	2	0	8	0								1									16.185	16.185	2	0.011728	9378	DP690-8	96.342	60.434			NaN	NaN	NaN	0	0	Median	3157900	3157900	0	10253	487	9578	20061	48795	48795	605;606	1	9606
MPSRKFADGEVVR	1	2	Acetyl (Protein N-term);Oxidation (M)	1548.7719	0.77186132	1292	Q14739	LBR	Lamin-B receptor	yes	yes	1	1	2	3	0			1														26.112	26.112	2	0.06941	21500	DP690-3	56.563	9.7669			NaN	NaN	NaN	0	0	Median	3459800	0	3459800	10254	1292	9579	20062	48796	48796		1	9606
MPTFSTPGAK	1	0	Oxidation (M)	1051.5008	0.50083142	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9	0									1								12.365	12.365	2	0.072861	5132	DP690-9	66.27	32.267			0.48586	0.61995	NaN	1	0	Median	9701200	6351300	3349900	10255	1145	9580	20063	48797	48797		1	9606
MPTKEDEEEDEPVVIK	2	0	Unmodified	1886.8819	0.88192486	2396	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	1	11	0											1						13.777	13.777	3	0.048801	7461	DP690-11	71.263	32.863			NaN	NaN	NaN	0	0	Median	29312000	29312000	0	10256	2396	9581	20064	48798	48798		1	9606
MPTTQETDGFQVK	1	0	Unmodified	1480.6868	0.68679429	1797	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	0	0	12	0												1					14.698	14.698	2	0.0023912	8641	DP690-12	91.469	69.689			0.55421	0.66407	NaN	1	0	Median	30822000	19467000	11355000	10257	1797	9582	20065	48799;48800	48799		2	9606
MQALEPYPANESSK	1	0	Oxidation (M)	1579.7188	0.7188227	162	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	1	0	8	4				1								1					13.134	13.134	2	7.9262E-09	6330	DP690-12	198.81	124.93			0.65839	0.75037	7.5789	2	0	Median	39959000	21052000	18906000	10258	162	9583	20066;20067	48801;48802;48803;48804;48805;48806	48801	184	6	9606
MQALEPYPANESSK	1	0	Unmodified	1563.7239	0.72390808	162	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	12	0												1					14.427	14.427	2	0.0052606	8179	DP690-12	123.67	78.534			NaN	NaN	NaN	0	0	Median	0	0	0	10259	162	9583	20068	48807	48807		1	9606
MQALTYLQR	0	1	Oxidation (M)	1138.5805	0.58047873	1772	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	1	0	2	0		1															14.488	14.488	2	0.024896	7110	DP690-2	84.498	50.245			1.0463	1.0843	NaN	1	0	Median	4431900	2352200	2079700	10260	1772	9584	20069	48808	48808	2336	1	9606
MQAQAMLEGSPQLNMVGLFR	0	1	3 Oxidation (M)	2268.0701	0.070093535	1479	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	3	0	13	0													2				18.739	18.739	2	5.3758E-13	13824	DP690-13	178.67	137.57			0.72573	0.89519	NaN	1	0	Median	19829000	12555000	7274600	10261	1479	9585	20070;20071	48809;48810;48811;48812	48810	2165;2166;2167	4	9606
MQAQMQMQMQGGDGDGGALGHHV	0	0	4 Oxidation (M)	2446.9722	0.97224676	1310	Q15019	SEPT2	Septin-2	yes	yes	0	4	0	14.7	0.943														2		1	10.714	10.714	3	8.5154E-10	3113	DP690-14	154.74	143.43			NaN	NaN	NaN	0	0	Median	0	0	0	10262	1310	9586	20072;20073;20074	48813;48814;48815;48816;48817	48814	1999;2000;2001;2002	5	9606
MQAQMQMQMQGGDGDGGALGHHV	0	0	3 Oxidation (M)	2430.9773	0.97733214	1310	Q15019	SEPT2	Septin-2	yes	yes	0	3	0	14	0														1			12.003	12.003	3	6.3984E-08	4556	DP690-14	136.43	128.66			NaN	NaN	NaN	0	0	Median	0	0	0	10263	1310	9586	20075	48818;48819	48818	1999;2000;2001;2002	2	9606
MQAQMQMQMQGGDGDGGALGHHV	0	0	2 Oxidation (M)	2414.9824	0.98241751	1310	Q15019	SEPT2	Septin-2	yes	yes	0	2	0	14	0														2			12.972	12.972	3	2.0032E-12	6395	DP690-14	161.35	149.29			NaN	NaN	NaN	0	0	Median	0	0	0	10264	1310	9586	20076;20077	48820;48821;48822;48823;48824;48825;48826	48824	1999;2000;2001;2002	7	9606
MQAQMQMQMQGGDGDGGALGHHV	0	0	Oxidation (M)	2398.9875	0.98750289	1310	Q15019	SEPT2	Septin-2	yes	yes	0	1	0	14	0														1			13.83	13.83	3	8.9026E-18	7244	DP690-14	187.56	159.36			NaN	NaN	NaN	0	0	Median	0	0	0	10265	1310	9586	20078	48827;48828;48829	48827	1999;2000;2001;2002	3	9606
MQAQMQMQMQGGDGDGGALGHHV	0	0	Unmodified	2382.9926	0.99258827	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	14	0														1			15.055	15.055	3	1.6893E-12	9010	DP690-14	166.52	157.99			NaN	NaN	NaN	0	0	Median	0	0	0	10266	1310	9586	20079	48830;48831	48830		2	9606
MQDNAPLMTALAK	1	0	Oxidation (M)	1418.6898	0.68977118	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	1	0	12	0												1					16.843	16.843	2	0.020481	11540	DP690-12	73.9	46.257			1.1517	1.3759	NaN	1	0	Median	35276000	16642000	18634000	10267	417	9587	20080	48832;48833	48832	468	2	9606
MQDTMEENSESALR	0	1	2 Oxidation (M)	1671.6716	0.67161451	515	P17706	PTPN2	Tyrosine-protein phosphatase non-receptor type 2	yes	yes	0	2	0	7	3.46					3								1				11.439	11.439	2	3.2533E-05	3894	DP690-13	155.97	128.54			NaN	NaN	NaN	0	0	Median	2407500	2407500	0	10268	515	9588	20081;20082;20083;20084	48834;48835;48836;48837	48834	647;648	4	9606
MQDTMEENSESALR	0	1	Oxidation (M)	1655.6767	0.67669989	515	P17706	PTPN2	Tyrosine-protein phosphatase non-receptor type 2	yes	yes	0	1	0	13	0													1				12.278	12.278	2	0.0021402	4990	DP690-13	164.9	132.17			NaN	NaN	NaN	0	0	Median	0	0	0	10269	515	9588	20085	48838	48838	647;648	1	9606
MQEELNAQVEK	1	0	Oxidation (M)	1333.6184	0.61838038	1978	Q9BQE4	VIMP	Selenoprotein S	yes	yes	0	1	0	16	0																1	11.672	11.672	2	0.011665	4335	DP690-16	102.53	48.78			NaN	NaN	NaN	0	0	Median	1863600	1863600	0	10270	1978	9589	20086	48839	48839	2521	1	9606
MQEHSDQVPVGNIPR	0	1	Unmodified	1705.8206	0.82060243	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	11	0											1						13.241	13.241	3	0.01978	6855	DP690-11	55.815	31.984			0.76699	0.91696	NaN	1	0	Median	116520000	77152000	39365000	10271	653	9590	20087	48840;48841;48842	48842		3	9606
MQFESSSYEGYFLACEK	1	0	Oxidation (M)	2090.8601	0.86014356	1245	Q14116	IL18	Interleukin-18	yes	yes	0	1	0	7	0							1										18.825	18.825	2	8.9496E-19	13151	DP690-7	229.97	200.04			0.93316	1.0193	NaN	1	0	Median	14392000	7575000	6817000	10272	1245	9591	20088	48843;48844;48845	48844	1893	3	9606
MQGEAHPSASLIDR	0	1	Acetyl (Protein N-term);Oxidation (M)	1568.7253	0.72530506	1926	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	1	1	0	12	0												1					13.962	13.962	2	0.0068191	7590	DP690-12	99.011	57.471			NaN	NaN	NaN	0	0	Median	27578000	0	27578000	10273	1926	9592	20089	48846	48846	2458	1	9606
MQGILLLVFAK	1	0	Oxidation (M)	1247.7312	0.73116571	1995	Q9BT40	INPP5K	Inositol polyphosphate 5-phosphatase K	yes	yes	0	1	0	13	0													1				22.034	22.034	2	0.00017177	18022	DP690-13	126.24	66.124			0.81436	0.91905	NaN	1	0	Median	6403000	2887400	3515600	10274	1995	9593	20090	48847;48848	48848	2533	2	9606
MQGQEAVLAMSSR	0	1	2 Oxidation (M)	1438.6544	0.65444831	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	2	0	9.5	0.5									1	1							11.875	11.875	2	0.0016358	4401	DP690-9	101.39	80.556			0.79629	0.99601	9.4628	2	0	Median	39874000	19087000	20787000	10275	1329	9594	20091;20092	48849;48850;48851;48852;48853;48854;48855;48856	48855	2065;2066	8	9606
MQGQEAVLAMSSR	0	1	Oxidation (M)	1422.6595	0.65953368	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	0	10	0										1							13.005	13.005	2	0.01352	6592	DP690-10	75.739	58.518			1.1577	1.4501	NaN	1	0	Median	45890000	19712000	26178000	10276	1329	9594	20093	48857;48858;48859	48857	2065;2066	3	9606
MQKEITALAPSTMK	2	0	2 Oxidation (M)	1579.795	0.79496453	926;1023;1029	P60709;P63261;P68032;P68133;P63267;P62736	ACTB;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	2	1	14	0														1			11.746	11.746	3	0.045687	4478	DP690-14	81.327	30.453			NaN	NaN	NaN	0	0	Median	16599000	0	16599000	10277	926;1023;1029	9595	20094	48860	48860	1425	1	9606
MQLLEIITTEK	1	0	Oxidation (M)	1333.7163	0.71630351	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	1	0	3	0			1														18.592	18.592	2	0.0090622	13317	DP690-3	87.298	87.298			1.0538	1.1081	NaN	1	0	Median	7267400	3074300	4193100	10278	713	9596	20095	48861;48862	48861	1043	2	9606
MQLSAELQSDTEEILSK	1	0	Oxidation (M)	1936.9299	0.92993769	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	9.5	0.5									1	1							20.294	20.294	2	3.7392E-12	17073	DP690-10	183.28	142.17			NaN	NaN	NaN	0	0	Median	23923000	0	23923000	10279	269	9597	20096;20097	48863;48864;48865;48866	48863	276	4	9606
MQMLEDEDDLAYAETEKK	2	0	2 Oxidation (M)	2189.9344	0.93443072	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	2	1	9	0									1								14.621	14.621	3	6.0388E-05	7987	DP690-9	110.34	110.34			0.84577	1.0097	NaN	1	0	Median	13778000	7092200	6685800	10280	1264	9598	20098	48867;48868	48867	1920;1921	2	9606
MQMPQGNPLLLSHTLQELLAR	0	1	2 Oxidation (M)	2421.2508	0.25083509	2508	Q9Y5X2	SNX8	Sorting nexin-8	yes	yes	0	2	0	12	0												1					21.944	21.944	3	1.101E-06	18231	DP690-12	128.74	101.07			0.85131	1.0365	NaN	1	0	Median	10668000	5888500	4779500	10281	2508	9599	20099	48869;48870;48871	48869	2938;2939	3	9606
MQNDAGEFVDLYVPR	0	1	Acetyl (Protein N-term);Oxidation (M)	1810.8196	0.81959938	1020	P63220	RPS21	40S ribosomal protein S21	yes	yes	1	1	0	16	0																2	22.337	22.337	2	0.0011214	17244	DP690-16	127.56	90.875			NaN	NaN	NaN	0	0	Median	1111500	1111500	0	10282	1020	9600	20100;20101	48872;48873;48874	48872	1547	3	9606
MQNDTAENETTEKEEK	2	0	Unmodified	1895.8055	0.80546546	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	1	11	0											3						10.298	10.298	3	3.3748E-34	2534	DP690-11	251.91	210.58			0.93598	1.0291	NaN	1	0	Median	364770000	177470000	187300000	10283	1119	9601	20102;20103;20104	48875;48876;48877;48878	48877		4	9606
MQNDTAENETTEKEEKSESR	2	1	Oxidation (M)	2371.0081	0.008141023	1119	Q05682	CALD1	Caldesmon	yes	yes	0	1	2	11	0											1						10.289	10.289	4	0.033308	2527	DP690-11	65.022	36.94			NaN	NaN	NaN	0	0	Median	23847000	23847000	0	10284	1119	9602	20105	48879	48879	1736	1	9606
MQPDQQVVINCAIVR	0	1	Oxidation (M)	1785.8866	0.88657351	821	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	1	0	13	0													2				16.22	16.22	2	9.4205E-07	10418	DP690-13	189.57	157.24			1.0691	1.319	NaN	1	0	Median	20061000	9262300	10799000	10285	821	9603	20106;20107	48880;48881;48882;48883;48884;48885	48880	1237	6	9606
MQPDQQVVINCAIVR	0	1	Unmodified	1769.8917	0.89165888	821	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	13	0													1				16.958	16.958	2	0.00096459	11435	DP690-13	119.27	74.71			1.1562	1.4203	NaN	1	0	Median	27436000	10942000	16494000	10286	821	9603	20108	48886;48887;48888	48887		3	9606
MQQENMKPQEQLTLEPYER	1	1	2 Oxidation (M)	2423.1097	0.10970974	558	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	2	1	14	0														1			14.441	14.441	3	0.071136	8087	DP690-14	54.964	54.964			0.71461	0.89897	NaN	1	0	Median	28384000	12795000	15589000	10287	558	9604	20109	48889	48889		0	9606
MQQHFEFEYQTK	1	0	Oxidation (M)	1630.7086	0.70859237	418	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	1	0	4	0				1													13.958	13.958	2	0.006268	7171	DP690-4	110.84	75.951			NaN	NaN	NaN	0	0	Median	0	0	0	10288	418	9605	20110	48890	48890	476	1	9606
MQQLEQMLTALDQMR	0	1	3 Oxidation (M)	1882.8587	0.85870378	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	3	0	3	0			1														17.262	17.262	2	0.0003244	11649	DP690-3	117.2	72.435			0.73231	0.81701	NaN	1	0	Median	6515100	3944100	2571000	10289	708	9606	20111	48891;48892;48893;48894	48891	1035;1036;1037	4	9606
MQQNIQELEEQLEEEESAR	0	1	Unmodified	2332.0489	0.048883626	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	10	0										1							20.099	20.099	2	7.5575E-23	16901	DP690-10	225.33	197.66			0.75803	0.94472	NaN	1	0	Median	23640000	13989000	9651600	10290	668	9607	20112	48895	48895		1	9606
MQQNIQELEEQLEEEESAR	0	1	Oxidation (M)	2348.0438	0.043798248	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2.67	0.471		1	2														19.605	19.605	2	3.2845E-70	13052	DP690-2	355.13	287.61			0.98054	1.0223	NaN	1	0	Median	5060700	2282400	2778300	10291	668	9607	20113;20114;20115	48896;48897;48898;48899;48900;48901	48897	955	6	9606
MQQQLDEYQELLDIK	1	0	Oxidation (M)	1908.9139	0.91389369	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	1	0	12	0.632											1	3	1				20.267	20.267	2	9.5638E-31	16215	DP690-12	318.49	199.16			0.79123	0.92279	1.2352	2	0	Median	251590000	144140000	107450000	10292	359	9608	20116;20117;20118;20119;20120	48902;48903;48904;48905;48906;48907;48908;48909;48910	48905	372	9	9606
MQQQLDEYQELLDIK	1	0	Unmodified	1892.919	0.91897907	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.5	0.5											1	1					20.578	20.578	2	1.3689E-06	17408	DP690-11	180.24	131.67			0.79642	0.95659	9.0057	2	0	Median	115320000	56976000	58339000	10293	359	9608	20121;20122	48911;48912;48913;48914;48915;48916;48917;48918;48919	48912		9	9606
MQQYDLQGQPYGTR	0	1	Oxidation (M)	1699.7624	0.76241885	1812	Q969V3	NCLN	Nicalin	yes	yes	0	1	0	12	0												1					14.059	14.059	2	0.00013673	7696	DP690-12	158.01	130.91			0.99268	1.1899	NaN	1	0	Median	22854000	10743000	12111000	10294	1812	9609	20123	48920;48921;48922	48920	2389	3	9606
MQQYDLQGQPYGTR	0	1	Unmodified	1683.7675	0.76750423	1812	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	12.7	0.471												1	2				14.75	14.75	2	1.7584E-11	8682	DP690-12	186.74	126.1			NaN	NaN	NaN	0	0	Median	10386000	0	10386000	10295	1812	9609	20124;20125;20126	48923;48924;48925;48926	48924		4	9606
MQTDKPFDQTTISLQMGTNK	2	0	2 Oxidation (M)	2315.0773	0.077346983	1330	Q15417	CNN3	Calponin-3	yes	yes	0	2	1	11	4.1						2								2	1		14.826	14.826	2;3	4.3631E-21	8733	DP690-14	217.32	179.53			0.80839	0.83569	7.6711	3	0	Median	258590000	146810000	111780000	10296	1330	9610	20127;20128;20129;20130;20131	48927;48928;48929;48930;48931;48932;48933;48934;48935;48936;48937;48938;48939	48932	2075;2076	13	9606
MQTDKPFDQTTISLQMGTNK	2	0	Oxidation (M)	2299.0824	0.082432361	1330	Q15417	CNN3	Calponin-3	yes	yes	0	1	1	14	0														4			15.719	15.719	2;3	1.1524E-80	9436	DP690-14	295.71	252.92			0.72786	0.81182	0.033625	2	0	Median	472100000	277130000	194960000	10297	1330	9610	20132;20133;20134;20135	48940;48941;48942;48943;48944;48945;48946;48947;48948;48949;48950;48951;48952	48949	2075;2076	13	9606
MQTDKPFDQTTISLQMGTNK	2	0	Unmodified	2283.0875	0.087517738	1330	Q15417	CNN3	Calponin-3	yes	yes	0	0	1	14	0														3			16.837	16.837	3	2.6295E-30	11391	DP690-14	208.87	181.39			NaN	NaN	NaN	0	0	Median	208550000	119100000	89455000	10298	1330	9610	20136;20137;20138	48953;48954;48955;48956;48957;48958;48959;48960	48960		8	9606
MQTYQDAESR	0	1	Unmodified	1227.519	0.51900068	2135	Q9H857	NT5DC2	5'-nucleotidase domain-containing protein 2	yes	yes	0	0	0	12	0												1					11.057	11.057	2	8.7863E-05	3609	DP690-12	158.76	139.97			0.8116	0.97263	NaN	1	0	Median	23360000	12585000	10776000	10299	2135	9611	20139	48961;48962;48963	48963		3	9606
MQVDQEEPHVEEQQQQTPAENK	1	0	Oxidation (M)	2637.1613	0.16128762	654	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	1	0	3	0			1														11.581	11.581	3	0.00047231	4192	DP690-3	88.282	78.301			0.94223	0.98716	NaN	1	0	Median	4090600	2077500	2013100	10300	654	9612	20140	48964;48965	48965	921	2	9606
MREDYDSVEQDGDEPGPQR	0	2	Oxidation (M)	2237.9131	0.91311843	2505	Q9Y5S9	RBM8A	RNA-binding protein 8A	yes	yes	0	1	1	14.2	3.12								1							1	3	12.48	12.48	3	4.1029E-05	5304	DP690-16	118.23	113.96			0.83251	0.89126	27.84	2	0	Median	34196000	17356000	16840000	10301	2505	9613	20141;20142;20143;20144;20145	48966;48967;48968;48969;48970;48971;48972;48973;48974;48975;48976;48977	48973	2936	12	9606
MREIVHIQAGQCGNQIGTK	1	1	Oxidation (M)	2155.0626	0.062640392	2010	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	1	1	7.67	3.77					2								1				12.075	12.075	3;4	1.2274E-05	4840	DP690-13	124.84	85.929			1.1495	1.4063	15.041	3	0	Median	70087000	30233000	39854000	10302	2010	9614	20146;20147;20148	48978;48979;48980;48981;48982;48983;48984;48985;48986;48987	48980	2548	10	9606
MREIVHLQAGQCGNQIGAK	1	1	Unmodified	2109.0572	0.057161084	1034;370	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	1	8.67	4.11					5								3	1			12.992	12.992	3;4	4.0523E-20	5635	DP690-5	202.84	0			1.001	1.0245	12.113	6	0	Median	1673499999.9999998	707770000	965740000	10303	1034;370	9615	20149;20150;20151;20152;20153;20154;20155;20156;20157	48988;48989;48990;48991;48992;48993;48994;48995;48996;48997;48998;48999;49000;49001;49002;49003;49004;49005;49006;49007;49008;49009;49010	49010		23	9606
MRIESLSSQLSNLQK	1	1	Oxidation (M)	1748.9091	0.90908309	544	P20700	LMNB1	Lamin-B1	yes	yes	0	1	1	12	0												1					15.546	15.546	2	0.069253	9811	DP690-12	93.649	47.586			NaN	NaN	NaN	0	0	Median	8885800	8885800	0	10304	544	9616	20158	49011	49011		1	9606
MRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGR	0	2	Oxidation (M)	3489.5096	0.50956479	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	1	11	4.32					1								1		1		20.98	20.98	3	1.8662E-11	15551	DP690-5	137.21	134.03			0.80647	0.85879	4.1878	2	0	Median	73047000	38599000	34449000	10305	856	9617	20159;20160;20161	49012;49013;49014;49015;49016;49017;49018	49017	1299	7	9606
MRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGR	0	2	Unmodified	3473.5147	0.51465017	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	1	13	0													1				21.295	21.295	3	1.686E-15	17076	DP690-13	131.68	108.71			NaN	NaN	NaN	0	0	Median	0	0	0	10306	856	9617	20162	49019	49019		1	9606
MRYVASYLLAALGGNSSPSAK	1	1	Oxidation (M)	2171.1045	0.10448843	384	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	1	1	16	0																1	19.644	19.644	3	0.0030243	14269	DP690-16	98.684	64.848			NaN	NaN	NaN	0	0	Median	7681000	7681000	0	10307	384	9618	20163	49020;49021	49020	406	2	9606
MSAIPAEESDQLLIR	0	1	Unmodified	1671.8502	0.85017123	2370	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	13	0													1				15.979	15.979	3	0.071823	10182	DP690-13	26.771	0			0.76037	0.87178	NaN	1	0	Median	215160000	115160000	100000000	10308	2370	9619	20164	49022	49022		1	9606
MSATFIGNSTAIQELFK	1	0	Oxidation (M)	1872.9291	0.92914983	1034;2017	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	8.43	4.1				1	1	1	1	1					1			1	21.561	21.561	2	1.1007E-39	17363	DP690-13	319.37	9.0281			1.041	1.1222	13.494	6	0	Median	710560000	344420000	366140000	10309	1034;2017	9620	20165;20166;20167;20168;20169;20170;20171	49023;49024;49025;49026;49027;49028;49029;49030;49031;49032;49033;49034;49035;49036;49037;49038;49039;49040;49041	49023	1572	19	9606
MSATFIGNSTAIQELFK	1	0	Unmodified	1856.9342	0.93423521	1034;2017	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	13	0													1				22.244	22.244	2	0.067064	18409	DP690-13	89.46	7.258			0.82007	0.95135	NaN	1	0	Median	37325000	18323000	19002000	10310	1034;2017	9620	20172	49042	49042		0	9606
MSATFIGNSTAIQELFKR	1	1	Oxidation (M)	2029.0303	0.030260856	1034;2017	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	1	13	0													1				19.823	19.823	3	0.00017333	15223	DP690-13	95.409	13.686			0.77679	0.92874	NaN	1	0	Median	41968000	24195000	17774000	10311	1034;2017	9621	20173	49043	49043	1572	1	9606
MSDLTPVHFTPLDSSVDR	0	1	Unmodified	2015.9622	0.96224087	2454	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	14	0														1			18.052	18.052	3	0.00019178	13066	DP690-14	99.915	78.381			1.2517	1.4865	NaN	1	0	Median	117860000	50915000	66948000	10312	2454	9622	20174	49044;49045	49044		2	9606
MSDLTPVHFTPLDSSVDR	0	1	Oxidation (M)	2031.9572	0.95715549	2454	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	1	0	6	0						1											17.367	17.367	3	0.00061524	11018	DP690-6	87.157	68.235			0.58364	0.6686	NaN	1	0	Median	6101700	3684400	2417200	10313	2454	9622	20175	49046;49047	49047	2904	2	9606
MSEEDEQGWCQGQLQSGR	0	1	Unmodified	2123.8637	0.86366581	2376	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	13	0													2				15.137	15.137	2	2.5306E-10	8968	DP690-13	184.11	143.61			NaN	NaN	NaN	0	0	Median	0	0	0	10314	2376	9623	20176;20177	49048;49049	49049		2	9606
MSEHYWTPQSNVSNETSTGK	1	0	Oxidation (M)	2297.9859	0.98588944	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	1	0	2	0		1															13.443	13.443	3	0.0045097	5888	DP690-2	63.044	48.275			0.68961	0.6849	NaN	1	0	Median	3318800	1715600	1603200	10315	2418	9624	20178	49050;49051;49052	49050	2848	3	9606
MSGECAPNVSVSVSTSHTTISGGGSR	0	1	Oxidation (M)	2580.1544	0.1544281	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	3	1		1		1													13.798	13.798	3	1.1431E-16	6961	DP690-4	172.34	140.98		+	NaN	NaN	NaN	0	0	Median	10486000	10486000	0	10316	369	9625	20179;20180	49053;49054;49055	49054	385	3	9606
MSISEGTVSDK	1	0	Oxidation (M)	1168.5282	0.52816838	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	1	0	2	0		1															10.906	10.906	2	0.0066275	3097	DP690-2	90.149	55.976			0.93987	0.92441	NaN	1	0	Median	1610900	772570	838340	10317	763	9626	20181	49056	49056	1137	1	9606
MSLLQLVEILQSK	1	0	Oxidation (M)	1516.8535	0.85346569	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	1	0	10.3	0.943									1		2						23.959	23.959	2	2.4631E-22	21672	DP690-11	250.26	198.09			1.0485	1.2959	NaN	1	0	Median	17530000	10084000	7445200	10318	65	9627	20182;20183;20184	49057;49058;49059;49060;49061;49062;49063;49064	49061	73	8	9606
MSLLQLVEILQSK	1	0	Unmodified	1500.8586	0.85855107	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	10	1									1		1						25.221	25.221	2	8.7135E-11	23158	DP690-11	258.01	213.58			0.82358	0.97131	5.9914	2	0	Median	19364000	10091000	9273200	10319	65	9627	20185;20186	49065;49066;49067;49068;49069	49068		5	9606
MSLPDVDLDLKGPK	2	0	Oxidation (M)	1542.7963	0.79634474	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	1	9.5	0.5									1	1							16.589	16.589	3	0.00029273	10610	DP690-9	103.76	66.817			0.76246	0.90164	1.4768	2	0	Median	173540000	105830000	67705000	10320	1145	9628	20187;20188	49070;49071;49072;49073	49072	1795	4	9606
MSLPDVDLDLKGPK	2	0	Unmodified	1526.8014	0.80143012	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	10	0										1							18.118	18.118	3	0.0015774	14055	DP690-10	85.287	65.547			0.75156	0.94065	NaN	1	0	Median	77434000	31819000	45615000	10321	1145	9628	20189	49074	49074		1	9606
MSLSSMEVDVQAPR	0	1	2 Oxidation (M)	1580.7174	0.71744249	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	2	0	9	0									1								14.143	14.143	2	0.0023558	7293	DP690-9	119.27	88.882			NaN	NaN	NaN	0	0	Median	3587900	3587900	0	10322	1602	9629	20190	49075;49076	49075	2259;2260	2	9606
MSMKEVDEQMLNVQNK	2	0	3 Oxidation (M)	1970.8747	0.87474777	1034;406;2017	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	3	1	10.2	4.17					3	1		1					4		1	1	11.225	11.225	2;3	8.8787E-13	3650	DP690-5	207.08	191.2			0.98958	1.0817	11.41	9	0	Median	324200000	195170000	129030000	10323	406;1034;2017	9630	20191;20192;20193;20194;20195;20196;20197;20198;20199;20200;20201	49077;49078;49079;49080;49081;49082;49083;49084;49085;49086;49087;49088;49089;49090;49091;49092;49093;49094;49095;49096;49097;49098;49099;49100;49101;49102;49103;49104;49105;49106;49107;49108;49109	49098	441;443;444	33	9606
MSMKEVDEQMLNVQNK	2	0	2 Oxidation (M)	1954.8798	0.87983315	1034;406;2017	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	2	1	13	0													3				13.011	13.011	2;3	3.2926E-08	6517	DP690-13	187.74	187.74			0.89758	1	34.557	3	0	Median	197010000	102510000	94494000	10324	406;1034;2017	9630	20202;20203;20204	49110;49111;49112;49113;49114;49115;49116	49112	441;443;444	7	9606
MSMKEVDEQMLNVQNK	2	0	Oxidation (M)	1938.8849	0.88491853	1034;406;2017	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	1	13	0													1				14.463	14.463	3	0.0014867	8032	DP690-13	76.82	64.157			0.72664	0.82108	NaN	1	0	Median	37767000	21818000	15949000	10325	406;1034;2017	9630	20205	49117;49118	49117	441;443;444	2	9606
MSPKPELTEEQKQEIR	2	1	Oxidation (M)	1957.9779	0.97789093	716	P41208	CETN2	Centrin-2	yes	yes	0	1	2	16	0																2	10.793	10.793	3;4	0.0013427	3354	DP690-16	78.326	62.203			0.67291	0.74338	12.532	2	0	Median	18940000	10783000	8157600	10326	716	9631	20206;20207	49119;49120;49121	49119	1046	3	9606
MSPYKDILETHLR	1	1	Oxidation (M)	1617.8185	0.81847717	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	9.5	0.5									1	1							14.841	14.841	3	2.6095E-05	8250	DP690-9	174.46	145.39			0.77819	0.89624	7.051	2	0	Median	472050000	249990000	222050000	10327	1046	9632	20208;20209	49122;49123;49124;49125;49126;49127;49128;49129;49130	49130	1623	9	9606
MSPYKDILETHLR	1	1	Unmodified	1601.8236	0.82356254	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.5	0.5									1	1							15.583	15.583	3	5.0991E-05	9262	DP690-9	120.55	104.52			0.79573	0.92602	7.9079	2	0	Median	271270000	133420000	137860000	10328	1046	9632	20210;20211	49131;49132;49133;49134;49135;49136	49135		6	9606
MSQVAPSLSALIGEAVGAR	0	1	Oxidation (M)	1871.9775	0.977497	95	O00567	NOP56	Nucleolar protein 56	yes	yes	0	1	0	12	0												1					22.787	22.787	2	2.9212E-09	19229	DP690-12	147.35	127.51			0.74192	0.90645	NaN	1	0	Median	5975900	3238200	2737600	10329	95	9633	20212	49137;49138;49139;49140;49141	49141	103	5	9606
MSSHTETSSFLQTLTGR	0	1	Unmodified	1881.8891	0.88907593	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										1							17.802	17.802	3	0.0013045	13571	DP690-10	75.376	53.535			0.9831	1.2313	NaN	1	0	Median	49616000	24564000	25052000	10330	1901	9634	20213	49142	49142		1	9606
MSSHTETSSFLQTLTGR	0	1	Oxidation (M)	1897.884	0.88399055	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	1	0	2	0		1															17.498	17.498	3	0.058828	10771	DP690-2	43.208	32.71			0.9777	0.99879	NaN	1	0	Median	2796200	1453600	1342600	10331	1901	9634	20214	49143	49143		1	9606
MSSNSNFSEVTLAGLASK	1	0	Oxidation (M)	1857.8778	0.87784254	323	O95425	SVIL	Supervillin	yes	yes	0	1	0	10	0										1							18.488	18.488	2	2.8702E-13	14581	DP690-10	187.08	134.69			NaN	NaN	NaN	0	0	Median	22721000	22721000	0	10332	323	9635	20215	49144;49145	49144	337	2	9606
MSSTFIGNSTAIQELFK	1	0	Oxidation (M)	1888.9241	0.92406445	1217	Q13509	TUBB3	Tubulin beta-3 chain	yes	yes	0	1	0	13	0													1				21.418	21.418	2	2.9508E-08	17302	DP690-13	177.81	138.23			0.83704	0.97246	NaN	1	0	Median	33076000	17274000	15802000	10333	1217	9636	20216	49146	49146	1863	1	9606
MSTEEIIQR	0	1	Oxidation (M)	1121.5387	0.53867349	519	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	1	0	5	0					2												12.294	12.294	2	0.00023686	4834	DP690-5	153.04	92.918			1.0996	1.1552	NaN	1	0	Median	30615000	18482000	12133000	10334	519	9637	20217;20218	49147;49148;49149;49150	49150	662	4	9606
MSTSPEAFLALR	0	1	Oxidation (M)	1337.6649	0.66493664	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	8.57	2.72		1							2	4							18.844	18.844	2	9.8545E-05	14781	DP690-10	166.33	136.85			0.73996	0.80767	10.221	4	0	Linear	311430000	192380000	119050000	10335	1046	9638	20219;20220;20221;20222;20223;20224;20225	49151;49152;49153;49154;49155;49156;49157;49158;49159;49160;49161	49154	1624	10	9606
MSTSPEAFLALR	0	1	Unmodified	1321.67	0.67002202	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								19.507	19.507	2	1.1185E-07	14174	DP690-9	200.86	163.31			0.78945	0.93506	NaN	1	0	Median	45344000	23927000	21418000	10336	1046	9638	20226	49162;49163;49164;49165;49166;49167	49163		6	9606
MSVFPRDWMVMR	0	2	3 Oxidation (M)	1601.7153	0.71527442	1633	Q8IZD9	DOCK3	Dedicator of cytokinesis protein 3	yes	yes	0	3	1	5	0					1												15.196	15.196	2	0.024402	8256	DP690-5	73.233	53.626			NaN	NaN	NaN	0	0	Median	27241000	27241000	0	10337	1633	9639	20227	49168	49168	2270;2271;2272	1	9606
MSVFQTQLPTLGVGALKPR	1	1	Oxidation (M)	2058.1296	0.12958097	327	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	1	1	3	0			1														19.018	19.018	3	0.0028168	13894	DP690-3	124.04	103.45			NaN	NaN	NaN	0	0	Median	0	0	0	10338	327	9640	20228	49169	49169	341	1	9606
MSVQPTVSLGGFEITPPVVLR	0	1	Oxidation (M)	2242.2031	0.20313984	397	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	12.5	3.99						1		1						1	1	2	22.441	22.441	2	9.318E-29	17169	DP690-16	220.25	200.12			0.68202	0.77038	14.493	5	0	Median	266840000	163490000	103350000	10339	397	9641	20229;20230;20231;20232;20233;20234	49170;49171;49172;49173;49174;49175;49176;49177;49178;49179;49180;49181;49182;49183;49184;49185;49186;49187;49188;49189;49190;49191	49180	428	22	9606
MSVQPTVSLGGFEITPPVVLR	0	1	Unmodified	2226.2082	0.20822522	397	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	14	0														1			22.796	22.796	2	1.4613E-29	19024	DP690-14	227.91	227.91			0.66527	0.80132	NaN	1	0	Median	69625000	41254000	28371000	10340	397	9641	20235	49192;49193;49194;49195;49196;49197;49198	49194		7	9606
MTDQEAIQDLWQWR	0	1	Oxidation (M)	1834.8308	0.83083277	397	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	14	0														1			21.553	21.553	2	5.576300000000001E-75	17515	DP690-14	389.19	309.2			0.79152	0.88588	NaN	1	0	Median	384580000	279930000	104650000	10341	397	9642	20236	49199;49200;49201;49202	49201	429	4	9606
MTDQEAIQDLWQWR	0	1	Unmodified	1818.8359	0.83591814	397	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	14	0														1			22.491	22.491	2	3.7435E-16	18703	DP690-14	268.14	222.24			0.76795	0.8911	NaN	1	0	Median	187210000	99717000	87492000	10342	397	9642	20237	49203;49204;49205;49206	49205		4	9606
MTELFQSLADLNNVR	0	1	Oxidation (M)	1765.8669	0.86688392	765	P46939	UTRN	Utrophin	yes	yes	0	1	0	10	0										1							20.794	20.794	2	0.012968	17874	DP690-10	131.43	68.025			0.94024	1.1707	NaN	1	0	Median	21014000	10387000	10627000	10343	765	9643	20238	49207	49207	1140	0	9606
MTENSTSAPAAKPK	2	0	Acetyl (Protein N-term)	1473.7133	0.71334339	403	P07305	H1F0	Histone H1.0;Histone H1.0, N-terminally processed	yes	yes	1	0	1	15	0															1		11.071	11.071	2	8.0221E-05	3567	DP690-15	136.96	117.6			0.57393	0.65428	NaN	1	0	Median	7026600	3194900	3831800	10344	403	9644	20239	49208;49209;49210;49211;49212;49213	49208		6	9606
MTENTLLFAFVEGTLAQAVK	1	0	Oxidation (M)	2198.1293	0.1293062	2217	Q9NU22	MDN1	Midasin	yes	yes	0	1	0	9	0									2								26.323	26.323	2	7.6777E-10	21996	DP690-9	157.86	134.69			0.96966	1.1309	37.041	2	0	Median	2501800	1333500	1168300	10345	2217	9645	20240;20241	49214;49215;49216;49217;49218;49219;49220;49221;49222;49223	49223	2699	10	9606
MTEQHFPHPIQSFSPESMPEPLNGPINILGEGR	0	1	2 Oxidation (M)	3717.7556	0.75556592	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	2	0	3	0			1														19.087	19.087	4	5.6064E-08	13855	DP690-3	97.312	87.996			0.57075	0.64087	NaN	1	0	Median	7948700	5364000	2584700	10346	134	9646	20242	49224;49225	49224	154;155	2	9606
MTGESECLNPSTQSR	0	1	Oxidation (M)	1711.7141	0.71414803	2102	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	1	0	2	0		1															11.656	11.656	2	0.00056959	3778	DP690-2	110.31	82.878			0.53708	0.54947	NaN	1	0	Median	1502700	957030	545630	10347	2102	9647	20243	49226;49227;49228;49229	49226	2614	4	9606
MTHNLLLNYGLYR	0	1	Oxidation (M)	1622.8239	0.8238969	1222;1788	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	1	0	9.33	3.77				1								2					17.202	17.202	2;3	3.3675E-05	12053	DP690-12	135.02	117.43			0.84484	0.96903	8.4926	3	0	Plateau	185960000	100340000	85617000	10348	1222;1788	9648	20244;20245;20246	49230;49231;49232;49233;49234;49235;49236;49237;49238;49239;49240;49241	49236	1866	12	9606
MTHNLLLNYGLYR	0	1	Unmodified	1606.829	0.82898227	1222;1788	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	0	12	0												1					17.645	17.645	3	1.1545E-05	12615	DP690-12	148.89	148.89			0.77827	0.87353	NaN	1	0	Median	221770000	129580000	92191000	10349	1222;1788	9648	20247	49242;49243;49244;49245;49246;49247	49242		6	9606
MTIAQSLEHSWIK	1	0	Oxidation (M)	1558.7814	0.78136338	173	O43293	DAPK3	Death-associated protein kinase 3	yes	yes	0	1	0	13	0													1				17.831	17.831	3	0.026158	12616	DP690-13	83.53	83.53			0.58129	0.65817	NaN	1	0	Median	7316100	4094500	3221500	10350	173	9649	20248	49248	49248	192	0	9606
MTILQTYFR	0	1	Oxidation (M)	1187.6009	0.60087982	247	O75348	ATP6V1G1	V-type proton ATPase subunit G 1	yes	yes	0	1	0	16	0																3	18.728	18.728	2	2.058E-10	13151	DP690-16	185.55	109.45			NaN	NaN	NaN	0	0	Median	6262500	6262500	0	10351	247	9650	20249;20250;20251	49249;49250;49251;49252	49250	235	4	9606
MTITEQKYEGEYR	1	1	Unmodified	1646.761	0.76102187	606	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	1	12	0												1					13.286	13.286	3	1.7108E-05	6571	DP690-12	131.69	101.49			0.95712	1.2064	NaN	1	0	Median	39958000	17555000	22403000	10352	606	9651	20252	49253;49254	49253		2	9606
MTLADDVTLDDLIMAK	1	0	2 Oxidation (M)	1795.8584	0.85835265	965	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	2	0	4	0				1													21.273	21.273	2	0.011004	16199	DP690-4	93.011	70.537			NaN	NaN	NaN	0	0	Median	1205000	0	1205000	10353	965	9652	20253	49255;49256	49256	1482;1483	2	9606
MTLDDFR	0	1	Unmodified	896.4062	0.40620276	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	9	0									1								16.864	16.864	2	0.076204	10874	DP690-9	97.068	39.615		+	NaN	NaN	NaN	0	0	Median	22684000	22684000	0	10354	667	9653	20254	49257	49257		1	9606
MTLVASEDYGDTLAAIQGLLK	1	0	Oxidation (M)	2224.1297	0.12970013	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										1							23.995	23.995	2	0.00014864	21889	DP690-10	119.87	102.17			0.69126	0.83785	NaN	1	0	Median	6921700	4292300	2629400	10355	1236	9654	20255	49258;49259	49258	1891	2	9606
MTNTGLPGPATPAYSYAK	1	0	Unmodified	1838.8873	0.88728501	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	11	0											1						16.083	16.083	2	0.0030663	11026	DP690-11	80.371	80.371			0.47902	0.58421	NaN	1	0	Median	29391000	18923000	10469000	10356	2302	9655	20256	49260;49261;49262;49263	49262		4	9606
MTNTGLPGPATPAYSYAK	1	0	Oxidation (M)	1854.8822	0.88219964	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	1	0	11	0											2						15.554	15.554	2	0.015337	10240	DP690-11	92.935	57.27			NaN	NaN	NaN	0	0	Median	20154000	20154000	0	10357	2302	9655	20257;20258	49264;49265	49264	2754	2	9606
MTQIMFEAFNTPAMYVAIQAVLSLYASGR	0	1	2 Oxidation (M)	3254.5814	0.58141329	1408	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	2	0	14	0														1			29.754	29.754	3	0.0519	26058	DP690-14	56.854	27.7			NaN	NaN	NaN	0	0	Median	0	0	0	10358	1408	9656	20259	49266	49266		1	9606
MTQIMFETFNTPAMYVAIQAVLSLYASGR	0	1	Unmodified	3252.6021	0.60214873	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	14.3	0.471														2	1		29.843	29.843	3	3.4998E-05	21734	DP690-15	94.927	73.578			1.0631	1.2252	NaN	1	0	Median	479920	262900	217020	10359	926;1023	9657	20260;20261;20262	49267;49268;49269;49270	49270		4	9606
MTTETASEDDNFGTAQSNK	1	0	Oxidation (M)	2061.8433	0.84330753	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	1	0	4.5	3.55		4							1	1							12.348	12.348	2	6.9514E-98	5665	DP690-10	397.23	391.95			0.82139	1.0123	5.0472	2	0	Median	54138000	28028000	26110000	10360	1782	9658	20263;20264;20265;20266;20267;20268	49271;49272;49273;49274;49275;49276;49277;49278;49279;49280;49281;49282	49273	2346	12	9606
MTTETASEDDNFGTAQSNK	1	0	Unmodified	2045.8484	0.8483929	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							13.292	13.292	2	2.6578E-33	6999	DP690-10	270.45	270.45			0.91532	1.1251	NaN	1	0	Median	42460000	20363000	22097000	10361	1782	9658	20269	49283;49284;49285;49286	49284		4	9606
MTVEEQMER	0	1	Oxidation (M)	1167.49	0.49000874	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	1	0	10	0										1							10.624	10.624	2	0.040872	3155	DP690-10	75.378	64.505			0.8083	1.0124	NaN	1	0	Median	46938000	25831000	21107000	10362	2155	9659	20270	49287	49287	2642	1	9606
MVAAATNNLCEAANAAVQGHASQEK	1	0	Oxidation (M)	2571.1806	0.18058328	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	1	0	2	0		1															15.318	15.318	3	0.00022359	8139	DP690-2	100.14	86.95			1.1318	1.116	NaN	1	0	Median	2588100	1337800	1250300	10363	2482	9660	20271	49288	49288	2921	1	9606
MVADLVENSYSISVPIFK	1	0	Oxidation (M)	2027.0285	0.028529521	1071	Q00341	HDLBP	Vigilin	yes	yes	0	1	0	10	0										1							21.648	21.648	2	8.3892E-11	19020	DP690-10	166.48	134.41			0.67964	0.82899	NaN	1	0	Median	23484000	14505000	8978900	10364	1071	9661	20272	49289;49290;49291;49292	49290	1673	4	9606
MVAYLQDSALDDER	0	1	Unmodified	1624.7403	0.74028642	1512	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	10	0										1							17.355	17.355	2	0.0022689	12875	DP690-10	131.43	101.67			NaN	NaN	NaN	0	0	Median	16245000	16245000	0	10365	1512	9662	20273	49293	49293		1	9606
MVDENCVGFDHTVKPVSDMELETPTDKR	2	1	2 Oxidation (M)	3280.4686	0.46862796	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	2	2	2	0		1															14.375	14.375	4	2.3606E-05	6976	DP690-2	75.896	67.996			0.89041	0.91552	NaN	1	0	Median	5098800	1933800	3165000	10366	602	9663	20274	49294;49295	49294	816;817	2	9606
MVDVVEKEDVNEAIR	1	1	Unmodified	1744.8665	0.86654957	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	1	11	0											1						14.895	14.895	3	1.4838E-06	9234	DP690-11	177.38	124.41			0.83043	0.95209	NaN	1	0	Median	132280000	66898000	65378000	10367	653	9664	20275	49296;49297	49296		2	9606
MVDVVEKEDVNEAIR	1	1	Oxidation (M)	1760.8615	0.86146419	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	1	1	3	0			2														13.981	13.981	3	0.0076094	7334	DP690-3	111.83	73.531			NaN	NaN	NaN	0	0	Median	0	0	0	10368	653	9664	20276;20277	49298;49299	49299	919	2	9606
MVEGYQGLR	0	1	Oxidation (M)	1067.507	0.50697943	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9.4	0.49									3	2							12.794	12.794	2	0.018839	5490	DP690-9	100.45	59.024			NaN	NaN	NaN	0	0	Median	42568000	0	42568000	10369	1319	9665	20278;20279;20280;20281;20282	49300;49301;49302;49303;49304;49305	49302	2030	6	9606
MVEGYQGLR	0	1	Unmodified	1051.5121	0.51206481	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								13.767	13.767	2	0.00070952	6892	DP690-9	139.28	103.92			0.82294	0.96086	NaN	1	0	Median	58127000	32485000	25642000	10370	1319	9665	20283	49306;49307;49308;49309;49310;49311	49311		6	9606
MVEMFLEYQNQISR	0	1	2 Oxidation (M)	1818.8281	0.82805557	2163	Q9HBM1	SPC25	Kinetochore protein Spc25	yes	yes	0	2	0	15	0															1		17.507	17.507	2	4.7472E-05	12113	DP690-15	145.09	121.41			0.95759	1.1086	NaN	1	0	Median	5970900	2990800	2980100	10371	2163	9666	20284	49312;49313;49314;49315;49316;49317	49317	2651;2652	6	9606
MVFINNIALAQIK	1	0	Oxidation (M)	1489.8327	0.83267067	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	1	0	10	0										1							19.257	19.257	2	0.033089	15701	DP690-10	87.913	45.703			NaN	NaN	NaN	0	0	Median	26685000	26685000	0	10372	732	9667	20285	49318	49318	1077	1	9606
MVGGEAAAAVEELVSGVR	0	1	Acetyl (Protein N-term);Oxidation (M)	1801.888	0.88801329	1871	Q96HQ2	CDKN2AIPNL	CDKN2AIP N-terminal-like protein	yes	yes	1	1	0	16	0																3	26.375	26.375	2	5.2271E-07	20364	DP690-16	140.1	119.64			0.71523	0.7946	19.36	2	0	Median	739430	437240	302200	10373	1871	9668	20286;20287;20288	49319;49320;49321	49319	2427	3	9606
MVIPGGIDVHTR	0	1	Unmodified	1293.6863	0.68634078	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	6.67	3.77				2								1					15.574	15.574	3	0.00040499	9275	DP690-4	103.43	77.519			0.82645	0.96926	6.8064	2	0	Median	56380000	29466000	26914000	10374	1359	9669	20289;20290;20291	49322;49323;49324;49325;49326;49327;49328;49329	49324		8	9606
MVIPGGIDVHTR	0	1	Oxidation (M)	1309.6813	0.6812554	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	1	0	4	0				1													13.937	13.937	3	0.00031939	7152	DP690-4	107.85	107.85			0.77881	0.85325	NaN	1	0	Median	52127000	27665000	24462000	10375	1359	9669	20292	49330;49331;49332	49331	2105	3	9606
MVIPNQPPLTATK	1	0	Oxidation (M)	1424.7697	0.76973606	1806	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	1	0	4	0				1													14.675	14.675	2	0.061501	8127	DP690-4	83.862	31.607			NaN	NaN	NaN	0	0	Median	0	0	0	10376	1806	9670	20293	49333	49333		1	9606
MVLAAAGGVEHQQLLDLAQK	1	0	Oxidation (M)	2107.1096	0.10957381	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	1	0	13	1.56									1				5	2	1		18.25	18.25	2;3	2.5549E-17	11371	DP690-13	203.27	203.27			0.82781	0.78683	10.172	4	0	Linear	6119499999.999999	3328799999.9999995	2790700000	10377	637	9671	20294;20295;20296;20297;20298;20299;20300;20301;20302	49334;49335;49336;49337;49338;49339;49340;49341;49342;49343;49344;49345;49346;49347;49348;49349;49350;49351;49352;49353	49336	884	20	9606
MVLAAAGGVEHQQLLDLAQK	1	0	Unmodified	2091.1147	0.11465919	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	11.2	3.18					1				1				3	1			18.862	18.862	2;3	7.656099999999999E-32	12592	DP690-13	253.79	221.36			0.77428	0.8635	15.188	6	0	Median	2632400000	1413900000	1218500000	10378	637	9671	20303;20304;20305;20306;20307;20308	49354;49355;49356;49357;49358;49359;49360;49361;49362;49363;49364;49365;49366;49367;49368;49369;49370;49371	49362		18	9606
MVLESVAR	0	1	Oxidation (M)	919.4797	0.47970205	1659	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	0	1	0	16	0																1	11.9	11.9	2	0.050338	4568	DP690-16	91.9	39.217			NaN	NaN	NaN	0	0	Median	17946000	17946000	0	10379	1659	9672	20309	49372	49372		1	9606
MVLLESEQFLTELTR	0	1	Oxidation (M)	1823.9339	0.93390085	687	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	1	0	12	4								1								1	22.469	22.469	2	1.2809E-14	17372	DP690-16	226.33	226.33			0.84898	0.99316	11.39	2	0	Median	10193000	5785200	4407500	10380	687	9673	20310;20311	49373;49374;49375;49376;49377;49378;49379;49380;49381;49382	49376	992	10	9606
MVLVDLPGVINTVTSGMAPDTK	1	0	2 Oxidation (M)	2289.1596	0.15962005	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	2	0	3	0			1														21.773	21.773	2	2.955E-06	17295	DP690-3	137.19	114.84			0.45028	0.47631	NaN	1	0	Median	9547200	6182000	3365200	10381	203	9674	20312	49383;49384;49385	49385	210;211	3	9606
MVLVGDVKDR	1	1	Oxidation (M)	1146.6067	0.60669348	929	P60891;P11908	PRPS1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2	yes	no	0	1	1	6	0						1											11.361	11.361	2	0.027872	3884	DP690-6	112.84	38.715			NaN	NaN	NaN	0	0	Median	823970	0	823970	10382	929	9675	20313	49386	49386	1440	1	9606
MVMPSWFDLMGLSPDAPEDEAGIKK	2	0	3 Oxidation (M)	2811.2805	0.28053982	319	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	3	1	7	0							1										19.951	19.951	3	5.3787E-16	14520	DP690-7	165.9	152.83			0.71294	0.76225	NaN	1	0	Median	23736000	13104000	10632000	10383	319	9676	20314	49387;49388	49388	329;330;331	2	9606
MVMPSWFDLMGLSPDAPEDEAGIKK	2	0	2 Oxidation (M)	2795.2856	0.2856252	319	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	2	1	7	0							4										20.991	20.991	3	0.0023171	15243	DP690-7	80.314	49.389			0.75751	0.8099	NaN	1	0	Median	8900200	6990400	1909800	10384	319	9676	20315;20316;20317;20318	49389;49390;49391;49392;49393	49390	329;330;331	5	9606
MVNHFIAEFK	1	0	Oxidation (M)	1250.6118	0.61177885	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	8	4				2								2					14.658	14.658	2;3	0.00011231	8039	DP690-4	166.34	121.59			2.065	2.1142	36.975	3	0	Plateau	668520000	241760000	426760000	10385	463	9677	20319;20320;20321;20322	49394;49395;49396;49397;49398;49399;49400;49401;49402;49403;49404;49405	49401	545	12	9606
MVNHFIAEFK	1	0	Unmodified	1234.6169	0.61686423	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	6.67	3.77				2								1					15.512	15.512	2;3	9.0729E-05	9216	DP690-4	153.97	109.22			2.0167	2.1762	42.302	3	0	Median	203810000	80066000	123740000	10386	463	9677	20323;20324;20325	49406;49407;49408;49409;49410;49411;49412;49413;49414;49415;49416	49412		11	9606
MVNHFIAEFKR	1	1	Oxidation (M)	1406.7129	0.71288988	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	4	0				1													13.3	13.3	3	0.0073731	6281	DP690-4	91.469	60.74			NaN	NaN	NaN	0	0	Median	0	0	0	10387	463	9678	20326	49417	49417	545	1	9606
MVNPTTVLESPHSLPAK	1	0	Oxidation (M)	1835.9451	0.94513424	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	1	0	2	0		1															15.33	15.33	3	0.00040515	8096	DP690-2	92.38	74.662			0.85101	0.85472	NaN	1	0	Median	6523700	3463700	3060000	10388	1555	9679	20327	49418;49419;49420;49421	49418	2231	4	9606
MVNPTVFFDIAVDGEPLGR	0	1	Acetyl (Protein N-term);Oxidation (M)	2134.0405	0.040491191	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	1	1	0	8	0								1									27.007	27.007	2	0.023699	19790	DP690-8	80.3	53.759			NaN	NaN	NaN	0	0	Median	91089	91089	0	10389	1008	9680	20328	49422	49422	1533	1	9606
MVPAGMGAGLER	0	1	2 Oxidation (M)	1219.5689	0.56892776	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	11	0											1						11.4	11.4	2	0.036536	4113	DP690-11	69.346	36.505			0.72572	0.86633	NaN	1	0	Median	45745000	23385000	22360000	10390	849	9681	20329	49423	49423	1289;1290	1	9606
MVPAGMGAGLER	0	1	Oxidation (M)	1203.574	0.57401314	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	11	0											1						14.026	14.026	2	0.0036483	8122	DP690-11	92.838	92.838			0.52423	0.63259	NaN	1	0	Median	90807000	58488000	32319000	10391	849	9681	20330	49424	49424	1289;1290	1	9606
MVPVSVQQSLAAYNQR	0	1	Unmodified	1789.9145	0.91450282	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			2														17.656	17.656	2	7.1336E-06	12198	DP690-3	129	129			0.90658	1.0241	NaN	1	0	Median	9546400	4502100	5044300	10392	1739	9682	20331;20332	49425;49426;49427	49425		3	9606
MVPVSVQQSLAAYNQR	0	1	Oxidation (M)	1805.9094	0.90941744	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	1	0	3	0			1														16.885	16.885	2	7.0543E-37	11131	DP690-3	244.27	177.01			NaN	NaN	NaN	0	0	Median	9835600	0	9835600	10393	1739	9682	20333	49428;49429	49429	2317	2	9606
MVQTPYGIVPDVYEK	1	0	Oxidation (M)	1753.8597	0.85967328	304	O95147	DUSP14	Dual specificity protein phosphatase 14	yes	yes	0	1	0	15	0															1		18.418	18.418	2	0.018274	13206	DP690-15	105.03	64.443			NaN	NaN	NaN	0	0	Median	0	0	0	10394	304	9683	20334	49430	49430	316	1	9606
MVQVHELGCEGISK	1	0	Unmodified	1585.7592	0.75924773	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	11	0											1						13.687	13.687	3	0.0020134	7450	DP690-11	78.932	78.932			0.84823	1.0249	NaN	1	0	Median	56074000	37571000	18503000	10395	1332	9684	20335	49431;49432	49431		2	9606
MVQVHELGCEGISK	1	0	Oxidation (M)	1601.7542	0.75416235	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	1	0	4.6	3.2			4								1						12.845	12.845	2;3	3.2343E-11	6206	DP690-11	178.32	142.61			0.72763	0.77531	NaN	1	0	Median	41720000	19388000	22332000	10396	1332	9684	20336;20337;20338;20339;20340	49433;49434;49435;49436;49437;49438;49439	49433	2082	7	9606
MVQVHELSCEGISK	1	0	Oxidation (M)	1631.7647	0.76472704	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	1	0	3	0			1														13.006	13.006	3	0.0024461	5906	DP690-3	78.985	78.985			0.84733	0.90852	NaN	1	0	Median	21232000	10988000	10244000	10397	1333	9685	20341	49440;49441	49440	2085	2	9606
MVSAEISENR	0	1	Oxidation (M)	1150.5288	0.52883709	1475	Q6IQ49	SDE2	Protein SDE2 homolog	yes	yes	0	1	0	13	0													1				11.166	11.166	2	0.033435	3555	DP690-13	74.173	50.404			0.762	0.90304	NaN	1	0	Median	4895800	2442900	2452800	10398	1475	9686	20342	49442	49442	2161	1	9606
MVSAVLNGMLDQSFR	0	1	Oxidation (M)	1682.812	0.81201158	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									2								19.356	19.356	2	0.0048477	15233	DP690-9	85.845	66.083			0.93452	1.1656	NaN	1	0	Median	24001000	9915200	14086000	10399	1046	9687	20343;20344	49443;49444	49443	1625;1626	2	9606
MVSAVLNGMLDQSFR	0	1	2 Oxidation (M)	1698.8069	0.8069262	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	9	0									2								17.644	17.644	2	5.6925E-05	11975	DP690-9	152.96	107.13			NaN	NaN	NaN	0	0	Median	54825000	28868000	25956000	10400	1046	9687	20345;20346	49445;49446;49447;49448	49446	1625;1626	4	9606
MVSDINNAWGCLEQVEK	1	0	Unmodified	1991.9081	0.90809681	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	11	0											1						19.976	19.976	2	5.3671E-05	16579	DP690-11	153.38	128.05			0.88343	1.077	NaN	1	0	Median	30979000	16905000	14074000	10401	476	9688	20347	49449	49449		1	9606
MVSDINNAWGCLEQVEK	1	0	Oxidation (M)	2007.903	0.90301143	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	1	0	11	0											1						19.443	19.443	2	0.010047	15796	DP690-11	113.35	72.255			NaN	NaN	NaN	0	0	Median	0	0	0	10402	476	9688	20348	49450	49450	584	1	9606
MVSEEMEEQVHSIR	0	1	2 Oxidation (M)	1734.7553	0.75528456	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	2	0	11	0											2						11.602	11.602	3	0.0024804	4238	DP690-11	75.02	58.276			0.85542	1.0273	2.5929	2	0	Median	130760000	68039000	62718000	10403	1950	9689	20349;20350	49451;49452;49453;49454;49455	49451	2485;2486	4	9606
MVSEEMEEQVHSIR	0	1	Oxidation (M)	1718.7604	0.76036994	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	1	0	11	0											3						12.943	12.943	3	0.0004653	8112	DP690-11	99.161	81.023			0.8428	0.98255	12.166	3	0	Plateau	324920000	160820000	164100000	10404	1950	9689	20351;20352;20353	49456;49457;49458	49456	2485;2486	1	9606
MVSEEMEEQVHSIR	0	1	Unmodified	1702.7655	0.76545532	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11	0											2						14.773	14.773	2;3	5.9372E-10	9036	DP690-11	208.08	175.65			1.0006	1.1375	NaN	1	0	Median	232460000	105890000	126570000	10405	1950	9689	20354;20355	49459;49460;49461;49462;49463	49461		5	9606
MVSIRDFTMPKK	2	1	Acetyl (Protein N-term);2 Oxidation (M)	1525.7633	0.76327047	453	P0DTE5			yes	yes	1	2	2	5	0					1												12.373	12.373	2	0.025503	4902	DP690-5	68.016	15.437			NaN	NaN	NaN	0	0	Median	0	0	0	10406	453	9690	20356	49464	49464	523;524	1	9606
MVSVLPIFR	0	1	Oxidation (M)	1076.6052	0.60523691	1673	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	1	0	3	0			1														19.629	19.629	2	0.033164	14741	DP690-3	79.469	50.298			0.72375	0.81041	NaN	1	0	Median	7303500	4322400	2981200	10407	1673	9691	20357	49465	49465	2283	1	9606
MVSVLPIFR	0	1	Unmodified	1060.6103	0.61032229	1673	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	3	0			1														20.715	20.715	2	0.011786	16084	DP690-3	87.754	87.754			0.80538	0.87897	NaN	1	0	Median	2901700	1611800	1289900	10408	1673	9691	20358	49466;49467	49467		2	9606
MVVDAVMMLDDLLQLK	1	0	3 Oxidation (M)	1880.9297	0.92974345	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	3	0	12	0												2					23.987	23.987	2	0.016084	20590	DP690-12	77.387	45.133			NaN	NaN	NaN	0	0	Median	0	0	0	10409	1959	9692	20359;20360	49468;49469	49469	2499;2500;2501	2	9606
MVVESAYEVIK	1	0	Oxidation (M)	1282.6479	0.64788959	400	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	1	0	6	0						1											15.715	15.715	2	0.0036416	8987	DP690-6	96.342	72.819			1.6372	1.873	NaN	1	0	Median	14789000	5611400	9177200	10410	400	9693	20361	49470;49471;49472;49473	49473	432	4	9606
MVVPGLDGAQIPR	0	1	Oxidation (M)	1367.7231	0.72312022	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	2.33	0.471		2	1														17.336	17.336	2	0.00016446	9807	DP690-2	137.46	95.269			0.74628	0.77468	80.923	3	0	Median	122280000	72667000	49612000	10411	789	9694	20362;20363;20364	49474;49475;49476;49477;49478;49479;49480;49481;49482;49483;49484;49485;49486	49476	1185	13	9606
MVVPGLDGAQIPR	0	1	Unmodified	1351.7282	0.7282056	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															18.38	18.38	2	0.001483	11760	DP690-2	97.456	70.942			0.7377	0.77023	NaN	1	0	Median	14763000	8203200	6559400	10412	789	9694	20365	49487;49488	49488		2	9606
MVVPGLDGAQIPRDPSQQELPR	0	2	Oxidation (M)	2418.2325	0.23254249	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	1	2	0		1															16.825	16.825	3	0.0014246	9896	DP690-2	71.263	71.263			0.75923	0.75831	NaN	1	0	Median	5383900	3565500	1818400	10413	789	9695	20366	49489;49490;49491	49489	1185	3	9606
MVVPLACLLTPLK	1	0	Oxidation (M)	1469.835	0.83497885	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	1	0	7	4			1								1						21.994	21.994	2	0.0039164	17427	DP690-3	91.549	91.549			0.77674	0.87819	3.7286	2	0	Median	45804000	26665000	19139000	10414	1333	9696	20367;20368	49492;49493;49494;49495;49496;49497	49495	2086	6	9606
MVVPLACLLTPLK	1	0	Unmodified	1453.8401	0.84006423	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	11	0											1						23.184	23.184	2	5.7003E-05	20714	DP690-11	125.74	104.17			0.79109	0.97351	NaN	1	0	Median	19032000	11204000	7827600	10415	1333	9696	20369	49498;49499;49500;49501	49499		4	9606
MVVPVAALFTPLK	1	0	Oxidation (M)	1400.8101	0.81014431	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	1	0	7	4			1								1						21.446	21.446	2	0.00068476	18608	DP690-11	109.83	69.981			0.78031	0.88514	10.104	2	0	Median	81281000	47578000	33704000	10416	1332	9697	20370;20371	49502;49503;49504;49505;49506	49502	2083	5	9606
MVVPVAALFTPLK	1	0	Unmodified	1384.8152	0.81522969	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	7	4			1								1						22.711	22.711	2	1.7972E-05	20139	DP690-11	181.87	151.3			0.74528	0.83959	26.113	2	0	Median	69651000	37131000	32520000	10417	1332	9697	20372;20373	49507;49508;49509;49510;49511;49512	49509		6	9606
MVVSFNR	0	1	Unmodified	851.43236	0.43235793	766	P46940;Q13576	IQGAP1;IQGAP2	Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP2	yes	no	0	0	0	10	0										1							14.407	14.407	2	0.074867	8652	DP690-10	97.596	47.47			NaN	NaN	NaN	0	0	Median	30609000	30609000	0	10418	766	9698	20374	49513	49513		1	9606
MVYIYHSLK	1	0	Unmodified	1152.6002	0.60015154	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	13	0													1				13.976	13.976	2	0.0053312	7336	DP690-13	98.458	78.468			0.93778	1.0839	NaN	1	0	Median	60507000	31567000	28941000	10419	1597	9699	20375	49514;49515;49516	49514		3	9606
MWDLSSNQAIQIAQHDAPVK	1	0	Oxidation (M)	2267.1005	0.10046569	1045	P78406	RAE1	mRNA export factor	yes	yes	0	1	0	14	0														1			18.16	18.16	3	1.1428E-05	13226	DP690-14	124.73	101.36			0.91735	1.1047	NaN	1	0	Median	104420000	52869000	51546000	10420	1045	9700	20376	49517;49518	49517	1581	2	9606
MWDLSSNQAIQIAQHDAPVK	1	0	Unmodified	2251.1056	0.10555106	1045	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	14	0														1			18.736	18.736	3	4.344E-10	13885	DP690-14	150.9	150.9			0.8802	1.0528	NaN	1	0	Median	122960000	67201000	55757000	10421	1045	9700	20377	49519;49520;49521;49522	49520		4	9606
MWPGILVGGARVASCR	0	2	Acetyl (Protein N-term);Oxidation (M)	1786.8971	0.89707861	1368	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	1	1	1	14	0														1			25.709	25.709	2	0.077427	22357	DP690-14	43.897	14.129			NaN	NaN	NaN	0	0	Median	0	0	0	10422	1368	9701	20378	49523	49523		1	9606
MYAALGDPK	1	0	Oxidation (M)	980.46372	0.46371763	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									1								12.144	12.144	2	0.0066668	4711	DP690-9	103.74	62.237			0.76489	0.86886	NaN	1	0	Median	88903000	51012000	37891000	10423	1046	9702	20379	49524;49525;49526;49527	49525	1627	4	9606
MYAALGDPK	1	0	Unmodified	964.4688	0.46880301	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								13.564	13.564	2	0.0039972	6566	DP690-9	103.83	57.463			0.77814	0.94936	NaN	1	0	Median	31165000	19384000	11781000	10424	1046	9702	20380	49528;49529;49530;49531	49528		4	9606
MYGISLCQAILDETKGDYEK	2	0	Oxidation (M)	2349.0868	0.086849036	365	P04083	ANXA1	Annexin A1	yes	yes	0	1	1	6	0						1											19.617	19.617	3	0.063579	13657	DP690-6	68.168	42.962			NaN	NaN	NaN	0	0	Median	3777200	0	3777200	10425	365	9703	20381	49532;49533	49532		2	9606
MYHDDDLADLVFPSSATADTSIFAGQNDPLK	1	0	Oxidation (M)	3369.5347	0.53471691	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	0	10	0										1							22.603	22.603	3	5.6101E-07	20092	DP690-10	111.93	111.93			0.4119	0.50312	NaN	1	0	Median	25747000	19832000	5914900	10426	604	9704	20382	49534;49535;49536;49537;49538;49539	49534	839	6	9606
MYITCAEYTHFYGGK	1	0	Oxidation (M)	1855.7909	0.79094179	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	1	0	12	0												1					15.786	15.786	3	0.00062809	10154	DP690-12	91.845	82.932			0.96404	1.1371	NaN	1	0	Median	84759000	47442000	37317000	10427	1200	9705	20383	49540;49541;49542;49543	49542	1852	4	9606
MYLQAAIVR	0	1	Oxidation (M)	1079.5798	0.57975044	1228	Q13617	CUL2	Cullin-2	yes	yes	0	1	0	3	0			1														14.911	14.911	2	0.003819	8510	DP690-3	111.65	72.686			22.665	25.947	NaN	1	0	Median	23272000	1342600	21929000	10428	1228	9706	20384	49544;49545	49545	1882	2	9606
MYSIEPADR	0	1	Oxidation (M)	1096.4859	0.48590964	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	1	0	3	0			1														13.056	13.056	2	0.0059142	6000	DP690-3	105.57	86.837			0.596	0.67921	NaN	1	0	Median	25361000	15642000	9719100	10429	5	9707	20385	49546;49547	49547	9	2	9606
MYVFGGWVPLVMDDVK	1	0	Oxidation (M)	1870.8998	0.89976395	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	1	0	11	0											1						23.743	23.743	2	0.053969	21397	DP690-11	86.911	58.105			NaN	NaN	NaN	0	0	Median	0	0	0	10430	837	9708	20386	49548	49548		1	9606
MYVGECQGPGVR	0	1	Oxidation (M)	1367.5962	0.59620515	1315	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	1	0	3	0			2														12.038	12.038	2	0.016032	4706	DP690-3	99.653	58.771			NaN	NaN	NaN	0	0	Median	0	0	0	10431	1315	9709	20387;20388	49549;49550	49549	2005	2	9606
NAAENMLEILGFK	1	0	Unmodified	1448.7334	0.73335055	340	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	12	0												1					24.113	24.113	2	0.0052266	20665	DP690-12	85.288	40.989			0.99413	1.2022	NaN	1	0	Median	2449500	1219100	1230400	10432	340	9710	20389	49551;49552;49553;49554	49552		4	9606
NAAFGQSGGAGSDSNSPGNVQPNSAPSVESHPVLEK	1	0	Unmodified	3492.6142	0.61418129	2053	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	0	0	10.8	3.96				1								1	1	1			14.64	14.64	3	7.6511E-35	8520	DP690-12	180.58	180.58			0.59791	0.66706	19.687	4	0	Median	413850000	240020000	173830000	10433	2053	9711	20390;20391;20392;20393	49555;49556;49557;49558;49559;49560;49561;49562;49563;49564;49565;49566;49567;49568;49569;49570;49571;49572	49556		18	9606
NAAHGPDSFASAAR	0	1	Unmodified	1370.6327	0.63272531	2498	Q9Y5B8	NME7	Nucleoside diphosphate kinase 7	yes	yes	0	0	0	8	3.46						3								1			10.854	10.854	2;3	1.6756E-05	3278	DP690-6	116.63	98.367			0.90477	1.029	22.844	2	0	Median	24496000	15557000	8938900	10434	2498	9712	20394;20395;20396;20397	49573;49574;49575;49576;49577;49578;49579;49580	49575		8	9606
NAAIAVLEELKK	2	0	Unmodified	1297.7606	0.76055158	340	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	1	12	0												1					17.675	17.675	2	0.049399	12732	DP690-12	70.412	48.948			1.0574	1.2358	NaN	1	0	Median	26171000	12888000	13282000	10435	340	9713	20398	49581	49581		1	9606
NAALNTIVTVYNVHGDQVFK	1	0	Unmodified	2202.1433	0.14331678	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										2							19.138	19.138	2;3	0.00041681	15400	DP690-10	87.554	69.496			0.6935	0.85658	NaN	1	0	Median	140990000	75900000	65091000	10436	1240	9714	20399;20400	49582;49583	49582		2	9606
NAAPPPSNTEAPPGETR	0	1	Unmodified	1704.8067	0.80672651	2073	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	11	0											1						10.805	10.805	2	0.0011787	3349	DP690-11	128.21	100.35			NaN	NaN	NaN	0	0	Median	4304400	4304400	0	10437	2073	9715	20401	49584;49585	49584		2	9606
NACDHLSGFNVCNR	0	1	Unmodified	1662.6991	0.69910709	2462	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	16	0																2	13.886	13.886	2;3	1.1947E-06	7077	DP690-16	190.37	163.04			0.81431	0.89719	NaN	1	0	Median	101810000	52159000	49653000	10438	2462	9716	20402;20403	49586;49587;49588;49589;49590;49591	49589		6	9606
NADLCIASGTK	1	0	Unmodified	1148.5496	0.54957253	1125	Q06330	RBPJ	Recombining binding protein suppressor of hairless	yes	yes	0	0	0	12	0												1					12.847	12.847	2	1.5363E-05	5976	DP690-12	158.47	106.07			NaN	NaN	NaN	0	0	Median	50857000	50857000	0	10439	1125	9717	20404	49592;49593	49592		2	9606
NADMQEELIASLEEQLK	1	0	Oxidation (M)	1975.9408	0.94083673	1541	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	1	0	10	0										2							22.207	22.207	2	0.00043259	19661	DP690-10	150.9	93.968			NaN	NaN	NaN	0	0	Median	0	0	0	10440	1541	9718	20405;20406	49594;49595	49594	2219	2	9606
NADMSEDMQQDAVDCATQAMEK	1	0	3 Oxidation (M)	2534.9506	0.95056784	1852	Q96FJ2	DYNLL2	Dynein light chain 2, cytoplasmic	yes	yes	0	3	0	16	0																2	13.37	13.37	2;3	8.3029E-44	6291	DP690-16	268.13	266.34			0.84732	0.97582	3.9645	2	0	Median	60151000	30514000	29636000	10441	1852	9719	20407;20408	49596;49597;49598;49599;49600;49601;49602;49603;49604	49596	2417;2418;2419	9	9606
NADMSEDMQQDAVDCATQAMEK	1	0	2 Oxidation (M)	2518.9557	0.95565322	1852	Q96FJ2	DYNLL2	Dynein light chain 2, cytoplasmic	yes	yes	0	2	0	16	0																2	15.291	15.291	2	0.018532	10312	DP690-16	121.03	113.69			NaN	NaN	NaN	0	0	Median	0	0	0	10442	1852	9719	20409;20410	49605;49606	49606	2417;2418;2419	2	9606
NADMSEEMQQDSVECATQALEK	1	0	2 Oxidation (M)	2545.0254	0.025447346	1016	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	yes	yes	0	2	0	14	3.46								1								3	16.428	16.428	2;3	3.86E-96	9958	DP690-16	368.4	359.86			0.86126	0.96962	11.468	4	0	Median	106150000	55681000	50469000	10443	1016	9720	20411;20412;20413;20414	49607;49608;49609;49610;49611;49612;49613;49614;49615;49616;49617;49618;49619;49620;49621;49622;49623;49624	49611	1540;1541	18	9606
NADMSEEMQQDSVECATQALEK	1	0	Oxidation (M)	2529.0305	0.030532724	1016	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	yes	yes	0	1	0	16	0																2	17.235	17.235	2	9.6648E-17	11374	DP690-16	188	159.91			NaN	NaN	NaN	0	0	Median	3229100	3229100	0	10444	1016	9720	20415;20416	49625;49626;49627	49625	1540;1541	3	9606
NADPETTLLAYLR	0	1	Unmodified	1475.762	0.76200815	772	P47989	XDH	Xanthine dehydrogenase/oxidase;Xanthine dehydrogenase;Xanthine oxidase	yes	yes	0	0	0	1	0	1																22.206	22.206	2	0.00023815	13965	DP690-1	148.91	99.854			NaN	NaN	NaN	0	0	Median	2531200	2531200	0	10445	772	9721	20417	49628;49629	49629		2	9606
NADPILISLK	1	0	Unmodified	1082.6336	0.63356015	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	12.7	2.05										1			1		1		18.058	18.058	2	0.00077498	12818	DP690-13	110.76	86.237			0.63439	0.74792	16.141	3	0	Median	684020000	368540000	315480000	10446	2395	9722	20418;20419;20420	49630;49631;49632;49633;49634;49635;49636;49637;49638	49632		9	9606
NAEEFTLR	0	1	Unmodified	978.47706	0.47705951	120	O14933	UBE2L6	Ubiquitin/ISG15-conjugating enzyme E2 L6	yes	yes	0	0	0	8	0								1									14.59	14.59	2	0.021067	7631	DP690-8	170.66	107.36			0.70794	0.73475	NaN	1	0	Median	89355000	51662000	37694000	10447	120	9723	20421	49639	49639		0	9606
NAEFDRHEIQIYEEVAK	1	1	Unmodified	2090.0069	0.006882877	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	1	12	0												1					16.565	16.565	3	2.1229E-06	11196	DP690-12	130.02	130.02			0.71003	0.82468	NaN	1	0	Median	112240000	57656000	54587000	10448	2280	9724	20422	49640;49641	49641		2	9606
NAEFLTCNIPTSNASNNMVTTEK	1	0	Unmodified	2555.1632	0.16320188	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											2						17.641	17.641	2	3.0282E-09	13264	DP690-11	174.59	135.61			1.0903	1.3194	NaN	1	0	Median	44534000	24356000	20178000	10449	897	9725	20423;20424	49642;49643	49643		2	9606
NAEFLTCNIPTSNASNNMVTTEK	1	0	Oxidation (M)	2571.1581	0.1581165	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	11	0											1						16.686	16.686	2	3.1379999999999997E-43	11876	DP690-11	237.06	200.43			NaN	NaN	NaN	0	0	Median	15604000	15604000	0	10450	897	9725	20425	49644;49645	49644	1392	2	9606
NAEPLINLDVNNPDFK	1	0	Unmodified	1811.9054	0.90537792	2426	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	12.3	3.77							1								2		19.495	19.495	2	2.4363E-07	14480	DP690-15	170.18	129.68			0.72893	0.85582	22.227	3	0	Median	50506000	28680000	21826000	10451	2426	9726	20426;20427;20428	49646;49647;49648;49649;49650;49651;49652	49649		7	9606
NAEQAATQLK	1	0	Unmodified	1072.5513	0.55128709	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	10	0										3							11.115	11.115	2	0.016451	3907	DP690-10	106.42	55.088			NaN	NaN	NaN	0	0	Median	42028000	42028000	0	10452	1570	9727	20429;20430;20431	49653;49654;49655;49656	49656		4	9606
NAFASVILFGTNNSSSISGVWVFR	0	1	Unmodified	2572.3074	0.30742199	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	13	0													1				24.616	24.616	2	1.039E-37	20881	DP690-13	227.67	190.68			1.0944	1.28	NaN	1	0	Median	2956700	1237100	1719600	10453	598	9728	20432	49657;49658;49659;49660;49661;49662;49663	49658		7	9606
NAFMMLIHADQDR	0	1	2 Oxidation (M)	1592.7075	0.70754651	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	2	0	3	0			1														15.919	15.919	3	0.066245	9906	DP690-3	40.025	25.678			2.7095	3.0827	NaN	1	0	Median	11908000	2569600	9338200	10454	877	9729	20433	49664;49665	49664		2	9606
NAFVTGIAR	0	1	Unmodified	947.51886	0.51886475	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	11	0											1						14.556	14.556	2	0.021124	8788	DP690-11	78.334	50.126			1.0815	1.3021	NaN	1	0	Median	77536000	42202000	35334000	10455	1531;1849	9730	20434	49666;49667	49667		2	9606
NAGDLAPAGGAASASTDEAADAESGTR	0	1	Unmodified	2432.0688	0.068767445	2258	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	12	0												2					14.43	14.43	2	2.3594E-47	8229	DP690-12	245.1	245.1			0.88009	1.0561	NaN	1	0	Median	20711000	12667000	8044100	10456	2258	9731	20435;20436	49668;49669;49670	49669		3	9606
NAGNCLSPAVIVGLLK	1	0	Unmodified	1624.8971	0.89706184	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	9.67	4.03				1								1	1				22.087	22.087	2	3.3313E-07	16888	DP690-4	196.67	196.67			1.1932	1.3007	20.347	3	0	Plateau	20572000	10633000	9938700	10457	167	9732	20437;20438;20439	49671;49672;49673;49674;49675;49676;49677;49678;49679	49679		9	9606
NAGPIANYLQQVMQEAR	0	1	Unmodified	1901.9418	0.9417802	1140	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	11	0											1						22.715	22.715	2	0.01036	20156	DP690-11	117.7	67.482			NaN	NaN	NaN	0	0	Median	0	0	0	10458	1140	9733	20440	49680	49680		1	9606
NAGQAVTIVAQYRPEEYSR	0	2	Unmodified	2151.0709	0.070880117	1173	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	1	11	0											1						16.185	16.185	3	0.00084066	11103	DP690-11	80.738	59.424			0.88955	1.0966	NaN	1	0	Median	98691000	43240000	55451000	10459	1173	9734	20441	49681	49681		1	9606
NAGVEGSLIVEK	1	0	Unmodified	1214.6507	0.65066678	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	4	0				1													14.715	14.715	2	0.00017382	8109	DP690-4	145.46	106.68			1.2688	1.3544	NaN	1	0	Median	52691000	23310000	29381000	10460	461	9735	20442	49682;49683;49684;49685	49683		4	9606
NAGYGGLGLSIEGPSK	1	0	Unmodified	1518.7678	0.7678218	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7.5	3.2		1							2	1							17.56	17.56	2	0.00052804	13225	DP690-10	128.54	128.54			1.0376	1.154	8.0298	2	0	Median	93821000	46440000	47381000	10461	1270	9736	20443;20444;20445;20446	49686;49687;49688;49689;49690	49687		5	9606
NAHSATTWSGQYVGGAEAR	0	1	Unmodified	1961.898	0.89800113	58	CON__Streptavidin			yes	yes	0	0	0	6.84	4.45	2	2	1	1	2	3	1	1	2		1			1	1	1	13.313	13.313	2;3	6.6425E-116	6027	DP690-5	317.91	281.38		+	NaN	NaN	NaN	0	0	Median	360940000	360940000	0	10462	58	9737	20447;20448;20449;20450;20451;20452;20453;20454;20455;20456;20457;20458;20459;20460;20461;20462;20463;20464;20465	49691;49692;49693;49694;49695;49696;49697;49698;49699;49700;49701;49702;49703;49704;49705;49706;49707;49708;49709;49710;49711;49712;49713;49714;49715;49716;49717;49718;49719;49720;49721;49722;49723;49724;49725	49712		35	
NAIANASTLAEVER	0	1	Unmodified	1457.7474	0.74742071	438	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	11	4							1								1		16.094	16.094	2	2.6593E-14	9678	DP690-7	278.51	175.25			0.8608	0.92067	9.7482	2	0	Median	341270000	178820000	162450000	10463	438	9738	20466;20467	49726;49727;49728;49729;49730;49731	49730		6	9606
NAIFQLEK	1	0	Unmodified	961.52328	0.52328142	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														16.229	16.229	2	0.058712	10205	DP690-3	93.429	39.224			NaN	NaN	NaN	0	0	Median	27624000	0	27624000	10464	5	9739	20468	49732;49733	49732		2	9606
NAIQLLASFLANNPFSCK	1	0	Unmodified	2007.0248	0.024781548	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	10	0										3							27.441	27.441	2	0.0095449	25705	DP690-10	101.45	68.828			NaN	NaN	NaN	0	0	Median	359740	0	359740	10465	1311	9740	20469;20470;20471	49734;49735;49736	49734		3	9606
NALANPLYCPDYR	0	1	Unmodified	1565.7297	0.72966216	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13	0													3				17.189	17.189	2	1.0254E-08	11822	DP690-13	208.33	110.77			0.65643	0.6964	NaN	1	0	Median	944270000	441480000	502790000	10466	565	9741	20472;20473;20474	49737;49738;49739;49740	49739		4	9606
NALANQSDCVLHR	0	1	Unmodified	1496.7154	0.71540908	2363	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	12	0												1					12.61	12.61	3	0.00030565	5632	DP690-12	104.24	81.915			0.70902	0.84124	NaN	1	0	Median	49883000	29254000	20629000	10467	2363	9742	20475	49741	49741		1	9606
NALESYAFNMK	1	0	Unmodified	1286.5965	0.59652272	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	8	4				1								1					17.858	17.858	2	0.00068188	13047	DP690-12	109.44	84.584			1.2179	1.3887	35.159	2	0	Median	88539000	43946000	44593000	10468	449	9743	20476;20477	49742;49743	49742		2	9606
NALESYAFNMK	1	0	Oxidation (M)	1302.5914	0.59143734	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	4	0				1													16.047	16.047	2	0.0004787	9886	DP690-4	120.31	83.881			1.5168	1.6078	NaN	1	0	Median	72522000	28831000	43692000	10469	449	9743	20478	49744;49745;49746;49747	49745	516	4	9606
NALFPEVFSPTPDENSDQNSR	0	1	Unmodified	2363.0666	0.0665826	1604	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	11	0											1						20.285	20.285	2	5.6224E-16	16954	DP690-11	179.55	133.66			NaN	NaN	NaN	0	0	Median	11895000	11895000	0	10470	1604	9744	20479	49748;49749;49750	49748		3	9606
NALGPGLSPELGPLPALR	0	1	Unmodified	1770.9992	0.99921872	1645	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	8	4				1								1					20.692	20.692	2	4.5873E-17	16715	DP690-12	208.08	208.08			0.6378	0.75328	4.1206	2	0	Median	20285000	12916000	7368500	10471	1645	9745	20480;20481	49751;49752;49753;49754;49755;49756;49757;49758	49751		8	9606
NALLQLTDSQIADVAR	0	1	Unmodified	1726.9214	0.92136233	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	9.5	0.5									1	1							20.172	20.172	2	6.2825E-07	17036	DP690-10	149.69	112			0.82159	1.0254	4.6547	2	0	Median	54666000	29946000	24720000	10472	269	9746	20482;20483	49759;49760	49759		2	9606
NALQQENHIIDGVK	1	0	Unmodified	1577.8162	0.81616898	2075	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	yes	yes	0	0	0	16	0																2	14.197	14.197	2;3	1.2124E-08	7471	DP690-16	196.15	157.75			0.87699	1.0046	2.5648	2	0	Median	77882000	41737000	36145000	10473	2075	9747	20484;20485	49761;49762;49763;49764;49765	49763		5	9606
NALVSHLDGTTPVCEDIGR	0	1	Unmodified	2052.9899	0.9898526	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	13.6	3.1					1								3	1	2	3	16.075	16.075	2;3	4.3203E-50	9989	DP690-13	338.92	302.5			0.73863	0.82437	12.409	6	0	Median	1638399999.9999998	919480000	718870000	10474	637	9748	20486;20487;20488;20489;20490;20491;20492;20493;20494;20495	49766;49767;49768;49769;49770;49771;49772;49773;49774;49775;49776;49777;49778;49779;49780;49781;49782;49783;49784;49785;49786;49787;49788;49789;49790	49771		25	9606
NAPAIIFIDELDAIAPK	1	0	Unmodified	1809.9877	0.98765098	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	4.6	3.2			4								1						24.977	24.977	2	1.9387E-06	22843	DP690-11	139.74	117.97			0.94914	0.99304	14.509	3	0	Median	21377000	11894000	9483300	10475	893	9749	20496;20497;20498;20499;20500	49791;49792;49793;49794;49795;49796;49797;49798	49794		7	9606
NAPNDASYDAVR	0	1	Unmodified	1291.5793	0.57929275	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	6.6	3.77		2							1	2							12.121	12.121	2	0.0028988	4343	DP690-2	121.9	71.292			NaN	NaN	NaN	0	0	Median	2751600	0	2751600	10476	1782	9750	20501;20502;20503;20504;20505	49799;49800;49801;49802;49803	49801		5	9606
NAPPFLEDPSQLPPK	1	0	Unmodified	1648.8461	0.84607213	225	O60830	TIMM17B	Mitochondrial import inner membrane translocase subunit Tim17-B	yes	yes	0	0	0	16	0																1	17.699	17.699	2	0.0010687	11869	DP690-16	96.64	70.523			0.45622	0.53437	NaN	1	0	Median	9297800	6270300	3027500	10477	225	9751	20506	49804;49805;49806;49807	49805		4	9606
NAQAIEDMVGYAQETQHEK	1	0	Oxidation (M)	2176.9695	0.96951109	1935	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	1	0	3	0			1														13.92	13.92	3	0.00066745	7256	DP690-3	85.054	85.054			1.4684	1.579	NaN	1	0	Median	17135000	8158400	8976600	10478	1935	9752	20507	49808;49809;49810;49811	49808	2467	4	9606
NAQLNIELEAAHH	0	0	Unmodified	1458.7215	0.72154031	742	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	4	0				1													14.611	14.611	3	0.015705	8041	DP690-4	80.834	52.028			NaN	NaN	NaN	0	0	Median	0	0	0	10479	742	9753	20508	49812	49812		1	9606
NAQMAQSPILLLGGAASTLLQNR	0	1	Oxidation (M)	2382.2689	0.268928	6	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	1	0	12	0												1					23.836	23.836	2	0.0020417	20400	DP690-12	99.069	73.091			NaN	NaN	NaN	0	0	Median	0	0	0	10480	6	9754	20509	49813	49813	10	1	9606
NASEDNHSENTLYSNDNGSNLQR	0	1	Unmodified	2578.0916	0.091628152	1690	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	0	13	0													1				12.539	12.539	3	0.00097365	5326	DP690-13	94.271	76.37			NaN	NaN	NaN	0	0	Median	0	0	0	10481	1690	9755	20510	49814	49814		1	9606
NASEMIDKLTLTFNR	1	1	Unmodified	1751.8876	0.88761936	678	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	1	14	0														1			19.59	19.59	3	0.018517	15097	DP690-14	64.842	21.081			0.6915	0.87039	NaN	1	0	Median	30738000	17060000	13677000	10482	678	9756	20511	49815;49816	49815		2	9606
NASTFEDVTQVSSAYQK	1	0	Unmodified	1873.8694	0.86938634	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	10	3.54				1							1	1	1				16.805	16.805	2	2.4259E-34	12026	DP690-11	329.67	269.83			0.83851	0.99988	NaN	1	0	Median	57692000	34122000	23570000	10483	1267	9757	20512;20513;20514;20515	49817;49818;49819;49820;49821;49822;49823	49817		7	9606
NAVDEFLLLLDK	1	0	Unmodified	1388.7551	0.75513185	2330	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	3	0			1														24.896	24.896	2	0.0078481	20592	DP690-3	78.342	64.107			0.80432	0.83672	NaN	1	0	Median	1901600	971540	930030	10484	2330	9758	20516	49824	49824		1	9606
NAVEEYVYEFR	0	1	Unmodified	1417.6514	0.65139506	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														19.286	19.286	2	1.9535E-06	14201	DP690-3	219.72	192.23			1.014	1.126	NaN	1	0	Median	41429000	20243000	21186000	10485	1778	9759	20517	49825;49826;49827;49828;49829;49830	49826		6	9606
NAVITVPAYFNDSQR	0	1	Unmodified	1693.8424	0.84238373	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	9	3.56				1							1	1					18.422	18.422	2	1.3309E-25	12771	DP690-4	219.92	166.35			0.76308	0.91361	1.5386	2	0	Median	175190000	85316000	89878000	10486	695	9760	20518;20519;20520	49831;49832;49833;49834;49835;49836;49837;49838	49837		8	9606
NAVLAIYTIYR	0	1	Unmodified	1295.7238	0.72377215	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	3	0			1														19.623	19.623	2	0.00044289	14596	DP690-3	145.89	89.339			NaN	NaN	NaN	0	0	Median	11229000	0	11229000	10487	877	9761	20521	49839;49840	49839		2	9606
NAVPITPTLNR	0	1	Unmodified	1194.6721	0.67207093	33	CON__P02663			yes	yes	0	0	0	4.67	2.21	1	1	1	1	1	2	1	1									14.743	14.743	2	0.0022023	7873	DP690-8	134.05	86.309		+	NaN	NaN	NaN	0	0	Median	2535800000	2535800000	0	10488	33	9762	20522;20523;20524;20525;20526;20527;20528;20529;20530	49841;49842;49843;49844;49845;49846;49847;49848;49849;49850;49851;49852;49853;49854;49855;49856;49857	49856		17	
NAVTQFVSSMSASADVLALAK	1	0	Oxidation (M)	2125.0725	0.072519601	444	P47985;P0C7P4	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	yes	no	0	1	0	15	0															1		21.366	21.366	2	1.5069E-05	16699	DP690-15	124.16	86.55			NaN	NaN	NaN	0	0	Median	561720	561720	0	10489	444	9763	20531	49858;49859	49858	509	2	9606
NAYAVLYDIILK	1	0	Unmodified	1394.781	0.78095267	1124	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	7	0							1										23.31	23.31	2	0.00020668	18426	DP690-7	121.61	101.58			0.72413	0.78094	NaN	1	0	Median	38084000	21974000	16110000	10490	1124	9764	20532	49860;49861;49862;49863;49864;49865	49863		6	9606
NCASPSSAGQLILPECMK	1	0	Unmodified	1961.9009	0.90090294	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	11	0											2						17.76	17.76	2	0.0002161	13461	DP690-11	127.71	118.52			0.85637	1.0421	NaN	1	0	Median	36880000	19544000	17337000	10491	883	9765	20533;20534	49866;49867;49868	49867		3	9606
NCDYQQEADNSCIYVNK	1	0	Unmodified	2119.8575	0.8575178	684	P36954	POLR2I	DNA-directed RNA polymerase II subunit RPB9	yes	yes	0	0	0	16	0																2	14.675	14.675	2	1.3573E-17	8141	DP690-16	214.61	193.87			0.81699	0.95691	NaN	1	0	Median	9167700	5254800	3912900	10492	684	9766	20535;20536	49869;49870;49871;49872;49873;49874	49872		6	9606
NCEPMIGLVPILK	1	0	Oxidation (M)	1498.7888	0.78875694	2445	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	1	0	15	0															1		19.676	19.676	2	0.0092617	14819	DP690-15	82.749	61.75			0.62805	0.73236	NaN	1	0	Median	6299200	3738200	2561000	10493	2445	9767	20537	49875	49875	2896	1	9606
NCEPMIGLVPILK	1	0	Unmodified	1482.7938	0.79384232	2445	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	3	0			1														25.858	25.858	2	0.067688	21287	DP690-3	56.432	38.996			0.85242	0.89747	NaN	1	0	Median	7704300	4182700	3521600	10494	2445	9767	20538	49876	49876		1	9606
NCETDTLINYMAK	1	0	Oxidation (M)	1587.6909	0.69089339	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	1	0	7	4			1								1						15.589	15.589	2	0.00018881	10249	DP690-11	139.43	116.29			1.1192	1.275	12.201	2	0	Median	49864000	25201000	24663000	10495	883	9768	20539;20540	49877;49878;49879;49880	49877	1341	4	9606
NCGCLGASPNLEQLQEENLK	1	0	Unmodified	2273.0416	0.041630178	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	8	4				1								1					17.649	17.649	2	9.139699999999999E-38	12675	DP690-12	290.17	266.34			0.84823	1.0169	NaN	1	0	Median	30075000	15296000	14779000	10496	886	9769	20541;20542	49881;49882;49883;49884;49885	49882		5	9606
NCGVSVTEAMLGVMTEADK	1	0	2 Oxidation (M)	2042.8959	0.89587714	1284	Q14678	KANK1	KN motif and ankyrin repeat domain-containing protein 1	yes	yes	0	2	0	5.67	0.943					2		1										19.094	19.094	2	0.022576	13581	DP690-7	60.161	33.629			0.050837	0.053437	NaN	1	0	Median	392730000	255130000	137600000	10497	1284	9770	20543;20544;20545	49886;49887;49888;49889	49889	1967;1968	4	9606
NCISTVVHQGLIR	0	1	Unmodified	1495.7929	0.79293112	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.33	0.471									2	1							15.263	15.263	2;3	6.5069E-05	8872	DP690-9	128.35	128.35			0.93978	1.1516	10.525	2	0	Median	47672000	23577000	24094000	10498	1046	9771	20546;20547;20548	49890;49891;49892;49893;49894;49895;49896	49895		7	9606
NCIVLIDSTPYR	0	1	Unmodified	1449.7286	0.72859953	967	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	15	0															1		17.674	17.674	2	0.00031557	12387	DP690-15	166.97	136.17			0.83748	0.97277	NaN	1	0	Median	22263000	12105000	10158000	10499	967	9772	20549	49897;49898;49899	49899		3	9606
NCLTNFHGMDLTR	0	1	Oxidation (M)	1593.7028	0.70279548	946	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	14.5	0.5														1	1		14.072	14.072	3	0.0027591	7534	DP690-15	79.875	48.2			0.97532	1.0883	8.4654	2	0	Median	423610000	212820000	210790000	10500	946	9773	20550;20551	49900;49901;49902;49903	49903	1465	4	9606
NCLTNFHGMDLTR	0	1	Unmodified	1577.7079	0.70788086	946	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	14	0														1			16.241	16.241	3	1.5157E-05	10580	DP690-14	130.1	101.33			0.89733	1.0178	NaN	1	0	Median	294840000	155910000	138930000	10501	946	9773	20552	49904;49905	49905		2	9606
NCNDFQYESK	1	0	Unmodified	1303.5139	0.5139153	1113	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	15	0															3		12.271	12.271	2	0.014877	5080	DP690-15	104.01	92.059			NaN	NaN	NaN	0	0	Median	8327100	8327100	0	10502	1113	9774	20553;20554;20555	49906;49907;49908;49909	49906		4	9606
NCPHIVVGTPGR	0	1	Unmodified	1305.6612	0.66118866	1237	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	0	13	0													1				11.73	11.73	3	2.8264E-05	4355	DP690-13	142.76	104.05			0.6768	0.82257	NaN	1	0	Median	49796000	29999000	19797000	10503	1237	9775	20556	49910;49911;49912;49913	49911		4	9606
NCPHVVVGTPGR	0	1	Unmodified	1291.6455	0.6455386	63	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	12.2	1.6									1				4				10.666	10.666	2;3	1.2541E-05	2987	DP690-13	127.52	92.024			0.77373	0.86192	4.028	3	0	Plateau	445850000	192680000	253170000	10504	63	9776	20557;20558;20559;20560;20561	49914;49915;49916;49917;49918;49919;49920;49921;49922;49923;49924;49925;49926	49920		13	9606
NCTAGAVYTYHEK	1	0	Unmodified	1512.6667	0.66672755	2454	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	14	0														2			11.208	11.208	2;3	0.00016076	3702	DP690-14	147.28	131.27			0.87775	1.0432	NaN	1	0	Median	15785000	8495000	7290200	10505	2454	9777	20562;20563	49927;49928;49929;49930	49929		4	9606
NDATAQAFLAEASVMTQLR	0	1	Oxidation (M)	2051.9946	0.99460363	719	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	1	0	5	0					1												20.261	20.261	2	0.067824	14701	DP690-5	80.719	51.169			NaN	NaN	NaN	0	0	Median	0	0	0	10506	719	9778	20564	49931	49931		1	9606
NDECVLEDNSQR	0	1	Unmodified	1477.6103	0.61033488	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								12.769	12.769	2	0.00031132	5593	DP690-9	150.15	130.39			0.89957	1.1275	NaN	1	0	Median	6171300	3778000	2393300	10507	2411	9779	20565	49932;49933;49934;49935	49933		4	9606
NDEELNKLLGK	2	0	Unmodified	1271.6721	0.67213051	442;1370	Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	1	12.6	3.77								2							1	2	15.913	15.913	2;3	1.0918E-05	9042	DP690-8	232.72	159.84			1.0004	1.0999	20.902	5	0	Median	1803499999.9999998	888240000	915290000	10508	442;1370	9780	20566;20567;20568;20569;20570	49936;49937;49938;49939;49940;49941;49942;49943;49944;49945;49946;49947;49948;49949;49950;49951;49952;49953	49951		18	9606
NDEELNKLLGR	1	1	Unmodified	1299.6783	0.67827852	378	Q93077;Q7L7L0;P04908	HIST1H2AC;HIST3H2A;HIST1H2AB	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E	yes	no	0	0	1	16	0																2	16.393	16.393	2;3	8.6635E-06	10297	DP690-16	216.12	156.1			0.99167	1.0583	1.4608	2	0	Median	165700000	81053000	84652000	10509	378	9781	20571;20572	49954;49955;49956;49957;49958;49959	49955		6	9606
NDELNHLEEEGR	0	1	Unmodified	1453.6433	0.64334957	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								13.764	13.764	2	0.055961	6856	DP690-9	86.344	28.098			NaN	NaN	NaN	0	0	Median	0	0	0	10510	1453	9782	20573	49960	49960		1	9606
NDFLELLR	0	1	Unmodified	1018.5447	0.54474515	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	13	0													1				21.079	21.079	2	2.4436E-15	16754	DP690-13	199.07	103.72			NaN	NaN	NaN	0	0	Median	16255000	16255000	0	10511	229	9783	20574	49961;49962;49963	49962		3	9606
NDFTEEEEAQVR	0	1	Unmodified	1465.6321	0.63211618	1019	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	12	4								1								1	14.479	14.479	2	3.0354E-10	7855	DP690-16	275.01	260.55			0.84543	0.9134	4.8892	2	0	Median	210900000	113860000	97046000	10512	1019	9784	20575;20576	49964;49965;49966;49967;49968;49969;49970;49971;49972;49973	49967		10	9606
NDFTEEEEAQVRK	1	1	Unmodified	1593.7271	0.7270792	1019	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	1	12	4								2								2	13.002	13.002	2;3	2.2237E-10	5955	DP690-16	257.09	166.26			0.90627	1.0352	11.791	4	0	Median	103860000	54263000	49596000	10513	1019	9785	20577;20578;20579;20580	49974;49975;49976;49977;49978;49979;49980;49981;49982;49983;49984;49985;49986;49987;49988;49989;49990	49976		17	9606
NDGAAILAAVSSIAQK	1	0	Unmodified	1527.8257	0.82567103	607	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	11	0											1						21.576	21.576	2	0.0021782	18739	DP690-11	86.756	51.104			0.7567	0.93289	NaN	1	0	Median	17917000	10536000	7380800	10514	607	9786	20581	49991;49992	49991		2	9606
NDHDDDEDEEVISK	1	0	Unmodified	1658.6544	0.65436777	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										1							11.614	11.614	2	4.9246E-09	4567	DP690-10	198.37	151.53			0.80273	0.98222	NaN	1	0	Median	28135000	15064000	13071000	10515	1158	9787	20582	49993;49994;49995;49996;49997	49994		5	9606
NDIASHPPVEGSYAPR	0	1	Unmodified	1708.8169	0.81689726	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	11	0											1						13.115	13.115	2	0.040855	6591	DP690-11	93.228	45.04			NaN	NaN	NaN	0	0	Median	0	0	0	10516	1524	9788	20583	49998	49998		1	9606
NDIFEDAGILCQR	0	1	Unmodified	1549.7195	0.7194914	90	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	0	0	11	0											1						19.981	19.981	2	0.0014415	16513	DP690-11	136.52	72.821			NaN	NaN	NaN	0	0	Median	16498000	16498000	0	10517	90	9789	20584	49999	49999		1	9606
NDIVNMLVGNK	1	0	Oxidation (M)	1231.6231	0.62307182	2175	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	1	0	10	3.56							1	1							1		17.441	17.441	2	0.00012842	10797	DP690-8	128.35	94.142			0.7828	0.90231	9.5227	3	0	Median	74343000	39302000	35041000	10518	2175	9790	20585;20586;20587	50000;50001;50002;50003;50004;50005;50006;50007;50008;50009;50010	50010	2660	11	9606
NDIVNMLVGNK	1	0	Unmodified	1215.6282	0.6281572	2175	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	7	0							1										19.745	19.745	2	0.0082159	14321	DP690-7	106.68	68.523			NaN	NaN	NaN	0	0	Median	3146200	3146200	0	10519	2175	9790	20588	50011	50011		1	9606
NDKDKPLPPLLAR	2	1	Unmodified	1475.846	0.84601255	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	2	10	0										1							13.327	13.327	3	0.0028423	7042	DP690-10	68.463	43.534			0.50704	0.57859	NaN	1	0	Median	188190000	117360000	70834000	10520	1297	9791	20589	50012;50013;50014;50015	50013		4	9606
NDLAVVDVR	0	1	Unmodified	999.53491	0.53490874	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11.5	0.5											4	4					15.187	15.187	2	0.0047319	9320	DP690-12	125.16	36.791			NaN	NaN	NaN	0	0	Median	58735000	0	58735000	10521	534	9792	20590;20591;20592;20593;20594;20595;20596;20597	50016;50017;50018;50019;50020;50021;50022;50023;50024;50025	50021		10	9606
NDLSPASSGNAVYDFFIGR	0	1	Unmodified	2028.9541	0.95411902	1292	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	10	0.816									1	1	1						22.73	22.73	2	8.2706E-14	18000	DP690-9	193.11	163.01			0.9037	1.1317	14.556	3	0	Median	77595000	40231000	37364000	10522	1292	9793	20598;20599;20600	50026;50027;50028;50029;50030;50031;50032;50033;50034;50035;50036	50034		11	9606
NDMTYNYANR	0	1	Unmodified	1260.5193	0.51933503	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	10	0										2							13.192	13.192	2	0.01305	6881	DP690-10	110.41	80.153			NaN	NaN	NaN	0	0	Median	0	0	0	10523	103	9794	20601;20602	50037;50038	50038		2	9606
NDNDSWDYTKPYLGR	1	1	Unmodified	1842.8173	0.81729119	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	1	12	0												1					16.897	16.897	2	6.9568E-18	11670	DP690-12	282.05	260.75			0.74619	0.95905	NaN	1	0	Median	31241000	20165000	11077000	10524	1750	9795	20603	50039;50040;50041;50042	50040		4	9606
NDNDTFTVK	1	0	Unmodified	1052.4775	0.47745344	549;1270	P21333;Q14315	FLNA;FLNC	Filamin-A;Filamin-C	no	no	0	0	0	8.83	3.08		1								4	1						12.606	12.606	2	4.3762E-05	5929	DP690-10	158.07	124.56			0.82019	0.88278	10.708	3	0	Plateau	1535999999.9999998	1070699999.9999999	465350000	10525	549;1270	9796	20604;20605;20606;20607;20608;20609	50043;50044;50045;50046;50047;50048;50049;50050;50051;50052	50045		10	9606
NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK	1	0	Unmodified	4384.1191	0.119116	1031	P68104	EEF1A1	Elongation factor 1-alpha 1	yes	yes	0	0	0	7.67	3.77					2								1				19.961	19.961	4;5	6.6335E-06	14329	DP690-5	71.727	58.052			0.67194	0.72076	16.328	2	0	Median	175560000	102040000	73523000	10526	1031	9797	20610;20611;20612	50053;50054;50055;50056	50055		3	9606
NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK	1	0	Oxidation (M)	4400.114	0.11403062	1031	P68104	EEF1A1	Elongation factor 1-alpha 1	yes	yes	0	1	0	5	0					1												19.097	19.097	5	1.0539E-11	13244	DP690-5	85.628	73.741			0.60647	0.60263	NaN	1	0	Median	198710000	123980000	74734000	10527	1031	9797	20613	50057;50058;50059;50060	50059	1565	4	9606
NDPYHPDHFNCANCGK	1	0	Unmodified	1944.7632	0.76316391	774	P48059	LIMS1	LIM and senescent cell antigen-like-containing domain protein 1	yes	yes	0	0	0	10	4						1								1			10.873	10.873	3	2.1816E-07	3273	DP690-14	148.85	132.97			0.80277	0.92636	32.414	2	0	Median	32016000	16493000	15523000	10528	774	9798	20614;20615	50061;50062;50063;50064;50065	50062		5	9606
NDQCYDDIR	0	1	Unmodified	1197.4721	0.47205049	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	13	2.45										1			1			1	12.534	12.534	2	0.00065327	5261	DP690-13	143.37	27.88			0.87974	0.98555	2.4141	2	0	Median	634130000	315750000	318380000	10529	2395	9799	20616;20617;20618	50066;50067;50068;50069;50070;50071	50069		6	9606
NDQCYEDIR	0	1	Unmodified	1211.4877	0.48770055	1980	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	12	0												1					12.89	12.89	2	0.00050928	6040	DP690-12	150.36	138.15			0.83222	0.96235	NaN	1	0	Median	122710000	67641000	55068000	10530	1980	9800	20619	50072;50073	50072		2	9606
NDQDTWDYTNPNLSGQGDPGSNPNK	1	0	Unmodified	2733.1539	0.15389406	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	12	0												1					16.653	16.653	2	7.3547E-48	11382	DP690-12	237.06	213.12			NaN	NaN	NaN	0	0	Median	9303900	9303900	0	10531	494	9801	20620	50074;50075	50074		2	9606
NDQDTWDYTNPNLSGQGDPGSNPNKR	1	1	Unmodified	2889.255	0.25500509	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	1	11.5	1.5									1			2	1				15.275	15.275	3	6.8957E-55	9282	DP690-12	260.97	245.66			0.6102	0.67719	29.253	4	0	Median	551280000	341500000	209780000	10532	494	9802	20621;20622;20623;20624	50076;50077;50078;50079;50080;50081;50082;50083;50084;50085;50086;50087	50078		12	9606
NDSVVAGGGAIEMELSK	1	0	Oxidation (M)	1691.8036	0.80361496	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	0	8	4				1								1					17.378	17.378	2	3.3961E-07	11551	DP690-4	160.48	141.02			1.1576	1.3297	43.182	2	0	Median	29405000	13518000	15887000	10533	1959	9803	20625;20626	50088;50089;50090;50091;50092;50093;50094	50092	2502	7	9606
NDTKEDVFVHQTAIK	2	0	Unmodified	1743.8792	0.87916317	1025;507	P16989;Q9Y2T7;P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	no	no	0	0	1	10	4.1					2								2	1			12.657	12.657	2;3	2.7167E-16	5413	DP690-13	230.57	198.91			1.009	1.1079	27.14	5	0	Median	889850000	431950000	457910000	10534	507;1025	9804	20627;20628;20629;20630;20631	50095;50096;50097;50098;50099;50100;50101;50102;50103;50104;50105;50106;50107;50108;50109;50110;50111;50112	50096		18	9606
NDTKEDVFVHQTAIKK	3	0	Unmodified	1871.9741	0.97412619	1025;507	P16989;P67809	YBX3;YBX1	Y-box-binding protein 3;Nuclease-sensitive element-binding protein 1	no	no	0	0	2	13.3	0.471													2	1			11.008	11.008	3;4	1.2637E-17	3351	DP690-13	218.28	174.52			0.88395	0.90664	22.45	3	0	Median	182020000	101910000	80116000	10535	507;1025	9805	20632;20633;20634	50113;50114;50115;50116;50117;50118;50119;50120;50121;50122;50123;50124	50115		12	9606
NDTPCGTTIGPILASR	0	1	Unmodified	1671.825	0.82501911	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	4.75	0.433				1	3												16.961	16.961	2	2.8049E-05	10353	DP690-5	182.25	132.14			0.48417	0.56413	NaN	1	0	Median	106840000	102210000	4625700	10536	2385	9806	20635;20636;20637;20638	50125;50126;50127;50128;50129	50127		5	9606
NDVLAHQATVETVNK	1	0	Unmodified	1637.8373	0.83729835	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9.5	0.5									1	1							12.417	12.417	2	4.7149E-17	5036	DP690-9	276.28	223.2			0.99359	1.2323	41.214	2	0	Median	25200000	10579000	14622000	10537	2411	9807	20639;20640	50130;50131;50132;50133;50134;50135	50131		6	9606
NDVMNLLESAGFSR	0	1	Oxidation (M)	1567.7301	0.73005609	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	1	0	10	0										1							20.729	20.729	2	0.00012425	17796	DP690-10	124.12	82.96			0.5772	0.72185	NaN	1	0	Median	61383000	42193000	19190000	10538	2424	9808	20641	50136	50136	2857	1	9606
NDVMNLLESAGFSR	0	1	Unmodified	1551.7351	0.73514147	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							22.408	22.408	2	0.00017677	19932	DP690-10	118.61	94.331			1.1272	1.4071	NaN	1	0	Median	27823000	13400000	14423000	10539	2424	9808	20642	50137;50138	50137		2	9606
NDYDDTIPILDALK	1	0	Unmodified	1604.7934	0.79336785	2330	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	3	0			2														22.761	22.761	2	0.012121	18372	DP690-3	102.62	56.029			NaN	NaN	NaN	0	0	Median	1474700	0	1474700	10540	2330	9809	20643;20644	50139;50140;50141	50139		3	9606
NDYLIGDVYVER	0	1	Unmodified	1454.7042	0.70415892	292	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	2	0		1															18.599	18.599	2	0.027417	12019	DP690-2	68.626	26.277			0.92007	0.94112	NaN	1	0	Median	2195400	1034000	1161300	10541	292	9810	20645	50142	50142		1	9606
NEADGMPINVGDGGLFEK	1	0	Oxidation (M)	1877.8465	0.84654241	594	P26441	CNTF	Ciliary neurotrophic factor	yes	yes	0	1	0	14	0														1			24.436	24.436	2	0.031383	20977	DP690-14	60.161	16.743			0.88263	1.0499	NaN	1	0	Median	136750000	71555000	65196000	10542	594	9811	20646	50143;50144	50144	784	2	9606
NEAGIVSCTAR	0	1	Unmodified	1176.5557	0.55572054	1758	Q8WX93;Q86TC9	PALLD;MYPN	Palladin;Myopalladin	yes	no	0	0	0	9.75	4.66			1						1		1					1	11.75	11.75	2	2.1218E-06	4797	DP690-11	217.66	169.7			0.8935	1.0437	14.572	4	0	Median	426860000	227940000	198920000	10543	1758	9812	20647;20648;20649;20650	50145;50146;50147;50148;50149;50150;50151;50152;50153	50148		9	9606
NEALAALLR	0	1	Unmodified	969.56073	0.56072956	484	P13797	PLS3	Plastin-3	yes	yes	0	0	0	8	4				1								1					18.186	18.186	2	0.0045783	12511	DP690-4	125.81	89.419			NaN	NaN	NaN	0	0	Median	25124000	10955000	14168000	10544	484	9813	20651;20652	50154;50155;50156;50157	50156		4	9606
NEAPEGNLGDFAEFQR	0	1	Unmodified	1792.8016	0.80164113	2375	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	11	0											1						18.414	18.414	2	0.053568	14419	DP690-11	83.877	54.333			NaN	NaN	NaN	0	0	Median	14128000	0	14128000	10545	2375	9814	20653	50158	50158		1	9606
NECDPALALLSDYVLHNSNTMR	0	1	Oxidation (M)	2548.1686	0.16862161	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	1	0	3	0			1														22.11	22.11	3	0.00051571	17607	DP690-3	86.136	67.841			1.3143	1.5052	NaN	1	0	Median	14882000	5919700	8961800	10546	1190	9815	20654	50159;50160;50161;50162;50163	50160	1844	5	9606
NEDEDSPNKLYTLVTYVPVTTFK	2	0	Unmodified	2672.3221	0.32212858	1003	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	1	16	0																1	21.305	21.305	3	5.6629E-05	16167	DP690-16	121.48	103.99			0.77341	0.87606	NaN	1	0	Median	28197000	15239000	12958000	10547	1003	9816	20655	50164;50165	50165		2	9606
NEDNGAPENSVEKPHEKPEAR	2	1	Unmodified	2346.0836	0.083629648	1520	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	2	13	0													1				10.185	10.185	5	0.0048072	2317	DP690-13	58.123	46.763			0.5055	0.5581	NaN	1	0	Median	7816100	5859900	1956200	10548	1520	9817	20656	50166	50166		1	9606
NEEDAAELVALAQAVNAR	0	1	Unmodified	1882.9385	0.93846896	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3.25	0.433			3	1													21.533	21.533	2	1.3652000000000001E-182	16974	DP690-3	402.04	321.17			NaN	NaN	NaN	0	0	Median	13158000	0	13158000	10549	561	9818	20657;20658;20659;20660	50167;50168;50169;50170	50169		4	9606
NEEPSEEEIDAPKPK	2	0	Unmodified	1710.7948	0.79482442	2195	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	11	0											1						11.964	11.964	2	0.027391	4925	DP690-11	148.62	65.971			NaN	NaN	NaN	0	0	Median	0	0	0	10550	2195	9819	20661	50171	50171		1	9606
NEFIPTNFEILPLEK	1	0	Unmodified	1802.9455	0.94545182	493	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	3	0			1														22.431	22.431	2	0.00086838	17998	DP690-3	100.38	100.38			0.56421	0.59212	NaN	1	0	Median	5511200	3503500	2007700	10551	493	9820	20662	50172;50173	50172		2	9606
NEGFFLNYLFSGMDDDGMESR	0	1	2 Oxidation (M)	2474.9995	0.99949059	332	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	2	0	10	0										1							23.745	23.745	2	0.002634	21676	DP690-10	79.317	59.713			1.1289	1.3559	NaN	1	0	Median	3083900	1259900	1823900	10552	332	9821	20663	50174	50174	344;345	1	9606
NEGNIFPNPEATFVK	1	0	Unmodified	1675.8206	0.82058566	2499	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	10	1									1		1						19.023	19.023	2	0.0030824	15246	DP690-11	125.36	78.404			NaN	NaN	NaN	0	0	Median	19282000	3904000	15378000	10553	2499	9822	20664;20665	50175;50176	50175		2	9606
NEGVATYAAAVLFR	0	1	Unmodified	1480.7674	0.76742787	658	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	11	0											1						21.194	21.194	2	0.005341	18192	DP690-11	80.737	80.737			0.50146	0.59925	NaN	1	0	Median	30460000	21568000	8892200	10554	658	9823	20666	50177	50177		1	9606
NEHRPASALVNPLAR	0	2	Unmodified	1643.8856	0.88558595	131	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	1	2	0		1															13.052	13.052	3	0.0013834	5408	DP690-2	83.633	65.833			1.285	1.2835	NaN	1	0	Median	2796200	953480	1842700	10555	131	9824	20667	50178;50179;50180	50178		3	9606
NEILTAILASLTAR	0	1	Unmodified	1484.8562	0.85624288	2064	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	4	0				1													25.614	25.614	2	0.030524	19700	DP690-4	94.191	61.668			NaN	NaN	NaN	0	0	Median	0	0	0	10556	2064	9825	20668	50181	50181		1	9606
NEKDFGLTTFGPLK	2	0	Unmodified	1565.809	0.80895834	2575				yes	yes	0	0	1	8	4				1								1					18.034	18.034	3	0.0012599	12352	DP690-4	87.831	45.406	+		1.3663	1.4948	50.618	2	0	Median	117710000	48295000	69414000	10557	2575	9826	20669;20670	50182;50183;50184;50185;50186	50186		5	9606
NELEIPGQYDGR	0	1	Unmodified	1389.6525	0.6524577	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.67	0.471									1	2							16.24	16.24	2	3.8883E-10	11239	DP690-10	223.14	141.17			0.77139	0.85776	6.8956	2	0	Median	690530000	429420000	261110000	10558	1046	9827	20671;20672;20673	50187;50188;50189;50190;50191;50192	50188		6	9606
NELESYAYSLK	1	0	Unmodified	1315.6296	0.62959699	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	9	3.56				1							1	1					17.52	17.52	2	1.5854E-05	11642	DP690-4	191.4	134.59			1.5574	1.6729	46.917	3	0	Plateau	219130000	97597000	121540000	10559	462	9828	20674;20675;20676	50193;50194;50195;50196;50197;50198;50199;50200;50201	50199		9	9606
NELLLNQEVNK	1	0	Unmodified	1312.6987	0.69867961	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								15.056	15.056	2	0.0020147	8611	DP690-9	117.71	62.983			0.73718	0.94195	NaN	1	0	Median	11109000	6971200	4137400	10560	1762	9829	20677	50202;50203;50204	50204		3	9606
NEMNCKEDQFQLSLLAAMGNTQR	1	1	2 Oxidation (M)	2729.2207	0.22073353	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	2	1	3	0			1														17.292	17.292	3	0.022862	11815	DP690-3	73.153	51.952			NaN	NaN	NaN	0	0	Median	6985400	0	6985400	10561	877	9830	20678	50205	50205	1330;1331	1	9606
NENEEILERPAQLANAR	0	2	Unmodified	1965.9868	0.98681614	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	11	0											2						15.43	15.43	2;3	8.5009E-05	10093	DP690-11	126.34	74.405			0.81686	1.007	0.61196	2	0	Median	277120000	148420000	128700000	10562	2340	9831	20679;20680	50206;50207	50207		2	9606
NENPVDYTVQIPPSTTYAITPMK	1	0	Unmodified	2578.2625	0.26250522	1170	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	11	0											1						19.87	19.87	2	0.056826	16391	DP690-11	104.94	69.995			NaN	NaN	NaN	0	0	Median	0	0	0	10563	1170	9832	20681	50208	50208		1	9606
NENQLIIFADDTYPR	0	1	Unmodified	1807.8741	0.87407779	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10.7	1.25									1		1	1					20.194	20.194	2	2.3503E-14	16879	DP690-11	216.84	178.87			0.79012	0.94361	NaN	1	0	Median	36172000	22725000	13447000	10564	1329	9833	20682;20683;20684	50209;50210;50211;50212;50213	50209		5	9606
NEQDAYAINSYTR	0	1	Unmodified	1543.6903	0.69029976	578	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	10	4						1								1			14.501	14.501	2	0.0036545	8156	DP690-14	86.898	45.781			0.89327	1.0167	20.118	2	0	Median	326100000	183380000	142720000	10565	578	9834	20685;20686	50214;50215;50216;50217;50218	50215		5	9606
NEQFPVLDHLLSIIK	1	0	Unmodified	1764.9774	0.97742065	271	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	10	0										1							23.773	23.773	3	0.086448	21722	DP690-10	34.851	23.806			0.83181	0.9979	NaN	1	0	Median	3974500	2479100	1495400	10566	271	9835	20687	50219	50219		1	9606
NESGGHAVPPGSETHFR	0	1	Unmodified	1777.8132	0.81320887	2472	Q9Y3E2	BOLA1	BolA-like protein 1	yes	yes	0	0	0	8	0								1									10.388	10.388	4	0.0016521	2948	DP690-8	73.498	47.52			0.66645	0.80443	NaN	1	0	Median	3306000	2071800	1234100	10567	2472	9836	20688	50220	50220		1	9606
NESLQPSLQSPQTELR	0	1	Unmodified	1825.917	0.91700524	1405	Q53GT1	KLHL22	Kelch-like protein 22	yes	yes	0	0	0	4	0				1													15.823	15.823	2	2.5749E-12	9724	DP690-4	204.85	173.56			0.94051	1.0928	NaN	1	0	Median	6908300	2894200	4014100	10568	1405	9837	20689	50221;50222	50221		2	9606
NETIAQEDKIK	2	0	Unmodified	1287.667	0.66704513	1738	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	1	11	0											1						10.725	10.725	2	0.00071408	3172	DP690-11	144.77	97.062			0.71873	0.85229	NaN	1	0	Median	39789000	22251000	17539000	10569	1738	9838	20690	50223;50224	50223		2	9606
NETLDATHLAEFHQIEGVVADHGLTLGHLMGVLR	0	1	Unmodified	3692.8733	0.87331329	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	12	0												1					22.39	22.39	5	0.059707	18830	DP690-12	24.438	9.4607			0.83384	1.0154	NaN	1	0	Median	10353000	4485700	5867000	10570	2434	9839	20691	50225	50225		1	9606
NEVDMQVLHLLGPK	1	0	Unmodified	1591.8392	0.83921261	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	11	0											1						19.248	19.248	3	0.0031465	15574	DP690-11	74.537	55.479			0.78176	0.94768	NaN	1	0	Median	41997000	25928000	16070000	10571	770	9840	20692	50226;50227	50226		2	9606
NFAFLEFR	0	1	Unmodified	1042.5236	0.52361577	592	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	12	0												1					20.729	20.729	2	0.058645	16741	DP690-12	143.61	106.59			0.83736	0.99319	NaN	1	0	Median	47739000	25866000	21874000	10572	592	9841	20693	50228	50228		0	9606
NFALLGVGTSK	1	0	Unmodified	1105.6132	0.61315906	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														18.038	18.038	2	0.00018432	12642	DP690-3	156.83	118.07			0.89043	0.93733	NaN	1	0	Median	43184000	22093000	21091000	10573	5	9842	20694	50229;50230	50229		2	9606
NFAPGETPAAIANSSGQPYQPLR	0	1	Unmodified	2385.1713	0.17132244	1588	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	12	0												1					17.791	17.791	2	6.7354E-12	12859	DP690-12	190.41	154.81			NaN	NaN	NaN	0	0	Median	8698400	8698400	0	10574	1588	9843	20695	50231;50232	50231		2	9606
NFDFEDVFVK	1	0	Unmodified	1258.587	0.58700389	1371	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	14	0														1			21.266	21.266	2	0.00019517	17244	DP690-14	128.12	90.394			0.89611	1.0836	NaN	1	0	Median	30592000	15366000	15225000	10575	1371	9844	20696	50233;50234;50235	50233		3	9606
NFDQEGLVEHCK	1	0	Unmodified	1474.6511	0.65107749	2493	Q9Y508	RNF114	E3 ubiquitin-protein ligase RNF114	yes	yes	0	0	0	8.33	2.98							5								1		13.034	13.034	2;3	0.0011521	5911	DP690-7	135.55	78.2			0.60919	0.6624	NaN	1	0	Median	20422000	12783000	7639300	10576	2493	9845	20697;20698;20699;20700;20701;20702	50236;50237;50238;50239;50240;50241	50238		5	9606
NFDTGLQEYK	1	0	Unmodified	1213.5615	0.56151742	1361	Q16625	OCLN	Occludin	yes	yes	0	0	0	13	0													1				15.445	15.445	2	0.036326	9409	DP690-13	89.698	61.299			NaN	NaN	NaN	0	0	Median	15303000	15303000	0	10577	1361	9846	20703	50242	50242		1	9606
NFEHLIPDAPELIHDFLVNEK	1	0	Unmodified	2489.2591	0.25907482	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	9.67	0.943									2		1						23.131	23.131	3;4	9.9056E-05	20665	DP690-11	104.81	85.857			0.7575	0.92301	42.336	3	0	Plateau	37693000	19463000	18230000	10578	877	9847	20704;20705;20706	50243;50244;50245;50246;50247;50248	50244		6	9606
NFEQYTLDPGTR	0	1	Unmodified	1439.6681	0.66810776	294	O94851	MICAL2	Protein-methionine sulfoxide oxidase MICAL2	yes	yes	0	0	0	11	0											1						16.522	16.522	2	0.0021679	11673	DP690-11	93.096	50.758			0.8087	0.96492	NaN	1	0	Median	36279000	17633000	18646000	10579	294	9848	20707	50249;50250	50249		2	9606
NFGIGQDIQPK	1	0	Unmodified	1215.6248	0.62478638	984	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	14	0														1			15.592	15.592	2	0.00019308	9732	DP690-14	145.72	145.72			0.91904	1.0917	NaN	1	0	Median	140340000	70814000	69531000	10580	984	9849	20708	50251;50252;50253;50254	50254		4	9606
NFGSYVTHETK	1	0	Unmodified	1281.599	0.59896556	1016;1852	Q96FJ2;P63167	DYNLL2;DYNLL1	Dynein light chain 2, cytoplasmic;Dynein light chain 1, cytoplasmic	no	no	0	0	0	14.9	2.8								1								6	12.331	12.331	2;3	0.00018528	5087	DP690-8	144.77	127.3			1.2438	1.3785	NaN	1	0	Median	18273000	8383400	9889600	10581	1852;1016	9850	20709;20710;20711;20712;20713;20714;20715	50255;50256;50257;50258;50259;50260;50261;50262	50261		8	9606
NFHIFYQLLEGGEEETLR	0	1	Unmodified	2194.0695	0.069483134	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						21.61	21.61	3	0.00044584	18778	DP690-11	88.565	88.565			0.63417	0.77475	NaN	1	0	Median	17243000	10971000	6271900	10582	65	9851	20716	50263;50264	50263		2	9606
NFILDQCNVYNSGQR	0	1	Unmodified	1826.837	0.83698078	1376	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	11	0											1						17.359	17.359	2	1.6518E-05	12816	DP690-11	134.75	104.19			1.0698	1.2768	NaN	1	0	Median	34410000	18317000	16093000	10583	1376	9852	20717	50265;50266;50267	50265		3	9606
NFILDQTNVSAAAQR	0	1	Unmodified	1646.8376	0.8376327	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	7.2	3.49			2						1	1	1						17.168	17.168	2	1.0949E-19	12518	DP690-11	284.1	284.1			0.95877	0.92582	12.841	3	0	Plateau	600450000	304940000	295500000	10584	1078	9853	20718;20719;20720;20721;20722	50268;50269;50270;50271;50272;50273;50274;50275;50276;50277;50278;50279;50280;50281	50272		14	9606
NFIQAILTSLIEK	1	0	Unmodified	1488.8552	0.85518025	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	10	0										2							27.383	27.383	2	0.0026901	25605	DP690-10	90.653	90.653			0.90844	1.0485	NaN	1	0	Median	1539600	718730	820830	10585	2483	9854	20723;20724	50282;50283	50282		2	9606
NFLNAIATDIIHLHSQR	0	1	Unmodified	1962.0435	0.043543155	2225	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	3	0			1														21.239	21.239	4	0.065895	16668	DP690-3	46.873	31.348			0.94387	1.0241	NaN	1	0	Median	2214800	1163500	1051300	10586	2225	9855	20725	50284	50284		0	9606
NFLPILFNLYGQPVAAGDTPAPR	0	1	Unmodified	2470.3009	0.30088005	1420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	10	0										1							24.005	24.005	2	4.2626E-15	21925	DP690-10	169.98	155.01			0.67831	0.80634	NaN	1	0	Median	2384100	1368300	1015700	10587	1420	9856	20726	50285;50286	50285		2	9606
NFLSTPQFLYR	0	1	Unmodified	1384.7139	0.71393574	2013	Q9BUN8	DERL1	Derlin-1	yes	yes	0	0	0	11.2	2.28									1	1	1				1		19.954	19.954	2	9.5368E-05	14713	DP690-9	172.23	92.247			0.7522	0.8774	4.0486	4	0	Median	434840000	250060000	184780000	10588	2013	9857	20727;20728;20729;20730	50287;50288;50289;50290;50291;50292;50293;50294;50295;50296;50297;50298	50298		12	9606
NFLTFLEELSTPEGK	1	0	Unmodified	1723.8669	0.86686715	2367	Q9UK61	FAM208A	Protein FAM208A	yes	yes	0	0	0	10	0										1							25.583	25.583	2	0.00030195	23780	DP690-10	112.43	90.198			0.75394	0.9138	NaN	1	0	Median	6566300	3465000	3101300	10589	2367	9858	20731	50299;50300;50301	50301		3	9606
NFLTSLVAGLSTER	0	1	Unmodified	1506.8042	0.80420731	292	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	7.33	3.77		1								2							24.398	24.398	2	9.2401E-09	22391	DP690-10	199.8	123.66			NaN	NaN	NaN	0	0	Median	361210	0	361210	10590	292	9859	20732;20733;20734	50302;50303;50304	50303		3	9606
NFLVLAAHR	0	1	Unmodified	1039.5927	0.59269839	318	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	4	0				1													15.117	15.117	2	0.016295	8719	DP690-4	83.206	54.783			0.79398	0.92379	NaN	1	0	Median	8725500	5322300	3403200	10591	318	9860	20735	50305;50306	50305		2	9606
NFLYDIAGCSGTFTVQNR	0	1	Unmodified	2061.9578	0.95782419	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	3.5	0.5			1	1													20.688	20.688	2	3.6169000000000005E-30	15972	DP690-3	245.5	222.35			0.9495	1.0735	14.901	2	0	Median	10617000	5691900	4924900	10592	813	9861	20736;20737	50307;50308;50309;50310;50311;50312;50313;50314	50309		8	9606
NFQEEQINTR	0	1	Unmodified	1277.6	0.60002819	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	7	4			1								1						12.846	12.846	2	2.2426E-05	5739	DP690-3	177.7	146.21			1.1845	1.3319	30.905	2	0	Median	292520000	146660000	145860000	10593	1613	9862	20738;20739	50315;50316;50317;50318;50319;50320;50321	50321		7	9606
NFQMASITSPSLVVECGGER	0	1	Oxidation (M)	2197.0144	0.014352795	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	1	0	10	0										1							17.624	17.624	2	4.0984E-09	13389	DP690-10	161.04	107.48			NaN	NaN	NaN	0	0	Median	21271000	21271000	0	10594	2276	9863	20740	50322	50322	2730	1	9606
NFQNIFPPSATLHLSNIPPSVSEEDLK	1	0	Unmodified	2993.5135	0.5134516	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	12	0												8					23.852	23.852	2;3	1.0271E-11	16302	DP690-12	153.31	153.31			0.56305	0.63228	5.2838	2	0	Median	503390000	314060000	189330000	10595	595	9864	20741;20742;20743;20744;20745;20746;20747;20748	50323;50324;50325;50326;50327;50328;50329;50330;50331;50332;50333;50334;50335;50336;50337;50338;50339	50326		17	9606
NFSDNQLQEGK	1	0	Unmodified	1278.584	0.58404378	690	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	12.2	3.87							1	1							2	1	12.693	12.693	2	1.7611E-10	5610	DP690-15	179.37	128.67			0.89228	0.96246	2.2765	2	0	Median	256260000	135880000	120380000	10596	690	9865	20749;20750;20751;20752;20753	50340;50341;50342;50343;50344;50345;50346;50347;50348;50349;50350;50351	50342		12	9606
NFSGKDDIQALDIFLANLPEAK	2	0	Unmodified	2418.2431	0.2430904	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	1	9	0									1								23.663	23.663	3	0.055049	19095	DP690-9	63.936	42.338			NaN	NaN	NaN	0	0	Median	1347600	1347600	0	10597	1453	9866	20754	50352	50352		1	9606
NFSNMDDEENYSAASK	1	0	Oxidation (M)	1836.7108	0.71083679	171	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	1	0	3	0			1														12.897	12.897	2	0.00037484	5782	DP690-3	139.74	112.42			NaN	NaN	NaN	0	0	Median	2693500	2693500	0	10598	171	9867	20755	50353;50354	50353	191	2	9606
NFTMDTESSVYNFEGEDYREK	1	1	Oxidation (M)	2576.0649	0.06492762	198	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	1	1	11	0											1						17.017	17.017	3	0.01227	12356	DP690-11	85.61	75.858			NaN	NaN	NaN	0	0	Median	17461000	0	17461000	10599	198	9868	20756	50355	50355	209	1	9606
NFTQGLVEDAPDGSDASQLLHQAEVAQQEFLEVK	1	0	Unmodified	3712.7857	0.7856633	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								23.837	23.837	3	5.5758E-08	19266	DP690-9	81.847	68.504			0.54835	0.65494	NaN	1	0	Median	1853000	1104400	748550	10600	2411	9869	20757	50356;50357	50356		2	9606
NFTTEQVTAMLLSK	1	0	Oxidation (M)	1597.8022	0.8021584	654	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	1	0	3	0			1														19.109	19.109	2	0.031937	14059	DP690-3	87.618	43.309			NaN	NaN	NaN	0	0	Median	4748800	0	4748800	10601	654	9870	20758	50358	50358	922	1	9606
NFVIQGGDPTGTGTGGESYWGKPFK	2	0	Unmodified	2599.2343	0.23431663	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	1	12	0												1					18.17	18.17	3	0.0056127	13459	DP690-12	89.043	45.233			NaN	NaN	NaN	0	0	Median	19744000	19744000	0	10602	1200	9871	20759	50359	50359		1	9606
NFVLPEEIIQEVR	0	1	Unmodified	1584.8512	0.8511575	2229	Q9NV56	MRGBP	MRG/MORF4L-binding protein	yes	yes	0	0	0	15	0															1		21.949	21.949	2	0.00051093	17251	DP690-15	108.7	86.641			0.83404	0.96685	NaN	1	0	Median	5515800	3004100	2511700	10603	2229	9872	20760	50360;50361;50362;50363;50364	50362		5	9606
NFWSHETR	0	1	Unmodified	1075.4835	0.48354187	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								12.242	12.242	3	0.032535	4852	DP690-9	71.379	28.781			NaN	NaN	NaN	0	0	Median	812320	812320	0	10604	1046	9873	20761	50365;50366	50365		2	9606
NFYLCPV	0	0	Unmodified	911.42112	0.42112454	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						20.564	20.564	1	0.037199	17669	DP690-11	92.279	62.903			NaN	NaN	NaN	0	0	Median	0	0	0	10605	897	9874	20762	50367	50367		1	9606
NFYQEHPDLAR	0	1	Unmodified	1388.6473	0.64731274	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	11	1.41									1			2					13.343	13.343	2;3	4.8208E-05	6666	DP690-12	179.42	139.57			0.78336	0.77	13.698	3	0	Plateau	3563899999.9999995	1966899999.9999998	1596999999.9999998	10606	517	9875	20763;20764;20765	50368;50369;50370;50371;50372;50373;50374;50375;50376;50377;50378;50379	50375		12	9606
NFYVEHPEVAR	0	1	Unmodified	1359.6571	0.65714914	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11.3	0.471											2	1					13.4	13.4	2;3	0.0013632	6966	DP690-11	107.06	81.607			0.72706	0.75513	6.3994	3	0	Plateau	1216100000	720520000	495570000	10607	1793	9876	20766;20767;20768	50380;50381;50382;50383;50384;50385;50386	50381		7	9606
NGDLDEVKDYVAK	2	0	Unmodified	1464.7096	0.70963822	916	P58546	MTPN	Myotrophin	yes	yes	0	0	1	8	0								1									15.278	15.278	2	0.00020047	8383	DP690-8	125.97	86.348			0.87997	1.0217	NaN	1	0	Median	8490900	4817000	3673900	10608	916	9877	20769	50387;50388	50388		2	9606
NGDTSTEEPMLNVQR	0	1	Oxidation (M)	1705.7577	0.7577274	1056	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	1	0	15	0															2		13.58	13.58	2	0.028965	6863	DP690-15	87.713	58.468			NaN	NaN	NaN	0	0	Median	5057600	5057600	0	10609	1056	9878	20770;20771	50389;50390;50391	50390	1653	3	9606
NGEFFMSPNDFVTR	0	1	Oxidation (M)	1675.7301	0.73005609	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	1	0	12	0												1					18.493	18.493	2	0.00035108	13849	DP690-12	116.71	90.302			0.87258	1.036	NaN	1	0	Median	54501000	29801000	24700000	10610	2359	9879	20772	50392;50393	50392	2794	2	9606
NGEFFMSPNDFVTR	0	1	Unmodified	1659.7351	0.73514147	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	12	0												1					20.306	20.306	2	8.9146E-14	16266	DP690-12	215.04	170.62			0.73995	0.88687	NaN	1	0	Median	23112000	13565000	9546900	10611	2359	9879	20773	50394;50395;50396	50395		3	9606
NGGLGHMNIALLSDLTK	1	0	Oxidation (M)	1768.9142	0.91416847	620	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	1	0	15	0															2		17.954	17.954	2;3	0.00043439	12676	DP690-15	136.3	73.96			0.7147	0.84377	NaN	1	0	Median	32784000	19054000	13730000	10612	620	9880	20774;20775	50397;50398;50399;50400;50401	50401	854	5	9606
NGHVGISFVPK	1	0	Unmodified	1153.6244	0.62439245	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.67	0.471									1	2							13.624	13.624	2;3	1.2509E-05	7514	DP690-10	192.64	160.88			0.72984	0.79195	10.405	3	0	Plateau	913130000	498330000	414800000	10613	549	9881	20776;20777;20778	50402;50403;50404;50405;50406;50407;50408;50409;50410;50411;50412;50413	50404		12	9606
NGIKVNFKIR	2	1	Unmodified	1187.7139	0.71387616	57	CON__Q9U6Y5			yes	yes	0	0	2	6	0.816					1	1	1										13.194	13.194	3	0.00022672	6119	DP690-7	120.31	67.182		+	0.94939	1.0073	NaN	1	0	Median	96317000	8132100	88185000	10614	57	9882	20779;20780;20781	50414;50415;50416;50417;50418	50418		5	
NGLAEGTEQEEEEEDEQVR	0	1	Unmodified	2189.9196	0.91964359	1295	Q147X3	NAA30	N-alpha-acetyltransferase 30	yes	yes	0	0	0	13	0													3				14.209	14.209	2	7.8896E-160	7661	DP690-13	350.43	322.2			NaN	NaN	NaN	0	0	Median	10613000	10613000	0	10615	1295	9883	20782;20783;20784	50419;50420;50421;50422;50423	50420		5	9606
NGMAIIRPPGHHAQHSLMDGYCMFNHVAVAAR	0	2	3 Oxidation (M)	3605.6649	0.66493397	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	3	1	3.5	0.5			1	1													13.95	13.95	6	0.0048774	7238	DP690-3	45.635	37.132			0.64404	0.67052	3.7119	2	0	Median	63763000	36282000	27481000	10616	2316	9884	20785;20786	50424;50425	50424	2763;2764;2765	2	9606
NGNHVANSPVSIMVVQSEIGDAR	0	1	Oxidation (M)	2409.1707	0.17067052	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	10	0										1							16.963	16.963	3	0.0010432	12351	DP690-10	99.964	65.96			NaN	NaN	NaN	0	0	Median	37536000	37536000	0	10617	250	9885	20787	50426;50427;50428	50426	247	3	9606
NGPALQEAYVR	0	1	Unmodified	1216.62	0.62003536	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	9.67	4.03				1								1	1				14.093	14.093	2	0.00011604	7689	DP690-12	150.27	91.671			0.67346	0.79545	19.558	2	0	Median	219760000	108660000	111100000	10618	2361	9886	20788;20789;20790	50429;50430;50431;50432;50433;50434	50429		6	9606
NGPGFHNDIDSNSTIQEILIPASK	1	0	Unmodified	2566.2663	0.26634504	1875	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	12	0												1					19.214	19.214	3	7.0595E-05	14758	DP690-12	118.51	118.51			0.71565	0.85279	NaN	1	0	Median	39677000	23395000	16282000	10619	1875	9887	20791	50435;50436;50437	50435		3	9606
NGQDLGVAFK	1	0	Unmodified	1047.5349	0.53490874	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	7	4			1								1						14.877	14.877	2	0.0028438	8449	DP690-3	96.668	61.312			1.0546	1.148	13.491	2	0	Median	272500000	133160000	139340000	10620	1078	9888	20792;20793	50438;50439;50440;50441	50440		4	9606
NGQGFILVYSLVNQQSFQDIKPMR	1	1	Oxidation (M)	2797.4221	0.42213418	945;2476	Q9Y3L5;P10114;P61225	RAP2C;RAP2A;RAP2B	Ras-related protein Rap-2c;Ras-related protein Rap-2a;Ras-related protein Rap-2b	no	no	0	1	1	16	0																1	21.479	21.479	3	0.00014096	16354	DP690-16	110.98	96.52			0.56649	0.66329	NaN	1	0	Median	3312400	1841500	1470800	10621	2476;945	9889	20794	50442;50443;50444	50443	1463	3	9606
NGQHVASSPIPVVISQSEIGDASR	0	1	Unmodified	2447.2405	0.24046464	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8	3.54		1							1	1	1						17.15	17.15	3	1.8126E-37	12558	DP690-10	215.59	190.51			0.69334	0.80871	13.641	4	0	Median	582760000	326420000	256340000	10622	549	9890	20795;20796;20797;20798	50445;50446;50447;50448;50449;50450;50451;50452;50453;50454;50455;50456;50457;50458;50459;50460;50461	50447		17	9606
NGQHVASSPIPVVISQSEIGDASRVR	0	2	Unmodified	2702.41	0.40998959	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10	0										2							16.59	16.59	3;4	5.3171E-38	11821	DP690-10	219.61	188.3			0.66624	0.79353	3.0716	2	0	Median	417470000	260230000	157250000	10623	549	9891	20799;20800	50462;50463;50464;50465	50462		4	9606
NGQIQYSIGGPNPGR	0	1	Unmodified	1556.7696	0.76955314	1673	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	3	0			1														14.453	14.453	2	0.019927	7922	DP690-3	67.214	40.167			0.7042	0.7983	NaN	1	0	Median	10629000	7120300	3508600	10624	1673	9892	20801	50466;50467;50468	50467		3	9606
NGQPESEDKYGTTPPQLDADSSYFLYSK	2	0	Unmodified	3136.4149	0.41491935	23	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	1	2	0		1															18.204	18.204	3	0.029959	11557	DP690-2	57.688	32.856		+	NaN	NaN	NaN	0	0	Median	1547000	1547000	0	10625	23	9893	20802	50469	50469		1	
NGQVVEPDKDLK	2	0	Unmodified	1340.6936	0.69359423	2337	Q9UGR2	ZC3H7B	Zinc finger CCCH domain-containing protein 7B	yes	yes	0	0	1	11	0											1						10.941	10.941	2	0.026781	3498	DP690-11	110.38	77.153			NaN	NaN	NaN	0	0	Median	5799800	0	5799800	10626	2337	9894	20803	50470	50470		1	9606
NGSCGVSYIAQEPGNYEVSIK	1	0	Unmodified	2271.0478	0.047761414	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							17.492	17.492	2	1.4091E-29	13148	DP690-10	268.92	194.27			0.83514	1.0291	NaN	1	0	Median	52718000	34844000	17873000	10627	250	9895	20804	50471;50472;50473;50474	50471		4	9606
NGSEADIDEGLYSR	0	1	Unmodified	1524.6692	0.66922997	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														15.179	15.179	2	1.7066E-05	8835	DP690-3	158.06	131.09			0.98423	1.1302	NaN	1	0	Median	16296000	8281800	8014000	10628	561	9896	20805	50475;50476;50477;50478;50479;50480	50475		6	9606
NGSLTNHFSFEK	1	0	Unmodified	1379.647	0.64697839	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			2														14.132	14.132	2;3	0.0021533	7519	DP690-3	133.42	79.003			0.87972	0.92977	NaN	1	0	Median	48677000	20916000	27762000	10629	559	9897	20806;20807	50481;50482;50483;50484;50485	50484		5	9606
NGSVVAMTGDGVNDAVALK	1	0	Oxidation (M)	1832.8938	0.89382695	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	1	0	11	0											2						15.636	15.636	2	0.00013159	10367	DP690-11	135.81	107.38			NaN	NaN	NaN	0	0	Median	7544500	7544500	0	10630	1068	9898	20808;20809	50486;50487	50486	1662	2	9606
NGTLPWLRPDSK	1	1	Unmodified	1382.7306	0.73064844	634	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	1	5	0					1												15.865	15.865	3	0.0013046	9057	DP690-5	94.538	81.302			0.70509	0.7559	NaN	1	0	Median	59674000	27931000	31743000	10631	634	9899	20810	50488;50489	50489		2	9606
NGTQVHGTITGVDVSMNTHLK	1	0	Oxidation (M)	2224.0906	0.090629281	979	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	1	0	16	0																1	12.979	12.979	3	9.3747E-16	5903	DP690-16	176.44	155.17			0.94148	1.0897	NaN	1	0	Median	28769000	13313000	15456000	10632	979	9900	20811	50490;50491;50492;50493	50491	1496	4	9606
NGVQAMVEFDSVQSAQR	0	1	Oxidation (M)	1880.8687	0.86867484	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	1	0	12	0												1					15.503	15.503	2	1.4488E-32	9692	DP690-12	300.27	278.2			0.80799	0.95946	NaN	1	0	Median	55522000	31886000	23636000	10633	494	9901	20812	50494;50495;50496;50497	50495	625	4	9606
NHDEESLECLCR	0	1	Unmodified	1560.6297	0.62969012	1111	Q04637;O43432	EIF4G1;EIF4G3	Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3	yes	no	0	0	0	10	0										2							13.572	13.572	2;3	0.00032817	7447	DP690-10	163.88	154.98			0.91818	1.1452	NaN	1	0	Median	64990000	12041000	52949000	10634	1111	9902	20813;20814	50498;50499;50500;50501;50502;50503	50499		6	9606
NHDHQEIAVPVANLK	1	0	Unmodified	1683.8693	0.86926718	267	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	0	0	15.8	0.433															1	3	13.511	13.511	2;3	3.769E-10	6539	DP690-16	206.69	168.97			0.83724	0.84237	8.0603	4	0	Linear	1272500000	676000000	596470000	10635	267	9903	20815;20816;20817;20818	50504;50505;50506;50507;50508;50509;50510;50511;50512;50513	50510		10	9606
NHEEEMKDLR	1	1	Unmodified	1299.5877	0.58774895	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	1	0	1																10.43	10.43	3	0.0038819	2328	DP690-1	126.19	86.409		+	NaN	NaN	NaN	0	0	Median	31865000	31865000	0	10636	42	9904	20819	50514	50514		1	9606
NHEEEMLALR	0	1	Oxidation (M)	1256.5819	0.58193529	40;50	CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8	KRT16	Keratin, type I cytoskeletal 16	no	no	0	1	0	16	0																1	11.776	11.776	2	0.026787	4371	DP690-16	91.069	54.512		+	NaN	NaN	NaN	0	0	Median	16399000	16399000	0	10637	40;50	9905	20820	50515;50516	50516	45	2	9606
NHEEEMNALR	0	1	Unmodified	1241.5459	0.54588413	29;45	CON__P02533;P02533;CON__Q04695;Q04695;CON__Q9QWL7	KRT14;KRT17	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17	no	no	0	0	0	1	0	1																10.965	10.965	2	0.00023233	2919	DP690-1	154.12	103.99		+	NaN	NaN	NaN	0	0	Median	1684600	1684600	0	10638	29;45	9906	20821	50517;50518	50517		2	9606
NHFAEIETELQAELVR	0	1	Unmodified	1897.9534	0.95339074	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										1							20.376	20.376	3	1.9815E-07	17300	DP690-10	153.22	105.6			0.70904	0.87678	NaN	1	0	Median	114000000	58314000	55686000	10639	311	9907	20822	50519;50520	50519		2	9606
NHFYQFGEIR	0	1	Unmodified	1309.6204	0.62036971	2242	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	0	0	13	0													2				15.192	15.192	2;3	8.6666E-05	9016	DP690-13	162.49	135.82			0.91018	1.0975	7.3994	2	0	Median	145280000	74591000	70693000	10640	2242	9908	20823;20824	50521;50522;50523	50522		3	9606
NHIILQENAQHATR	0	1	Unmodified	1643.8492	0.84920044	1464	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	8	4				1								1					10.401	10.401	3	1.0709E-05	2719	DP690-12	167.03	148.2			0.91774	1.0577	15.529	2	0	Median	151880000	88125000	63753000	10641	1464	9909	20825;20826	50524;50525;50526;50527	50524		4	9606
NHILPPMDHSTISLQMGTNK	1	0	2 Oxidation (M)	2265.0882	0.08818644	1934	Q99439	CNN2	Calponin-2	yes	yes	0	2	0	6	0						2											13.053	13.053	3;4	0.0035869	5723	DP690-6	62.589	48.152			0.8022	0.91591	2.3186	2	0	Median	18092000	9364300	8727900	10642	1934	9910	20827;20828	50528;50529;50530;50531	50528	2464;2465	4	9606
NHKEEMSQLTGQNSGDVNVEINVAPGK	2	0	Oxidation (M)	2910.3778	0.37776276	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	6.5	2.5				1					1								13.94	13.94	4	0.001935	7160	DP690-4	73.649	54.626		+	NaN	NaN	NaN	0	0	Median	19010000	19010000	0	10643	667	9911	20829;20830	50532;50533;50534	50533	938	3	9606
NHMDITTPPLPPVAPEVLR	0	1	Unmodified	2096.1088	0.10884553	2271	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	11	0											1						18.993	18.993	3	0.062592	15150	DP690-11	52.498	16.372			NaN	NaN	NaN	0	0	Median	5083900	5083900	0	10644	2271	9912	20831	50535	50535		1	9606
NHQNLLDSLEQYVK	1	0	Unmodified	1699.8529	0.85294842	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	2	0		1															20.069	20.069	2	0.039162	13618	DP690-2	87.713	36.437			NaN	NaN	NaN	0	0	Median	1204600	0	1204600	10645	1803	9913	20832	50536	50536		1	9606
NHQSAAEYNIFEGMELR	0	1	Oxidation (M)	2023.9058	0.90578862	1260	Q14195	DPYSL3	Dihydropyrimidinase-related protein 3	yes	yes	0	1	0	4	0				1													16.455	16.455	3	0.076661	10499	DP690-4	59.9	36.915			NaN	NaN	NaN	0	0	Median	13970000	0	13970000	10646	1260	9914	20833	50537	50537		1	9606
NHSGGGGGGGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSR	0	1	Unmodified	3639.4722	0.47217829	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	13	0													1				9.7857	9.7857	6	0.073048	2103	DP690-13	9.6118	4.4524			NaN	NaN	NaN	0	0	Median	932310	932310	0	10647	283	9915	20834	50538	50538		1	9606
NHTLALTETGSVFAFGENK	1	0	Unmodified	2035.0011	0.0010692176	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	10.7	3.35				1					1			2	1	1			18.203	18.203	2;3	2.3331999999999998E-132	13428	DP690-12	530.03	476.03			0.9288	1.0304	12.772	6	0	Median	1490999999.9999998	757110000	733840000	10648	2298	9916	20835;20836;20837;20838;20839;20840	50539;50540;50541;50542;50543;50544;50545;50546;50547;50548;50549;50550;50551;50552;50553;50554;50555;50556;50557;50558;50559;50560;50561	50543		23	9606
NIAFFSTNCVEGTAR	0	1	Unmodified	1685.7832	0.78315429	379	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	11	0											3						18.195	18.195	2	8.4951E-16	14014	DP690-11	233.13	188.59			0.91611	1.099	NaN	1	0	Median	60723000	29424000	31299000	10649	379	9917	20841;20842;20843	50562;50563;50564;50565;50566	50563		5	9606
NIAIEFLTLENEIFR	0	1	Unmodified	1820.9672	0.96724989	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	10	0										3							26.521	26.521	2	0.0012277	24783	DP690-10	136.27	98.247			NaN	NaN	NaN	0	0	Median	2624600	1292300	1332300	10650	2215	9918	20844;20845;20846	50567;50568;50569;50570	50567		4	9606
NIANPTAMLLSASNMLR	0	1	2 Oxidation (M)	1847.9234	0.92335294	193	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	2	0	6	0						1											19.052	19.052	2	0.016239	13072	DP690-6	69.314	50.256			0.56573	0.6421	NaN	1	0	Median	4328100	2940400	1387800	10651	193	9919	20847	50571;50572;50573;50574	50572	204;205	4	9606
NIAVETDVR	0	1	Unmodified	1015.5298	0.52982336	2018	Q9BVC5	C2orf49	Ashwin	yes	yes	0	0	0	15	0															1		13.108	13.108	2	0.051487	6189	DP690-15	93.143	37.117			NaN	NaN	NaN	0	0	Median	0	0	0	10652	2018	9920	20848	50575	50575		1	9606
NIDCYSTDFCVR	0	1	Unmodified	1548.6337	0.63371286	1900	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	9.5	0.5									1	1							16.986	16.986	2	4.4987E-05	12373	DP690-10	174.86	165.65			0.85861	1.0721	11.768	2	0	Median	80219000	50423000	29795000	10653	1900	9921	20849;20850	50576;50577;50578;50579;50580;50581;50582;50583	50576		8	9606
NIDDGTSDRPYSHALVAGIDR	0	2	Unmodified	2271.088	0.087986745	950	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	1	16	0																2	15	15	3;4	0.00022187	8559	DP690-16	99.011	74.711			0.83548	0.88271	0.22729	2	0	Median	173730000	93698000	80029000	10654	950	9922	20851;20852	50584;50585;50586;50587;50588;50589	50588		6	9606
NIEDVIAQGIGK	1	0	Unmodified	1255.6772	0.67721588	384	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	12	4								1								1	19.609	19.609	2	5.7736E-05	13160	DP690-8	129.16	82.694			0.98274	1.0881	6.7522	2	0	Median	184860000	91787000	93068000	10655	384	9923	20853;20854	50590;50591;50592;50593;50594;50595;50596;50597	50595		8	9606
NIEELQQQNQR	0	1	Unmodified	1398.6852	0.68515481	475	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	9.33	0.471									2	1							12.347	12.347	2	1.8252E-11	5597	DP690-10	191.85	131.02			NaN	NaN	NaN	0	0	Median	24315000	24315000	0	10656	475	9924	20855;20856;20857	50598;50599;50600;50601	50598		4	9606
NIEIDSPYEISR	0	1	Unmodified	1434.6991	0.69907354	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												1					17.243	17.243	2	4.0108E-05	12111	DP690-12	184.36	149.18			0.73752	0.81407	NaN	1	0	Median	309080000	187710000	121360000	10657	375	9925	20858	50602;50603;50604;50605	50602		4	9606
NIELICQENEGENDPVLQR	0	1	Unmodified	2269.0645	0.06447411	1345	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	15	0															1		17.719	17.719	2	5.7589E-23	12320	DP690-15	226.59	201.63			0.76583	0.88854	NaN	1	0	Median	5235900	2739400	2496400	10658	1345	9926	20859	50606;50607;50608;50609	50607		4	9606
NIEMTQEDVR	0	1	Oxidation (M)	1249.5609	0.5608655	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	7	3.56		1							1	1							11.226	11.226	2	0.0020514	3538	DP690-9	107.21	73.117			0.86152	1.0513	6.8732	3	0	Plateau	172150000	96224000	75924000	10659	269	9927	20860;20861;20862	50610;50611;50612;50613;50614;50615;50616;50617;50618;50619;50620	50616	277	11	9606
NIEVVELLLDK	1	0	Unmodified	1283.7337	0.73366813	2387	Q9ULH0	KIDINS220	Kinase D-interacting substrate of 220 kDa	yes	yes	0	0	0	9	0									1								22.309	22.309	2	0.0041628	17563	DP690-9	89.827	67.834			0.74754	0.92053	NaN	1	0	Median	3196400	1784300	1412100	10660	2387	9928	20863	50621;50622;50623	50622		3	9606
NIFAILQSVK	1	0	Unmodified	1131.6652	0.66519463	1484	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	12	0												1					21.766	21.766	2	0.00053976	18052	DP690-12	117.53	36.001			0.80977	0.96438	NaN	1	0	Median	41429000	22764000	18665000	10661	1484	9929	20864	50624;50625;50626;50627	50627		4	9606
NIFIECTGTDFTK	1	0	Unmodified	1544.7181	0.71809442	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	9.67	4.03				1								1	1				18.243	18.243	2	1.24E-07	13442	DP690-12	196.11	159.53			0.89845	0.91843	11.148	2	0	Median	1398700000	688110000	710570000	10662	2210	9930	20865;20866;20867	50628;50629;50630;50631;50632;50633;50634;50635;50636;50637	50629		10	9606
NIFLQYASTEVDGER	0	1	Unmodified	1740.8319	0.83187862	274	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	12	0												1					19.794	19.794	2	0.0088836	15574	DP690-12	122.33	80.926			NaN	NaN	NaN	0	0	Median	0	0	0	10663	274	9931	20868	50638	50638		1	9606
NIFPSNLVSAAFR	0	1	Unmodified	1434.7619	0.76194857	1349	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	12	0												1					21.363	21.363	2	4.0725E-05	17563	DP690-12	139.15	98.429			0.7462	0.88679	NaN	1	0	Median	36650000	20916000	15733000	10664	1349	9932	20869	50639;50640;50641;50642;50643;50644;50645	50644		7	9606
NIHESCMSQIGWNR	0	1	Oxidation (M)	1746.7566	0.75662197	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	1	0	4	0				2													12.675	12.675	2;3	1.4101E-05	5412	DP690-4	159.66	131.37			1.1359	1.2762	34.217	2	0	Median	62366000	31860000	30506000	10665	469	9933	20870;20871	50646;50647;50648;50649;50650;50651;50652;50653;50654	50647	560	9	9606
NIHESCMSQIGWNR	0	1	Unmodified	1730.7617	0.76170734	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	4	0				1													14.434	14.434	3	1.651E-05	7785	DP690-4	155.14	133.59			0.87444	1.0004	NaN	1	0	Median	21668000	10867000	10801000	10666	469	9933	20872	50655;50656;50657;50658	50655		4	9606
NIHHHQILAINR	0	1	Unmodified	1464.8062	0.80621342	1658	Q8N5C6	SRBD1	S1 RNA-binding domain-containing protein 1	yes	yes	0	0	0	11	0											1						10.404	10.404	3	0.0052553	2694	DP690-11	97.452	60.514			NaN	NaN	NaN	0	0	Median	35067000	0	35067000	10667	1658	9934	20873	50659	50659		1	9606
NIHVATAHEDLAYSSYVHQYSSGK	1	0	Unmodified	2676.2568	0.25684299	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	4	0				2													14.66	14.66	3;4	6.0063E-16	8022	DP690-4	171.9	152.2			41.49	42.574	NaN	1	0	Median	328730000	8408600	320320000	10668	1784	9935	20874;20875	50660;50661;50662;50663;50664	50661		5	9606
NIHVCLGGLFVPEAYITATR	0	1	Unmodified	2230.1569	0.15685835	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								21.273	21.273	3	0.0003039	16376	DP690-9	90.765	77.182			0.85058	1.0639	NaN	1	0	Median	9482500	5140600	4342000	10669	1264	9936	20876	50665;50666	50665		2	9606
NIIGLLNVFTPQK	1	0	Unmodified	1455.8449	0.84494991	747	P45983	MAPK8	Mitogen-activated protein kinase 8	yes	yes	0	0	0	6	0						1											22.995	22.995	2	0.00014413	17306	DP690-6	143.5	143.5			0.76594	0.8598	NaN	1	0	Median	4319800	2460100	1859700	10670	747	9937	20877	50667;50668;50669;50670;50671;50672	50669		6	9606
NIIGYFEQK	1	0	Unmodified	1110.571	0.5709599	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	8.83	3.44					1	1	1	1					1	1			18.139	18.139	2	0.00051861	12267	DP690-7	149.94	115.22			0.83298	0.88033	30.99	6	0	Median	911500000	507830000	403680000	10671	1989	9938	20878;20879;20880;20881;20882;20883	50673;50674;50675;50676;50677;50678;50679;50680;50681;50682;50683;50684;50685;50686;50687;50688;50689;50690;50691;50692	50689		20	9606
NIIHGSDSVESAEK	1	0	Unmodified	1484.7107	0.71070086	501	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	0	10.7	3.77								2								1	11.225	11.225	2;3	2.3357E-10	3840	DP690-8	212.68	157.6			1.083	1.1167	2.5302	3	0	Plateau	63853000	29480000	34374000	10672	501	9939	20884;20885;20886	50693;50694;50695;50696;50697;50698;50699;50700;50701	50701		9	9606
NIIIALIDR	0	1	Unmodified	1039.639	0.63897988	1916	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	11	0											1						20.678	20.678	2	0.0066456	17469	DP690-11	93.162	65.28			0.85588	1.0493	NaN	1	0	Median	15876000	8641900	7234200	10673	1916	9940	20887	50702;50703;50704;50705	50702		4	9606
NIILEEGKEILVGDVGQTVDDPYATFVK	2	0	Unmodified	3061.5859	0.58594784	572	P23528	CFL1	Cofilin-1	yes	yes	0	0	1	9.4	3.32							1	3								1	22.377	22.377	3	2.7093E-12	15897	DP690-8	155.8	143.31			0.7042	0.78409	11.683	3	0	Median	174710000	96982000	77729000	10674	572	9941	20888;20889;20890;20891;20892	50706;50707;50708;50709;50710;50711;50712;50713;50714;50715;50716;50717;50718;50719;50720;50721;50722;50723	50718		18	9606
NIIQPPSCVLHYYNVPLCVTEETFTK	1	0	Unmodified	3121.5253	0.52527862	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												1					21.355	21.355	3	0.02096	17579	DP690-12	58.191	33.546			NaN	NaN	NaN	0	0	Median	7961000	7961000	0	10675	1750	9942	20893	50724;50725	50725		2	9606
NIIQQAIDAGEVPSYNAFVK	1	0	Unmodified	2176.1164	0.11643333	1764	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	yes	yes	0	0	0	6	0						1											21.87	21.87	2	6.3217E-05	16121	DP690-6	130.66	82.429			NaN	NaN	NaN	0	0	Median	1155200	0	1155200	10676	1764	9943	20894	50726;50727	50726		2	9606
NILDSKPTANK	2	0	Unmodified	1199.651	0.65100113	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	1	13	0													1				10.835	10.835	2	0.0001494	3197	DP690-13	180.09	117.54			0.78534	0.87752	NaN	1	0	Median	83352000	47593000	35760000	10677	2395	9944	20895	50728;50729;50730;50731	50730		4	9606
NILEESLCELVAK	1	0	Unmodified	1516.7807	0.78069468	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							22.39	22.39	2	6.4951E-05	17602	DP690-9	170.89	118.16			0.86568	1.06	0.21941	2	0	Median	161350000	85691000	75659000	10678	1046	9945	20896;20897	50732;50733;50734;50735;50736;50737;50738;50739;50740;50741;50742	50742		11	9606
NILETLLQMK	1	0	Oxidation (M)	1217.669	0.66895938	1052	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	1	0	14	0														1			21.424	21.424	2	0.011004	17442	DP690-14	88.37	58.897			0.57913	0.68597	NaN	1	0	Median	12237000	5524800	6712200	10679	1052	9946	20898	50743	50743	1649	1	9606
NILETLLQMK	1	0	Unmodified	1201.674	0.67404476	1052	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	14	0														1			23.354	23.354	2	0.00066483	19772	DP690-14	117.89	42.846			0.93563	1.1117	NaN	1	0	Median	15611000	7521800	8089700	10680	1052	9946	20899	50744;50745;50746;50747	50746		4	9606
NILFVITKPDVYK	2	0	Unmodified	1548.8916	0.89156576	59	E9PAV3;Q9BZK3	NACA;NACAP1	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Putative nascent polypeptide-associated complex subunit alpha-like protein	yes	no	0	0	1	14	0														2			18.333	18.333	2;3	0.00093588	13452	DP690-14	112.84	96.271			1.1351	1.272	57.81	2	0	Median	111220000	52193000	59024000	10681	59	9947	20900;20901	50748;50749;50750;50751;50752	50752		5	9606
NILLTIGSYK	1	0	Unmodified	1120.6492	0.64921022	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															18.729	18.729	2	9.5668E-05	12129	DP690-2	145.72	145.72			0.97761	0.98212	NaN	1	0	Median	6838900	3273400	3565600	10682	602	9948	20902	50753;50754	50753		2	9606
NILLTNEQLESAR	0	1	Unmodified	1499.7944	0.79437091	2145	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	14	0														1			16.72	16.72	2	0.00016299	11292	DP690-14	120.77	90.158			0.68472	0.82437	NaN	1	0	Median	71668000	39587000	32081000	10683	2145	9949	20903	50755	50755		1	9606
NILNELFQR	0	1	Unmodified	1145.6193	0.61930707	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	2	0		1															21.328	21.328	2	0.0051976	14945	DP690-2	98.997	60.221			1.1878	1.228	NaN	1	0	Median	4201500	2146900	2054600	10684	283	9950	20904	50756;50757;50758;50759	50756		4	9606
NILSVVGTDALKK	2	0	Unmodified	1356.7977	0.79766537	166	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	1	12	0												1					16.878	16.878	2	0.0050514	11692	DP690-12	91.658	63.834			0.75861	0.88695	NaN	1	0	Median	25763000	14689000	11074000	10685	166	9951	20905	50760;50761	50761		2	9606
NIMPLSAAMFQSER	0	1	Unmodified	1593.7643	0.76433311	553	P21817	RYR1	Ryanodine receptor 1	yes	yes	0	0	0	4	0				1													23.798	23.798	2	0.02014	18734	DP690-4	69.276	44.81			0.74724	0.83599	NaN	1	0	Median	1089200	577270	511980	10686	553	9952	20906	50762	50762		1	9606
NIMPLSAAMFQSERK	1	1	2 Oxidation (M)	1753.8491	0.84912537	553	P21817	RYR1	Ryanodine receptor 1	yes	yes	0	2	1	2	0		1															15.776	15.776	2	0.0086993	8708	DP690-2	68.069	35.122			1.1145	1.0972	NaN	1	0	Median	2899600	1204100	1695500	10687	553	9953	20907	50763;50764	50764	716;717	2	9606
NINDVDTALSFYHMAGASLDK	1	0	Oxidation (M)	2297.0634	0.063411478	1968	Q9BPX6	MICU1	Calcium uptake protein 1, mitochondrial	yes	yes	0	1	0	13	0													1				19.861	19.861	3	0.00073245	15279	DP690-13	80.277	67.102			0.82174	0.95398	NaN	1	0	Median	20480000	10439000	10041000	10688	1968	9954	20908	50765;50766;50767	50767	2514	3	9606
NINENFGPNTEMHLVPILATAIQEELEK	1	0	Oxidation (M)	3179.5809	0.58087924	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	1	0	5	0					2												24.063	24.063	3	1.2059E-34	18687	DP690-5	205.8	188.88			0.76518	0.76438	30.534	2	0	Median	124090000	74270000	49822000	10689	2385	9955	20909;20910	50768;50769;50770;50771;50772	50770	2813	5	9606
NINENFGPNTEMHLVPILATAIQEELEK	1	0	Unmodified	3163.586	0.58596462	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	5	0					2												24.595	24.595	3	3.2658E-12	19831	DP690-5	153.31	153.31			0.72733	0.72606	NaN	1	0	Median	35960000	20626000	15334000	10690	2385	9955	20911;20912	50773;50774;50775;50776;50777;50778	50774		6	9606
NINIGDISIK	1	0	Unmodified	1085.6081	0.60807369	1775	Q92572	AP3S1	AP-3 complex subunit sigma-1	yes	yes	0	0	0	16	0																1	18.491	18.491	2	0.003121	12896	DP690-16	94.85	47.247			0.90044	1.0529	NaN	1	0	Median	22280000	11566000	10714000	10691	1775	9956	20913	50779;50780	50780		2	9606
NINLIVQK	1	0	Unmodified	940.57057	0.57056597	1152;1013	Q10567;P63010	AP1B1;AP2B1	AP-1 complex subunit beta-1;AP-2 complex subunit beta	no	no	0	0	0	11	0											1						14.825	14.825	2	0.046199	9147	DP690-11	86.472	86.472			0.76026	0.89098	NaN	1	0	Median	130150000	64255000	65896000	10692	1152;1013	9957	20914	50781	50781		0	9606
NIPGITLLNVSK	1	0	Unmodified	1267.75	0.7499869	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	7.25	4.15		1			1				1				1				19.483	19.483	2	4.9501E-05	14666	DP690-13	150.15	93.718			0.88771	0.92638	20.759	4	0	Median	393280000	215170000	178110000	10693	681	9958	20915;20916;20917;20918	50782;50783;50784;50785;50786;50787;50788;50789;50790;50791;50792;50793	50783		12	9606
NIPNGLQEFLDPLCQR	0	1	Unmodified	1912.9465	0.94653123	895	P55196	MLLT4	Afadin	yes	yes	0	0	0	10	0										3							22.56	22.56	2	0.0047568	20156	DP690-10	111.94	70.456			NaN	NaN	NaN	0	0	Median	11142000	11142000	0	10694	895	9959	20919;20920;20921	50794;50795;50796;50797	50794		4	9606
NIPQGLESIQIHLEASAASLR	0	1	Unmodified	2246.2019	0.20189429	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									2								21.17	21.17	3	0.012719	16219	DP690-9	76.704	33.147			NaN	NaN	NaN	0	0	Median	9446800	4669500	4777300	10695	2217	9960	20922;20923	50798;50799;50800	50798		3	9606
NIPQMSFDDTEREPDQTFSLNR	0	2	Oxidation (M)	2655.1871	0.18710844	2072	Q9GZP4	PITHD1	PITH domain-containing protein 1	yes	yes	0	1	1	7	0							1										16.672	16.672	3	0.00062488	10428	DP690-7	77.037	68.081			0.57656	0.59153	NaN	1	0	Median	24369000	15775000	8594000	10696	2072	9961	20924	50801;50802;50803;50804;50805	50803	2595	5	9606
NIQDTSDLDAIAK	1	0	Unmodified	1402.694	0.69398816	2271	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	11	0											1						16.04	16.04	2	0.0066959	10935	DP690-11	107.06	56.449			NaN	NaN	NaN	0	0	Median	26431000	26431000	0	10697	2271	9962	20925	50806;50807	50807		2	9606
NIQNLVQR	0	1	Unmodified	983.55123	0.55122751	2126	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	4	0				1													13.714	13.714	2	0.053184	6785	DP690-4	138.85	68.581			0.85146	0.96666	NaN	1	0	Median	25312000	12760000	12552000	10698	2126	9963	20926	50808	50808		0	9606
NIQVSHQEFSK	1	0	Unmodified	1315.6521	0.65206377	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3.33	0.471			2	1													11.181	11.181	2;3	2.6159E-06	3657	DP690-3	194.12	166.23			0.90036	1.001	5.5749	3	0	Plateau	52646000	28394000	24252000	10699	1739	9964	20927;20928;20929	50809;50810;50811;50812;50813;50814;50815;50816;50817;50818	50814		10	9606
NISELFYYAQK	1	0	Unmodified	1374.682	0.68196691	1615;1614	Q8IXI2;Q8IXI1	RHOT1;RHOT2	Mitochondrial Rho GTPase 1;Mitochondrial Rho GTPase 2	no	no	0	0	0	11.5	0.5											1	1					19.575	19.575	2	0.0046153	15953	DP690-11	88.948	63.822			0.72237	0.87207	6.7825	2	0	Median	68277000	39257000	29020000	10700	1615;1614	9965	20930;20931	50819;50820;50821;50822	50819		4	9606
NISHYEEQLVK	1	0	Unmodified	1358.683	0.68302954	485	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	13	0													2				13.715	13.715	2;3	0.00019891	6957	DP690-13	169.58	127.24			1.0813	1.2524	18.679	2	0	Median	96565000	50641000	45924000	10701	485	9966	20932;20933	50823;50824;50825;50826;50827	50824		5	9606
NITLDDASAPR	0	1	Unmodified	1171.5833	0.5833155	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	3	0			1														14.151	14.151	2	0.0064823	7485	DP690-3	112.36	54.808			NaN	NaN	NaN	0	0	Median	9757200	0	9757200	10702	264	9967	20934	50828;50829	50829		2	9606
NIVEAAAVR	0	1	Unmodified	941.52943	0.52942943	996	P62854;Q5JNZ5	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	yes	no	0	0	0	12	4								1								1	13.182	13.182	2	0.002596	6079	DP690-16	109.48	38.136			1.0142	1.1033	6.5135	2	0	Median	351640000	174780000	176860000	10703	996	9968	20935;20936	50830;50831;50832;50833;50834;50835;50836;50837	50830		8	9606
NIVLSGGSTMFR	0	1	Oxidation (M)	1296.6496	0.64962092	940	P61158	ACTR3	Actin-related protein 3	yes	yes	0	1	0	13	0													1				15.625	15.625	2	0.01135	9603	DP690-13	80.916	41.663			1.02	1.2213	NaN	1	0	Median	94071000	47414000	46658000	10704	940	9969	20937	50838;50839;50840	50839	1459	3	9606
NIVLSGGSTMFR	0	1	Unmodified	1280.6547	0.6547063	940	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	13	0													1				17.575	17.575	2	0.00013824	12253	DP690-13	123.86	71.608			0.82998	1.004	NaN	1	0	Median	65502000	35467000	30036000	10705	940	9969	20938	50841;50842;50843;50844;50845	50842		5	9606
NIVSLLLSMLGHDEDNTR	0	1	Oxidation (M)	2042.0103	0.010253695	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	1	0	10	0										2							23.406	23.406	3	1.826E-06	21389	DP690-10	129.05	129.05			0.6465	0.80908	NaN	1	0	Median	20734000	9307100	11427000	10706	1782	9970	20939;20940	50846;50847;50848;50849;50850	50848	2347	5	9606
NIVSLLLSMLGHDEDNTR	0	1	Unmodified	2026.0153	0.015339073	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							25.8	25.8	3	0.000949	24048	DP690-10	76.586	76.586			0.97592	1.1393	NaN	1	0	Median	1518600	681300	837270	10707	1782	9970	20941	50851;50852	50851		2	9606
NIWDSEEYASVLQLLR	0	1	Unmodified	1934.9738	0.97379183	2311	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	11	0											1						24.685	24.685	2	0.0045749	22518	DP690-11	134.77	81.242			NaN	NaN	NaN	0	0	Median	0	0	0	10708	2311	9971	20942	50853	50853		1	9606
NIYSEELR	0	1	Unmodified	1022.5033	0.50327426	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11	0											1						14.276	14.276	2	0.054887	8321	DP690-11	109.01	77.709			NaN	NaN	NaN	0	0	Median	0	0	0	10709	359	9972	20943	50854	50854		1	9606
NIYSEELRETK	1	1	Unmodified	1380.6885	0.68850885	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	11.5	0.5											1	1					13.215	13.215	2	0.018303	6405	DP690-12	125.97	72.475			0.85592	1.0165	NaN	1	0	Median	100790000	41030000	59758000	10710	359	9973	20944;20945	50855;50856;50857	50856		3	9606
NIYVLQELDNPGAK	1	0	Unmodified	1572.8148	0.814772	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	8	4				1								1					19.018	19.018	2	2.5798E-09	13520	DP690-4	205.52	178.19			1.5723	1.7685	86.068	2	0	Median	125380000	55070000	70310000	10711	479	9974	20946;20947	50858;50859;50860;50861;50862;50863;50864;50865	50863		8	9606
NKDQGTYEDYVEGLR	1	1	Unmodified	1785.817	0.81695684	925	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	1	13.3	3.77								1								2	16.097	16.097	2;3	6.2085E-15	9995	DP690-16	241.31	213.88			0.7954	0.83241	16.597	3	0	Plateau	157650000	83793000	73855000	10712	925	9975	20948;20949;20950	50866;50867;50868;50869;50870;50871;50872;50873;50874;50875;50876	50867		11	9606
NKEDQYDHLDAADMTK	2	0	Oxidation (M)	1908.816	0.81597056	654	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	1	1	3	0			1														11.238	11.238	3	0.0060735	3837	DP690-3	67.326	67.326			1.6079	1.7483	NaN	1	0	Median	11669000	4848500	6820000	10713	654	9976	20951	50877;50878	50878	923	2	9606
NKENSAPLEENTTGKNEAK	3	0	Unmodified	2072.9974	0.9974404	860	P52739	ZNF131	Zinc finger protein 131	yes	yes	0	0	2	11	0											1						10.28	10.28	3	0.0029451	2489	DP690-11	127.37	85.51			NaN	NaN	NaN	0	0	Median	0	0	0	10714	860	9977	20952	50879	50879		1	9606
NKEPPAPAQQLQPQPVAVQGPEPAR	1	1	Unmodified	2646.3878	0.38779758	2164	Q9HC07	TMEM165	Transmembrane protein 165	yes	yes	0	0	1	10	0										1							14.035	14.035	3	3.9002E-23	8101	DP690-10	189.52	167.12			0.51988	0.64718	NaN	1	0	Median	36422000	21705000	14717000	10715	2164	9978	20953	50880;50881;50882	50881		3	9606
NKETLGSEAVSSNVIDYGHASK	2	0	Unmodified	2305.1186	0.11861817	1299	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	1	10	0										1							14.09	14.09	3	8.5983E-05	8181	DP690-10	115.36	115.36			0.56494	0.7273	NaN	1	0	Median	52669000	28340000	24330000	10716	1299	9979	20954	50883;50884;50885	50883		3	9606
NKHEAMITDLEER	1	1	Oxidation (M)	1600.7515	0.75151981	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	2	0		3															11.849	11.849	3	0.00013221	3669	DP690-2	111.72	82.173			1.1205	1.103	5.6966	3	0	Median	57161000	27776000	29385000	10717	668	9980	20955;20956;20957	50886;50887;50888;50889;50890;50891	50890	949	6	9606
NKHEAMITDLEER	1	1	Unmodified	1584.7566	0.75660519	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		1															12.824	12.824	3	0.00066708	5102	DP690-2	91.812	74.026			1.3174	1.2968	NaN	1	0	Median	18396000	7548800	10847000	10718	668	9980	20958	50892;50893;50894	50892		3	9606
NKHEMVVYEAASAIVNLPGCSAK	2	0	Oxidation (M)	2503.2199	0.21992889	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	1	1	3	0			1														17.401	17.401	4	0.0018528	11874	DP690-3	94.234	65.076			NaN	NaN	NaN	0	0	Median	11625000	0	11625000	10719	2515	9981	20959	50895;50896	50895	2954	2	9606
NKLDHYAIIK	2	0	Unmodified	1213.6819	0.68190733	988	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	15.5	0.5															1	1	12.137	12.137	3	0.045599	4799	DP690-16	53.597	33.39			0.84334	0.95942	3.5448	2	0	Median	185680000	99139000	86540000	10720	988	9982	20960;20961	50897;50898	50898		1	9606
NKLEGLEDALQK	2	0	Unmodified	1356.7249	0.72489436	31;368	CON__P02538;P02538;CON__P48668;P48668;P04259	KRT6A;KRT6C;KRT6B	Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6B	no	no	0	0	1	16	0																1	15.474	15.474	2	0.00074684	9123	DP690-16	152.67	83.825		+	NaN	NaN	NaN	0	0	Median	18790000	18790000	0	10721	31;368	9983	20962	50899	50899		1	9606
NKLNDLEDALQQAK	2	0	Unmodified	1598.8264	0.82639932	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	4.44	3.17	2	2		2				1	2								17.521	17.521	2;3	9.4167E-108	11755	DP690-4	318.57	214.14		+	NaN	NaN	NaN	0	0	Median	80842000	80842000	0	10722	369	9984	20963;20964;20965;20966;20967;20968;20969;20970;20971	50900;50901;50902;50903;50904;50905;50906;50907;50908;50909;50910;50911;50912;50913;50914	50908		15	9606
NKLNDLEDALQQAKEDLAR	2	1	Unmodified	2183.1182	0.11822424	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	2	6.25	3.11	1						1	1	1								20.32	20.32	3	3.4751E-38	11973	DP690-1	258.13	213.59		+	NaN	NaN	NaN	0	0	Median	63896000	63896000	0	10723	369	9985	20972;20973;20974;20975	50915;50916;50917;50918;50919;50920;50921;50922	50916		8	9606
NKLNDLEEALQQAK	2	0	Unmodified	1612.842	0.84204938	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	3	1.41	1			2													17.94	17.94	2;3	1.0291E-33	12294	DP690-4	229	167.84		+	NaN	NaN	NaN	0	0	Median	10948000	10948000	0	10724	44	9986	20976;20977;20978	50923;50924;50925;50926	50925		4	9606
NKLNDLEEALQQAKEDLAR	2	1	Unmodified	2197.1339	0.1338743	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	2	1.5	0.5	1	1															20.515	20.515	3	1.825E-38	12145	DP690-1	237.46	194.88		+	NaN	NaN	NaN	0	0	Median	5178000	5178000	0	10725	44	9987	20979;20980	50927;50928;50929	50927		3	9606
NKNPAPPIDAVEQILPTLVR	1	1	Unmodified	2184.2267	0.22665248	850	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	1	12	0												1					21.676	21.676	3	5.7047E-07	17847	DP690-12	137.99	126.98			0.58496	0.75504	NaN	1	0	Median	29604000	18869000	10735000	10726	850	9988	20981	50930;50931;50932;50933	50930		4	9606
NKPFFDICTSR	1	1	Unmodified	1383.6605	0.66051996	232	O60942	RNGTT	mRNA-capping enzyme;Polynucleotide 5'-triphosphatase;mRNA guanylyltransferase	yes	yes	0	0	1	12	0												1					15.54	15.54	2	0.070554	9807	DP690-12	73.233	56.98			0.7381	0.95591	NaN	1	0	Median	27181000	14640000	12541000	10727	232	9989	20982	50934	50934		1	9606
NKPGPNIESGNEDDDASFK	2	0	Unmodified	2032.8974	0.89739201	228	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	1	10	0										1							12.702	12.702	3	1.3531E-10	6164	DP690-10	159.26	150.02			0.79449	0.95445	NaN	1	0	Median	132370000	69379000	62992000	10728	228	9990	20983	50935;50936;50937;50938	50936		4	9606
NKPILHTDLDVK	2	0	Unmodified	1391.7773	0.77726428	10	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	1	10	0										1							12.118	12.118	3	0.018649	5313	DP690-10	61.419	36.723			0.72564	0.87889	NaN	1	0	Median	118950000	66334000	52611000	10729	10	9991	20984	50939;50940	50939		2	9606
NKPIVNIDPQTAELNHLK	2	0	Unmodified	2043.1113	0.11128837	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	1	9.5	0.5									1	1							15.166	15.166	3	7.6236E-12	9801	DP690-10	174.4	161.15			0.71899	0.8294	20.983	2	0	Median	407840000	240590000	167250000	10730	311	9992	20985;20986	50941;50942;50943	50942		3	9606
NKPKPAAEPSNGIPDSSK	3	0	Unmodified	1835.9377	0.93774068	1588	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	2	12	0												1					10.224	10.224	3	2.9269E-11	2462	DP690-12	164.82	164.82			0.74891	0.81117	NaN	1	0	Median	38014000	22210000	15805000	10731	1588	9993	20987	50944;50945	50944		2	9606
NKPLSDMELNSSSEDSK	2	0	Oxidation (M)	1895.8419	0.84185096	129	O15014	ZNF609	Zinc finger protein 609	yes	yes	0	1	1	10	0										1							10.924	10.924	3	0.062013	3476	DP690-10	50.053	34.779			1.3631	1.645	NaN	1	0	Median	25057000	9188600	15868000	10732	129	9994	20988	50946	50946		0	9606
NKPQVPVPGSDISETQVER	1	1	Unmodified	2079.0596	0.059646729	1826	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	1	14	0														1			14.212	14.212	3	1.1946E-06	7857	DP690-14	132.62	97.088			0.61955	0.77105	NaN	1	0	Median	45031000	28756000	16275000	10733	1826	9995	20989	50947;50948;50949;50950	50950		4	9606
NKTEYEEAQDAIVK	2	0	Unmodified	1636.7944	0.79443049	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	1	11	0											2						13.713	13.713	2;3	3.9222E-06	7429	DP690-11	192.65	139.05			0.91228	1.0577	NaN	1	0	Median	77024000	39625000	37399000	10734	736	9996	20990;20991	50951;50952;50953;50954;50955	50951		5	9606
NKVDTYVEFPLR	1	1	Unmodified	1479.7722	0.7721789	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	1	12	0												2					16.608	16.608	2;3	0.00026904	11236	DP690-12	172.88	143.11			0.88435	1.0819	4.2228	2	0	Median	117240000	57151000	60091000	10735	2521	9997	20992;20993	50956;50957;50958;50959;50960;50961;50962	50957		7	9606
NKYECEIQASR	1	1	Unmodified	1396.6405	0.6405128	1424	Q5PSV4	BRMS1L	Breast cancer metastasis-suppressor 1-like protein	yes	yes	0	0	1	14	0														1			11.016	11.016	3	0.0060965	3538	DP690-14	105.03	67.375			NaN	NaN	NaN	0	0	Median	7008100	0	7008100	10736	1424	9998	20994	50963;50964	50964		2	9606
NKYEDEINK	2	0	Unmodified	1151.5459	0.54586736	369;38;43;31;368	P04264;CON__P04264;CON__P02538;P02538;CON__P48668;P48668;CON__Q8VED5;CON__P05787;P05787;CON__H-INV:HIT000292931;CON__H-INV:HIT000016045;CON__Q9H552;CON__P13647;P13647;P04259	KRT1;KRT6A;KRT6C;KRT8;KRT5;KRT6B	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6B	no	no	0	0	1	1.5	0.5	1	1															10.637	10.637	2	2.9156E-11	2593	DP690-1	193.1	121.72		+	NaN	NaN	NaN	0	0	Median	11285000	11285000	0	10737	369;31;38;43;368	9999	20995;20996	50965;50966	50965		2	9606
NKYEDEINKR	2	1	Unmodified	1307.647	0.64697839	369;38;43;31;368	P04264;CON__P04264;CON__P02538;P02538;CON__P48668;P48668;CON__Q8VED5;CON__P05787;P05787;CON__H-INV:HIT000016045;CON__P13647;P13647;P04259	KRT1;KRT6A;KRT6C;KRT8;KRT5;KRT6B	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6B	no	no	0	0	2	4	4.12	3	2	1							1		1					10.51	10.51	3	3.4223E-06	2800	DP690-3	182.16	138.74		+	0.24037	0.26528	NaN	1	0	Median	263730000	232970000	30762000	10738	369;31;38;43;368	10000	20997;20998;20999;21000;21001;21002;21003;21004	50967;50968;50969;50970;50971;50972;50973;50974;50975	50974		9	9606
NLAAAAVEEQYSCDYGSGR	0	1	Unmodified	2059.8905	0.89053249	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	5	1				1		1											11.045	11.045	2	0.01731	3482	DP690-4	90.653	30.589			NaN	NaN	NaN	0	0	Median	11986000	11986000	0	10739	1070	10001	21005;21006	50976;50977	50976		2	9606
NLAANDLSPSR	0	1	Unmodified	1156.5836	0.58364985	1833	Q96CB9	NSUN4	5-methylcytosine rRNA methyltransferase NSUN4	yes	yes	0	0	0	14	0														1			13.12	13.12	2	7.9109E-05	6263	DP690-14	131.12	85.436			0.94378	1.1384	NaN	1	0	Median	63728000	27905000	35823000	10740	1833	10002	21007	50978;50979;50980;50981;50982	50979		5	9606
NLAENISR	0	1	Unmodified	915.47739	0.47739386	467	P11216;P06737	PYGB;PYGL	Glycogen phosphorylase, brain form;Glycogen phosphorylase, liver form	no	no	0	0	0	3	0			1														12.152	12.152	2	0.072822	4898	DP690-3	107.01	40.208			1.1118	1.2788	NaN	1	0	Median	17182000	8340800	8840800	10741	467	10003	21008	50983	50983		0	9606
NLALGGGLLLLLAESR	0	1	Unmodified	1608.9563	0.95629128	147	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	9.67	0.471									1	2							24.929	24.929	2	5.5621E-06	20473	DP690-9	132.79	132.79			0.95624	1.1831	NaN	1	0	Median	2562900	1423200	1139700	10742	147	10004	21009;21010;21011	50984;50985;50986;50987;50988;50989	50988		6	9606
NLAMEATYINHNFSQQCLR	0	1	Oxidation (M)	2325.063	0.063034322	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	1	0	9.33	3.77				1								2					17.306	17.306	2;3	4.535899999999999E-21	12305	DP690-12	216.27	191.4			1.0807	1.2468	6.2269	2	0	Median	150530000	76971000	73561000	10743	154	10005	21012;21013;21014	50990;50991;50992;50993;50994;50995;50996	50994	172	7	9606
NLAMEATYINHNFSQQCLR	0	1	Unmodified	2309.0681	0.0681197	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	12	0												1					17.631	17.631	2	1.995E-17	12679	DP690-12	209.39	183.69			0.85952	1.0467	NaN	1	0	Median	10173000	4471900	5701100	10744	154	10005	21015	50997	50997		1	9606
NLAMGVNLTSMSK	1	0	2 Oxidation (M)	1396.669	0.66903574	472	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	2	0	15	0															1		14.07	14.07	2	7.7661E-05	7555	DP690-15	131.42	101.87			0.75022	0.86561	NaN	1	0	Median	52035000	28145000	23890000	10745	472	10006	21016	50998;50999;51000;51001	51000	574;575	4	9606
NLATTVTEEILEK	1	0	Unmodified	1459.777	0.77698951	176	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	11.5	0.5											1	1					21.295	21.295	2	5.7043E-05	17469	DP690-12	155.53	101.76			0.82498	0.9861	1.3948	2	0	Median	149320000	84716000	64608000	10746	176	10007	21017;21018	51002;51003;51004;51005;51006;51007;51008;51009;51010;51011	51007		10	9606
NLAYDTLPVLIHGNGPTK	1	0	Unmodified	1922.0262	0.026161756	1097	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	11	0											1						18.187	18.187	3	0.047292	13936	DP690-11	29.202	5.0914			1.3063	1.5757	NaN	1	0	Median	49634000	25258000	24376000	10747	1097	10008	21019	51012	51012		1	9606
NLCHFQALGCR	0	1	Unmodified	1374.6285	0.62850833	1407	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	0	0	7	0							1										13.599	13.599	3	0.04883	6613	DP690-7	49.466	37.926			1.5271	1.7053	NaN	1	0	Median	38282000	13730000	24551000	10748	1407	10009	21020	51013	51013		1	9606
NLCSDDTPMVR	0	1	Unmodified	1306.5646	0.56457067	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	8	4				1								1					13.867	13.867	2	0.0011493	7051	DP690-4	105.4	67.31			1.2459	1.4628	39.093	2	0	Median	47968000	22058000	25910000	10749	624	10010	21021;21022	51014;51015;51016;51017	51017		4	9606
NLCSDDTPMVR	0	1	Oxidation (M)	1322.5595	0.55948529	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	1	0	4	0				1													12.627	12.627	2	0.011697	5272	DP690-4	84.213	58.591			1.7366	1.917	NaN	1	0	Median	44735000	14520000	30215000	10750	624	10010	21023	51018;51019;51020;51021;51022	51018	859	5	9606
NLDDGIDDER	0	1	Unmodified	1160.4946	0.49456007	471	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	0	12	0												1					13.645	13.645	2	0.012983	7096	DP690-12	79.489	49.235			0.90984	1.081	NaN	1	0	Median	37019000	17522000	19497000	10751	471	10011	21024	51023	51023		1	9606
NLDDGIDDERLR	0	2	Unmodified	1429.6797	0.67973508	471	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	1	8	4				1								1					14.337	14.337	2	0.0019074	7681	DP690-4	112.11	80.265			0.93568	1.0199	27.672	2	0	Median	23657000	13587000	10070000	10752	471	10012	21025;21026	51024;51025;51026	51025		3	9606
NLDFQDVLDK	1	0	Unmodified	1205.5928	0.59281755	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	12	0												1					19.228	19.228	2	0.0098531	14914	DP690-12	83.869	36.682			0.78312	0.90999	NaN	1	0	Median	106720000	58371000	48354000	10753	2475	10013	21027	51027;51028	51027		2	9606
NLDIERPTYTNLNR	0	2	Unmodified	1717.8747	0.87474649	1032;1521;1977;452;1033	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;Q9BQE3;P68366	TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain	no	no	0	0	1	9.15	4.09			1	2	3	2	1		2			2	4	1	2		15.009	15.009	2;3	1.3739E-14	7964	DP690-5	222.72	182.8			0.97629	1.0473	9.3464	19	0	Median	18150000000	9315200000	8835200000	10754	452;1032;1521;1977;1033	10014	21028;21029;21030;21031;21032;21033;21034;21035;21036;21037;21038;21039;21040;21041;21042;21043;21044;21045;21046;21047	51029;51030;51031;51032;51033;51034;51035;51036;51037;51038;51039;51040;51041;51042;51043;51044;51045;51046;51047;51048;51049;51050;51051;51052;51053;51054;51055;51056;51057;51058;51059;51060;51061;51062;51063;51064;51065;51066;51067;51068;51069;51070;51071;51072;51073;51074;51075;51076;51077;51078;51079;51080;51081;51082;51083;51084;51085;51086;51087;51088	51070		60	9606
NLDLAVLELMQSSVDNTK	1	0	Unmodified	1989.0089	0.0088567119	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.67	0.471									1	2							23.881	23.881	2	1.0528000000000001E-70	19223	DP690-9	364.3	317.24			0.91116	1.1198	30.852	3	0	Plateau	63160000	33494000	29666000	10755	1046	10015	21048;21049;21050	51089;51090;51091;51092;51093;51094;51095;51096;51097;51098;51099;51100;51101	51098		13	9606
NLDLAVLELMQSSVDNTK	1	0	Oxidation (M)	2005.0038	0.003771334	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.6	0.49									2	3							22.212	22.212	2	7.028699999999999E-50	17577	DP690-10	249.82	194.72			0.7951	0.94923	16.448	3	0	Median	93912000	29325000	64588000	10756	1046	10015	21051;21052;21053;21054;21055	51102;51103;51104;51105;51106;51107;51108;51109;51110;51111;51112	51105	1628	11	9606
NLDLDSIIAEVK	1	0	Unmodified	1328.7187	0.71874635	44;43;31;368	P35908;CON__P35908v2;CON__P35908;CON__P02538;P02538;CON__P48668;P48668;CON__Q8VED5;CON__P13647;P13647;P04259	KRT2;KRT6A;KRT6C;KRT5;KRT6B	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6B	no	no	0	0	0	8.5	5.22	1	1	1	1	1		1			1		1	1	1	1	1	22.291	22.291	2	2.3253E-11	19826	DP690-10	186.87	130.61		+	0.34024	0.40793	NaN	1	0	Median	256410000	248750000	7663600	10757	44;31;43;368	10016	21056;21057;21058;21059;21060;21061;21062;21063;21064;21065;21066;21067	51113;51114;51115;51116;51117;51118;51119;51120;51121;51122;51123;51124;51125;51126;51127;51128;51129;51130;51131;51132;51133;51134;51135;51136;51137;51138;51139;51140;51141	51117		29	9606
NLDLDSIIDEVR	0	1	Unmodified	1400.7147	0.7147236	56	CON__Q9R0H5;CON__Q3SY84;Q3SY84	KRT71	Keratin, type II cytoskeletal 71	yes	no	0	0	0	15.3	0.943														1		2	23.037	23.037	2	2.7375E-06	19445	DP690-14	158.79	107.51		+	NaN	NaN	NaN	0	0	Median	2668100	2668100	0	10758	56	10017	21068;21069;21070	51142;51143;51144	51142		3	9606
NLDLSWSELKK	2	0	Unmodified	1331.7085	0.70851601	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	1	10	0										1							17.065	17.065	2	0.0052639	12565	DP690-10	94.409	52.983			0.82659	1.0287	NaN	1	0	Median	83362000	47370000	35992000	10759	1156	10018	21071	51145	51145		1	9606
NLDPLVYLLSK	1	0	Unmodified	1273.7282	0.72818882	1992	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	11	0											1						22.928	22.928	2	0.028731	20487	DP690-11	93.096	43.381			NaN	NaN	NaN	0	0	Median	11724000	0	11724000	10760	1992	10019	21072	51146	51146		1	9606
NLDQEQLSQVLDAMFER	0	1	Oxidation (M)	2050.963	0.96296915	485	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	1	0	13	0													1				20.838	20.838	2	0.0016205	16479	DP690-13	143.64	94.976			NaN	NaN	NaN	0	0	Median	0	0	0	10761	485	10020	21073	51147	51147	604	1	9606
NLDSTTVAIHDEEIYCK	1	0	Unmodified	2006.9255	0.92552101	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	0	15	0															2		15.774	15.774	2;3	1.8607E-12	9727	DP690-15	198.81	166.37			0.81624	0.87665	6.2564	2	0	Median	916170000	492980000	423190000	10762	1354	10021	21074;21075	51148;51149;51150;51151;51152;51153	51152		6	9606
NLDSTTVAVHGEEIYCK	1	0	Unmodified	1934.9044	0.90439164	548	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	15	0															2		14.891	14.891	2;3	1.0992E-17	8601	DP690-15	253.06	231.4			1.0065	1.1702	10.07	2	0	Median	77383000	40484000	36899000	10763	548	10022	21076;21077	51154;51155;51156;51157;51158;51159;51160	51156		7	9606
NLEAVETLGSTSTICSDK	1	0	Unmodified	1923.9095	0.9095366	379	P05023;P13637;P50993;Q13733	ATP1A1;ATP1A3;ATP1A2;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4	yes	no	0	0	0	8	3.56			1							1	1						17.29	17.29	2	3.5578E-22	12601	DP690-11	216.27	197.31			1.1494	1.3883	NaN	1	0	Median	54518000	23356000	31163000	10764	379	10023	21078;21079;21080	51161;51162;51163;51164;51165	51162		5	9606
NLEAYGLDPYSVAAILQQR	0	1	Unmodified	2120.0902	0.090218576	717	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	12	0												1					23.334	23.334	2	2.4331E-13	19835	DP690-12	187.16	161.05			0.66275	0.81427	NaN	1	0	Median	2932400	1709300	1223200	10765	717	10024	21081	51166;51167	51166		2	9606
NLEEAAAAEQGGGCDQVDSSPVPR	0	1	Unmodified	2456.0874	0.087394397	2448	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	11	0											3						15.657	15.657	2	2.0643E-60	10374	DP690-11	256.08	228.12			NaN	NaN	NaN	0	0	Median	18685000	12815000	5869700	10766	2448	10025	21082;21083;21084	51168;51169;51170	51169		3	9606
NLEEEENLGKGEYQESLR	1	1	Unmodified	2135.9971	0.99710605	781	P48681	NES	Nestin	yes	yes	0	0	1	10	0										2							15.356	15.356	2;3	2.1263E-36	10112	DP690-10	292.16	244.88			0.79059	0.94091	3.279	2	0	Median	456570000	238800000	217770000	10767	781	10026	21085;21086	51171;51172;51173;51174;51175;51176;51177	51174		7	9606
NLEEGHSSTVAAHYNELQEVGLEK	1	0	Unmodified	2653.262	0.26198794	162	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	9.33	3.77				1								2					15.486	15.486	3;4	7.076699999999999E-46	9698	DP690-12	240.87	213.35			0.94461	1.1153	4.7717	2	0	Median	149190000	69451000	79742000	10768	162	10027	21087;21088;21089	51178;51179;51180;51181;51182;51183;51184;51185	51178		8	9606
NLEGYVGFANLPNQVYR	0	1	Unmodified	1952.9745	0.97446054	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	13	0													1				20.16	20.16	2	5.9214E-49	15606	DP690-13	341.35	341.35			0.77269	0.93575	NaN	1	0	Median	61463000	37122000	24341000	10769	1351	10028	21090	51186;51187;51188;51189	51186		4	9606
NLELLSVAR	0	1	Unmodified	1013.5869	0.58694431	2092	Q9H0U6	MRPL18	39S ribosomal protein L18, mitochondrial	yes	yes	0	0	0	16	0																1	17.724	17.724	2	0.00084498	11941	DP690-16	129.42	49.709			0.86965	1.0048	NaN	1	0	Median	26450000	14160000	12290000	10770	2092	10029	21091	51190;51191;51192;51193	51193		4	9606
NLEPEWAAAASEVK	1	0	Unmodified	1513.7413	0.7412727	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	9	4					1								1				18.152	18.152	2	4.0329E-09	13032	DP690-13	201.09	168.05			0.76684	0.80788	14.828	2	0	Median	325410000	176960000	148450000	10771	1318	10030	21092;21093	51194;51195;51196;51197;51198	51194		5	9606
NLETFCEETRR	0	2	Unmodified	1453.662	0.66197652	2305	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	3	0			1														13.169	13.169	2	0.029892	6192	DP690-3	120.12	82.928			NaN	NaN	NaN	0	0	Median	0	0	0	10772	2305	10031	21094	51199	51199		1	9606
NLEVSSCVGSGGSSEAR	0	1	Unmodified	1694.753	0.75297638	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	8	3.92		1	1							1	3						13.136	13.136	2	1.4994E-61	6616	DP690-11	277.31	205.02			0.85091	1.047	13.446	3	0	Median	138840000	83644000	55194000	10773	2065	10032	21095;21096;21097;21098;21099;21100	51200;51201;51202;51203;51204;51205;51206;51207;51208;51209;51210;51211;51212;51213	51205		14	9606
NLFAEIIEEHLANR	0	1	Unmodified	1667.8631	0.86311917	2246	Q9NWY4	C4orf27	UPF0609 protein C4orf27	yes	yes	0	0	0	14	0														1			21.246	21.246	3	0.00010623	17182	DP690-14	111.31	111.31			0.74625	0.9114	NaN	1	0	Median	17283000	9219300	8063600	10774	2246	10033	21101	51214;51215;51216;51217	51214		4	9606
NLFASFPTEESSINYTFK	1	0	Unmodified	2093.9946	0.99458686	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.5	0.5									1	1							21.303	21.303	2	2.9502E-11	18515	DP690-10	171.76	144.21			0.7112	0.90263	NaN	1	0	Median	18156000	10539000	7617200	10775	808	10034	21102;21103	51218;51219;51220;51221;51222;51223	51218		6	9606
NLFDNLIEFLQK	1	0	Unmodified	1492.7926	0.79257999	2311	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	11	0											1						26.781	26.781	2	0.07403	24829	DP690-11	82.379	45.854			NaN	NaN	NaN	0	0	Median	1379500	0	1379500	10776	2311	10035	21104	51224	51224		1	9606
NLFEDQNTLTSICEK	1	0	Unmodified	1810.8407	0.84072875	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														18.435	18.435	2	1.6743E-09	13156	DP690-3	196.24	159.65			1.1539	1.2374	NaN	1	0	Median	15640000	7954800	7685300	10777	892	10036	21105	51225;51226;51227;51228	51227		4	9606
NLFLVIFQR	0	1	Unmodified	1148.6706	0.67061436	1143	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	11	0											1						22.64	22.64	2	0.0024164	20059	DP690-11	130.04	91.953			0.7516	0.92867	NaN	1	0	Median	6702000	3567200	3134800	10778	1143	10037	21106	51229;51230	51229		2	9606
NLFPSNLVVAAFR	0	1	Unmodified	1446.7983	0.79833407	734	P43007	SLC1A4	Neutral amino acid transporter A	yes	yes	0	0	0	11	1										1		1					22.362	22.362	2	8.4972E-05	19945	DP690-10	135.55	101.16			0.98203	1.2143	1.259	2	0	Median	21107000	9630000	11477000	10779	734	10038	21107;21108	51231;51232;51233;51234;51235;51236	51232		6	9606
NLFQQYDR	0	1	Unmodified	1082.5145	0.51450765	2325	Q9UBV8	PEF1	Peflin	yes	yes	0	0	0	11	4							1								1		15.824	15.824	2	0.040248	9362	DP690-7	125.81	105.82			0.83975	0.8996	3.6263	2	0	Median	335990000	174010000	161980000	10780	2325	10039	21109;21110	51237;51238	51238		0	9606
NLGFTAIPLHGQMSQSK	1	0	Oxidation (M)	1843.9251	0.9250675	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	1	0	13	0													2				15.626	15.626	2;3	2.5496E-05	9636	DP690-13	154.23	114.22			0.87654	0.96518	NaN	1	0	Median	281670000	143230000	138440000	10781	2090	10040	21111;21112	51239;51240;51241;51242	51242	2605	4	9606
NLGIPIITVLGDSK	1	0	Unmodified	1438.8395	0.83953018	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							22.026	22.026	2	2.1922E-05	19450	DP690-10	128.88	101.55			0.76873	0.94821	NaN	1	0	Median	93430000	54349000	39081000	10782	1240	10041	21113	51243;51244;51245;51246	51243		4	9606
NLGMTDAFELGK	1	0	Oxidation (M)	1310.6177	0.61765209	661	P35237	SERPINB6	Serpin B6	yes	yes	0	1	0	6	0						1											16.567	16.567	2	0.00072913	10040	DP690-6	113.93	74.38			1.1336	1.2871	NaN	1	0	Median	18841000	8810400	10030000	10783	661	10042	21114	51247	51247	931	1	9606
NLGMTDAFELGK	1	0	Unmodified	1294.6227	0.62273747	661	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	6	0						1											18.693	18.693	2	0.0077259	12524	DP690-6	78.655	37.229			0.63155	0.712	NaN	1	0	Median	5038900	3246500	1792400	10784	661	10042	21115	51248;51249;51250	51248		3	9606
NLGQNLWGPHR	0	1	Unmodified	1290.6582	0.6581522	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	10.6	2.92				1					1			4	1				14.638	14.638	2;3	0.00021914	8451	DP690-12	171.53	96.488			0.86347	0.84032	16.446	4	0	Linear	1471499999.9999998	622410000	849140000	10785	2298	10043	21116;21117;21118;21119;21120;21121;21122	51251;51252;51253;51254;51255;51256;51257;51258;51259;51260;51261;51262;51263;51264	51254		14	9606
NLGSINTELQDVQR	0	1	Unmodified	1585.806	0.80599822	253	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	15	0															1		17.026	17.026	2	2.4661E-09	11395	DP690-15	230.95	197.08			0.56281	0.65373	NaN	1	0	Median	22266000	12902000	9364200	10786	253	10044	21123	51265;51266;51267;51268;51269	51266		5	9606
NLGSLLKPGGFLVIMDALK	2	0	Oxidation (M)	2001.1333	0.13326936	703	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	1	1	7	0							1										21.799	21.799	3	0.00064478	16739	DP690-7	83.891	75.218			0.88107	0.942	NaN	1	0	Median	11786000	6811100	4975000	10787	703	10045	21124	51270;51271	51270	1032	2	9606
NLGTALAELR	0	1	Unmodified	1056.5928	0.59275797	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															18.02	18.02	2	0.0028011	11368	DP690-2	96.948	48.386			1.6735	1.7525	NaN	1	0	Median	5727900	2233300	3494600	10788	2482	10046	21125	51272;51273	51273		2	9606
NLHQSGFSLSGAQIDDNIPR	0	1	Unmodified	2168.061	0.061043713	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	6.67	3.77				2								1					17.001	17.001	3	1.4083E-09	11112	DP690-4	159.72	114.64			NaN	NaN	NaN	0	0	Median	88794000	67225000	21569000	10789	1359	10047	21126;21127;21128	51274;51275;51276;51277;51278;51279	51276		6	9606
NLHQSGFSLSGTQVDEGVR	0	1	Unmodified	2029.9817	0.98173076	1260	Q14195	DPYSL3	Dihydropyrimidinase-related protein 3	yes	yes	0	0	0	3.67	0.471			1	2													15.172	15.172	2;3	7.8934E-23	8782	DP690-4	214.46	188.09			0.71489	0.80004	15.131	2	0	Median	74498000	44417000	30081000	10790	1260	10048	21129;21130;21131	51280;51281;51282;51283;51284;51285	51283		6	9606
NLHQSNFSLSGAQIDDNNPR	0	1	Unmodified	2226.0414	0.041370903	1259	Q14194	CRMP1	Dihydropyrimidinase-related protein 1	yes	yes	0	0	0	4	0				1													14.827	14.827	3	2.685E-12	8346	DP690-4	167.97	149.48			0.87014	1.0139	NaN	1	0	Median	12218000	6817300	5400800	10791	1259	10049	21132	51286	51286		1	9606
NLIDAGVDALR	0	1	Unmodified	1155.6248	0.62478638	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	3.5	0.5			1	1													19.693	19.693	2	1.0983E-06	13577	DP690-4	167.93	79.564			0.93594	1.0672	NaN	1	0	Median	42646000	6539800	36106000	10792	474	10050	21133;21134	51287;51288;51289	51289		3	9606
NLIDEDGNNQWPEGLK	1	0	Unmodified	1840.8592	0.85915601	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			1														18.613	18.613	2	1.4258E-06	13240	DP690-3	142.76	103.89			1.2929	1.3745	NaN	1	0	Median	11729000	5387700	6340800	10793	82	10051	21135	51290;51291;51292;51293;51294	51290		5	9606
NLIESMQINGSVLK	1	0	Oxidation (M)	1560.8181	0.81814282	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	1	0	3	0			1														16.631	16.631	2	0.00025834	10909	DP690-3	119.74	84.97			0.95655	1.0217	NaN	1	0	Median	24628000	12848000	11780000	10794	559	10052	21136	51295;51296;51297;51298	51298	727	4	9606
NLIHGSDSVESAR	0	1	Unmodified	1383.6743	0.67425577	1191	Q13232	NME3	Nucleoside diphosphate kinase 3	yes	yes	0	0	0	12	4								1								1	11.475	11.475	3	6.2082E-05	4094	DP690-16	153.75	135.57			0.84097	0.99526	29.055	2	0	Median	21327000	11913000	9414100	10795	1191	10053	21137;21138	51299;51300;51301;51302;51303;51304;51305;51306	51300		8	9606
NLINQMLTINPAK	1	0	Oxidation (M)	1484.8021	0.80209882	1223	Q13555;Q13554	CAMK2G;CAMK2B	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta	yes	no	0	1	0	8	4				1								1					16.915	16.915	2	0.00023035	11709	DP690-12	164.66	113.57			0.76748	0.87098	5.7781	2	0	Median	56185000	31670000	24515000	10796	1223	10054	21139;21140	51307;51308;51309;51310;51311	51309	1870	5	9606
NLINQMLTINPAK	1	0	Unmodified	1468.8072	0.8071842	1223	Q13555;Q13554	CAMK2G;CAMK2B	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta	yes	no	0	0	0	12	0												1					20.563	20.563	2	0.00010483	16687	DP690-12	142.83	106.4			0.76257	0.91787	NaN	1	0	Median	17584000	10259000	7324300	10797	1223	10054	21141	51312;51313	51313		2	9606
NLIPFDQMTIEDLNEAFPETK	1	0	Oxidation (M)	2480.1781	0.17810688	282	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	1	0	15.5	0.5															1	1	23.216	23.216	2	6.049E-07	18294	DP690-16	142.95	113.48			0.72065	0.82635	10.597	2	0	Median	22242000	13379000	8863200	10798	282	10055	21142;21143	51314;51315;51316;51317;51318;51319;51320;51321;51322;51323	51320	299	10	9606
NLIPFDQMTIEDLNEAFPETKLDK	2	0	Oxidation (M)	2836.3841	0.38407691	282	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	1	1	16	0																1	22.406	22.406	3	0.0019881	17362	DP690-16	62.663	49.985			0.68361	0.76839	NaN	1	0	Median	2447500	1024700	1422800	10799	282	10056	21144	51324;51325;51326;51327	51324	299	4	9606
NLIQTLVSGIAPATR	0	1	Unmodified	1552.8937	0.89369102	1744	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	11	0											2						23.078	23.078	2	2.8481E-14	20519	DP690-11	213.84	179.88			0.55947	0.69071	NaN	1	0	Median	10859000	6046200	4812800	10800	1744	10057	21145;21146	51328;51329;51330;51331;51332;51333	51329		6	9606
NLISPDLGVVFLNVPENLK	1	0	Unmodified	2080.1568	0.15684158	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	10	0										1							23.75	23.75	2	0.00019168	21704	DP690-10	111.3	111.3			0.69321	0.84176	NaN	1	0	Median	16433000	9335100	7097400	10801	763	10058	21147	51334;51335;51336;51337	51336		4	9606
NLISPDLGVVFLNVPENLKNPEPNIK	2	0	Unmodified	2872.5698	0.56984427	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	1	10	0										1							22.037	22.037	3	5.8595E-07	19463	DP690-10	131.64	123.47			0.49253	0.6125	NaN	1	0	Median	35385000	21813000	13571000	10802	763	10059	21148	51338;51339	51338		2	9606
NLITDICTEQCTLSDQLLPK	1	0	Unmodified	2361.1556	0.1555973	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	11	0											1						23.204	23.204	2	8.3422E-14	20742	DP690-11	186.05	186.05			0.66657	0.81951	NaN	1	0	Median	19628000	11129000	8499600	10803	2437	10060	21149	51340;51341;51342	51341		3	9606
NLKMSTPGQMK	2	0	2 Oxidation (M)	1265.6108	0.61079258	150	O15297	PPM1D	Protein phosphatase 1D	yes	yes	0	2	1	13	0													1				21.235	21.235	2	0.072937	16854	DP690-13	60.019	28.597			0.050693	0.057301	NaN	1	0	Median	36838000	35080000	1757800	10804	150	10061	21150	51343	51343		0	9606
NLLALDKDSFSDPYAHICFLHR	1	1	Unmodified	2631.2904	0.29039172	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	1	10	0										1							19.146	19.146	4	0.00017387	15540	DP690-10	102.59	78.363			0.66459	0.81129	NaN	1	0	Median	121270000	74506000	46767000	10805	2276	10062	21151	51344	51344		1	9606
NLLDEELQR	0	1	Unmodified	1128.5775	0.57750184	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								17.112	17.112	2	1.3557E-05	11168	DP690-9	188.98	102.14			0.82958	0.92293	NaN	1	0	Median	134210000	72986000	61221000	10806	1319	10063	21152	51345;51346;51347;51348;51349;51350	51345		6	9606
NLLDVIDQAR	0	1	Unmodified	1155.6248	0.62478638	1117	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	7	4			1								1						20.329	20.329	2	8.832E-05	16988	DP690-11	157.99	58.858			1.0572	1.2339	20.529	2	0	Median	60558000	26313000	34245000	10807	1117	10064	21153;21154	51351;51352;51353;51354;51355;51356;51357;51358	51351		8	9606
NLLESYHVPELIK	1	0	Unmodified	1553.8453	0.84534384	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	11	0											1						18.859	18.859	3	0.024887	14970	DP690-11	75.483	41.219			NaN	NaN	NaN	0	0	Median	0	0	0	10808	732	10065	21155	51359	51359		1	9606
NLLGELNPSIPLLPDDILSQIR	0	1	Unmodified	2429.353	0.3529752	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								25.686	25.686	2	0.0011122	21283	DP690-9	88.78	88.78			0.66231	0.75562	NaN	1	0	Median	750310	479920	270390	10809	1762	10066	21156	51360;51361	51360		2	9606
NLLIFENLIDLK	1	0	Unmodified	1443.8337	0.83371653	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7.5	3.2		1							2	1							24.263	24.263	2	7.2644E-05	22133	DP690-10	166.69	134.53			0.83117	1.0256	5.9847	4	0	Median	125910000	67956000	57950000	10810	1046	10067	21157;21158;21159;21160	51362;51363;51364;51365;51366;51367;51368;51369;51370;51371;51372;51373	51363		12	9606
NLLIFENLIDLKR	1	1	Unmodified	1599.9348	0.93482755	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.5	0.5									2	2							21.812	21.812	2;3	1.4262E-05	19136	DP690-10	193.22	158.14			0.84241	1.0538	5.9025	3	0	Median	134090000	63924000	70168000	10811	1046	10068	21161;21162;21163;21164	51374;51375;51376;51377;51378;51379;51380;51381;51382;51383;51384;51385	51374		12	9606
NLLISVQSR	0	1	Unmodified	1028.5978	0.59784335	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9	0									1								15.808	15.808	2	0.034742	9597	DP690-9	72.23	39.231			0.85402	1.0699	NaN	1	0	Median	7775000	3948700	3826300	10812	1102	10069	21165	51386;51387	51387		2	9606
NLLLSGAQLEASR	0	1	Unmodified	1370.7518	0.75177781	2030	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	14	0														1			17.578	17.578	2	8.6515E-11	12464	DP690-14	215.83	185.9			0.84011	0.9665	NaN	1	0	Median	222160000	125830000	96329000	10813	2030	10070	21166	51388;51389;51390	51389		3	9606
NLLNLDVIK	1	0	Unmodified	1040.623	0.62299547	1707	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	10	0										1							19.526	19.526	2	0.02327	16081	DP690-10	76.17	24.977			0.97984	1.1968	NaN	1	0	Median	25737000	13121000	12616000	10814	1707	10071	21167	51391	51391		1	9606
NLLSCVYSCPSYIAK	1	0	Unmodified	1773.843	0.84297736	2122	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	10	0										1							18.922	18.922	2	0.00010704	15169	DP690-10	122.39	101.16			0.95392	1.1754	NaN	1	0	Median	52756000	26696000	26060000	10815	2122	10072	21168	51392	51392		1	9606
NLLSLGHNNIVR	0	1	Unmodified	1348.7575	0.75753189	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	13	0													2				15.438	15.438	2;3	4.8732E-08	9365	DP690-13	172.56	141.03			0.8262	0.96198	5.6549	2	0	Median	340850000	183220000	157640000	10816	1114	10073	21169;21170	51393;51394;51395;51396;51397;51398;51399;51400	51399		8	9606
NLLTVTSSDEMMK	1	0	Oxidation (M)	1483.6898	0.68983076	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									1	1							16.089	16.089	2	7.8342E-05	9842	DP690-9	172.56	142.79			0.83366	1.0015	1.6838	2	0	Median	204640000	108800000	95838000	10817	1046	10074	21171;21172	51401;51402;51403;51404;51405;51406	51404	1629;1630	6	9606
NLLTVTSSDEMMK	1	0	2 Oxidation (M)	1499.6847	0.68474538	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	9.33	0.471									2	1							15.639	15.639	2	0.001459	8046	DP690-9	129.88	94.366			0.77573	0.97315	23.932	2	0	Median	109650000	25568000	84081000	10818	1046	10074	21173;21174;21175	51407;51408;51409;51410;51411;51412;51413	51413	1629;1630	6	9606
NLLTVTSSDEMMK	1	0	Unmodified	1467.6949	0.69491614	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								17.649	17.649	2	0.014126	11929	DP690-9	85.288	59.903			0.7532	0.96548	NaN	1	0	Median	15041000	7471400	7569800	10819	1046	10074	21176	51414	51414		1	9606
NLLVSGWWGFVR	0	1	Unmodified	1432.7616	0.76155464	1292	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	9	0									1								23.182	23.182	2	0.0075339	18631	DP690-9	79.148	79.148			1.0022	1.208	NaN	1	0	Median	1725900	893380	832530	10820	1292	10075	21177	51415	51415		1	9606
NLMQTLMEDYETHK	1	0	Unmodified	1751.7859	0.78585641	2438	Q9Y2D5	AKAP2	A-kinase anchor protein 2	yes	yes	0	0	0	11	0											1						20.902	20.902	3	0.013178	17719	DP690-11	60.364	44.479			0.85238	1.0438	NaN	1	0	Median	22384000	12468000	9916800	10821	2438	10076	21178	51416	51416		1	9606
NLNDQVLFIDQGNRPLFEDMTDSDCR	0	2	Oxidation (M)	3127.3975	0.39751192	1245	Q14116	IL18	Interleukin-18	yes	yes	0	1	1	7	0							1										19.774	19.774	3	0.016755	14469	DP690-7	43.38	37.33			0.67589	0.69344	NaN	1	0	Median	18097000	10372000	7725100	10822	1245	10077	21179	51417;51418	51418	1894	2	9606
NLNGTLHELLR	0	1	Unmodified	1278.7044	0.70443369	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											2						17.344	17.344	2;3	5.6689E-05	12759	DP690-11	141.91	141.91			0.8513	0.98439	2.5654	2	0	Median	366740000	195340000	171400000	10823	891	10078	21180;21181	51419;51420;51421;51422;51423;51424;51425	51421		7	9606
NLNNSNLFSPVNR	0	1	Unmodified	1487.7481	0.74808942	867	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	11	0											1						16.6	16.6	2	0.045031	11722	DP690-11	90.05	35.069			NaN	NaN	NaN	0	0	Median	0	0	0	10824	867	10079	21182	51426	51426		1	9606
NLNPEDIDQLITISGMVIR	0	1	Oxidation (M)	2156.1147	0.11471877	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	1	0	11	0											1						23.751	23.751	2	0.00046506	21438	DP690-11	107.61	82.066			0.8334	1.0305	NaN	1	0	Median	9889000	5550900	4338100	10825	651	10080	21183	51427;51428;51429	51428	908	3	9606
NLNPNDSIVVNSCQMK	1	0	Unmodified	1831.8557	0.85566731	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										1							15.58	15.58	2	1.0703E-07	10380	DP690-10	172.13	134.16			NaN	NaN	NaN	0	0	Median	14127000	0	14127000	10826	1158	10081	21184	51430	51430		1	9606
NLNPNDSIVVNSCQMK	1	0	Oxidation (M)	1847.8506	0.85058193	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	1	0	10	0										1							14.385	14.385	2	0.053969	8604	DP690-10	86.911	56.021			NaN	NaN	NaN	0	0	Median	0	0	0	10827	1158	10081	21185	51431	51431		1	9606
NLPFDFTWK	1	0	Unmodified	1166.576	0.57604528	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11.2	0.433											3	1					21.505	21.505	2	0.0075877	18427	DP690-11	118.74	75.66			0.80103	0.97122	NaN	1	0	Median	76320000	71351000	4968900	10828	849	10082	21186;21187;21188;21189	51432;51433;51434;51435;51436;51437	51432		6	9606
NLPGLVQEGEPFSEEATLFTK	1	0	Unmodified	2305.1478	0.14779303	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	11	0											1						21.906	21.906	2	4.3875E-16	19151	DP690-11	182.57	132.42			NaN	NaN	NaN	0	0	Median	12800000	0	12800000	10829	1524	10083	21190	51438;51439	51438		2	9606
NLPIYSEEIVEMYK	1	0	Oxidation (M)	1742.8437	0.84368886	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															19.423	19.423	2	0.00059713	12916	DP690-2	109.72	81.49			1.1513	1.1624	NaN	1	0	Median	16612000	7335400	9276900	10830	668	10084	21191	51440;51441	51441	959	2	9606
NLPIYSEEIVEMYK	1	0	Unmodified	1726.8488	0.84877424	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1															20.796	20.796	2	0.0024468	14342	DP690-2	90.05	73.913			1.045	1.0285	NaN	1	0	Median	1978300	1038200	940130	10831	668	10084	21192	51442;51443	51442		2	9606
NLPLHELITPEFISTFIK	1	0	Unmodified	2111.1667	0.16667798	276	O75818	RPP40	Ribonuclease P protein subunit p40	yes	yes	0	0	0	14	0														1			23.078	23.078	3	2.2832E-05	19484	DP690-14	122.97	111.72			0.62343	0.73529	NaN	1	0	Median	8051200	4811300	3240000	10832	276	10085	21193	51444;51445;51446;51447	51445		4	9606
NLPLPPPPPPR	0	1	Unmodified	1193.6921	0.69207809	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	11.2	3.29				1								3	1	1			15.269	15.269	2	0.00020586	9441	DP690-12	147.29	78.906			0.47709	0.53435	7.9556	4	0	Median	1710599999.9999998	1364600000	346020000	10833	959	10086	21194;21195;21196;21197;21198;21199	51448;51449;51450;51451;51452;51453;51454;51455;51456;51457;51458;51459;51460;51461;51462;51463;51464;51465;51466;51467	51451		20	9606
NLPPEEQMISALPDIK	1	0	Oxidation (M)	1809.9183	0.91825079	152	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	1	0	4	0				1													18.03	18.03	2	0.00033232	12403	DP690-4	117.03	90.617			0.62452	0.67681	NaN	1	0	Median	8829600	5278000	3551600	10834	152	10087	21200	51468;51469;51470;51471;51472	51470	169	5	9606
NLPPSGAVPVTGIPPHVVK	1	0	Unmodified	1878.0727	0.072718018	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	12	0												2					15.957	15.957	3	0.0046704	9486	DP690-12	62.617	62.617			0.61753	0.73614	1.1777	2	0	Median	108830000	65081000	43748000	10835	1196	10088	21201;21202	51473;51474;51475;51476;51477;51478	51473		6	9606
NLPYVYIPSK	1	0	Unmodified	1192.6492	0.64921022	2248	Q9NX24	NHP2	H/ACA ribonucleoprotein complex subunit 2	yes	yes	0	0	0	16	0																1	17.897	17.897	2	0.0023331	12137	DP690-16	100.02	71.812			0.74804	0.87086	NaN	1	0	Median	25066000	14023000	11043000	10836	2248	10089	21203	51479;51480;51481;51482	51481		4	9606
NLQDAMQVCR	0	1	Oxidation (M)	1249.5543	0.55434033	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	4	0				3													11.243	11.243	2	0.025219	3763	DP690-4	92.439	62.772			NaN	NaN	NaN	0	0	Median	4542100	0	4542100	10837	791	10090	21204;21205;21206	51483;51484;51485	51483	1199	3	9606
NLQEAEEWYK	1	0	Unmodified	1308.5986	0.59863121	424	P08670;P41219	VIM;PRPH	Vimentin;Peripherin	yes	no	0	0	0	12.3	0.471												2	1				16.509	16.509	2	9.064E-05	10798	DP690-13	154.12	118.97			0.78708	0.82269	17.189	2	0	Median	1437400000	754780000	682630000	10838	424	10091	21207;21208;21209	51486;51487;51488;51489;51490;51491;51492;51493;51494	51493		9	9606
NLQEEIDALESR	0	1	Unmodified	1415.6892	0.68923713	2189	Q9NQP4	PFDN4	Prefoldin subunit 4	yes	yes	0	0	0	8	0								1									19.916	19.916	2	0.00032506	13518	DP690-8	117.71	73.936			0.87639	1.0543	NaN	1	0	Median	1997800	1187700	810090	10839	2189	10092	21210	51495;51496	51495		2	9606
NLQEFLGGLSPGVLDR	0	1	Unmodified	1713.905	0.90498399	1787	Q92759	GTF2H4	General transcription factor IIH subunit 4	yes	yes	0	0	0	13	0													1				22.413	22.413	2	0.0014869	18411	DP690-13	131.79	77.01			NaN	NaN	NaN	0	0	Median	4199300	0	4199300	10840	1787	10093	21211	51497;51498	51497		2	9606
NLQEGNEVDSQSSIR	0	1	Unmodified	1674.7809	0.78090569	239	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	11	0											1						12.959	12.959	2	1.8471E-15	6429	DP690-11	243.85	202.77			0.81119	0.96736	NaN	1	0	Median	39882000	20862000	19019000	10841	239	10094	21212	51499;51500;51501;51502	51500		4	9606
NLQEGQVTDPR	0	1	Unmodified	1255.6157	0.61567826	1780	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	0	0	15	0															1		12.116	12.116	2	0.026342	4793	DP690-15	70.399	24.27			0.31589	0.36565	NaN	1	0	Median	15069000	11109000	3960300	10842	1780	10095	21213	51503	51503		1	9606
NLQEIQQAGER	0	1	Unmodified	1284.6422	0.64222736	1643	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	8.33	3.77			1								2						12.971	12.971	2	8.1719E-05	6416	DP690-11	164.68	52.576			0.63697	0.76799	NaN	1	0	Median	90379000	60738000	29642000	10843	1643	10096	21214;21215;21216	51504;51505;51506;51507;51508	51505		5	9606
NLQNLLILTAIK	1	0	Unmodified	1352.8391	0.83913625	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	10.1	4.53		1	1						1	1	1		2	1		1	22.107	22.107	2	0.00010991	17332	DP690-9	119.53	102.02			0.89416	1.105	18.692	6	0	Median	221580000	119010000	102570000	10844	1075	10097	21217;21218;21219;21220;21221;21222;21223;21224;21225	51509;51510;51511;51512;51513;51514;51515;51516;51517;51518;51519;51520;51521;51522;51523;51524;51525;51526;51527;51528;51529;51530;51531;51532;51533	51531		25	9606
NLQPTLSDVGNQVLLR	0	1	Unmodified	1765.9686	0.96864688	2255	Q9NXL9	MCM9	DNA helicase MCM9	yes	yes	0	0	0	11	0											1						20.787	20.787	2	0.00078489	17677	DP690-11	99.283	47.036			0.80143	0.95542	NaN	1	0	Median	42119000	25660000	16459000	10845	2255	10098	21226	51534;51535	51534		2	9606
NLQQELETQNQK	1	0	Unmodified	1471.7267	0.72668527	1092	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	11	0											1						14.126	14.126	2	1.6132E-05	8080	DP690-11	191.45	132.38			0.68258	0.81549	NaN	1	0	Median	101410000	64065000	37344000	10846	1092	10099	21227	51536;51537;51538;51539	51537		4	9606
NLQSVVLSK	1	0	Unmodified	986.57605	0.57604528	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	11	0											1						14.747	14.747	2	0.003906	9022	DP690-11	104.2	21.748			0.84771	0.9717	NaN	1	0	Median	173490000	89157000	84329000	10847	736	10100	21228	51540;51541;51542	51540		3	9606
NLQVEYEQLKDQHLR	1	1	Unmodified	1911.9803	0.9802742	765	P46939	UTRN	Utrophin	yes	yes	0	0	1	10	0										1							15.189	15.189	3	0.050273	9889	DP690-10	48.131	48.131			0.66501	0.80492	NaN	1	0	Median	137580000	71331000	66252000	10848	765	10101	21229	51543	51543		1	9606
NLQYYDISAK	1	0	Unmodified	1213.5979	0.59790293	991	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	11	4							1								1		15.533	15.533	2	0.0012449	9507	DP690-15	107.15	55.961			0.68428	0.76278	NaN	1	0	Median	158400000	71542000	86859000	10849	991	10102	21230;21231	51544;51545;51546;51547;51548;51549	51546		6	9606
NLSDSEKELYIQHAK	2	0	Unmodified	1773.8897	0.88972785	1069	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	1	15	0															2		13.503	13.503	3;4	4.5451E-06	6726	DP690-15	143.25	118.83			0.91059	1.0438	8.5944	2	0	Median	741200000	396140000	345070000	10850	1069	10103	21232;21233	51550;51551;51552;51553;51554;51555;51556;51557	51553		8	9606
NLSDSEKELYIQHAKEDETR	2	1	Unmodified	2404.1506	0.15064658	1069	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	2	15	0															2		13.362	13.362	4;5	3.1775E-05	6517	DP690-15	118.23	100.88			0.81347	0.9297	7.2169	2	0	Median	327370000	175950000	151420000	10851	1069	10104	21234;21235	51558;51559;51560;51561	51558		4	9606
NLSEEGLLR	0	1	Unmodified	1029.5455	0.54547343	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	9	0									1								15.495	15.495	2	0.039115	9166	DP690-9	104.75	17.05			NaN	NaN	NaN	0	0	Median	0	0	0	10852	1158	10105	21236	51562	51562		1	9606
NLSFFLTPPCAR	0	1	Unmodified	1421.7126	0.71255553	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	3	0			3														20.507	20.507	2	0.0019901	15741	DP690-3	169.41	110.97			NaN	NaN	NaN	0	0	Median	9243000	9243000	0	10853	724	10106	21237;21238;21239	51563;51564;51565;51566	51566		4	9606
NLSGQPNFPCR	0	1	Unmodified	1288.5983	0.59825406	2173	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	11.3	1.25										1	1		1				13.893	13.893	2	9.8092E-05	7786	DP690-11	131.62	109.53			0.49539	0.59791	44.784	3	0	Median	172500000	106400000	66090000	10854	2173	10107	21240;21241;21242	51567;51568;51569;51570;51571;51572;51573;51574;51575;51576	51570		10	9606
NLSPGAVESDVR	0	1	Unmodified	1242.6204	0.62042929	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	6.5	3.5			1							1							14.332	14.332	2	0.00025271	7775	DP690-3	152.04	96.58			1.8513	2.0468	NaN	1	0	Median	81212000	53382000	27830000	10855	878	10108	21243;21244	51577;51578;51579;51580;51581	51581		5	9606
NLSPVVSNELLEQAFSQFGPVEK	1	0	Unmodified	2531.2908	0.29076888	1761	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	12	0												2					23.895	23.895	2	0.00045487	20488	DP690-12	120.24	87.947			NaN	NaN	NaN	0	0	Median	543180	0	543180	10856	1761	10109	21245;21246	51582;51583;51584	51584		3	9606
NLSPYVSNELLEEAFSQFGPIER	0	1	Unmodified	2638.2915	0.29149716	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	11	0											2						24.922	24.922	2	2.5941E-85	22842	DP690-11	284.51	249.41			NaN	NaN	NaN	0	0	Median	15057000	8417200	6639400	10857	566	10110	21247;21248	51585;51586;51587;51588;51589;51590;51591	51586		7	9606
NLSQEIIELLK	1	0	Unmodified	1298.7446	0.74456717	271	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	10	0										2							23.466	23.466	2	0.017586	21327	DP690-10	101.9	60.909			NaN	NaN	NaN	0	0	Median	0	0	0	10858	271	10111	21249;21250	51592;51593	51593		2	9606
NLSSDEATNPISR	0	1	Unmodified	1402.6688	0.66883604	1544	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	13.5	0.5													1	1			13.541	13.541	2	3.8529E-10	6702	DP690-13	234.67	200.48			0.79825	0.96702	7.1961	2	0	Median	90754000	48769000	41984000	10859	1544	10112	21251;21252	51594;51595;51596;51597;51598;51599	51594		6	9606
NLSSNEAISLEEIR	0	1	Unmodified	1573.7948	0.79476484	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7	3.56		1							1	1							17.665	17.665	2	3.2395999999999996E-39	13345	DP690-10	342.26	272.23			0.83895	0.9371	10.319	3	0	Median	719100000	376510000	342590000	10860	1046	10113	21253;21254;21255	51600;51601;51602;51603;51604;51605;51606	51602		7	9606
NLTEQNSYSNIPHEGK	1	0	Unmodified	1829.8544	0.85440498	2271	Q9NZB2;Q5T035	FAM120A;C9orf129	Constitutive coactivator of PPAR-gamma-like protein 1;Putative uncharacterized protein C9orf129	yes	no	0	0	0	11	0											1						12.987	12.987	3	0.074884	6414	DP690-11	57.788	25.503			NaN	NaN	NaN	0	0	Median	0	0	0	10861	2271	10114	21256	51607	51607		1	9606
NLTLDQMIR	0	1	Unmodified	1102.5805	0.58047873	1525	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	14	0														1			18.045	18.045	2	0.01286	13120	DP690-14	86.67	33.116			0.81931	0.99299	NaN	1	0	Median	37460000	16797000	20663000	10862	1525	10115	21257	51608	51608		1	9606
NLTNPNTVIILIGNK	1	0	Unmodified	1622.9356	0.93555583	939	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	11	4							1								1		19.714	19.714	2	2.0258E-07	14891	DP690-15	193.83	182.3			0.71764	0.81536	9.8861	2	0	Median	34081000	19420000	14661000	10863	939	10116	21258;21259	51609;51610;51611;51612;51613	51612		4	9606
NLTVILSDASAPGEGEHK	1	0	Unmodified	1836.9218	0.92175626	2088	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	11	0											2						16.323	16.323	3	5.4E-05	11297	DP690-11	133.32	90.635			NaN	NaN	NaN	0	0	Median	41137000	41137000	0	10864	2088	10117	21260;21261	51614;51615	51614		2	9606
NLTYSAPLYVDITK	1	0	Unmodified	1596.8399	0.83992412	630	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	3	0			2														19.427	19.427	2	0.0011737	14336	DP690-3	98.407	73.339			3.2967	3.4828	NaN	1	0	Median	10748000	2426700	8321400	10865	630	10118	21262;21263	51616;51617	51616		2	9606
NLVCTDLFTR	0	1	Unmodified	1237.6125	0.61250714	589	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	12	0												1					18.421	18.421	2	0.017221	13740	DP690-12	105.52	55.48			NaN	NaN	NaN	0	0	Median	0	0	0	10866	589	10119	21264	51618	51618		1	9606
NLVDNITGQR	0	1	Unmodified	1128.5887	0.58873523	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.8	3.54		1							1	1	1	1					16.029	16.029	2	0.00063119	9880	DP690-9	114.89	47.401			0.83941	0.97326	8.3342	5	0	Median	833360000	449480000	383880000	10867	1319	10120	21265;21266;21267;21268;21269	51619;51620;51621;51622;51623;51624;51625;51626;51627;51628;51629;51630	51629		12	9606
NLVEELPQPR	0	1	Unmodified	1193.6404	0.64043645	2049	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	yes	yes	0	0	0	16	0																1	16.327	16.327	2	0.00089052	10282	DP690-16	109.48	80.308			0.56888	0.66164	NaN	1	0	Median	12792000	6962300	5829400	10868	2049	10121	21270	51631;51632	51632		2	9606
NLVEQHIQDIVVHYTFNK	1	0	Unmodified	2196.1328	0.13275209	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												2					19.8	19.8	3;4	1.6091E-06	15612	DP690-12	127.91	104.81			0.85798	1.0239	1.1558	2	0	Median	79295000	41287000	38008000	10869	375	10122	21271;21272	51633;51634;51635;51636;51637;51638	51634		6	9606
NLVNAQQVAGSAQQQGDQSIR	0	1	Unmodified	2211.0992	0.099220133	1443	Q5TAX3	ZCCHC11	Terminal uridylyltransferase 4	yes	yes	0	0	0	10	0										1							15.104	15.104	2	2.4553E-13	9666	DP690-10	243.92	189.9			NaN	NaN	NaN	0	0	Median	0	0	0	10870	1443	10123	21273	51639	51639		1	9606
NLVPGESVYGEK	1	0	Unmodified	1290.6456	0.6455814	558	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	14	0														1			14.863	14.863	2	0.022741	8781	DP690-14	70.399	12.169			0.91059	1.1025	NaN	1	0	Median	73686000	37286000	36399000	10871	558	10124	21274	51640;51641	51641		2	9606
NLVPGESVYGEKR	1	1	Unmodified	1446.7467	0.74669243	558	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	14	0														1			13.304	13.304	3	0.00018307	6535	DP690-14	107.17	69.566			0.93069	1.1277	NaN	1	0	Median	66459000	34043000	32416000	10872	558	10125	21275	51642;51643	51643		2	9606
NLVQCGDFPHLLVYGPSGAGK	1	0	Unmodified	2228.1048	0.10482278	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	14	0														1			19.073	19.073	3	1.8089E-07	14354	DP690-14	142.23	116.39			1.3218	1.5566	NaN	1	0	Median	165850000	74142000	91710000	10873	712	10126	21276	51644;51645;51646	51645		3	9606
NLVSPAYCTQESR	0	1	Unmodified	1523.7038	0.70384134	2222	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	12	0												1					13.819	13.819	2	0.00021617	7231	DP690-12	118.28	101.75			0.70313	0.84589	NaN	1	0	Median	18365000	9796200	8568900	10874	2222	10127	21277	51647;51648;51649	51647		3	9606
NLYLSQLIILDTLEK	1	0	Unmodified	1775.0081	0.0080520759	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	9	0									1								23.958	23.958	2	0.0029963	19448	DP690-9	85.536	85.536			0.78998	0.92105	NaN	1	0	Median	1236400	668820	567620	10875	550	10128	21278	51650	51650		1	9606
NMAPGAVCSPGESK	1	0	Unmodified	1403.6173	0.61733452	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										1							11.93	11.93	2	0.0021134	5111	DP690-10	91.123	71.126			1.8886	2.313	NaN	1	0	Median	29409000	11908000	17500000	10876	2065	10129	21279	51651;51652	51651		2	9606
NMAQFSVLLPR	0	1	Unmodified	1274.6805	0.68052712	1181	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	7	0							1										19.95	19.95	2	0.0017448	14575	DP690-7	100.25	52.377			0.82876	0.94655	NaN	1	0	Median	5286600	3212900	2073700	10877	1181	10130	21280	51653	51653		1	9606
NMAQFSVLLPR	0	1	Oxidation (M)	1290.6754	0.67544174	1181	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	1	0	7	0							1										18.233	18.233	2	0.0090662	12398	DP690-7	108.98	64.53			NaN	NaN	NaN	0	0	Median	0	0	0	10878	1181	10130	21281	51654	51654	1831	1	9606
NMDAIIVDSEK	1	0	Oxidation (M)	1249.586	0.58601761	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	1	0	10	0										1							13.616	13.616	2	0.0060483	7551	DP690-10	90.827	52.26			0.49328	0.61062	NaN	1	0	Median	64489000	35563000	28926000	10879	1285	10131	21282	51655;51656	51656	1972	2	9606
NMDPLNDNIATLLHQSSDK	1	0	Oxidation (M)	2141.0059	0.005896599	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															18.821	18.821	3	4.5919E-05	12085	DP690-2	118.23	103.11			1.0128	1.0232	NaN	1	0	Median	18279000	8864400	9414200	10880	668	10132	21283	51657;51658;51659	51657	960	3	9606
NMEVMGFLHGIFER	0	1	2 Oxidation (M)	1710.7858	0.78579683	2352	Q9UI26	IPO11	Importin-11	yes	yes	0	2	0	3	0			2														19.088	19.088	3	0.011152	14014	DP690-3	84.297	55.491			NaN	NaN	NaN	0	0	Median	2936100	0	2936100	10881	2352	10133	21284;21285	51660;51661	51660	2789;2790	2	9606
NMFFIPSGLAVFTR	0	1	Unmodified	1598.8279	0.82791964	1842	Q96EK7	FAM120B	Constitutive coactivator of peroxisome proliferator-activated receptor gamma	yes	yes	0	0	0	11	0											1						23.822	23.822	2	0.0052853	21502	DP690-11	80.916	50.99			0.54468	0.65741	NaN	1	0	Median	3769000	2052800	1716300	10882	1842	10134	21286	51662	51662		1	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	0	1	Oxidation (M)	2204.893	0.89299211	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	0	14	0														2			13.378	13.378	2	9.1046E-68	6513	DP690-14	313.76	267.87			0.7482	0.85463	NaN	1	0	Median	256190000	151080000	105100000	10883	563	10135	21287;21288	51663;51664;51665;51666;51667	51666	738	5	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	0	1	Unmodified	2188.8981	0.89807748	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	14	0														1			14.366	14.366	2	1.3688E-75	7932	DP690-14	323.91	309.48			0.74118	0.85137	NaN	1	0	Median	229110000	129550000	99558000	10884	563	10135	21289	51668;51669;51670;51671	51671		4	9606
NMGLSPPASSTSTSSTCR	0	1	Oxidation (M)	1855.804	0.80402567	2166	Q9HC52	CBX8	Chromobox protein homolog 8	yes	yes	0	1	0	13	0													1				11.853	11.853	2	2.0994000000000002E-29	4479	DP690-13	238.03	219.84			0.7676	0.92337	NaN	1	0	Median	7931000	3445800	4485200	10885	2166	10136	21290	51672;51673;51674;51675;51676	51675	2653	5	9606
NMITGTSQADCAVLIVAAGVGEFEAGISK	1	0	Oxidation (M)	2924.426	0.4259585	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	1	0	11	3.46					1								3				25.836	25.836	2;3	8.3609E-25	21311	DP690-5	186.01	186.01			1.0329	1.085	8.9887	2	0	Median	7517900	3672400	3845500	10886	1031;1118	10137	21291;21292;21293;21294	51677;51678;51679;51680;51681;51682;51683;51684;51685;51686;51687	51687	1566	11	9606
NMITGTSQADCAVLIVAAGVGEFEAGISK	1	0	Unmodified	2908.431	0.43104388	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	9	4					1								1				26.463	26.463	2	2.5735E-45	21984	DP690-5	218.25	218.25			0.97677	1.0289	16.584	2	0	Median	5992500	2744600	3247900	10887	1031;1118	10137	21295;21296	51688;51689;51690;51691;51692;51693;51694	51693		7	9606
NMLLVMDTAEIFHSADAR	0	1	2 Oxidation (M)	2064.9609	0.96086066	1772	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	2	0	2	0		1															18.499	18.499	3	0.051074	11915	DP690-2	43.955	21.108			1.4147	1.4463	NaN	1	0	Median	2439900	962550	1477300	10888	1772	10138	21297	51695	51695		0	9606
NMLQFNLQILPK	1	0	Oxidation (M)	1473.8014	0.80137054	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	1	0	12	0												1					20.346	20.346	2	0.00055688	16312	DP690-12	140.45	90.162			NaN	NaN	NaN	0	0	Median	21332000	0	21332000	10889	154	10139	21298	51696;51697	51697	173	2	9606
NMMAACDPR	0	1	Unmodified	1064.4202	0.42015503	1034;406;2017;370;2010;1217;1389	P07437;A6NNZ2;P68371;Q9BVA1;Q13885;Q13509;P04350;Q3ZCM7;Q9BUF5	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A;TUBB8;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-6 chain	no	no	0	0	0	7.67	3.77					2								1				11.9	11.9	2	0.00082286	4506	DP690-13	131.03	112.05			0.9484	1.0172	5.6694	2	0	Median	554220000	278590000	275630000	10890	406;1034;2017;1217;370;1389;2010	10140	21299;21300;21301	51698;51699;51700;51701;51702;51703	51698		6	9606
NMNLPEIPR	0	1	Oxidation (M)	1098.5492	0.5491786	1775	Q92572	AP3S1	AP-3 complex subunit sigma-1	yes	yes	0	1	0	16	0																3	14.891	14.891	2	0.011244	8361	DP690-16	106.6	63.73			NaN	NaN	NaN	0	0	Median	16473000	16473000	0	10891	1775	10141	21302;21303;21304	51704;51705;51706;51707	51704	2337	4	9606
NMQDMVEDYR	0	1	Oxidation (M)	1315.5173	0.51728612	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	6	3.56	1							1	1								13.914	13.914	2	0.0033524	5513	DP690-1	126.24	69.513		+	NaN	NaN	NaN	0	0	Median	20777000	20777000	0	10892	369	10142	21305;21306;21307	51708;51709;51710;51711;51712;51713	51709	383;384	6	9606
NMQDMVEDYR	0	1	2 Oxidation (M)	1331.5122	0.51220074	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	0	9	5.39		1	1	1				1	1						2	1	12.176	12.176	2	0.00084193	4539	DP690-4	138.08	123.78		+	NaN	NaN	NaN	0	0	Median	114850000	114850000	0	10893	369	10142	21308;21309;21310;21311;21312;21313;21314;21315	51714;51715;51716;51717;51718;51719;51720;51721;51722;51723;51724;51725;51726;51727;51728;51729	51725	383;384	16	9606
NMQEPIALHEMDTSNGVLLPFYDPDTSIIYLCGK	1	0	2 Oxidation (M)	3912.826	0.82601325	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	2	0	13	0													2				22.447	22.447	3	0.0017289	18661	DP690-13	50.704	50.704			NaN	NaN	NaN	0	0	Median	4911000	3852300	1058700	10894	2395	10143	21316;21317	51730;51731	51730	2826;2827	2	9606
NMQLPNGVTYHTGTYQDR	0	1	Oxidation (M)	2109.9538	0.95380145	1872	Q96HR3	MED30	Mediator of RNA polymerase II transcription subunit 30	yes	yes	0	1	0	15	0															1		13.535	13.535	3	0.00014541	6778	DP690-15	106.87	90.017			0.77057	0.89102	NaN	1	0	Median	13191000	8770200	4420700	10895	1872	10144	21318	51732;51733	51732	2428	2	9606
NMSVHLSPCFR	0	1	Oxidation (M)	1362.6173	0.61727494	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	1	0	14	3.03								1							2	2	13.332	13.332	2;3	0.00020524	6271	DP690-16	142.36	119.04			0.82939	0.88848	6.2758	5	0	Median	1727099999.9999998	936880000	790190000	10896	976	10145	21319;21320;21321;21322;21323	51734;51735;51736;51737;51738;51739;51740;51741;51742;51743;51744;51745;51746;51747;51748;51749;51750	51747	1492	17	9606
NMSVHLSPCFR	0	1	Unmodified	1346.6224	0.62236032	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	16	0																1	14.869	14.869	3	0.029948	8492	DP690-16	55.452	25.247			0.85327	0.9788	NaN	1	0	Median	32260000	17265000	14994000	10897	976	10145	21324	51751;51752	51752		2	9606
NMSVIAHVDHGK	1	0	Unmodified	1306.6452	0.64520425	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	11	0											1						10.777	10.777	3	0.002234	3151	DP690-11	109.84	67.42			1.0144	1.1138	NaN	1	0	Median	303110000	153020000	150080000	10898	483	10146	21325	51753;51754;51755;51756;51757	51754		5	9606
NMVGAGEVDEDLEVETKEECEK	2	0	Oxidation (M)	2525.0785	0.078528774	1876	Q96I25	RBM17	Splicing factor 45	yes	yes	0	1	1	13	0													1				15.45	15.45	3	2.2592E-06	9439	DP690-13	128.05	101.29			NaN	NaN	NaN	0	0	Median	10898000	10898000	0	10899	1876	10147	21326	51758	51758	2430	1	9606
NMVVYAGVEEQPK	1	0	Oxidation (M)	1478.7075	0.70752973	1302	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	1	0	2	0		2															13.555	13.555	2	0.036364	6063	DP690-2	90.685	45.252			NaN	NaN	NaN	0	0	Median	0	0	0	10900	1302	10148	21327;21328	51759;51760	51760	1995	2	9606
NNAFPCQVNIK	1	0	Unmodified	1303.6343	0.63430521	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10	0										2							14.961	14.961	2	0.02182	9404	DP690-10	97.635	65.315			NaN	NaN	NaN	0	0	Median	67648000	67648000	0	10901	2190	10149	21329;21330	51761;51762	51762		2	9606
NNASTDYDLSDK	1	0	Unmodified	1341.5685	0.56845329	698	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	10.7	1.7									1	1			1				12.72	12.72	2	4.1438E-10	5483	DP690-13	225.67	214.91			1.0357	1.2207	4.2365	3	0	Plateau	250770000	121340000	129430000	10902	698	10150	21331;21332;21333	51763;51764;51765;51766;51767;51768;51769;51770;51771;51772;51773;51774	51769		12	9606
NNAYLAQSPQLYK	1	0	Unmodified	1508.7623	0.7623425	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	4	0				1													15.55	15.55	2	0.00018989	9227	DP690-4	156.16	124.53			0.89308	0.97459	NaN	1	0	Median	19269000	11471000	7798000	10903	495	10151	21334	51775;51776;51777;51778	51777		4	9606
NNDLQDNYLSEQNK	1	0	Unmodified	1693.7544	0.75435658	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	11	0											1						14.703	14.703	2	4.3119E-15	8940	DP690-11	238.92	203.74			0.82921	1.0061	NaN	1	0	Median	40740000	24274000	16466000	10904	1573	10152	21335	51779;51780;51781;51782	51780		4	9606
NNEDGPGLIMEEQHK	1	0	Oxidation (M)	1725.7628	0.76281278	1488;1881	Q6P1Q9;Q96IZ6	METTL2B;METTL2A	Methyltransferase-like protein 2B;Methyltransferase-like protein 2A	no	no	0	1	0	6	0						1											12.407	12.407	3	0.025843	5006	DP690-6	55.335	55.335			0.78586	0.90081	NaN	1	0	Median	13883000	7317600	6565500	10905	1488;1881	10153	21336	51783	51783	2174	1	9606
NNEDISIIPPLFTVSVDHR	0	1	Unmodified	2165.1117	0.1116823	836	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	0	16	0																1	21.674	21.674	3	6.4978E-12	16498	DP690-16	170.89	145.3			0.73678	0.8569	NaN	1	0	Median	14124000	7809500	6314400	10906	836	10154	21337	51784;51785;51786;51787	51787		4	9606
NNFCGVGICYGSMNR	0	1	Unmodified	1747.7229	0.722879	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	11	0											1						16.869	16.869	2	4.6078E-07	12182	DP690-11	164.81	121.5			NaN	NaN	NaN	0	0	Median	11360000	0	11360000	10907	1269	10155	21338	51788	51788		1	9606
NNFCGVGICYGSMNR	0	1	Oxidation (M)	1763.7178	0.71779362	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	1	0	9.5	3.2				1							2	1					15.797	15.797	2	0.00027502	10134	DP690-12	119.39	115.21			1.129	1.3243	5.3024	2	0	Median	64211000	31356000	32855000	10908	1269	10155	21339;21340;21341;21342	51789;51790;51791;51792;51793;51794;51795;51796	51791	1940	8	9606
NNFLPNADMETR	0	1	Oxidation (M)	1436.6354	0.63542742	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	1	0	2	0		1															14.681	14.681	2	0.0011762	7347	DP690-2	108.47	78.919			1.1588	1.213	NaN	1	0	Median	6548600	2794600	3754100	10909	1803	10156	21343	51797;51798;51799;51800	51798	2379	4	9606
NNGAGYFLEHLAFK	1	0	Unmodified	1579.7783	0.77832691	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	13	0													2				19.416	19.416	2;3	7.0947E-06	14620	DP690-13	142.12	122.94			0.81888	0.86803	1.7047	2	0	Median	1524499999.9999998	812580000	711900000	10910	637	10157	21344;21345	51801;51802;51803;51804;51805;51806;51807;51808	51808		8	9606
NNIDVCPECGHLK	1	0	Unmodified	1554.6919	0.69189644	2048	Q9BYC8	MRPL32	39S ribosomal protein L32, mitochondrial	yes	yes	0	0	0	16	0																1	12.744	12.744	2	0.0097096	5469	DP690-16	104.82	61.312			NaN	NaN	NaN	0	0	Median	3850100	0	3850100	10911	2048	10158	21346	51809;51810	51810		2	9606
NNIFEESYR	0	1	Unmodified	1170.5306	0.53055165	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	3	0			1														15.852	15.852	2	0.0007509	9780	DP690-3	136.27	104.74			1.1055	1.2521	NaN	1	0	Median	28546000	14134000	14411000	10912	1911	10159	21347	51811;51812;51813;51814	51812		4	9606
NNIFEESYRR	0	2	Unmodified	1326.6317	0.63166267	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	1	3	0			1														13.83	13.83	2	0.0042477	7118	DP690-3	102.51	58.196			1.1795	1.2202	NaN	1	0	Median	17646000	7796200	9850000	10913	1911	10160	21348	51815;51816;51817	51816		3	9606
NNIIQTWR	0	1	Unmodified	1043.5512	0.55122751	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3	0			1														15.667	15.667	2	0.054193	9494	DP690-3	113.41	88.593			0.83628	0.943	NaN	1	0	Median	31013000	16698000	14315000	10914	720	10161	21349	51818	51818		0	9606
NNISSGHVPHGPLTRPSEQLDYLSR	0	2	Unmodified	2773.3896	0.38958849	340	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	1	12	0												1					14.69	14.69	4	0.076175	8634	DP690-12	29.158	17.527			0.79116	0.89704	NaN	1	0	Median	43335000	24966000	18369000	10915	340	10162	21350	51819	51819		1	9606
NNLAGAEELFAR	0	1	Unmodified	1303.6521	0.65206377	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	7	3.56		1							1	1							18.151	18.151	2	5.4524E-05	11440	DP690-2	128.91	81.719			0.89904	1.0683	61.86	3	0	Median	255830000	131480000	124350000	10916	1075	10163	21351;21352;21353	51820;51821;51822;51823;51824;51825;51826;51827;51828	51827		9	9606
NNLEALLQDLR	0	1	Unmodified	1297.699	0.69901396	1601	Q8IV63	VRK3	Inactive serine/threonine-protein kinase VRK3	yes	yes	0	0	0	12	0												1					21.87	21.87	2	9.4682E-05	18104	DP690-12	147.95	68.799			0.75381	0.91897	NaN	1	0	Median	7887300	3191400	4695900	10917	1601	10164	21354	51829;51830;51831;51832;51833	51830		5	9606
NNNIDAAIENIENMLTSENK	1	0	Oxidation (M)	2262.0434	0.043404317	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	1	0	10	0										2							23.184	23.184	2	3.7249E-14	20899	DP690-10	193.45	193.45			1.1268	1.3659	11.955	2	0	Median	21698000	11502000	10196000	10918	732	10165	21355;21356	51834;51835;51836;51837;51838;51839	51835	1078	6	9606
NNNIDAAIENIENMLTSENK	1	0	Unmodified	2246.0485	0.048489695	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10	0										1							25.118	25.118	2	0.016553	23235	DP690-10	95.981	56.555			NaN	NaN	NaN	0	0	Median	0	0	0	10919	732	10165	21357	51840	51840		1	9606
NNNQQLAQLQK	1	0	Unmodified	1297.6739	0.67386184	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	9	3.46			1								3						11.952	11.952	2	0.00031799	4513	DP690-3	161.02	108.23			0.86489	0.92244	NaN	1	0	Median	26060000	14737000	11323000	10920	2437	10166	21358;21359;21360;21361	51841;51842;51843;51844;51845	51845		5	9606
NNPGQAQQTGLATNTER	0	1	Unmodified	1798.8558	0.85580196	1449	Q5VYV7	SLX4IP	Protein SLX4IP	yes	yes	0	0	0	13	0													1				11.112	11.112	2	6.8189E-18	3521	DP690-13	277.06	256.03			0.74901	0.8999	NaN	1	0	Median	7681300	3806000	3875300	10921	1449	10167	21362	51846;51847;51848;51849;51850	51847		5	9606
NNQFQALLQYADPVNAHYAK	1	0	Unmodified	2304.1287	0.12872935	338	O95758	PTBP3	Polypyrimidine tract-binding protein 3	yes	yes	0	0	0	13	0													1				20.179	20.179	3	0.015986	15720	DP690-13	76.068	45.93			NaN	NaN	NaN	0	0	Median	11866000	0	11866000	10922	338	10168	21363	51851	51851		1	9606
NNQFQALLQYADPVSAQHAK	1	0	Unmodified	2242.1131	0.11307928	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	11.5	2.25				1					1			10	2	1			21.76	21.76	2;3	7.4567E-32	15505	DP690-12	335.1	335.1			0.77686	0.88983	30.25	12	0	Median	2804000000	1560899999.9999998	1243100000	10923	595	10169	21364;21365;21366;21367;21368;21369;21370;21371;21372;21373;21374;21375;21376;21377;21378	51852;51853;51854;51855;51856;51857;51858;51859;51860;51861;51862;51863;51864;51865;51866;51867;51868;51869;51870;51871;51872;51873;51874;51875;51876;51877;51878;51879;51880;51881;51882;51883;51884;51885;51886;51887;51888;51889;51890	51858		39	9606
NNQLYPGESFAHSIK	1	0	Unmodified	1703.8267	0.82673367	136	O15091	KIAA0391	Mitochondrial ribonuclease P protein 3	yes	yes	0	0	0	12	0												1					15.304	15.304	2	0.025473	9439	DP690-12	100.69	27.187			NaN	NaN	NaN	0	0	Median	0	0	0	10924	136	10170	21379	51891	51891		1	9606
NNRPSEGPLQTR	0	2	Unmodified	1367.6906	0.69057454	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	6	4		1								1							10.427	10.427	2;3	0.00019402	2434	DP690-2	112.5	85.787			1.2898	1.2882	NaN	1	0	Median	82303000	59659000	22644000	10925	1075	10171	21380;21381	51892;51893;51894;51895	51893		4	9606
NNSELLNNLGNFINR	0	1	Unmodified	1730.87	0.86999547	905	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	7	4			1								1						20.79	20.79	2	1.7804E-15	16033	DP690-3	243.13	188.79			0.91958	1.08	26.87	2	0	Median	36939000	19491000	17449000	10926	905	10172	21382;21383	51896;51897;51898;51899;51900	51897		5	9606
NNSFVNEIISR	0	1	Unmodified	1291.6521	0.65206377	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	11	0											2						18.167	18.167	2	5.3373E-05	13925	DP690-11	183.72	132.53			NaN	NaN	NaN	0	0	Median	0	0	0	10927	736	10173	21384;21385	51901;51902	51901		2	9606
NNSGEEFDCAFR	0	1	Unmodified	1444.5677	0.56774179	1141	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	3	0			1														15.674	15.674	2	0.0056947	9660	DP690-3	83.869	63.035			1.4032	1.5898	NaN	1	0	Median	10454000	4626600	5827800	10928	1141	10174	21386	51903	51903		1	9606
NNSLQTATENTQAR	0	1	Unmodified	1546.7336	0.73356156	1432	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	10	0										1							11.583	11.583	2	0.0012003	4543	DP690-10	173.76	129.12			NaN	NaN	NaN	0	0	Median	0	0	0	10929	1432	10175	21387	51904	51904		1	9606
NNSNDIVNAIMELTM	0	0	2 Oxidation (M)	1709.76	0.76003559	59	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	2	0	14	0														1			25.199	25.199	2	0.0071103	21718	DP690-14	100.69	69.501			NaN	NaN	NaN	0	0	Median	0	0	0	10930	59	10176	21388	51905	51905	64;65	1	9606
NNTALQSVSLR	0	1	Unmodified	1201.6415	0.64149908	1800	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	11	0											1						14.514	14.514	2	0.030394	8673	DP690-11	93.667	23.268			NaN	NaN	NaN	0	0	Median	0	0	0	10931	1800	10177	21389	51906	51906		1	9606
NNTQVLINCR	0	1	Unmodified	1230.6139	0.61390412	980	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	16	0																1	12.956	12.956	2	4.6763E-05	5813	DP690-16	230.59	179.88			0.8773	0.96228	NaN	1	0	Median	110520000	58389000	52133000	10932	980	10178	21390	51907;51908;51909;51910	51910		4	9606
NNWEVSALSR	0	1	Unmodified	1174.5731	0.57308516	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							16.176	16.176	2	6.8727E-05	9985	DP690-9	166.09	137.87			0.77539	0.91119	2.2188	2	0	Median	266940000	144610000	122320000	10933	1046	10179	21391;21392	51911;51912;51913;51914	51913		4	9606
NPAEPIAVQNNQQLALK	1	0	Unmodified	1846.9901	0.9901106	2233	Q9NVH2	INTS7	Integrator complex subunit 7	yes	yes	0	0	0	11	0											1						15.884	15.884	2	0.0063726	10680	DP690-11	130.69	49.815			NaN	NaN	NaN	0	0	Median	0	0	0	10934	2233	10180	21393	51915	51915		1	9606
NPAPPIDAVEQILPTLVR	0	1	Unmodified	1942.0888	0.088762013	850	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	12	0												1					23.793	23.793	2	4.0719E-06	20315	DP690-12	130.19	130.19			0.5941	0.72682	NaN	1	0	Median	2482300	1427500	1054800	10935	850	10181	21394	51916;51917;51918;51919;51920	51920		5	9606
NPATTNQTEFER	0	1	Unmodified	1406.6426	0.64262129	824	P50750	CDK9	Cyclin-dependent kinase 9	yes	yes	0	0	0	8.67	3.77						2								1			11.888	11.888	2	1.4655E-08	4546	DP690-14	211.78	162.36			1.0574	1.2791	NaN	1	0	Median	50300000	21518000	28782000	10936	824	10182	21395;21396;21397	51921;51922;51923;51924	51921		4	9606
NPAVQAGSIVVLQGGEETQR	0	1	Unmodified	2052.06	0.05998108	478	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	4	0				1													16.894	16.894	2	2.9255E-31	10987	DP690-4	247.11	247.11			0.76438	0.88567	NaN	1	0	Median	5237100	2763500	2473500	10937	478	10183	21398	51925;51926;51927;51928	51925		4	9606
NPAVQFLYQK	1	0	Unmodified	1206.6397	0.63970816	292	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	2	0		1															16.62	16.62	2	0.010865	9634	DP690-2	82.452	51.882			1.5154	1.5015	NaN	1	0	Median	3058800	1191300	1867600	10938	292	10184	21399	51929	51929		1	9606
NPCHLYIVEILER	0	1	Unmodified	1654.8501	0.85011165	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								19.533	19.533	3	0.030452	14307	DP690-9	54.094	22.386			1.0196	1.2734	NaN	1	0	Median	3911600	1825100	2086500	10939	1453	10185	21400	51930	51930		1	9606
NPDDITNEEYGEFYK	1	0	Unmodified	1832.7741	0.77408897	409	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	3	0			1														17.465	17.465	2	6.0221E-31	11971	DP690-3	317.81	317.81			1.3694	1.4457	NaN	1	0	Median	38591000	16126000	22465000	10940	409	10186	21401	51931;51932;51933;51934;51935	51935		5	9606
NPDDITQEEYGEFYK	1	0	Unmodified	1846.7897	0.78973904	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	5.83	3.67			3	1							2						17.7	17.7	2	8.6625E-42	13333	DP690-11	273.24	202.84			0.88813	0.91986	4.3502	2	0	Median	602460000	303080000	299380000	10941	416	10187	21402;21403;21404;21405;21406;21407	51936;51937;51938;51939;51940;51941;51942;51943;51944;51945;51946;51947;51948;51949	51939		14	9606
NPDQVYLADYGLSYR	0	1	Unmodified	1772.837	0.836964	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	12.5	0.5												1	1				19.029	19.029	2	1.5274E-15	14635	DP690-12	253.54	230.99			0.71915	0.8604	22.87	2	0	Median	118230000	69034000	49194000	10942	1589	10188	21408;21409	51950;51951;51952	51950		3	9606
NPEILAIAPVLLDALTDPSR	0	1	Unmodified	2117.1732	0.17321992	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10.2	0.748									1	2	2						26.83	26.83	2	1.3734E-23	25033	DP690-10	227.47	227.47			0.67156	0.84245	0.64609	2	0	Median	17335000	10116000	7218600	10943	1782	10189	21410;21411;21412;21413;21414	51953;51954;51955;51956;51957;51958;51959;51960;51961;51962;51963;51964;51965;51966;51967;51968	51958		16	9606
NPEILAIAPVLLDALTDPSRK	1	1	Unmodified	2245.2682	0.26818294	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	10	0										1							24.784	24.784	3	0.057479	22851	DP690-10	87.793	56.93			NaN	NaN	NaN	0	0	Median	0	0	0	10944	1782	10190	21415	51969	51969		1	9606
NPELSTQLIDIIHTAAAR	0	1	Unmodified	1962.0534	0.053439139	2253	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	11	0											1						21.232	21.232	3	0.00029751	18370	DP690-11	92.096	65.734			0.82684	0.99319	NaN	1	0	Median	26326000	13294000	13033000	10945	2253	10191	21416	51970	51970		1	9606
NPEPELLVR	0	1	Unmodified	1065.5819	0.58185894	1288	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	3	0			1														15.432	15.432	2	0.0045934	9348	DP690-3	101.43	68.618			1.0877	1.2474	NaN	1	0	Median	15596000	7992700	7603000	10946	1288	10192	21417	51971;51972	51972		2	9606
NPEQVDLYQFMAK	1	0	Oxidation (M)	1597.7446	0.74464352	905	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	3	0			1														17.239	17.239	2	0.00012048	11600	DP690-3	158.08	134.57			1.0825	1.162	NaN	1	0	Median	16190000	8408300	7781600	10947	905	10193	21418	51973;51974;51975;51976	51973	1401	4	9606
NPETCQLFTTELGR	0	1	Unmodified	1664.7828	0.78281994	443	Q8N7N1;Q96G04;P0C5J1	FAM86B1;EEF2KMT;FAM86B2	Putative protein N-methyltransferase FAM86B1;Protein-lysine N-methyltransferase EEF2KMT;Putative protein N-methyltransferase FAM86B2	yes	no	0	0	0	6	0						1											18.085	18.085	2	2.5977E-05	11780	DP690-6	174.42	147.63			0.6776	0.76746	NaN	1	0	Median	4017800	1906500	2111300	10948	443	10194	21419	51977	51977		1	9606
NPEVEFCGYTTTHPSESK	1	0	Unmodified	2081.9	0.90003454	451	P0DPB6			yes	yes	0	0	0	16	0																1	14.232	14.232	3	4.3597E-11	7566	DP690-16	161.26	133.75			0.85357	0.99892	NaN	1	0	Median	16638000	8315900	8321800	10949	451	10195	21420	51978;51979;51980	51978		3	9606
NPEVGLKPVWYSPK	2	0	Unmodified	1612.8613	0.86132826	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	2	0		1															16.125	16.125	3	0.0012559	9047	DP690-2	87.863	67.436			0.90164	0.93601	NaN	1	0	Median	4834800	2423100	2411700	10950	408	10196	21421	51981;51982	51981		2	9606
NPFGNAGLLLGEAGK	1	0	Unmodified	1456.7674	0.76742787	800	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				3													19.683	19.683	2	2.1772E-05	14365	DP690-4	164.48	164.48			NaN	NaN	NaN	0	0	Median	20053000	8548900	11504000	10951	800	10197	21422;21423;21424	51983;51984;51985;51986;51987	51984		4	9606
NPGFEIIHGLLDR	0	1	Unmodified	1479.7834	0.78341229	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	8.83	3.58				2					1			3					20.023	20.023	2;3	8.7135E-11	15759	DP690-12	215.04	178.72			0.70107	0.7951	22.148	6	0	Median	576170000	302160000	274010000	10952	2210	10198	21425;21426;21427;21428;21429;21430	51988;51989;51990;51991;51992;51993;51994;51995;51996;51997;51998;51999;52000;52001;52002;52003;52004	51990		17	9606
NPGVWLNTTQPLCK	1	0	Unmodified	1626.8188	0.81881152	346	O95983	MBD3	Methyl-CpG-binding domain protein 3	yes	yes	0	0	0	14	0														1			17.357	17.357	2	0.060391	12135	DP690-14	86.911	49.214			NaN	NaN	NaN	0	0	Median	0	0	0	10953	346	10199	21431	52005	52005		1	9606
NPGYPQSEGLLGECMIR	0	1	Oxidation (M)	1935.8819	0.88188206	1964	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	1	0	5	0					1												17.006	17.006	2	0.013295	10584	DP690-5	96.64	49.934			NaN	NaN	NaN	0	0	Median	10265000	10265000	0	10954	1964	10200	21432	52006;52007	52007	2510	2	9606
NPHAPTIHFNYR	0	1	Unmodified	1465.7215	0.72148073	680	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	6	0						1											13.164	13.164	3	0.010024	5850	DP690-6	67.879	45.405			0.68281	0.75618	NaN	1	0	Median	35959000	21429000	14530000	10955	680	10201	21433	52008;52009;52010;52011	52010		4	9606
NPHPSSAFLNLIGFVSR	0	1	Unmodified	1854.9741	0.97406661	868	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	6	0						1											21.364	21.364	3	0.00043478	15584	DP690-6	90.385	90.385			0.84524	0.96144	NaN	1	0	Median	4677800	2485500	2192300	10956	868	10202	21434	52012;52013;52014;52015	52013		4	9606
NPIHAIGLLIR	0	1	Unmodified	1215.7452	0.74517629	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	10.5	0.5										1	1						17.557	17.557	3	0.0059873	13136	DP690-10	73.499	65.695			0.73868	0.91356	NaN	1	0	Median	118030000	59126000	58903000	10957	1156	10203	21435;21436	52016;52017;52018;52019;52020	52018		5	9606
NPIMSQCFDR	0	1	Oxidation (M)	1282.5434	0.54344129	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	1	0	11	0											1						13.259	13.259	2	0.085105	6835	DP690-11	63.816	48.556			0.86695	1.0352	NaN	1	0	Median	31685000	16488000	15197000	10958	65	10204	21437	52021	52021		1	9606
NPISGLLEYAQFASQTCEFNMIEQSGPPHEPR	0	1	Oxidation (M)	3662.677	0.67698125	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	11	0											1						22.683	22.683	3	4.4944E-50	20067	DP690-11	214.11	203.99			0.4971	0.59585	NaN	1	0	Median	57954000	36938000	21017000	10959	897	10205	21438	52022;52023;52024;52025;52026;52027	52023	1393	6	9606
NPISGLLEYAQFASQTCEFNMIEQSGPPHEPR	0	1	Unmodified	3646.6821	0.68206662	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						23.593	23.593	3	6.5457E-39	21199	DP690-11	200.52	200.52			0.5343	0.63757	NaN	1	0	Median	35697000	22897000	12800000	10960	897	10205	21439	52028;52029;52030;52031;52032;52033;52034	52030		7	9606
NPKDPESNINSDNEK	2	0	Unmodified	1699.7649	0.76492127	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	1	11	0											1						10.386	10.386	3	0.016022	2682	DP690-11	51.004	36.008			0.59204	0.67239	NaN	1	0	Median	141110000	89642000	51467000	10961	2105	10206	21440	52035	52035		1	9606
NPLPPSVGVVDKK	2	0	Unmodified	1348.7715	0.77145062	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	13	0													1				12.875	12.875	3	7.9347E-05	5769	DP690-13	115.34	85.537			0.39023	0.43702	NaN	1	0	Median	71069000	52771000	18298000	10962	1678	10207	21441	52036;52037;52038	52038		3	9606
NPMVETLGTVLQLK	1	0	Oxidation (M)	1557.8436	0.84362928	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	1	0	4	0				1													19.421	19.421	2	5.6872E-06	14061	DP690-4	184.24	150.36			0.77432	0.84444	NaN	1	0	Median	19854000	11559000	8295300	10963	1120	10208	21442	52039;52040;52041;52042	52042	1737	4	9606
NPNELSVSANQK	1	0	Unmodified	1299.6419	0.64189301	1511	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	2	0		1															11.747	11.747	2	0.00059607	3886	DP690-2	109.66	75.478			1.3279	1.3074	NaN	1	0	Median	2218600	744750	1473900	10964	1511	10209	21443	52043;52044;52045;52046	52043		4	9606
NPNGPYPYTLK	1	0	Unmodified	1262.6295	0.62953741	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	10.5	1.5									1			1					14.707	14.707	2	8.0779E-05	8495	DP690-12	128.86	76.455			0.66644	0.7769	20.2	2	0	Median	417910000	262400000	155510000	10965	494	10210	21444;21445	52047;52048;52049;52050;52051;52052;52053	52047		7	9606
NPPEQLPIVLQVLLSQVHR	0	1	Unmodified	2179.2477	0.24772227	1638	Q8N122	RPTOR	Regulatory-associated protein of mTOR	yes	yes	0	0	0	10	0										1							24.508	24.508	3	0.00019742	22489	DP690-10	120.74	81.391			NaN	NaN	NaN	0	0	Median	776630	0	776630	10966	1638	10211	21446	52054	52054		1	9606
NPPGFAFVEFEDPR	0	1	Unmodified	1620.7573	0.75725712	1064;1362	P84103;Q16629	SRSF3;SRSF7	Serine/arginine-rich splicing factor 3;Serine/arginine-rich splicing factor 7	no	no	0	0	0	15	0															1		20.603	20.603	2	0.040945	15925	DP690-15	43.604	24.859			0.95095	1.1016	NaN	1	0	Median	5768800	3321900	2446800	10967	1064;1362	10212	21447	52055	52055		1	9606
NPPGFAFVEFEDPRDAADAVR	0	2	Unmodified	2319.092	0.09200949	1064	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	1	11.8	3.83							1		1						1	1	20.15	20.15	3	0.003763	15316	DP690-15	62.438	44.38			0.59898	0.64125	13.128	4	0	Median	46551000	28546000	18005000	10968	1064	10213	21448;21449;21450;21451	52056;52057;52058;52059;52060;52061;52062;52063;52064;52065;52066;52067;52068	52058		13	9606
NPPGFAFVEFEDPRDAEDAVR	0	2	Unmodified	2377.0975	0.097488798	1362	Q16629	SRSF7	Serine/arginine-rich splicing factor 7	yes	yes	0	0	1	9	0									1								20.091	20.091	3	0.0031363	14997	DP690-9	65.287	51.415			0.71088	0.77056	NaN	1	0	Median	10075000	6433600	3641100	10969	1362	10214	21452	52069;52070;52071	52071		3	9606
NPPNQSSNERPPSLLVIETK	1	1	Unmodified	2219.1546	0.15460975	133	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	1	11	0											1						15.708	15.708	3	0.037311	10519	DP690-11	45.221	25.08			0.55022	0.68367	NaN	1	0	Median	41861000	24224000	17637000	10970	133	10215	21453	52072	52072		1	9606
NPPPPINFQEWDGLVR	0	1	Unmodified	1877.9424	0.94243213	2408	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	14	0														1			21.17	21.17	2	6.09E-07	17034	DP690-14	151.13	107.5			0.72568	0.8927	NaN	1	0	Median	13820000	8626800	5192700	10971	2408	10216	21454	52073;52074	52073		2	9606
NPQAYLNYK	1	0	Unmodified	1109.5506	0.55055881	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										1							14.259	14.259	2	0.01041	8441	DP690-10	89.142	57.208			0.83584	1.0313	NaN	1	0	Median	103630000	61205000	42428000	10972	1158	10217	21455	52075	52075		1	9606
NPQMPQYSSPQPGSALSPR	0	1	Oxidation (M)	2056.9636	0.96363785	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	1	0	10	0										1							14.153	14.153	2	1.6026E-07	8272	DP690-10	175.01	123.28			NaN	NaN	NaN	0	0	Median	0	0	0	10973	103	10218	21456	52076	52076	113	1	9606
NPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQK	1	0	2 Oxidation (M)	4488.1914	0.19142932	471	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	2	0	4	0				1													14.918	14.918	4	5.5697E-07	8471	DP690-4	68.845	68.845			0.51591	0.56527	NaN	1	0	Median	16048000	10843000	5205400	10974	471	10219	21457	52077;52078;52079	52077	572;573	3	9606
NPSAAFFCVAR	0	1	Unmodified	1238.5866	0.58662674	244	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	7	0							1										17.156	17.156	2	0.0011834	11094	DP690-7	105.1	69.656			0.73908	0.8278	NaN	1	0	Median	35326000	16542000	18784000	10975	244	10220	21458	52080;52081	52081		2	9606
NPSNCYGEESNAVCEK	1	0	Unmodified	1856.7305	0.73052637	22	CON__ENSEMBL:ENSBTAP00000024146			yes	yes	0	0	0	4	0				1													12.232	12.232	2	1.2979E-07	4918	DP690-4	171.29	157.28		+	NaN	NaN	NaN	0	0	Median	1627200	1627200	0	10976	22	10221	21459	52082;52083	52083		2	
NPSTSLGPTLEPEEVVNR	0	1	Unmodified	1937.9694	0.96943474	1674	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	yes	yes	0	0	0	15	0															1		17.205	17.205	2	4.0030999999999996E-22	11678	DP690-15	214.48	167.75			0.45965	0.53001	NaN	1	0	Median	7873600	5165800	2707800	10977	1674	10222	21460	52084;52085;52086	52085		3	9606
NPSTVCLCPEQPTCSNADSR	0	1	Unmodified	2291.9569	0.95691427	2132	Q9H7E9	C8orf33	UPF0488 protein C8orf33	yes	yes	0	0	0	15	0															1		14.302	14.302	2	2.4994E-98	7777	DP690-15	391.93	373.52			0.63017	0.7313	NaN	1	0	Median	20083000	12577000	7506900	10978	2132	10223	21461	52087;52088;52089;52090;52091;52092	52091		6	9606
NPSTVEAFDLAQSNSEHSR	0	1	Unmodified	2087.9508	0.95082456	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	3	0			1														15.118	15.118	3	6.7872E-23	8766	DP690-3	216.72	197.78			0.83092	0.9145	NaN	1	0	Median	49165000	26800000	22365000	10979	134	10224	21462	52093;52094;52095;52096;52097;52098	52096		6	9606
NPTDAYLDAMMNEAPGPINFTMFLTMFGEK	1	0	4 Oxidation (M)	3429.4913	0.49133723	123	O14950	MYL12B	Myosin regulatory light chain 12B	yes	yes	0	4	0	16	0																1	24.741	24.741	3	0.041954	19601	DP690-16	41.205	32.452			NaN	NaN	NaN	0	0	Median	502390	502390	0	10980	123	10225	21463	52099	52099	136;137;138;139	1	9606
NPTIVNFPITNVDLR	0	1	Unmodified	1711.9257	0.92571943	1404	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	12	0												1					20.477	20.477	2	1.6772E-05	16467	DP690-12	148.78	125.41			0.40502	0.48639	NaN	1	0	Median	19355000	13589000	5766400	10981	1404	10226	21464	52100;52101;52102;52103;52104	52100		5	9606
NQAAIQGRPPYAASAEEVAK	1	1	Unmodified	2070.0494	0.049416394	2271	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	1	7	4			1								1						13.453	13.453	3	0.00066397	7136	DP690-11	83.37	83.37			0.8863	1.0211	14.64	2	0	Median	82095000	43054000	39041000	10982	2271	10227	21465;21466	52105;52106;52107;52108;52109	52105		5	9606
NQALFPACVLK	1	0	Unmodified	1259.6696	0.66962808	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	11	0											1						18.192	18.192	2	0.010196	13938	DP690-11	78.113	49.714			0.65489	0.78901	NaN	1	0	Median	90944000	55220000	35724000	10983	1768	10228	21467	52110;52111;52112;52113;52114	52111		5	9606
NQDATVYVGGLDEK	1	0	Unmodified	1507.7155	0.71545188	1331	Q15427	SF3B4	Splicing factor 3B subunit 4	yes	yes	0	0	0	13	0													1				15.461	15.461	2	7.8028E-05	9377	DP690-13	155.99	123.57			0.79265	0.91706	NaN	1	0	Median	50717000	30686000	20031000	10984	1331	10229	21468	52115;52116;52117;52118	52117		4	9606
NQDECIVALHDCNGDVNK	1	0	Unmodified	2099.9001	0.90005132	1439	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	10.5	0.5										1	1						13.769	13.769	3	0.00018008	7688	DP690-10	101.04	76.324			0.98168	1.1961	0.99375	2	0	Median	93964000	41730000	52233000	10985	1439	10230	21469;21470	52119;52120;52121;52122	52119		4	9606
NQDEESQEAPELLK	1	0	Unmodified	1628.753	0.7529596	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	7.67	3.4			1						1		1						14.963	14.963	2	1.1961999999999998E-19	9276	DP690-11	294.49	240.9			0.85328	0.97519	8.3472	3	0	Plateau	114770000	57717000	57057000	10986	1687	10231	21471;21472;21473	52123;52124;52125;52126;52127;52128;52129;52130;52131;52132;52133;52134	52123		12	9606
NQDETEDTELQGMNEYLSSFK	1	0	Unmodified	2477.054	0.054028583	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	10	0										1							21.596	21.596	2	3.2499E-06	18920	DP690-10	130.47	122.49			0.69316	0.84133	NaN	1	0	Median	15870000	9688100	6181800	10987	1297	10232	21474	52135;52136;52137	52135		3	9606
NQDETEDTELQGMNEYLSSFK	1	0	Oxidation (M)	2493.0489	0.048943205	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	0	10	0										1							18.293	18.293	2	3.2098E-13	14263	DP690-10	185.74	162.25			NaN	NaN	NaN	0	0	Median	0	0	0	10988	1297	10232	21475	52138	52138	1984	1	9606
NQDLAPNSAEQASILSLVTK	1	0	Unmodified	2098.0906	0.090612506	1169	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	13.5	0.5													1	1			20.903	20.903	2	1.2023E-13	16653	DP690-14	181.58	146.82			0.68253	0.80542	25.267	2	0	Median	133400000	74286000	59114000	10989	1169	10233	21476;21477	52139;52140;52141;52142	52140		4	9606
NQDVSISNVQPK	1	0	Unmodified	1327.6732	0.67319314	1847	Q96EV2	RBM33	RNA-binding protein 33	yes	yes	0	0	0	10	0										1							13.171	13.171	2	0.073822	6847	DP690-10	82.417	36.819			NaN	NaN	NaN	0	0	Median	22744000	22744000	0	10990	1847	10234	21478	52143	52143		1	9606
NQENGPVCSLR	0	1	Unmodified	1272.5881	0.5880833	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	0	12	0												1					12.099	12.099	2	0.0055668	4887	DP690-12	117.31	56.914			NaN	NaN	NaN	0	0	Median	17785000	0	17785000	10991	2521	10235	21479	52144;52145	52145		2	9606
NQGDEEGTEIDTLQFR	0	1	Unmodified	1850.8282	0.82824981	142	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	0	0	14	0														2			17.612	17.612	2	1.1409E-35	12478	DP690-14	236.08	203.04			NaN	NaN	NaN	0	0	Median	14892000	0	14892000	10992	142	10236	21480;21481	52146;52147;52148;52149	52146		4	9606
NQGFDVVLVDTAGR	0	1	Unmodified	1489.7525	0.75250609	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	12	0												1					18.722	18.722	2	3.0103E-05	14062	DP690-12	155.47	103.31			0.85349	1.0138	NaN	1	0	Median	71983000	37280000	34703000	10993	417	10237	21482	52150;52151;52152	52150		3	9606
NQGGGLSSSGAGEGQGPK	1	0	Unmodified	1586.7285	0.72847619	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	5.33	4.03		1	1								1						10.457	10.457	2	6.4352E-33	2512	DP690-2	265.75	234.11			0.99499	1.0377	2.8758	2	0	Median	50641000	24628000	26012000	10994	408	10238	21483;21484;21485	52153;52154;52155;52156;52157;52158	52154		6	9606
NQGGYGGSSSSSSYGSGRRF	0	2	Unmodified	1996.8623	0.8623439	437	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	2	14	0														1			11.726	11.726	3	0.0008995	4391	DP690-14	82.349	73.029			0.98372	1.156	NaN	1	0	Median	39771000	20168000	19603000	10995	437	10239	21486	52159;52160	52159		2	9606
NQILNLTTDNANILLQIDNAR	0	1	Unmodified	2366.2554	0.25538642	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	9	0									1								22.336	22.336	2	6.9444E-16	17587	DP690-9	176.32	126.99		+	NaN	NaN	NaN	0	0	Median	2211600	2211600	0	10996	42	10240	21487	52161;52162	52161		2	9606
NQLETAPPHELK	1	0	Unmodified	1375.7096	0.70957864	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															11.794	11.794	3	3.5956E-05	4013	DP690-2	128.08	114.65			0.84591	0.85431	NaN	1	0	Median	17378000	9809400	7568600	10997	2418	10241	21488	52163;52164;52165;52166	52165		4	9606
NQLSALPPELGNLR	0	1	Unmodified	1520.8311	0.83109076	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							18.848	18.848	2	0.004186	15141	DP690-10	120.96	85.546			NaN	NaN	NaN	0	0	Median	30225000	0	30225000	10998	1254	10242	21489	52167	52167		1	9606
NQLSPQLLR	0	1	Unmodified	1067.6087	0.60874239	268	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	14	0														1			15.103	15.103	2	0.0014839	9004	DP690-14	120.62	57.141			0.84271	1.002	NaN	1	0	Median	115180000	62131000	53051000	10999	268	10243	21490	52168;52169;52170;52171	52168		4	9606
NQLTSNPENTVFDAK	1	0	Unmodified	1676.8006	0.8005785	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	9.75	3.34				1							1	2					15.913	15.913	2	9.5822E-16	9700	DP690-4	234.3	161.69			1.4638	1.5259	NaN	1	0	Median	261800000	141630000	120170000	11000	462	10244	21491;21492;21493;21494	52172;52173;52174;52175;52176;52177;52178;52179;52180;52181;52182	52181		11	9606
NQLTSNPENTVFDAKR	1	1	Unmodified	1832.9017	0.90168952	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	4	0				1													14.302	14.302	3	4.1104E-12	7594	DP690-4	178.23	128.01			NaN	NaN	NaN	0	0	Median	12381000	0	12381000	11001	462	10245	21495	52183;52184	52183		2	9606
NQMGQVEIEDQVEGLQFVAEK	1	0	Oxidation (M)	2406.1373	0.1373047	1564	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	1	0	3	0			2														19.875	19.875	2	1.8556E-57	14970	DP690-3	275.83	192.63			NaN	NaN	NaN	0	0	Median	2628100	0	2628100	11002	1564	10246	21496;21497	52185;52186	52186	2239	2	9606
NQMQEQLDHLGEVQTESAGIQR	0	1	Oxidation (M)	2526.1769	0.17687811	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	1	0	10	0										1							15.227	15.227	3	7.6846E-05	9856	DP690-10	117.03	96.948			0.80479	1.0024	NaN	1	0	Median	76374000	42939000	33435000	11003	2155	10247	21498	52187;52188;52189;52190	52188	2643	4	9606
NQNDPLPGR	0	1	Unmodified	1009.4941	0.49410656	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	3	0			1														11.206	11.206	2	0.0059872	3680	DP690-3	95.815	39.268			1.0118	1.1546	NaN	1	0	Median	13162000	5839400	7323100	11004	264	10248	21499	52191;52192;52193	52192		3	9606
NQNSWGTGEDVK	1	0	Unmodified	1333.5899	0.58985744	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					12.53	12.53	2	0.00016416	5420	DP690-12	137.46	105.97			0.81284	0.94485	NaN	1	0	Median	106160000	57747000	48417000	11005	544	10249	21500	52194;52195;52196;52197	52194		4	9606
NQPIYIQYSNHK	1	0	Unmodified	1503.747	0.74702678	2368	Q9UKA9	PTBP2	Polypyrimidine tract-binding protein 2	yes	yes	0	0	0	12	0												1					13.221	13.221	3	0.0010571	6473	DP690-12	99.752	49.268			NaN	NaN	NaN	0	0	Median	60667000	60667000	0	11006	2368	10250	21501	52198;52199	52198		2	9606
NQPTNVTLSSGFVADR	0	1	Unmodified	1704.8431	0.84311201	1943	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	11	0											1						16.335	16.335	2	0.055239	11311	DP690-11	55.291	19.75			2.4003	2.8683	NaN	1	0	Median	48510000	16148000	32362000	11007	1943	10251	21502	52200	52200		1	9606
NQQASAQGPQMQGSTQK	1	0	Unmodified	1787.8221	0.82205899	1042	P78364	PHC1	Polyhomeotic-like protein 1	yes	yes	0	0	0	11	0											1						10.436	10.436	2	1.6416E-17	2708	DP690-11	225.97	177.99			NaN	NaN	NaN	0	0	Median	0	0	0	11008	1042	10252	21503	52201	52201		1	9606
NQQITHANNTVSNFK	1	0	Unmodified	1714.8387	0.83869534	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	5.67	3.77			2								1						11.37	11.37	2;3	1.6149E-15	3854	DP690-3	241.35	204.17			1.1577	1.2132	24.932	3	0	Median	75664000	33877000	41787000	11009	1778	10253	21504;21505;21506	52202;52203;52204;52205;52206;52207;52208;52209	52209		8	9606
NQSETLNWLSNAIK	1	0	Unmodified	1616.8158	0.81583463	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							20.374	20.374	2	0.087491	17315	DP690-10	62.799	24.085			0.56753	0.6977	NaN	1	0	Median	47222000	23951000	23271000	11010	1240	10254	21507	52210	52210		1	9606
NQSFCPTVNLDK	1	0	Unmodified	1421.6609	0.66091389	756	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	12	4								1								1	15.412	15.412	2	3.6764E-05	9018	DP690-16	160.77	117.12			0.83189	0.88869	NaN	1	0	Median	192890000	102700000	90189000	11011	756	10255	21508;21509	52211;52212;52213;52214;52215;52216	52213		6	9606
NQSQGYNQWQQGQFWGQKPWSQHYHQGYY	1	0	Unmodified	3657.5987	0.59874642	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	11.3	0.471											2	1					29.056	29.056	4	0.00011417	13131	DP690-11	68.771	68.771			0.75818	0.90391	7.2992	3	0	Median	98083000	50221000	47862000	11012	1078	10256	21510;21511;21512	52217;52218;52219;52220;52221;52222	52217		6	9606
NQTAEKEEFEHQQKELEK	3	0	Unmodified	2244.0659	0.065854319	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	2	8	4				1								1					11.129	11.129	4	3.4417E-05	3527	DP690-4	125.33	97.165			1.3771	1.4456	53.003	2	0	Median	125980000	56440000	69540000	11013	463	10257	21513;21514	52223;52224;52225	52225		3	9606
NQVALNPQNTVFDAK	1	0	Unmodified	1657.8424	0.84238373	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	8	4				1								1					16.45	16.45	2	6.6635E-16	10375	DP690-4	231.17	180.38			1.0592	1.1538	42.752	2	0	Median	264830000	126000000	138830000	11014	449	10258	21515;21516	52226;52227;52228;52229;52230;52231;52232;52233	52230		8	9606
NQVAMNPTNTVFDAK	1	0	Unmodified	1648.7879	0.78790532	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	9.8	2.93				1							3	1					16.182	16.182	2	1.5594E-14	10192	DP690-4	221.6	186.84			1.2514	1.3514	50.344	2	0	Median	322050000	151760000	170300000	11015	463	10259	21517;21518;21519;21520;21521	52234;52235;52236;52237;52238;52239;52240;52241;52242;52243;52244;52245	52245		12	9606
NQVAMNPTNTVFDAK	1	0	Oxidation (M)	1664.7828	0.78281994	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	9.46	4.77			1	3		1		1	1			2		1	1	2	14.944	14.944	2	7.5233E-10	8375	DP690-12	208.74	188.43			1.2446	1.36	37.41	6	0	Median	856870000	358890000	497970000	11016	463	10259	21522;21523;21524;21525;21526;21527;21528;21529;21530;21531;21532;21533;21534	52246;52247;52248;52249;52250;52251;52252;52253;52254;52255;52256;52257;52258;52259;52260;52261;52262;52263;52264;52265;52266;52267;52268;52269;52270;52271;52272;52273;52274;52275;52276;52277;52278;52279;52280	52248	546	35	9606
NQVAMNPTNTVFDAKR	1	1	Oxidation (M)	1820.8839	0.88393097	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	4	0				1													13.177	13.177	3	0.039183	5929	DP690-4	42.818	16.873			1.9695	2.2463	NaN	1	0	Median	20507000	6710600	13796000	11017	463	10260	21535	52281	52281	546	1	9606
NQVLPLSDVDTTSATDIQR	0	1	Unmodified	2072.0386	0.038576936	2268	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	12	0												1					17.929	17.929	2	3.7093E-33	13071	DP690-12	265.77	235.21			0.6925	0.82834	NaN	1	0	Median	27825000	17560000	10265000	11018	2268	10261	21536	52282;52283;52284	52283		3	9606
NQVLVFVHSR	0	1	Unmodified	1197.6618	0.66184059	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							14.248	14.248	3	0.001462	8436	DP690-10	91.658	91.658			1.2405	1.4943	NaN	1	0	Median	190880000	81075000	109810000	11019	269	10262	21537	52285;52286;52287	52287		3	9606
NQVTQLKEQVPGFTPR	1	1	Unmodified	1840.9795	0.97954591	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	11	0											1						15.529	15.529	3	0.018134	10153	DP690-11	56.514	56.514			0.5316	0.6389	NaN	1	0	Median	67414000	42535000	24879000	11020	470	10263	21538	52288	52288		1	9606
NQWQLSADDLKK	2	0	Unmodified	1444.731	0.73104237	436	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	1	13	0													1				14.95	14.95	3	0.060827	8683	DP690-13	62.14	30.298			NaN	NaN	NaN	0	0	Median	8766400	8766400	0	11021	436	10264	21539	52289	52289		1	9606
NQYDNDVTVWSPQGR	0	1	Unmodified	1777.802	0.80197548	586	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	7	0							1										16.714	16.714	2	0.064132	10465	DP690-7	86.028	51.649			NaN	NaN	NaN	0	0	Median	0	0	0	11022	586	10265	21540	52290	52290		1	9606
NREELGFRPEYSASQLK	1	2	Unmodified	2023.0123	0.012302606	439	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	11	0											1						14.225	14.225	3	0.010796	8225	DP690-11	61.444	32.803			0.79392	0.87838	NaN	1	0	Median	105920000	48679000	57246000	11023	439	10266	21541	52291	52291		1	9606
NREPVQLETLSIR	0	2	Unmodified	1553.8526	0.85255449	979	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	0	1	16	0																2	15.678	15.678	2;3	4.0878E-05	9368	DP690-16	139.77	139.77			0.79026	0.83493	1.3217	2	0	Median	162470000	88896000	73571000	11024	979	10267	21542;21543	52292;52293;52294;52295;52296;52297;52298;52299	52295		8	9606
NRKDIENQYETQITQIEHEVSSSGQEVQSSAK	2	1	Unmodified	3661.7456	0.7455894	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	2	16	0																1	18.652	18.652	5	7.0877E-06	13146	DP690-16	87.671	63.633		+	NaN	NaN	NaN	0	0	Median	12415000	12415000	0	11025	667	10268	21544	52300;52301;52302	52302		3	9606
NRLENDGATALAEAFR	0	2	Unmodified	1746.8649	0.86491009	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	1	8	4				1								1					17.866	17.866	3	1.7098E-06	12982	DP690-12	121.32	90.582			0.464	0.50574	64.656	2	0	Median	174390000	97052000	77337000	11026	750	10269	21545;21546	52303;52304;52305;52306;52307	52304		5	9606
NRPDYVSEEEEDDEDFETAVK	1	1	Unmodified	2515.0511	0.051051695	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	1	9.5	0.5									1	1							16.373	16.373	3	8.7948E-17	11562	DP690-10	149.67	139.17			0.74545	0.86458	NaN	1	0	Median	68005000	62348000	5656500	11027	808	10270	21547;21548	52308;52309;52310;52311;52312	52309		5	9606
NRPGLSYHYAHSHLAEEEGEDKEDSQPPTPVSQR	1	2	Unmodified	3859.7786	0.77862086	1789	Q92785	DPF2	Zinc finger protein ubi-d4	yes	yes	0	0	2	13	0													1				12.553	12.553	5	5.3762E-08	5308	DP690-13	91.064	85.366			0.56064	0.63455	NaN	1	0	Median	39628000	27548000	12081000	11028	1789	10271	21549	52313;52314;52315	52313		3	9606
NRPGSALEKEVESMGAHLNAYSTR	1	2	Oxidation (M)	2632.2664	0.26636182	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	1	2	13	0													1				14.916	14.916	4	0.00022397	8621	DP690-13	103.92	55.542			0.7548	0.83238	NaN	1	0	Median	157400000	91489000	65915000	11029	637	10272	21550	52316;52317	52317	879	2	9606
NRPGSALEKEVESMGAHLNAYSTR	1	2	Unmodified	2616.2714	0.27144719	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	2	13	0													1				17.594	17.594	4	0.00041569	12279	DP690-13	110.1	95.737			0.69705	0.77157	NaN	1	0	Median	129080000	70843000	58235000	11030	637	10272	21551	52318;52319	52318		2	9606
NRPHICSFWVK	1	1	Unmodified	1442.7241	0.72412327	2242	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	0	1	13	0													1				13.87	13.87	3	0.019676	7167	DP690-13	98.754	68.362			NaN	NaN	NaN	0	0	Median	0	0	0	11031	2242	10273	21552	52320	52320		1	9606
NRPLSDEELDAMFPEGYK	1	1	Unmodified	2109.9677	0.96772018	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	10	0										1							18.543	18.543	3	0.027769	14701	DP690-10	51.611	32.168			0.56762	0.66646	NaN	1	0	Median	215860000	187530000	28329000	11032	263	10274	21553	52321	52321		1	9606
NRQEYEDIAVK	1	1	Unmodified	1363.6732	0.67319314	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	1	7	4			1								1						12.237	12.237	2	0.00029058	4977	DP690-3	128.35	80.642			0.85043	0.97143	4.3484	2	0	Median	101310000	53909000	47399000	11033	149	10275	21554;21555	52322;52323;52324;52325;52326;52327;52328;52329;52330	52330		9	9606
NSALSAQLR	0	1	Unmodified	958.51959	0.51959303	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	11	0											1						12.631	12.631	2	0.0022758	5891	DP690-11	111.95	76.329			0.85277	1.0276	NaN	1	0	Median	82574000	39996000	42578000	11034	770	10276	21556	52331;52332	52331		2	9606
NSATLFSASDYEVAPPEYHR	0	1	Unmodified	2253.0338	0.033825909	2323	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	yes	yes	0	0	0	14	0														1			17.627	17.627	3	5.1315E-05	12528	DP690-14	111.4	98.069			0.67947	0.82063	NaN	1	0	Median	58909000	39199000	19710000	11035	2323	10277	21557	52333;52334;52335	52334		3	9606
NSAVETVEQELLFVGSETGK	1	0	Unmodified	2136.0586	0.058643676	2443	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	0	12	0												1					23.669	23.669	2	8.0399E-14	20225	DP690-12	186.42	160.97			0.99692	1.2074	NaN	1	0	Median	3480300	1597900	1882400	11036	2443	10278	21558	52336;52337;52338;52339	52338		4	9606
NSEGWEQNGLYEFFR	0	1	Unmodified	1874.8224	0.82237657	1608	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	11	0											1						21.715	21.715	2	0.010582	18943	DP690-11	103.46	62.946			NaN	NaN	NaN	0	0	Median	8962100	0	8962100	11037	1608	10279	21559	52340	52340		1	9606
NSEPAGLETPEAK	1	0	Unmodified	1341.6412	0.64122431	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	6	4		1								1							12.634	12.634	2	0.00049308	4773	DP690-2	108.9	67.786			0.91735	0.92421	NaN	1	0	Median	39867000	34346000	5521000	11038	408	10280	21560;21561	52341;52342;52343;52344;52345;52346;52347	52347		7	9606
NSESESNKVAAETQSPSLFGSTK	2	0	Unmodified	2397.1296	0.12957679	2379	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	1	12	0												1					14.705	14.705	3	0.0089238	8573	DP690-12	79.237	48.157			NaN	NaN	NaN	0	0	Median	0	0	0	11039	2379	10281	21562	52348	52348		1	9606
NSFTVDCSK	1	0	Unmodified	1056.4546	0.45460951	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	6	4		1								1							11.861	11.861	2	0.0045862	5028	DP690-10	101.46	58.596			1.0282	1.1318	12.083	2	0	Median	207140000	106630000	100500000	11040	1270	10282	21563;21564	52349;52350;52351;52352;52353	52350		5	9606
NSGSCLGGDEIFLLCDK	1	0	Unmodified	1883.8393	0.83934854	1108	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	4	0				1													20.052	20.052	2	3.7032E-06	14820	DP690-4	134.61	113.58			0.9974	1.0662	NaN	1	0	Median	2563200	1270600	1292600	11041	1108	10283	21565	52354;52355;52356;52357	52356		4	9606
NSIALVSTNYPLSK	1	0	Unmodified	1505.809	0.80895834	1612	Q8IX90	SKA3	Spindle and kinetochore-associated protein 3	yes	yes	0	0	0	13	0													1				17.359	17.359	2	0.0031712	11985	DP690-13	87.719	69.661			0.94471	1.0996	NaN	1	0	Median	27034000	13170000	13863000	11042	1612	10284	21566	52358	52358		1	9606
NSILFLNSLDAK	1	0	Unmodified	1333.7242	0.72416608	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	5	3.46			3								1						20.016	20.016	2	3.7035E-10	16567	DP690-11	221.32	134.17			0.66275	0.73194	44.473	2	0	Median	220410000	115430000	104980000	11043	1613	10285	21567;21568;21569;21570	52359;52360;52361;52362;52363;52364;52365;52366;52367	52359		9	9606
NSIPEPIDPLFK	1	0	Unmodified	1368.7289	0.7289171	808;16;446	P49792;O14715;Q99666;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	0	9.5	0.5									1	1							19.352	19.352	2	0.0071086	15781	DP690-10	80.24	80.24			0.68552	0.86189	38.116	2	0	Median	70481000	34202000	36278000	11044	808;16;446	10286	21571;21572	52368;52369	52368		2	9606
NSIVNSQPPEK	1	0	Unmodified	1211.6146	0.61461563	2355	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	3	0			1														10.97	10.97	2	0.011855	3391	DP690-3	75.509	59.502			0.92975	0.97441	NaN	1	0	Median	4329100	1770900	2558200	11045	2355	10287	21573	52370;52371	52370		2	9606
NSLESYAFNMK	1	0	Oxidation (M)	1318.5864	0.58635197	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	7.75	4.26			1	1								2					16.361	16.361	2	0.00022217	9792	DP690-4	148.69	133.75			1.3734	1.0587	39.932	3	0	Plateau	657390000	260770000	396620000	11046	463	10288	21574;21575;21576;21577	52372;52373;52374;52375;52376;52377;52378;52379;52380;52381;52382;52383;52384	52383	547	13	9606
NSLESYAFNMK	1	0	Unmodified	1302.5914	0.59143734	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	4	0				1													17.706	17.706	2	2.9331E-05	11922	DP690-4	186.41	154.88			1.9485	2.0737	NaN	1	0	Median	60388000	20345000	40043000	11047	463	10288	21578	52385;52386;52387;52388	52385		4	9606
NSLFTGDTLGAGQFSFQR	0	1	Unmodified	1944.933	0.93298965	1749	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	10	0										1							21.327	21.327	3	0.065067	18462	DP690-10	37.477	16.912			0.81237	0.96505	NaN	1	0	Median	228930000	126850000	102080000	11048	1749	10289	21579	52389	52389		1	9606
NSLISSLEEEVSILNR	0	1	Unmodified	1801.9422	0.94215736	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							24.283	24.283	2	1.6625E-07	22266	DP690-10	173.11	113.95			0.94125	1.1433	NaN	1	0	Median	4082000	2427900	1654100	11049	1301	10290	21580	52390	52390		1	9606
NSLKDLPDVQELITQVR	1	1	Unmodified	1967.0688	0.068754852	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	1	12	0												1					20.535	20.535	3	0.00011528	16561	DP690-12	110.34	91.302			0.83162	1.0691	NaN	1	0	Median	23829000	12805000	11023000	11050	2342	10291	21581	52391	52391		1	9606
NSLLASYIHYVFR	0	1	Unmodified	1581.8304	0.83036248	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										2							21.734	21.734	2;3	0.00011928	19141	DP690-10	112.02	74.499			0.88755	1.109	NaN	1	0	Median	26053000	8427400	17626000	11051	1901	10292	21582;21583	52392;52393;52394;52395	52392		4	9606
NSLTSKDPDIK	2	0	Unmodified	1216.6299	0.62993134	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	7	4			1								1						10.624	10.624	2	0.00052823	2944	DP690-3	137.46	101.95			0.96368	1.0745	17.694	2	0	Median	124610000	65093000	59516000	11052	1300	10293	21584;21585	52396;52397;52398;52399	52399		4	9606
NSLVDKPFAAK	2	0	Unmodified	1188.6503	0.65027285	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	10	4						1								1			12.633	12.633	2	0.00037622	5512	DP690-14	175.93	117.5			0.87615	0.93993	12.021	2	0	Median	474840000	250090000	224750000	11053	1258	10294	21586;21587	52400;52401;52402;52403;52404;52405;52406;52407	52401		8	9606
NSLVDKPFAAKEDQLLCTDCYSNEYSSK	3	0	Unmodified	3281.4857	0.48565823	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	2	14	0														2			17.012	17.012	3;4	2.1505E-34	11720	DP690-14	194.89	170.25			0.8664	0.88864	NaN	1	0	Median	202110000	102010000	100100000	11054	1258	10295	21588;21589	52408;52409;52410	52410		3	9606
NSMDIQCEVDALLER	0	1	Oxidation (M)	1807.808	0.80804841	1092	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	1	0	11	0											1						21.58	21.58	2	0.00054958	18769	DP690-11	110.92	94.15			0.85187	1.0306	NaN	1	0	Median	21658000	11953000	9704500	11055	1092	10296	21590	52411;52412	52411	1714	2	9606
NSNILEDLETLR	0	1	Unmodified	1415.7256	0.72562264	775	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	8	4				1								1					21.68	21.68	2	1.2543E-07	17978	DP690-12	199.33	144.79			0.86152	1.0312	NaN	1	0	Median	29630000	14788000	14843000	11056	775	10297	21591;21592	52413;52414;52415;52416;52417;52418	52415		6	9606
NSNLEIPDTLQELFAR	0	1	Unmodified	1858.9425	0.94249171	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										1							23.396	23.396	2	1.3722E-07	21238	DP690-10	174.21	136.24			0.70158	0.87663	NaN	1	0	Median	30950000	17423000	13527000	11057	1158	10298	21593	52419	52419		1	9606
NSNLVGAAHEELQQSR	0	1	Unmodified	1751.8551	0.85507368	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.8	0.748											2	2	1				13.962	13.962	2;3	1.6193E-48	7845	DP690-11	335.79	283.82			0.8876	0.89176	11.466	5	0	Linear	1515099999.9999998	824160000	690910000	11058	359	10299	21594;21595;21596;21597;21598	52420;52421;52422;52423;52424;52425;52426;52427;52428;52429;52430;52431;52432;52433;52434;52435;52436	52421		16	9606
NSPLTVPMFLSLFSR	0	1	Oxidation (M)	1723.8967	0.89672749	1979	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	10	0										1							24.174	24.174	2	0.029784	22134	DP690-10	94.402	46.508			NaN	NaN	NaN	0	0	Median	0	0	0	11059	1979	10300	21599	52437	52437	2522	1	9606
NSPSNLSSSSDTGSVGGTYR	0	1	Unmodified	1971.877	0.87699092	164	O43166	SIPA1L1	Signal-induced proliferation-associated 1-like protein 1	yes	yes	0	0	0	10	0										2							13.108	13.108	2	4.2333E-82	6757	DP690-10	296.49	235.8			NaN	NaN	NaN	0	0	Median	18518000	18518000	0	11060	164	10301	21600;21601	52438;52439;52440	52439		3	9606
NSPVEAVFSYLTGK	1	0	Unmodified	1510.7668	0.76675917	867	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	11	0											3						24.328	24.328	2	3.3567E-05	21946	DP690-11	132.14	109.67			0.75805	0.93104	NaN	1	0	Median	23622000	11295000	12327000	11061	867	10302	21602;21603;21604	52441;52442;52443;52444;52445;52446	52442		6	9606
NSPVFELLPCGIIQGEPGAQPQLITFHPSFNK	1	0	Unmodified	3534.797	0.79696045	2199	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	12	0												1					22.692	22.692	3	9.8765E-06	19127	DP690-12	71.608	71.608			NaN	NaN	NaN	0	0	Median	1920000	1272000	647980	11062	2199	10303	21605	52447;52448	52448		2	9606
NSQFAGGPLGNPNTTAK	1	0	Unmodified	1672.8169	0.81689726	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	8.25	3.11			1						1	1	1						14.075	14.075	2	1.4758E-24	8047	DP690-11	276.12	235.01			0.73977	0.80903	8.2039	4	0	Median	843370000	490320000	353050000	11063	272	10304	21606;21607;21608;21609	52449;52450;52451;52452;52453;52454;52455;52456;52457;52458;52459;52460	52456		12	9606
NSSNTSVGSPSNTIGR	0	1	Unmodified	1576.7441	0.74412625	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	10.5	0.5										1	1						11.659	11.659	2	3.359E-18	4539	DP690-10	228.93	192.62			0.70912	0.88816	NaN	1	0	Median	51612000	30200000	21411000	11064	1546	10305	21610;21611	52461;52462;52463	52461		3	9606
NSSQGSVDLSMGLSSFISR	0	1	Oxidation (M)	1986.9317	0.93166902	1065	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	1	0	3	0			1														20.326	20.326	2	0.0033033	15576	DP690-3	81.632	53.248			0.89605	1.0074	NaN	1	0	Median	8249500	3985500	4263900	11065	1065	10306	21612	52464;52465;52466	52465	1658	3	9606
NSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLR	0	1	Unmodified	3405.6776	0.67757359	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	5	0					1												21.774	21.774	3	8.6735E-08	16625	DP690-5	81.489	66.225			0.62039	0.65011	NaN	1	0	Median	13841000	8603300	5237700	11066	2385	10307	21613	52467;52468;52469;52470	52469		4	9606
NSSYFVEWIPNNVK	1	0	Unmodified	1695.8257	0.82567103	1034;406;2017;370;2010;1217	P07437;P68371;Q9BVA1;Q13885;Q13509;P04350;Q9BUF5	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	0	9.75	3.83					1		1						1	1			20.205	20.205	2	1.1674E-15	15751	DP690-13	285.32	271.03			0.95867	0.97482	7.9123	4	0	Median	2501500000	1255300000	1246200000	11067	406;1034;2017;1217;370;2010	10308	21614;21615;21616;21617	52471;52472;52473;52474;52475;52476;52477;52478;52479;52480;52481;52482;52483;52484;52485	52472		15	9606
NSSYVHGGLDSNGKPADAVYGQK	2	0	Unmodified	2363.1142	0.1142015	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	1	9.33	3.77				1								2					12.62	12.62	3;4	2.1529000000000002E-24	5649	DP690-12	206.92	193.03			0.87664	0.99164	8.5178	2	0	Median	220380000	112290000	108090000	11068	1196	10309	21618;21619;21620	52486;52487;52488;52489;52490;52491;52492;52493;52494;52495	52490		10	9606
NSSYVHGGVDASGKPQEAVYGQNDIHHK	2	0	Unmodified	2993.4016	0.40160974	2404	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	1	12	0												1					11.551	11.551	4	5.7993E-11	4160	DP690-12	139	113.26			NaN	NaN	NaN	0	0	Median	17199000	0	17199000	11069	2404	10310	21621	52496;52497;52498	52496		3	9606
NSTTDQVYQAIAAK	1	0	Unmodified	1508.7471	0.74708636	1892	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	12	0												1					16.722	16.722	2	3.988E-05	11451	DP690-12	133.91	111.57			1.0169	1.2135	NaN	1	0	Median	70629000	33070000	37559000	11070	1892	10311	21622	52499;52500;52501	52499		3	9606
NSVDEQEETVISYESTPEVSR	0	1	Unmodified	2397.082	0.081957893	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	0	10	0										2							17.366	17.366	2	2.1022000000000002E-71	13005	DP690-10	338.78	316.92			0.53146	0.66459	NaN	1	0	Median	34091000	22307000	11785000	11071	2155	10312	21623;21624	52502;52503	52502		2	9606
NSVNMDLD	0	0	Oxidation (M)	922.37021	0.37021118	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	1	0	3	0			1														12.814	12.814	1	0.039547	5796	DP690-3	85.161	59.052			NaN	NaN	NaN	0	0	Median	0	0	0	11072	1778	10313	21625	52504;52505	52504	2341	2	9606
NSVTGGTAAFEPSVDYCVVK	1	0	Unmodified	2099.9834	0.98337024	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															17.867	17.867	2	2.2305E-30	11095	DP690-2	238.03	238.03			1.3614	1.3702	NaN	1	0	Median	9457800	4210700	5247100	11073	602	10314	21626	52506;52507;52508;52509;52510	52506		5	9606
NSVTPDMMEEMYKK	2	0	3 Oxidation (M)	1749.726	0.72595827	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	3	1	10	4						1								1			10.424	10.424	3	0.00023436	2681	DP690-14	98	92.529			0.99966	1.077	18.086	2	0	Median	34851000	16934000	17917000	11074	757	10315	21627;21628	52511;52512;52513;52514;52515	52511	1127;1128;1129	5	9606
NSYLEVLLK	1	0	Unmodified	1077.607	0.60701105	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	7.67	3.77					2								1				19.844	19.844	1;2	0.00014766	14145	DP690-5	179.81	109.99			0.77469	0.85947	13.565	3	0	Plateau	299060000	166360000	132700000	11075	1318	10316	21629;21630;21631	52516;52517;52518;52519;52520;52521;52522;52523;52524;52525;52526	52526		10	9606
NSYQDEDTAGGPPR	0	1	Unmodified	1505.6383	0.63826419	1511	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	2	0		2															11.294	11.294	2	0.0011899	3476	DP690-2	98.182	97.428			0.88743	0.90662	NaN	1	0	Median	987640	461450	526190	11076	1511	10317	21632;21633	52527;52528;52529;52530	52527		4	9606
NSYVAGQYDDAASYQR	0	1	Unmodified	1806.7809	0.78090569	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	6.12	3.48			1	4		1						2					14.58	14.58	2	9.4919E-24	8306	DP690-12	265.53	251.3			0.8904	0.9403	9.3382	3	0	Median	279640000	148260000	131380000	11077	469	10318	21634;21635;21636;21637;21638;21639;21640;21641	52531;52532;52533;52534;52535;52536;52537;52538;52539;52540;52541;52542;52543;52544;52545;52546;52547	52532		17	9606
NTAAEEHVAQGDATLEHSTNLDSSPSLSSVTVVPLR	0	1	Unmodified	3731.8238	0.82383972	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	9	0									1								17.849	17.849	4	0.06292	12244	DP690-9	36.802	15.832			NaN	NaN	NaN	0	0	Median	2769900	2769900	0	11078	1696	10319	21642	52548	52548		1	9606
NTAGAQPQDDSIGGR	0	1	Unmodified	1485.6808	0.68079771	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	10	0										1							10.964	10.964	2	3.769E-10	3685	DP690-10	239.48	206.1			0.76337	0.95207	NaN	1	0	Median	25506000	13900000	11605000	11079	1282	10320	21643	52549;52550	52549		2	9606
NTAPDNGPILLQAQTTQR	0	1	Unmodified	1936.9967	0.99665254	1157	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	11	0											2						15.906	15.906	2	0.0011024	10775	DP690-11	122.1	79.621			NaN	NaN	NaN	0	0	Median	12899000	12899000	0	11080	1157	10321	21644;21645	52551;52552	52551		2	9606
NTDEMVELR	0	1	Oxidation (M)	1121.5023	0.50228798	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	0	9.33	3.77				1								2					12.963	12.963	2	0.00074716	4921	DP690-12	153.04	108.64			0.80248	0.84623	11.362	3	0	Plateau	1375100000	728730000	646360000	11081	959	10322	21646;21647;21648	52553;52554;52555;52556;52557;52558;52559;52560;52561;52562;52563;52564;52565	52555	1477	13	9606
NTDEMVELR	0	1	Unmodified	1105.5074	0.50737336	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	12	0												3					14.557	14.557	2	4.5327E-16	8322	DP690-12	205.36	141.79			NaN	NaN	NaN	0	0	Median	702770000	702770000	0	11082	959	10322	21649;21650;21651	52566;52567;52568;52569	52566		4	9606
NTDQASMPDNTAAQK	1	0	Unmodified	1590.6944	0.69439886	668	P35579	MYH9	Myosin-9	no	no	0	0	0	8.25	3.63		1								2	1						10.696	10.696	2	6.0455E-17	2866	DP690-2	274.59	245.34			1.0969	1.109	NaN	1	0	Median	21069000	9780500	11289000	11083	668	10323	21652;21653;21654;21655	52570;52571;52572;52573;52574;52575;52576	52575		7	9606
NTDVAQSPEAPK	1	0	Unmodified	1255.6044	0.60444487	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	10	0										2							10.696	10.696	2	0.0024494	3256	DP690-10	123.62	66.703			NaN	NaN	NaN	0	0	Median	0	0	0	11084	2303	10324	21656;21657	52577;52578	52578		2	9606
NTDVPESQQNFHRPVK	1	1	Unmodified	1894.9286	0.92857298	1777	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	1	10	0										1							10.688	10.688	3	0.075484	3288	DP690-10	61.649	24.094			NaN	NaN	NaN	0	0	Median	56789000	56789000	0	11085	1777	10325	21658	52579	52579		1	9606
NTEAVTLNFR	0	1	Unmodified	1163.5935	0.59348625	2370	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	11	0											2						16.064	16.064	2	0.024779	10966	DP690-11	96.665	34.558			NaN	NaN	NaN	0	0	Median	0	0	0	11086	2370	10326	21659;21660	52580;52581	52581		2	9606
NTENNDVEISETK	1	0	Unmodified	1491.6689	0.66889562	1446	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	10	0										3							11.804	11.804	2	0.00020485	4832	DP690-10	160.72	140.96			0.86184	1.0556	NaN	1	0	Median	29633000	15959000	13674000	11087	1446	10327	21661;21662;21663	52582;52583;52584	52582		3	9606
NTFDHPYPTTK	1	0	Unmodified	1319.6146	0.61461563	956	P61962	DCAF7	DDB1- and CUL4-associated factor 7	yes	yes	0	0	0	14	0														2			11.905	11.905	2;3	0.0072021	4548	DP690-14	80.737	48.703			0.68955	0.83066	6.9543	2	0	Median	93765000	52456000	41309000	11088	956	10328	21664;21665	52585;52586;52587	52585		3	9606
NTFELITVRPQR	0	2	Unmodified	1472.81	0.80996139	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	10	0										2							15.935	15.935	2;3	2.4224E-07	10786	DP690-10	192.12	162.34			0.86958	1.0357	5.3965	2	0	Median	341320000	184700000	156620000	11089	2190	10329	21666;21667	52588;52589;52590;52591	52588		4	9606
NTGIICTIGPASR	0	1	Unmodified	1358.6976	0.69763375	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	8	3.27				1				1				1					15.372	15.372	2	9.7189E-11	8986	DP690-4	236.69	212.7			0.92621	0.94296	25.945	3	0	Plateau	332710000	169060000	163640000	11090	488	10330	21668;21669;21670	52592;52593;52594;52595;52596;52597;52598;52599;52600;52601;52602;52603	52599		12	9606
NTGVILANDANAER	0	1	Unmodified	1456.727	0.72701962	752	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	11	0											1						13.824	13.824	2	0.039131	7674	DP690-11	87.719	20.757			NaN	NaN	NaN	0	0	Median	16715000	0	16715000	11091	752	10331	21671	52604	52604		1	9606
NTHTLLLAGVFR	0	1	Unmodified	1340.7565	0.75646926	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	7	4			1								1						17.659	17.659	2;3	0.0018784	13258	DP690-11	84.352	60.976			1.1021	1.3153	NaN	1	0	Median	43861000	15490000	28371000	11092	2515	10332	21672;21673	52605;52606;52607;52608	52606		4	9606
NTISLLVAGLK	1	0	Unmodified	1127.6914	0.69140938	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								20.312	20.312	2	0.0025697	15179	DP690-9	93.111	73.12			1.0104	1.2887	NaN	1	0	Median	9359200	3987500	5371600	11093	1264	10333	21674	52609;52610;52611;52612	52609		4	9606
NTISLLVAGLKK	2	0	Unmodified	1255.7864	0.7863724	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	5.5	3.5		1							1								17.853	17.853	2	0.00018026	11127	DP690-2	131.12	126.02			1.0694	1.1906	6.2053	2	0	Median	17138000	8844800	8293000	11094	1264	10334	21675;21676	52613;52614;52615;52616;52617	52613		5	9606
NTLCAPEVISLINTR	0	1	Unmodified	1699.8927	0.89270474	1834	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	13	0													1				20.525	20.525	2	0.0003099	16104	DP690-13	112.02	73.064			0.81037	0.97201	NaN	1	0	Median	91053000	49107000	41945000	11095	1834	10335	21677	52618;52619;52620;52621;52622	52619		5	9606
NTLFNLSNFLDK	1	0	Unmodified	1424.73	0.72997974	1214	Q13492;O60641	PICALM;SNAP91	Phosphatidylinositol-binding clathrin assembly protein;Clathrin coat assembly protein AP180	yes	no	0	0	0	12	0												1					22.29	22.29	2	6.713E-05	18576	DP690-12	138.25	102.71			0.85874	1.0227	NaN	1	0	Median	41142000	21531000	19611000	11096	1214	10336	21678	52623;52624;52625;52626	52625		4	9606
NTLLIAGLQAR	0	1	Unmodified	1168.6928	0.69280637	699	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	13.5	0.5													1	1			17.688	17.688	2	0.00010359	12531	DP690-14	126.24	126.24			0.7644	0.93402	4.5108	2	0	Median	64662000	38069000	26593000	11097	699	10337	21679;21680	52627;52628;52629;52630;52631	52629		5	9606
NTLTNIAMRPGLEGYALPR	0	2	Oxidation (M)	2102.0943	0.094258096	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	1	7	4			1								1						17.585	17.585	3	0.00011292	13110	DP690-11	106.82	83.853			0.683	0.77129	8.8153	2	0	Median	388770000	248260000	140510000	11098	652	10338	21681;21682	52632;52633;52634;52635;52636	52632	916	5	9606
NTLTNIAMRPGLEGYALPR	0	2	Unmodified	2086.0993	0.099343474	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	11	0											2						18.399	18.399	2;3	2.1354E-07	14281	DP690-11	142.4	142.4			0.67898	0.83699	NaN	1	0	Median	314040000	184600000	129440000	11099	652	10338	21683;21684	52637;52638;52639;52640;52641	52637		5	9606
NTMEALPACLLR	0	1	Oxidation (M)	1403.6901	0.69010553	367	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	1	0	15	0															1		17.338	17.338	2	0.00053901	11908	DP690-15	117.71	88.979			0.91092	1.0457	NaN	1	0	Median	37078000	19073000	18005000	11100	367	10339	21685	52642;52643	52643	382	2	9606
NTMSLLAANNLLAGLR	0	1	Oxidation (M)	1686.9087	0.90868916	2320	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	1	0	6	0						1											20.961	20.961	2	4.5515E-17	15141	DP690-6	216.91	187.85			0.97254	1.1149	NaN	1	0	Median	7081200	3673900	3407200	11101	2320	10340	21686	52644;52645;52646	52645	2771	3	9606
NTNAAEESLPEIQK	1	0	Unmodified	1542.7526	0.75256567	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	4.25	3.34		2	1							1							14.713	14.713	2	1.9551E-14	9149	DP690-10	227.48	189.93			0.78248	0.89171	12.673	2	0	Median	79924000	39140000	40785000	11102	2215	10341	21687;21688;21689;21690	52647;52648;52649;52650;52651;52652;52653;52654;52655;52656	52649		10	9606
NTNDANSCQIIIPQNQVNR	0	1	Unmodified	2198.0498	0.049827099	816	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	yes	no	0	0	0	5	0					1												15.142	15.142	2	4.5554E-29	8238	DP690-5	234.87	194.1			NaN	NaN	NaN	0	0	Median	0	0	0	11103	816	10342	21691	52657	52657		1	9606
NTNPNFVR	0	1	Unmodified	960.47773	0.47772821	668;669	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	2	0		1															11.212	11.212	2	0.043913	3386	DP690-2	130.77	92.605			1.0406	1.0818	NaN	1	0	Median	59274000	27767000	31507000	11104	668;669	10343	21692	52658	52658		0	9606
NTNVNAMHQVTDSHTPCHK	1	0	Oxidation (M)	2205.9644	0.96438291	290	O94763	URI1	Unconventional prefoldin RPB5 interactor 1	yes	yes	0	1	0	12	0												1					9.9116	9.9116	4	0.0027256	2177	DP690-12	66.289	57.347			0.73465	0.89038	NaN	1	0	Median	4106800	2217200	1889600	11105	290	10344	21693	52659;52660;52661;52662;52663	52661	302	5	9606
NTPAFFAER	0	1	Unmodified	1051.5087	0.50869399	828	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	4	0				1													15.591	15.591	2	0.0063609	9336	DP690-4	94.309	22.93			0.69096	0.80288	NaN	1	0	Median	15802000	8479900	7322300	11106	828	10345	21694	52664	52664		1	9606
NTPCSENKLDIQEK	2	0	Unmodified	1674.7883	0.78829925	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	1	11	0											1						11.534	11.534	2	0.067769	4329	DP690-11	109.16	68.431			NaN	NaN	NaN	0	0	Median	0	0	0	11107	2105	10346	21695	52665	52665		1	9606
NTPSFLIACNK	1	0	Unmodified	1263.6282	0.6281572	2502	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	15	0															1		16.157	16.157	2	0.0021973	10331	DP690-15	96.331	96.331			0.79359	0.8962	NaN	1	0	Median	87990000	51223000	36767000	11108	2502	10347	21696	52666;52667;52668;52669	52667		4	9606
NTPSPFIETFTEDDEASR	0	1	Unmodified	2054.9069	0.90689406	776	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	4	0				1													19.309	19.309	2	6.0885E-06	13917	DP690-4	134.21	112.35			0.71693	0.82882	NaN	1	0	Median	4093800	2349000	1744800	11109	776	10348	21697	52670;52671;52672;52673;52674;52675	52672		6	9606
NTSDVISAAK	1	0	Unmodified	1004.5138	0.51383895	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											1						11.574	11.574	2	0.041859	4372	DP690-11	66.962	17.372			0.81229	0.95902	NaN	1	0	Median	118270000	71082000	47186000	11110	657	10349	21698	52676;52677	52676		2	9606
NTSELVSSEVYLLSALAALQK	1	0	Unmodified	2235.1998	0.1998286	2122	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	10	0										2							26.218	26.218	2	1.0253999999999999E-26	24512	DP690-10	220.21	162.41			NaN	NaN	NaN	0	0	Median	0	0	0	11111	2122	10350	21699;21700	52678;52679	52679		2	9606
NTSEQDQPMGGWEMIR	0	1	Oxidation (M)	1893.7985	0.79854636	544	P20700	LMNB1	Lamin-B1	yes	yes	0	1	0	12	0												1					16.811	16.811	2	0.041152	11544	DP690-12	61.532	42.036			1.0469	1.257	NaN	1	0	Median	19593000	7088800	12504000	11112	544	10351	21701	52680	52680	697	1	9606
NTSEQDQPMGGWEMIR	0	1	Unmodified	1877.8036	0.80363174	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					18.411	18.411	2	2.5693E-06	13771	DP690-12	140.01	117.12			0.72949	0.88768	NaN	1	0	Median	12260000	6964800	5295700	11113	544	10351	21702	52681	52681		1	9606
NTSVVDSEPVR	0	1	Unmodified	1201.5939	0.59388018	1151	Q0ZGT2	NEXN	Nexilin	yes	yes	0	0	0	11	0											1						12.215	12.215	2	0.0036475	5268	DP690-11	90.827	47.176			0.57856	0.69296	NaN	1	0	Median	55475000	35595000	19880000	11114	1151	10352	21703	52682;52683	52682		2	9606
NTVANSPQTLLAGMNK	1	0	Oxidation (M)	1673.8407	0.84066917	943	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	1	0	12	0												1					15.027	15.027	2	0.0012702	9043	DP690-12	99.732	72.843			0.91859	1.1039	NaN	1	0	Median	25671000	14247000	11424000	11115	943	10353	21704	52684;52685	52684	1461	2	9606
NTVANSPQTLLAGMNK	1	0	Unmodified	1657.8458	0.84575455	943	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	12	0												1					17.469	17.469	2	3.3806E-12	12508	DP690-12	202.18	202.18			0.86309	1.0282	NaN	1	0	Median	44976000	21315000	23661000	11116	943	10353	21705	52686;52687	52686		2	9606
NTVELLVEDKGNQVYR	1	1	Unmodified	1875.969	0.96904081	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										1							16.165	16.165	2	8.707400000000001E-71	11211	DP690-10	369.42	319.95			0.74051	0.88061	NaN	1	0	Median	178720000	93976000	84745000	11117	250	10354	21706	52688;52689;52690;52691	52689		4	9606
NTVLCNVVEQFLQADLAR	0	1	Unmodified	2089.0626	0.062623617	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	10.8	0.829										2	1	1					25.831	25.831	2	4.2105999999999996E-50	23731	DP690-11	325.57	325.57			0.97936	1.2004	11.645	2	0	Median	37088000	19584000	17504000	11118	1269	10355	21707;21708;21709;21710	52692;52693;52694;52695;52696;52697;52698;52699;52700;52701;52702;52703;52704;52705	52700		14	9606
NTVQGIINFYTALR	0	1	Unmodified	1608.8624	0.86239089	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								22.48	22.48	2	0.0014142	17808	DP690-9	136.01	94.85			NaN	NaN	NaN	0	0	Median	2361800	2361800	0	11119	2217	10356	21711	52706;52707	52707		2	9606
NTVTLLEEALDQDR	0	1	Unmodified	1615.8053	0.80532952	2388	Q9ULH1	ASAP1	Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	0	0	11	0											2						21.831	21.831	2	0.002735	19002	DP690-11	160.52	89.493			NaN	NaN	NaN	0	0	Median	0	0	0	11120	2388	10357	21712;21713	52708;52709	52708		2	9606
NTVVLFVPQQEAWVVER	0	1	Unmodified	2013.0684	0.068360922	2365	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	14	0														1			21.055	21.055	2	1.3527E-12	16951	DP690-14	236.42	236.42			0.8375	1.0125	NaN	1	0	Median	55134000	31738000	23396000	11121	2365	10358	21714	52710;52711;52712;52713;52714	52712		5	9606
NTWDCGLQILK	1	0	Unmodified	1346.6653	0.66527099	869	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	14	0														1			19.246	19.246	2	0.031622	14695	DP690-14	83.998	60.322			0.56535	0.68513	NaN	1	0	Median	69299000	43843000	25456000	11122	869	10359	21715	52715	52715		1	9606
NTWLYQALR	0	1	Unmodified	1163.6087	0.60874239	908	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	13	0													1				18.622	18.622	2	0.00079421	13605	DP690-13	133.12	103.95			0.9419	1.131	NaN	1	0	Median	89175000	45134000	44041000	11123	908	10360	21716	52716;52717	52716		2	9606
NVALGNAIR	0	1	Unmodified	926.52976	0.52976379	1728	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	3	0			1														13.483	13.483	2	0.030298	6637	DP690-3	73.616	37.431			1.0758	1.2357	NaN	1	0	Median	16431000	7297300	9133400	11124	1728	10361	21717	52718	52718		1	9606
NVALLSQLYHSPAR	0	1	Unmodified	1567.8471	0.84707518	1346	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	14.3	0.471														2	1		16.961	16.961	2;3	2.0965E-15	11560	DP690-14	234.24	187.42			0.7249	0.84706	7.2849	2	0	Median	345620000	197380000	148240000	11125	1346	10362	21718;21719;21720	52719;52720;52721;52722;52723;52724	52721		6	9606
NVAQYNANHPDFPMQIEQLER	0	1	Oxidation (M)	2529.1707	0.17067052	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	9	0									1								17.359	17.359	3	0.00061877	11636	DP690-9	83.666	62.067			0.8226	1.0267	NaN	1	0	Median	15299000	7553200	7746000	11126	1264	10363	21721	52725;52726;52727;52728	52725	1922	4	9606
NVAQYNANHPDFPMQIEQLER	0	1	Unmodified	2513.1758	0.17575589	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								18.171	18.171	3	0.016815	12662	DP690-9	51.503	38.463			1.3879	1.7334	NaN	1	0	Median	12711000	5334600	7376500	11127	1264	10363	21722	52729	52729		1	9606
NVCEQGTSTVDQNFGK	1	0	Unmodified	1782.7843	0.7842765	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	10	0										1							13.804	13.804	2	3.9028E-22	7766	DP690-10	248.21	219.14			0.82467	1.0171	NaN	1	0	Median	91227000	49732000	41495000	11128	1167	10364	21723	52730;52731;52732;52733	52730		4	9606
NVCLPPEMEVALTEDQVPALK	1	0	Oxidation (M)	2368.1654	0.16543371	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	0	7.67	3.3			1							2							20.769	20.769	2	3.4181E-07	16144	DP690-10	143.64	129.77			0.6086	0.74623	7.1146	2	0	Median	117010000	70714000	46299000	11129	604	10365	21724;21725;21726	52734;52735;52736;52737;52738;52739;52740;52741;52742;52743;52744;52745	52734	840	12	9606
NVCLPPEMEVALTEDQVPALK	1	0	Unmodified	2352.1705	0.17051909	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10.5	0.5										1	1						21.919	21.919	2	2.9063E-06	19321	DP690-10	138.01	138.01			0.62447	0.77112	NaN	1	0	Median	130430000	79094000	51341000	11130	604	10365	21727;21728	52746;52747;52748;52749;52750	52748		5	9606
NVDILKDPETVK	2	0	Unmodified	1369.7453	0.74529545	128	O14980	XPO1	Exportin-1	yes	yes	0	0	1	7	4			1								1						14.329	14.329	2	0.00019317	7712	DP690-3	181.4	132.4			0.91427	1.0248	28.515	2	0	Median	96267000	50993000	45274000	11131	128	10366	21729;21730	52751;52752;52753;52754;52755;52756;52757	52757		7	9606
NVDLASPEEHQK	1	0	Unmodified	1365.6525	0.6524577	1652	Q8N3R9	MPP5	MAGUK p55 subfamily member 5	yes	yes	0	0	0	11	0											1						10.968	10.968	2	0.075048	3500	DP690-11	81.017	20.619			NaN	NaN	NaN	0	0	Median	0	0	0	11132	1652	10367	21731	52758	52758		1	9606
NVDLLSDMVQEHDEPILK	1	0	Oxidation (M)	2110.0252	0.025235058	896	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	1	0	4	0				1													17.409	17.409	3	7.8148E-05	11688	DP690-4	114.52	75.642			0.88754	0.94799	NaN	1	0	Median	51219000	26729000	24491000	11133	896	10368	21732	52759;52760;52761;52762	52762	1378	4	9606
NVDPFHIYFCNLK	1	0	Unmodified	1665.7973	0.79734779	1525	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	14	0														1			19.767	19.767	3	0.0083257	15289	DP690-14	76.326	67.006			0.73278	0.89086	NaN	1	0	Median	50127000	27555000	22572000	11134	1525	10369	21733	52763;52764;52765	52763		3	9606
NVDSNLANLIMNEIVDNGTAVK	1	0	Oxidation (M)	2359.1689	0.16893918	2317	Q9UBP0	SPAST	Spastin	yes	yes	0	1	0	12	0												3					22.903	22.903	2	2.3169E-09	19376	DP690-12	147.7	135.35			0.46739	0.56488	NaN	1	0	Median	2150700	1266400	884350	11135	2317	10370	21734;21735;21736	52766;52767;52768;52769;52770;52771	52768	2769	6	9606
NVDSNNKELSIAIR	1	1	Unmodified	1571.8267	0.82673367	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.33	0.471									2	1							14.17	14.17	2;3	6.8607E-05	7375	DP690-9	176.18	120.14			0.80227	0.93049	4.4584	2	0	Median	244500000	189080000	55417000	11136	1046	10371	21737;21738;21739	52772;52773;52774;52775;52776;52777;52778;52779	52774		8	9606
NVDVEFFK	1	0	Unmodified	996.49165	0.49164694	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	14	0														2			17.777	17.777	2	0.054324	12662	DP690-14	110.81	74.106			NaN	NaN	NaN	0	0	Median	0	0	0	11137	763	10372	21740;21741	52780;52781	52780		2	9606
NVEAMNFADIER	0	1	Oxidation (M)	1423.6402	0.64017845	685	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	1	0	13	0													1				15.703	15.703	2	0.0073008	9701	DP690-13	87.184	62.952			1.1553	1.4166	NaN	1	0	Median	30711000	13268000	17443000	11138	685	10373	21742	52782;52783	52782	988	2	9606
NVEDFTGPR	0	1	Unmodified	1033.4829	0.48287317	933	P61009	SPCS3	Signal peptidase complex subunit 3	yes	yes	0	0	0	15	0															1		13.616	13.616	2	0.0065795	7020	DP690-15	93.429	48.736			0.69616	0.77028	NaN	1	0	Median	96568000	60898000	35670000	11139	933	10374	21743	52784;52785;52786;52787	52787		4	9606
NVEDLSGGELQR	0	1	Unmodified	1315.6368	0.63680763	943	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	12	0												1					14.549	14.549	2	0.00019785	8379	DP690-12	158.47	103.41			0.82435	0.96082	NaN	1	0	Median	104840000	49711000	55133000	11140	943	10375	21744	52788;52789;52790;52791	52788		4	9606
NVEELVIVLK	1	0	Unmodified	1154.6911	0.69107503	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	3	0			1														19.799	19.799	2	0.011209	14935	DP690-3	81.972	54.668			2.6805	2.8318	NaN	1	0	Median	8998800	2029300	6969500	11141	877	10376	21745	52792	52792		1	9606
NVEGQDMLYQSLK	1	0	Oxidation (M)	1539.7239	0.72390808	1152;1013	Q10567;P63010	AP1B1;AP2B1	AP-1 complex subunit beta-1;AP-2 complex subunit beta	no	no	0	1	0	5.67	3.77			2								1						15.599	15.599	2	0.0011453	10358	DP690-11	106.62	84.838			1.4303	1.7264	NaN	1	0	Median	48603000	22831000	25773000	11142	1152;1013	10377	21746;21747;21748	52793;52794;52795;52796;52797	52793	1536	5	9606
NVELVEGEEGR	0	1	Unmodified	1229.5888	0.58879481	861	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	11	0											1						13.608	13.608	2	2.0969E-06	7338	DP690-11	160.53	108.04			NaN	NaN	NaN	0	0	Median	36795000	0	36795000	11143	861	10378	21749	52798;52799	52798		2	9606
NVESFASMLR	0	1	Oxidation (M)	1168.5547	0.55465791	2442	Q9Y2Q9	MRPS28	28S ribosomal protein S28, mitochondrial	yes	yes	0	1	0	16	0																1	16.426	16.426	2	0.033435	10343	DP690-16	74.173	52.322			0.96622	1.1103	NaN	1	0	Median	30758000	15818000	14940000	11144	2442	10379	21750	52800;52801;52802;52803	52800	2891	4	9606
NVESTNSNAYTQR	0	1	Unmodified	1482.6699	0.66989867	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	12	2.51									2		1	2			1	1	10.791	10.791	2	9.9897E-11	3370	DP690-11	225.22	196.26			1.0061	1.2074	18.278	3	0	Median	129590000	67646000	61942000	11145	1573	10380	21751;21752;21753;21754;21755;21756;21757	52804;52805;52806;52807;52808;52809;52810;52811;52812	52805		9	9606
NVFDEAILAALEPPEPK	1	0	Unmodified	1851.9618	0.96183016	931	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	0	0	0	16	0																1	24.159	24.159	2	3.7032E-06	19077	DP690-16	134.61	134.61			0.51642	0.59709	NaN	1	0	Median	1455300	908470	546820	11146	931	10381	21758	52813;52814;52815;52816	52814		4	9606
NVFNALIR	0	1	Unmodified	945.5396	0.53960019	1101	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	15	0															1		18.198	18.198	2	0.043648	12876	DP690-15	122.79	79.79			0.81448	0.91172	NaN	1	0	Median	71405000	40209000	31197000	11147	1101	10382	21759	52817	52817		0	9606
NVFSSSGTSFSGR	0	1	Unmodified	1331.6106	0.61059288	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	10	0										1							15.169	15.169	2	0.0015941	9750	DP690-10	96.171	55.447			0.87266	1.0896	NaN	1	0	Median	66998000	35869000	31130000	11148	807	10383	21760	52818;52819;52820;52821	52818		4	9606
NVGNAILYETVLTIMDIK	1	0	Oxidation (M)	2022.0707	0.070728687	188	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	1	0	11	0											2						25.294	25.294	2	0.0020717	23252	DP690-11	111.31	76.236			NaN	NaN	NaN	0	0	Median	3035800	1568400	1467400	11149	188	10384	21761;21762	52822;52823;52824;52825	52825	201	4	9606
NVGQFSGFPFEK	1	0	Unmodified	1355.651	0.65100113	674	P35659	DEK	Protein DEK	yes	yes	0	0	0	13	0													1				19.025	19.025	2	0.00071298	14104	DP690-13	108.43	108.43			0.72626	0.81403	NaN	1	0	Median	171290000	97144000	74146000	11150	674	10385	21763	52826;52827;52828;52829	52828		4	9606
NVIDGDLCEQFNSMEPNK	1	0	Oxidation (M)	2124.9092	0.90921902	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	0	10	0										2							17.386	17.386	2	2.1961E-10	13008	DP690-10	183.96	156.41			0.94697	1.1653	NaN	1	0	Median	49681000	27515000	22166000	11151	1329	10386	21764;21765	52830;52831;52832	52832	2067	3	9606
NVIFQPVAELK	1	0	Unmodified	1256.7129	0.71287311	1089	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	3	0			1														18.249	18.249	2	0.0080596	12922	DP690-3	82.261	82.261			0.99273	1.069	NaN	1	0	Median	18014000	8659900	9353900	11152	1089	10387	21766	52833;52834;52835	52833		3	9606
NVIFQPVAELKK	2	0	Unmodified	1384.8078	0.80783613	1089	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	1	3	0			1														15.818	15.818	3	0.081966	9840	DP690-3	33.204	11.853			0.81489	0.87807	NaN	1	0	Median	29475000	16149000	13327000	11153	1089	10388	21767	52836	52836		1	9606
NVIGLQMGTNR	0	1	Oxidation (M)	1217.6187	0.61865515	690	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	10	3.56							1	1							1		13.174	13.174	2	0.00062244	6378	DP690-15	117.53	82.17			0.87319	0.9575	9.5249	3	0	Median	243050000	129340000	113710000	11154	690	10389	21768;21769;21770	52837;52838;52839;52840;52841;52842	52837	996	6	9606
NVIISSAAERPLEIR	0	2	Unmodified	1666.9366	0.93661847	1040	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	1	15	0															2		15.984	15.984	2;3	9.3293E-05	10060	DP690-15	160.72	126.03			0.71939	0.7804	2.0378	2	0	Median	92441000	50280000	42161000	11155	1040	10390	21771;21772	52843;52844;52845;52846;52847;52848	52845		6	9606
NVIQSVLQAIR	0	1	Unmodified	1239.7299	0.72992016	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	8	3.56			1							1	1						22.533	22.533	2	0.00010139	20109	DP690-10	126.31	126.31			0.79181	0.90036	17.613	3	0	Median	126770000	74463000	52302000	11156	1531	10391	21773;21774;21775	52849;52850;52851;52852;52853;52854;52855;52856;52857;52858	52850		10	9606
NVIVLQTVLQEVR	0	1	Unmodified	1509.8879	0.88787736	2440	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	11	0											1						21.408	21.408	2	0.00011525	18514	DP690-11	123.01	96.335			0.79499	0.94897	NaN	1	0	Median	33669000	17352000	16318000	11157	2440	10392	21776	52859;52860;52861	52859		3	9606
NVKEDSTADDSKDSVAQGTTNVHSSEHAGR	2	1	Unmodified	3141.4195	0.41950423	749	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	9	0									1								10.298	10.298	5	0.00039365	2531	DP690-9	73.519	53.532			NaN	NaN	NaN	0	0	Median	5129900	5129900	0	11158	749	10393	21777	52862	52862		1	9606
NVLAPYAVPSELVLVEEIPR	0	1	Unmodified	2207.2202	0.22017012	1396	Q4G176	ACSF3	Acyl-CoA synthetase family member 3, mitochondrial	yes	yes	0	0	0	12	0												1					23.358	23.358	2	3.3959E-10	19846	DP690-12	158.93	146.36			0.57012	0.6971	NaN	1	0	Median	5408500	3305700	2102800	11159	1396	10394	21778	52863;52864;52865;52866	52863		4	9606
NVLGHMQQGGSPTPFDR	0	1	Oxidation (M)	1855.8635	0.86352988	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	1	0	3	0			1														13.311	13.311	3	0.0009256	6430	DP690-3	84.046	60.649			0.93086	1.0633	NaN	1	0	Median	24247000	12235000	12012000	11160	415	10395	21779	52867;52868	52868	461	2	9606
NVLGWQDANSTEFDPTTSHPVVVDMPEHNPGQMGGTMR	0	1	3 Oxidation (M)	4198.8419	0.8418911	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	3	0	4	0				1													17.138	17.138	4	0.00017568	11246	DP690-4	56.515	54.599			0.59031	0.66753	NaN	1	0	Median	27433000	16101000	11332000	11161	516	10396	21780	52869	52869	649;650;651	1	9606
NVLGWQDANSTEFDPTTSHPVVVDMPEHNPGQMGGTMR	0	1	2 Oxidation (M)	4182.847	0.84697648	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	2	0	4	0				1													17.452	17.452	4	0.001524	11713	DP690-4	48.388	45.581			0.71986	0.83527	NaN	1	0	Median	6010700	3861300	2149400	11162	516	10396	21781	52870	52870	649;650;651	1	9606
NVLISVLQAIR	0	1	Unmodified	1224.7554	0.75540662	1849	Q96F07	CYFIP2	Cytoplasmic FMR1-interacting protein 2	yes	yes	0	0	0	3	0			1														22.742	22.742	2	0.028709	18403	DP690-3	93.111	56.686			NaN	NaN	NaN	0	0	Median	1097500	0	1097500	11163	1849	10397	21782	52871	52871		1	9606
NVLIVEDIIDTGK	1	0	Unmodified	1427.7872	0.78716026	356	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	7	0							1										20.972	20.972	2	6.7904E-05	15724	DP690-7	161.19	135.14			0.82193	0.89074	NaN	1	0	Median	26287000	14393000	11894000	11164	356	10398	21783	52872;52873;52874;52875	52875		4	9606
NVLLDPQLVPGGGASEMAVAHALTEK	1	0	Oxidation (M)	2632.3531	0.35305156	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	8	4				1								1					20.279	20.279	3	0.00018087	14968	DP690-4	80.981	80.981			1.5627	1.688	NaN	1	0	Median	13977000	3007000	10970000	11165	791	10399	21784;21785	52876;52877;52878	52877	1200	3	9606
NVLLNNSEK	1	0	Unmodified	1029.5455	0.54547343	1141	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	3	0			1														11.798	11.798	2	0.043086	4374	DP690-3	69.628	50.524			1.3434	1.4397	NaN	1	0	Median	15308000	6307600	9000400	11166	1141	10400	21786	52879;52880	52879		2	9606
NVLQFTEEKEAFISEEEIAK	2	0	Unmodified	2353.1689	0.16892241	1884	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	1	11	0											1						19.154	19.154	3	5.7675E-05	15423	DP690-11	112.14	78.462			0.7276	0.85097	NaN	1	0	Median	59666000	32880000	26787000	11167	1884	10401	21787	52881	52881		1	9606
NVLSDSRPAMAPGSSHLGAPASTTTAADATPSGSLAR	0	2	Oxidation (M)	3537.7118	0.71178685	1980	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	1	1	12.5	0.5												1	1				14.407	14.407	4	8.6154E-12	7930	DP690-13	93.172	79.47			0.55756	0.6402	NaN	1	0	Median	94951000	79038000	15914000	11168	1980	10402	21788;21789	52882;52883;52884;52885	52883	2523	4	9606
NVLSEYQQRPQR	0	2	Unmodified	1516.7746	0.77463852	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	0	1	10.5	4.03						1	1							1	1		12.545	12.545	2	0.00020777	5214	DP690-7	128.86	88.361			0.96493	1.0423	27.432	4	0	Median	190570000	87656000	102920000	11169	1372	10403	21790;21791;21792;21793	52886;52887;52888;52889;52890;52891;52892;52893	52892		8	9606
NVLVSEDNVAK	1	0	Unmodified	1186.6194	0.61936665	719	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	5	0					1												13.287	13.287	2	0.0034218	5970	DP690-5	101.46	85.262			0.87178	0.86852	NaN	1	0	Median	75704000	40885000	34819000	11170	719	10404	21794	52894;52895;52896;52897	52896		4	9606
NVMEEGKDFQPSR	1	1	Oxidation (M)	1551.6988	0.69875596	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	1	1	3	0			2														10.985	10.985	2;3	0.00010166	3347	DP690-3	115.57	93.8			1.7769	1.9707	3.2449	2	0	Median	38891000	13694000	25197000	11171	670	10405	21795;21796	52898;52899;52900;52901;52902;52903;52904;52905	52898	973	8	9606
NVMVEPHRHEGVFICR	0	2	Oxidation (M)	1994.9567	0.95671876	558	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	1	1	14	0														1			11.53	11.53	4	0.0039097	4143	DP690-14	71.279	55.106			0.88312	1.0378	NaN	1	0	Median	69255000	37262000	31993000	11172	558	10406	21797	52906	52906	724	1	9606
NVMVEPHRHEGVFICR	0	2	Unmodified	1978.9618	0.96180414	558	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	14	0														1			12.402	12.402	3	0.045995	5329	DP690-14	48.112	32.52			0.64432	0.75718	NaN	1	0	Median	18746000	8313700	10432000	11173	558	10406	21798	52907;52908	52908		2	9606
NVNLVLLCSEKPSK	2	0	Unmodified	1599.8654	0.86542736	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	1	11	0											1						15.698	15.698	2	0.017147	10402	DP690-11	133.32	79.752			NaN	NaN	NaN	0	0	Median	0	0	0	11174	1889	10407	21799	52909	52909		1	9606
NVNVFFPHFK	1	0	Unmodified	1247.6451	0.64512789	1610	Q8IX04	UEVLD	Ubiquitin-conjugating enzyme E2 variant 3	yes	yes	0	0	0	5	0					1												17.702	17.702	2	0.036187	11605	DP690-5	74.301	60.066			0.68707	0.68675	NaN	1	0	Median	23015000	12499000	10516000	11175	1610	10408	21800	52910	52910		1	9606
NVPHEDICEDSDIDGDYR	0	1	Unmodified	2147.8702	0.87019098	97	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	12	0												1					14.535	14.535	3	0.0005295	8386	DP690-12	86.573	77.516			0.66343	0.78748	NaN	1	0	Median	52697000	28587000	24110000	11176	97	10409	21801	52911;52912;52913	52913		3	9606
NVPVITGSK	1	0	Unmodified	913.52328	0.52328142	660	P35232	PHB	Prohibitin	yes	yes	0	0	0	15	0															1		12.019	12.019	2	0.0077219	4738	DP690-15	91.853	59.383			0.74449	0.85726	NaN	1	0	Median	54687000	31876000	22811000	11177	660	10410	21802	52914;52915;52916;52917	52916		4	9606
NVPYVFVR	0	1	Unmodified	992.54435	0.54435122	899	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	0	16	0																1	16.806	16.806	2	0.020896	10801	DP690-16	110.34	63.27			NaN	NaN	NaN	0	0	Median	32594000	32594000	0	11178	899	10411	21803	52918	52918		1	9606
NVQAEEMVEFSSGLK	1	0	Oxidation (M)	1682.7822	0.78215124	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	12.5	0.5												2	2				16.138	16.138	2	2.1755E-05	10346	DP690-13	134.08	106.75			0.74841	0.86594	NaN	1	0	Median	57985000	36562000	21423000	11179	585	10412	21804;21805;21806;21807	52919;52920;52921;52922;52923;52924	52923	773	6	9606
NVQALEIELQSQLALK	1	0	Unmodified	1796.0044	0.0043636815	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	4	3.56	1	1							1								21.726	21.726	2	8.6396E-76	16845	DP690-9	290.61	242.61		+	NaN	NaN	NaN	0	0	Median	9390300	9390300	0	11180	42	10413	21808;21809;21810	52925;52926;52927;52928;52929;52930;52931	52930		7	9606
NVQDAIADAEQR	0	1	Unmodified	1328.6321	0.6320566	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	8	0								1									15.44	15.44	2	0.0003787	8605	DP690-8	144.17	96.081		+	NaN	NaN	NaN	0	0	Median	3707700	3707700	0	11181	44	10414	21811	52932;52933;52934	52933		3	9606
NVQFVFDAVTDVIIK	1	0	Unmodified	1706.9243	0.92432245	377;426	P08754;P63096;P04899	GNAI3;GNAI1;GNAI2	Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(i) subunit alpha-2	no	no	0	0	0	14	0														1			23.965	23.965	2	0.0045576	20467	DP690-14	78.903	46.744			0.66037	0.77738	NaN	1	0	Median	2387200	1412700	974490	11182	426;377	10415	21812	52935;52936	52936		2	9606
NVQGIIEILK	1	0	Unmodified	1125.6758	0.67575932	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10.5	0.5										1	1						19.594	19.594	2	0.0033759	16203	DP690-10	93.178	52.296			0.88563	1.0846	5.6587	2	0	Median	121220000	62888000	58328000	11183	732	10416	21813;21814	52937;52938;52939	52937		3	9606
NVQILNMVTR	0	1	Oxidation (M)	1202.6441	0.64414162	118	O14925	TIMM23	Mitochondrial import inner membrane translocase subunit Tim23	yes	yes	0	1	0	15	0															1		15.241	15.241	2	0.0020643	9039	DP690-15	107.15	85.468			0.91016	1.0108	NaN	1	0	Median	87629000	42611000	45018000	11184	118	10417	21815	52940;52941;52942	52941	128	3	9606
NVQLLSQFVSPFTGCIYGR	0	1	Unmodified	2185.099	0.099009123	2469	Q9Y3D5	MRPS18C	28S ribosomal protein S18c, mitochondrial	yes	yes	0	0	0	16	0																1	23.132	23.132	2	1.7234E-06	18088	DP690-16	137.62	137.62			0.63599	0.72563	NaN	1	0	Median	774860	420410	354450	11185	2469	10418	21816	52943;52944;52945;52946	52945		4	9606
NVQLQENEIR	0	1	Unmodified	1241.6364	0.6364137	683	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	7	1						1		1									13.433	13.433	2	2.5276E-05	6150	DP690-6	180.44	112.46			20.507	21.992	NaN	1	0	Median	97070000	3976700	93094000	11186	683	10419	21817;21818	52947;52948;52949;52950	52947		4	9606
NVQLTENEIR	0	1	Unmodified	1214.6255	0.62551466	963	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	9.33	3.4						1		1						1			13.919	13.919	2	2.3113E-05	7365	DP690-14	160.88	112.79			3.4121	3.7647	226.52	2	0	Median	368180000	141710000	226470000	11187	963	10420	21819;21820;21821	52951;52952;52953;52954;52955;52956;52957	52951		7	9606
NVQSVSIIDTELK	1	0	Unmodified	1444.7773	0.77732386	1342	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	5	0					1												17.543	17.543	2	0.00020576	11313	DP690-5	118.77	88.197			0.80237	0.80158	NaN	1	0	Median	27529000	15697000	11832000	11188	1342	10421	21822	52958	52958		1	9606
NVSAGTQDVPSPPSDYVER	0	1	Unmodified	2016.9389	0.93886289	1361	Q16625	OCLN	Occludin	yes	yes	0	0	0	12	0												1					15.609	15.609	2	0.0068593	9865	DP690-12	115.8	82.023			NaN	NaN	NaN	0	0	Median	0	0	0	11189	1361	10422	21823	52959	52959		1	9606
NVSDYTPLSLAASGGYVNIIK	1	0	Unmodified	2181.1317	0.13174904	242	O75179;Q8IWZ3	ANKRD17;ANKHD1	Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1	yes	no	0	0	0	10	0										1							22.006	22.006	2	0.039999	19425	DP690-10	86.539	49.175			NaN	NaN	NaN	0	0	Median	0	0	0	11190	242	10423	21824	52960	52960		1	9606
NVSEELDRTPPEVSK	1	1	Unmodified	1698.8424	0.84244331	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	1	9.67	0.471									1	2							13.473	13.473	2;3	9.2918E-05	7314	DP690-10	147.96	114.42			0.78107	0.94241	16.27	2	0	Median	60911000	36227000	24683000	11191	1329	10424	21825;21826;21827	52961;52962;52963;52964;52965	52963		5	9606
NVSGISFTENMGSSQQK	1	0	Unmodified	1812.8312	0.8312267	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.33	0.471									2	1							16.081	16.081	2	4.5535E-09	11188	DP690-10	180.61	160.51			0.84506	1.0388	NaN	1	0	Median	45819000	24032000	21787000	11192	808	10425	21828;21829;21830	52966;52967;52968;52969;52970	52968		5	9606
NVSGISFTENMGSSQQK	1	0	Oxidation (M)	1828.8261	0.82614132	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	1	0	9	0									1								14.438	14.438	2	2.2778E-17	7765	DP690-9	214.42	177.89			0.801	1.0252	NaN	1	0	Median	12999000	7377700	5621100	11193	808	10425	21831	52971;52972;52973;52974	52974	1215	4	9606
NVSQESLETKEEKPEETPK	3	0	Unmodified	2201.0699	0.069936644	1446	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	2	10	0										1							10.922	10.922	3	4.9074E-05	3732	DP690-10	119.48	90.593			0.59537	0.63853	NaN	1	0	Median	59657000	46585000	13071000	11194	1446	10426	21832	52975;52976;52977	52975		3	9606
NVSSFPDDATSPLQENR	0	1	Unmodified	1875.8599	0.85988429	850	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	8	4				1								1					16.394	16.394	2	3.9397E-18	10840	DP690-12	225.97	195.83			0.75672	0.88854	15.819	2	0	Median	46230000	28232000	17998000	11195	850	10427	21833;21834	52978;52979;52980;52981;52982;52983;52984;52985;52986;52987	52980		10	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	0	1	2 Oxidation (M)	2903.3753	0.37531992	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	2	0	5.38	4.81	2	3	2	1		1	1	1							1	1	20.82	20.82	2;3	1.8684E-34	15614	DP690-4	196.71	173.57		+	NaN	NaN	NaN	0	0	Median	47025000	47025000	0	11196	42	10428	21835;21836;21837;21838;21839;21840;21841;21842;21843;21844;21845;21846;21847	52988;52989;52990;52991;52992;52993;52994;52995;52996;52997;52998;52999;53000;53001;53002;53003;53004;53005;53006;53007;53008;53009;53010;53011;53012	53006	48;49	25	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	0	1	Oxidation (M)	2887.3804	0.3804053	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	0	9	0									1								22.906	22.906	2	2.6494E-35	18247	DP690-9	209.23	173.01		+	NaN	NaN	NaN	0	0	Median	2877900	2877900	0	11197	42	10428	21848	53013;53014;53015	53014	48;49	3	9606
NVTDEQEGFAEGFVR	0	1	Unmodified	1696.7693	0.76927837	386	P05412	JUN	Transcription factor AP-1	yes	yes	0	0	0	14	0														1			17.959	17.959	2	1.4402E-15	12870	DP690-14	239.48	206.62			0.90139	1.0798	NaN	1	0	Median	97990000	53881000	44109000	11198	386	10429	21849	53016;53017;53018	53016		3	9606
NVTDVVNTCHDAGISK	1	0	Unmodified	1728.8101	0.81009732	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	9.33	3.77				1								2					13.425	13.425	2;3	2.5434000000000002E-27	6758	DP690-12	286.53	250			0.84776	0.91568	9.0119	3	0	Median	424480000	219740000	204740000	11199	2475	10430	21850;21851;21852	53019;53020;53021;53022;53023;53024;53025	53019		7	9606
NVTDVVNTCHDAGISKK	2	0	Unmodified	1856.9051	0.90506034	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	1	12	0												1					12.08	12.08	3	1.4592E-06	4880	DP690-12	130.47	98.876			0.93205	1.054	NaN	1	0	Median	109370000	54958000	54412000	11200	2475	10431	21853	53026;53027	53026		2	9606
NVTELNEPLSNEER	0	1	Unmodified	1642.7798	0.77984305	960	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	15	0															1		14.874	14.874	2	3.5057E-16	8497	DP690-15	269.04	165.73			0.79313	0.90709	NaN	1	0	Median	40868000	21550000	19319000	11201	960	10432	21854	53028;53029;53030;53031	53028		4	9606
NVTLPAVFK	1	0	Unmodified	987.57532	0.57531699	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	13	0													1				17.977	17.977	2	0.017042	12597	DP690-13	82.452	65.067			0.8493	0.9437	NaN	1	0	Median	214530000	116440000	98095000	11202	681	10433	21855	53032;53033;53034;53035	53033		4	9606
NVTQIEPFCLETDRR	0	2	Unmodified	1876.9101	0.91014572	2396	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	1	11	0											1						16.78	16.78	3	0.061845	12044	DP690-11	71.513	29.323			NaN	NaN	NaN	0	0	Median	29826000	29826000	0	11203	2396	10434	21856	53036	53036		1	9606
NVTVQPDDPISFMQLTAK	1	0	Unmodified	2003.0034	0.0033774035	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	11	0											1						21.185	21.185	2	2.6714E-22	18193	DP690-11	219.84	192.17			0.8243	0.99891	NaN	1	0	Median	42487000	23983000	18504000	11204	877	10435	21857	53037;53038;53039;53040	53038		4	9606
NVTVQPDDPISFMQLTAK	1	0	Oxidation (M)	2018.9983	0.99829203	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	0	9	0									1								18.883	18.883	2	0.068678	13529	DP690-9	76.357	38.389			NaN	NaN	NaN	0	0	Median	1399400	1399400	0	11205	877	10435	21858	53041	53041		1	9606
NVVHQLSVTLEDLYNGATR	0	1	Unmodified	2128.0913	0.091281208	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	11	2									1				1				22.384	22.384	3	1.0993E-11	18435	DP690-13	165.17	165.17			0.88531	1.0813	29.637	2	0	Median	17286000	6882400	10404000	11206	636	10436	21859;21860	53042;53043	53042		2	9606
NVVLDALQLPK	1	0	Unmodified	1208.7129	0.71287311	1895	Q96ME1	FBXL18	F-box/LRR-repeat protein 18	yes	yes	0	0	0	11	0											1						19.912	19.912	2	0.0058121	16462	DP690-11	86.624	75.031			0.90629	1.1185	NaN	1	0	Median	13321000	6736200	6585100	11207	1895	10437	21861	53044;53045	53045		2	9606
NVVLPTETEVAPAK	1	0	Unmodified	1466.7981	0.7980593	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	11	0											1						15.721	15.721	2	0.025249	10435	DP690-11	95.477	60.063			NaN	NaN	NaN	0	0	Median	0	0	0	11208	604	10438	21862	53046	53046		1	9606
NVVLPTETEVAPAKDVTLLK	2	0	Unmodified	2136.2042	0.2041857	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	10	0										2							17.923	17.923	2;3	9.6333E-17	13724	DP690-10	196.97	190.26			0.7029	0.78088	11.891	2	0	Median	1380500000	779330000	601200000	11209	604	10439	21863;21864	53047;53048;53049;53050;53051;53052;53053;53054;53055	53053		9	9606
NVVLQTLEGHLR	0	1	Unmodified	1377.7728	0.7728476	1268	Q14254	FLOT2	Flotillin-2	yes	yes	0	0	0	13	0													1				17.77	17.77	3	3.8277E-05	12537	DP690-13	125.97	61.746			NaN	NaN	NaN	0	0	Median	15468000	15468000	0	11210	1268	10440	21865	53056;53057	53056		2	9606
NVVMVNQGLTK	1	0	Oxidation (M)	1217.6438	0.64380726	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	1	0	13	0													2				13.482	13.482	2	0.00019915	5916	DP690-13	125.71	95.149			0.9049	1.0233	12.507	2	0	Median	296190000	146050000	150140000	11211	491	10441	21866;21867	53058;53059;53060;53061;53062	53058	619	5	9606
NVVMVNQGLTK	1	0	Unmodified	1201.6489	0.64889264	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	0	13	0													1				13.98	13.98	2	3.7377E-05	7284	DP690-13	183.43	156.74			1.0081	1.1331	NaN	1	0	Median	159550000	76930000	82615000	11212	491	10441	21868	53063;53064;53065;53066	53064		4	9606
NVVTIFSAPNYCYR	0	1	Unmodified	1702.8137	0.81372614	987	P67775;P62714	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	yes	no	0	0	0	9	3.56						1	1							1			19.068	19.068	2	2.3663E-05	14389	DP690-14	211.64	162.34			1.1255	1.3254	56.965	2	0	Median	68666000	39985000	28681000	11213	987	10442	21869;21870;21871	53067;53068;53069;53070;53071;53072;53073;53074;53075	53068		9	9606
NVVVVDGVR	0	1	Unmodified	955.54508	0.5450795	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	13	0													1				13.543	13.543	2	0.0039972	6694	DP690-13	103.83	57.407			0.81148	0.92565	NaN	1	0	Median	237100000	135150000	101950000	11214	894	10443	21872	53076;53077	53076		2	9606
NVYLFPGIPELLR	0	1	Unmodified	1529.8606	0.86059998	1697	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	yes	yes	0	0	0	5	0					1												23.495	23.495	2	0.00084585	18715	DP690-5	104.82	104.82			0.90072	0.94022	NaN	1	0	Median	8317200	4610500	3706700	11215	1697	10444	21873	53078;53079;53080	53080		3	9606
NWADVQSQLR	0	1	Unmodified	1215.5996	0.59963426	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	3	0			1														16.386	16.386	2	0.0062229	10565	DP690-3	88.948	58.781			0.79266	0.90323	NaN	1	0	Median	12544000	6166300	6377700	11216	1333	10445	21874	53081;53082	53082		2	9606
NYAGEEEEEGSGSSEGFDPPATDR	0	1	Unmodified	2529.0052	0.0051641351	507	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	13	0													2				15.102	15.102	2	0.0016277	8904	DP690-13	117	93.988			NaN	NaN	NaN	0	0	Median	0	0	0	11217	507	10446	21875;21876	53083;53084	53084		2	9606
NYAHALDGLYR	0	1	Unmodified	1291.6309	0.63093439	2326	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	13	2.83									1						2		15.466	15.466	2;3	6.0678E-05	9367	DP690-15	124.67	86.674			0.98437	0.99185	25.722	3	0	Plateau	262860000	140250000	122600000	11218	2326	10447	21877;21878;21879	53085;53086;53087;53088;53089;53090;53091;53092;53093;53094;53095	53088		11	9606
NYGGTVAVTESGHTCQR	0	1	Unmodified	1835.8221	0.82205899	39	CON__P06868			yes	yes	0	0	0	12	0												2					11.257	11.257	2;3	5.0018E-48	3802	DP690-12	258.78	218.17		+	NaN	NaN	NaN	0	0	Median	40410000	40410000	0	11219	39	10448	21880;21881	53096;53097;53098;53099	53099		4	9606
NYGVTFPIFHK	1	0	Unmodified	1321.6819	0.68190733	1723	Q8TED1	GPX8	Probable glutathione peroxidase 8	yes	yes	0	0	0	15	0															1		17.909	17.909	2	0.0068472	12524	DP690-15	84.615	62.035			0.71699	0.84527	NaN	1	0	Median	15034000	8043100	6990800	11220	1723	10449	21882	53100;53101	53100		2	9606
NYHPIVVPGLGR	0	1	Unmodified	1320.7303	0.73025451	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										1							15.567	15.567	3	0.058051	10502	DP690-10	45.661	30.284			0.59443	0.74099	NaN	1	0	Median	72985000	40415000	32570000	11221	1158	10450	21883	53102	53102		1	9606
NYIQGINLVQAK	1	0	Unmodified	1359.751	0.75104953	862	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	0	0	16	0																1	17.302	17.302	2	0.00031947	11473	DP690-16	117.89	71.428			0.90308	1.0133	NaN	1	0	Median	59708000	29363000	30345000	11222	862	10451	21884	53103;53104;53105;53106	53106		4	9606
NYLEPGKECVQPATK	2	0	Unmodified	1732.8454	0.8454202	506	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	1	11	0											1						12.56	12.56	2	0.029057	5749	DP690-11	109.16	59.693			NaN	NaN	NaN	0	0	Median	12262000	0	12262000	11223	506	10452	21885	53107	53107		1	9606
NYLHYSLYDQAEK	1	0	Unmodified	1642.7627	0.76273643	168	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	4	0				2													15.26	15.26	2	0.0037436	8925	DP690-4	120.57	72.862			NaN	NaN	NaN	0	0	Median	0	0	0	11224	168	10453	21886;21887	53108;53109	53109		2	9606
NYLLSLPHK	1	0	Unmodified	1083.6077	0.60767975	610	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	6	0						1											15.385	15.385	2	0.017252	8471	DP690-6	82.241	63.262			0.80002	0.87614	NaN	1	0	Median	60191000	34651000	25539000	11225	610	10454	21888	53110;53111	53110		2	9606
NYLSCDVEVR	0	1	Unmodified	1253.571	0.57103625	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	11	0											1						15.125	15.125	2	0.0017238	9578	DP690-11	104.01	67.253			1.1101	1.3407	NaN	1	0	Median	96356000	53391000	42965000	11226	737	10455	21889	53112;53113;53114	53112		3	9606
NYMSEHLLK	1	0	Oxidation (M)	1149.5488	0.54884425	871	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	1	0	12	0												1					11.3	11.3	2	0.013771	3926	DP690-12	91.265	61.19			1.0743	1.2888	NaN	1	0	Median	29208000	14928000	14280000	11227	871	10456	21890	53115	53115	1316	1	9606
NYMSNPSYNYEIVNR	0	1	Oxidation (M)	1878.8207	0.82066201	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	5.5	3.5		1							1								15.429	15.429	2	2.3017E-15	9067	DP690-9	238.92	183.88			1.0193	1.1518	18.399	2	0	Median	14876000	8111600	6764900	11228	1264	10457	21891;21892	53116;53117;53118;53119;53120;53121;53122;53123	53123	1923	8	9606
NYQQNYQNSESGEKNEGSESAPEGQAQQR	1	1	Unmodified	3256.3889	0.38893238	1025	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	10.4	4.45					2								1	1	1		11.091	11.091	3	1.2631000000000001E-45	3411	DP690-13	215.51	212.59			0.94985	0.90212	9.9557	4	0	Linear	290300000	144760000	145540000	11229	1025	10458	21893;21894;21895;21896;21897	53124;53125;53126;53127;53128;53129;53130;53131;53132;53133;53134;53135;53136;53137;53138;53139;53140;53141;53142;53143;53144	53126		21	9606
NYQSSSPLPTVGSSYSSPDYSLQHFSSSPESQAR	0	1	Unmodified	3676.6554	0.65537741	2162	Q9HBL0	TNS1	Tensin-1	yes	yes	0	0	0	10	0										1							17.904	17.904	3	4.8052E-07	13771	DP690-10	94.261	80.736			NaN	NaN	NaN	0	0	Median	17117000	17117000	0	11230	2162	10459	21898	53145	53145		1	9606
NYSPYYNTIDDLKDQIVDLTVGNNK	2	0	Unmodified	2901.4032	0.40323245	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	5.5	3.61	2	1			1		1	1	1		1						23.055	23.055	2;3	8.0319E-16	14716	DP690-1	170.02	151.72		+	NaN	NaN	NaN	0	0	Median	130090000	130090000	0	11231	667	10460	21899;21900;21901;21902;21903;21904;21905;21906	53146;53147;53148;53149;53150;53151;53152;53153;53154;53155;53156;53157	53147		12	9606
NYTLVTVFGNLHQAQLGGVPGTYQLVR	0	1	Unmodified	2944.5559	0.55592554	1643	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	11	0											1						21.516	21.516	3	1.2806E-11	18633	DP690-11	151.23	151.23			0.66307	0.79108	NaN	1	0	Median	36901000	18349000	18552000	11232	1643	10461	21907	53158;53159;53160	53158		3	9606
NYYEQWGK	1	0	Unmodified	1086.4771	0.47705951	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	14	0														3			14.637	14.637	2	0.029766	8341	DP690-14	124.59	89.394			NaN	NaN	NaN	0	0	Median	0	0	0	11233	563	10462	21908;21909;21910	53161;53162;53163	53161		3	9606
PAAAATGPPPGNTSSTQK	1	0	Unmodified	1651.8166	0.81656291	2104	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	11	0											1						10.352	10.352	2	0.025359	2590	DP690-11	100.04	60.307			NaN	NaN	NaN	0	0	Median	0	0	0	11234	2104	10463	21911	53164	53164		1	9606
PAASITSKPATLTTTSATSK	2	0	Unmodified	1933.0368	0.036786022	184	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	1	12	0												2					12.318	12.318	2;3	6.921800000000001E-71	5207	DP690-12	401.79	308.02			0.68868	0.77241	0.76863	2	0	Median	910020000	524980000	385040000	11235	184	10464	21912;21913	53165;53166;53167;53168;53169;53170;53171;53172	53172		8	9606
PADEIAVDR	0	1	Unmodified	984.48762	0.4876242	1366	Q16658	FSCN1	Fascin	yes	yes	0	0	0	4	0				1													12.113	12.113	2	0.00072166	4803	DP690-4	138.4	72.045			0.837	0.97164	NaN	1	0	Median	16114000	8762600	7350900	11236	1366	10465	21914	53173;53174;53175	53173		3	9606
PAEDMEEEQAFKR	1	1	Oxidation (M)	1594.6933	0.69333623	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	1	12	0												1					11.771	11.771	3	0.043379	4602	DP690-12	59.155	59.155			0.70331	0.90664	NaN	1	0	Median	30088000	17703000	12385000	11237	959	10466	21915	53176	53176	1478	0	9606
PAFFAEK	1	0	Unmodified	808.41194	0.41194006	365	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	6	0						1											14.267	14.267	2	0.034792	7251	DP690-6	114.19	82.25			NaN	NaN	NaN	0	0	Median	8098000	0	8098000	11238	365	10467	21916	53177;53178	53177		2	9606
PAGPAGDEPAESPSETPGPR	0	1	Unmodified	1917.8704	0.87044898	2279	Q9NZT2	OGFR	Opioid growth factor receptor	yes	no	0	0	0	3	0			1														12.572	12.572	2	3.1904000000000004E-30	5334	DP690-3	233.52	188.24			0.47945	0.54056	NaN	1	0	Median	9000600	6004200	2996400	11239	2279	10468	21917	53179;53180;53181;53182	53180		4	9606
PAGPAGDEPAESPSETPGPSPAGPTR	0	1	Unmodified	2428.1143	0.11426107	2279	Q9NZT2	OGFR	Opioid growth factor receptor	yes	no	0	0	0	3	0			2														13.4	13.4	2	3.8506E-37	6577	DP690-3	211.49	178.29			NaN	NaN	NaN	0	0	Median	3453200	3453200	0	11240	2279	10469	21918;21919	53183;53184	53183		2	9606
PAGVLGAVNKPLSATGR	1	1	Unmodified	1606.9155	0.91548909	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	1	10	0										1							14.419	14.419	3	3.3598E-07	8644	DP690-10	142.95	121.55			0.73589	0.85245	NaN	1	0	Median	263610000	153970000	109640000	11241	1377	10470	21920	53185;53186	53185		2	9606
PAPAVGEAEDKENQQATSGPNQPSVR	1	1	Unmodified	2676.2739	0.27394961	507	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	1	11.7	3.62				1	1							4	1	1	3		12.201	12.201	3	1.2958E-31	4889	DP690-13	201.15	181.46			0.69701	0.76633	25.581	3	0	Median	171780000	97466000	74316000	11242	507	10471	21921;21922;21923;21924;21925;21926;21927;21928;21929;21930;21931	53187;53188;53189;53190;53191;53192;53193;53194;53195;53196;53197;53198;53199;53200;53201;53202;53203;53204;53205;53206;53207;53208	53192		22	9606
PAPVAQPPAAAPPSAVGSSAAAPR	0	1	Unmodified	2137.128	0.12800107	1431	Q9Y6H1;Q5T1J5	CHCHD2;CHCHD2P9	Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial	yes	no	0	0	0	16	0																1	14.235	14.235	2	3.4314E-06	7573	DP690-16	146.84	103.34			NaN	NaN	NaN	0	0	Median	0	0	0	11243	1431	10472	21932	53209	53209		1	9606
PAPVAVAAAATAAAYGGYPTAHTATDYGYTQR	0	1	Unmodified	3153.5156	0.51557687	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	11	0											1						18.877	18.877	3	3.1544E-12	14996	DP690-11	121.3	91.344			NaN	NaN	NaN	0	0	Median	0	0	0	11244	1889	10473	21933	53210	53210		1	9606
PAQPQEHPFASSR	0	1	Unmodified	1450.6953	0.69532556	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	8.33	3.77			1								2						10.496	10.496	3	2.0344E-05	2857	DP690-11	132.14	89.341			0.70236	0.78012	5.6161	2	0	Median	323660000	150600000	173060000	11245	1333	10474	21934;21935;21936	53211;53212;53213;53214;53215;53216;53217	53211		7	9606
PATALCGVVSADGK	1	0	Unmodified	1344.6708	0.6707503	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10	0										1							14.609	14.609	2	0.0057914	8929	DP690-10	127.87	83.91			NaN	NaN	NaN	0	0	Median	75998000	75998000	0	11246	1377	10475	21937	53218;53219	53218		2	9606
PATEAELLTCHSAEYVGHLR	0	1	Unmodified	2253.0848	0.084815622	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	3	0.632		1	3	1													16.469	16.469	3;4	2.478E-34	10422	DP690-3	271.68	271.68			0.72276	0.72979	11.094	4	0	Median	1318300000	746460000	571790000	11247	2316	10476	21938;21939;21940;21941;21942	53220;53221;53222;53223;53224;53225;53226;53227;53228;53229;53230;53231;53232;53233;53234;53235	53229		16	9606
PAVEASTGGEATQETGKEEAGKEEPPPLTPPAR	2	1	Unmodified	3330.6216	0.62155808	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	2	10	0										1							13.451	13.451	4	3.0802E-08	7271	DP690-10	110.07	88.814			0.56379	0.64335	NaN	1	0	Median	101230000	57069000	44162000	11248	2065	10477	21943	53236;53237;53238	53237		3	9606
PAYHSSLMDPDTK	1	0	Oxidation (M)	1476.6555	0.65549416	140	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	0	1	0	13	3.56								1							1	1	10.725	10.725	3	8.8756E-08	3263	DP690-16	170.95	131.32			0.62487	0.71854	26.453	2	0	Median	112530000	87562000	24972000	11249	140	10478	21944;21945;21946	53239;53240;53241;53242;53243	53241	160	5	9606
PEFLEDPSVLTK	1	0	Unmodified	1373.7078	0.70784731	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	12	0												1					18.511	18.511	2	3.1535E-10	13855	DP690-12	215.87	154.2			0.67675	0.7849	NaN	1	0	Median	109890000	56486000	53400000	11250	723	10479	21947	53244;53245	53244		2	9606
PFVPNVHAAEFVPSFLR	0	1	Unmodified	1926.0152	0.015203139	1624	Q8IYD1	GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	yes	yes	0	0	0	3	0			1														20.662	20.662	3	0.0008163	15974	DP690-3	82.942	64.362			0.72776	0.8086	NaN	1	0	Median	5726500	3504100	2222400	11251	1624	10480	21948	53246;53247	53247		2	9606
PGGLLLGDVAPNFEANTTVGR	0	1	Unmodified	2097.0855	0.085467549	618	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	7	0							1										20.601	20.601	2	7.2264E-20	15327	DP690-7	194.77	194.77			0.86356	0.98577	NaN	1	0	Median	5148200	2736800	2411300	11252	618	10481	21949	53248;53249	53248		2	9606
PGHLQEGFGCVVTNR	0	1	Unmodified	1669.7995	0.79947306	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	13.7	0.943													2		1		14.035	14.035	2;3	2.3422E-07	7348	DP690-13	188.19	159.87			0.82273	0.86657	12.549	3	0	Plateau	1194600000	643420000	551170000	11253	1678	10482	21950;21951;21952	53250;53251;53252;53253;53254;53255;53256;53257	53251		8	9606
PGHLQEGFGCVVTNR	0	1	Acetyl (Protein N-term)	1711.81	0.81003775	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	1	0	0	13	0													3				14.54	14.54	2;3	1.8578E-10	8598	DP690-13	212.09	135.95			0.86378	1.0536	12.279	2	0	Median	85693000	44308000	41385000	11254	1678	10482	21953;21954;21955	53258;53259;53260;53261	53259		4	9606
PGLVDSNPAPPESQEK	1	0	Unmodified	1663.8053	0.80532952	1242	Q14061	COX17	Cytochrome c oxidase copper chaperone	yes	yes	0	0	0	8	0								1									13.31	13.31	2	1.8589E-09	6108	DP690-8	193.49	165.11			0.59398	0.68284	NaN	1	0	Median	6305500	3649800	2655700	11255	1242	10483	21956	53262;53263;53264;53265	53262		4	9606
PGLVDSNPAPPESQEK	1	0	Acetyl (Protein N-term)	1705.8159	0.81589421	1242	Q14061	COX17	Cytochrome c oxidase copper chaperone	yes	yes	1	0	0	8	0								1									13.872	13.872	2	0.0038421	6841	DP690-8	111.12	73.426			NaN	NaN	NaN	0	0	Median	0	0	0	11256	1242	10483	21957	53266	53266		1	9606
PGPTPSGTNVGSSGR	0	1	Unmodified	1369.6586	0.65860571	922	P60468	SEC61B	Protein transport protein Sec61 subunit beta	yes	yes	0	0	0	12	4								1								1	10.456	10.456	2	2.338E-14	3036	DP690-8	216.91	194.27			0.60879	0.65957	3.842	2	0	Median	430690000	260460000	170230000	11257	922	10484	21958;21959	53267;53268;53269;53270;53271;53272;53273;53274;53275	53271		9	9606
PGPTPSGTNVGSSGR	0	1	Acetyl (Protein N-term)	1411.6692	0.66917039	922	P60468	SEC61B	Protein transport protein Sec61 subunit beta	yes	yes	1	0	0	14	3.46								1								3	10.79	10.79	2	3.7094E-05	3196	DP690-16	161.93	148.81			0.66569	0.77779	5.947	2	0	Median	48773000	29530000	19242000	11258	922	10484	21960;21961;21962;21963	53276;53277;53278;53279;53280;53281;53282	53277		7	9606
PGTYVIYVR	0	1	Unmodified	1066.5811	0.58113065	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							15.781	15.781	2	0.00027685	10724	DP690-10	183.9	157.96			0.68719	0.79798	NaN	1	0	Median	307790000	178630000	129160000	11259	250	10485	21964	53283;53284	53284		2	9606
PGVFDLINK	1	0	Unmodified	1001.5546	0.55458155	259	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	14	0														1			19.38	19.38	2	1.3616E-06	14817	DP690-14	171.38	109.28			NaN	NaN	NaN	0	0	Median	14769000	14769000	0	11260	259	10486	21965	53285;53286	53285		2	9606
PHSVSLNDTETR	0	1	Unmodified	1354.6477	0.64770667	2293	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	0	15	0															1		10.568	10.568	3	1.7199E-05	2985	DP690-15	181.31	129.55			0.73476	0.79881	NaN	1	0	Median	152540000	90968000	61576000	11261	2293	10487	21966	53287;53288;53289;53290;53291	53291		5	9606
PIDVQVITHHMQR	0	1	Oxidation (M)	1588.8144	0.81439484	940	P61158	ACTR3	Actin-related protein 3	yes	yes	0	1	0	13	0													1				12.531	12.531	4	0.03425	5311	DP690-13	49.356	30.944			1.9279	2.372	NaN	1	0	Median	16671000	5236600	11435000	11262	940	10488	21967	53292;53293	53292	1460	2	9606
PIKPSPPYFGLLLASVGR	1	1	Unmodified	1911.0982	0.098204487	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	1	5.5	1.71			1	1	1	1	1	1									21.309	21.309	3	2.1624E-11	16059	DP690-4	165.66	156.46			0.61496	0.69164	13.602	6	0	Median	45962000	28235000	17727000	11263	516	10489	21968;21969;21970;21971;21972;21973	53294;53295;53296;53297;53298;53299;53300;53301;53302;53303;53304;53305;53306;53307;53308	53297		15	9606
PIPYIYGSR	0	1	Unmodified	1064.5655	0.56548059	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	4	0				1													16.543	16.543	2	0.0025375	10621	DP690-4	97.798	69.375			0.76809	0.89496	NaN	1	0	Median	12035000	7007800	5027200	11264	469	10490	21974	53309	53309		1	9606
PLFLVHPIEGSTTVFHSLASR	0	1	Unmodified	2307.2376	0.23755152	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															19.022	19.022	4	5.3449E-05	12447	DP690-2	110.37	110.37			0.83967	0.87443	NaN	1	0	Median	4933100	2654200	2278800	11265	789	10491	21975	53310	53310		1	9606
PLFPHVLCHNCAVEFNFGQK	1	0	Unmodified	2413.146	0.14597609	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	3	0			1														17.937	17.937	4	0.003071	12574	DP690-3	57.616	48.364			0.99812	1.0629	NaN	1	0	Median	27695000	14782000	12914000	11266	1078	10492	21976	53311;53312	53311		2	9606
PLHISTFINELDSGFR	0	1	Unmodified	1844.9421	0.94209778	1340	Q15631	TSN	Translin	yes	yes	0	0	0	7	0							1										21.523	21.523	3	3.4484E-05	16385	DP690-7	122.33	100.97			0.86708	0.98482	NaN	1	0	Median	24214000	13406000	10808000	11267	1340	10493	21977	53313;53314	53314		2	9606
PLHLHIIPTEPFPTTR	0	1	Unmodified	1868.0309	0.030853203	202	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	10	0										1							16.94	16.94	4	0.065634	12414	DP690-10	42.682	1.8252			NaN	NaN	NaN	0	0	Median	49157000	49157000	0	11268	202	10494	21978	53315	53315		1	9606
PLIEVGELLDLTR	0	1	Unmodified	1466.8344	0.83444481	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										1							23.42	23.42	2	0.033585	21325	DP690-10	89.283	35.811			NaN	NaN	NaN	0	0	Median	2470800	2470800	0	11269	2065	10495	21979	53316	53316		1	9606
PLISVYSEK	1	0	Unmodified	1034.5648	0.56481189	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	11	2									1				1				15.294	15.294	2	0.0016554	9195	DP690-13	118.74	64.132			0.78243	0.92333	11.571	2	0	Median	223170000	118800000	104370000	11270	681	10496	21980;21981	53317;53318;53319;53320;53321	53318		5	9606
PLISVYSEKGESSGK	2	0	Unmodified	1579.8094	0.80935227	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	13	0													1				13.318	13.318	3	0.005799	6460	DP690-13	103.83	66.652			NaN	NaN	NaN	0	0	Median	87957000	0	87957000	11271	681	10497	21982	53322	53322		1	9606
PLMQNRGVSCKVEMK	2	1	2 Oxidation (M)	1807.8743	0.87429426	1262	Q14202	ZMYM3	Zinc finger MYM-type protein 3	yes	yes	0	2	2	10	0										1							20.223	20.223	2	0.049553	16939	DP690-10	42.802	10.96			0.33461	0.38183	NaN	1	0	Median	76319000	54585000	21734000	11272	1262	10498	21983	53323	53323		1	9606
PLSPANVPALPGETVTSPVR	0	1	Unmodified	2001.0895	0.089490294	1621	Q8IY33	MICALL2	MICAL-like protein 2	yes	yes	0	0	0	10	0										1							19.429	19.429	2	0.023546	15887	DP690-10	77.644	58.003			0.74174	0.91783	NaN	1	0	Median	109670000	60983000	48686000	11273	1621	10499	21984	53324;53325;53326	53324		3	9606
PLTQVGGDHIK	1	0	Unmodified	1163.6299	0.62987176	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							11.009	11.009	3	0.0079925	3659	DP690-10	91.313	46.333			NaN	NaN	NaN	0	0	Median	7040600	0	7040600	11274	250	10500	21985	53327;53328	53327		2	9606
PLVALLDGR	0	1	Unmodified	952.57057	0.57056597	908	P56545;Q13363	CTBP2;CTBP1	C-terminal-binding protein 2;C-terminal-binding protein 1	yes	no	0	0	0	13	0													1				18.175	18.175	2	4.8389E-05	12975	DP690-13	176.41	126.39			0.82024	0.94153	NaN	1	0	Median	210390000	114080000	96316000	11275	908	10501	21986	53329;53330;53331;53332;53333	53329		5	9606
PLVDPACITSIQPGAPK	1	0	Unmodified	1762.9288	0.9287559	350	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	0	0	12	0												1					18.309	18.309	2	0.0027565	13638	DP690-12	80.522	57.495			0.49042	0.59544	NaN	1	0	Median	7381800	4567600	2814200	11276	350	10502	21987	53334	53334		1	9606
PLVLPSPLVTPGSNSQER	0	1	Unmodified	1890.0211	0.021076378	1914	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	11	0											1						19.055	19.055	2	0.027904	15253	DP690-11	97.953	64.192			NaN	NaN	NaN	0	0	Median	0	0	0	11277	1914	10503	21988	53335	53335		1	9606
PLVPEVSIK	1	0	Unmodified	980.59063	0.59063271	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															16.598	16.598	2	0.019039	9658	DP690-2	80.438	31.877			0.97643	0.97937	NaN	1	0	Median	5146200	2372400	2773700	11278	602	10504	21989	53336;53337	53337		2	9606
PLVQTIFEGGK	1	0	Unmodified	1187.655	0.65502388	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	10	1									1		1						17.915	17.915	2	0.0025054	12300	DP690-9	93.667	63.412			1.0408	1.3252	NaN	1	0	Median	140280000	136040000	4243400	11279	1950	10505	21990;21991	53338;53339	53339		2	9606
PMCIPPSYADLGK	1	0	Unmodified	1447.684	0.68395752	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	14	0														1			17.261	17.261	2	4.3742E-05	12030	DP690-14	147.3	109.96			0.66201	0.79807	NaN	1	0	Median	97436000	60564000	36872000	11280	744	10506	21992	53340;53341;53342;53343	53341		4	9606
PMCIPPSYADLGK	1	0	Oxidation (M)	1463.6789	0.67887214	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	1	0	14	0														1			15.477	15.477	2	0.024321	9534	DP690-14	89.9	46.092			NaN	NaN	NaN	0	0	Median	37812000	37812000	0	11281	744	10506	21993	53344;53345	53345	1095	2	9606
PMCVESFSDYPPLGR	0	1	Oxidation (M)	1769.7753	0.77529172	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	0	13	0													1				17.672	17.672	2	9.7092E-08	12286	DP690-13	195.51	168.08			0.60076	0.72972	NaN	1	0	Median	51575000	34463000	17112000	11282	1031	10507	21994	53346;53347;53348;53349	53346	1567	4	9606
PMCVESFSDYPPLGR	0	1	Unmodified	1753.7804	0.7803771	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	13	0													1				19.03	19.03	2	2.3959E-05	14215	DP690-13	187.42	148.61			0.77017	0.93836	NaN	1	0	Median	43240000	24205000	19035000	11283	1031	10507	21995	53350;53351	53350		2	9606
PMFIVNTNVPR	0	1	Acetyl (Protein N-term)	1328.6911	0.69109181	487	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	1	0	0	10.7	3.77								2								1	18.009	18.009	2	0.00011578	10304	DP690-8	199.46	199.46			0.66819	0.67203	5.5856	3	0	Plateau	361500000	214060000	147440000	11284	487	10508	21996;21997;21998	53352;53353;53354;53355;53356;53357	53355		6	9606
PMFIVNTNVPR	0	1	Acetyl (Protein N-term);Oxidation (M)	1344.686	0.68600643	487	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	1	1	0	10.7	3.77								2								1	16.865	16.865	2	3.2266E-05	10555	DP690-8	138.06	117.09			0.8107	0.87312	31.823	2	0	Median	228700000	130600000	98100000	11285	487	10508	21999;22000;22001	53358;53359;53360;53361;53362;53363;53364;53365	53363	606	8	9606
PMFIVNTNVPR	0	1	Oxidation (M)	1302.6754	0.67544174	487	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	1	0	8	0								2									16.72	16.72	2	8.7303E-06	9098	DP690-8	195.32	175.03			0.71262	0.73564	13.521	2	0	Median	579990000	341590000	238400000	11286	487	10508	22002;22003	53366;53367;53368;53369;53370;53371;53372;53373	53368	606	8	9606
PMFIVNTNVPR	0	1	Unmodified	1286.6805	0.68052712	487	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	0	8	0								1									17.412	17.412	2	1.8882E-06	10679	DP690-8	220.51	188.75			0.69254	0.7227	NaN	1	0	Median	79308000	45178000	34130000	11287	487	10508	22004	53374;53375;53376;53377	53376		4	9606
PMGDLLDQIFIHR	0	1	Oxidation (M)	1569.7973	0.79734779	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	1	0	11	0											2						21.08	21.08	3	8.9065E-05	19058	DP690-11	118.37	102.43			0.85631	1.0446	6.5219	2	0	Median	34693000	19563000	15131000	11288	144	10509	22005;22006	53378;53379;53380;53381;53382	53381	161	5	9606
PMGDLLDQIFIHR	0	1	Unmodified	1553.8024	0.80243317	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	0	11	0											1						21.767	21.767	3	1.2533E-06	18978	DP690-11	193.28	130.98			0.72832	0.86908	NaN	1	0	Median	35840000	19334000	16506000	11289	144	10509	22007	53383;53384;53385;53386	53385		4	9606
PMGSLQPLATLYLLGMLVASCLGR	0	1	Acetyl (Protein N-term);Oxidation (M)	2618.3634	0.36342201	389	P06127	CD5	T-cell surface glycoprotein CD5	yes	yes	1	1	0	9	0									1								23.779	23.779	2	0.022525	19231	DP690-9	46.319	13.053			0.87156	1.0897	NaN	1	0	Median	4234100	2379800	1854200	11290	389	10510	22008	53387	53387	416	1	9606
PMIHELLTEGR	0	1	Unmodified	1294.6704	0.67035637	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	11	0											1						15.308	15.308	3	0.044334	9853	DP690-11	68.536	45.31			NaN	NaN	NaN	0	0	Median	23414000	0	23414000	11291	1300	10511	22009	53388	53388		1	9606
PMLDSVATNR	0	1	Oxidation (M)	1118.539	0.53900784	2170	Q9HCR9	PDE11A	Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A	yes	yes	0	1	0	12.5	0.5												1	1				18.242	18.242	2	0.019512	13236	DP690-13	81.191	12.015			0.89948	1.0647	13.816	2	0	Median	197400000	102660000	94739000	11292	2170	10512	22010;22011	53389;53390	53390	2656	2	9606
PMNIQLVTSQIDAQR	0	1	Oxidation (M)	1728.8829	0.88286834	1574	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	1	0	15	0															1		16.75	16.75	2	1.9682E-05	11139	DP690-15	129.82	97.756			0.77435	0.89481	NaN	1	0	Median	6691600	3692600	2999000	11293	1574	10513	22012	53391;53392;53393;53394	53394	2242	4	9606
PMTSSMHYANSSYNR	0	1	Oxidation (M)	1760.7247	0.72465314	2574				yes	yes	0	1	0	4	0				1													15.046	15.046	2	0.034821	8570	DP690-4	66.595	55.985	+		2.0219	2.3541	NaN	1	0	Median	10194000	3211700	6981800	11294	2574	10514	22013	53395	53395	2989	1	9606
PNTLTLVHVR	0	1	Unmodified	1148.6666	0.66659162	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	8.8	2.99			1						1	1	2						13.845	13.845	3	0.00021444	7777	DP690-10	114.97	63.206			0.75753	0.94333	14.564	2	0	Median	110680000	70757000	39922000	11295	272	10515	22014;22015;22016;22017;22018	53396;53397;53398;53399;53400;53401;53402;53403;53404;53405;53406	53399		11	9606
PPLSGALASITETIQVHR	0	1	Unmodified	1889.0371	0.037060793	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	3	0			1														20.272	20.272	3	0.021494	15457	DP690-3	76.526	51.161			NaN	NaN	NaN	0	0	Median	5089600	5089600	0	11296	2316	10516	22019	53407;53408	53407		2	9606
PPPQGDVTALFLGPPGLGK	1	0	Unmodified	1860.0145	0.014534437	1766	Q8WZA9	IRGQ	Immunity-related GTPase family Q protein	yes	yes	0	0	0	4	0				1													21.217	21.217	2	0.0054804	16094	DP690-4	72.321	53.909			0.45906	0.48766	NaN	1	0	Median	1452500	1049500	402990	11297	1766	10517	22020	53409;53410;53411	53409		3	9606
PPSPDVIVLSDNEQPSSPR	0	1	Unmodified	2033.0065	0.006548526	1595	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	9	0									1								21.514	21.514	3	0.082364	16479	DP690-9	32.858	2.2647			0.80952	0.9949	NaN	1	0	Median	2315800	1192400	1123400	11298	1595	10518	22021	53412	53412		1	9606
PPYTVVYFPVR	0	1	Unmodified	1336.718	0.71795849	432	P09211	GSTP1	Glutathione S-transferase P	yes	yes	0	0	0	11	4							1								1		19.065	19.065	2	0.00010297	13382	DP690-7	171.99	153.55			0.84671	0.95116	NaN	1	0	Median	35623000	17404000	18220000	11299	432	10519	22022;22023	53413;53414;53415	53415		3	9606
PQAPATVGLAFR	0	1	Unmodified	1226.6772	0.6771563	1328	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	0	8	0								1									16.459	16.459	2	0.001399	9634	DP690-8	137.05	82.323			NaN	NaN	NaN	0	0	Median	20476000	0	20476000	11300	1328	10520	22024	53416;53417	53416		2	9606
PQYQTWEEFSR	0	1	Acetyl (Protein N-term)	1511.6681	0.66810776	795	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	1	0	0	16	0																1	18.173	18.173	2	0.001263	12548	DP690-16	123.86	82.746			NaN	NaN	NaN	0	0	Median	1596600	1596600	0	11301	795	10521	22025	53418;53419;53420	53418		3	9606
PQYQTWEEFSR	0	1	Unmodified	1469.6575	0.65754307	795	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	0	0	0	8	0								1									17.114	17.114	2	0.051301	10462	DP690-8	61.593	36.157			0.65155	0.79017	NaN	1	0	Median	2303800	1330700	973110	11302	795	10521	22026	53421	53421		1	9606
PRPPPSQLRPPSVLLATVR	0	3	Unmodified	2080.2269	0.22692725	15	A6NKF1	SAC3D1	SAC3 domain-containing protein 1	yes	yes	0	0	2	14	0														1			15.967	15.967	4	0.0067325	10237	DP690-14	71.143	58.476			0.36723	0.39723	NaN	1	0	Median	45168000	27422000	17746000	11303	15	10522	22027	53422;53423	53422		2	9606
PRPPTLLSQEQIK	1	1	Unmodified	1505.8566	0.85657723	902	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	1	3	0			1														13.932	13.932	3	0.055841	7251	DP690-3	48.704	34.017			0.68225	0.75667	NaN	1	0	Median	17129000	10482000	6647000	11304	902	10523	22028	53424	53424		1	9606
PSEDTGLATPARYREHR	0	3	Unmodified	1954.9609	0.96093574	1395	Q4G112	HSF5	Heat shock factor protein 5	yes	yes	0	0	2	11	0											1						25.336	25.336	2	0.060644	23295	DP690-11	55.98	55.98			1.4111	1.4972	NaN	1	0	Median	2151200	960120	1191100	11305	1395	10524	22029	53425	53425		0	9606
PSEGDEDCLPASK	1	0	Unmodified	1403.5875	0.58747418	1040	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	15	0															1		11.696	11.696	2	3.7329E-05	4337	DP690-15	155.33	135.19			0.79754	0.93105	NaN	1	0	Median	6560400	3722900	2837500	11306	1040	10525	22030	53426;53427	53427		2	9606
PSETPQAEVGPTGCPHR	0	1	Unmodified	1818.8319	0.8318954	666	P35520	CBS	Cystathionine beta-synthase	yes	yes	0	0	0	4	0				2													11.193	11.193	3	2.0642000000000002E-25	3445	DP690-4	268.18	235.27			0.509	0.57399	16.697	2	0	Median	55017000	34219000	20797000	11307	666	10526	22031;22032	53428;53429;53430;53431;53432;53433	53431		5	9606
PSETPQAEVGPTGCPHR	0	1	Acetyl (Protein N-term)	1860.8425	0.84246009	666	P35520	CBS	Cystathionine beta-synthase	yes	yes	1	0	0	4	0				3													11.459	11.459	2;3	0.0004712	3676	DP690-4	92.575	81.055			0.73487	0.84372	32.841	2	0	Median	29594000	16110000	13483000	11308	666	10526	22033;22034;22035	53434;53435;53436;53437	53435		4	9606
PSGEAFVELESEDEVK	1	0	Unmodified	1763.8101	0.81014013	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	13	0													1				17.869	17.869	2	2.0517E-17	12640	DP690-13	220.37	197.65			0.74879	0.84906	NaN	1	0	Median	126830000	69981000	56849000	11309	639	10527	22036	53438;53439;53440;53441	53438		4	9606
PSGEEVLQDIQVMLK	1	0	Oxidation (M)	1700.8655	0.86548694	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	0	11	0											1						20.601	20.601	2	1.9808E-05	17516	DP690-11	128.57	128.57			1.1913	1.4396	NaN	1	0	Median	46699000	20809000	25890000	11310	652	10528	22037	53442;53443	53443	913	2	9606
PSGEEVLQDIQVMLK	1	0	Unmodified	1684.8706	0.87057232	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	11	0											1						23.593	23.593	2	1.6041E-39	21222	DP690-11	336.33	264.24			0.6963	0.84815	NaN	1	0	Median	35250000	20941000	14309000	11311	652	10528	22038	53444;53445;53446;53447	53445		4	9606
PSKGPLQSVQVFGR	1	1	Unmodified	1498.8256	0.82561145	969	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	1	16	0																1	15.449	15.449	3	0.00013296	9212	DP690-16	110.25	91.193			0.87315	0.94143	NaN	1	0	Median	60834000	29054000	31780000	11312	969	10529	22039	53448;53449	53449		2	9606
PSPFSKLDPKVK	3	0	Unmodified	1341.7656	0.76563696	664	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	2	13	0													1				11.38	11.38	3	0.046752	3816	DP690-13	54.343	11.036			0.92319	0.96705	NaN	1	0	Median	38890000	19170000	19720000	11313	664	10530	22040	53450;53451	53450		2	9606
PSQMEHAMETMMFTFHK	1	0	4 Oxidation (M)	2145.8628	0.86280288	930	P60903	S100A10	Protein S100-A10	yes	yes	0	4	0	16	0																2	11.834	11.834	3;4	0.001	4434	DP690-16	92.427	81.8			0.77868	0.84355	9.8542	2	0	Median	541470000	306400000	235070000	11314	930	10531	22041;22042	53452;53453;53454;53455;53456;53457;53458	53454	1441;1442;1443;1444	7	9606
PSQMEHAMETMMFTFHK	1	0	Acetyl (Protein N-term);3 Oxidation (M)	2171.8785	0.87845294	930	P60903	S100A10	Protein S100-A10	yes	yes	1	3	0	16	0																1	12.202	12.202	3	0.0033016	4948	DP690-16	72.187	59.022			0.69384	0.75319	NaN	1	0	Median	129990000	76315000	53677000	11315	930	10531	22043	53459;53460	53459	1441;1442;1443;1444	2	9606
PSQMEHAMETMMFTFHK	1	0	Acetyl (Protein N-term);4 Oxidation (M)	2187.8734	0.87336756	930	P60903	S100A10	Protein S100-A10	yes	yes	1	4	0	16	0																1	12.398	12.398	3	0.0025615	5155	DP690-16	73.593	69.238			0.84523	0.96168	NaN	1	0	Median	43009000	24383000	18626000	11316	930	10531	22044	53461;53462;53463;53464	53464	1441;1442;1443;1444	4	9606
PSQMEHAMETMMFTFHK	1	0	3 Oxidation (M)	2129.8679	0.86788825	930	P60903	S100A10	Protein S100-A10	yes	yes	0	3	0	16	0																1	12.974	12.974	4	0.00519	5899	DP690-16	58.164	55.44			0.79761	0.93181	NaN	1	0	Median	23089000	13681000	9407800	11317	930	10531	22045	53465	53465	1441;1442;1443;1444	1	9606
PSSDIWYIFER	0	1	Unmodified	1411.6772	0.67721588	2576				yes	yes	0	0	0	12	4								1								1	10.533	10.533	3	0.0020319	3034	DP690-16	86.344	63.459	+		0.85917	0.95375	1.5895	2	0	Median	230680000	124920000	105750000	11318	2576	10532	22046;22047	53466;53467;53468	53466		3	9606
PSSLLGAAMPASTSAAALQEALENAGR	0	1	Oxidation (M)	2599.2912	0.29117958	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	1	0	10.5	0.5										1	1						21.658	21.658	2	3.4964E-69	18939	DP690-10	314.11	314.11			0.72863	0.90588	NaN	1	0	Median	90973000	46958000	44015000	11319	272	10533	22048;22049	53469;53470;53471;53472;53473;53474;53475	53471	295	7	9606
PSSLLGAAMPASTSAAALQEALENAGR	0	1	Unmodified	2583.2963	0.29626496	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10.5	0.5										1	1						22.711	22.711	2	1.3545E-57	20125	DP690-11	266.44	242.98			0.69582	0.86506	18.124	2	0	Median	25824000	16963000	8860700	11320	272	10533	22050;22051	53476;53477;53478;53479;53480;53481;53482;53483	53481		8	9606
PSSSPVIFAGGQDR	0	1	Unmodified	1416.6997	0.69974224	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	10	4						1								1			14.922	14.922	2	6.9492E-14	8709	DP690-14	218.55	157.91			0.87693	1.0085	19.78	2	0	Median	161030000	85498000	75535000	11321	1326	10534	22052;22053	53484;53485;53486;53487;53488;53489	53484		6	9606
PSTLCADGQPQAPAEEVR	0	1	Unmodified	1924.8949	0.89488959	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	11	0											2						13.863	13.863	2	8.5974999999999995E-137	7690	DP690-11	340.81	265.3			0.51207	0.61069	NaN	1	0	Median	68323000	54419000	13904000	11322	1653	10535	22054;22055	53490;53491;53492;53493;53494	53494		5	9606
PTFIGTEPSLGVK	1	0	Unmodified	1344.7289	0.7289171	888	P54687	BCAT1	Branched-chain-amino-acid aminotransferase, cytosolic	yes	yes	0	0	0	6	0						1											17.18	17.18	2	0.0036052	10746	DP690-6	88.155	61.184			0.77616	0.88324	NaN	1	0	Median	7329500	4508000	2821600	11323	888	10536	22056	53495;53496	53495		2	9606
PVALINNQFLPYPYYAK	1	0	Unmodified	2010.0615	0.06148463	35	CON__P02668			yes	yes	0	0	0	4.4	1.85		1	1	1		1	1										21.013	21.013	2	6.7313E-36	16385	DP690-3	284.47	246.3		+	NaN	NaN	NaN	0	0	Median	62330000	62330000	0	11324	35	10537	22057;22058;22059;22060;22061	53497;53498;53499;53500;53501;53502;53503;53504;53505	53499		9	
PVCGLHSVISPSDGR	0	1	Unmodified	1579.7777	0.77767498	2335	Q9UG56	PISD	Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain	yes	yes	0	0	0	14	0														1			13.627	13.627	3	0.0073469	6953	DP690-14	66.285	43.294			0.67921	0.81631	NaN	1	0	Median	79818000	43685000	36133000	11325	2335	10538	22062	53506	53506		1	9606
PVILLPEDTPPFLELK	1	0	Unmodified	1820.0335	0.033538545	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	6.5	3.5			1							1							23.285	23.285	2	0.00042469	21082	DP690-10	107.85	107.85			0.7997	0.89692	21.119	2	0	Median	14038000	4495400	9542100	11326	858	10539	22063;22064	53507;53508;53509;53510;53511	53507		5	9606
PVIVEPLEQLDDEDGLPEK	1	0	Unmodified	2134.0681	0.06814573	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	11	0											1						20.374	20.374	2	7.736E-23	17054	DP690-11	225.21	199.62			0.66884	0.80899	NaN	1	0	Median	60430000	37889000	22540000	11327	566	10540	22065	53512;53513;53514	53512		3	9606
PVLLQVAESAYR	0	1	Unmodified	1344.7402	0.74015049	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	12	0												1					18.648	18.648	2	0.00047546	14168	DP690-12	112.75	93.141			0.76616	0.90801	NaN	1	0	Median	42994000	23503000	19491000	11328	2359	10541	22066	53515	53515		1	9606
PVLNFYEANFPANVMDVIAR	0	1	Oxidation (M)	2295.1358	0.13578856	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	0	12	0												1					22.243	22.243	2	9.3497E-14	18565	DP690-12	189.33	168.75			0.69404	0.82377	NaN	1	0	Median	52307000	29905000	22402000	11329	517	10542	22067	53516;53517;53518;53519	53519	653	4	9606
PVSSAASVYAGAGGSGSR	0	1	Unmodified	1579.759	0.75904803	388	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	9.8	3.92					2								3				13.046	13.046	2	8.269099999999999E-79	5989	DP690-13	305.3	252.17			0.80691	0.86419	15.551	3	0	Median	171610000	98568000	73045000	11330	388	10543	22068;22069;22070;22071;22072	53520;53521;53522;53523;53524;53525;53526;53527;53528;53529	53524		10	9606
PVTALEYTFSR	0	1	Unmodified	1282.6558	0.65575216	889	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	14	0														1			17.75	17.75	2	0.0079182	12703	DP690-14	106.88	62.017			NaN	NaN	NaN	0	0	Median	23108000	23108000	0	11331	889	10544	22073	53530	53530		1	9606
PVTEKDLAEDAPWK	2	0	Unmodified	1597.7988	0.79878758	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										1							16.048	16.048	3	0.004247	11070	DP690-10	73.887	56.685			0.41484	0.53371	NaN	1	0	Median	54003000	38796000	15207000	11332	250	10545	22074	53531	53531		1	9606
PVTLLASLFK	1	0	Unmodified	1087.6641	0.664132	1913	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	5	0					1												21.921	21.921	2	0.0030216	16742	DP690-5	95.502	73.651			0.70857	0.71069	NaN	1	0	Median	6914800	3975600	2939200	11333	1913	10546	22075	53532;53533	53533		2	9606
PVTVEPMDQLDDEEGLPEK	1	0	Oxidation (M)	2155.9831	0.98309547	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	1	0	12	0												1					16.373	16.373	2	5.718300000000001E-31	10913	DP690-12	252.12	252.12			0.62117	0.74046	NaN	1	0	Median	52668000	32250000	20417000	11334	1322	10547	22076	53534;53535;53536;53537	53536	2040	4	9606
PVTVEPMDQLDDEEGLPEK	1	0	Unmodified	2139.9882	0.98818085	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	12	0												1					18.176	18.176	2	8.5864E-17	13380	DP690-12	196.18	196.18			0.53255	0.63729	NaN	1	0	Median	32723000	20608000	12115000	11335	1322	10547	22077	53538;53539;53540;53541	53539		4	9606
PYQYPALTPEQK	1	0	Unmodified	1433.7191	0.7190807	363	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	6	0						1											15.205	15.205	2	0.0004081	8426	DP690-6	114.97	81.911			1.6981	1.9407	NaN	1	0	Median	8885800	3331900	5553900	11336	363	10548	22078	53542;53543	53542		2	9606
QAAASATQTIAAAQHAASTPK	1	0	Unmodified	1994.0181	0.018116265	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															14.134	14.134	3	0.0038688	6678	DP690-2	58.835	42.555			1.1894	1.1966	NaN	1	0	Median	8730700	4561800	4169000	11337	2482	10549	22079	53544;53545	53545		2	9606
QAADMILLDDNFASIVTGVEEGR	0	1	Oxidation (M)	2479.1901	0.19006855	379	P05023;P13637;P50993;Q13733	ATP1A1;ATP1A3;ATP1A2;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4	yes	no	0	1	0	11	0											1						24.061	24.061	2	1.5102E-09	21813	DP690-11	151.62	133.82			0.53656	0.6453	NaN	1	0	Median	3451700	2029100	1422700	11338	379	10550	22080	53546	53546	403	1	9606
QAADMILLDDNFASIVTGVEEGR	0	1	Unmodified	2463.1952	0.19515393	379	P05023;P13637;P50993;Q13733	ATP1A1;ATP1A3;ATP1A2;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4	yes	no	0	0	0	11	0											1						25.277	25.277	2	6.4982E-07	23144	DP690-11	174.52	150.1			NaN	NaN	NaN	0	0	Median	666000	666000	0	11339	379	10550	22081	53547	53547		1	9606
QAANLQDCYR	0	1	Unmodified	1237.551	0.55096951	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	7	4			1								1						12.3	12.3	2	0.00077498	4978	DP690-3	110.76	92.848			0.90849	1.0582	17.612	2	0	Median	86176000	38883000	47293000	11340	736	10551	22082;22083	53548;53549;53550;53551;53552;53553	53551		6	9606
QAAPCVLFFDELDSIAK	1	0	Unmodified	1922.9448	0.94479989	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	11	0											1						24.467	24.467	2	0.00316	22263	DP690-11	141.73	108.53			NaN	NaN	NaN	0	0	Median	3548800	3548800	0	11341	893	10552	22084	53554	53554		1	9606
QAASGLVGQENAR	0	1	Unmodified	1299.6531	0.6531264	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	5	0					1												11.26	11.26	2	0.016196	3773	DP690-5	72.289	60.082			1.3382	1.3986	NaN	1	0	Median	9796200	3337100	6459100	11342	2431	10553	22085	53555	53555		1	9606
QAASSLQQASLK	1	0	Unmodified	1230.6568	0.65681479	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	9.33	3.77				1								2					12.1	12.1	2	0.00015206	4623	DP690-4	136.52	136.52			2.8048	3.0146	NaN	1	0	Median	38540000	10308000	28232000	11343	695	10554	22086;22087;22088	53556;53557;53558;53559;53560;53561	53559		6	9606
QAASTSGPTPAASQALNPQAQK	1	0	Unmodified	2123.0607	0.060709362	1790	Q92793	CREBBP	CREB-binding protein	yes	yes	0	0	0	10	0										1							13.219	13.219	2	0.0047081	6909	DP690-10	103.61	58.329			NaN	NaN	NaN	0	0	Median	0	0	0	11344	1790	10555	22089	53562	53562		1	9606
QADFEAHNILR	0	1	Unmodified	1312.6524	0.65239812	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	4	0				1													14.129	14.129	3	0.00075817	7393	DP690-4	96.113	80.021			0.90418	0.96365	NaN	1	0	Median	91235000	47598000	43637000	11345	813	10556	22090	53563;53564;53565;53566	53565		4	9606
QADLYISEGLHPR	0	1	Unmodified	1497.7576	0.75759147	702	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	yes	no	0	0	0	8	4				1								1					14.958	14.958	3	5.8052E-05	8446	DP690-4	155.88	111.52			1.5395	1.6932	NaN	1	0	Median	82801000	56363000	26438000	11346	702	10557	22091;22092	53567;53568;53569;53570;53571;53572	53570		6	9606
QADVNLVNAK	1	0	Unmodified	1070.572	0.57202253	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	4	0				1													12.506	12.506	2	6.0075E-05	5123	DP690-4	168.26	112.89			1.2931	1.3671	NaN	1	0	Median	81698000	34361000	47337000	11347	167	10558	22093	53573;53574;53575;53576	53575		4	9606
QAEEQIEHLQR	0	1	Unmodified	1379.6793	0.67934115	238	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	11	0											1						11.778	11.778	3	0.062409	4704	DP690-11	38.021	14.903			0.78306	0.93699	NaN	1	0	Median	52463000	33906000	18557000	11348	238	10559	22094	53577	53577		1	9606
QAEETYENIPGQSK	1	0	Unmodified	1592.7318	0.73183023	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			1														13.396	13.396	2	3.2564E-15	6450	DP690-3	234.39	205.63			0.99211	1.0528	NaN	1	0	Median	31686000	15943000	15743000	11349	82	10560	22095	53578;53579;53580;53581;53582;53583	53579		6	9606
QAEQLSAAGEGGDAGR	0	1	Unmodified	1515.6914	0.6913624	2205	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	0	0	0	12.3	3.77							2								4		11.377	11.377	2	7.847800000000001E-35	4070	DP690-15	266.78	192.24			0.98523	1.1326	NaN	1	0	Median	35792000	18223000	17570000	11350	2205	10561	22096;22097;22098;22099;22100;22101	53584;53585;53586;53587;53588;53589;53590;53591;53592;53593	53591		10	9606
QAGAEALSQAVAR	0	1	Unmodified	1270.663	0.6629628	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	6	4		1								1							14.035	14.035	2	0.00016083	8058	DP690-10	147.3	119.22			1.2936	1.4677	3.4153	2	0	Median	152530000	66983000	85546000	11351	1782	10562	22102;22103	53594;53595;53596;53597	53594		4	9606
QAGEVTFADAHRPK	1	1	Unmodified	1525.7637	0.76373948	1193	Q13243	SRSF5	Serine/arginine-rich splicing factor 5	yes	yes	0	0	1	14	0														1			10.809	10.809	3	1.4924E-05	3173	DP690-14	133.15	118.97			0.781	0.93309	NaN	1	0	Median	81508000	44750000	36758000	11352	1193	10563	22104	53598;53599;53600;53601	53599		4	9606
QAGVFEPTIVK	1	0	Unmodified	1187.655	0.65502388	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	4	0				1													15.999	15.999	2	0.0094871	9862	DP690-4	79.489	34.467			1.602	1.7263	NaN	1	0	Median	34213000	14101000	20112000	11353	520	10564	22105	53602;53603;53604;53605;53606	53604		5	9606
QAHLCVLASNCDEPMYVK	1	0	Oxidation (M)	2149.9595	0.95948045	582	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	1	0	16	0																2	14.771	14.771	2;3	6.648E-10	8258	DP690-16	149.31	123.85			0.85224	0.9335	NaN	1	0	Median	105190000	55068000	50125000	11354	582	10565	22106;22107	53607;53608;53609;53610;53611	53608	771	5	9606
QAHLTNQYMQR	0	1	Unmodified	1388.6619	0.66191694	471	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	6.67	3.77				2								1					10.997	10.997	3	0.00032991	3416	DP690-4	136.49	98.086			NaN	NaN	NaN	0	0	Median	0	0	0	11355	471	10566	22108;22109;22110	53612;53613;53614	53613		3	9606
QAIGIALETR	0	1	Unmodified	1070.6084	0.60840804	1935	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	3	0			1														15.669	15.669	2	0.036759	9520	DP690-3	68.657	29.352			0.87191	0.99722	NaN	1	0	Median	14212000	8399200	5813100	11356	1935	10567	22111	53615	53615		1	9606
QAILGEHPSSFR	0	1	Unmodified	1340.6837	0.68369824	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												2					13.245	13.245	2;3	0.00047099	6466	DP690-12	101.39	60.666			0.73058	0.80444	NaN	1	0	Median	340390000	195660000	144730000	11357	1750	10568	22112;22113	53616;53617;53618;53619;53620;53621	53618		6	9606
QAIPLDENEGIYVQDVK	1	0	Unmodified	1929.9684	0.96837211	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														17.932	17.932	2	2.7307E-07	12515	DP690-3	148.62	113.87			0.76013	0.80388	NaN	1	0	Median	9447000	4713900	4733100	11358	1293	10569	22114	53622	53622		1	9606
QAIVDKVPSVSSSALVSSLHLLK	2	0	Unmodified	2377.3581	0.35806058	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	1	7	4			1								1						19.419	19.419	4	2.4382E-05	14375	DP690-3	115.85	84.088			NaN	NaN	NaN	0	0	Median	30529000	0	30529000	11359	2515	10570	22115;22116	53623;53624;53625	53624		3	9606
QALDYVELSPLTQASPQR	0	1	Unmodified	2015.0324	0.032369346	2101	Q9H2D6	TRIOBP	TRIO and F-actin-binding protein	yes	yes	0	0	0	12	0												1					19.441	19.441	2	1.5808000000000002E-42	15097	DP690-12	305.69	305.69			0.44103	0.53085	NaN	1	0	Median	18094000	13213000	4880600	11360	2101	10571	22117	53626;53627;53628;53629	53627		4	9606
QALETVNDYNPLMK	1	0	Oxidation (M)	1650.7923	0.792322	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	9	0									1								16.91	16.91	2	0.005442	10942	DP690-9	87.363	72.391			0.77293	0.98706	NaN	1	0	Median	10498000	6178900	4318800	11361	1264	10572	22118	53630;53631	53631	1924	2	9606
QALHSLELHYQAFLR	0	1	Unmodified	1824.9635	0.96350192	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.8	3.54		1							1	1	1	1					17.259	17.259	4	3.6901E-05	12755	DP690-10	120.84	99.024			0.82201	0.93764	19.026	5	0	Median	872420000	485230000	387190000	11362	1319	10573	22119;22120;22121;22122;22123	53632;53633;53634;53635;53636;53637;53638;53639;53640;53641;53642;53643;53644	53633		13	9606
QALIDMNTLFTLLK	1	0	Unmodified	1619.8957	0.89566485	233	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	9.5	0.5									1	1							25.48	25.48	2	7.0259E-05	23618	DP690-10	124.38	82.994			0.81899	0.97489	7.6676	2	0	Median	5083500	2789300	2294200	11363	233	10574	22124;22125	53645;53646;53647;53648;53649;53650;53651;53652;53653	53645		9	9606
QALIDMNTLFTLLK	1	0	Oxidation (M)	1635.8906	0.89057948	233	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	1	0	10	0										1							23.026	23.026	2	0.010994	20766	DP690-10	101.35	68.261			NaN	NaN	NaN	0	0	Median	5736500	5736500	0	11364	233	10574	22126	53654	53654	232	1	9606
QALMPTLEALYR	0	1	Unmodified	1404.7435	0.74352131	1144;1790	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	0	0	0	10	0										1							20.564	20.564	2	0.047455	17551	DP690-10	79.07	62.816			0.56836	0.70976	NaN	1	0	Median	17168000	11180000	5987500	11365	1144;1790	10575	22127	53655	53655		1	9606
QALQDLLSEYMGNAGR	0	1	Unmodified	1764.8465	0.84648283	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											3						22.819	22.819	2	1.2217E-60	20269	DP690-11	273.24	209.37			NaN	NaN	NaN	0	0	Median	32150000	14448000	17702000	11366	657	10576	22128;22129;22130	53656;53657;53658;53659;53660	53656		5	9606
QALQDTLALYK	1	0	Unmodified	1262.6871	0.68705229	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							17.635	17.635	2	0.0084385	13425	DP690-10	94.692	77.974			0.78399	0.96821	NaN	1	0	Median	80716000	41642000	39075000	11367	1080	10577	22131	53661;53662;53663	53663		3	9606
QALQESLVQILQPQR	0	1	Unmodified	1749.9737	0.97373226	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	12	0												1					20.726	20.726	2	9.821599999999999E-109	16701	DP690-12	422.87	422.87			0.77257	0.91573	NaN	1	0	Median	40847000	23504000	17343000	11368	417	10578	22132	53664;53665;53666;53667	53667		4	9606
QALSALEEAGAPAPGRPSPATAAVPSSQPK	1	1	Unmodified	2855.4777	0.4777348	1621	Q8IY33	MICALL2	MICAL-like protein 2	yes	yes	0	0	1	11	0											1						15.598	15.598	3	3.4258E-18	10248	DP690-11	169.33	146.59			0.39208	0.48724	NaN	1	0	Median	41794000	26688000	15106000	11369	1621	10579	22133	53668;53669;53670	53668		3	9606
QALVAIFTHLR	0	1	Unmodified	1267.7401	0.74009091	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								18.681	18.681	3	0.00050148	13192	DP690-9	86.344	60.453			0.85664	0.96545	25.489	2	0	Median	22721000	12223000	10498000	11370	1264	10580	22134;22135	53671;53672;53673;53674;53675	53673		5	9606
QALVEFENIDSAK	1	0	Unmodified	1462.7304	0.73037367	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												1					17.508	17.508	2	8.5043E-05	12490	DP690-12	164.04	78.505			0.95559	1.0915	NaN	1	0	Median	139110000	68430000	70679000	11371	1750	10581	22136	53676;53677;53678;53679	53676		4	9606
QANKEYLLGSTAEEK	2	0	Unmodified	1679.8366	0.83662965	175	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	1	16	0																1	12.749	12.749	3	0.033147	5634	DP690-16	53.008	35.314			0.78909	0.90191	NaN	1	0	Median	14274000	7882400	6391900	11372	175	10582	22137	53680	53680		1	9606
QAPSIATIGSTCDLNLK	1	0	Unmodified	1787.9087	0.90874874	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										1							17.923	17.923	2	0.00026319	13740	DP690-10	124.12	118.75			0.95065	1.1365	NaN	1	0	Median	230170000	113040000	117140000	11373	1270	10583	22138	53681;53682;53683	53681		3	9606
QAQEYEALLNIK	1	0	Unmodified	1418.7405	0.74054442	388	P05783;CON__P05784	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	0	0	13	0													1				18.583	18.583	2	3.9106E-10	13542	DP690-13	271.26	209.57			0.82426	0.93429	NaN	1	0	Median	128060000	66708000	61349000	11374	388	10584	22139	53684;53685;53686;53687;53688	53684		5	9606
QAQIEVVPSASALIIK	1	0	Unmodified	1665.9665	0.96652161	621	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	12	4								1								1	19.426	19.426	2	3.8136E-09	13971	DP690-16	190.66	190.66			0.83614	0.96406	10.743	2	0	Median	32357000	17104000	15253000	11375	621	10585	22140;22141	53689;53690;53691;53692;53693;53694;53695;53696	53690		8	9606
QAQILASEAEK	1	0	Unmodified	1186.6194	0.61936665	2365	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	14	0														1			12.17	12.17	2	0.0054651	4952	DP690-14	87.298	62.779			0.80424	0.96348	NaN	1	0	Median	21789000	11380000	10409000	11376	2365	10586	22142	53697	53697		1	9606
QAQLAQTLQQQEQASQGLR	0	1	Unmodified	2125.0876	0.087592814	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							16.364	16.364	2	1.9714E-83	11539	DP690-10	379.08	379.08			0.8083	1.0124	NaN	1	0	Median	46436000	24398000	22038000	11377	1301	10587	22143	53698;53699;53700;53701	53699		4	9606
QAQQERDELADEIANSSGK	1	1	Unmodified	2087.972	0.97195393	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		4															14.637	14.637	2;3	3.7905E-07	7287	DP690-2	140.75	109.77			1.1022	1.085	NaN	1	0	Median	61552000	27303000	34249000	11378	668	10588	22144;22145;22146;22147	53702;53703;53704;53705;53706;53707;53708	53705		7	9606
QAQVPLAAVIKPLAR	1	1	Unmodified	1573.9668	0.96679638	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	1	7.67	3.4			1						1		1						17.564	17.564	3	4.2471E-05	12053	DP690-3	122.46	122.46			0.73316	0.83153	12.739	2	0	Median	70315000	20947000	49368000	11379	883	10589	22148;22149;22150	53709;53710;53711;53712;53713	53711		5	9606
QASPNIVIALAGNK	1	0	Unmodified	1394.7882	0.78816332	830	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	0	0	15	0															1		17.968	17.968	2	3.4194E-05	12580	DP690-15	132.32	87.566			0.77467	0.88909	NaN	1	0	Median	59250000	34710000	24540000	11380	830	10590	22151	53714;53715;53716	53714		3	9606
QASPQNLGTPGLLHPQTSPLLHSLVGQHILSVQQFTK	1	0	Unmodified	3971.1381	0.13811883	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															19.844	19.844	5	0.07712	13355	DP690-2	13.917	10.033			0.85474	0.85746	NaN	1	0	Median	5298900	2398100	2900800	11381	602	10591	22152	53717	53717		1	9606
QASPSIVIALAGNK	1	0	Unmodified	1367.7773	0.77726428	936	P61020	RAB5B	Ras-related protein Rab-5B	yes	yes	0	0	0	15	0															1		17.887	17.887	2	0.00013942	12565	DP690-15	120.63	120.63			0.71922	0.84793	NaN	1	0	Median	11954000	6044400	5910000	11382	936	10592	22153	53718;53719;53720;53721	53720		4	9606
QASQGMVGQLAAR	0	1	Unmodified	1315.6667	0.66666797	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	13	0													3				13.914	13.914	2	0.0022783	7218	DP690-13	135.43	80.059			NaN	NaN	NaN	0	0	Median	0	0	0	11383	2427	10593	22154;22155;22156	53722;53723;53724	53723		3	9606
QASRPPIQNACVADK	1	1	Unmodified	1653.8257	0.82568781	1846	Q96EU6	RRP36	Ribosomal RNA processing protein 36 homolog	yes	yes	0	0	1	15	0															1		10.567	10.567	3	0.058911	2974	DP690-15	63.681	32.066			NaN	NaN	NaN	0	0	Median	8403600	8403600	0	11384	1846	10594	22157	53725	53725		1	9606
QATINIGTIGHVAHGK	1	0	Unmodified	1615.8794	0.87943794	714	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	13	0													1				13.618	13.618	3	0.00012684	6805	DP690-13	109.1	86.247			0.89684	1.0332	NaN	1	0	Median	83999000	41117000	42882000	11385	714	10595	22158	53726;53727;53728;53729	53726		4	9606
QATQVLQEMR	0	1	Oxidation (M)	1218.6027	0.60267073	1719	Q8TD55	PLEKHO2	Pleckstrin homology domain-containing family O member 2	yes	yes	0	1	0	4	0				1													11.213	11.213	2	0.019116	3704	DP690-4	81.525	40.098			1.0297	1.1934	NaN	1	0	Median	5393000	2426600	2966400	11386	1719	10596	22159	53730	53730	2308	1	9606
QAVDVSPLR	0	1	Unmodified	983.53999	0.53999412	761	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	11.5	3.5								1							1		13.771	13.771	2	0.0011681	7047	DP690-15	124.08	67.359			0.84597	0.96173	6.9222	2	0	Median	163490000	83556000	79930000	11387	761	10597	22160;22161	53731;53732;53733;53734;53735	53731		5	9606
QAVEMKNDKSEEEQSSSSVK	3	0	Unmodified	2239.0274	0.027419902	410	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	2	14	0														1			10.229	10.229	4	0.0066327	2443	DP690-14	69.747	48.647			0.8488	0.87058	NaN	1	0	Median	18872000	8277100	10595000	11388	410	10598	22162	53736;53737	53737		2	9606
QAVFFVGQSAR	0	1	Unmodified	1208.6302	0.63020611	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							16.201	16.201	2	0.023359	11520	DP690-10	71.451	47.928			1.0506	1.3019	NaN	1	0	Median	101030000	38531000	62502000	11389	13	10599	22163	53738	53738		1	9606
QAVGGAGPPNPAINGSAPR	0	1	Unmodified	1729.886	0.88597988	613	P29353	SHC1	SHC-transforming protein 1	yes	yes	0	0	0	4	0				1													13.214	13.214	2	2.3303E-11	6142	DP690-4	169.04	142.29			0.59424	0.68933	NaN	1	0	Median	5869600	3311700	2557900	11390	613	10600	22164	53739;53740;53741;53742	53739		4	9606
QAVQILDELAEK	1	0	Unmodified	1355.7296	0.72964538	1964	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	0	0	5	0					1												18.855	18.855	2	6.6979E-05	12897	DP690-5	129.88	107.3			0.90387	0.90111	NaN	1	0	Median	58607000	34004000	24602000	11391	1964	10601	22165	53743;53744;53745;53746	53743		4	9606
QAVTNPNNTFYATK	1	0	Unmodified	1567.7631	0.76307078	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	9.5	3.2				1							2	1					13.67	13.67	2	2.0122E-13	7427	DP690-11	193.22	119.05			0.7264	0.86561	NaN	1	0	Median	97401000	43580000	53821000	11392	695	10602	22166;22167;22168;22169	53747;53748;53749;53750;53751;53752;53753;53754;53755	53748		9	9606
QAVTPPGLQEAINDLVK	1	0	Unmodified	1791.9731	0.97306355	321	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	4	0				1													22.001	22.001	2	0.0021262	16921	DP690-4	84.718	84.718			0.57234	0.60617	NaN	1	0	Median	1163100	713860	449200	11393	321	10603	22170	53756;53757	53756		2	9606
QAYEPPPPPAYR	0	1	Unmodified	1384.6776	0.67755023	1344	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	0	0	4	0				1													13.86	13.86	2	0.066987	7038	DP690-4	83.647	52.153			NaN	NaN	NaN	0	0	Median	4426500	0	4426500	11394	1344	10604	22171	53758	53758		1	9606
QAYLEAAYAAGVR	0	1	Unmodified	1381.699	0.69901396	1372	Q16831	UPP1	Uridine phosphorylase 1	yes	yes	0	0	0	10.5	3.5							1							1			16.913	16.913	2	0.0026264	10767	DP690-7	90.827	55.286			0.74236	0.8616	NaN	1	0	Median	13493000	7835300	5657900	11395	1372	10605	22172;22173	53759;53760	53760		2	9606
QAYTGNNSSQIQAAMK	1	0	Oxidation (M)	1726.7944	0.79444726	293	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	1	0	12	0												1					11.342	11.342	2	0.00010919	3991	DP690-12	124.21	106.07			0.97305	1.1812	NaN	1	0	Median	5884200	3159000	2725100	11396	293	10606	22174	53761;53762;53763;53764	53764	303	4	9606
QCGQVAAAAAAQPPASHGPER	0	1	Unmodified	2072.981	0.98101925	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	4	0				1													11.197	11.197	3	0.00016285	3741	DP690-4	101.38	85.076			0.78013	0.90306	NaN	1	0	Median	4776000	2576700	2199300	11397	342	10607	22175	53765;53766	53766		2	9606
QCLILGEQIDLLQQYR	0	1	Unmodified	1989.0353	0.035346234	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							21.792	21.792	2	0.00060915	19167	DP690-10	138.63	79.928			NaN	NaN	NaN	0	0	Median	5435700	5435700	0	11398	13	10608	22176	53767	53767		1	9606
QCLPSLDLSCK	1	0	Unmodified	1319.6214	0.62135726	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							16.942	16.942	2	9.0952E-05	12332	DP690-10	132.88	116.04			0.76396	0.90153	6.3197	2	0	Median	266150000	144860000	121290000	11399	1046	10609	22177;22178	53768;53769;53770;53771;53772;53773;53774;53775;53776;53777	53771		10	9606
QCMMFSATLSK	1	0	Oxidation (M)	1318.572	0.57196423	63	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	1	0	13	0													1				15.387	15.387	2	0.034112	9248	DP690-13	72.434	52.444			0.65384	0.75658	NaN	1	0	Median	49295000	33192000	16102000	11400	63	10610	22179	53778	53778	71	1	9606
QCQISKEDEETLAR	1	1	Unmodified	1705.7941	0.79411291	1464	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	1	12	0												1					12.104	12.104	3	0.00048323	4930	DP690-12	98	82.181			0.90815	1.0975	NaN	1	0	Median	68012000	41146000	26866000	11401	1464	10611	22180	53779;53780;53781	53779		3	9606
QCVENADLPEGEKKPIDQR	2	1	Unmodified	2225.0746	0.074644866	1935	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	2	3	0			1														11.804	11.804	4	0.041403	4469	DP690-3	54.964	26.897			1.0868	1.1189	NaN	1	0	Median	9245000	4175900	5069100	11402	1935	10612	22181	53782;53783	53783		2	9606
QDAQVVLYR	0	1	Unmodified	1090.5771	0.57710791	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									2								14.285	14.285	2	9.9956E-11	7488	DP690-9	190.26	113.49			NaN	NaN	NaN	0	0	Median	89692000	47089000	42603000	11403	1046	10613	22182;22183	53784;53785;53786	53786		3	9606
QDDSSSSASPSVQGAPR	0	1	Unmodified	1674.7445	0.74452018	17	C4AMC7;Q6VEQ5;A8K0Z3;A8MWX3	WASH3P;WASH2P;WASH1;WASH4P	Putative WAS protein family homolog 3;WAS protein family homolog 2;WAS protein family homolog 1;Putative WAS protein family homolog 4	yes	no	0	0	0	12	0												1					11.015	11.015	2	1.823E-23	3541	DP690-12	263.74	241.71			0.58461	0.71238	NaN	1	0	Median	8687500	4800200	3887300	11404	17	10614	22184	53787;53788;53789;53790	53788		4	9606
QDGPMPKPHSVSLNDTETR	1	1	Oxidation (M)	2123.9906	0.99058089	2293	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	1	1	15	0															2		10.776	10.776	3;4	5.7876E-05	3336	DP690-15	114.28	94.457			0.55824	0.62648	7.6525	2	0	Median	261860000	158870000	102980000	11405	2293	10615	22185;22186	53791;53792;53793;53794;53795;53796;53797;53798	53793	2746	8	9606
QDGPMPKPHSVSLNDTETRK	2	1	Oxidation (M)	2252.0855	0.085543904	2293	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	1	2	15	0															2		10.33	10.33	4;5	0.00013895	2670	DP690-15	102.57	68.681			0.656	0.74973	3.0495	2	0	Median	196510000	115520000	80985000	11406	2293	10616	22187;22188	53799;53800;53801;53802;53803;53804;53805	53800	2746	7	9606
QDGQFSVLFTK	1	0	Unmodified	1268.6401	0.6401021	41	CON__P12763			yes	yes	0	0	0	4	0				1													18.566	18.566	2	0.064654	13160	DP690-4	84.31	13.494		+	NaN	NaN	NaN	0	0	Median	5333400	5333400	0	11407	41	10617	22189	53806	53806		1	
QDHPSSMGVYGQESGGFSGPGENR	0	1	Oxidation (M)	2495.0408	0.040778555	1090	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	1	0	11	0											1						13.249	13.249	3	1.6476E-06	6796	DP690-11	131.64	105.12			0.93818	1.1237	NaN	1	0	Median	28534000	15288000	13246000	11408	1090	10618	22190	53807;53808;53809	53807	1712	3	9606
QDIAFAYQR	0	1	Unmodified	1110.5458	0.54580778	404	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	11.6	3.87		1						1	1	1			1	5		1	17.314	17.314	2	0.00035635	8702	DP690-9	157.33	102.61			0.8565	0.9459	12	6	0	Median	14326000000	7642499999.999999	6683999999.999999	11409	404	10619	22191;22192;22193;22194;22195;22196;22197;22198;22199;22200;22201	53810;53811;53812;53813;53814;53815;53816;53817;53818;53819;53820;53821;53822;53823;53824;53825;53826;53827;53828;53829;53830;53831;53832	53831		23	9606
QDIITLQDPTNLDK	1	0	Unmodified	1612.8308	0.83081599	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	12	0												2					18.222	18.222	2	0.0031509	13431	DP690-12	135.1	88.506			NaN	NaN	NaN	0	0	Median	0	0	0	11410	1200	10620	22202;22203	53833;53834	53833		2	9606
QDIITLQDPTNLDKFNVSNFYHVK	2	0	Unmodified	2848.4396	0.43955838	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	1	12	0												2					20.103	20.103	4	0.019804	16026	DP690-12	65.534	36.604			NaN	NaN	NaN	0	0	Median	32786000	19247000	13539000	11411	1200	10621	22204;22205	53835;53836	53836		2	9606
QDIVLTTYNILTHDYGTK	1	0	Unmodified	2094.0633	0.063335123	1278	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	11	0											1						21.734	21.734	3	0.00056016	18946	DP690-11	114.03	72.117			NaN	NaN	NaN	0	0	Median	9068800	9068800	0	11412	1278	10622	22206	53837;53838	53837		2	9606
QDLADVVQVCEGK	1	0	Unmodified	1459.6977	0.69769333	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	2	0		1															16.853	16.853	2	0.00079082	9990	DP690-2	105.46	82.448			1.0983	1.0887	NaN	1	0	Median	3104100	1486000	1618100	11413	1264	10623	22207	53839	53839		1	9606
QDLLAYLQR	0	1	Unmodified	1118.6084	0.60840804	657;590	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	11	0											1						19.649	19.649	2	0.0038473	16110	DP690-11	104.44	51.651			0.86484	1.0406	NaN	1	0	Median	74549000	44362000	30187000	11414	657;590	10624	22208	53840	53840		1	9606
QDLLNVLAR	0	1	Unmodified	1040.5978	0.59784335	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	12	0												1					18.952	18.952	2	0.00080176	14495	DP690-12	214.11	151.45			0.87514	1.0402	NaN	1	0	Median	63246000	34395000	28851000	11415	1814	10625	22209	53841;53842;53843;53844	53841		4	9606
QDLMNIAGTTLSSK	1	0	Oxidation (M)	1493.7396	0.73955814	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	0	4	0				2													15.878	15.878	2	6.1764E-07	9678	DP690-4	160.86	93.65			NaN	NaN	NaN	0	0	Median	9017600	0	9017600	11416	1044	10626	22210;22211	53845;53846;53847;53848	53846	1576	4	9606
QDLPDAMKPHEIQEK	2	0	Oxidation (M)	1793.8618	0.86179854	982	P62330	ARF6	ADP-ribosylation factor 6	yes	yes	0	1	1	16	0																1	10.742	10.742	4	6.353E-06	3306	DP690-16	167.73	146.38			0.71883	0.81593	NaN	1	0	Median	24081000	13394000	10686000	11417	982	10627	22212	53849;53850;53851	53850	1500	3	9606
QDLPSLDEKPR	1	1	Unmodified	1296.6674	0.66737948	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	1	3	0			1														13.22	13.22	3	0.00014192	6276	DP690-3	118.23	94.484			0.88544	0.98202	NaN	1	0	Median	57461000	31913000	25548000	11418	1778	10628	22213	53852;53853	53853		2	9606
QDSAAVGFDYKEK	2	0	Unmodified	1456.6834	0.68342347	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	1	11	0											1						12.975	12.975	3	0.052444	6451	DP690-11	49.62	28.588			1.2721	1.4465	NaN	1	0	Median	136070000	66296000	69776000	11419	1267	10629	22214	53854	53854		1	9606
QDSINAYNEPNSTK	1	0	Unmodified	1579.7114	0.71142914	198	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	11	0											1						12.189	12.189	2	0.003335	5250	DP690-11	147.62	106.22			NaN	NaN	NaN	0	0	Median	0	0	0	11420	198	10630	22215	53855	53855		1	9606
QDTFSGTGFFPLDR	0	1	Unmodified	1586.7365	0.73652168	2486	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	3	0			1														20.534	20.534	2	0.0030526	15865	DP690-3	88.101	46.396			1.4916	1.6281	NaN	1	0	Median	2919200	954750	1964400	11421	2486	10631	22216	53856	53856		1	9606
QDTSSSTTHLAQQLK	1	0	Unmodified	1643.8115	0.81147753	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.2	0.748									1	2	2						12.342	12.342	2;3	4.3250000000000003E-20	5693	DP690-10	318.57	270.72			0.91814	1.0785	8.661	5	0	Median	619000000	320990000	298010000	11422	2190	10632	22217;22218;22219;22220;22221	53857;53858;53859;53860;53861;53862;53863;53864;53865;53866;53867;53868;53869;53870;53871	53864		15	9606
QDTSSSTTHLAQQLKQER	1	1	Unmodified	2057.0138	0.013759169	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	10	0										2							12.521	12.521	3	1.8334E-06	5851	DP690-10	128.45	101.61			0.85496	1.0763	NaN	1	0	Median	47000000	26278000	20722000	11423	2190	10633	22222;22223	53872;53873;53874	53872		3	9606
QDTVSEPVTPASLAALQSDVQPVGHDYVEEVRNDEGK	1	1	Unmodified	3978.9083	0.90829763	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	1	11	0											1						19.692	19.692	4	0.039045	16178	DP690-11	46.701	28.766			NaN	NaN	NaN	0	0	Median	27490000	27490000	0	11424	1889	10634	22224	53875	53875		1	9606
QDVDNASLAR	0	1	Unmodified	1087.5258	0.52580062	424	P08670	VIM	Vimentin	yes	yes	0	0	0	12	0												1					11.2	11.2	2	4.1412E-05	3745	DP690-12	218.73	144.76			0.87197	0.93127	NaN	1	0	Median	594700000	321960000	272740000	11425	424	10635	22225	53876;53877;53878;53879;53880;53881	53877		6	9606
QDVIITALDNVEAR	0	1	Unmodified	1555.8206	0.82058566	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														20.601	20.601	2	2.5977E-05	15919	DP690-3	174.42	132.21			0.80499	0.9045	NaN	1	0	Median	33173000	18958000	14214000	11426	5	10636	22226	53882;53883	53882		2	9606
QEAATLAANNTQLQAR	0	1	Unmodified	1698.8649	0.86491009	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										3							13.522	13.522	2	0.0077101	7365	DP690-10	126.32	67.808			NaN	NaN	NaN	0	0	Median	0	0	0	11427	1301	10637	22227;22228;22229	53884;53885;53886	53886		3	9606
QEAEDLSLSAPSSPEISPQSSPR	0	1	Unmodified	2411.1452	0.14522685	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		2															16.865	16.865	2	0.00024625	9958	DP690-2	116.96	116.96			0.47053	0.48153	NaN	1	0	Median	2008800	1445000	563850	11428	2418	10638	22230;22231	53887;53888;53889	53887		3	9606
QEAENQQLADAVLAGR	0	1	Unmodified	1711.8489	0.84892567	1485	Q6P1K2	PMF1	Polyamine-modulated factor 1	yes	yes	0	0	0	15	0															1		17.551	17.551	2	0.0036382	12260	DP690-15	117.95	65.256			NaN	NaN	NaN	0	0	Median	5946300	0	5946300	11429	1485	10639	22232	53890	53890		1	9606
QEAGISEGQGTAGEEEEK	1	0	Unmodified	1847.8021	0.80209464	181	O43583	DENR	Density-regulated protein	yes	yes	0	0	0	15	0															1		11.454	11.454	2	7.2623E-98	4083	DP690-15	397.23	234.57			0.9579	1.1293	NaN	1	0	Median	11283000	5839200	5444200	11430	181	10640	22233	53891;53892;53893;53894;53895;53896	53896		6	9606
QEAGISEGQGTAGEEEEKK	2	0	Unmodified	1975.8971	0.89705766	181	O43583	DENR	Density-regulated protein	yes	yes	0	0	1	15	0															1		10.467	10.467	3	4.1527E-06	2867	DP690-15	126.42	103.46			0.79251	0.90684	NaN	1	0	Median	11841000	6112000	5728800	11431	181	10641	22234	53897;53898	53897		2	9606
QEAGISEGQGTAGEEEEKKK	3	0	Unmodified	2103.992	0.99202067	181	O43583	DENR	Density-regulated protein	yes	yes	0	0	2	12.3	3.77							1								2		10.245	10.245	3;4	1.0090999999999999E-32	2578	DP690-15	262.74	180.62			1.0143	1.1049	6.0649	3	0	Median	324480000	164320000	160160000	11432	181	10642	22235;22236;22237	53899;53900;53901;53902;53903;53904;53905	53901		7	9606
QEATFCSQR	0	1	Unmodified	1125.4873	0.48730662	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10	0										1							10.753	10.753	2	0.039463	3325	DP690-10	104.06	72.186			NaN	NaN	NaN	0	0	Median	0	0	0	11433	2190	10643	22238	53906	53906		1	9606
QEDGSLCLVQFPSR	0	1	Unmodified	1634.7723	0.77225526	431	P09132	SRP19	Signal recognition particle 19 kDa protein	yes	yes	0	0	0	16	0																1	18.596	18.596	2	8.6836E-48	13039	DP690-16	262.07	206.35			NaN	NaN	NaN	0	0	Median	11827000	0	11827000	11434	431	10644	22239	53907;53908	53908		2	9606
QEDGSLCLVQFPSRK	1	1	Unmodified	1762.8672	0.86721827	431	P09132	SRP19	Signal recognition particle 19 kDa protein	yes	yes	0	0	1	16	0																1	16.288	16.288	3	0.00047836	10252	DP690-16	95.195	64.198			0.81105	0.89259	NaN	1	0	Median	34231000	19319000	14912000	11435	431	10645	22240	53909	53909		1	9606
QEDKDDLDVTELTNEDLLDQLVK	2	0	Unmodified	2687.3025	0.30251535	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	1	12	0.816											1	1	1				22.149	22.149	3	7.7194E-16	19482	DP690-11	174.91	152.88			0.80323	0.95278	13.672	3	0	Median	57355000	32469000	24885000	11436	723	10646	22241;22242;22243	53910;53911;53912;53913;53914;53915;53916	53911		7	9606
QEEAEDPACIPIFWVSK	1	0	Unmodified	2017.9455	0.94552817	871	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	12	0												1					21.889	21.889	2	0.058077	18233	DP690-12	54.094	54.094			0.62327	0.75471	NaN	1	0	Median	3333800	1639100	1694800	11437	871	10647	22244	53917	53917		1	9606
QEEEMMAKEEELVK	2	0	2 Oxidation (M)	1753.775	0.77501695	668	P35579	MYH9	Myosin-9	yes	yes	0	2	1	2	0		1															11.583	11.583	3	0.025471	3647	DP690-2	52.891	40.059			1.1579	1.2021	NaN	1	0	Median	20618000	9592400	11026000	11438	668	10648	22245	53918;53919;53920;53921	53920	961;962	4	9606
QEEFESIEEALPDTDVLYMTR	0	1	Oxidation (M)	2530.1421	0.14211531	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	0	2	0		1															21.914	21.914	2	0.00209	15660	DP690-2	86.497	70.274			1.1714	1.1964	NaN	1	0	Median	904110	396170	507940	11439	602	10649	22246	53922;53923	53923	818	2	9606
QEELQQLEQQR	0	1	Unmodified	1427.7005	0.70047052	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							14.613	14.613	2	1.3526E-05	7873	DP690-9	192.26	149.91			0.7443	0.93129	NaN	1	0	Median	9041200	5115900	3925300	11440	1319	10650	22247;22248	53924;53925;53926	53925		3	9606
QEELYSELQAR	0	1	Unmodified	1364.6572	0.65720872	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								16.018	16.018	2	0.0039779	9885	DP690-9	125.71	70.991			NaN	NaN	NaN	0	0	Median	10316000	10316000	0	11441	1319	10651	22249	53927	53927		1	9606
QEEQMRKQEEQMGK	2	1	2 Oxidation (M)	1809.7985	0.79854636	4	A0A1B0GV03			yes	yes	0	2	2	4	0				1													18.588	18.588	2	0.010559	13082	DP690-4	61.344	61.344			1.0226	1.1095	NaN	1	0	Median	5295600	1969100	3326600	11442	4	10652	22250	53928;53929	53929	3;4	2	9606
QEESSLPPDNENK	1	0	Unmodified	1485.6583	0.65833093	1160	Q12800	TFCP2	Alpha-globin transcription factor CP2	yes	yes	0	0	0	12	0												1					10.605	10.605	2	0.00011703	2983	DP690-12	139.86	115.87			0.67269	0.80876	NaN	1	0	Median	18752000	11613000	7139000	11443	1160	10653	22251	53930;53931	53930		2	9606
QEIFQEQLAAVPEFR	0	1	Unmodified	1803.9155	0.91554867	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	7	4			1								1						20.339	20.339	2	4.6968E-109	15487	DP690-3	317.81	221.67			1.1225	1.3485	NaN	1	0	Median	54825000	12482000	42343000	11444	2515	10654	22252;22253	53932;53933;53934;53935;53936;53937	53936		6	9606
QEIVSLFNAFGR	0	1	Unmodified	1379.7197	0.7197494	1870	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	4	0				2													21.496	21.496	2	4.671E-11	16396	DP690-4	216.12	116.98			NaN	NaN	NaN	0	0	Median	0	0	0	11445	1870	10655	22254;22255	53938;53939	53939		2	9606
QEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPNCYYDK	3	0	Unmodified	4169.7516	0.75159857	1683	Q8ND56	LSM14A	Protein LSM14 homolog A	yes	yes	0	0	2	12	0												1					14.466	14.466	4	7.379E-06	8360	DP690-12	60.971	60.971			0.646	0.6997	NaN	1	0	Median	22371000	13970000	8400600	11446	1683	10656	22256	53940;53941	53941		2	9606
QELEAELAK	1	0	Unmodified	1029.5342	0.53424004	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								13.728	13.728	2	0.039271	6802	DP690-9	104.44	51.8			NaN	NaN	NaN	0	0	Median	0	0	0	11447	1319	10657	22257	53942	53942		1	9606
QELGICPAVK	1	0	Unmodified	1113.5852	0.58522975	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															14.285	14.285	2	9.4731E-05	6833	DP690-2	147.29	72.245			1.2692	1.2834	NaN	1	0	Median	21550000	9017800	12532000	11448	602	10658	22258	53943;53944;53945;53946	53946		4	9606
QELILSNSEDK	1	0	Unmodified	1274.6354	0.63541065	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														14.027	14.027	2	1.2056E-06	7310	DP690-3	228.84	181.18			1.9728	2.0806	NaN	1	0	Median	40182000	13789000	26393000	11449	878	10659	22259	53947;53948	53948		2	9606
QELSHALYQHDAACR	0	1	Unmodified	1797.8217	0.82166506	2403	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	12.5	0.5												1	1				11.559	11.559	4	3.1653E-06	4287	DP690-12	128.35	121.4			0.78877	0.93275	18.207	2	0	Median	185290000	97860000	87429000	11450	2403	10660	22260;22261	53949;53950;53951;53952;53953;53954;53955;53956;53957	53953		9	9606
QELSQQQPQAGHCR	0	1	Unmodified	1665.7642	0.76415019	2156	Q9HAU4	SMURF2	E3 ubiquitin-protein ligase SMURF2	yes	yes	0	0	0	7	4			1								1						10.298	10.298	3	0.0018663	2493	DP690-11	80.318	55.141			0.88553	1.0235	NaN	1	0	Median	180310000	77352000	102950000	11451	2156	10661	22262;22263	53958;53959	53958		2	9606
QEPDNTGVLLLLSSIHFQCR	0	1	Unmodified	2326.174	0.17396498	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	11	0											1						22.761	22.761	3	0.018746	20392	DP690-11	51.566	22.916			0.58182	0.72236	NaN	1	0	Median	7760500	4341500	3419000	11452	149	10662	22264	53960	53960		1	9606
QEPGSNEEIKEFAAGYNVK	2	0	Unmodified	2109.0015	0.0014631481	686	P36969	GPX4	Phospholipid hydroperoxide glutathione peroxidase, mitochondrial	yes	yes	0	0	1	16	0																1	16.261	16.261	3	0.0052422	10147	DP690-16	63.374	41.435			0.71453	0.81543	NaN	1	0	Median	16039000	7251600	8787100	11453	686	10663	22265	53961	53961		1	9606
QEPLEEDSPSSSSAGLDK	1	0	Unmodified	1874.8381	0.83814579	500	P15408	FOSL2	Fos-related antigen 2	yes	yes	0	0	0	14	0														1			13.978	13.978	2	9.5995E-11	7481	DP690-14	217.12	162.78			NaN	NaN	NaN	0	0	Median	0	0	0	11454	500	10664	22266	53962	53962		1	9606
QEPLLIGSTK	1	0	Unmodified	1084.6128	0.61282471	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														14.893	14.893	2	9.2622E-05	7585	DP690-2	150.81	82.023			0.86154	0.89544	4.8986	2	0	Median	151930000	82434000	69498000	11455	789	10665	22267;22268	53963;53964;53965;53966;53967;53968;53969	53966		7	9606
QEPQEINFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESR	1	1	Unmodified	4418.0357	0.035699763	588	P25942	CD40	Tumor necrosis factor receptor superfamily member 5	yes	yes	0	0	1	13.5	0.5													1	1			17.688	17.688	4	7.781E-11	12513	DP690-13	76.678	71.965			NaN	NaN	NaN	0	0	Median	37683000	31165000	6517900	11456	588	10666	22269;22270	53970;53971;53972	53970		3	9606
QEQALLEEIER	0	1	Unmodified	1356.6885	0.68850885	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								17.773	17.773	2	4.6401E-05	12109	DP690-9	180.09	144.94			0.74821	0.9334	NaN	1	0	Median	17366000	9453200	7912700	11457	1319	10667	22271	53973;53974	53973		2	9606
QEQIQAMPLADSQAVR	0	1	Oxidation (M)	1799.8836	0.88359662	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	9.5	0.5									1	1							14.318	14.318	2	3.4107E-07	8515	DP690-10	171.62	142.07			0.64711	0.80788	14.425	2	0	Median	78442000	48868000	29575000	11458	1319	10668	22272;22273	53975;53976;53977;53978;53979;53980;53981;53982;53983;53984	53976	2031	10	9606
QEQIQAMPLADSQAVR	0	1	Unmodified	1783.8887	0.888682	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							16.153	16.153	2	1.7958E-26	11253	DP690-10	225.33	153.24			0.61604	0.7722	NaN	1	0	Median	37476000	34087000	3388400	11459	1319	10668	22274;22275	53985;53986;53987;53988;53989;53990;53991	53986		7	9606
QESIMDAGPVVVHCSAGIGR	0	1	Oxidation (M)	2097.9936	0.99355777	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	1	0	4	0				1													14.829	14.829	3	3.9458E-07	8305	DP690-4	140.16	126			0.66994	0.76808	NaN	1	0	Median	20748000	12042000	8706300	11460	1120	10669	22276	53992;53993;53994;53995;53996	53996	1738	5	9606
QETELSPEMISSGSWR	0	1	Oxidation (M)	1851.8309	0.83089235	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	0	10.4	3.2				1								4					17.539	17.539	2	2.2287E-43	12059	DP690-12	237.53	176.11			0.99829	1.1734	22.367	3	0	Plateau	205020000	98901000	106110000	11461	2434	10670	22277;22278;22279;22280;22281	53997;53998;53999;54000;54001;54002;54003;54004;54005;54006;54007	54003	2874	10	9606
QETELSPEMISSGSWR	0	1	Unmodified	1835.836	0.83597772	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	8	4				1								1					18.646	18.646	2	1.0006000000000002E-71	14045	DP690-12	378.42	304.52			0.85664	0.97509	NaN	1	0	Median	167800000	93325000	74479000	11462	2434	10670	22282;22283	54008;54009;54010;54011;54012;54013	54012		6	9606
QETQLLEDYVEAIEGVR	0	1	Unmodified	1990.9848	0.98475045	2373	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	11	0											1						23.621	23.621	2	1.1815E-17	21242	DP690-11	216.68	216.68			0.54293	0.66604	NaN	1	0	Median	5619500	3724600	1894900	11463	2373	10671	22284	54014;54015;54016	54015		3	9606
QEVPIIIVFR	0	1	Unmodified	1212.723	0.72304386	630	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	7	4			1								1						20.813	20.813	2	0.00061036	16078	DP690-3	115.49	92.914			2.9327	3.2621	NaN	1	0	Median	9975500	5479900	4495600	11464	630	10672	22285;22286	54017;54018;54019	54018		3	9606
QEVPMYTDSEPR	0	1	Oxidation (M)	1466.6348	0.63475872	1842	Q96EK7	FAM120B	Constitutive coactivator of peroxisome proliferator-activated receptor gamma	yes	no	0	1	0	3	0			1														13.083	13.083	2	0.048097	6076	DP690-3	86.344	39.453			NaN	NaN	NaN	0	0	Median	0	0	0	11465	1842	10673	22287	54020	54020		1	9606
QEVPSWLENMAYEHHYK	1	0	Unmodified	2159.9735	0.97347426	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	11.5	0.5											1	1					17.601	17.601	4	1.481E-06	13164	DP690-11	127.66	107.11			0.89123	1.0505	7.1952	2	0	Median	193170000	101160000	92018000	11466	96	10674	22288;22289	54021;54022;54023;54024;54025;54026	54022		5	9606
QEVPSWLENMAYEHHYK	1	0	Oxidation (M)	2175.9684	0.96838888	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	1	0	12	0												1					15.761	15.761	4	0.0081802	10046	DP690-12	57.525	42.645			0.88391	1.0414	NaN	1	0	Median	86208000	44968000	41239000	11467	96	10674	22290	54027;54028	54028	110	2	9606
QEVPTCTGPESR	0	1	Unmodified	1359.6089	0.60887832	1842	Q96EK7	FAM120B	Constitutive coactivator of peroxisome proliferator-activated receptor gamma	yes	yes	0	0	0	11	0											1						11.214	11.214	2	0.0014171	3906	DP690-11	136.96	90.497			NaN	NaN	NaN	0	0	Median	9238400	9238400	0	11468	1842	10675	22291	54029;54030	54029		2	9606
QEVVELLLAR	0	1	Unmodified	1168.6816	0.68157298	242	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	2	0		1															19.943	19.943	2	0.0025519	13430	DP690-2	98.582	73.008			1.617	1.6536	NaN	1	0	Median	1319600	453050	866530	11469	242	10676	22292	54031;54032	54031		2	9606
QEYDESGPSIVHR	0	1	Unmodified	1515.6954	0.69538514	926;1023	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39;P63261	ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	10.2	4.17	1	1	1		1	3		3	2	1	3	2	3	4	2	2	12.579	12.579	2;3	1.1904E-39	5377	DP690-14	270.36	174.33			0.78926	0.87793	16.945	23	0	Median	48260000000	26520000000	21740000000	11470	926;1023	10677	22293;22294;22295;22296;22297;22298;22299;22300;22301;22302;22303;22304;22305;22306;22307;22308;22309;22310;22311;22312;22313;22314;22315;22316;22317;22318;22319;22320;22321	54033;54034;54035;54036;54037;54038;54039;54040;54041;54042;54043;54044;54045;54046;54047;54048;54049;54050;54051;54052;54053;54054;54055;54056;54057;54058;54059;54060;54061;54062;54063;54064;54065;54066;54067;54068;54069;54070;54071;54072;54073;54074;54075;54076;54077;54078;54079;54080;54081;54082;54083;54084;54085;54086;54087;54088;54089;54090;54091;54092;54093;54094;54095;54096;54097;54098;54099;54100;54101;54102;54103;54104;54105;54106;54107;54108;54109;54110;54111;54112;54113;54114;54115;54116;54117;54118;54119;54120;54121;54122;54123;54124;54125;54126	54073		94	9606
QEYDESGPSIVHRK	1	1	Unmodified	1643.7903	0.79034816	926;1023	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39;P63261	ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	11.3	3.77						1								2			10.665	10.665	3;4	6.903E-16	2929	DP690-14	231.74	212.78			0.82807	0.84683	31.945	3	0	Plateau	891560000	532480000	359080000	11471	926;1023	10678	22322;22323;22324	54127;54128;54129;54130;54131;54132;54133;54134;54135;54136;54137	54129		11	9606
QEYEQLIAK	1	0	Unmodified	1120.5764	0.57643921	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	4.8	3.19	1	1		1				1	1								14.545	14.545	2	1.4242E-10	6179	DP690-1	188.98	97.909		+	NaN	NaN	NaN	0	0	Median	138070000	138070000	0	11472	667	10679	22325;22326;22327;22328;22329	54138;54139;54140;54141;54142;54143;54144;54145;54146	54139		9	9606
QEYLDTLYR	0	1	Unmodified	1199.5823	0.58225287	920	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	13	0													1				16.893	16.893	2	0.00067873	11369	DP690-13	141.52	117.49			0.99385	1.2067	NaN	1	0	Median	52801000	24789000	28012000	11473	920	10680	22330	54147;54148;54149	54148		3	9606
QFAEMYVAK	1	0	Oxidation (M)	1101.5165	0.51648149	483	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	3	0			1														13.427	13.427	2	0.056255	6490	DP690-3	72.485	37.047			1.1874	1.2295	NaN	1	0	Median	81789000	39223000	42566000	11474	483	10681	22331	54150;54151	54151		2	9606
QFAEMYVAK	1	0	Unmodified	1085.5216	0.52156686	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	3	0			1														15.104	15.104	2	0.015014	8767	DP690-3	84.498	21.781			1.1915	1.2663	NaN	1	0	Median	29875000	14703000	15172000	11475	483	10681	22332	54152;54153	54153		2	9606
QFEDEKANWEAQQR	1	1	Unmodified	1777.802	0.80197548	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	1	13	0													1				13.161	13.161	3	0.00089439	6141	DP690-13	90.759	65.028			0.94362	1.0827	NaN	1	0	Median	79636000	36135000	43501000	11476	1351	10682	22333	54154;54155;54156;54157	54156		4	9606
QFEDELHPDLK	1	0	Unmodified	1369.6514	0.65139506	2464	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	0	0	16	0																1	14.893	14.893	3	0.048308	8410	DP690-16	49.632	16.09			0.94392	1.0507	NaN	1	0	Median	72083000	36899000	35184000	11477	2464	10683	22334	54158	54158		1	9606
QFGAQANVIGPWIQTK	1	0	Unmodified	1756.9261	0.92605378	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	11	0											1						19.063	19.063	2	0.0037647	15886	DP690-11	117.27	82.495			NaN	NaN	NaN	0	0	Median	35566000	0	35566000	11478	476	10684	22335	54159;54160	54160		2	9606
QFGGMLLAYSGVQSK	1	0	Oxidation (M)	1600.7919	0.79192806	1968	Q9BPX6	MICU1	Calcium uptake protein 1, mitochondrial	yes	yes	0	1	0	13	0													2				18.014	18.014	2	0.019582	12793	DP690-13	103.46	57.554			NaN	NaN	NaN	0	0	Median	0	0	0	11479	1968	10685	22336;22337	54161;54162	54161	2515	2	9606
QFIAAQGSSR	0	1	Unmodified	1063.5411	0.54105675	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	6	4		1								1							11.343	11.343	2	0.00089052	4207	DP690-10	109.48	109.48			1.2697	1.5699	NaN	1	0	Median	120140000	53644000	66493000	11480	408	10686	22338;22339	54163;54164;54165;54166;54167;54168	54167		6	9606
QFINLMLPMK	1	0	2 Oxidation (M)	1265.6512	0.65120083	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	9	0									2								19.06	19.06	2	0.0029947	12874	DP690-9	101.6	71.525			0.90157	1.0914	28.811	2	0	Median	53888000	30403000	23486000	11481	1046	10687	22340;22341	54169;54170;54171;54172;54173	54170	1631;1632	5	9606
QFINLMLPMK	1	0	Oxidation (M)	1249.6563	0.65628621	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									2								19.685	19.685	2	0.041544	14596	DP690-9	72.547	54.683			0.91317	1.1696	19.751	2	0	Median	28535000	14345000	14190000	11482	1046	10687	22342;22343	54174;54175;54176	54176	1631;1632	3	9606
QFLECAQNQGDIK	1	0	Unmodified	1549.7195	0.7194914	1431	Q9Y6H1;Q5T1J5	CHCHD2;CHCHD2P9	Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial	yes	no	0	0	0	16	0																1	14.428	14.428	2	0.0035504	7847	DP690-16	126.03	50.373			NaN	NaN	NaN	0	0	Median	3056500	3056500	0	11483	1431	10688	22344	54177;54178	54177		2	9606
QFLFDSILK	1	0	Unmodified	1109.6121	0.61209643	1915	Q96QE5	TEFM	Transcription elongation factor, mitochondrial	yes	yes	0	0	0	14	0														1			21.389	21.389	2	0.019994	17366	DP690-14	79.474	30.718			0.95504	1.1252	NaN	1	0	Median	6636300	3728000	2908300	11484	1915	10689	22345	54179	54179		1	9606
QFLILNDFPSVNEAIDQR	0	1	Unmodified	2118.0746	0.074568512	1336	Q15528	MED22	Mediator of RNA polymerase II transcription subunit 22	yes	yes	0	0	0	16	0																1	22.544	22.544	2	6.3857E-10	17513	DP690-16	188.48	158.84			0.73867	0.86453	NaN	1	0	Median	2403100	1338200	1064800	11485	1336	10690	22346	54180;54181;54182;54183;54184	54183		5	9606
QFQNVQQVEYSSIR	0	1	Unmodified	1724.8482	0.84819739	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								15.922	15.922	2	0.00024327	9764	DP690-9	115	86.677			0.97112	1.2145	NaN	1	0	Median	4335900	1814100	2521800	11486	1453	10691	22347	54185	54185		1	9606
QFSSASSQQGQEEKEEDLK	2	0	Unmodified	2153.9713	0.97128523	2196	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	1	13	0													1				11.442	11.442	3	0.00018897	3987	DP690-13	101.3	79.994			1.0762	1.236	NaN	1	0	Median	10212000	4859700	5352800	11487	2196	10692	22348	54186;54187;54188	54186		3	9606
QFSSSYLSR	0	1	Unmodified	1073.5142	0.5141733	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	5.75	3.42	1			1					2								14.218	14.218	2	4.4839E-06	7498	DP690-4	160.63	84.892		+	NaN	NaN	NaN	0	0	Median	39285000	39285000	0	11488	667	10693	22349;22350;22351;22352	54189;54190;54191;54192;54193;54194	54191		6	9606
QFVFDLHSGK	1	0	Unmodified	1176.5928	0.59275797	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	8.71	3.73					2	2							3				15.785	15.785	2;3	0.00032295	9030	DP690-6	92.538	59.276			0.94501	1.0036	8.5653	4	0	Median	195950000	96148000	99803000	11489	1989	10694	22353;22354;22355;22356;22357;22358;22359	54195;54196;54197;54198;54199;54200;54201;54202;54203;54204;54205;54206;54207;54208;54209;54210;54211;54212;54213	54208		19	9606
QFVTPADVVSGNPK	1	0	Unmodified	1457.7514	0.75144346	484	P13797;Q14651	PLS3;PLS1	Plastin-3;Plastin-1	yes	no	0	0	0	4	0				1													16.476	16.476	2	0.014125	10528	DP690-4	77.593	51.655			0.75618	0.82121	NaN	1	0	Median	9504800	5327500	4177200	11490	484	10695	22360	54214	54214		1	9606
QFVVFEGNHYFYSPYPTK	1	0	Unmodified	2222.0473	0.047291129	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												1					18.815	18.815	3	0.0032961	14376	DP690-12	69.111	44.318			0.64578	0.77603	NaN	1	0	Median	26801000	18099000	8701600	11491	375	10696	22361	54215;54216	54215		2	9606
QGAFLVNAAR	0	1	Unmodified	1045.5669	0.56687757	908	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	13	0													1				14.523	14.523	2	0.0001002	8105	DP690-13	143.89	113.17			0.83438	0.95386	NaN	1	0	Median	227420000	116140000	111280000	11492	908	10697	22362	54217;54218	54218		2	9606
QGAGDSLIAGSAMSK	1	0	Oxidation (M)	1407.6664	0.6663932	448	Q8NHU0;Q5HYN5;Q5DJT8;P0DMV2;P0DMV1;P0DMV0;P0DMU9;P0DMU8;P0DMU7	CT45A3;CT45A1;CT45A2;CT45A9;CT45A8;CT45A7;CT45A10;CT45A5;CT45A6	Cancer/testis antigen family 45 member A3;Cancer/testis antigen family 45 member A1;Cancer/testis antigen family 45 member A2;Cancer/testis antigen family 45 member A9;Cancer/testis antigen family 45 member A8;Cancer/testis antigen family 45 member A7;Cancer/testis antigen family 45 member A10;Cancer/testis antigen family 45 member A5;Cancer/testis antigen family 45 member A6	yes	no	0	1	0	15	0															1		12.973	12.973	2	0.030796	5997	DP690-15	67.997	44.474			0.72064	0.84962	NaN	1	0	Median	10969000	5606700	5362600	11493	448	10698	22363	54219	54219	511	1	9606
QGAIVAVTGDGVNDSPALK	1	0	Unmodified	1810.9425	0.94249171	379	P05023;P13637;P50993	ATP1A1;ATP1A3;ATP1A2	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2	yes	no	0	0	0	11	0											1						16.425	16.425	2	0.0050757	11468	DP690-11	126.09	73.073			NaN	NaN	NaN	0	0	Median	0	0	0	11494	379	10699	22364	54220	54220		1	9606
QGANINEIR	0	1	Unmodified	1013.5254	0.52540669	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	12.4	3.2						1								4			11.886	11.886	2	0.00029413	4576	DP690-14	153.04	108.64			0.84742	0.89856	NaN	1	0	Median	427020000	366330000	60685000	11495	1325	10700	22365;22366;22367;22368;22369	54221;54222;54223;54224;54225;54226;54227;54228;54229;54230	54221		10	9606
QGDTGDWIGTFLGHK	1	0	Unmodified	1630.774	0.77396981	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	14	0														1			20.155	20.155	3	0.00020704	15750	DP690-14	86.539	64.464			1.0627	1.2909	NaN	1	0	Median	58773000	29759000	29014000	11496	2474	10701	22370	54231;54232	54231		2	9606
QGEEEDAEIIVK	1	0	Unmodified	1358.6565	0.65654002	2348	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	12	0												1					14.825	14.825	2	0.0011851	8739	DP690-12	136.02	70.557			NaN	NaN	NaN	0	0	Median	0	0	0	11497	2348	10702	22371	54233	54233		1	9606
QGEVIVSIEEKPK	2	0	Unmodified	1454.7981	0.7980593	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	1	3	0			1														13.568	13.568	3	0.012155	6824	DP690-3	66.393	40.034			0.52729	0.57248	NaN	1	0	Median	13581000	8612900	4967800	11498	788	10703	22372	54234	54234		1	9606
QGFDFLCMPVFHPR	0	1	Oxidation (M)	1765.8069	0.80686662	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	1	0	4	0				1													19.27	19.27	3	0.0043993	13900	DP690-4	73.881	48.564			2.5578	2.9816	NaN	1	0	Median	13325000	4412100	8912800	11499	111	10704	22373	54235;54236	54235	123	2	9606
QGFGNLPICMAK	1	0	Unmodified	1334.6475	0.64751243	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	11	0											1						18.243	18.243	2	0.0049693	14047	DP690-11	85.731	50.078			0.75802	0.88304	NaN	1	0	Median	140690000	68829000	71866000	11500	470	10705	22374	54237;54238	54237		2	9606
QGGASQSDKTPEELFHPLGADSQV	1	0	Unmodified	2497.1721	0.1721103	464	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	yes	yes	0	0	1	10	0										1							17.621	17.621	2	0.00028742	13295	DP690-10	140.49	110.57			NaN	NaN	NaN	0	0	Median	0	0	0	11501	464	10706	22375	54239	54239		1	9606
QGGDVLQNEEGETTSHLMGMFYR	0	1	2 Oxidation (M)	2630.1377	0.13771541	700	P39748	FEN1	Flap endonuclease 1	yes	yes	0	2	0	13	0													1				17.047	17.047	3	0.00024167	11594	DP690-13	99.881	86.312			0.89489	1.0829	NaN	1	0	Median	64345000	34336000	30009000	11502	700	10707	22376	54240;54241;54242;54243	54242	1023;1024	4	9606
QGGGGGGGSVPGIER	0	1	Unmodified	1283.6218	0.62182627	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11	0											2						12.175	12.175	2	0.00031441	5106	DP690-11	111.79	90.923			0.82323	0.95736	NaN	1	0	Median	166530000	95175000	71350000	11503	849	10708	22377;22378	54244;54245;54246;54247;54248	54244		5	9606
QGGLGPMNIPLVSDPK	1	0	Oxidation (M)	1637.8447	0.84469192	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	1	0	11.3	4.03							2	1							2	1	18.234	18.234	2	3.3223E-06	11554	DP690-16	141.37	141.37			0.7029	0.78352	5.9354	6	0	Median	881490000	525660000	355830000	11504	1128	10709	22379;22380;22381;22382;22383;22384	54249;54250;54251;54252;54253;54254;54255;54256;54257;54258;54259;54260;54261;54262;54263;54264	54255	1752	16	9606
QGGLGPMNIPLVSDPK	1	0	Unmodified	1621.8498	0.84977729	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	11	4							1								1		19.449	19.449	2	5.9111E-09	13767	DP690-7	187.62	187.62			0.75053	0.83898	9.398	2	0	Median	158470000	89748000	68723000	11505	1128	10709	22385;22386	54265;54266;54267;54268;54269;54270;54271;54272	54269		8	9606
QGGLGPMNIPLVSDPKR	1	1	Oxidation (M)	1793.9458	0.94580295	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	1	1	12.2	3.87							1	1							2	1	15.729	15.729	2;3	7.6551E-07	9633	DP690-15	136.39	106.26			0.71676	0.74731	8.2137	3	0	Plateau	847010000	444200000	402800000	11506	1128	10710	22387;22388;22389;22390;22391	54273;54274;54275;54276;54277;54278;54279;54280;54281;54282;54283;54284;54285;54286	54276	1752	14	9606
QGGLGPMNIPLVSDPKR	1	1	Unmodified	1777.9509	0.95088832	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	7	0							1										17.562	17.562	3	1.4495E-05	11568	DP690-7	122.12	66.929			0.72243	0.76142	NaN	1	0	Median	105690000	61055000	44639000	11507	1128	10710	22392	54287;54288;54289;54290;54291;54292	54292		6	9606
QGGLNLSPLK	1	0	Unmodified	1025.5869	0.58694431	1975	Q9BQ75	CMSS1	Protein CMSS1	yes	yes	0	0	0	14	0														1			15.867	15.867	2	0.013227	10032	DP690-14	79.148	43.792			0.76345	0.92628	NaN	1	0	Median	64205000	35895000	28310000	11508	1975	10711	22393	54293;54294	54293		2	9606
QGGSQPSSFSPGQSQVTPQDQEK	1	0	Unmodified	2403.0939	0.093859983	2089	Q9H0L4	CSTF2T	Cleavage stimulation factor subunit 2 tau variant	yes	yes	0	0	0	12	0												2					13.286	13.286	2	1.2533E-54	6578	DP690-12	301.75	279.39			0.60756	0.73745	NaN	1	0	Median	10796000	5750600	5045800	11509	2089	10712	22394;22395	54295;54296;54297;54298	54297		4	9606
QGIETPEDQNDLR	0	1	Unmodified	1513.7009	0.70086445	1341	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	12	0												2					13.78	13.78	2	0.037955	7280	DP690-12	91.701	51.085			NaN	NaN	NaN	0	0	Median	0	0	0	11510	1341	10713	22396;22397	54299;54300	54300		2	9606
QGIETPEDQNDLRK	1	1	Unmodified	1641.7958	0.79582747	1341	Q15637	SF1	Splicing factor 1	yes	yes	0	0	1	12	0												1					11.987	11.987	3	0.00063982	4826	DP690-12	96.866	77.027			0.82626	0.99468	NaN	1	0	Median	71409000	34549000	36860000	11511	1341	10714	22398	54301;54302;54303	54301		3	9606
QGIVPPGLTENELWR	0	1	Unmodified	1707.8944	0.8944193	2145	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	14	0														1			20.273	20.273	2	0.0031097	15948	DP690-14	139.32	91.232			NaN	NaN	NaN	0	0	Median	0	0	0	11512	2145	10715	22399	54304	54304		1	9606
QGLLHVGDIIK	1	0	Unmodified	1191.6976	0.69755739	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	12	0												1					16.638	16.638	3	0.03743	11314	DP690-12	53.08	53.08			4.2412	5.0985	NaN	1	0	Median	20739000	7483900	13255000	11513	2280	10716	22400	54305	54305		1	9606
QGLNGVPILSEEELSLLDEFYK	1	0	Unmodified	2492.2686	0.26863645	1275	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	11	0											1						25.283	25.283	2	0.0040502	23247	DP690-11	100.45	69.971			NaN	NaN	NaN	0	0	Median	1700200	0	1700200	11514	1275	10717	22401	54306	54306		1	9606
QGLQSQIAQVLEGR	0	1	Unmodified	1525.8213	0.82125436	781	P48681	NES	Nestin	yes	yes	0	0	0	13	0													1				20.625	20.625	2	0.02242	16214	DP690-13	98.105	61.787			NaN	NaN	NaN	0	0	Median	0	0	0	11515	781	10718	22402	54307	54307		1	9606
QGLYELSASNFELHVAQGDHFIK	1	0	Unmodified	2602.2816	0.28160117	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	5	0					1												19.05	19.05	4	9.9731E-05	13178	DP690-5	111.57	100.14			1.7222	1.7164	NaN	1	0	Median	65854000	25627000	40227000	11516	1675	10719	22403	54308;54309;54310;54311;54312;54313	54311		6	9606
QGNLFDFLR	0	1	Unmodified	1108.5665	0.56654322	2135	Q9H857	NT5DC2	5'-nucleotidase domain-containing protein 2	yes	yes	0	0	0	9.33	3.77				1								2					21.644	21.644	2	0.00058724	16557	DP690-4	146.81	81.505			0.90366	1.0475	NaN	1	0	Median	5479400	2830400	2648900	11517	2135	10720	22404;22405;22406	54314;54315;54316;54317;54318;54319	54316		6	9606
QGNLSSQVPLK	1	0	Unmodified	1169.6404	0.64043645	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								13.452	13.452	2	0.021113	6433	DP690-9	72.243	23.146			0.65651	0.78952	NaN	1	0	Median	38492000	22353000	16139000	11518	1046	10721	22407	54320;54321	54321		2	9606
QGNLSSQVPLKR	1	1	Unmodified	1325.7415	0.74154747	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.5	0.5									2	2							11.82	11.82	2;3	1.1731E-05	4845	DP690-10	117.25	62.6			0.74356	0.85826	1.5214	3	0	Plateau	488020000	277060000	210970000	11519	1046	10722	22408;22409;22410;22411	54322;54323;54324;54325;54326;54327;54328;54329;54330;54331	54322		10	9606
QGNMTAALQAALK	1	0	Oxidation (M)	1331.6867	0.68673471	159	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	yes	yes	0	1	0	16	0																1	14.798	14.798	2	9.1165E-05	8299	DP690-16	131.52	98.288			0.90528	1.0321	NaN	1	0	Median	41017000	21485000	19533000	11520	159	10723	22412	54332;54333;54334;54335	54333	180	4	9606
QGPVSQSATQQPVTADK	1	0	Unmodified	1740.8642	0.86424139	1996	Q9BTA9	WAC	WW domain-containing adapter protein with coiled-coil	yes	yes	0	0	0	12	0												1					11.297	11.297	2	0.0002581	3913	DP690-12	112.08	47.981			0.68253	0.82847	NaN	1	0	Median	10327000	5344900	4981900	11521	1996	10724	22413	54336;54337;54338;54339	54338		4	9606
QGQETAVAPSLVAPALNKPK	2	0	Unmodified	2018.116	0.1160394	1345	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	1	15	0															1		15.157	15.157	3	0.00053663	8973	DP690-15	108.47	74.698			NaN	NaN	NaN	0	0	Median	14481000	0	14481000	11522	1345	10725	22414	54340;54341	54341		2	9606
QGQYSPMAIEEQVAVIYAGVR	0	1	Oxidation (M)	2324.1471	0.14708153	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	12.5	0.5												1	1				22.523	22.523	2	4.794299999999999E-19	18415	DP690-13	190.57	169.22			0.80457	0.98246	4.4909	2	0	Median	12875000	6662200	6212500	11523	585	10726	22415;22416	54342;54343;54344;54345;54346;54347;54348;54349;54350;54351;54352;54353	54353	774	12	9606
QGRPVVICDKEDTETIK	2	1	Unmodified	1987.0044	0.004440036	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	2	4	0				1													11.742	11.742	4	0.00081428	4339	DP690-4	96.208	72.216			0.83672	0.90783	NaN	1	0	Median	18520000	11096000	7424200	11524	1122	10727	22417	54354;54355	54355		2	9606
QGSDAYDAQTYDVASK	1	0	Unmodified	1717.7431	0.7431232	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								14.085	14.085	2	3.5236E-05	7296	DP690-9	125.84	104.78			0.84194	1.0741	NaN	1	0	Median	9500500	4250100	5250400	11525	2217	10728	22418	54356;54357;54358;54359	54356		4	9606
QGSEIQDSPDFR	0	1	Unmodified	1377.6161	0.61607219	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	8.8	2.93			1							3	1						14.022	14.022	2	1.176E-09	8006	DP690-11	233.84	198.66			0.76732	0.86472	11.073	3	0	Median	377400000	182590000	194800000	11526	1758	10729	22419;22420;22421;22422;22423	54360;54361;54362;54363;54364;54365;54366;54367;54368;54369	54366		10	9606
QGSSLWLSLTFR	0	1	Acetyl (Protein N-term)	1435.746	0.74596415	2254	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	1	0	0	9	0									1								13.869	13.869	3	0.057446	7105	DP690-9	41.109	18.081			0.81991	0.99269	NaN	1	0	Median	30999000	17788000	13211000	11527	2254	10730	22424	54370	54370		0	9606
QGTPVVQGSLELER	0	1	Unmodified	1511.7944	0.79437091	1554	Q7Z6M4	MTERF4	Transcription termination factor 4, mitochondrial;mTERF domain-containing protein 2 processed	yes	yes	0	0	0	14	0														1			15.822	15.822	2	1.8833E-05	10022	DP690-14	128.01	100.37			0.61197	0.74659	NaN	1	0	Median	17875000	10471000	7403500	11528	1554	10731	22425	54371;54372	54371		2	9606
QGTTPPIWHLTDK	1	0	Unmodified	1492.7674	0.76742787	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	10.3	0.943									1		2						15.699	15.699	3	0.00050075	10380	DP690-11	97.631	53.017			0.78198	0.91627	1.2393	2	0	Median	610870000	445420000	165450000	11529	897	10732	22426;22427;22428	54373;54374;54375;54376;54377;54378;54379;54380;54381	54373		9	9606
QGTVALQEAQDTMQGTSR	0	1	Oxidation (M)	1935.8956	0.89561787	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	1	0	10	0										2							13.061	13.061	2	0.00030343	6738	DP690-10	151.3	107.34			NaN	NaN	NaN	0	0	Median	12444000	12444000	0	11530	1234	10733	22429;22430	54382;54383;54384	54384	1888	3	9606
QGTVALQEAQDTMQGTSR	0	1	Unmodified	1919.9007	0.90070325	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	0	10	0										1							15.654	15.654	2	5.3704E-15	10477	DP690-10	209.19	133.96			NaN	NaN	NaN	0	0	Median	0	0	0	11531	1234	10733	22431	54385	54385		1	9606
QGVDADINGLR	0	1	Unmodified	1156.5836	0.58364985	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.5	1.12	1	1	1	1													14.887	14.887	2	4.0465E-16	7561	DP690-2	195.05	93.834		+	NaN	NaN	NaN	0	0	Median	163880000	163880000	0	11532	667	10734	22432;22433;22434;22435	54386;54387;54388;54389;54390;54391;54392;54393	54389		8	9606
QGVHAAGAAEAGPLASVPAQSAK	1	0	Unmodified	2087.076	0.075965495	1867	Q96H79	ZC3HAV1L	Zinc finger CCCH-type antiviral protein 1-like	yes	yes	0	0	0	6	0						1											13.505	13.505	3	2.4529E-05	6299	DP690-6	124.45	102.23			0.70527	0.7986	NaN	1	0	Median	20573000	11318000	9255300	11533	1867	10735	22436	54394;54395	54395		2	9606
QGVQVQVSTSNISSLEGAR	0	1	Unmodified	1959.0021	0.0021318501	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.33	0.471		2	1														16.989	16.989	2	3.1101E-64	10110	DP690-2	293.41	197.92			NaN	NaN	NaN	0	0	Median	4296200	0	4296200	11534	789	10736	22437;22438;22439	54396;54397;54398;54399	54396		4	9606
QGYVLSSIEGR	0	1	Unmodified	1207.6197	0.619701	185	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	14	0														3			16.157	16.157	2	0.00038019	10440	DP690-14	147.73	70.199			NaN	NaN	NaN	0	0	Median	159340000	159340000	0	11535	185	10737	22440;22441;22442	54400;54401;54402;54403	54400		4	9606
QHCCPAGYTCNVK	1	0	Unmodified	1593.6487	0.64865142	611	P28799	GRN	Granulins;Acrogranin;Paragranulin;Granulin-1;Granulin-2;Granulin-3;Granulin-4;Granulin-5;Granulin-6;Granulin-7	yes	yes	0	0	0	8	0								1									10.349	10.349	3	0.033997	2906	DP690-8	71.976	47.7			NaN	NaN	NaN	0	0	Median	3213300	0	3213300	11536	611	10738	22443	54404;54405	54404		2	9606
QHEEYIADMALDPAKK	2	0	Oxidation (M)	1873.888	0.88801329	2128	Q9H6Y2	WDR55	WD repeat-containing protein 55	yes	yes	0	1	1	13	0													1				13.067	13.067	3	2.4798E-09	5992	DP690-13	181.69	126.88			0.79008	0.89765	NaN	1	0	Median	25705000	13725000	11980000	11537	2128	10739	22444	54406	54406	2625	1	9606
QHELSESCSASALQAR	0	1	Unmodified	1772.8112	0.81115996	1692	Q8NEZ2	VPS37A	Vacuolar protein sorting-associated protein 37A	yes	yes	0	0	0	5	0					1												12.141	12.141	3	0.00091305	4632	DP690-5	84.046	71.901			0.78965	0.8269	NaN	1	0	Median	12621000	7182000	5439200	11538	1692	10740	22445	54407	54407		1	9606
QHFPATPLLDYALEVEK	1	0	Unmodified	1970.0149	0.014928368	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	7	4			1								1						20.755	20.755	3	9.3559E-08	17628	DP690-11	148.41	117.99			1.0185	1.1582	7.0352	2	0	Median	66848000	34328000	32519000	11539	873	10741	22446;22447	54408;54409;54410;54411;54412;54413;54414	54409		7	9606
QHHPPYHQQHHQGPPPGGPGGR	0	1	Unmodified	2402.1278	0.12777534	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	10.5	0.5										1	1						9.7478	9.7478	5	0.00059969	1984	DP690-11	73.76	65.836			0.40774	0.48827	18.75	2	0	Median	14838000	9497200	5340600	11540	566	10742	22448;22449	54415;54416;54417;54418;54419;54420	54418		6	9606
QHIPLEEYAANLK	1	0	Unmodified	1524.7936	0.79364262	1381	Q2TAA2	IAH1	Isoamyl acetate-hydrolyzing esterase 1 homolog	yes	yes	0	0	0	7	0							1										16.718	16.718	3	0.0001269	10411	DP690-7	110.98	74.977			0.8732	0.9404	NaN	1	0	Median	42335000	26401000	15933000	11541	1381	10743	22450	54421;54422	54421		2	9606
QHLEITGGQVR	0	1	Unmodified	1236.6575	0.65748349	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	3	0			2														11.591	11.591	2;3	0.00028413	4134	DP690-3	120.45	77.583			0.86594	0.96197	NaN	1	0	Median	11608000	8675200	2933200	11542	770	10744	22451;22452	54423;54424;54425;54426;54427;54428	54424		6	9606
QHLFYGQYEGK	1	0	Unmodified	1368.6463	0.64625011	1908	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	3	0			1														13.394	13.394	2	0.016583	6567	DP690-3	73.841	59.147			0.65983	0.70764	NaN	1	0	Median	15676000	10062000	5613600	11543	1908	10745	22453	54429	54429		1	9606
QHMDITGEENPLNK	1	0	Oxidation (M)	1640.7464	0.74643444	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	1	0	4	0				1													12.702	12.702	3	0.016585	5480	DP690-4	59.75	59.75			0.85289	0.9326	NaN	1	0	Median	17596000	7666800	9929100	11544	2116	10746	22454	54430;54431	54431	2620	2	9606
QHSVVPSQIFELEDGTSSYK	1	0	Unmodified	2250.0804	0.080441751	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												1					18.198	18.198	3	0.015906	13331	DP690-12	50.237	38.369			NaN	NaN	NaN	0	0	Median	21645000	21645000	0	11545	1750	10747	22455	54432	54432		1	9606
QHTFVETESVR	0	1	Unmodified	1331.647	0.64697839	775	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	4	0				1													11.645	11.645	3	0.0086181	4316	DP690-4	89.9	48.211			NaN	NaN	NaN	0	0	Median	13385000	0	13385000	11546	775	10748	22456	54433	54433		1	9606
QIAASSQDSVGR	0	1	Unmodified	1217.6	0.60002819	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											5						10.597	10.597	2	3.1253E-39	2953	DP690-11	275.28	203.05			0.96814	1.0226	NaN	1	0	Median	577350000	203020000	374330000	11547	891	10749	22457;22458;22459;22460;22461	54434;54435;54436;54437;54438	54435		5	9606
QIAEEDFYEK	1	0	Unmodified	1270.5717	0.57174776	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	7	4			1								1						14.981	14.981	2	0.00074543	9328	DP690-11	111.61	65.635			0.9063	1.0224	10.89	2	0	Median	113740000	59163000	54581000	11548	653	10750	22462;22463	54439;54440;54441;54442;54443	54439		5	9606
QIALAVLSTELAVR	0	1	Unmodified	1482.877	0.87697832	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															21.362	21.362	2	5.1467E-05	15005	DP690-2	149.94	149.94			1.3691	1.4156	NaN	1	0	Median	4216400	1580100	2636300	11549	602	10751	22464	54444;54445;54446;54447	54445		4	9606
QIATLHAQVADMK	1	0	Oxidation (M)	1440.7395	0.73949856	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															11.674	11.674	2	0.0071724	3843	DP690-2	86.189	61.063			1.0935	1.0868	NaN	1	0	Median	3393300	1509700	1883600	11550	668	10752	22465	54448;54449	54449	963	2	9606
QIATLHAQVADMKK	2	0	Oxidation (M)	1568.8345	0.83446158	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	2	0		1															10.476	10.476	3	0.023897	2557	DP690-2	52.5	25.675			0.97759	1.0149	NaN	1	0	Median	26233000	13169000	13064000	11551	668	10753	22466	54450	54450	963	1	9606
QIEILELEDLEKECSLAR	1	1	Unmodified	2187.1093	0.10929904	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	1	10	0										1							20.318	20.318	3	0.00079955	17226	DP690-10	138.98	93.101			NaN	NaN	NaN	0	0	Median	57302000	57302000	0	11552	1156	10754	22467	54451;54452	54451		2	9606
QIESLETEMEFR	0	1	Oxidation (M)	1526.6923	0.6922736	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	1	0	10	0										1							15.937	15.937	2	0.0029064	10909	DP690-10	97.472	70.5			0.74768	0.92917	NaN	1	0	Median	85926000	56884000	29042000	11553	311	10755	22468	54453;54454	54453	321	2	9606
QIESLETEMEFR	0	1	Unmodified	1510.6974	0.69735898	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										1							18.349	18.349	2	2.9598E-05	14391	DP690-10	157.75	85.502			NaN	NaN	NaN	0	0	Median	21720000	21720000	0	11554	311	10755	22469	54455	54455		1	9606
QIFILLFQR	0	1	Unmodified	1176.7019	0.70191449	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														22.183	22.183	2	0.005066	17680	DP690-3	147.69	80.7			NaN	NaN	NaN	0	0	Median	5815000	5815000	0	11555	892	10756	22470	54456;54457	54456		2	9606
QIFLGGVDK	1	0	Unmodified	975.53893	0.53893149	381;473	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	15	0															2		15.615	15.615	2	0.067081	9533	DP690-15	88.177	34.825			NaN	NaN	NaN	0	0	Median	223920000	0	223920000	11556	381;473	10757	22471;22472	54458;54459	54459		2	9606
QIFLGGVDKHTQFWR	1	1	Unmodified	1830.9529	0.95293723	473	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	1	14	0														1			16.664	16.664	4	0.0015114	11220	DP690-14	77.192	59.686			0.68689	0.86394	NaN	1	0	Median	27642000	14302000	13340000	11557	473	10758	22473	54460;54461	54461		2	9606
QIFLGGVDKR	1	1	Unmodified	1131.64	0.64004252	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	1	12.3	2.83									3	1				2	2	1	13.539	13.539	2;3	0.00011565	6836	DP690-14	173.39	127.26			0.88396	1.0662	18.187	8	0	Median	685860000	380250000	305610000	11558	381	10759	22474;22475;22476;22477;22478;22479;22480;22481;22482	54462;54463;54464;54465;54466;54467;54468;54469;54470;54471;54472;54473;54474;54475;54476;54477;54478;54479;54480;54481;54482;54483;54484;54485;54486;54487;54488;54489;54490	54471		29	9606
QIFNGTFVK	1	0	Unmodified	1052.5655	0.56548059	525	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	15	0															1		16.192	16.192	2	0.0089636	10384	DP690-15	90.601	37.249			0.84357	0.95774	NaN	1	0	Median	77225000	39991000	37234000	11559	525	10760	22483	54491	54491		1	9606
QIGDNLIVPGGVK	1	0	Unmodified	1308.7402	0.74015049	1260	Q14195	DPYSL3	Dihydropyrimidinase-related protein 3	yes	yes	0	0	0	4	0				1													17.178	17.178	2	4.3112E-05	11359	DP690-4	126.39	87.673			0.75972	0.81889	NaN	1	0	Median	33825000	19306000	14520000	11560	1260	10761	22484	54492;54493;54494;54495	54495		4	9606
QIGENLIVPGGVK	1	0	Unmodified	1322.7558	0.75580056	1359;1259	Q14194;Q16555	CRMP1;DPYSL2	Dihydropyrimidinase-related protein 1;Dihydropyrimidinase-related protein 2	no	no	0	0	0	8	4				1								1					17.032	17.032	2	0.00072695	11202	DP690-4	106.2	79.227			0.75602	0.85523	2.8365	2	0	Median	105750000	59569000	46180000	11561	1259;1359	10762	22485;22486	54496;54497;54498;54499	54499		4	9606
QIGNVAALPGIVHR	0	1	Unmodified	1443.831	0.83103118	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	9.33	3.77				1								2					16.063	16.063	2;3	9.6759E-06	10394	DP690-12	130.69	130.69			0.64646	0.71948	32.128	2	0	Median	463260000	244540000	218720000	11562	2475	10763	22487;22488;22489	54500;54501;54502;54503;54504;54505;54506;54507	54500		8	9606
QIIEEQSGSYIWVPAK	1	0	Unmodified	1846.9465	0.94651445	1173	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	11	0											1						18.469	18.469	2	0.016277	14424	DP690-11	67.385	44.373			0.87747	1.0708	NaN	1	0	Median	26714000	15385000	11328000	11563	1173	10764	22490	54508	54508		1	9606
QIILEKEETEELKR	2	1	Unmodified	1756.9571	0.95707914	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	2	4	0				1													13.378	13.378	4	3.5027E-05	6364	DP690-4	172.76	158.32			3.1258	3.3915	NaN	1	0	Median	59159000	12657000	46502000	11564	479	10765	22491	54509	54509		1	9606
QIIPPGFCTNTNDFLSLLEK	1	0	Unmodified	2306.1617	0.16166896	119	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	5	0					1												23.804	23.804	2	2.2394E-05	19018	DP690-5	125.28	125.28			0.82699	0.82939	NaN	1	0	Median	7162700	4066200	3096600	11565	119	10766	22492	54510;54511;54512;54513;54514	54513		5	9606
QIITFFSPLTILVGPNGAGK	1	0	Unmodified	2072.167	0.16701233	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	10	0										3							25.189	25.189	2	0.00051408	23262	DP690-10	144.51	100.91			NaN	NaN	NaN	0	0	Median	2076000	0	2076000	11566	1794	10767	22493;22494;22495	54515;54516;54517;54518	54517		4	9606
QILEDAAALIIHHVK	1	0	Unmodified	1669.9515	0.95154025	1927	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	10	0										1							19.578	19.578	3	0.0027103	16156	DP690-10	74.133	63.666			0.73474	0.90687	NaN	1	0	Median	56770000	32992000	23778000	11567	1927	10768	22496	54519	54519		1	9606
QILLGPNTGLSGGMPGALPSLPGK	1	0	Oxidation (M)	2290.2355	0.2355026	2207	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	1	0	16	0																1	19.68	19.68	2	0.012885	14378	DP690-16	82.259	47.142			NaN	NaN	NaN	0	0	Median	1900800	1900800	0	11568	2207	10769	22497	54520;54521	54521	2682	2	9606
QILLGPNTGLSGGMPGALPSLPGKI	1	0	Oxidation (M)	2403.3196	0.31956659	2207	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	1	1	16	0																1	20.956	20.956	2	1.6966E-07	15681	DP690-16	144.08	144.08			0.61853	0.72388	NaN	1	0	Median	16421000	10570000	5851300	11569	2207	10770	22498	54522;54523;54524;54525	54522	2682	4	9606
QILLYSATFPLSVQK	1	0	Unmodified	1706.9607	0.96070795	589	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	8	4				1								1					20.913	20.913	2	6.7929E-09	17011	DP690-12	196.11	161.34			0.78152	0.88747	17.147	2	0	Median	18330000	9315800	9014000	11570	589	10771	22499;22500	54526;54527;54528;54529;54530;54531;54532	54528		7	9606
QILMASGSTTFTK	1	0	Oxidation (M)	1399.7017	0.70171607	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	1	0	10	0										1							14.404	14.404	2	0.011939	8657	DP690-10	78.342	55.812			0.79627	0.98228	NaN	1	0	Median	55401000	26390000	29011000	11571	1492	10772	22501	54533;54534;54535	54533	2182	3	9606
QILMASGSTTFTK	1	0	Unmodified	1383.7068	0.70680145	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							15.833	15.833	2	0.0749	10750	DP690-10	83.081	9.8482			NaN	NaN	NaN	0	0	Median	0	0	0	11572	1492	10772	22502	54536	54536		1	9606
QILSADDKTVR	1	1	Unmodified	1244.6725	0.67246486	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	1	14	0														1			11.144	11.144	3	0.044324	3636	DP690-14	72.531	32.951			NaN	NaN	NaN	0	0	Median	0	0	0	11573	2474	10773	22503	54537	54537		1	9606
QINVSTDDSEVK	1	0	Unmodified	1333.6361	0.63613893	166	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	12	0												1					12.771	12.771	2	0.01354	5915	DP690-12	73.887	48.313			0.90908	1.0925	NaN	1	0	Median	26391000	11752000	14639000	11574	166	10774	22504	54538;54539	54538		2	9606
QIPQATASMK	1	0	Unmodified	1073.5539	0.55392962	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	4	0				1													11.772	11.772	2	0.0082329	4366	DP690-4	86.136	43.739			1.3019	1.4286	NaN	1	0	Median	13693000	5931200	7761400	11575	167	10775	22505	54540;54541;54542	54542		3	9606
QIPVLQTNNGPSLTGLTTIAAHLVK	1	0	Unmodified	2585.4541	0.45408623	175	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	16	0																1	22.202	22.202	3	0.019214	17163	DP690-16	43.035	31.183			0.91628	1.0669	NaN	1	0	Median	2692400	1231500	1460900	11576	175	10776	22506	54543	54543		1	9606
QIPYQPQNNHDSLLSR	0	1	Unmodified	1908.9442	0.94422304	252	O75386	TULP3	Tubby-related protein 3	yes	yes	0	0	0	13	0													1				14.512	14.512	3	0.05559	8174	DP690-13	42.242	42.242			0.71385	0.87759	NaN	1	0	Median	26028000	14983000	11046000	11577	252	10777	22507	54544	54544		1	9606
QIQELVEAIVLPMNHK	1	0	Oxidation (M)	1877.0081	0.0080688509	519	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	1	0	5	0					1												20.015	20.015	3	4.4913E-05	14369	DP690-5	121.95	105.43			0.97412	0.97413	NaN	1	0	Median	19557000	8772600	10785000	11578	519	10778	22508	54545;54546	54546	663	2	9606
QIQITQLFGVPVVVALNVFK	1	0	Unmodified	2212.2984	0.29836086	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											3						27.703	27.703	2	1.0016E-13	25614	DP690-11	177.1	142.42			NaN	NaN	NaN	0	0	Median	978920	978920	0	11579	1504	10779	22509;22510;22511	54547;54548;54549;54550	54548		4	9606
QIQLLLQYLK	1	0	Unmodified	1258.7649	0.76490868	2233	Q9NVH2	INTS7	Integrator complex subunit 7	yes	yes	0	0	0	11	0											1						21.335	21.335	2	0.034256	18495	DP690-11	90.37	49.383			NaN	NaN	NaN	0	0	Median	3460300	0	3460300	11580	2233	10780	22512	54551	54551		1	9606
QIQQLESNNR	0	1	Unmodified	1228.616	0.61601261	235	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	2.5	0.5		1	1														10.95	10.95	2	0.00013547	3329	DP690-3	172.23	99.443			NaN	NaN	NaN	0	0	Median	0	0	0	11581	235	10781	22513;22514	54552;54553	54553		2	9606
QISEQLNALNK	1	0	Unmodified	1256.6725	0.67246486	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								14.478	14.478	2	0.061954	7862	DP690-9	58.246	58.246			0.49882	0.63643	NaN	1	0	Median	9635600	6765600	2870000	11582	2411	10782	22515	54554	54554		1	9606
QISNLQQSISDAEQR	0	1	Unmodified	1715.8438	0.84384029	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	7.36	4.9	1	1	1	1	1	1		1	1			1			1	1	16.272	16.272	2	4.3037E-35	10115	DP690-4	293.71	203.88		+	NaN	NaN	NaN	0	0	Median	303260000	303260000	0	11583	369	10783	22516;22517;22518;22519;22520;22521;22522;22523;22524;22525;22526	54555;54556;54557;54558;54559;54560;54561;54562;54563;54564;54565;54566;54567;54568;54569;54570;54571;54572;54573;54574;54575;54576;54577;54578;54579;54580;54581;54582	54569		28	9606
QISNLQQSISDAEQRGENALK	1	1	Unmodified	2328.167	0.16696535	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	1																18.836	18.836	3	9.0147E-08	10452	DP690-1	195.45	158.7		+	NaN	NaN	NaN	0	0	Median	5540800	5540800	0	11584	369	10784	22527	54583;54584	54584		2	9606
QISNLQQSISDAEQRGENALKDAK	2	1	Unmodified	2642.326	0.32598518	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	2	9	0									1								18.968	18.968	4	0.022876	13580	DP690-9	123.83	96.186		+	NaN	NaN	NaN	0	0	Median	11227000	11227000	0	11585	369	10785	22528	54585	54585		1	9606
QISQAYEVLSDAK	1	0	Unmodified	1450.7304	0.73037367	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	9	4					1								1				16.627	16.627	2	4.659E-06	10960	DP690-13	192.5	121.94			1.1431	1.2013	19.229	2	0	Median	275230000	139240000	135980000	11586	636	10786	22529;22530	54586;54587;54588;54589;54590;54591	54589		6	9606
QISSFMSEISDEFK	1	0	Oxidation (M)	1662.7447	0.7447031	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	1	0	3	0			1														18.913	18.913	2	0.00028611	13711	DP690-3	142.1	98.492			NaN	NaN	NaN	0	0	Median	6877900	0	6877900	11587	2515	10787	22531	54592;54593	54593	2955	2	9606
QITLNDLPVGR	0	1	Unmodified	1224.6826	0.68263561	1188	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	7	0							1										17.7	17.7	2	0.0028274	11722	DP690-7	131.12	52.6			NaN	NaN	NaN	0	0	Median	11738000	0	11738000	11588	1188	10788	22532	54594;54595	54594		2	9606
QITLNDMESVDSEYYNSLK	1	0	Oxidation (M)	2264.0155	0.015458232	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	1	0	3	0			1														18.16	18.16	2	3.0719E-22	12786	DP690-3	217.68	201.73			1.2906	1.361	NaN	1	0	Median	8312900	3791300	4521600	11589	1911	10789	22533	54596;54597;54598;54599	54597	2452	4	9606
QITQSALLAEAR	0	1	Unmodified	1299.7147	0.71466402	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7	3.56		1							1	1							15.782	15.782	2	2.7824E-05	9666	DP690-9	187.99	136.46			0.84087	0.92975	7.7958	3	0	Median	848450000	461520000	386930000	11590	1046	10790	22534;22535;22536	54600;54601;54602;54603;54604;54605;54606;54607	54604		8	9606
QITSYGETCPGLEQYAIK	1	0	Unmodified	2056.9776	0.97755658	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	9.33	3.77				1								2					17.65	17.65	2	4.1247E-22	11926	DP690-4	213.99	186.02			1.6019	1.7439	NaN	1	0	Median	17882000	11287000	6595600	11591	826	10791	22537;22538;22539	54608;54609;54610;54611;54612;54613;54614	54611		7	9606
QITVNDLPVGR	0	1	Unmodified	1210.667	0.66698555	1128;643	Q06830;P32119	PRDX1;PRDX2	Peroxiredoxin-1;Peroxiredoxin-2	no	no	0	0	0	12.3	4.12		1					4	1	1						13	1	20.383	20.383	2	7.9109E-05	10329	DP690-15	172.94	172.94			0.84484	0.72183	13.539	14	0	Linear	10902000000	5823600000	5078200000	11592	1128;643	10792	22540;22541;22542;22543;22544;22545;22546;22547;22548;22549;22550;22551;22552;22553;22554;22555;22556;22557;22558;22559;22560	54615;54616;54617;54618;54619;54620;54621;54622;54623;54624;54625;54626;54627;54628;54629;54630;54631;54632;54633;54634;54635;54636;54637;54638;54639;54640;54641;54642;54643;54644;54645;54646;54647;54648;54649;54650;54651;54652;54653;54654;54655;54656;54657;54658;54659;54660;54661;54662;54663;54664;54665;54666;54667	54616		53	9606
QIVDAQAVCTR	0	1	Unmodified	1259.6292	0.62921983	616	P29590	PML	Protein PML	yes	yes	0	0	0	12	0												1					13.145	13.145	2	0.045408	6389	DP690-12	87.806	51.425			NaN	NaN	NaN	0	0	Median	8808100	8808100	0	11593	616	10793	22561	54668	54668		1	9606
QIWNSPAISVK	1	0	Unmodified	1241.6768	0.67682195	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	13	0													1				16.8	16.8	2	0.030277	11257	DP690-13	69.01	24.633			0.87226	1.008	NaN	1	0	Median	62640000	32410000	30230000	11594	1597	10794	22562	54669;54670	54670		2	9606
QIYPPINVLPSLSR	0	1	Unmodified	1595.9035	0.90352742	547	P21281;P15313	ATP6V1B2;ATP6V1B1	V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform	yes	no	0	0	0	8	4				1								1					20.556	20.556	2	0.0034225	16611	DP690-12	86.911	66.596			0.63185	0.7501	0.66521	2	0	Median	9750000	5340600	4409400	11595	547	10795	22563;22564	54671;54672;54673;54674	54671		4	9606
QKDFLDGVYAFEYYPSTPGR	1	1	Unmodified	2352.1063	0.10626257	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										2							20.328	20.328	2;3	1.1331E-06	17159	DP690-10	131.54	116.27			0.61669	0.7324	NaN	1	0	Median	182200000	103890000	78312000	11596	250	10796	22565;22566	54675;54676;54677	54675		3	9606
QKDYETATLSEIK	2	0	Unmodified	1524.7672	0.7671531	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	1	3	0			1														14.254	14.254	3	0.0072339	7661	DP690-3	71.529	50.789			1.8304	1.9773	NaN	1	0	Median	22707000	8094100	14613000	11597	476	10797	22567	54678	54678		1	9606
QKEFDPTITDASLSLPSR	1	1	Unmodified	2004.0164	0.016384931	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	1	11	0											2						17.418	17.418	2	0.00016051	12962	DP690-11	146.59	81.091			NaN	NaN	NaN	0	0	Median	11604000	11604000	0	11598	1119	10798	22568;22569	54679;54680	54679		2	9606
QKGYEEEIIHFKK	3	0	Unmodified	1647.8621	0.86205654	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	2	10	0										1							12.885	12.885	3	0.079238	6460	DP690-10	46.985	30.239			0.75844	0.81341	NaN	1	0	Median	63218000	30485000	32733000	11599	1794	10799	22570	54681	54681		1	9606
QKHSQAVEELAEQLEQTKR	2	1	Unmodified	2251.1557	0.15567238	668	P35579	MYH9	Myosin-9	yes	yes	0	0	2	2	0		1															15.034	15.034	4	0.0013906	7746	DP690-2	87.429	75.36			1.1579	1.1905	NaN	1	0	Median	19701000	8375400	11325000	11600	668	10800	22571	54682;54683	54683		2	9606
QKNGDTSTEEPMLNVQR	1	1	Oxidation (M)	1961.9113	0.91126793	1056	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	1	1	15	0															1		12.027	12.027	3	0.055705	4807	DP690-15	42.095	26.161			0.92997	1.1164	NaN	1	0	Median	8392000	3716100	4676000	11601	1056	10801	22572	54684	54684	1653	1	9606
QKPSNTEDFIEDIVK	2	0	Unmodified	1761.8785	0.87849447	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	10.3	2.81				1					1		2	2	1				18.436	18.436	2;3	9.8413E-06	13695	DP690-12	138.01	100.66			0.75944	0.86554	18.174	5	0	Median	604560000	305540000	299020000	11602	751	10802	22573;22574;22575;22576;22577;22578;22579	54685;54686;54687;54688;54689;54690;54691;54692;54693;54694;54695;54696;54697;54698	54688		14	9606
QKQEEESLGQVTDQVEVNAQNSVPDEEAK	2	0	Unmodified	3227.5066	0.5065879	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	1	11	0											1						17.269	17.269	3	3.592E-12	12673	DP690-11	150.06	138.35			0.70065	0.79441	NaN	1	0	Median	148220000	83575000	64645000	11603	1119	10803	22580	54699;54700;54701;54702	54699		4	9606
QKTPGNGDGGSTSETPQPPR	1	1	Unmodified	2009.9403	0.94025987	2323	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	yes	yes	0	0	1	14	0														1			10.401	10.401	3	4.1071E-05	2632	DP690-14	110.56	86.669			NaN	NaN	NaN	0	0	Median	6027800	6027800	0	11604	2323	10804	22581	54703	54703		1	9606
QKVDSLLENLEK	2	0	Unmodified	1414.7668	0.76675917	410	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	14	0														2			16.655	16.655	3	7.9705E-06	11123	DP690-14	190.35	149.58			0.82873	0.92346	NaN	1	0	Median	308150000	168920000	139230000	11605	410	10805	22582;22583	54704;54705;54706;54707;54708	54706		5	9606
QKVEGTEPTTAFNLFVGNLNFNK	2	0	Unmodified	2567.302	0.30200227	534	P19338	NCL	Nucleolin	yes	yes	0	0	1	11	0											1						21.218	21.218	3	0.00070387	18244	DP690-11	74.742	55.432			0.84874	0.99353	NaN	1	0	Median	58114000	29416000	28698000	11606	534	10806	22584	54709;54710;54711	54710		3	9606
QLAAAFHEEFVVR	0	1	Unmodified	1515.7834	0.78341229	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	12	0												1					16.586	16.586	3	0.0014974	11243	DP690-12	104.17	104.17			0.95482	1.137	NaN	1	0	Median	33768000	14084000	19684000	11607	829	10807	22585	54712;54713	54712		2	9606
QLAALNCSVR	0	1	Unmodified	1130.5866	0.58662674	2379	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	12	0												1					13.715	13.715	2	0.013332	7170	DP690-12	105.1	58.711			NaN	NaN	NaN	0	0	Median	22920000	22920000	0	11608	2379	10808	22586	54714;54715	54715		2	9606
QLADETLLK	1	0	Unmodified	1029.5706	0.57062555	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					15.477	15.477	2	0.020944	9737	DP690-12	78.516	29.756			0.76764	0.89217	NaN	1	0	Median	106420000	61201000	45223000	11609	544	10809	22587	54716;54717;54718;54719	54717		4	9606
QLAEEDLAQQR	0	1	Unmodified	1299.6419	0.64189301	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.2	3.12		1							1	3							13.403	13.403	2	3.6718E-08	7209	DP690-10	199.7	112.82			0.7397	0.7929	11.279	2	0	Median	272610000	81886000	190730000	11610	1319	10810	22588;22589;22590;22591;22592	54720;54721;54722;54723;54724;54725;54726;54727;54728;54729	54723		10	9606
QLAEFVPLDYSVPIEIPTIK	1	0	Unmodified	2271.2402	0.24023686	2178	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	yes	yes	0	0	0	13	0													1				23.823	23.823	2	0.033094	20040	DP690-13	102.5	62.844			NaN	NaN	NaN	0	0	Median	887640	887640	0	11611	2178	10811	22593	54730	54730		1	9606
QLASGLLELAFAFGGLCER	0	1	Unmodified	2051.051	0.050996298	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								26.838	26.838	2	8.6368E-30	22295	DP690-9	236.12	212.31			0.89949	1.1205	NaN	1	0	Median	3210900	1696300	1514600	11612	1046	10812	22594	54731;54732;54733;54734;54735;54736;54737	54735		7	9606
QLASGLLLVTGPLVLNR	0	1	Unmodified	1763.0669	0.066904359	1098	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	7.5	6.5	1													1			22.651	22.651	2	9.0416E-28	18931	DP690-14	288.61	288.61			0.83354	1.0059	NaN	1	0	Median	62355000	33425000	28930000	11613	1098	10813	22595;22596	54738;54739;54740;54741	54741		4	9606
QLAVAEGKPPEAPK	2	0	Unmodified	1433.7878	0.78782897	905	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	3	0			1														11.987	11.987	3	0.0025863	4628	DP690-3	77.204	65.289			0.7907	0.858	NaN	1	0	Median	14360000	8308800	6051500	11614	905	10814	22597	54742;54743;54744;54745	54742		4	9606
QLCDNAGFDATNILNK	1	0	Unmodified	1792.8414	0.84139745	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	4	0				2													18.306	18.306	2	5.4387E-05	12694	DP690-4	154.67	78.508			NaN	NaN	NaN	0	0	Median	28304000	9715000	18589000	11615	1959	10815	22598;22599	54746;54747;54748;54749	54746		4	9606
QLDDEEVSEFALDGLK	1	0	Unmodified	1806.8523	0.85233929	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							20.713	20.713	2	1.1624E-08	17734	DP690-10	179.35	132.29			1.034	1.2711	NaN	1	0	Median	44214000	24464000	19750000	11616	1782	10816	22600	54750;54751;54752	54751		3	9606
QLDDKDEEINQQSQLVEK	2	0	Unmodified	2158.039	0.038970866	648	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	1	3	0			1														13.782	13.782	3	0.00073082	7095	DP690-3	84.403	50.51			0.74838	0.81011	NaN	1	0	Median	18396000	8297400	10098000	11617	648	10817	22601	54753;54754	54753		2	9606
QLDDLKVELSQLR	1	1	Unmodified	1555.857	0.85697116	733	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	1	16	0																2	18.305	18.305	2;3	4.5765E-05	12683	DP690-16	186.74	140.33			0.86282	0.97424	0.48323	2	0	Median	58722000	31015000	27707000	11618	733	10818	22602;22603	54755;54756;54757;54758;54759;54760	54755		6	9606
QLDEASGANDEIVQLR	0	1	Unmodified	1756.8592	0.85915601	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	9.67	0.471									1	2							16.718	16.718	2	1.4963E-35	12032	DP690-10	233.32	134.04			NaN	NaN	NaN	0	0	Median	21956000	21956000	0	11619	106	10819	22604;22605;22606	54761;54762;54763;54764	54761		4	9606
QLDEYSSSVANFLQAR	0	1	Unmodified	1826.8799	0.87989145	1487	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	yes	yes	0	0	0	12	0												1					20.409	20.409	2	0.025946	16386	DP690-12	101.72	69.711			NaN	NaN	NaN	0	0	Median	0	0	0	11620	1487	10820	22607	54765	54765		1	9606
QLDQCSAFVNEIETIESSLK	1	0	Unmodified	2310.1049	0.10494194	765	P46939	UTRN	Utrophin	yes	yes	0	0	0	10	0										1							24.798	24.798	2	2.3759E-21	22898	DP690-10	209.22	158.73			NaN	NaN	NaN	0	0	Median	2955200	2955200	0	11621	765	10821	22608	54766;54767	54766		2	9606
QLDSIVGER	0	1	Unmodified	1015.5298	0.52982336	43;31	CON__P02538;P02538;CON__P48668;P48668;CON__P13647;P13647	KRT6A;KRT6C;KRT5	Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5	no	no	0	0	0	7.5	5.68	1			1					1							1	14.114	14.114	2	0.0041911	5833	DP690-1	127.46	42.301		+	NaN	NaN	NaN	0	0	Median	73456000	73456000	0	11622	31;43	10822	22609;22610;22611;22612	54768;54769;54770;54771;54772;54773;54774;54775	54769		8	9606
QLDYLGIPLFYGSGLTEFK	1	0	Unmodified	2160.1143	0.11430806	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	12.5	0.5												1	1				24.665	24.665	2	2.8317E-11	20928	DP690-13	166.86	166.86			0.7076	0.77777	NaN	1	0	Median	2214700	1241600	973110	11623	1589	10823	22613;22614	54776;54777;54778;54779;54780	54779		5	9606
QLEEAEEEAQR	0	1	Unmodified	1330.6001	0.60008777	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	8	3.55		1	1						1	2	2						11.733	11.733	2	1.0672E-16	4797	DP690-10	206.43	128.17			0.97525	1.1514	18.611	4	0	Median	128600000	45298000	83299000	11624	668	10824	22615;22616;22617;22618;22619;22620;22621	54781;54782;54783;54784;54785;54786;54787;54788;54789;54790;54791;54792;54793;54794;54795;54796	54784		16	9606
QLEEEQAVRPK	1	1	Unmodified	1325.6939	0.69392858	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	1	13	0													3				10.509	10.509	2;3	6.6597E-07	2793	DP690-13	195.83	165.49			0.84705	0.93157	9.8074	2	0	Median	413750000	228970000	184780000	11625	491	10825	22622;22623;22624	54797;54798;54799;54800;54801;54802;54803	54798		7	9606
QLEESVSEKEQQLLSTLK	2	0	Unmodified	2088.095	0.095029182	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	1	10	0										1							18.924	18.924	3	0.00025999	15243	DP690-10	97.129	81.187			0.92311	1.0661	NaN	1	0	Median	221560000	108520000	113050000	11626	311	10826	22625	54804;54805	54804		2	9606
QLELENLTTQETR	0	1	Unmodified	1573.7948	0.79476484	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	13	0													4				17.08	17.08	2	2.8657E-22	11583	DP690-13	250.26	139.21			NaN	NaN	NaN	0	0	Median	0	0	0	11627	521	10827	22626;22627;22628;22629	54806;54807;54808;54809	54806		4	9606
QLELRQEEER	0	2	Unmodified	1328.6684	0.66844211	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	12	0												1					11.143	11.143	3	0.034761	3749	DP690-12	56.432	9.6353			0.95965	1.0881	NaN	1	0	Median	32782000	15689000	17093000	11628	1322	10828	22630	54810;54811	54811		2	9606
QLEMSAEAER	0	1	Oxidation (M)	1178.5238	0.52375171	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	10	0										1							10.549	10.549	2	0.018612	3064	DP690-10	81.95	56.329			0.7836	0.9226	NaN	1	0	Median	257140000	140160000	116980000	11629	1319	10829	22631	54812	54812	2032	1	9606
QLEMSAEAER	0	1	Unmodified	1162.5288	0.52883709	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								12.645	12.645	2	0.0001013	5379	DP690-9	143.7	34.691			0.90965	1.101	NaN	1	0	Median	31173000	16738000	14436000	11630	1319	10829	22632	54813;54814;54815;54816	54814		4	9606
QLETQADPTGR	0	1	Unmodified	1214.5891	0.58912916	1960	Q99836	MYD88	Myeloid differentiation primary response protein MyD88	yes	yes	0	0	0	6	0						3											10.96	10.96	2	4.0786E-05	3391	DP690-6	212.21	96.496			0.61399	0.70341	NaN	1	0	Median	6182900	3890200	2292700	11631	1960	10830	22633;22634;22635	54817;54818;54819;54820	54820		4	9606
QLEVYTSGGDPESVAGEYGR	0	1	Unmodified	2112.96	0.95999226	2429	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	12	0												1					17.031	17.031	2	6.4811E-18	11953	DP690-12	209.13	172.83			0.73071	0.87933	NaN	1	0	Median	18205000	8146900	10059000	11632	2429	10831	22636	54821;54822;54823;54824	54824		4	9606
QLFEIDSVDTEGKGDIQQAR	1	1	Unmodified	2248.0972	0.097154447	2382	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	yes	yes	0	0	1	13	0													1				16.933	16.933	3	0.0063258	11457	DP690-13	58.123	42.779			0.82554	0.99909	NaN	1	0	Median	34746000	17731000	17016000	11633	2382	10832	22637	54825	54825		1	9606
QLFHPEQLITGK	1	0	Unmodified	1409.7667	0.76669959	1032;1521;1977;452;1033	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;Q9BQE3;P68366	TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain	no	no	0	0	0	7.67	3.82				1	2	1							2				16.823	16.823	2;3	3.6809E-10	10345	DP690-5	220.82	0			0.99667	1.0373	8.2211	6	0	Median	4873100000	2440500000	2432600000	11634	452;1032;1521;1977;1033	10833	22638;22639;22640;22641;22642;22643	54826;54827;54828;54829;54830;54831;54832;54833;54834;54835;54836;54837;54838;54839;54840;54841;54842;54843;54844;54845;54846;54847;54848;54849	54845		24	9606
QLFHPEQLITGKEDAANNYAR	1	1	Unmodified	2414.1979	0.19787154	1032;1521;1977;452;1033	P0DPH7;P0DPH8;P68363;Q71U36;Q9BQE3;P68366	TUBA1B;TUBA1A;TUBA1C;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain	no	no	0	0	1	9	4					2								2				16.246	16.246	3;4	1.8164E-48	10453	DP690-13	288.53	266.29			0.92255	0.95222	13.496	4	0	Median	4881700000	2516100000	2365600000	11635	452;1032;1521;1977;1033	10834	22644;22645;22646;22647	54850;54851;54852;54853;54854;54855;54856;54857;54858;54859;54860;54861;54862;54863;54864;54865;54866;54867;54868;54869	54856		20	9606
QLFLDVLDGTK	1	0	Unmodified	1247.6762	0.67615325	1427	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	10	0										1							21.012	21.012	2	0.00054432	18143	DP690-10	112.11	72.561			0.91264	1.1215	NaN	1	0	Median	34926000	18373000	16553000	11636	1427	10835	22648	54870;54871;54872	54870		3	9606
QLFLITNSPFSFVDK	1	0	Unmodified	1754.9243	0.92432245	2135	Q9H857	NT5DC2	5'-nucleotidase domain-containing protein 2	yes	yes	0	0	0	12	0												1					23.161	23.161	2	1.1574E-05	19671	DP690-12	133.32	88.705			0.51549	0.62417	NaN	1	0	Median	3298600	2239700	1058900	11637	2135	10836	22649	54873;54874;54875;54876	54874		4	9606
QLFLQTYAR	0	1	Unmodified	1138.6135	0.61349341	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														16.942	16.942	2	0.00094522	11345	DP690-3	126.52	76.807			2.2975	2.5775	NaN	1	0	Median	34185000	11180000	23005000	11638	878	10837	22650	54877	54877		1	9606
QLFSSLFSGILK	1	0	Unmodified	1338.7547	0.75473792	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	2.69		1							1	5	1						23.236	23.236	2	0.00024027	18536	DP690-9	143.4	65.134			0.89588	0.95971	3.4517	2	0	Median	151060000	39618000	111440000	11639	1046	10838	22651;22652;22653;22654;22655;22656;22657;22658	54878;54879;54880;54881;54882;54883;54884;54885;54886;54887;54888;54889;54890;54891	54889		14	9606
QLGEVAAFGGSNIEPSVR	0	1	Unmodified	1829.9272	0.92717599	765	P46939	UTRN	Utrophin	yes	yes	0	0	0	10	0										1							17.787	17.787	2	0.012747	13623	DP690-10	98.582	49.082			NaN	NaN	NaN	0	0	Median	15551000	15551000	0	11640	765	10839	22659	54892	54892		1	9606
QLGISATMLNASSSK	1	0	Unmodified	1506.7712	0.77119262	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	9	3.56				1							1	1					17.005	17.005	2	1.4238E-06	11739	DP690-12	179.6	140.89			0.95213	1.1311	26.476	3	0	Plateau	208810000	104680000	104130000	11641	751	10840	22660;22661;22662	54893;54894;54895;54896;54897;54898;54899;54900;54901	54895		9	9606
QLGISATMLNASSSK	1	0	Oxidation (M)	1522.7661	0.76610725	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	1	0	8.33	3.3				1					1			1					14.99	14.99	2	0.00045968	8440	DP690-9	113.69	89.184			0.77956	0.99213	NaN	1	0	Median	14719000	10649000	4069600	11642	751	10840	22663;22664;22665	54902;54903;54904;54905;54906;54907;54908;54909	54909	1111	8	9606
QLGITNVLSLFCAALTEHK	1	0	Unmodified	2114.1194	0.11941021	312	O95248	SBF1	Myotubularin-related protein 5	yes	yes	0	0	0	10	0										1							24.909	24.909	3	0.024862	23038	DP690-10	58.693	36.276			NaN	NaN	NaN	0	0	Median	1289000	1289000	0	11643	312	10841	22666	54910	54910		1	9606
QLIDEGIAPEEGGVDAK	1	0	Unmodified	1739.8578	0.85775902	1582	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	12	0												1					16.419	16.419	2	1.4112999999999998E-22	10957	DP690-12	234.87	190.26			0.69924	0.81127	NaN	1	0	Median	109280000	61455000	47820000	11644	1582	10842	22667	54911;54912;54913;54914	54911		4	9606
QLILEEIFTSLAR	0	1	Unmodified	1531.861	0.86099391	1476	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	10	0										2							25.729	25.729	2	0.00010851	23903	DP690-10	138.71	138.71			0.8297	1.0108	0.54424	2	0	Median	8864900	4500700	4364200	11645	1476	10843	22668;22669	54915;54916;54917;54918	54915		4	9606
QLIPIFTDVALK	1	0	Unmodified	1356.8017	0.80168812	2375	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	11	0											1						21.715	21.715	2	0.044457	18936	DP690-11	62.166	22.586			0.69767	0.85727	NaN	1	0	Median	19992000	11457000	8534300	11646	2375	10844	22670	54919	54919		1	9606
QLIVGVNK	1	0	Unmodified	869.53345	0.53345218	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	12.3	1.7										1			1	1			13.268	13.268	2	0.047014	6079	DP690-13	133.47	46.534			0.96692	0.9284	10.284	3	0	Plateau	10491000000	5268500000	5222200000	11647	1031;1118	10845	22671;22672;22673	54920;54921;54922	54921		0	9606
QLKPTASVKPVQMEK	3	0	Oxidation (M)	1698.9338	0.93384128	302	O95067	CCNB2	G2/mitotic-specific cyclin-B2	yes	yes	0	1	2	13	0													1				10.26	10.26	4	0.0072501	2478	DP690-13	67.095	42.686			0.58371	0.61145	NaN	1	0	Median	21010000	13278000	7731800	11648	302	10846	22674	54923;54924	54924	314	2	9606
QLKPWCWYCNR	1	1	Unmodified	1609.7282	0.72822237	184	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	1	12	0												1					16.66	16.66	3	0.028221	11355	DP690-12	57.348	44.61			0.82644	0.9586	NaN	1	0	Median	114170000	62931000	51244000	11649	184	10847	22675	54925	54925		1	9606
QLLADIIQFHPGDTLK	1	0	Unmodified	1807.9832	0.98323431	1575	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	0	10	0										1							20.307	20.307	3	0.0049044	17126	DP690-10	101.3	51.821			NaN	NaN	NaN	0	0	Median	0	0	0	11650	1575	10848	22676	54926	54926		1	9606
QLLAEESLPTTPFYFILGK	1	0	Unmodified	2166.1613	0.16125825	1605	Q8IWA0	WDR75	WD repeat-containing protein 75	yes	yes	0	0	0	9	0									1								24.771	24.771	2	0.00033919	20282	DP690-9	105.66	105.66			0.7351	0.86765	NaN	1	0	Median	1519400	871550	647850	11651	1605	10849	22677	54927;54928	54928		2	9606
QLLALDAVDPQGEEK	1	0	Unmodified	1624.8308	0.83081599	2382	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	yes	yes	0	0	0	13	0													1				18.39	18.39	2	0.00024786	13381	DP690-13	145.31	81.271			NaN	NaN	NaN	0	0	Median	20026000	20026000	0	11652	2382	10850	22678	54929;54930	54929		2	9606
QLLCTNEDVSSPASADQR	0	1	Unmodified	1989.9062	0.90618255	1494	Q6P4A7	SFXN4	Sideroflexin-4	yes	yes	0	0	0	14	0														3			14.644	14.644	2	2.4948E-50	8429	DP690-14	272.92	221.63			NaN	NaN	NaN	0	0	Median	0	0	0	11653	1494	10851	22679;22680;22681	54931;54932;54933	54932		3	9606
QLLDLPLDTDLENEK	1	0	Unmodified	1754.8938	0.89381018	171	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	3	0			1														20.91	20.91	2	0.0016921	16308	DP690-3	77.597	21.046			1.7545	1.8367	NaN	1	0	Median	3749800	1352500	2397200	11654	171	10852	22682	54934	54934		1	9606
QLLDSGLPSLLVR	0	1	Unmodified	1409.8242	0.82421447	2193	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	2	0		1															21.196	21.196	2	0.0040657	14854	DP690-2	86.898	86.898			1.229	1.257	NaN	1	0	Median	1358400	542410	815960	11655	2193	10853	22683	54935;54936;54937	54935		3	9606
QLLEEELAR	0	1	Unmodified	1099.5873	0.58733824	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	7	3.56		1							1	1							16.029	16.029	2	0.00028389	9826	DP690-9	160.63	44.38			0.81506	0.94684	14.747	3	0	Plateau	421220000	232530000	188690000	11656	1319	10854	22684;22685;22686	54938;54939;54940;54941;54942;54943;54944	54942		7	9606
QLLGCDVGSAITR	0	1	Unmodified	1388.7082	0.70819844	2560				yes	yes	0	0	0	15	0															1		13.83	13.83	2	0.0029929	7090	DP690-15	89.827	22.612	+		0.76436	0.88381	NaN	1	0	Median	13084000	7266200	5817800	11657	2560	10855	22687	54945;54946	54945		2	9606
QLLLQVESTTVATR	0	1	Unmodified	1557.8726	0.87262123	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	13	0													1				17.787	17.787	2	2.0172E-14	12536	DP690-13	227.37	227.37			0.88455	1.074	NaN	1	0	Median	52655000	26567000	26088000	11658	1597	10856	22688	54947;54948	54947		2	9606
QLLLTPNAVVIVEDAK	1	0	Unmodified	1721.9927	0.99273636	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						20.868	20.868	2	6.6785E-06	17797	DP690-11	130.1	117.12			0.78995	0.95558	NaN	1	0	Median	45134000	25395000	19738000	11659	65	10857	22689	54949;54950	54949		2	9606
QLLQANPILEAFGNAK	1	0	Unmodified	1725.9414	0.94136949	668;1543	P35579;Q7Z406	MYH9;MYH14	Myosin-9;Myosin-14	no	no	0	0	0	5.6	3.26		1	1	1					1	1							21.717	21.717	2	3.4533E-22	15465	DP690-2	245.13	245.13			0.98768	1.0682	8.6893	5	0	Median	107510000	53102000	54408000	11660	668;1543	10858	22690;22691;22692;22693;22694	54951;54952;54953;54954;54955;54956;54957;54958;54959;54960;54961;54962;54963;54964;54965;54966;54967;54968;54969;54970	54960		20	9606
QLLQLLTTYIVR	0	1	Unmodified	1459.8763	0.87625004	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	2	0		1															23.46	23.46	2	0.0016985	17089	DP690-2	98.044	55.695			1.0115	1.0334	NaN	1	0	Median	1004500	510580	493900	11661	1437	10859	22695	54971;54972	54971		2	9606
QLLSELDEEK	1	0	Unmodified	1202.603	0.60304789	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	13	0													1				16.114	16.114	2	0.00019227	10339	DP690-13	128.6	66.495			0.757	0.87456	NaN	1	0	Median	65810000	39344000	26465000	11662	1823	10860	22696	54973;54974	54973		2	9606
QLLSELDEEKK	2	0	Unmodified	1330.698	0.6980109	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	1	13	0													1				13.975	13.975	3	0.010064	7288	DP690-13	67.214	42.147			0.94982	1.0578	NaN	1	0	Median	105100000	56786000	48309000	11663	1823	10861	22697	54975;54976	54975		2	9606
QLLSNELLLTQMEK	1	0	Oxidation (M)	1674.8862	0.88622238	2158	Q9HAV4	XPO5	Exportin-5	yes	yes	0	1	0	3	0			1														18.49	18.49	2	0.026541	13271	DP690-3	71.268	32.308			1.1998	1.2653	NaN	1	0	Median	8313200	4102600	4210600	11664	2158	10862	22698	54977	54977	2645	1	9606
QLLSPGTALILLEAQAASGFLLDPVR	0	1	Unmodified	2692.5164	0.51635214	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.33	0.471									2	1							28.447	28.447	2;3	2.0367E-37	26524	DP690-10	213.69	208.67			0.6574	0.79029	14.398	2	0	Median	6884900	4352800	2532100	11665	1319	10863	22699;22700;22701	54978;54979;54980;54981;54982;54983;54984;54985;54986;54987;54988;54989;54990;54991	54981		14	9606
QLNLENVVGDK	1	0	Unmodified	1227.6459	0.64591575	196	O43929;CON__Q2YDI2	ORC4	Origin recognition complex subunit 4	yes	no	0	0	0	13	0													1				16.967	16.967	2	2.1465E-10	11456	DP690-13	176.33	80.416		+	NaN	NaN	NaN	0	0	Median	19888000	19888000	0	11666	196	10864	22702	54992	54992		1	9606
QLNNWAVYR	0	1	Unmodified	1162.5883	0.5883413	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							15.984	15.984	2	0.0031324	11059	DP690-10	107.32	65.03			0.63229	0.78553	NaN	1	0	Median	87350000	49486000	37864000	11667	13	10865	22703	54993;54994	54994		2	9606
QLNYTIGEVPISFVDR	0	1	Unmodified	1849.9574	0.95741349	220	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	7	0							1										21.044	21.044	2	0.0023993	15882	DP690-7	86.814	86.814			1.0574	1.2039	NaN	1	0	Median	4518800	2005600	2513200	11668	220	10866	22704	54995;54996	54996		2	9606
QLPALDGSLMGPESPPAQEEEAPVSPHKK	2	0	Unmodified	3038.5019	0.50190064	1669	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	1	14	0														1			9.9883	9.9883	6	0.068383	2231	DP690-14	25.327	4.5698			NaN	NaN	NaN	0	0	Median	5054800	5054800	0	11669	1669	10867	22705	54997	54997		1	9606
QLPLLTSALHGLQQQHPAFSGVAR	0	1	Unmodified	2568.3925	0.39248903	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	11	0											2						19.335	19.335	4	0.00052279	15726	DP690-11	99.414	71.489			NaN	NaN	NaN	0	0	Median	112740000	63360000	49384000	11670	2127	10868	22706;22707	54998;54999;55000;55001	55001		4	9606
QLPLVKPYLR	1	1	Unmodified	1225.7547	0.75467834	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	6	4		1								1							15.451	15.451	3	0.00018763	10106	DP690-10	119.62	106.11			0.9284	1.0159	31.423	2	0	Median	133270000	77155000	56113000	11671	1075	10869	22708;22709	55002;55003;55004;55005;55006;55007	55002		6	9606
QLPPFDMWK	1	0	Oxidation (M)	1176.5638	0.56376603	921	P60321	NANOS2	Nanos homolog 2	yes	yes	0	1	0	7	0							1										11.556	11.556	2	0.01091	4123	DP690-7	93.429	37.967			0.17476	0.1864	NaN	1	0	Median	88244000	74375000	13869000	11672	921	10870	22710	55008;55009	55008	1416	2	9606
QLPSGGLNGRPEK	1	1	Unmodified	1351.7208	0.72081203	876	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	1	6	0						1											10.694	10.694	3	0.0001315	3199	DP690-6	113.07	113.07			1.172	1.3134	NaN	1	0	Median	13110000	6111600	6998400	11673	876	10871	22711	55010;55011;55012;55013	55011		4	9606
QLQAESVSEVVVNR	0	1	Unmodified	1556.8158	0.81583463	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	11	0											1						16.005	16.005	2	0.0061528	10862	DP690-11	121.08	58.773			NaN	NaN	NaN	0	0	Median	0	0	0	11674	83	10872	22712	55014	55014		1	9606
QLQAETEPIVK	1	0	Unmodified	1254.682	0.68196691	920	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	13	0													1				13.537	13.537	2	0.00017575	6682	DP690-13	143.37	109.2			1.0432	1.1964	NaN	1	0	Median	94525000	41075000	53450000	11675	920	10873	22713	55015;55016;55017;55018	55016		4	9606
QLQAFMDESTQCFQK	1	0	Unmodified	1859.8182	0.81821917	2115	Q9H410	DSN1	Kinetochore-associated protein DSN1 homolog	yes	yes	0	0	0	14	0														1			17.646	17.646	2	0.00042235	12515	DP690-14	172.13	132.55			NaN	NaN	NaN	0	0	Median	0	0	0	11676	2115	10874	22714	55019	55019		1	9606
QLQATSVPHPVSR	0	1	Unmodified	1418.763	0.7630112	124	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	13	0													1				11.826	11.826	3	0.037904	4489	DP690-13	44.457	22.887			0.6303	0.77342	NaN	1	0	Median	29484000	18511000	10973000	11677	124	10875	22715	55020;55021	55021		2	9606
QLQESQTSGDVKVEEK	2	0	Unmodified	1803.885	0.88503641	1102	Q03001	DST	Dystonin	yes	yes	0	0	1	9	0									1								10.746	10.746	3	1.3642E-06	3115	DP690-9	138.01	99.204			0.8062	0.97017	NaN	1	0	Median	10129000	5326500	4802800	11678	1102	10876	22716	55022;55023	55022		2	9606
QLQLAQEAAQK	1	0	Unmodified	1226.6619	0.66190017	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							13.061	13.061	2	2.5512E-06	5891	DP690-9	233.57	178.03			0.86058	0.995	5.8411	2	0	Median	343750000	185040000	158710000	11679	1319	10877	22717;22718	55024;55025;55026;55027;55028;55029;55030	55030		7	9606
QLQLAQEAAQKR	1	1	Unmodified	1382.763	0.7630112	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								11.842	11.842	3	0.0005738	4330	DP690-9	90.913	90.913			0.76025	0.88175	NaN	1	0	Median	15448000	8937000	6511100	11680	1319	10878	22719	55031;55032;55033;55034	55031		4	9606
QLQLEAEEQR	0	1	Unmodified	1242.6204	0.62042929	1645	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	4	0				1													13.439	13.439	2	0.00016232	6506	DP690-4	133.57	46.62			0.56967	0.6614	NaN	1	0	Median	6383800	3772400	2611300	11681	1645	10879	22720	55035	55035		1	9606
QLQNISLAAASGGAK	1	0	Unmodified	1427.7732	0.77324153	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								15.116	15.116	2	1.4521E-05	8654	DP690-9	169.65	132.14			1.1067	1.2383	0.048603	2	0	Median	25359000	13148000	12211000	11682	1264	10880	22721;22722	55036;55037;55038;55039;55040;55041	55040		6	9606
QLQQAQAAGAEQEVEK	1	0	Unmodified	1726.8486	0.84859132	700	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	13	2.71									1	1			1	1		2	12.619	12.619	2	2.141E-48	5470	DP690-13	336.16	269.2			0.81565	0.92072	4.8176	3	0	Median	175820000	95174000	80641000	11683	700	10881	22723;22724;22725;22726;22727;22728	55042;55043;55044;55045;55046;55047;55048;55049;55050;55051;55052;55053;55054;55055;55056	55044		15	9606
QLQQAVTGISNAAQATASDDASQHQGGGGGELAYALNNFDK	1	0	Unmodified	4102.9217	0.92165628	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											1						20.035	20.035	3	1.4651999999999998E-21	16744	DP690-11	147.13	138.34			0.90639	1.1012	NaN	1	0	Median	38907000	17882000	21025000	11684	657	10882	22729	55057;55058;55059;55060;55061;55062;55063	55061		7	9606
QLQQLQEGTLQEYQK	1	0	Unmodified	1832.9268	0.92684164	2133	Q9H7L9	SUDS3	Sin3 histone deacetylase corepressor complex component SDS3	yes	yes	0	0	0	13	0													1				15.645	15.645	2	1.0819999999999999E-19	9687	DP690-13	284.28	226.4			0.81169	0.93911	NaN	1	0	Median	16378000	8263900	8114500	11685	2133	10883	22730	55064;55065	55064		2	9606
QLQVVPLFGDMQIELAR	0	1	Oxidation (M)	1972.0452	0.045182639	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	1	0	5.33	3.3			2							1							21.472	21.472	2	0.0013969	18705	DP690-10	94.547	94.547			0.77968	0.97128	NaN	1	0	Median	33040000	21774000	11265000	11686	1531;1849	10884	22731;22732;22733	55066;55067;55068;55069	55066	2213	4	9606
QLRPLLLDLLER	0	2	Unmodified	1477.898	0.89804812	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	1	9.5	0.5									1	1							21.359	21.359	3	7.4042E-05	16497	DP690-9	122.34	122.34			0.90521	1.0285	0.51139	2	0	Median	19115000	9875400	9239100	11687	2217	10885	22734;22735	55070;55071;55072	55072		3	9606
QLSAQSYGVTSSTAR	0	1	Unmodified	1554.7638	0.76379906	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	10	0										1							13.467	13.467	2	2.3791E-10	7274	DP690-10	210.95	186.68			0.86336	1.074	NaN	1	0	Median	81511000	42197000	39314000	11688	807	10886	22736	55073;55074;55075;55076	55076		4	9606
QLSDAISIIGR	0	1	Unmodified	1171.6561	0.65608651	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														18.418	18.418	2	0.033242	13055	DP690-3	90.108	29.198			NaN	NaN	NaN	0	0	Median	11423000	0	11423000	11689	892	10887	22737	55077;55078	55077		2	9606
QLSHPANFGPR	0	1	Unmodified	1222.6207	0.62070406	1051	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	yes	yes	0	0	0	15.5	0.5															1	1	11.014	11.014	3	0.0034718	3560	DP690-16	80.102	55.226			0.75404	0.87414	3.3983	2	0	Median	23130000	13058000	10072000	11690	1051	10888	22738;22739	55079;55080;55081;55082;55083	55081		5	9606
QLSLPQQEAQK	1	0	Unmodified	1268.6725	0.67246486	339	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	11	0											1						13.233	13.233	2	0.00053846	6788	DP690-11	112.3	80.661			0.5494	0.66949	NaN	1	0	Median	33172000	20680000	12492000	11691	339	10889	22740	55084;55085;55086	55085		3	9606
QLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLR	0	1	Oxidation (M)	3575.8042	0.80423067	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	1	0	14	0														1			21.434	21.434	3	3.613E-08	17423	DP690-14	100.79	86.522			0.90333	1.1199	NaN	1	0	Median	9781300	5166300	4615000	11692	348	10890	22741	55087;55088	55087	356	2	9606
QLSQNFLLDLR	0	1	Unmodified	1345.7354	0.73539946	1748	Q8WVM0	TFB1M	Dimethyladenosine transferase 1, mitochondrial	yes	yes	0	0	0	14	0														1			20.359	20.359	2	0.00079836	16117	DP690-14	108.43	64.006			0.89303	1.0908	NaN	1	0	Median	17217000	9611100	7605800	11693	1748	10891	22742	55089;55090;55091;55092	55089		4	9606
QLSQSLLPAIVELAEDAK	1	0	Unmodified	1924.0517	0.051707805	624	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	no	0	0	0	8	4				1								1					24.505	24.505	2	4.8256E-06	21069	DP690-12	149.32	138.59			0.95551	1.0832	65.491	2	0	Median	4790100	2550500	2239600	11694	624	10892	22743;22744	55093;55094;55095	55093		2	9606
QLSSEELEQFQK	1	0	Unmodified	1464.7096	0.70963822	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														16.03	16.03	2	0.00024046	10007	DP690-3	170.47	113.56			0.99469	1.0643	NaN	1	0	Median	23000000	10533000	12467000	11695	721	10893	22745	55096;55097	55097		2	9606
QLSSGVSEIR	0	1	Unmodified	1074.5669	0.56693715	374	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	11	4							1								1		12.909	12.909	2	4.4165E-05	5687	DP690-7	172.25	100.11			1.0622	1.1901	13.912	2	0	Median	121450000	59968000	61483000	11696	374	10894	22746;22747	55098;55099;55100;55101;55102;55103;55104	55104		7	9606
QLSSSVTGLTNIEEENCQR	0	1	Unmodified	2164.0066	0.0066248805	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	4.67	3.77		2								1							16.872	16.872	2	3.1333000000000003E-30	12271	DP690-10	244	209.82			0.43392	0.54172	NaN	1	0	Median	29386000	19143000	10243000	11697	766	10895	22748;22749;22750	55105;55106;55107;55108	55105		4	9606
QLTANTGHTIHVHYPGNR	0	1	Unmodified	2015.0086	0.008554632	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															11.746	11.746	4	0.00048501	3915	DP690-2	84.508	69.3			1.1109	1.162	NaN	1	0	Median	8188000	3225400	4962600	11698	1555	10896	22751	55109;55110;55111;55112	55110		4	9606
QLTCTEEMAQR	0	1	Unmodified	1365.6017	0.60168445	1339	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	yes	yes	0	0	0	14	0														1			12.278	12.278	2	9.0952E-05	5137	DP690-14	155.84	118.34			0.99284	1.2076	NaN	1	0	Median	19648000	11172000	8475600	11699	1339	10897	22752	55113;55114;55115	55115		3	9606
QLTLEQLHAVEISAVHSR	0	1	Unmodified	2030.0909	0.090887278	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	0	12.7	3.3								1							2		16.873	16.873	3;4	0.00022953	11229	DP690-15	92.236	72.974			0.8477	0.92643	48.619	3	0	Median	175250000	86148000	89104000	11700	1983	10898	22753;22754;22755	55116;55117;55118;55119;55120;55121;55122	55118		7	9606
QLTLSGIYAHITK	1	0	Unmodified	1443.8086	0.80856441	1065	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	3	0			1														17.992	17.992	3	0.081462	12648	DP690-3	38.028	28.708			0.95836	1.0213	NaN	1	0	Median	12714000	6850500	5863900	11701	1065	10899	22756	55123	55123		1	9606
QLTQPETHFGR	0	1	Unmodified	1312.6524	0.65239812	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	9.67	4.03				1								1	1				12.1	12.1	3	0.00068186	4992	DP690-12	93.561	78.744			0.86902	1.0146	16.561	3	0	Median	166190000	87624000	78570000	11702	2361	10900	22757;22758;22759	55124;55125;55126;55127;55128;55129;55130;55131;55132	55127		9	9606
QLTSYVGSVRPLVTELDPDAPIR	0	2	Unmodified	2525.349	0.34895246	912	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	1	11	0											1						20.152	20.152	3	0.00053901	16793	DP690-11	77.959	66.337			0.6765	0.83393	NaN	1	0	Median	41350000	24708000	16642000	11703	912	10901	22760	55133	55133		1	9606
QLTVLSDQQK	1	0	Unmodified	1158.6245	0.62445203	182	O43592	XPOT	Exportin-T	yes	yes	0	0	0	3	0			1														13.452	13.452	2	0.00063119	6613	DP690-3	114.89	32.144			1.0329	1.097	NaN	1	0	Median	30666000	15080000	15586000	11704	182	10902	22761	55134;55135;55136;55137	55136		4	9606
QLTVQMMQNPQILAALQER	0	1	2 Oxidation (M)	2243.1402	0.14022201	896	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	2	0	4	0				1													18.527	18.527	2	7.6424E-23	13000	DP690-4	226.88	226.88			0.97626	1.136	NaN	1	0	Median	8938200	4630200	4307900	11705	896	10903	22762	55138;55139;55140;55141;55142;55143	55141	1379;1380	6	9606
QLTVTQQSQEEVAR	0	1	Unmodified	1615.8166	0.81656291	237	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	11	0											1						13.002	13.002	2	0.071404	6522	DP690-11	81.525	39.314			NaN	NaN	NaN	0	0	Median	8159900	8159900	0	11706	237	10904	22763	55144	55144		1	9606
QLVDTTVELANK	1	0	Unmodified	1329.714	0.71399532	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	10	0										1							15.849	15.849	2	0.00024027	10815	DP690-10	162.36	105.18			0.66429	0.82049	NaN	1	0	Median	140430000	74326000	66104000	11707	263	10905	22764	55145;55146	55146		2	9606
QLVHELDEAEYR	0	1	Unmodified	1500.7209	0.72087161	1124	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	7	0							1										14.207	14.207	3	1.86E-05	7356	DP690-7	132.86	111.23			0.74866	0.76655	NaN	1	0	Median	400290000	228730000	171560000	11708	1124	10906	22765	55147;55148;55149;55150	55149		4	9606
QLVLETLYALTSSTK	1	0	Unmodified	1665.9189	0.91890272	241	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	10	0										1							23.077	23.077	2	5.1728E-06	20786	DP690-10	176.32	141.14			0.8369	1.0157	NaN	1	0	Median	15757000	8145600	7611800	11709	241	10907	22766	55151;55152;55153;55154	55151		4	9606
QLVTSMDVTETNVFFYPR	0	1	Oxidation (M)	2162.0354	0.035405813	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	1	0	8.33	3.77			1								2						20.256	20.256	2	2.6084E-11	15454	DP690-3	175.21	137.61			0.82077	0.92621	NaN	1	0	Median	17366000	4958700	12407000	11710	883	10908	22767;22768;22769	55155;55156;55157;55158;55159	55158	1342	5	9606
QLVTSMDVTETNVFFYPR	0	1	Unmodified	2146.0405	0.040491191	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	11	0											1						21.532	21.532	2	3.6286E-05	18682	DP690-11	177.36	103.48			NaN	NaN	NaN	0	0	Median	9626700	9626700	0	11711	883	10908	22770	55160;55161	55160		2	9606
QLWGLLIEETEKR	1	1	Unmodified	1613.8777	0.8777066	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							19.83	19.83	3	0.053479	16589	DP690-10	43.405	7.5134			0.93093	1.1586	NaN	1	0	Median	36247000	17223000	19024000	11712	1080	10909	22771	55162	55162		1	9606
QLYEPLVMQLIHWFTNNK	1	0	Unmodified	2273.1667	0.16669476	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	10	0										1							26.358	26.358	3	0.010108	24650	DP690-10	57.173	57.173			0.37573	0.43316	NaN	1	0	Median	1498300	749630	748670	11713	1046	10910	22772	55163;55164	55163		2	9606
QLYEPLVMQLIHWFTNNK	1	0	Oxidation (M)	2289.1616	0.16160938	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									2								25.374	25.374	3	0.001016	20912	DP690-9	79.326	66.006			0.67525	0.83385	21.955	2	0	Median	9063000	5227300	3835600	11714	1046	10910	22773;22774	55165;55166;55167;55168;55169	55165	1633	5	9606
QLYEPLVMQLIHWFTNNKK	2	0	Oxidation (M)	2417.2566	0.2565724	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	9	0									1								23.595	23.595	4	6.7912E-05	19056	DP690-9	107.62	92.534			0.69033	0.8468	NaN	1	0	Median	4838600	2819400	2019200	11715	1046	10911	22775	55170;55171	55171	1633	2	9606
QLYETTDTTTR	0	1	Unmodified	1327.6256	0.62557424	2355	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	3	0			1														12.211	12.211	2	0.037242	4928	DP690-3	91.636	63.238			NaN	NaN	NaN	0	0	Median	0	0	0	11716	2355	10912	22776	55172	55172		1	9606
QLYHLGVVEAYSGLTK	1	0	Unmodified	1776.941	0.94103514	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	9.5	0.5									1	1							17.747	17.747	3	0.0005571	13537	DP690-10	95.873	48.252			1.1157	1.4264	NaN	1	0	Median	107410000	100030000	7376400	11717	1137	10913	22777;22778	55173;55174;55175	55174		3	9606
QLYLPMLFK	1	0	Oxidation (M)	1167.6362	0.63620269	128	O14980	XPO1	Exportin-1	yes	yes	0	1	0	3	0			1														20.679	20.679	2	0.041876	15899	DP690-3	75.189	75.189			1.0529	1.1249	NaN	1	0	Median	13808000	6960000	6848300	11718	128	10914	22779	55176;55177	55176	144	2	9606
QLYQTLTDYDIR	0	1	Unmodified	1527.7569	0.75692277	1035	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	14	0														1			18.307	18.307	2	0.00027199	13453	DP690-14	148.32	64.108			NaN	NaN	NaN	0	0	Median	21356000	0	21356000	11719	1035	10915	22780	55178	55178		1	9606
QMAAEEAMK	1	0	Unmodified	1007.4416	0.44160198	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						11.283	11.283	2	0.059782	3984	DP690-11	64.42	20.304			0.80051	0.97118	NaN	1	0	Median	75318000	43429000	31889000	11720	897	10916	22781	55179	55179		1	9606
QMAGCLEDCTR	0	1	Oxidation (M)	1355.5268	0.52680495	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	1	0	11	0											1						11.153	11.153	2	0.044586	3776	DP690-11	87.298	27.872			NaN	NaN	NaN	0	0	Median	0	0	0	11721	83	10917	22782	55180	55180		1	9606
QMEDGHTLFDYEVR	0	1	Unmodified	1738.7621	0.7620845	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	11	0											1						16.987	16.987	3	0.086038	12300	DP690-11	35.891	26.589			0.79795	0.9566	NaN	1	0	Median	58426000	33490000	24936000	11722	1932	10918	22783	55181	55181		1	9606
QMEDKVSQLEMELEEER	1	1	2 Oxidation (M)	2153.9457	0.94566411	1149	Q0VF96	CGNL1	Cingulin-like protein 1	yes	yes	0	2	1	5	0					1												10.255	10.255	5	0.038714	2638	DP690-5	42.947	36.824			43.878	47.04	NaN	1	0	Median	278290000	7050300	271240000	11723	1149	10919	22784	55182	55182	1801;1802	1	9606
QMEKDETVSDCSPHIANIGR	1	1	Oxidation (M)	2302.0318	0.031793774	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	1	1	10.4	3.9						2	2							3	1		12.857	12.857	3;4	1.2036E-14	5872	DP690-14	192.24	178.26			0.75638	0.827	9.0338	7	0	Median	745390000	420830000	324560000	11724	769	10920	22785;22786;22787;22788;22789;22790;22791;22792	55183;55184;55185;55186;55187;55188;55189;55190;55191;55192;55193;55194;55195;55196;55197;55198;55199;55200;55201;55202;55203	55190	1146	20	9606
QMEKDETVSDCSPHIANIGR	1	1	Unmodified	2286.0369	0.036879151	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	1	11.7	3.3							1							2			13.238	13.238	3;4	1.4493E-06	6444	DP690-14	127.91	114.92			0.76292	0.91408	8.4776	3	0	Median	392490000	213470000	179030000	11725	769	10920	22793;22794;22795	55204;55205;55206;55207;55208;55209;55210;55211;55212;55213	55209		10	9606
QMEQISQFLQAAER	0	1	Oxidation (M)	1693.8094	0.80936904	690	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	10.8	3.87							1	2							1	1	18.97	18.97	2	7.1092E-15	13304	DP690-7	237.68	198.05			0.98655	1.1229	3.2693	2	0	Median	59772000	31691000	28081000	11726	690	10921	22796;22797;22798;22799;22800	55214;55215;55216;55217;55218;55219;55220;55221;55222;55223;55224	55222	997	11	9606
QMFEPVSCTFTYLLGDR	0	1	Oxidation (M)	2078.9441	0.94414797	330	O95571	ETHE1	Persulfide dioxygenase ETHE1, mitochondrial	yes	yes	0	1	0	7	0							3										22.303	22.303	2	0.00039054	17310	DP690-7	136.99	100.54			NaN	NaN	NaN	0	0	Median	1532000	1532000	0	11727	330	10922	22801;22802;22803	55225;55226;55227;55228	55225	343	4	9606
QMFLTQTDTGDDR	0	1	Oxidation (M)	1542.662	0.6620361	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.33	0.471									2	1							14.525	14.525	2	8.5133E-06	6979	DP690-9	192.12	173.01			0.78378	0.97207	11.387	3	0	Plateau	188310000	92749000	95562000	11728	1046	10923	22804;22805;22806	55229;55230;55231;55232;55233;55234;55235;55236	55235	1634	8	9606
QMFLTQTDTGDDR	0	1	Unmodified	1526.6671	0.66712148	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							15.7	15.7	2	3.273E-09	9379	DP690-9	212.28	177.1			0.86866	1.0635	4.1358	2	0	Median	86881000	48591000	38290000	11729	1046	10923	22807;22808	55237;55238;55239;55240;55241;55242;55243;55244;55245	55245		9	9606
QMLDHFQATPHHGVYSR	0	1	Oxidation (M)	2038.9432	0.94317718	1564	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	1	0	3	0			1														10.844	10.844	5	0.067656	3264	DP690-3	50.376	30.009			NaN	NaN	NaN	0	0	Median	12711000	0	12711000	11730	1564	10924	22809	55246;55247	55247		2	9606
QMLFDLESAYNAFNR	0	1	Oxidation (M)	1833.8356	0.83558379	2366	Q9UK41	VPS28	Vacuolar protein sorting-associated protein 28 homolog	yes	yes	0	1	0	7	0							1										21.676	21.676	2	2.4251E-05	16559	DP690-7	169.58	133.05			0.69988	0.81086	NaN	1	0	Median	10835000	6138800	4696700	11731	2366	10925	22810	55248;55249	55249	2801	2	9606
QMQLENVSVALEFLDR	0	1	Oxidation (M)	1906.9459	0.94586252	549;250	P21333;O75369	FLNA;FLNB	Filamin-A;Filamin-B	no	no	0	1	0	8.25	3.63		1								2	1						22.296	22.296	2	5.5467E-12	19685	DP690-10	202.29	202.29			1.0344	1.294	NaN	1	0	Median	56193000	37641000	18552000	11732	549;250	10926	22811;22812;22813;22814	55250;55251;55252;55253;55254;55255	55250	248	6	9606
QMQLENVSVALEFLDR	0	1	Unmodified	1890.9509	0.9509479	549;250	P21333;O75369	FLNA;FLNB	Filamin-A;Filamin-B	no	no	0	0	0	10	0										3							23.3	23.3	2	1.0053E-05	21121	DP690-10	158.11	88.766			NaN	NaN	NaN	0	0	Median	17591000	10670000	6920200	11733	549;250	10926	22815;22816;22817	55256;55257;55258;55259	55259		4	9606
QMQLENVSVALEFLDRESIK	1	1	Oxidation (M)	2364.1995	0.19951103	549;250	P21333;O75369	FLNA;FLNB	Filamin-A;Filamin-B	no	no	0	1	1	10.2	0.829									1	1	2						21.292	21.292	3	0.00020688	18594	DP690-10	96.805	78.747			0.82189	0.99171	NaN	1	0	Median	201220000	114400000	86824000	11734	549;250	10927	22818;22819;22820;22821	55260;55261;55262;55263;55264;55265;55266;55267	55260	248	8	9606
QMQLENVSVALEFLDRESIK	1	1	Unmodified	2348.2046	0.20459641	549;250	P21333;O75369	FLNA;FLNB	Filamin-A;Filamin-B	no	no	0	0	1	10.3	0.471										2	1						22.23	22.23	3	6.6259E-15	19743	DP690-10	191.41	165.07			0.70629	0.88497	NaN	1	0	Median	67545000	42788000	24758000	11735	549;250	10927	22822;22823;22824	55268;55269;55270;55271;55272;55273;55274	55271		7	9606
QMQSSFTSSEQELER	0	1	Unmodified	1785.7839	0.78394215	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	10	0										2							15.298	15.298	2	0.0097725	10030	DP690-10	120.57	88.934			0.78835	0.98469	NaN	1	0	Median	29808000	17311000	12497000	11736	1570	10928	22825;22826	55275;55276	55276		2	9606
QMREMEENFAVEAANYQDTIGR	0	2	2 Oxidation (M)	2633.1486	0.14861445	424	P08670	VIM	Vimentin	yes	yes	0	2	1	13	0													1				16.8	16.8	3	8.0829E-05	11272	DP690-13	110.75	93.88			0.99099	1.1379	NaN	1	0	Median	28308000	12604000	15705000	11737	424	10929	22827	55277;55278	55277	482;488	2	9606
QMSLCGTPEK	1	0	Oxidation (M)	1165.5107	0.51074418	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	1	0	2	0		1															10.513	10.513	2	0.053971	2613	DP690-2	70.056	33.5			0.88006	0.88786	NaN	1	0	Median	14428000	7602300	6825600	11738	2418	10930	22828	55279	55279		1	9606
QMSVPGIFNPHEIPEEMCD	0	0	2 Oxidation (M)	2260.9439	0.94388997	128	O14980	XPO1	Exportin-1	yes	yes	0	2	0	3	0			1														18.375	18.375	2	0.0010611	13019	DP690-3	107.46	84.58			NaN	NaN	NaN	0	0	Median	0	0	0	11739	128	10931	22829	55280;55281	55280	145;146	2	9606
QMVNEDEENQDTAK	1	0	Unmodified	1649.6839	0.68389376	1151	Q0ZGT2	NEXN	Nexilin	yes	yes	0	0	0	11	0											1						10.852	10.852	2	9.0357E-14	3383	DP690-11	214.82	197.08			0.75014	0.926	NaN	1	0	Median	17165000	9217000	7948100	11740	1151	10932	22830	55282;55283;55284	55282		3	9606
QNADPQAVTMPATETK	1	0	Oxidation (M)	1716.7989	0.79886394	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	1	0	4	0				1													11.721	11.721	2	1.8354E-07	4256	DP690-4	175.21	117.43			0.73917	0.80158	NaN	1	0	Median	9030000	4871000	4159000	11741	2405	10933	22831	55285;55286;55287;55288	55286	2828	4	9606
QNADPQAVTMPATETKK	2	0	Oxidation (M)	1844.8938	0.89382695	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	1	1	4	0				1													10.447	10.447	3	0.00065205	2797	DP690-4	81.346	12.057			0.67319	0.70139	NaN	1	0	Median	43389000	25616000	17773000	11742	2405	10934	22832	55289	55289	2828	1	9606
QNHLFEQYR	0	1	Unmodified	1233.5891	0.58906958	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			2														12.957	12.957	2;3	0.00059373	5875	DP690-3	117.81	102.61			0.89694	0.99026	6.933	2	0	Median	81183000	42220000	38964000	11743	797	10935	22833;22834	55290;55291;55292;55293;55294;55295;55296;55297	55291		8	9606
QNLDALLNQLK	1	0	Unmodified	1268.7089	0.70885036	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								20.151	20.151	2	2.2479E-06	15035	DP690-9	216.12	156.06			0.80052	0.90376	4.1687	2	0	Median	17806000	9924500	7881800	11744	1264	10936	22835;22836	55298;55299;55300;55301;55302;55303;55304	55303		7	9606
QNLEPLFEQYINNLR	0	1	Unmodified	1889.9636	0.9635615	43;31;368	CON__P02538;P02538;CON__P48668;P48668;CON__P13647;P13647;P04259	KRT6A;KRT6C;KRT5;KRT6B	Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6B	no	no	0	0	0	9	6.16	1									1						1	22.981	22.981	2	0.00021779	17805	DP690-16	168.3	98.63		+	NaN	NaN	NaN	0	0	Median	15001000	15001000	0	11745	31;43;368	10937	22837;22838;22839	55305;55306;55307;55308	55307		4	9606
QNLEPLFEQYINNLRR	0	2	Unmodified	2046.0647	0.064672527	43;31;368	CON__P02538;P02538;CON__P48668;P48668;CON__P13647;P13647;P04259	KRT6A;KRT6C;KRT5;KRT6B	Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6B	no	no	0	0	1	16	0																1	21.24	21.24	3	0.00049585	16035	DP690-16	127.02	83.425		+	NaN	NaN	NaN	0	0	Median	12554000	12554000	0	11746	31;43;368	10938	22840	55309;55310;55311	55311		3	9606
QNLFQEAEEFLYR	0	1	Unmodified	1685.8049	0.80493559	2384	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	7	0							1										24.493	24.493	2	4.3401E-08	19765	DP690-7	198.25	173.97			0.7776	0.88564	NaN	1	0	Median	22470000	13162000	9307600	11747	2384	10939	22841	55312;55313;55314;55315	55312		4	9606
QNLFTTWSHHLQQANIQFR	0	1	Unmodified	2368.1825	0.18249625	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								18.965	18.965	4	0.012256	13613	DP690-9	54.073	35.918			0.84087	1.0503	NaN	1	0	Median	12421000	5830700	6590500	11748	1264	10940	22842	55316	55316		1	9606
QNLLSQSHAYQQFLR	0	1	Unmodified	1831.9329	0.93293007	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							17.186	17.186	3	0.00099098	12753	DP690-10	90.229	71.555			0.83757	1.013	NaN	1	0	Median	181280000	94081000	87204000	11749	1080	10941	22843	55317	55317		1	9606
QNLQSFPEPLIIPVLYLTSLTHR	0	1	Unmodified	2678.4796	0.4795727	2200	Q9NRL2	BAZ1A	Bromodomain adjacent to zinc finger domain protein 1A	yes	yes	0	0	0	10	0										1							26.022	26.022	3	0.00032954	24282	DP690-10	95.622	95.622			0.90298	1.0681	NaN	1	0	Median	2107400	1051200	1056200	11750	2200	10942	22844	55318;55319	55319		2	9606
QNLYDLDEDDDGIASVPTK	1	0	Unmodified	2106.9593	0.95932356	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	13	0													1				18.502	18.502	2	2.0993E-13	13429	DP690-13	188.4	160.54			0.81914	0.93493	NaN	1	0	Median	107040000	57508000	49531000	11751	2045	10943	22845	55320;55321;55322;55323;55324	55322		5	9606
QNPQSPPQDSSVTSK	1	0	Unmodified	1598.7536	0.7536283	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	3.75	1.48		1	1	1		1											10.437	10.437	2	8.1673E-10	2641	DP690-3	205.02	132.93			0.56369	0.56374	16.698	4	0	Median	443270000	315550000	127710000	11752	2316	10944	22846;22847;22848;22849	55325;55326;55327;55328;55329;55330;55331;55332;55333;55334;55335	55327		11	9606
QNPQSPPQDSSVTSKR	1	1	Unmodified	1754.8547	0.85473933	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	1	3	0			3														10.307	10.307	3	9.8122E-10	2516	DP690-3	191.19	149.79			0.7665	0.85011	NaN	1	0	Median	68445000	31104000	37341000	11753	2316	10945	22850;22851;22852	55336;55337;55338;55339	55337		4	9606
QNQTTAISTPASSEISK	1	0	Unmodified	1761.8745	0.87447172	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.25	0.433									3	1							13.497	13.497	2	1.4373E-17	7317	DP690-10	213.67	145.01			0.8467	1.0655	45.331	2	0	Median	86180000	47463000	38717000	11754	808	10946	22853;22854;22855;22856	55340;55341;55342;55343;55344;55345;55346;55347	55343		8	9606
QNQTTSAVSTPASSETSK	1	0	Unmodified	1822.8545	0.85446456	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	no	0	0	0	11.2	3.16		1							1	1	2	3	1	3			10.699	10.699	2	2.5402E-59	3342	DP690-10	340.92	276.28			0.79068	0.95185	27.815	4	0	Median	267950000	153530000	114430000	11755	808	10947	22857;22858;22859;22860;22861;22862;22863;22864;22865;22866;22867;22868	55348;55349;55350;55351;55352;55353;55354;55355;55356;55357;55358;55359;55360;55361;55362;55363;55364;55365;55366	55351		19	9606
QNSVQEQPGTACLSK	1	0	Unmodified	1645.773	0.77298354	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.7	0.943									1	1	3	1					12.019	12.019	2	2.0068000000000002E-24	5041	DP690-11	300.98	247.23			0.80183	0.97555	26.14	4	0	Median	257260000	154990000	102280000	11756	2190	10948	22869;22870;22871;22872;22873;22874	55367;55368;55369;55370;55371;55372;55373;55374;55375;55376;55377;55378;55379;55380;55381;55382;55383	55374		17	9606
QPAEHLQLLEEAAK	1	0	Unmodified	1575.8257	0.82567103	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	6.5	3.57			2						1		1						15.384	15.384	2;3	9.0843E-05	9102	DP690-3	113.76	73.241			0.73027	0.79935	4.3403	3	0	Median	389990000	338850000	51133000	11757	652	10949	22875;22876;22877;22878	55384;55385;55386;55387;55388;55389;55390;55391;55392;55393;55394;55395;55396;55397;55398;55399	55392		16	9606
QPAENVNQYLTDPK	1	0	Unmodified	1615.7842	0.78420015	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														15.448	15.448	2	6.9436E-05	9211	DP690-3	142.19	114.55			0.95066	1.0086	NaN	1	0	Median	31900000	16766000	15134000	11758	561	10950	22879	55400;55401;55402;55403;55404	55400		5	9606
QPAIISQLDPVNER	0	1	Unmodified	1578.8366	0.83657007	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	10	0										1							17.857	17.857	2	0.0042192	13647	DP690-10	120.77	80.043			NaN	NaN	NaN	0	0	Median	80933000	80933000	0	11759	1137	10951	22880	55405;55406	55405		2	9606
QPAIMPGQSYGLEDGSCSYK	1	0	Oxidation (M)	2202.9562	0.95616921	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	1	0	12	0												1					15.683	15.683	2	1.2473E-31	9919	DP690-12	255.85	240.75			0.74616	0.89002	NaN	1	0	Median	62391000	34924000	27467000	11760	494	10952	22881	55407;55408;55409;55410;55411	55410	626	5	9606
QPAIMPGQSYGLEDGSCSYK	1	0	Unmodified	2186.9613	0.96125459	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	12	0												1					16.876	16.876	2	7.0524E-23	11604	DP690-12	214.48	197.08			0.794	0.94647	NaN	1	0	Median	52782000	29137000	23645000	11761	494	10952	22882	55412;55413;55414;55415	55414		4	9606
QPAIMPGQSYGLEDGSCSYKDFSESR	1	1	Unmodified	2908.2644	0.26437248	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	1	12	0												1					17.319	17.319	3	1.5502E-11	12253	DP690-12	160.25	147.33			0.54959	0.69171	NaN	1	0	Median	40716000	23892000	16824000	11762	494	10953	22883	55416;55417;55418;55419	55416		4	9606
QPAIMPGQSYGLEDGSCSYKDFSESR	1	1	Oxidation (M)	2924.2593	0.25928711	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	1	1	12	0												1					16.443	16.443	3	1.1935E-16	11133	DP690-12	173.81	161.84			NaN	NaN	NaN	0	0	Median	24260000	0	24260000	11763	494	10953	22884	55420;55421	55421	626	2	9606
QPAPMSTVLYNR	0	1	Oxidation (M)	1391.6867	0.68673471	1919	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	1	0	4	0				1													13.235	13.235	2	0.0019966	6169	DP690-4	103.26	84.987			1.1546	1.3424	NaN	1	0	Median	7453900	3487000	3966900	11764	1919	10954	22885	55422;55423;55424;55425	55423	2454	4	9606
QPAPTTIGGLNK	1	0	Unmodified	1195.6561	0.65608651	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	7	3.74		1	1						1	1	1						13.244	13.244	2	0.0001054	6840	DP690-10	163.38	114.29			0.74725	0.81029	14.611	4	0	Median	801390000	458770000	342620000	11765	604	10955	22886;22887;22888;22889;22890	55426;55427;55428;55429;55430;55431;55432;55433;55434;55435;55436	55427		11	9606
QPDPDENKPMEDKVK	3	0	Oxidation (M)	1784.8251	0.82507869	545	P20810	CAST	Calpastatin	yes	yes	0	1	2	3	0			1														10.185	10.185	4	0.0044947	2318	DP690-3	71.513	71.513			0.50456	0.52343	NaN	1	0	Median	2441900	1958700	483220	11766	545	10956	22891	55437;55438	55438	700	2	9606
QPDSGISSIR	0	1	Unmodified	1058.5356	0.53563702	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												1					12.6	12.6	2	0.032417	5466	DP690-12	70.1	32.592			0.73036	0.81921	NaN	1	0	Median	224770000	125740000	99025000	11767	375	10957	22892	55439;55440;55441	55440		3	9606
QPELPEVIAMLGFR	0	1	Unmodified	1598.849	0.84904901	216	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	11	0											1						24.563	24.563	2	8.437E-05	22414	DP690-11	160.67	160.67			0.97728	1.1998	NaN	1	0	Median	5721400	3746600	1974900	11768	216	10958	22893	55442;55443	55443		2	9606
QPGNETADTVLK	1	0	Unmodified	1271.6357	0.635745	952	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	0	0	7	0							1										12.708	12.708	2	0.024152	5492	DP690-7	87.806	45.208			0.70643	0.77165	NaN	1	0	Median	14406000	8061600	6344500	11769	952	10959	22894	55444;55445	55445		2	9606
QPIELLSMKR	1	1	Oxidation (M)	1229.6802	0.68019277	280	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	1	1	10	0										1							13.547	13.547	3	0.050841	7459	DP690-10	43.958	6.3445			0.77576	0.87162	NaN	1	0	Median	414200000	235820000	178380000	11770	280	10960	22895	55446	55446		1	9606
QPLALNVAYR	0	1	Unmodified	1143.64	0.64004252	1169	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	14	0														1			16.201	16.201	2	4.7609E-05	10491	DP690-14	171.38	153.16			0.82365	0.98963	NaN	1	0	Median	81191000	41468000	39724000	11771	1169	10961	22896	55447;55448	55448		2	9606
QPLPSAPENNPEEELASK	1	0	Unmodified	1948.9378	0.93780026	124	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	13	0													1				15.839	15.839	2	0.036541	9931	DP690-13	94.09	57.136			NaN	NaN	NaN	0	0	Median	0	0	0	11772	124	10962	22897	55449	55449		1	9606
QPLSEASNQQPLSGGEEK	1	0	Unmodified	1897.9017	0.9017491	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.2	0.829									1	1	2						13.147	13.147	2	1.0562E-38	6721	DP690-11	253.97	186.75			0.73987	0.91366	NaN	1	0	Median	134880000	78264000	56613000	11773	2190	10963	22898;22899;22900;22901	55450;55451;55452;55453;55454;55455	55453		6	9606
QPMETTQPGVSQSN	0	0	Oxidation (M)	1518.662	0.6620361	1579	Q86VY4	TSPYL5	Testis-specific Y-encoded-like protein 5	yes	yes	0	1	0	13	0													1				11.02	11.02	2	0.00028927	3423	DP690-13	141.91	111.34			NaN	NaN	NaN	0	0	Median	0	0	0	11774	1579	10964	22902	55456;55457	55456	2245	2	9606
QPNEGSSSQEEEGPSTSPDAESLFR	0	1	Unmodified	2664.1423	0.14232632	739	P43358	MAGEA4	Melanoma-associated antigen 4	yes	yes	0	0	0	10	4						1								1			16.989	16.989	2	3.0757E-15	10415	DP690-6	164.41	151.88			0.731	0.83873	NaN	1	0	Median	17702000	14281000	3420900	11775	739	10965	22903;22904	55458;55459;55460;55461;55462;55463	55459		6	9606
QPNPPLILQR	0	1	Unmodified	1174.6822	0.68224168	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															15.432	15.432	2	0.041234	8326	DP690-2	67.169	44.64			0.97753	1.0055	NaN	1	0	Median	3765900	1773700	1992200	11776	1555	10966	22905	55464	55464		1	9606
QPPDVTENPYRK	1	1	Unmodified	1442.7154	0.7153923	1464	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	1	12	0												1					11.459	11.459	3	0.0025314	4041	DP690-12	64.945	23.385			0.70467	0.89695	NaN	1	0	Median	19988000	9800300	10187000	11777	1464	10967	22906	55465;55466	55466		2	9606
QPSQGPTFGIK	1	0	Unmodified	1158.6033	0.60332266	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7	4			1								1						14.084	14.084	2	7.7006E-05	7347	DP690-3	128.28	78.863			0.77574	0.82532	5.6304	2	0	Median	412980000	229340000	183640000	11778	470	10968	22907;22908	55467;55468;55469;55470;55471	55471		5	9606
QPSSPSGEGDGGELSPQGVSK	1	0	Unmodified	1998.913	0.91304207	1289	Q14699	RFTN1	Raftlin	yes	yes	0	0	0	11	0											1						13.155	13.155	2	0.0013776	6654	DP690-11	131.86	108.03			NaN	NaN	NaN	0	0	Median	0	0	0	11779	1289	10969	22909	55472	55472		1	9606
QPTPVQLGCIPAILEGR	0	1	Unmodified	1847.9928	0.99275314	2525	Q9Y6V7	DDX49	Probable ATP-dependent RNA helicase DDX49	yes	yes	0	0	0	13	0													1				21.479	21.479	2	6.4987E-08	17347	DP690-13	173.59	142.12			0.6726	0.8189	NaN	1	0	Median	10878000	6846000	4032500	11780	2525	10970	22910	55473;55474;55475;55476	55475		4	9606
QPTSEANCSAMFGK	1	0	Oxidation (M)	1542.6443	0.64427755	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	1	0	10	0										1							11.552	11.552	2	0.0019762	4516	DP690-10	98.156	84.648			0.95623	1.1646	NaN	1	0	Median	20843000	10311000	10532000	11781	1377	10971	22911	55477;55478;55479	55477	2124	3	9606
QPTVTSVCSETSQELAEGQR	0	1	Unmodified	2206.0172	0.017189567	1869	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	12	0												1					15.806	15.806	2	7.8517E-12	10141	DP690-12	168	168			1.0229	1.2247	NaN	1	0	Median	25606000	11140000	14466000	11782	1869	10972	22912	55480	55480		1	9606
QPVDPQLLGIPDYFDIVK	1	0	Unmodified	2056.0881	0.088093311	1144;1790	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	0	0	0	10	0										1							23.695	23.695	2	0.058801	21567	DP690-10	88.224	60.019			NaN	NaN	NaN	0	0	Median	0	0	0	11783	1144;1790	10973	22913	55481	55481		1	9606
QPVYDTTIR	0	1	Unmodified	1091.5611	0.56112349	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								13.583	13.583	2	0.080799	6649	DP690-9	58.23	37.283			0.50213	0.62723	NaN	1	0	Median	12181000	8231200	3950200	11784	2411	10974	22914	55482	55482		1	9606
QPYAPPRPGAR	0	2	Unmodified	1208.6414	0.6414395	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	2	0		1															10.479	10.479	3	0.00209	2552	DP690-2	87.806	58.063			0.83881	0.83779	NaN	1	0	Median	44727000	23527000	21200000	11785	1270	10975	22915	55483;55484	55483		2	9606
QPYAVSELAGHQTSAESWGTGR	0	1	Unmodified	2331.088	0.087986745	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	13	0													1				16.03	16.03	3	3.8388E-15	10183	DP690-13	162.44	147.98			0.80921	0.93731	NaN	1	0	Median	177110000	90867000	86239000	11786	681	10976	22916	55485;55486;55487;55488	55488		4	9606
QQAGAQGPGSADLEDGEMGKR	1	1	Oxidation (M)	2116.9444	0.94435897	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	1	1	6	4		1								1							11.26	11.26	3	5.6371E-05	4110	DP690-10	109.28	88.051			0.6859	0.86726	NaN	1	0	Median	52937000	26318000	26619000	11787	2065	10977	22917;22918	55489;55490;55491;55492;55493	55490	2589	5	9606
QQAGAQGPGSADLEDGEMGKR	1	1	Unmodified	2100.9494	0.94944435	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	1	10	0										1							12.658	12.658	3	0.029311	6137	DP690-10	66.636	40.658			NaN	NaN	NaN	0	0	Median	31569000	31569000	0	11788	2065	10977	22919	55494	55494		1	9606
QQALTVSTDPEHR	0	1	Unmodified	1480.727	0.72701962	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	3	0			2														11.951	11.951	2;3	0.0018071	4611	DP690-3	132.17	87.854			2.326	2.6568	NaN	1	0	Median	24283000	8982300	15301000	11789	670	10978	22920;22921	55495;55496;55497	55497		3	9606
QQASHYLYVR	0	1	Unmodified	1263.636	0.63601977	2460	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	14	0														1			12.358	12.358	3	0.0059847	5169	DP690-14	68.626	50.358			1.0265	1.226	NaN	1	0	Median	105120000	50935000	54185000	11790	2460	10979	22922	55498;55499;55500;55501	55500		4	9606
QQDVIYELIQTELHHVR	0	1	Unmodified	2120.1015	0.10145196	1800	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	11	0											1						21.137	21.137	4	4.1292E-13	18185	DP690-11	184	144.22			NaN	NaN	NaN	0	0	Median	21642000	21642000	0	11791	1800	10980	22923	55502;55503	55503		2	9606
QQEAALELEELKK	2	0	Unmodified	1527.8144	0.81443765	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	1	11	0											1						14.941	14.941	3	0.00070828	9286	DP690-11	91.202	54.882			0.99167	1.115	NaN	1	0	Median	189440000	83802000	105640000	11792	1119	10981	22924	55504;55505	55505		2	9606
QQEALEEQAALEPK	1	0	Unmodified	1582.7839	0.7838658	1883	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	0	12	0												1					14.693	14.693	2	0.0056131	8531	DP690-12	112.84	60.896			NaN	NaN	NaN	0	0	Median	35591000	35591000	0	11793	1883	10982	22925	55506	55506		1	9606
QQEELLAEENQR	0	1	Unmodified	1485.7059	0.70594983	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							13.627	13.627	2	7.4133E-05	7498	DP690-10	166.66	93.424			0.76712	0.91747	1.0784	2	0	Median	233050000	136500000	96553000	11794	1319	10983	22926;22927	55507;55508;55509;55510;55511	55507		5	9606
QQEGEASSQDMTAQVTSPSGK	1	0	Oxidation (M)	2180.9492	0.94916958	1270	Q14315	FLNC	Filamin-C	yes	yes	0	1	0	7	3.74		1	1						1	1	1						10.994	10.994	2	1.3201E-28	3695	DP690-10	215.93	209.65			0.83314	0.95883	17.436	4	0	Median	94540000	53253000	41286000	11795	1270	10984	22928;22929;22930;22931;22932	55512;55513;55514;55515;55516;55517;55518;55519;55520;55521;55522;55523;55524;55525;55526;55527;55528	55515	1948	17	9606
QQEGEASSQDMTAQVTSPSGK	1	0	Unmodified	2164.9543	0.95425496	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7.83	4.14		2								1	3						13.294	13.294	2	1.6237E-23	6963	DP690-10	209.39	182.45			0.82953	0.91818	32.711	2	0	Median	81426000	45533000	35893000	11796	1270	10984	22933;22934;22935;22936;22937;22938	55529;55530;55531;55532;55533;55534;55535;55536;55537;55538;55539;55540;55541	55529		13	9606
QQELDLAAEQHR	0	1	Unmodified	1436.7008	0.70080487	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	2	0		1															12.538	12.538	3	0.0060106	4811	DP690-2	72.34	29.364			0.93191	0.97489	NaN	1	0	Median	7956100	4431000	3525100	11797	283	10985	22939	55542;55543	55543		2	9606
QQELGQELLR	0	1	Unmodified	1212.6463	0.64625011	2259	Q9NXW9	ALKBH4	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4	yes	yes	0	0	0	6	0						1											15.933	15.933	2	0.075516	9368	DP690-6	57.59	31.544			0.8439	0.96839	NaN	1	0	Median	8720900	4467200	4253700	11798	2259	10986	22940	55544	55544		1	9606
QQEQQVPILEK	1	0	Unmodified	1338.7143	0.71432967	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															14.479	14.479	2	9.5368E-05	6969	DP690-2	188.87	154.67			0.81383	0.82424	NaN	1	0	Median	28756000	15513000	13243000	11799	789	10987	22941	55545;55546;55547;55548;55549	55548		5	9606
QQEVVVAGSSLPTSSK	1	0	Unmodified	1615.8417	0.84171503	2111	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	8	4				1								1					14.308	14.308	2	3.894E-13	8005	DP690-12	212.1	165.64			0.70891	0.80742	4.9452	2	0	Median	34648000	20233000	14415000	11800	2111	10988	22942;22943	55550;55551;55552;55553	55550		4	9606
QQGASGEVYCPSGEK	1	0	Unmodified	1595.6886	0.68858521	1552	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	12	0												1					11.6	11.6	2	0.014865	4299	DP690-12	111.63	92.673			NaN	NaN	NaN	0	0	Median	0	0	0	11801	1552	10989	22944	55554	55554		1	9606
QQGLASYDYVR	0	1	Unmodified	1298.6255	0.62551466	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							15.188	15.188	2	0.00014914	8675	DP690-9	170.5	142.68			0.87443	0.98831	0.66334	2	0	Median	528960000	287770000	241200000	11802	1319	10990	22945;22946	55555;55556;55557;55558;55559;55560;55561;55562	55559		8	9606
QQGLVDGLFLLR	0	1	Unmodified	1357.7718	0.77178497	1198	Q13322	GRB10	Growth factor receptor-bound protein 10	yes	yes	0	0	0	12	0												1					21.928	21.928	2	0.049019	18260	DP690-12	86.882	57.138			NaN	NaN	NaN	0	0	Median	6500000	6500000	0	11803	1198	10991	22947	55563	55563		1	9606
QQGVLALRPYLQK	1	1	Unmodified	1512.8776	0.87764703	905	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	3	0			1														16.024	16.024	3	0.058026	10005	DP690-3	48.115	33.645			1.2212	1.3545	NaN	1	0	Median	17673000	7587400	10086000	11804	905	10992	22948	55564	55564		1	9606
QQHQPSASSILESLFR	0	1	Unmodified	1826.9275	0.92751034	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															20.873	20.873	3	0.00072224	14503	DP690-2	87.088	65.774			0.93936	0.98247	NaN	1	0	Median	8527500	4782600	3744900	11805	2418	10993	22949	55565;55566	55565		2	9606
QQHQQQLAEDAKDVPGGGPSSSAPAGAEADGPK	2	0	Unmodified	3227.5079	0.50792531	1650	Q8N3F8	MICALL1	MICAL-like protein 1	yes	yes	0	0	1	11	0											1						12.912	12.912	4	0.0049938	6293	DP690-11	55.895	36.916			NaN	NaN	NaN	0	0	Median	10606000	10606000	0	11806	1650	10994	22950	55567	55567		1	9606
QQHVIETLIGK	1	0	Unmodified	1264.7139	0.71393574	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	4	0				2													14.626	14.626	2;3	0.011178	7999	DP690-4	68.132	47.1			1.4187	1.5254	3.077	2	0	Median	47920000	20745000	27175000	11807	779	10995	22951;22952	55568;55569;55570	55569		3	9606
QQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKR	1	1	Unmodified	3669.533	0.53304721	1938	Q99496	RNF2	E3 ubiquitin-protein ligase RING2	yes	yes	0	0	1	14	0														1			9.9686	9.9686	5	4.2737E-06	2217	DP690-14	66.124	59.38			0.75587	0.91107	NaN	1	0	Median	3243500	1802100	1441300	11808	1938	10996	22953	55571;55572;55573;55574;55575;55576	55572		6	9606
QQIESYPTDSILEDQSDQR	0	1	Unmodified	2251.024	0.024049084	1161	Q12824	SMARCB1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	yes	yes	0	0	0	13.7	0.471													1	2			17.243	17.243	2	8.7231E-80	11846	DP690-13	326.92	273.35			NaN	NaN	NaN	0	0	Median	42835000	42835000	0	11809	1161	10997	22954;22955;22956	55577;55578;55579;55580	55578		4	9606
QQIQSIQQSIER	0	1	Unmodified	1456.7634	0.76340513	899	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	0	12	4								1								1	14.61	14.61	2	1.3875E-05	8008	DP690-16	192.12	149.93			0.85792	0.97523	7.208	2	0	Median	169470000	87716000	81759000	11810	899	10998	22957;22958	55581;55582;55583;55584;55585;55586;55587	55581		7	9606
QQISLATQMVR	0	1	Oxidation (M)	1289.6762	0.67617003	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	0	12	0												1					13.63	13.63	2	0.02594	7105	DP690-12	74.173	45.003			0.93421	1.1177	NaN	1	0	Median	27322000	13050000	14272000	11811	779	10999	22959	55588	55588	1159	1	9606
QQLALYTEKFEEFQNTLSK	2	0	Unmodified	2316.1638	0.16377745	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	1	11	0											1						19.719	19.719	3	2.9846E-13	16260	DP690-11	176.44	146.46			NaN	NaN	NaN	0	0	Median	68898000	0	68898000	11812	701	11000	22960	55589;55590	55590		2	9606
QQLAQYQQQQSQASAPSTSR	0	1	Unmodified	2234.0676	0.067585653	1308	Q15007	WTAP	Pre-mRNA-splicing regulator WTAP	yes	yes	0	0	0	13	0													1				12.328	12.328	2	1.3487E-98	5059	DP690-13	396.93	346.65			0.83413	1.0279	NaN	1	0	Median	18609000	10011000	8598700	11813	1308	11001	22961	55591;55592;55593;55594;55595	55593		5	9606
QQLEAVNEAIK	1	0	Unmodified	1241.6616	0.66156582	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	10	0										1							14.117	14.117	2	0.0064992	8236	DP690-10	85.29	61.26			0.77574	0.95357	NaN	1	0	Median	43070000	23632000	19438000	11814	317	11002	22962	55596	55596		1	9606
QQLHDITVPLEVFEYIDQGR	0	1	Unmodified	2399.2121	0.21212463	2001	Q9BTT4	MED10	Mediator of RNA polymerase II transcription subunit 10	yes	yes	0	0	0	16	0																1	22.64	22.64	3	0.00014397	17557	DP690-16	88.471	75.016			0.75309	0.88128	NaN	1	0	Median	2371700	1388300	983410	11815	2001	11003	22963	55597;55598;55599;55600	55598		4	9606
QQLSAEELDAQLDAYNAR	0	1	Unmodified	2033.9654	0.96541199	1574	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	0	0	15	0															3		18.624	18.624	2	0.00030755	13511	DP690-15	135.58	89.754			NaN	NaN	NaN	0	0	Median	2165900	2165900	0	11816	1574	11004	22964;22965;22966	55601;55602;55603	55601		3	9606
QQLTNTEVR	0	1	Unmodified	1087.5622	0.56218613	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	3	0			1														10.716	10.716	2	0.019256	3095	DP690-3	80.219	40.672			0.75029	0.85318	NaN	1	0	Median	26431000	15250000	11181000	11817	203	11005	22967	55604	55604		1	9606
QQMLEQHLQDVR	0	1	Oxidation (M)	1539.7464	0.74637486	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	1	0	3	0			1														12.602	12.602	3	0.049613	5466	DP690-3	69.229	37.881			NaN	NaN	NaN	0	0	Median	8835200	8835200	0	11818	708	11006	22968	55605	55605		1	9606
QQNELAELHANLAR	0	1	Unmodified	1605.8223	0.82231699	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							15.292	15.292	3	0.0020312	9954	DP690-10	78.763	55.625			0.76708	0.94575	NaN	1	0	Median	134930000	74291000	60641000	11819	1301	11007	22969	55606;55607	55607		2	9606
QQPLFVSGGDDYK	1	0	Unmodified	1452.6885	0.68850885	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														15.661	15.661	2	0.00084585	9611	DP690-3	104.82	104.82			2.5203	2.6928	NaN	1	0	Median	24324000	8238800	16085000	11820	878	11008	22970	55608;55609;55610;55611	55610		4	9606
QQPPEPEWIGDGESTSPSDK	1	0	Unmodified	2182.9655	0.96547157	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	11	0											1						16.283	16.283	2	1.1967E-07	11260	DP690-11	168.93	123.71			NaN	NaN	NaN	0	0	Median	0	0	0	11821	1687	11009	22971	55612	55612		1	9606
QQPTQFINPETPGYVGFANLPNQVHR	0	1	Unmodified	2951.4678	0.46783882	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	14	0														1			19.004	19.004	3	5.4371E-16	14290	DP690-14	164.46	164.46			0.53957	0.63144	NaN	1	0	Median	157990000	99872000	58119000	11822	1310	11010	22972	55613;55614;55615;55616	55616		4	9606
QQQFENLDQQLR	0	1	Unmodified	1545.7536	0.75356872	219	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	4	0				1													15.808	15.808	2	0.00047861	9599	DP690-4	142.36	117.12			0.91819	1.0673	NaN	1	0	Median	7155800	3302200	3853600	11823	219	11011	22973	55617	55617		1	9606
QQQLLNEENLR	0	1	Unmodified	1383.7106	0.71064128	2235	Q9NVI7;Q5T9A4	ATAD3A;ATAD3B	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B	yes	no	0	0	0	12	0												1					14.76	14.76	2	7.9109E-05	8663	DP690-12	152.11	124.81			0.89711	1.0514	NaN	1	0	Median	94038000	50897000	43142000	11824	2235	11012	22974	55618;55619;55620	55619		3	9606
QQQQQQQEQLYK	1	0	Unmodified	1575.7641	0.76413341	1419	Q5JSZ5	PRRC2B	Protein PRRC2B	yes	yes	0	0	0	10	0										1							11.081	11.081	2	0.0026269	3801	DP690-10	122.94	66.307			NaN	NaN	NaN	0	0	Median	0	0	0	11825	1419	11013	22975	55621	55621		1	9606
QQQQQQQQQQQQQQQQQQHVTSWPGK	1	0	Unmodified	3215.5205	0.5204961	1246	Q14119	VEZF1	Vascular endothelial zinc finger 1	yes	yes	0	0	0	12	0												1					11.525	11.525	3	4.1651E-16	4121	DP690-12	160.25	137.82			NaN	NaN	NaN	0	0	Median	4716200	4716200	0	11826	1246	11014	22976	55622;55623;55624;55625	55623		4	9606
QQSHFAMMHGGTGFAGIDSSSPEVK	1	0	2 Oxidation (M)	2637.1588	0.1587852	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	2	0	11.3	3.77						1								2			13.457	13.457	3;4	0.0002201	6761	DP690-14	78.991	72.221			0.92999	1.0623	11.028	3	0	Median	362670000	184230000	178440000	11827	1325	11015	22977;22978;22979	55626;55627;55628;55629;55630;55631;55632;55633;55634;55635;55636	55629	2053;2054	11	9606
QQSHFAMMHGGTGFAGIDSSSPEVK	1	0	Oxidation (M)	2621.1639	0.16387058	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	1	0	14	0														2			14.361	14.361	3;4	1.2329E-06	7968	DP690-14	130.3	121.55			0.85043	0.9821	8.1777	2	0	Median	645630000	339490000	306150000	11828	1325	11015	22980;22981	55637;55638;55639;55640;55641;55642;55643;55644	55640	2053;2054	8	9606
QQSHFAMMHGGTGFAGIDSSSPEVK	1	0	Unmodified	2605.169	0.16895596	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	14	0														2			15.395	15.395	3;4	0.00024892	9406	DP690-14	77.894	66.041			0.78672	0.91599	9.0464	2	0	Median	512150000	273710000	238450000	11829	1325	11015	22982;22983	55645;55646;55647;55648;55649	55649		5	9606
QQSIAGSADSKPIDVSR	1	1	Unmodified	1757.8908	0.89079049	1168	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	1	10	4						1								1			12.4	12.4	3	0.00022193	4978	DP690-6	102.72	84.122			0.765	0.90884	17.247	2	0	Median	45736000	24660000	21077000	11830	1168	11016	22984;22985	55650;55651;55652;55653;55654	55653		5	9606
QQTSLFIAR	0	1	Unmodified	1062.5822	0.58219329	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							15.22	15.22	2	0.062993	9844	DP690-10	63.419	28.063			0.6443	0.80423	NaN	1	0	Median	67950000	37553000	30397000	11831	1240	11017	22986	55655;55656	55655		2	9606
QQVAFYGQTLGQAQAHSQEQ	0	0	Unmodified	2218.0403	0.04030827	1875	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	12	0												1					16.105	16.105	2	1.274E-64	10550	DP690-12	360.74	320.36			NaN	NaN	NaN	0	0	Median	0	0	0	11832	1875	11018	22987	55657;55658;55659	55659		3	9606
QQVAPTDDETGKELVLALYDYQEK	2	0	Unmodified	2752.3443	0.34432059	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							20.566	20.566	3	0.00032905	17512	DP690-10	105.92	72.275			NaN	NaN	NaN	0	0	Median	28980000	0	28980000	11833	1236	11019	22988	55660	55660		1	9606
QQVASLETNDPILGFQATNER	0	1	Unmodified	2330.1503	0.15025265	1919	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	0	0	4	0				1													19.148	19.148	2	0.00012226	13734	DP690-4	121.13	86.088			NaN	NaN	NaN	0	0	Median	1596600	1596600	0	11834	1919	11020	22989	55661	55661		1	9606
QQVLPLDSIYKK	2	0	Unmodified	1430.8133	0.81331543	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							15.89	15.89	3	0.0017717	10830	DP690-10	82.505	54.829			0.78605	0.95293	NaN	1	0	Median	117530000	59851000	57679000	11835	13	11021	22990	55662	55662		1	9606
QREELGQGLQGVEQK	1	1	Unmodified	1697.8697	0.86966111	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	12	0												1					12.976	12.976	3	0.057208	6243	DP690-12	46.156	25.423			0.8668	1.0441	NaN	1	0	Median	70911000	35334000	35576000	11836	1131	11022	22991	55663	55663		1	9606
QRELAEQELEK	1	1	Unmodified	1371.6994	0.69940789	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									2	2							11.464	11.464	2;3	2.0752E-06	3812	DP690-9	167.2	123.7			0.84022	0.96897	6.997	4	0	Linear	181740000	84548000	97196000	11837	1319	11023	22992;22993;22994;22995	55664;55665;55666;55667;55668;55669;55670;55671;55672	55671		9	9606
QRELEQLGR	0	2	Unmodified	1127.6047	0.60471964	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0										2							11.169	11.169	3	7.9115E-05	3970	DP690-10	166.09	32.095			0.73725	0.8781	NaN	1	0	Median	9221800	3942800	5278900	11838	1319	11024	22996;22997	55673;55674;55675;55676	55673		4	9606
QRHDGAFLIR	0	2	Unmodified	1211.6523	0.65233854	1010	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	1	15	0															1		11.434	11.434	3	0.022247	4091	DP690-15	62.466	44.745			1.0373	1.1252	NaN	1	0	Median	22598000	9695300	12903000	11839	1010	11025	22998	55677;55678	55678		2	9606
QRPGASTDSSTQGANLPDFELLSR	0	2	Unmodified	2546.2361	0.23610754	2417	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	1	10	0										1							18.137	18.137	3	0.0014142	14138	DP690-10	106.74	45.914			NaN	NaN	NaN	0	0	Median	29306000	29306000	0	11840	2417	11026	22999	55679	55679		1	9606
QRPLTASLQCNSTAQTEK	1	1	Unmodified	2032.0008	0.0007516416	2334	Q9UFW8	CGGBP1	CGG triplet repeat-binding protein 1	yes	yes	0	0	1	15.5	0.5															1	1	11.925	11.925	3	1.8939E-14	4558	DP690-16	195.17	167.74			0.74565	0.85292	6.2736	2	0	Median	44419000	25837000	18582000	11841	2334	11027	23000;23001	55680;55681;55682;55683;55684;55685;55686;55687	55685		8	9606
QRVRMADNEVMDAFR	0	3	Oxidation (M)	1852.8672	0.86723505	261	O75528	TADA3	Transcriptional adapter 3	yes	yes	0	1	2	14	0														1			20.971	20.971	2	0.033057	16889	DP690-14	54.343	26.166			6.3088	6.8243	NaN	1	0	Median	14646000	2828000	11818000	11842	261	11028	23002	55688	55688	262	1	9606
QRYEILTPNSIPK	1	1	Unmodified	1557.8515	0.85149185	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		2															15.335	15.335	2;3	0.010572	8090	DP690-2	68.044	41.92			1.0377	1.0215	0.95001	2	0	Median	24034000	11271000	12764000	11843	668	11029	23003;23004	55689;55690	55689		2	9606
QSAGAVVIILPR	0	1	Unmodified	1222.7398	0.73975656	1812	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	12	0												1					17.857	17.857	2	0.0011618	12998	DP690-12	103.7	92.549			0.91303	1.0945	NaN	1	0	Median	22741000	12075000	10667000	11844	1812	11030	23005	55691	55691		1	9606
QSANDFFSYYDSHR	0	1	Unmodified	1735.7227	0.72266253	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										1							17.263	17.263	3	0.067306	12858	DP690-10	33.624	17.401			0.92354	1.1461	NaN	1	0	Median	93072000	47735000	45336000	11845	1783	11031	23006	55692	55692		1	9606
QSDVMIVAGTLTNK	1	0	Oxidation (M)	1491.7603	0.76029359	245	O75251	NDUFS7	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	yes	yes	0	1	0	16	0																1	16.568	16.568	2	0.01596	10602	DP690-16	96.23	48.042			NaN	NaN	NaN	0	0	Median	2943800	2943800	0	11846	245	11032	23007	55693;55694	55694	234	2	9606
QSELESIQEVLGDYR	0	1	Unmodified	1764.853	0.853008	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								21.982	21.982	2	2.404E-05	17239	DP690-9	147.33	75.006			0.67668	0.83912	NaN	1	0	Median	2652500	1714800	937700	11847	2411	11033	23008	55695	55695		1	9606
QSETSTQSQSDWSR	0	1	Unmodified	1625.6918	0.69175633	2336	Q9UGK8	SERGEF	Secretion-regulating guanine nucleotide exchange factor	yes	yes	0	0	0	5	0					1												11.255	11.255	2	3.2341E-14	3737	DP690-5	217.22	179.72			NaN	NaN	NaN	0	0	Median	0	0	0	11848	2336	11034	23009	55696	55696		1	9606
QSGEAFVELGSEDDVK	1	0	Unmodified	1708.7792	0.77917435	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	12.8	3.62					1								1	2	1	1	16.954	16.954	2	6.2937E-28	11361	DP690-13	296.28	239.13			0.95283	1.0268	17.011	4	0	Median	1260300000	648660000	611640000	11849	856	11035	23010;23011;23012;23013;23014;23015	55697;55698;55699;55700;55701;55702;55703;55704;55705;55706;55707;55708;55709;55710;55711;55712;55713	55700		17	9606
QSGESIDIITR	0	1	Unmodified	1217.6252	0.62518031	1355	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	3	0			1														15.322	15.322	2	0.031153	9091	DP690-3	93.442	43.334			NaN	NaN	NaN	0	0	Median	0	0	0	11850	1355	11036	23016	55714	55714		1	9606
QSGSLPLSSLTHVLR	0	1	Unmodified	1593.8839	0.88385462	1205	Q13416	ORC2	Origin recognition complex subunit 2	yes	yes	0	0	0	12	0												2					18.118	18.118	3	5.5048E-05	13370	DP690-12	119.62	119.62			0.92518	1.106	NaN	1	0	Median	28699000	17821000	10877000	11851	1205	11037	23017;23018	55715;55716;55717	55716		3	9606
QSIAIDDCTFHQCVR	0	1	Unmodified	1848.8247	0.82470153	1836	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	13	0													1				14.725	14.725	3	1.5988E-05	8434	DP690-13	125.47	106.4			1.1366	1.3822	NaN	1	0	Median	48071000	25161000	22910000	11852	1836	11038	23019	55718;55719;55720	55719		3	9606
QSIGQFHEGDAYVVK	1	0	Unmodified	1676.8158	0.81583463	323	O95425	SVIL	Supervillin	yes	yes	0	0	0	10	0										1							14.486	14.486	3	0.083268	8802	DP690-10	35.726	8.7837			0.78449	0.96843	NaN	1	0	Median	83994000	42188000	41806000	11853	323	11039	23020	55721	55721		1	9606
QSLEASLAETEGR	0	1	Unmodified	1389.6736	0.67358707	42;30	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	no	no	0	0	0	7	5.06	1			1		1		1								1	16.01	16.01	2	9.615E-74	9883	DP690-4	293.88	228.72		+	NaN	NaN	NaN	0	0	Median	87925000	87925000	0	11854	42;30	11040	23021;23022;23023;23024;23025	55722;55723;55724;55725;55726;55727;55728;55729;55730	55727		9	9606
QSLPPGLAVK	1	0	Unmodified	1008.5968	0.59678072	1018	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	0	12	4								1								1	14.539	14.539	2	0.00089052	7903	DP690-16	109.48	80.329			0.77143	0.8523	11.656	2	0	Median	168860000	96698000	72162000	11855	1018	11041	23026;23027	55731;55732;55733;55734;55735;55736	55731		6	9606
QSLSPMSQRPVLK	1	1	Oxidation (M)	1485.7973	0.79734779	2212	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	1	1	13	0													1				16.106	16.106	2	0.02677	10265	DP690-13	83.499	16.386			0.69333	0.74694	NaN	1	0	Median	212150000	123260000	88893000	11856	2212	11042	23028	55737;55738	55738	2689	2	9606
QSNNEANLREEVLK	1	1	Unmodified	1642.8275	0.82746195	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	1	3	0			1														13.341	13.341	3	0.00018191	6411	DP690-3	128.68	83.847			0.72929	0.80883	NaN	1	0	Median	41939000	24648000	17291000	11857	1739	11043	23029	55739;55740;55741	55741		3	9606
QSSFALLGDLTK	1	0	Unmodified	1278.682	0.68196691	1799	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	yes	no	0	0	0	3	0			1														20.174	20.174	2	0.0024848	15344	DP690-3	131.83	57.94			NaN	NaN	NaN	0	0	Median	7685000	0	7685000	11858	1799	11044	23030	55742	55742		1	9606
QSSPSGSEQLVR	0	1	Unmodified	1273.6262	0.62624295	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	0	11.5	0.5											1	1					11.485	11.485	2	7.0814E-07	4027	DP690-12	164.66	104.6			0.90466	1.0925	NaN	1	0	Median	103190000	55572000	47619000	11859	144	11045	23031;23032	55743;55744;55745;55746;55747;55748	55747		6	9606
QSSQPAETDSMSLSEK	1	0	Oxidation (M)	1739.752	0.75197332	1582	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	1	0	14	2												1				1	11.014	11.014	2	1.6227E-08	3515	DP690-12	182.02	164.21			0.84272	0.99309	12.764	2	0	Median	40326000	20192000	20134000	11860	1582	11046	23033;23034	55749;55750;55751;55752;55753;55754;55755	55751	2246	7	9606
QSSQPAETDSMSLSEK	1	0	Unmodified	1723.7571	0.7570587	1582	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	12	0												1					13.238	13.238	2	1.0251E-09	6487	DP690-12	194.7	175.89			0.80379	0.95721	NaN	1	0	Median	40852000	23811000	17040000	11861	1582	11046	23035	55756;55757;55758;55759;55760	55757		5	9606
QSSSASLETLLALLQAEGAK	1	0	Unmodified	2016.0739	0.07389981	2148	Q9H9H4	VPS37B	Vacuolar protein sorting-associated protein 37B	yes	yes	0	0	0	14	0														1			24.035	24.035	2	2.0227E-06	20525	DP690-14	158.29	158.29			0.85928	1.0122	NaN	1	0	Median	4024600	1830100	2194500	11862	2148	11047	23036	55761;55762;55763;55764	55764		4	9606
QSSSTNYTNELK	1	0	Unmodified	1370.6314	0.6313879	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	11	0											1						12.697	12.697	2	8.2489E-05	5989	DP690-11	163.84	124.96			0.89085	1.0252	NaN	1	0	Median	164720000	81731000	82990000	11863	2340	11048	23037	55765;55766;55767;55768	55766		4	9606
QSSVTQVTEQSPK	1	0	Unmodified	1417.7049	0.7048872	1299	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	9.5	0.5									1	1							11.545	11.545	2	6.9134E-05	4393	DP690-10	133.42	80.296			0.68636	0.84354	NaN	1	0	Median	36653000	21442000	15211000	11864	1299	11049	23038;23039	55769;55770;55771;55772;55773	55770		5	9606
QSTGSAPQGPAYHGVNR	0	1	Unmodified	1725.8183	0.81829425	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	10	0										1							10.584	10.584	3	0.0051977	3036	DP690-10	93.237	60.09			NaN	NaN	NaN	0	0	Median	90796000	90796000	0	11865	103	11050	23040	55774	55774		1	9606
QSTVLAPVIDLK	1	0	Unmodified	1282.7497	0.74965254	1876	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	13	0													1				18.592	18.592	2	0.026403	13596	DP690-13	69.01	69.01			0.74614	0.86607	NaN	1	0	Median	35644000	21816000	13827000	11866	1876	11051	23041	55775	55775		1	9606
QSVEADINGLR	0	1	Unmodified	1200.6099	0.6098646	42;30	CON__P13645;P13645;CON__Q2M2I5;Q2M2I5;CON__P02535-1	KRT10;KRT24	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 24	no	no	0	0	0	9.5	6.5			1													1	15.686	15.686	2	0.00031264	9475	DP690-16	149.72	87.138		+	NaN	NaN	NaN	0	0	Median	12740000	12740000	0	11867	42;30	11052	23042;23043	55776;55777;55778	55777		3	9606
QSVEADINGLRR	0	2	Unmodified	1356.711	0.71097563	42;30	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	no	no	0	0	1	5.5	3.04		1	1					1	1								14.131	14.131	2	3.2952E-11	7421	DP690-9	190.57	110.6		+	NaN	NaN	NaN	0	0	Median	36706000	36706000	0	11868	42;30	11053	23044;23045;23046;23047	55779;55780;55781;55782;55783;55784	55784		6	9606
QSVENDIHGLR	0	1	Unmodified	1266.6317	0.63166267	388	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	13	0													2				12.808	12.808	3	0.018544	5730	DP690-13	77.062	33.644			NaN	NaN	NaN	0	0	Median	30867000	0	30867000	11869	388	11054	23048;23049	55785;55786	55786		2	9606
QSVENDIHGLRK	1	1	Unmodified	1394.7266	0.72662569	388	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	1	13	0													1				10.945	10.945	3	0.001585	3306	DP690-13	84.188	57.777			0.77536	0.85534	NaN	1	0	Median	146760000	72279000	74482000	11870	388	11055	23050	55787;55788;55789;55790	55789		4	9606
QSVVVLMGSLAK	1	0	Unmodified	1230.7006	0.70059386	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							19.022	19.022	2	0.0068281	15337	DP690-10	96.229	74.484			1.0459	1.2841	NaN	1	0	Median	33298000	19106000	14192000	11871	1782	11056	23051	55791	55791		1	9606
QTAAQLILK	1	0	Unmodified	984.59678	0.59678072	249	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	14	0														1			15.247	15.247	2	0.0059872	9177	DP690-14	95.815	48.241			0.99654	1.2126	NaN	1	0	Median	42765000	22925000	19839000	11872	249	11057	23052	55792;55793;55794	55792		3	9606
QTALLDADDPVSQLHK	1	0	Unmodified	1749.8897	0.88972785	1125	Q06330	RBPJ	Recombining binding protein suppressor of hairless	yes	yes	0	0	0	12	0												1					16.19	16.19	3	0.024754	10712	DP690-12	78.249	18.385			NaN	NaN	NaN	0	0	Median	90474000	90474000	0	11873	1125	11058	23053	55795;55796	55795		2	9606
QTALVELLK	1	0	Unmodified	1013.6121	0.61209643	37	CON__P02769			yes	yes	0	0	0	3	1		1		1													18.328	18.328	2	0.012139	11560	DP690-2	109.11	46.393		+	NaN	NaN	NaN	0	0	Median	38531000	38531000	0	11874	37	11059	23054;23055	55797;55798;55799	55797		3	
QTASVTLQAIAAQNAAVQAVNAHSNILK	1	0	Unmodified	2831.5254	0.52535369	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	11	0											1						20.141	20.141	3	6.2334E-06	16814	DP690-11	115.55	109.31			0.818	0.95445	NaN	1	0	Median	137790000	64739000	73056000	11875	1375	11060	23056	55800;55801;55802;55803;55804	55803		5	9606
QTATALPTGTSK	1	0	Unmodified	1174.6194	0.61936665	1599	Q8IUQ4	SIAH1	E3 ubiquitin-protein ligase SIAH1	yes	yes	0	0	0	15	0															1		11.106	11.106	2	0.044457	3675	DP690-15	62.166	31.999			0.7762	0.91514	NaN	1	0	Median	9400400	4709900	4690500	11876	1599	11061	23057	55805	55805		1	9606
QTDVLQQLSIQMANAK	1	0	Oxidation (M)	1802.9196	0.91964777	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	3.75	3.03		3							1								17.7	17.7	2	1.5823E-07	12025	DP690-9	168.83	105.42			NaN	NaN	NaN	0	0	Median	5392700	4233700	1159000	11877	1264	11062	23058;23059;23060;23061	55806;55807;55808;55809;55810;55811	55811	1925	6	9606
QTETEMLYGSAPR	0	1	Oxidation (M)	1497.677	0.67695789	183	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	1	0	12	0												1					13.743	13.743	2	0.0043798	7213	DP690-12	114.86	70.545			NaN	NaN	NaN	0	0	Median	0	0	0	11878	183	11063	23062	55812	55812	197	1	9606
QTGEGVGPQEYTLLK	1	0	Unmodified	1618.8203	0.82025131	2305	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														16.746	16.746	2	0.077346	10954	DP690-3	53.6	31.262			1.0041	1.0618	NaN	1	0	Median	9398400	5269200	4129200	11879	2305	11064	23063	55813	55813		1	9606
QTGGLGISIAGGK	1	0	Unmodified	1157.6404	0.64043645	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							15.305	15.305	2	0.015618	9955	DP690-10	86.463	35.404			0.86789	1.0711	NaN	1	0	Median	110620000	64581000	46040000	11880	1254	11065	23064	55814;55815	55814		2	9606
QTIDNSQGAYQEAFDISKK	2	0	Unmodified	2142.0229	0.022926872	599	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	1	11	4							1								1		15.922	15.922	3	0.0047834	9386	DP690-7	58.93	43.338			1.0327	1.1425	3.2279	2	0	Median	107220000	49836000	57382000	11881	599	11066	23065;23066	55816;55817;55818;55819	55818		3	9606
QTLAAFVPLLLK	1	0	Unmodified	1312.8119	0.81185887	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	3	0			1														22.927	22.927	2	0.0036842	18519	DP690-3	89.029	69.032			1.0274	1.0756	NaN	1	0	Median	3796700	1716400	2080300	11882	1311	11067	23067	55820;55821;55822;55823;55824	55823		5	9606
QTLLAVLQFLR	0	1	Unmodified	1300.7867	0.78670675	1337	Q15542	TAF5	Transcription initiation factor TFIID subunit 5	yes	yes	0	0	0	11	0											1						24.249	24.249	2	0.0002926	21962	DP690-11	157.91	135.67			0.74863	0.91119	NaN	1	0	Median	4632500	2380000	2252500	11883	1337	11068	23068	55825;55826;55827	55825		3	9606
QTLMWSATWPK	1	0	Unmodified	1347.6645	0.66454271	517;1793	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	11.5	0.5											1	1					19.323	19.323	2	7.7445E-05	15633	DP690-11	140.17	118.72			0.8095	0.95884	17.123	2	0	Median	193770000	103910000	89864000	11884	1793;517	11069	23069;23070	55828;55829;55830;55831;55832;55833;55834;55835	55828		8	9606
QTLMWSATWPK	1	0	Oxidation (M)	1363.6595	0.65945733	517;1793	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	1	0	12	0												1					18.269	18.269	2	0.00090259	13534	DP690-12	112.11	77.334			0.85029	0.96785	NaN	1	0	Median	146760000	82281000	64480000	11885	1793;517	11069	23071	55836;55837	55837	658	2	9606
QTLQEDLLR	0	1	Unmodified	1114.5982	0.59823728	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	11	0											1						16.401	16.401	2	0.0059604	11388	DP690-11	122.19	45.71			NaN	NaN	NaN	0	0	Median	130550000	130550000	0	11886	736	11070	23072	55838;55839	55838		2	9606
QTLSIYQALK	1	0	Unmodified	1163.655	0.65502388	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							17.427	17.427	2	8.3057E-05	11737	DP690-9	162.49	113.07			0.85884	1.0309	6.3243	2	0	Median	219690000	117370000	102320000	11887	1319	11071	23073;23074	55840;55841;55842;55843;55844	55843		5	9606
QTLSIYQALKK	2	0	Unmodified	1291.75	0.7499869	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.33	0.471									2	1							15.111	15.111	2;3	0.0017937	8627	DP690-9	82.029	66.997			0.80734	0.96572	8.6598	3	0	Median	241460000	153860000	87594000	11888	1319	11072	23075;23076;23077	55845;55846;55847;55848;55849;55850;55851;55852;55853	55851		9	9606
QTLSTPGTIILGTIPVPK	1	0	Unmodified	1835.0768	0.076800343	1990	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	0	12.7	4.03							1								1	1	21.31	21.31	2	0.00014957	16609	DP690-15	117.2	107.67			0.66767	0.78714	12.15	3	0	Median	22734000	13033000	9700800	11889	1990	11073	23078;23079;23080	55854;55855;55856;55857;55858;55859;55860;55861;55862;55863	55858		10	9606
QTNLENLDQAFSVAER	0	1	Unmodified	1833.8857	0.88570511	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.3	0.943									1	3	1	1					19.526	19.526	2	2.8372999999999997E-58	16043	DP690-10	292.39	189.14			0.75891	0.90115	18.923	4	0	Median	523370000	309730000	213650000	11890	1319	11074	23081;23082;23083;23084;23085;23086	55864;55865;55866;55867;55868;55869;55870;55871;55872;55873;55874;55875;55876;55877;55878;55879;55880;55881	55867		18	9606
QTPDFHTVIGDTVTGLLER	0	1	Unmodified	2098.0695	0.069483134	2136	Q9H8H0	NOL11	Nucleolar protein 11	yes	yes	0	0	0	11	0											1						22.346	22.346	3	0.00019042	19676	DP690-11	98.391	98.391			1.029	1.2519	NaN	1	0	Median	19002000	9568500	9433200	11891	2136	11075	23087	55882;55883;55884	55882		3	9606
QTQAASASQGSASAAEVLLR	0	1	Unmodified	1944.9865	0.98648179	1812	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	12.5	0.5												1	1				16.664	16.664	2	1.3309E-50	11338	DP690-12	369.51	334.82			1.053	1.2547	NaN	1	0	Median	32848000	16752000	16096000	11892	1812	11076	23088;23089	55885;55886;55887;55888;55889	55887		5	9606
QTQAIPYTGPFNLLCYQLQK	1	0	Unmodified	2382.2042	0.20420248	2370	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	11	0											1						22.226	22.226	2	0.00020003	19601	DP690-11	122.46	70.194			NaN	NaN	NaN	0	0	Median	5712500	5712500	0	11893	2370	11077	23090	55890;55891;55892	55891		3	9606
QTQTFTTYSDNQPGVLIQVYEGER	0	1	Unmodified	2773.3195	0.31950282	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	8	4				1								1					20.143	20.143	2	1.2854000000000001E-30	14840	DP690-4	232.78	219.99			1.3412	1.5939	49.976	2	0	Median	8285400	2722800	5562600	11894	463	11078	23091;23092	55893;55894;55895;55896;55897;55898	55895		6	9606
QTTITSHFAK	1	0	Unmodified	1132.5877	0.58767259	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							10.966	10.966	3	0.028869	3648	DP690-10	53.013	53.013			0.86318	1.0464	NaN	1	0	Median	12558000	5939200	6618500	11895	591	11079	23093	55899;55900	55899		2	9606
QTTSPSGSLLR	0	1	Unmodified	1145.6041	0.60405094	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	3	0			1														12.878	12.878	2	0.021113	5903	DP690-3	72.243	25.161			0.94314	1.0791	NaN	1	0	Median	14401000	7798800	6602200	11896	1076	11080	23094	55901	55901		1	9606
QTTVSNSQQAYQEAFEISK	1	0	Unmodified	2158.0178	0.017841494	640	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	7	0							1										17.243	17.243	2	1.9229E-09	11197	DP690-7	146	112.39			1.2917	1.4095	NaN	1	0	Median	15571000	7153500	8417100	11897	640	11081	23095	55902;55903;55904;55905	55905		4	9606
QTVADQVLVGSYCVFSNQGGLVHPK	1	0	Unmodified	2702.3486	0.34863488	907	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	7	0							1										20.184	20.184	3	0.037777	14895	DP690-7	78.531	66.408			1.273	1.3926	NaN	1	0	Median	12089000	6114100	5975100	11898	907	11082	23096	55906	55906		0	9606
QTVAVGVIK	1	0	Unmodified	913.55967	0.55966693	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	9.25	2.86					1				1	1			1				13.335	13.335	1;2	0.016295	6228	DP690-13	83.206	31.419			0.97223	0.97973	6.6954	4	0	Median	13489000000	6752999999.999999	6735999999.999999	11899	1031;1118	11083	23097;23098;23099;23100	55907;55908;55909;55910;55911;55912	55908		6	9606
QTVEADVNGLR	0	1	Unmodified	1200.6099	0.6098646	40	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	16	0																1	14.215	14.215	2	0.0018835	7486	DP690-16	135.55	68.981		+	NaN	NaN	NaN	0	0	Median	5006000	5006000	0	11900	40	11084	23101	55913;55914	55913		2	9606
QTVLEALQQLIR	0	1	Unmodified	1410.8195	0.81946344	1774	Q92560	BAP1	Ubiquitin carboxyl-terminal hydrolase BAP1	yes	yes	0	0	0	11	0											1						24.826	24.826	2	9.6458E-07	22666	DP690-11	160.53	117.02			NaN	NaN	NaN	0	0	Median	1500400	0	1500400	11901	1774	11085	23102	55915;55916	55916		2	9606
QTYFLPVIGLVDAEK	1	0	Unmodified	1691.9134	0.91342341	519	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	5	0					1												23.033	23.033	2	0.00013745	18043	DP690-5	120.84	120.84			0.70864	0.70822	NaN	1	0	Median	23987000	13504000	10483000	11902	519	11086	23103	55917;55918;55919	55917		3	9606
QTYSTEPNNLK	1	0	Unmodified	1293.6201	0.62009493	759	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	12	4								1								1	11.479	11.479	2	1.771E-06	4062	DP690-16	249.93	200.39			0.88232	0.98688	4.0825	2	0	Median	129020000	67614000	61404000	11903	759	11087	23104;23105	55920;55921;55922;55923;55924;55925	55922		6	9606
QVAEQFLNMR	0	1	Oxidation (M)	1250.6078	0.60775611	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	13	0													2				15.006	15.006	2	0.00029925	8815	DP690-13	130.56	110.57			0.82462	0.89744	8.8817	2	0	Median	1164900000	646570000	518330000	11904	565	11088	23106;23107	55926;55927;55928;55929;55930;55931	55930	742	6	9606
QVAEQFLNMR	0	1	Unmodified	1234.6128	0.61284149	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13	0													1				17.05	17.05	2	2.7861E-05	11476	DP690-13	180.93	144.48			0.78888	0.87293	NaN	1	0	Median	423160000	237570000	185600000	11905	565	11088	23108	55932;55933;55934;55935	55932		4	9606
QVASFGSAAPPR	0	1	Unmodified	1186.6095	0.60947067	2371	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	yes	yes	0	0	0	2	0		1															13.15	13.15	2	0.062451	5604	DP690-2	57.532	42.381			0.86696	0.88663	NaN	1	0	Median	2277400	1212900	1064500	11906	2371	11089	23109	55936	55936		1	9606
QVCGDSIKPEETEQEVAADETR	1	1	Unmodified	2490.118	0.11802582	1863	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	1	8	4				1								1					14.379	14.379	3	8.5579E-05	8154	DP690-12	115.42	102.1			0.77065	0.89525	13.241	2	0	Median	96710000	54934000	41775000	11907	1863	11090	23110;23111	55937;55938;55939;55940;55941;55942;55943	55937		7	9606
QVCQLPGLFSYAQHIASIDGR	0	1	Unmodified	2359.1743	0.17429933	2517	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	14.2	0.4														4	1		21.289	21.289	2;3	2.3575E-23	17060	DP690-14	208.4	180.34			0.66323	0.75565	11.387	3	0	Median	298890000	178070000	120820000	11908	2517	11091	23112;23113;23114;23115;23116	55944;55945;55946;55947;55948;55949;55950;55951;55952;55953;55954;55955;55956;55957;55958	55949		14	9606
QVCQLPGLFSYAQHIASIDGRR	0	2	Unmodified	2515.2754	0.27541036	2517	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	1	14	0														1			19.873	19.873	4	0.00033981	15271	DP690-14	82.755	69.88			0.70218	0.82518	NaN	1	0	Median	69821000	39839000	29982000	11909	2517	11092	23117	55959;55960;55961	55960		3	9606
QVDLENVWLHFIR	0	1	Unmodified	1667.8784	0.87837531	89	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	11	0											1						22.407	22.407	3	0.019514	19844	DP690-11	57.567	38.28			0.95076	1.1731	NaN	1	0	Median	6476100	3951200	2524800	11910	89	11093	23118	55962	55962		1	9606
QVDLIDLVR	0	1	Unmodified	1069.6132	0.61315906	2375	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	11	0											1						20.253	20.253	2	0.00072842	16922	DP690-11	137.9	137.9			0.90198	1.0773	NaN	1	0	Median	47195000	23317000	23878000	11911	2375	11094	23119	55963;55964;55965	55963		3	9606
QVDLLAYIAK	1	0	Unmodified	1132.6492	0.64921022	1610	Q8IX04	UEVLD	Ubiquitin-conjugating enzyme E2 variant 3	yes	yes	0	0	0	5	0					1												20.613	20.613	2	0.00048121	15091	DP690-5	119.21	71.553			0.66951	0.67	NaN	1	0	Median	15165000	9158500	6006800	11912	1610	11095	23120	55966;55967;55968;55969;55970	55969		5	9606
QVEDDIQQLLK	1	0	Unmodified	1327.6983	0.69834526	676	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	5	0					1												19.272	19.272	2	0.020081	13555	DP690-5	72.607	42.94			1.4475	1.4493	NaN	1	0	Median	12678000	4501400	8176200	11913	676	11096	23121	55971	55971		1	9606
QVEDGEVFDFR	0	1	Unmodified	1339.6044	0.60444487	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	3	0			1														18.014	18.014	2	0.00032244	12603	DP690-3	119.22	89.057			0.65585	0.74904	NaN	1	0	Median	24335000	14010000	10325000	11914	2437	11097	23122	55972;55973	55972		2	9606
QVEEEILALK	1	0	Unmodified	1170.6496	0.64960415	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							17.613	17.613	2	8.8509E-05	11856	DP690-9	157.68	73.18			0.84808	0.99628	0.67924	2	0	Median	305860000	170340000	135520000	11915	1319	11098	23123;23124	55974;55975;55976;55977;55978;55979;55980;55981	55980		8	9606
QVEELYHSLLELGEK	1	0	Unmodified	1785.9149	0.91487997	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							19.903	19.903	3	0.010915	16598	DP690-10	60.246	15.278			0.76433	0.93962	NaN	1	0	Median	46133000	21966000	24166000	11916	1236	11099	23125	55982	55982		1	9606
QVENAGAIGPSR	0	1	Unmodified	1197.6102	0.61019895	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	12	0												1					11.138	11.138	2	0.00017389	3680	DP690-12	138.22	72.967			0.62427	0.74071	NaN	1	0	Median	50058000	32461000	17597000	11917	2344	11100	23126	55983;55984;55985;55986;55987	55985		5	9606
QVEVINFGDCLVR	0	1	Unmodified	1547.7766	0.77661235	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					19.479	19.479	2	8.7194E-11	15179	DP690-12	229.73	184.86			0.73683	0.8608	NaN	1	0	Median	100170000	55881000	44288000	11918	750	11101	23127	55988;55989;55990;55991;55992;55993	55989		6	9606
QVEVTVHKGDECQLVGPAQPSHWK	2	0	Unmodified	2728.3391	0.33913283	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0										1							13.658	13.658	5	0.046113	7608	DP690-10	35.879	21.462			0.73181	0.8212	NaN	1	0	Median	323000000	191220000	131780000	11919	1319	11102	23128	55994;55995;55996	55996		3	9606
QVGVGYVDSIQR	0	1	Unmodified	1319.6834	0.68336389	736	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	3	0			1														15.302	15.302	2	0.0026597	9085	DP690-3	91.658	56.856			0.75577	0.85207	NaN	1	0	Median	31113000	17908000	13205000	11920	736	11103	23129	55997;55998	55998		2	9606
QVIIQGFR	0	1	Unmodified	959.55525	0.55525025	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							15.623	15.623	2	0.020896	10493	DP690-10	110.34	47.359			NaN	NaN	NaN	0	0	Median	47237000	47237000	0	11921	2424	11104	23130	55999	55999		1	9606
QVKPYVEEGLHPQIIIR	1	1	Unmodified	2018.1313	0.13129553	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	1	8	4				1								1					15.648	15.648	4	9.9828E-07	9901	DP690-12	135.86	131.19			0.91704	1.0572	40.719	2	0	Median	153720000	79626000	74097000	11922	1959	11105	23131;23132	56000;56001;56002;56003;56004;56005;56006;56007;56008	56000		9	9606
QVLDLEDLVFTQGSHFMANK	1	0	Unmodified	2291.1256	0.1256178	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							22.401	22.401	3	0.063502	19943	DP690-10	63.374	32.837			NaN	NaN	NaN	0	0	Median	0	0	0	11923	269	11106	23133	56009	56009		1	9606
QVLDNLTMEK	1	0	Oxidation (M)	1205.5962	0.59618837	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	3.67	3.09	1	1						1									14.498	14.498	2	0.00047448	7158	DP690-2	146.69	95.358		+	NaN	NaN	NaN	0	0	Median	98498000	98498000	0	11924	667	11107	23134;23135;23136	56010;56011;56012;56013;56014	56012	939	5	9606
QVLEPSFR	0	1	Unmodified	974.51853	0.5185304	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	10.7	4.03					1								1	1			14.656	14.656	2	0.0034713	7693	DP690-5	129.68	63.879			0.88863	0.93366	NaN	1	0	Median	1177400000	614850000	562520000	11925	598	11108	23137;23138;23139	56015;56016;56017;56018;56019	56018		4	9606
QVLHSQCVLR	0	1	Unmodified	1238.6554	0.655375	1904	Q96NE9	FRMD6	FERM domain-containing protein 6	yes	yes	0	0	0	12	0												1					11.136	11.136	3	0.0057274	3709	DP690-12	75.294	41.428			1.0187	1.2305	NaN	1	0	Median	16280000	7802200	8477500	11926	1904	11109	23140	56020;56021	56020		2	9606
QVLIASHLPSYELR	0	1	Unmodified	1624.8937	0.89369102	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															16.84	16.84	3	8.2289E-05	9985	DP690-2	115.12	96.751			0.95801	1.0014	NaN	1	0	Median	10211000	5648000	4563400	11927	1179	11110	23141	56022;56023	56022		2	9606
QVLLAQAEAEK	1	0	Unmodified	1198.6558	0.65575216	1268	Q14254	FLOT2	Flotillin-2	yes	yes	0	0	0	13	0													1				14.125	14.125	2	0.0040177	7511	DP690-13	90.108	33.379			0.59132	0.68772	NaN	1	0	Median	24857000	14219000	10638000	11928	1268	11111	23142	56024;56025	56024		2	9606
QVLLSAAEAAEVILR	0	1	Unmodified	1581.909	0.90900673	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	4	0				1													22.555	22.555	2	0.024184	17459	DP690-4	90.653	53.097			NaN	NaN	NaN	0	0	Median	461970	0	461970	11929	1044	11112	23143	56026	56026		1	9606
QVLVAPGNAGTACSEK	1	0	Unmodified	1600.7879	0.78790532	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	4.2	0.748			1	2	2												12.98	12.98	2	2.7597E-17	5507	DP690-5	216.84	183.65			0.83958	0.84428	11.815	3	0	Plateau	186240000	101790000	84446000	11930	559	11113	23144;23145;23146;23147;23148	56027;56028;56029;56030;56031;56032;56033;56034;56035;56036;56037	56036		11	9606
QVMVVPVGPTCDEYAQK	1	0	Oxidation (M)	1935.907	0.90703418	596	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	3	0			3														15.586	15.586	2	0.03992	9506	DP690-3	91.961	55.677			NaN	NaN	NaN	0	0	Median	2158500	0	2158500	11931	596	11114	23149;23150;23151	56038;56039;56040	56040	793	3	9606
QVPDTSVQETDR	0	1	Unmodified	1373.6423	0.64228694	1418	Q5J8M3	EMC4	ER membrane protein complex subunit 4	yes	yes	0	0	0	16	0																1	11.495	11.495	2	5.4524E-05	4028	DP690-16	128.91	90.602			0.78432	0.9144	NaN	1	0	Median	8530900	4599000	3931900	11932	1418	11115	23152	56041;56042;56043;56044	56043		4	9606
QVPICGDQPEAK	1	0	Unmodified	1340.6395	0.63945017	1455	Q658P3	STEAP3	Metalloreductase STEAP3	yes	yes	0	0	0	12.5	0.5												1	1				11.93	11.93	2	0.0015809	4527	DP690-13	99.283	99.283			0.55877	0.65941	11.65	2	0	Median	64722000	41832000	22890000	11933	1455	11116	23153;23154	56045;56046;56047;56048;56049	56048		5	9606
QVPVGPDGLPLLDGGPPLGPFADGALDR	0	1	Unmodified	2739.4232	0.42318003	69	O00192	ARVCF	Armadillo repeat protein deleted in velo-cardio-facial syndrome	yes	yes	0	0	0	11	0											1						23.839	23.839	2	7.4765E-06	21458	DP690-11	100.92	68.185			NaN	NaN	NaN	0	0	Median	2196100	2196100	0	11934	69	11117	23155	56050	56050		1	9606
QVQGSEISSIDEFCR	0	1	Unmodified	1753.7941	0.79411291	2366	Q9UK41	VPS28	Vacuolar protein sorting-associated protein 28 homolog	yes	yes	0	0	0	15	0															1		17.117	17.117	2	1.4722E-05	11676	DP690-15	145.28	99.622			0.96585	1.1164	NaN	1	0	Median	12220000	6382600	5837300	11935	2366	11118	23156	56051;56052;56053;56054	56053		4	9606
QVQPEGPYR	0	1	Unmodified	1072.5302	0.53015772	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														11.183	11.183	2	4.8389E-05	3621	DP690-3	176.41	104.7			0.94391	1.0197	31.759	2	0	Median	123250000	66046000	57200000	11936	789	11119	23157;23158	56055;56056;56057;56058;56059;56060;56061;56062;56063	56060		9	9606
QVQSLTCEVDALK	1	0	Unmodified	1489.7446	0.74464352	424	P08670	VIM	Vimentin	yes	yes	0	0	0	11.6	3.93				1								1	1	1	1		17.086	17.086	2	3.9317E-08	11542	DP690-13	199.68	113.81			0.87805	0.90844	30.737	4	0	Median	1828599999.9999998	968880000	859720000	11937	424	11120	23159;23160;23161;23162;23163	56064;56065;56066;56067;56068;56069;56070;56071;56072;56073;56074;56075;56076;56077;56078;56079;56080;56081;56082	56070		19	9606
QVQSLTCEVDALKGTNESLER	1	1	Unmodified	2376.1591	0.15910278	424	P08670	VIM	Vimentin	yes	yes	0	0	1	10.8	3.43				1								2	2				17.275	17.275	2;3	1.1429000000000001E-54	12257	DP690-12	260.96	201.81			1.0554	0.87842	34.163	4	0	Linear	1595299999.9999998	845460000	749800000	11938	424	11121	23164;23165;23166;23167;23168	56083;56084;56085;56086;56087;56088;56089;56090;56091;56092;56093;56094;56095;56096;56097;56098;56099;56100;56101	56087		19	9606
QVQSQAHGLQMR	0	1	Unmodified	1381.6885	0.68846605	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							10.564	10.564	3	0.01226	3069	DP690-10	65.395	36.332			0.6896	0.82202	NaN	1	0	Median	218960000	129640000	89317000	11939	1285	11122	23169	56102	56102		1	9606
QVQTLQDELQK	1	0	Unmodified	1328.6936	0.69359423	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								14.482	14.482	2	0.00019772	7830	DP690-9	169.65	138.02			0.83395	1.0678	NaN	1	0	Median	13466000	6304600	7161000	11940	2411	11123	23170	56103;56104	56103		2	9606
QVQVALETAQR	0	1	Unmodified	1241.6728	0.67279921	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	7.8	2.93		1							3	1							13.445	13.445	2	4.5843E-06	6428	DP690-9	195.57	146.48			0.87866	0.99273	10.357	3	0	Plateau	582550000	308180000	274380000	11941	1319	11124	23171;23172;23173;23174;23175	56105;56106;56107;56108;56109;56110;56111;56112;56113;56114;56115;56116;56117;56118	56116		14	9606
QVSDDLTER	0	1	Unmodified	1061.4989	0.49891717	660	P35232	PHB	Prohibitin	yes	yes	0	0	0	15	0															1		12.036	12.036	2	1.1943E-05	4715	DP690-15	204.62	131.01			0.83271	0.91809	NaN	1	0	Median	105930000	58056000	47872000	11942	660	11125	23176	56119;56120;56121;56122	56119		4	9606
QVSDLISVLR	0	1	Unmodified	1128.6503	0.65027285	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	10	3.29				1					1			2	1				19.516	19.516	2	3.0409E-05	14273	DP690-9	181.41	106.19			0.85138	1.0036	16.757	4	0	Median	1141900000	615140000	526730000	11943	517	11126	23177;23178;23179;23180;23181	56123;56124;56125;56126;56127;56128;56129;56130;56131;56132;56133;56134;56135;56136;56137;56138;56139	56136		17	9606
QVSSHIQVLAR	0	1	Unmodified	1236.6939	0.693869	608	P28347;Q15561;Q99594;Q15562	TEAD1;TEAD4;TEAD3;TEAD2	Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-3;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4	yes	no	0	0	0	13	0													1				12.214	12.214	3	3.7645E-05	4879	DP690-13	126.03	93.867			0.84531	1.0164	NaN	1	0	Median	86850000	50079000	36771000	11944	608	11127	23182	56140;56141;56142;56143	56140		4	9606
QVSSPKPQIIYGAR	1	1	Unmodified	1542.8518	0.85182621	2062	Q9C035	TRIM5	Tripartite motif-containing protein 5	yes	yes	0	0	1	4	0				1													13.151	13.151	3	0.0087664	6100	DP690-4	68.463	36.8			0.7521	0.85779	NaN	1	0	Median	12798000	8080800	4717500	11945	2062	11128	23183	56144	56144		1	9606
QVTITGSAASISLAQYLINAR	0	1	Unmodified	2176.1852	0.18518159	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	11.7	4.03						1								1	1		22.518	22.518	2	3.9473E-96	18712	DP690-14	402.38	366.57			0.97336	1.1685	14.47	3	0	Median	93153000	46043000	47110000	11946	1325	11129	23184;23185;23186	56145;56146;56147;56148;56149;56150;56151;56152;56153;56154;56155;56156	56147		12	9606
QVTITGSAASISLAQYLINVR	0	1	Unmodified	2204.2165	0.21648172	1326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	14.5	0.5														1	1		22.967	22.967	2	5.321E-15	18241	DP690-15	173.03	173.03			1.0164	1.19	NaN	1	0	Median	2564100	1214900	1349200	11947	1326	11130	23187;23188	56157;56158;56159;56160;56161	56161		5	9606
QVTQEEGQQLAR	0	1	Unmodified	1385.6899	0.68990583	961	P62070	RRAS2	Ras-related protein R-Ras2	yes	yes	0	0	0	15	0															1		11.32	11.32	2	0.00020797	3890	DP690-15	150.81	100.77			NaN	NaN	NaN	0	0	Median	9641500	0	9641500	11948	961	11131	23189	56162;56163;56164;56165	56163		4	9606
QVTQLAIDTEER	0	1	Unmodified	1401.71	0.70997257	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	10	0										1							14.819	14.819	2	0.00010147	9339	DP690-10	176.95	145.45			1.005	1.2437	NaN	1	0	Median	109080000	50643000	58437000	11949	1111	11132	23190	56166;56167;56168	56166		3	9606
QVVEEPSPQLPADR	0	1	Unmodified	1563.7893	0.78928553	755	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	0	0	6	0						1											14.526	14.526	2	3.6542E-09	7656	DP690-6	218.62	182.97			0.75519	0.86432	NaN	1	0	Median	13278000	8015000	5262600	11950	755	11133	23191	56169;56170;56171;56172;56173	56173		5	9606
QVVESAYEVIK	1	0	Unmodified	1263.6711	0.67106787	352	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	6	0						1											15.855	15.855	2	0.0019635	9124	DP690-6	111.65	93.743			1.5238	1.7276	NaN	1	0	Median	19782000	7590800	12191000	11951	352	11134	23192	56174;56175;56176;56177	56174		4	9606
QVVNIPSFIVR	0	1	Unmodified	1270.7398	0.73975656	760	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	11	4							1								1		19.69	19.69	2	9.8828E-05	14804	DP690-15	152.06	118.87			0.9132	1.0332	16.76	2	0	Median	114510000	61385000	53130000	11952	760	11135	23193;23194	56178;56179;56180;56181;56182;56183;56184;56185	56182		8	9606
QVVQATAEQMR	0	1	Oxidation (M)	1275.6241	0.62413446	1439	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	1	0	3	0			1														10.437	10.437	2	0.060029	2672	DP690-3	66.92	40.857			0.80309	0.91158	NaN	1	0	Median	11056000	5515900	5539700	11953	1439	11136	23195	56186	56186		1	9606
QVVQGLLSETYLEAHR	0	1	Unmodified	1841.9636	0.9635615	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	11	0											1						17.812	17.812	3	2.2125E-07	13485	DP690-11	148.18	82.805			0.9205	1.0772	NaN	1	0	Median	153640000	76362000	77281000	11954	653	11137	23196	56187;56188;56189;56190	56187		4	9606
QVWGLNFGSK	1	0	Unmodified	1134.5822	0.58219329	821	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	13	0													1				18.556	18.556	2	0.0028442	13585	DP690-13	96.665	96.665			1.0022	1.1607	NaN	1	0	Median	42694000	19642000	23053000	11955	821	11138	23197	56191	56191		1	9606
QVYKGEEATFQISGLQTNTDYR	1	1	Unmodified	2547.2241	0.22414587	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	1	10	0										1							16.878	16.878	3	0.012246	12242	DP690-10	80.41	50.411			NaN	NaN	NaN	0	0	Median	0	0	0	11956	1399	11139	23198	56192	56192		1	9606
QWALEDFEIGRPLGK	1	1	Unmodified	1757.9101	0.91006937	124	O14965	AURKA	Aurora kinase A	yes	yes	0	0	1	13	0													1				20.097	20.097	3	0.02079	15622	DP690-13	56.527	35.069			0.89683	1.0902	NaN	1	0	Median	12131000	5483900	6647400	11957	124	11140	23199	56193	56193		1	9606
QWDSVVLER	0	1	Unmodified	1130.572	0.57202253	1988	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	12	0												1					13.318	13.318	3	0.052348	6621	DP690-12	66.962	0			NaN	NaN	NaN	0	0	Median	9963700	9963700	0	11958	1988	11141	23200	56194	56194		1	9606
QWHNDCFNCK	1	0	Unmodified	1407.5448	0.54483828	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	10	4						1								1			11.392	11.392	3	0.00043892	3899	DP690-14	106.88	94.117			0.9864	1.146	7.2871	2	0	Median	155590000	77728000	77863000	11959	1258	11142	23201;23202	56195;56196;56197;56198;56199;56200;56201;56202;56203;56204	56198		10	9606
QWTHKMAKR	2	1	Oxidation (M)	1200.6186	0.61859557	2566				yes	yes	0	1	2	8	0								1									15.641	15.641	2	0.041732	8867	DP690-8	57.281	57.281	+		0.25894	0.27699	NaN	1	0	Median	5563300	4075100	1488200	11960	2566	11143	23203	56205	56205	2983	1	9606
QYASYEFVQR	0	1	Unmodified	1289.6041	0.60405094	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	2	0		1															15.251	15.251	2	0.04394	8057	DP690-2	66.27	28.574			1.0512	1.0934	NaN	1	0	Median	4799500	2392700	2406800	11961	1264	11144	23204	56206;56207	56207		2	9606
QYDIDDAIAK	1	0	Unmodified	1150.5506	0.55061839	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								15.665	15.665	2	0.0030435	9320	DP690-9	95.358	65.04			0.80882	0.92991	NaN	1	0	Median	74476000	40333000	34143000	11962	1319	11145	23205	56208;56209;56210;56211	56208		4	9606
QYEEFYVGLEGSFGSK	1	0	Unmodified	1838.8363	0.8362953	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	11	0											1						20.398	20.398	2	0.00215	17194	DP690-11	126.63	88.952			NaN	NaN	NaN	0	0	Median	15226000	15226000	0	11963	581	11146	23206	56212	56212		1	9606
QYEQQTYQVIPEVIK	1	0	Unmodified	1864.9571	0.95707914	2429	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	12	0												1					18.316	18.316	2	1.2392E-06	13672	DP690-12	218.94	218.94			0.86971	1.0453	NaN	1	0	Median	22969000	10898000	12071000	11964	2429	11147	23207	56213;56214;56215;56216	56216		4	9606
QYGITGENVR	0	1	Unmodified	1135.5622	0.56218613	1883	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	0	12	0												3					13.192	13.192	2	0.0095843	6471	DP690-12	109.48	58.143			NaN	NaN	NaN	0	0	Median	33296000	0	33296000	11965	1883	11148	23208;23209;23210	56217;56218;56219;56220	56218		4	9606
QYGNEVFLAK	1	0	Unmodified	1167.5924	0.59242362	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	4	0				1													15.414	15.414	2	9.1261E-05	9074	DP690-4	153.08	88.429			1.4997	1.6223	NaN	1	0	Median	28764000	9900000	18864000	11966	826	11149	23211	56221;56222	56221		2	9606
QYIEFVADR	0	1	Unmodified	1139.5611	0.56112349	1535;635	Q7LG56;P31350	RRM2B;RRM2	Ribonucleoside-diphosphate reductase subunit M2 B;Ribonucleoside-diphosphate reductase subunit M2	no	no	0	0	0	6	0						1											16.513	16.513	2	0.0040205	9939	DP690-6	103.74	64.947			0.8173	0.90249	NaN	1	0	Median	39282000	20916000	18366000	11967	1535;635	11150	23212	56223;56224;56225;56226	56223		4	9606
QYINAIKDYELQLVTYK	2	0	Unmodified	2101.1096	0.10955703	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								19.529	19.529	3	7.2449E-05	14329	DP690-9	116.78	116.78			0.82201	0.95457	NaN	1	0	Median	40044000	22308000	17736000	11968	1319	11151	23213	56227;56228	56227		2	9606
QYLINSQCCSLCQPGQK	1	0	Unmodified	2082.9285	0.92851468	588	P25942	CD40	Tumor necrosis factor receptor superfamily member 5	yes	yes	0	0	0	13.7	0.471													1	2			15.354	15.354	2	1.2885E-47	9346	DP690-14	293.31	244.12			0.82476	0.95962	NaN	1	0	Median	33520000	21720000	11800000	11969	588	11152	23214;23215;23216	56229;56230;56231;56232;56233;56234	56233		6	9606
QYNGVPLDGRPMNIQLVTSQIDAQR	0	2	Oxidation (M)	2828.4239	0.42392509	1574	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	1	1	15	0															1		17.871	17.871	3	0.00027053	12522	DP690-15	89.365	70.805			0.61253	0.66448	NaN	1	0	Median	13081000	8194100	4887200	11970	1574	11153	23217	56235;56236;56237	56236	2242	3	9606
QYPISLVLAPTR	0	1	Unmodified	1356.7765	0.776536	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	8	3.41				2					1		1	1					19.599	19.599	2	0.00032506	16099	DP690-11	117.71	96.707			0.75326	0.86077	14.618	4	0	Median	395390000	224170000	171220000	11971	96	11154	23218;23219;23220;23221;23222	56238;56239;56240;56241;56242;56243;56244;56245;56246;56247;56248;56249;56250;56251	56240		14	9606
QYSHHSSVQDAVSQLDSELMDITK	1	0	Oxidation (M)	2733.2552	0.25518801	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	1	0	9.67	0.471									1	2							20.769	20.769	3;4	9.4069E-07	17722	DP690-10	132.66	112.68			0.94986	1.1269	24.064	3	0	Plateau	337670000	164780000	172890000	11972	272	11155	23223;23224;23225	56252;56253;56254;56255;56256;56257	56252	296	6	9606
QYTGINAISK	1	0	Unmodified	1093.5768	0.57677356	940	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	13	0													1				13.467	13.467	2	0.031058	6607	DP690-13	70.552	13.831			1.0671	1.208	NaN	1	0	Median	132580000	65373000	67205000	11973	940	11156	23226	56258	56258		1	9606
QYYTLLNQAPDMLHR	0	1	Oxidation (M)	1877.9094	0.90941744	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	1	0	12	0												1					16.53	16.53	3	0.048076	11224	DP690-12	49.216	17.44			0.88234	1.0085	NaN	1	0	Median	154630000	82307000	72325000	11974	1196	11157	23227	56259;56260	56260		2	9606
QYYTLLNQAPDMLHR	0	1	Unmodified	1861.9145	0.91450282	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	12	0												2					18.223	18.223	2;3	0.00012314	13497	DP690-12	109.84	94.443			0.87706	1.0138	NaN	1	0	Median	127230000	66222000	61007000	11975	1196	11157	23228;23229	56261;56262;56263;56264	56261		4	9606
RAAEEEPSTSATVPMSK	1	1	Oxidation (M)	1805.8465	0.84654241	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	1	1	12	0												2					10.527	10.527	3	0.0001166	2962	DP690-12	105.02	86.188			0.62398	0.80453	NaN	1	0	Median	25116000	15518000	9598000	11976	1200	11158	23230;23231	56265;56266;56267	56266	1851	3	9606
RAASAATAAPTATPAAQESGTIPK	1	1	Unmodified	2238.1604	0.16042341	61	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	1	8	4				1								1					12.36	12.36	3	1.456E-15	5260	DP690-12	162.82	148.46			0.85035	1.016	49.291	2	0	Median	46965000	27968000	18997000	11977	61	11159	23232;23233	56268;56269;56270;56271	56268		4	9606
RADLNQGIGEPQSPSR	0	2	Unmodified	1723.8602	0.86015906	1830	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	1	12.3	3.77							1								2		11.958	11.958	3	1.8365E-06	4567	DP690-7	130.64	101.56			0.63192	0.66666	7.6858	2	0	Median	97757000	55046000	42711000	11978	1830	11160	23234;23235;23236	56272;56273;56274;56275;56276;56277	56274		5	9606
RADLNQGIGEPQSPSRR	0	3	Unmodified	1879.9613	0.96127009	1830	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	2	7	0							1										10.667	10.667	3	0.024895	3125	DP690-7	55.322	29.03			NaN	NaN	NaN	0	0	Median	9603500	5488100	4115400	11979	1830	11161	23237	56278	56278		1	9606
RAEDGSVIDYELIDQDAR	0	2	Unmodified	2063.976	0.97597668	404	P07355	ANXA2	Annexin A2	yes	yes	0	0	1	12.6	3.12		1				3			2	1	1			25	2	1	22.314	22.314	2;3	2.8429E-137	11711	DP690-9	347.52	255.27			0.80947	0.93043	15.397	24	0	Median	17530000000	9367900000	8161699999.999999	11980	404	11162	23238;23239;23240;23241;23242;23243;23244;23245;23246;23247;23248;23249;23250;23251;23252;23253;23254;23255;23256;23257;23258;23259;23260;23261;23262;23263;23264;23265;23266;23267;23268;23269;23270;23271;23272;23273	56279;56280;56281;56282;56283;56284;56285;56286;56287;56288;56289;56290;56291;56292;56293;56294;56295;56296;56297;56298;56299;56300;56301;56302;56303;56304;56305;56306;56307;56308;56309;56310;56311;56312;56313;56314;56315;56316;56317;56318;56319;56320;56321;56322;56323;56324;56325;56326;56327;56328;56329;56330;56331;56332;56333;56334;56335;56336;56337;56338;56339;56340;56341;56342;56343;56344;56345;56346;56347;56348;56349;56350;56351;56352;56353;56354;56355;56356;56357;56358;56359;56360;56361;56362	56362		83	9606
RAEDGSVIDYELIDQDARDLYDAGVK	1	2	Unmodified	2925.3992	0.39920971	404	P07355	ANXA2	Annexin A2	yes	yes	0	0	2	12.4	3.2						1								4			20.073	20.073	3;4	1.6317E-46	16452	DP690-14	244.68	208.01			0.75218	0.84179	9.167	5	0	Median	1150800000	631680000	519070000	11981	404	11163	23274;23275;23276;23277;23278	56363;56364;56365;56366;56367;56368;56369;56370;56371;56372;56373;56374	56369		11	9606
RAEFTVETR	0	2	Unmodified	1107.5673	0.5672715	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	7.67	4.03		1								1	1						11.269	11.269	2	0.001598	4236	DP690-10	137.46	52.891			0.83724	0.99719	1.5566	3	0	Median	1096700000	593610000	503110000	11982	549	11164	23279;23280;23281	56375;56376;56377;56378;56379;56380;56381;56382	56377		8	9606
RAFVHWYVGEGMEEGEFSEAR	0	2	Oxidation (M)	2501.107	0.10700763	1032;1521;1977;452;1033	P0DPH7;P0DPH8;P68363;Q71U36;Q9BQE3;P68366	TUBA1B;TUBA1A;TUBA1C;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain	no	no	0	1	1	5	0					1												16.152	16.152	4	3.0511E-05	9454	DP690-5	116.73	106.95			1.0585	1.0454	NaN	1	0	Median	65542000	30227000	35315000	11983	452;1032;1521;1977;1033	11165	23282	56383;56384;56385;56386	56384	520	4	9606
RAGELTEDEVER	0	2	Unmodified	1402.6688	0.66883604	973	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	1	12	4								2								2	11.223	11.223	2;3	3.9117E-12	3849	DP690-16	284.1	244.48			0.92044	0.97248	1.3047	4	0	Median	281020000	146760000	134260000	11984	973	11166	23283;23284;23285;23286	56387;56388;56389;56390;56391;56392;56393;56394;56395;56396;56397;56398;56399;56400;56401;56402	56389		16	9606
RAGGEESQFEMDI	0	1	Oxidation (M)	1483.6249	0.62492232	1220	Q13541	EIF4EBP1	Eukaryotic translation initiation factor 4E-binding protein 1	yes	yes	0	1	1	8	0								1									15.852	15.852	2	0.045438	9084	DP690-8	68.786	61.136			0.81087	0.96953	NaN	1	0	Median	4064700	2305500	1759100	11985	1220	11167	23287	56403	56403		1	9606
RAIVHDNKDGTYAVTYIPDK	2	1	Unmodified	2275.1597	0.15969512	250	O75369	FLNB	Filamin-B	yes	yes	0	0	2	10	0										1							13.422	13.422	4	0.0096077	7165	DP690-10	65.454	45.542			0.72617	0.82865	NaN	1	0	Median	256080000	134990000	121090000	11986	250	11168	23288	56404;56405	56405		2	9606
RAPFDLFENK	1	1	Unmodified	1235.6299	0.62987176	416	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	1	3	0			3														17.135	17.135	2	0.0013676	11270	DP690-3	114.97	72.778			0.85324	0.94631	NaN	1	0	Median	149940000	79404000	70533000	11987	416	11169	23289;23290;23291	56406;56407;56408;56409	56406		4	9606
RAPFDLFENKK	2	1	Unmodified	1363.7248	0.72483478	416	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	2	3	0			1														14.799	14.799	3	0.0012302	8216	DP690-3	94.538	94.538			0.84707	0.87203	NaN	1	0	Median	78400000	40827000	37573000	11988	416	11170	23292	56410;56411;56412;56413	56411		4	9606
RAPSVANVGSHCDLSLK	1	1	Unmodified	1809.9156	0.91556545	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10	0										2							12.89	12.89	3;4	8.3827E-08	6399	DP690-10	157.7	126.62			0.67379	0.78336	12.131	2	0	Median	526190000	321550000	204640000	11989	549	11171	23293;23294	56414;56415;56416	56415		3	9606
RAQATAQDPVFQK	1	1	Unmodified	1458.7579	0.75792582	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	1	9	0									1								10.865	10.865	3	0.040183	3234	DP690-9	48.467	34.383			0.57978	0.67244	NaN	1	0	Median	4274000	2425600	1848400	11990	2483	11172	23295	56417	56417		1	9606
RAQEAEEAGAALRTAR	0	3	Unmodified	1698.8761	0.87614348	1313	Q15027	ACAP1	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1	yes	yes	0	0	2	15	0															1		11.611	11.611	3	0.0013022	4152	DP690-15	84.759	47.396			0.80211	0.84233	NaN	1	0	Median	174540000	90924000	83619000	11991	1313	11173	23296	56418;56419	56419		2	9606
RAQEILSQLPIK	1	1	Unmodified	1394.8245	0.82454882	675	P35754	GLRX	Glutaredoxin-1	yes	yes	0	0	1	8	0								1									16.134	16.134	2	0.01758	9324	DP690-8	77.744	50.629			0.72999	0.84878	NaN	1	0	Median	2233800	1227600	1006300	11992	675	11174	23297	56420	56420		1	9606
RASHTAPQVLFSHR	0	2	Unmodified	1605.8488	0.84880651	139	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	1	14	0														1			10.495	10.495	4	0.0034153	2764	DP690-14	72.175	72.175			0.81906	0.96253	NaN	1	0	Median	63438000	32691000	30747000	11993	139	11175	23298	56421;56422	56421		2	9606
RASNLLYGQLK	1	1	Unmodified	1261.7143	0.71427009	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	1	11	0											1						13.793	13.793	2	0.08409	7657	DP690-11	66.056	21.631			0.85616	1.0332	NaN	1	0	Median	63552000	33739000	29812000	11994	1613	11176	23299	56423	56423		1	9606
RATIQFHQPQR	0	2	Unmodified	1380.7375	0.73746515	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	1	13	0													1				10.452	10.452	3	0.00015469	2719	DP690-13	107.09	85.417			0.64791	0.74394	NaN	1	0	Median	56546000	34235000	22312000	11995	1597	11177	23300	56424;56425;56426	56425		3	9606
RCDIIIISGR	0	2	Unmodified	1201.6601	0.66012603	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	1	10	0										1							14.364	14.364	2	0.023581	8615	DP690-10	82.489	14.106			0.87118	1.0376	NaN	1	0	Median	139930000	69167000	70759000	11996	1071	11178	23301	56427	56427		1	9606
RCLYASVLTAQPR	0	2	Unmodified	1533.8086	0.80858118	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	3	0			1														14.799	14.799	3	0.013608	8404	DP690-3	84.892	51.664			NaN	NaN	NaN	0	0	Median	16357000	16357000	0	11997	483	11179	23302	56428;56429	56428		2	9606
RCSYIAESDAAVK	1	1	Unmodified	1468.698	0.69802768	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	1	4	0				2													11.878	11.878	2;3	0.0091452	4424	DP690-4	130.1	84.94			NaN	NaN	NaN	0	0	Median	33256000	0	33256000	11998	1784	11180	23303;23304	56430;56431;56432;56433	56431		4	9606
RDDDEPGPWTK	1	1	Unmodified	1314.584	0.58404378	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	1	11	0											1						12.109	12.109	2	0.00084614	5203	DP690-11	117.09	74.982			0.63337	0.74888	NaN	1	0	Median	85146000	50755000	34391000	11999	1932	11181	23305	56434;56435;56436;56437	56437		4	9606
RDDGTGQLLLPLSDAR	0	2	Unmodified	1725.901	0.90096124	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.8	0.748									2	2	1						17.774	17.774	2;3	0.00094678	12072	DP690-9	80.508	65.477			0.57695	0.66693	14.638	2	0	Median	338500000	201380000	137120000	12000	1319	11182	23306;23307;23308;23309;23310	56438;56439;56440;56441;56442;56443;56444;56445;56446;56447	56445		10	9606
RDDLESLGYVLMYFNLGSLPWQGLK	1	1	Unmodified	2913.4735	0.47350104	783;798	P49674;P48730	CSNK1E;CSNK1D	Casein kinase I isoform epsilon;Casein kinase I isoform delta	no	no	0	0	1	13	0													1				27.305	27.305	3	0.0071435	23485	DP690-13	71.091	44.674			NaN	NaN	NaN	0	0	Median	1024400	1024400	0	12001	798;783	11183	23311	56448	56448		1	9606
RDEFEFLEK	1	1	Unmodified	1211.5823	0.58225287	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	1	9.2	2.79				1					1	1	1	1					16.383	16.383	2	0.0016503	11442	DP690-11	135.71	80.341			0.83581	0.97618	6.3917	5	0	Median	715750000	378600000	337150000	12002	1269	11184	23312;23313;23314;23315;23316	56449;56450;56451;56452;56453;56454;56455;56456;56457;56458;56459;56460;56461;56462;56463	56452		15	9606
RDELTLEGIK	1	1	Unmodified	1172.6401	0.6401021	696	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	1	13	0													1				14.721	14.721	2	0.00013352	8311	DP690-13	200.71	121.94			0.8465	0.93505	NaN	1	0	Median	143760000	73635000	70128000	12003	696	11185	23317	56464;56465;56466;56467	56465		4	9606
RDEQPSGSVETGFEDK	1	1	Unmodified	1779.7911	0.79113602	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	1	12	0												2					12.613	12.613	2;3	1.5383E-08	5621	DP690-12	163.34	133.62			0.7132	0.86598	21.109	2	0	Median	140000000	84487000	55512000	12004	2240	11186	23318;23319	56468;56469;56470;56471;56472;56473;56474	56470		7	9606
RDEQPSGSVETGFEDKIPK	2	1	Unmodified	2118.0229	0.022926872	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	2	12	0												2					14.441	14.441	3	0.00036821	8260	DP690-12	93.029	72.641			0.74683	0.82422	NaN	1	0	Median	56675000	24414000	32262000	12005	2240	11187	23320;23321	56475;56476;56477;56478	56477		4	9606
RDGWPAMGIHGDK	1	1	Oxidation (M)	1454.6725	0.67248163	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	1	12	0												1					10.78	10.78	3	0.03717	3219	DP690-12	47.506	13.616			0.71375	0.85286	NaN	1	0	Median	78454000	49994000	28460000	12006	517	11188	23322	56479;56480	56479	652	2	9606
RDLLFQALGR	0	2	Unmodified	1187.6775	0.67749065	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	1	12	0												1					17.352	17.352	2	0.0005044	12405	DP690-12	126.39	92.201			0.95238	1.0799	NaN	1	0	Median	99068000	52661000	46407000	12007	2210	11189	23323	56481;56482	56481		2	9606
RDNYVPEVSALDQEIIEVDPDTK	1	1	Unmodified	2644.2868	0.28680571	425	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	1	16	0																1	20.446	20.446	3	8.4152E-07	15168	DP690-16	135.55	121.39			0.69042	0.79435	NaN	1	0	Median	9840600	6167400	3673200	12008	425	11190	23324	56483;56484	56483		2	9606
RDNYVPEVSALDQEIIEVDPDTKEMLK	2	1	Oxidation (M)	3161.5438	0.54382503	425	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	1	2	16	0																2	19.655	19.655	3;4	1.0038E-05	14333	DP690-16	117.96	104.88			0.7098	0.78412	14.606	2	0	Median	68161000	37618000	30543000	12009	425	11191	23325;23326	56485;56486;56487;56488;56489;56490;56491;56492;56493;56494;56495	56492	489	11	9606
RDPHLACVAYER	0	2	Unmodified	1485.7147	0.7146808	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	1	7.67	4.03		1								1	1						11.53	11.53	3	0.0024121	4553	DP690-10	76.728	69.358			0.91213	1.0864	9.489	3	0	Median	190130000	116510000	73625000	12010	1075	11192	23327;23328;23329	56496;56497;56498;56499;56500;56501;56502	56496		7	9606
RDTVEVALEDKGDSTFR	1	2	Unmodified	1936.949	0.94903365	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	2	5.5	3.5		1							1								14.544	14.544	3	1.4045E-07	7146	DP690-2	148.36	136.44			1.0374	1.1215	10.278	2	0	Median	31271000	14598000	16672000	12011	1270	11193	23330;23331	56503;56504	56503		1	9606
RDWYVYAFLSSLPWVGK	1	1	Unmodified	2086.0676	0.06763264	1143	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	1	5	0					1												19.857	19.857	4	0.045391	14186	DP690-5	38.661	5.3477			1.0747	1.1521	NaN	1	0	Median	59925000	29990000	29935000	12012	1143	11194	23332	56505	56505		1	9606
RDYDDMSPR	0	2	Unmodified	1153.4822	0.48222124	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	12	0												1					10.947	10.947	2	0.00088373	3418	DP690-12	155.06	109.98			0.74343	0.84294	NaN	1	0	Median	71176000	38386000	32791000	12013	959	11195	23333	56506;56507	56507		2	9606
RDYLHYIR	0	2	Unmodified	1134.5934	0.59342667	976	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	13	3.56								1							1	1	13.268	13.268	3	0.01454	6247	DP690-16	97.965	64.926			0.92066	0.98563	16.782	2	0	Median	48022000	24705000	23317000	12014	976	11196	23334;23335;23336	56508;56509;56510	56509		1	9606
RECPSDECGAGVFMASHFDR	0	2	Oxidation (M)	2342.9467	0.94668394	1009	P62979	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	yes	0	1	1	16	0																1	13.908	13.908	3	3.4563E-05	7184	DP690-16	112.58	104.29			0.80248	0.84784	NaN	1	0	Median	17083000	9325700	7757000	12015	1009	11197	23337	56511;56512	56512	1534	2	9606
REDGGYTFTATPEDFPK	1	1	Unmodified	1929.8745	0.87447172	2489	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	1	13	0													1				16.554	16.554	3	5.878E-05	10989	DP690-13	115.2	99.99			0.58584	0.70123	NaN	1	0	Median	41236000	23141000	18094000	12016	2489	11198	23338	56513;56514	56514		2	9606
REDLVVAPAGITLK	1	1	Unmodified	1480.8613	0.86132826	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	1	4	0				2													16.66	16.66	2;3	0.00065763	10680	DP690-4	98	69.918			1.0782	1.2298	10.495	2	0	Median	54621000	27282000	27340000	12017	474	11199	23339;23340	56515;56516;56517;56518;56519;56520;56521	56520		7	9606
REEEEFNTGPLSVLTQSVK	1	1	Unmodified	2162.0855	0.085527128	980	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	1	16	0																1	19.435	19.435	3	0.00058663	13972	DP690-16	81.016	50.878			0.77107	0.89581	NaN	1	0	Median	7494200	4199800	3294400	12018	980	11200	23341	56522;56523;56524;56525	56523		4	9606
REELITNWEQIR	0	2	Unmodified	1585.8213	0.82125436	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	1	10	0										1							16.967	16.967	3	0.024092	12364	DP690-10	103.14	42.504			NaN	NaN	NaN	0	0	Median	0	0	0	12019	1236	11201	23342	56526	56526		1	9606
REESPMDVDQPSPSAQDTQSIASDGTPQGEK	1	1	Oxidation (M)	3302.4481	0.44808675	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	1	1	2	0		1															13.477	13.477	3	1.2646E-07	5946	DP690-2	106.42	90.56			NaN	NaN	NaN	0	0	Median	2478500	2478500	0	12020	1555	11202	23343	56527;56528;56529	56527	2232	3	9606
REIGILTTNK	1	1	Unmodified	1143.6612	0.66117189	1636	Q8IZP0;Q9NYB9	ABI1;ABI2	Abl interactor 1;Abl interactor 2	yes	no	0	0	1	4	0				1													12.307	12.307	2	0.045095	5022	DP690-4	73.985	35.193			0.77951	0.88905	NaN	1	0	Median	7087700	3773300	3314400	12021	1636	11203	23344	56530	56530		1	9606
RELHGQNPVVTPCNK	1	1	Unmodified	1747.8788	0.87878601	1363	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	1	12	0												2					10.309	10.309	3;4	0.00021638	2559	DP690-12	102.39	60.394			0.65535	0.83028	10.471	2	0	Median	36822000	19860000	16962000	12022	1363	11204	23345;23346	56531;56532;56533	56531		2	9606
RENFCNIHVSLVPQPSSTGEQK	1	1	Unmodified	2526.2285	0.22851975	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	1	4	0				1													15.191	15.191	3	0.00018645	8834	DP690-4	106.47	73.098			NaN	NaN	NaN	0	0	Median	4749600	0	4749600	12023	516	11205	23347	56534	56534		1	9606
RFDDAVVQSDMK	1	1	Oxidation (M)	1425.6558	0.65582851	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	7.83	3.85				3							1	2					12.081	12.081	2;3	0.0015509	4738	DP690-12	107.11	33.213			1.6827	1.9662	44.204	6	0	Median	513980000	211780000	302200000	12024	463	11206	23348;23349;23350;23351;23352;23353	56535;56536;56537;56538;56539;56540;56541;56542;56543	56539	542	7	9606
RFDDAVVQSDMK	1	1	Unmodified	1409.6609	0.66091389	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	9.33	3.77				1								2					13.646	13.646	2;3	3.4673E-08	7009	DP690-12	211.63	164.44			0.78218	0.91832	7.8994	2	0	Median	224930000	125610000	99320000	12025	463	11206	23354;23355;23356	56544;56545;56546;56547;56548	56544		5	9606
RFDEILEASDGIMVAR	0	2	Oxidation (M)	1836.904	0.90399771	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	1	1	4	0				2													17.951	17.951	2;3	5.5991E-05	12313	DP690-4	115.66	93.186			1.0182	1.0669	NaN	1	0	Median	46186000	20717000	25469000	12026	488	11207	23357;23358	56549;56550;56551;56552;56553	56551	611	5	9606
RFGVPVIADGGIQNVGHIAK	1	1	Unmodified	2047.1327	0.13269251	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	1	4	0				1													16.682	16.682	3	6.0117E-05	10662	DP690-4	108.45	95.906			1.1057	1.2611	NaN	1	0	Median	30063000	13872000	16191000	12027	474	11208	23359	56554;56555;56556;56557	56554		4	9606
RFPSSFEEIEILWSQFLK	1	1	Unmodified	2255.1627	0.16265524	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0										2							25.962	25.962	3	3.8195E-06	24121	DP690-10	122.44	111.76			0.68923	0.74954	31.483	2	0	Median	7277500	3924500	3353000	12028	1319	11209	23360;23361	56558;56559;56560;56561;56562;56563;56564;56565	56560		8	9606
RFPVAPLIPYPLITK	1	1	Unmodified	1724.0389	0.038898694	803	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	1	11	0											1						20.363	20.363	3	0.0069983	17149	DP690-11	64.52	62.433			0.60228	0.72231	NaN	1	0	Median	69488000	44256000	25232000	12029	803	11210	23362	56566;56567;56568;56569	56567		4	9606
RFSDIQIR	0	2	Unmodified	1033.5669	0.56687757	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	11	0											1						13.156	13.156	2	0.010327	6627	DP690-11	131.22	38.752			NaN	NaN	NaN	0	0	Median	131730000	131730000	0	12030	470	11211	23363	56570;56571	56570		2	9606
RFYEQMNGPVAGASR	0	2	Oxidation (M)	1697.7944	0.79438768	617	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	1	1	14	0														1			11.592	11.592	3	0.035074	4190	DP690-14	46.249	23.757			0.74701	0.87786	NaN	1	0	Median	29430000	17162000	12268000	12031	617	11212	23364	56572	56572	852	1	9606
RFYEQMNGPVAGASR	0	2	Unmodified	1681.7995	0.79947306	617	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	1	14	0														1			13.307	13.307	3	0.00022953	6538	DP690-14	101.53	101.53			0.69597	0.81788	NaN	1	0	Median	37911000	24157000	13754000	12032	617	11212	23365	56573;56574	56573		2	9606
RGAYGGGYGGYDDYNGYNDGYGFGSDR	0	2	Unmodified	2872.1386	0.13857834	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	1	13	0													1				16.696	16.696	3	3.6178E-10	11199	DP690-13	110.03	95.796			NaN	NaN	NaN	0	0	Median	13855000	13855000	0	12033	639	11213	23366	56575;56576	56575		2	9606
RGDALIEMESEQDVQK	1	1	Oxidation (M)	1862.868	0.86800613	1165	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	1	1	13	0													3				13.031	13.031	2;3	4.4045E-05	6019	DP690-13	118.23	99.06			0.87909	1.0721	NaN	1	0	Median	48479000	16448000	32030000	12034	1165	11214	23367;23368;23369	56577;56578;56579;56580	56578	1813	4	9606
RGDALIEMESEQDVQK	1	1	Unmodified	1846.8731	0.87309151	1165	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	1	13	0													1				14.793	14.793	3	0.00031225	8499	DP690-13	92.633	75.069			1.0867	1.3481	NaN	1	0	Median	21720000	10501000	11219000	12035	1165	11214	23370	56581;56582	56581		2	9606
RGDIIGVQGNPGK	1	1	Unmodified	1309.7102	0.71024735	1316	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	1	6	3.46				3								1					11.279	11.279	2;3	0.0034572	3764	DP690-4	57.804	33.294			0.97189	1.1085	29.64	4	0	Median	24515000	12415000	12101000	12036	1316	11215	23371;23372;23373;23374	56583;56584;56585;56586;56587;56588;56589;56590;56591;56592;56593	56587		11	9606
RGDINLLMLGDPGTAK	1	1	Oxidation (M)	1685.8771	0.87705468	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	1	11	0											1						17.077	17.077	3	0.0037147	12419	DP690-11	68.261	48.494			0.78677	0.87341	NaN	1	0	Median	209790000	114920000	94867000	12037	652	11216	23375	56594;56595	56594	917	2	9606
RGDLPFVVPR	0	2	Unmodified	1154.656	0.65602693	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	6	4		1								1							15.77	15.77	2	0.00096665	8596	DP690-2	120.27	76.622			0.68268	0.74459	34.859	2	0	Median	96058000	58289000	37770000	12038	668	11217	23376;23377	56596;56597;56598;56599	56598		4	9606
RGDQLLSVNGVSVEGEHHEK	1	1	Unmodified	2189.0825	0.082507436	2221	Q9NUP9;O14910	LIN7C;LIN7A	Protein lin-7 homolog C;Protein lin-7 homolog A	yes	no	0	0	1	15	0															1		12.996	12.996	4	0.00048014	6077	DP690-15	80.142	62.577			0.95877	1.0816	NaN	1	0	Median	59548000	32910000	26638000	12039	2221	11218	23378	56600;56601	56601		2	9606
RGDTVATLSER	0	2	Unmodified	1203.6208	0.62076364	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	3	0			2														10.878	10.878	2	0.0012256	3259	DP690-3	111.5	78.684			0.62795	0.64961	NaN	1	0	Median	26929000	19955000	6973200	12040	559	11219	23379;23380	56602;56603;56604	56602		3	9606
RGFEVVYMTEPIDEYCVQQLK	1	1	Oxidation (M)	2619.2349	0.23491026	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	1	3	0			2														18.432	18.432	3	0.0033541	13124	DP690-3	91.964	64.879			NaN	NaN	NaN	0	0	Median	25155000	14468000	10688000	12041	416	11220	23381;23382	56605;56606;56607;56608	56607	464	4	9606
RGFGFVTFDDHDPVDK	1	1	Unmodified	1850.8588	0.85876208	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	14	0														2			16.778	16.778	3	0.0063062	11281	DP690-14	84.403	48.677			NaN	NaN	NaN	0	0	Median	49147000	49147000	0	12042	563	11221	23383;23384	56609;56610;56611	56609		3	9606
RGLDVNKCEIAR	1	2	Unmodified	1429.746	0.74598093	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	2	13	0													1				10.823	10.823	3	4.6836E-05	3234	DP690-13	131.79	104.13			0.92288	1.036	NaN	1	0	Median	61308000	29796000	31512000	12043	2395	11222	23385	56612;56613;56614;56615	56613		4	9606
RGPCIIYNEDNGIIK	1	1	Unmodified	1760.888	0.88795372	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	13	0													1				15.331	15.331	3	0.0012467	9200	DP690-13	79.652	45.27			0.80889	0.90942	NaN	1	0	Median	109250000	66422000	42831000	12044	681	11223	23386	56616;56617	56617		2	9606
RGPFELEAFYSDPQGVPYPEAK	1	1	Unmodified	2496.1961	0.19614021	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	1	3	0			1														19.607	19.607	3	1.601E-10	14595	DP690-3	156.08	140.95			0.78571	0.87142	NaN	1	0	Median	16643000	8315100	8327600	12045	1778	11224	23387	56618;56619	56619		2	9606
RGPNYTSGYGTNSELSNPSETESER	0	2	Unmodified	2731.1958	0.19575887	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	10	3.54				1							1	1	1				13.723	13.723	3	7.7014E-46	7076	DP690-12	234.15	215.74			0.7456	0.85073	15.986	2	0	Median	345120000	198910000	146210000	12046	829	11225	23388;23389;23390;23391	56620;56621;56622;56623;56624;56625;56626;56627	56622		8	9606
RGPQLVCTGSDDGTVK	1	1	Unmodified	1688.8152	0.8151827	1839	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	1	14	0														1			11.882	11.882	3	0.0033031	4549	DP690-14	70.584	48.642			0.74509	0.92911	NaN	1	0	Median	43773000	25443000	18330000	12047	1839	11226	23392	56628;56629;56630	56629		3	9606
RGSCVTQVGLLESVYEMFR	0	2	Oxidation (M)	2246.0824	0.082372781	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	9.5	0.5									1	1							21.405	21.405	3	5.9154E-12	18580	DP690-10	168.79	144.07			0.76492	0.86913	13.54	2	0	Median	79398000	42925000	36473000	12048	1046	11227	23393;23394	56631;56632;56633;56634;56635;56636;56637	56631	1605	7	9606
RGSCVTQVGLLESVYEMFR	0	2	Unmodified	2230.0875	0.087458159	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.5	0.5									1	1							23.237	23.237	3	0.00059659	18547	DP690-9	78.088	44.957			0.98113	1.1148	51.969	2	0	Median	11376000	5941000	5435500	12049	1046	11227	23395;23396	56638;56639	56639		1	9606
RHEGSSSESVPPGTTISR	0	2	Unmodified	1882.9133	0.91331684	1485	Q6P1K2	PMF1	Polyamine-modulated factor 1	yes	yes	0	0	1	15	0															2		10.318	10.318	3;4	1.7803E-05	2686	DP690-15	122.5	91.961			0.61412	0.66619	31.527	2	0	Median	34367000	19764000	14604000	12050	1485	11228	23397;23398	56640;56641;56642;56643;56644	56642		5	9606
RHEMPPHIYAITDTAYR	0	2	Oxidation (M)	2086.0054	0.005443089	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	2	0		1															13.199	13.199	4	0.00019837	5616	DP690-2	95.236	84.862			0.95379	0.95263	NaN	1	0	Median	12076000	5866400	6209200	12051	668	11229	23399	56645;56646	56645	950	2	9606
RHPEYAVSVLLR	0	2	Unmodified	1438.8045	0.80448208	37	CON__P02769			yes	yes	0	0	1	2.33	1.25	1	1		1													14.656	14.656	3	1.0062E-07	7337	DP690-2	148.89	114.71		+	NaN	NaN	NaN	0	0	Median	194780000	194780000	0	12052	37	11230	23400;23401;23402	56647;56648;56649;56650;56651;56652	56650		6	
RHPYFYAPELLYYANK	1	1	Unmodified	2044.0207	0.020682448	37	CON__P02769			yes	yes	0	0	1	1.75	0.829	2	1	1														17.96	17.96	3;4	0.00021147	11287	DP690-2	136.39	103.4		+	NaN	NaN	NaN	0	0	Median	26742000	26742000	0	12053	37	11231	23403;23404;23405;23406	56653;56654;56655;56656;56657;56658;56659	56657		7	
RIANLQTDLSDGLR	0	2	Unmodified	1570.8427	0.84271808	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10	0										1							15.984	15.984	3	0.000156	10970	DP690-10	107.11	73.264			0.86441	1.0295	NaN	1	0	Median	500710000	248230000	252480000	12054	549	11232	23407	56660;56661	56661		2	9606
RIEHPTAGNTEAWEDTHAK	1	1	Unmodified	2162.0141	0.01409352	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	1	10	0										1							10.924	10.924	4	0.056723	3600	DP690-10	33.37	21.616			0.74639	0.93449	NaN	1	0	Median	83386000	48124000	35262000	12055	550	11233	23408	56662	56662		1	9606
RIFHTVTTTDDPVIR	0	2	Unmodified	1769.9424	0.94243213	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	1	12	0												2					13.456	13.456	3;4	0.037887	6835	DP690-12	47.217	30.603			0.70492	0.79927	7.8987	2	0	Median	90995000	57366000	33629000	12056	154	11234	23409;23410	56663;56664;56665	56663		3	9606
RIFQEPTEPK	1	1	Unmodified	1243.6561	0.65608651	635	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	1	6	0						1											12.05	12.05	2	0.0030321	4627	DP690-6	106.18	32.513			0.7261	0.81374	NaN	1	0	Median	9987500	5726300	4261100	12057	635	11235	23411	56666	56666		1	9606
RIGFDVVTLSGTR	0	2	Unmodified	1419.7834	0.78341229	1990	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	1	15	0															1		16.918	16.918	3	0.0014102	11346	DP690-15	84.468	45.888			3.799	4.1211	NaN	1	0	Median	59561000	19735000	39825000	12058	1990	11236	23412	56667;56668	56668		2	9606
RILELSGSSSEDSEK	1	1	Unmodified	1635.7952	0.79515877	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.33	0.471									2	1							12.606	12.606	2;3	1.093E-06	5308	DP690-9	190.34	150.42			0.69709	0.8085	1.9992	2	0	Median	210030000	174500000	35538000	12059	1046	11237	23413;23414;23415	56669;56670;56671;56672;56673	56673		5	9606
RILGLLDAYLK	1	1	Unmodified	1273.7758	0.77580772	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	13	0													2				19.75	19.75	2;3	0.004383	15104	DP690-13	91.265	53.105			0.92749	1.0683	1.6471	2	0	Median	115730000	54528000	61201000	12060	598	11238	23416;23417	56674;56675;56676;56677;56678;56679	56675		6	9606
RILVATNLFGR	0	2	Unmodified	1258.751	0.75098995	63;1237	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	no	no	0	0	1	13	0													1				16.801	16.801	3	0.00023108	11218	DP690-13	108.31	89.356			0.83823	0.96247	NaN	1	0	Median	73128000	39045000	34083000	12061	63;1237	11239	23418	56680;56681;56682;56683	56681		4	9606
RIPADTFAALK	1	1	Unmodified	1201.6819	0.68190733	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	2	0		1															14.92	14.92	2	0.0052639	7621	DP690-2	94.409	29.163			1.3274	1.3067	NaN	1	0	Median	2467200	975880	1491300	12062	766	11240	23419	56684	56684		1	9606
RIPLAEWESR	0	2	Unmodified	1255.6673	0.6673199	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	1	12	1.73									1				3				15.096	15.096	2;3	3.0005E-05	8835	DP690-13	166.86	130.34			0.75896	0.88306	14.139	4	0	Linear	1791699999.9999998	1029499999.9999999	762240000	12063	637	11241	23420;23421;23422;23423	56685;56686;56687;56688;56689;56690;56691;56692;56693;56694	56689		10	9606
RIPVSPEQAR	0	2	Unmodified	1151.6411	0.64110515	2142	Q9H981	ACTR8	Actin-related protein 8	yes	yes	0	0	1	12	0												1					10.577	10.577	2	0.0018208	2969	DP690-12	109.83	73.273			0.57466	0.65157	NaN	1	0	Median	20382000	12359000	8023200	12064	2142	11242	23424	56695	56695		1	9606
RIQLVEEELDR	0	2	Unmodified	1398.7467	0.74669243	1028;398;434	P67936;CON__Q3SX28;P07951;P06753;P09493	TPM4;TPM2;TPM3;TPM1	Tropomyosin alpha-4 chain;Tropomyosin beta chain;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain	no	no	0	0	1	15	0															1		15.19	15.19	2	0.00023348	9053	DP690-15	175.33	127.72			0.89959	0.97588	NaN	1	0	Median	98775000	52874000	45901000	12065	1028;398;434	11243	23425	56696;56697	56697		2	9606
RIQLVEEELDRAQER	0	3	Unmodified	1882.9861	0.98608786	1028;398;434	P67936;CON__Q3SX28;P07951;P06753;P09493	TPM4;TPM2;TPM3;TPM1	Tropomyosin alpha-4 chain;Tropomyosin beta chain;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain	no	no	0	0	2	14.5	0.5														1	1		15.044	15.044	3	0.0001276	8785	DP690-15	115.12	82.381			0.72522	0.77295	11.686	2	0	Median	290890000	157000000	133890000	12066	1028;398;434	11244	23426;23427	56698;56699;56700	56699		3	9606
RISASCQHPTAFEEAIPK	1	1	Unmodified	2041.0051	0.005108738	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	1	5	0					1												13.643	13.643	3	0.00014616	6436	DP690-5	101.5	67.41			0.71446	0.76595	NaN	1	0	Median	129990000	71147000	58847000	12067	2385	11245	23428	56701;56702;56703;56704	56702		4	9606
RISEQFTAMFR	0	2	Oxidation (M)	1400.6871	0.68706906	1034;406;2017;370;1217	P07437;P68371;Q9BVA1;Q13885;Q13509;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	1	1	13	0													2				14.677	14.677	2;3	0.0013099	8236	DP690-13	87.641	50.957			0.9973	1.1451	NaN	1	0	Median	327640000	142050000	185600000	12068	406;1034;2017;1217;370	11246	23429;23430	56705;56706;56707;56708;56709	56705	389	5	9606
RISEQFTAMFR	0	2	Unmodified	1384.6922	0.69215444	1034;406;2017;370;1217	P07437;P68371;Q9BVA1;Q13885;Q13509;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	0	1	5	0					1												16.879	16.879	3	0.0015551	10458	DP690-5	85.845	68.409			0.98872	0.97645	NaN	1	0	Median	48552000	24427000	24125000	12069	406;1034;2017;1217;370	11246	23431	56710;56711	56711		2	9606
RISGLIYEETR	0	2	Unmodified	1335.7147	0.71466402	990	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	16	0																2	14.168	14.168	2;3	0.0005167	7461	DP690-16	181.4	181.4			0.98488	1.0406	1.5593	2	0	Median	526180000	270090000	256090000	12070	990	11247	23432;23433	56712;56713;56714;56715;56716	56714		5	9606
RIVEQDTMPPK	1	1	Unmodified	1312.6809	0.68092105	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	1	12	0												1					10.605	10.605	2	0.00017574	3077	DP690-12	128.86	92.476			0.66044	0.83872	NaN	1	0	Median	19187000	11100000	8087500	12071	96	11248	23434	56717;56718	56718		2	9606
RKDPLTHTSNSLPR	1	2	Unmodified	1620.8696	0.86960153	2317	Q9UBP0	SPAST	Spastin	yes	yes	0	0	2	12	0												1					10.329	10.329	4	2.3045E-05	2587	DP690-12	148.48	109.69			0.76912	0.87101	NaN	1	0	Median	45563000	25308000	20255000	12072	2317	11249	23435	56719;56720	56720		2	9606
RKLEGDSTDLSDQIAELQAQIAELK	2	1	Unmodified	2770.4349	0.43486693	668	P35579	MYH9	Myosin-9	yes	yes	0	0	2	2	0		1															21.726	21.726	4	8.758E-07	15476	DP690-2	140.48	120.08			1.3352	1.3728	NaN	1	0	Median	4130400	2357900	1772500	12073	668	11250	23436	56721;56722	56722		2	9606
RKPDTIEVQQMK	2	1	Unmodified	1471.7817	0.78169773	498	P26038;P35241;P15311	MSN;RDX;EZR	Moesin;Radixin;Ezrin	yes	no	0	0	2	4	0				1													10.478	10.478	3	0.056486	2856	DP690-4	83.137	59.256			0.89204	0.96786	NaN	1	0	Median	3964200	1898400	2065800	12074	498	11251	23437	56723	56723		0	9606
RKPVEGYDISFLITNFHTEQMYK	2	1	Oxidation (M)	2831.3953	0.39525072	917	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	1	2	16	0																1	18.534	18.534	4	0.00048258	12956	DP690-16	78.057	52.254			0.76265	0.84251	NaN	1	0	Median	10975000	3780800	7194200	12075	917	11252	23438	56724;56725	56725	1411	2	9606
RKQEELQQLEQQR	1	2	Unmodified	1711.8965	0.89654457	1319	Q15149	PLEC	Plectin	yes	yes	0	0	2	9.8	0.748									2	2	1						11.447	11.447	3;4	7.7563E-05	3794	DP690-9	157.33	34.079			0.83098	0.87457	11.922	5	0	Median	633310000	321050000	312260000	12076	1319	11253	23439;23440;23441;23442;23443	56726;56727;56728;56729;56730;56731;56732;56733;56734;56735;56736	56732		10	9606
RLAEDEAFQR	0	2	Unmodified	1233.6102	0.61019895	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.33	0.471									2	1							11.778	11.778	2;3	0.010487	4238	DP690-9	72.531	27.37			1.0341	1.2317	21.628	3	0	Median	108800000	51105000	57692000	12077	1319	11254	23444;23445;23446	56737;56738;56739;56740	56739		4	9606
RLDDSLLYLR	0	2	Unmodified	1262.6983	0.69828568	792	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	0	0	1	15	0															1		17.746	17.746	2	0.001565	12264	DP690-15	112.36	75.8			1.2612	1.3682	NaN	1	0	Median	20444000	9396300	11048000	12078	792	11255	23447	56741;56742	56742		2	9606
RLDECEEAFQGTK	1	1	Unmodified	1581.7093	0.70932065	948	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	1	7	0							2										12.713	12.713	2;3	0.00019826	5524	DP690-7	152.96	123.19			1.083	1.1414	NaN	1	0	Median	20633000	15901000	4731900	12079	948	11256	23448;23449	56743;56744;56745;56746;56747	56745		5	9606
RLDLVHTAALMLDK	1	1	Unmodified	1594.8865	0.88649715	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	10	0										1							19.06	19.06	3	0.033638	15451	DP690-10	50.108	31.643			0.76114	0.94119	NaN	1	0	Median	31770000	21379000	10391000	12080	269	11257	23450	56748	56748		1	9606
RLDLVHTAALMLDKNNLVK	2	1	Oxidation (M)	2179.2147	0.21470758	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	2	10	0										1							16.838	16.838	4	0.0048389	12238	DP690-10	62.916	49.62			0.70161	0.80062	NaN	1	0	Median	90087000	55765000	34322000	12081	269	11258	23451	56749	56749	278	1	9606
RLDLVHTAALMLDKNNLVK	2	1	Unmodified	2163.2198	0.21979296	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	2	10	0										1							19.176	19.176	4	2.0412E-10	15606	DP690-10	160.43	139.07			0.90408	1.0317	NaN	1	0	Median	73607000	40003000	33604000	12082	269	11258	23452	56750;56751;56752	56751		3	9606
RLDPDAIPSPIQVIEDDRNNR	0	3	Unmodified	2432.2408	0.24079899	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	2	3	0			1														18.59	18.59	3	0.00046863	13338	DP690-3	90.765	90.765			0.48109	0.4895	NaN	1	0	Median	18529000	11874000	6654300	12083	883	11259	23453	56753;56754;56755;56756	56754		4	9606
RLDQELDFILSQQK	1	1	Unmodified	1731.9155	0.91554867	688	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	1	12	0												1					19.972	19.972	3	0.0023397	15736	DP690-12	75.02	53.206			0.82602	1.0403	NaN	1	0	Median	16545000	7805300	8739300	12084	688	11260	23454	56757	56757		1	9606
RLEAELAAHEPAIQGVLDTGKK	2	1	Unmodified	2345.2703	0.27030821	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	2	10	0										1							15.922	15.922	4	0.004849	10855	DP690-10	69.525	48.768			0.61468	0.70142	NaN	1	0	Median	107930000	65886000	42047000	12085	1236	11261	23455	56758	56758		1	9606
RLEAGAMVLADR	0	2	Oxidation (M)	1316.6871	0.68706906	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	1	1	7	4			1								1						12.793	12.793	3	0.017631	6140	DP690-11	56.569	39.907			1.0988	1.2408	23.682	2	0	Median	210480000	108020000	102460000	12086	581	11262	23456;23457	56759;56760;56761;56762;56763	56760	767	5	9606
RLEAGAMVLADR	0	2	Unmodified	1300.6922	0.69215444	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	11	0											2						14.375	14.375	2;3	0.00011369	8442	DP690-11	142.12	105.78			0.85907	1.059	24.257	2	0	Median	414130000	222330000	191800000	12087	581	11262	23458;23459	56764;56765;56766;56767;56768;56769;56770	56766		7	9606
RLEASDGGLDSAELAAELGMEHQAVVGAVK	1	1	Oxidation (M)	3038.4979	0.49787789	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	1	13.3	1.89												2				1	18.38	18.38	3;4	2.8275E-18	13736	DP690-12	165.79	147.7			0.89966	1.0048	2.8158	3	0	Plateau	400600000	208230000	192370000	12088	2434	11263	23460;23461;23462	56771;56772;56773;56774;56775	56771	2875	5	9606
RLEDQLAGLQQELAALALK	1	1	Unmodified	2079.1688	0.16880325	2338	Q9UH99	SUN2	SUN domain-containing protein 2	yes	yes	0	0	1	11	0											1						23.696	23.696	3	0.00076831	21400	DP690-11	75.608	61.342			0.29286	0.3277	NaN	1	0	Median	4369500	1885500	2483900	12089	2338	11264	23463	56776	56776		1	9606
RLEEEEAAAEKEDR	1	2	Unmodified	1673.7857	0.78565671	1433	Q5T280	C9orf114	Putative methyltransferase C9orf114	yes	yes	0	0	2	13	0													1				10.695	10.695	3	8.2049E-15	3031	DP690-13	228.11	203.6			0.70422	0.7795	NaN	1	0	Median	129140000	74470000	54670000	12090	1433	11265	23464	56777;56778;56779	56777		3	9606
RLEPPSSSHYCLYSYR	0	2	Unmodified	2013.9367	0.93669482	2154	Q9HAS0	C17orf75	Protein Njmu-R1	yes	yes	0	0	1	13	0													1				14.274	14.274	3	0.063544	7773	DP690-13	59.579	22.809			NaN	NaN	NaN	0	0	Median	23678000	23678000	0	12091	2154	11266	23465	56780	56780		1	9606
RLETVALPLQGLEDLAADR	0	2	Unmodified	2079.1324	0.13241774	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	1	9	0									1								21.338	21.338	3	0.072496	16380	DP690-9	58.93	41.955			0.77104	0.83577	NaN	1	0	Median	5765800	3484300	2281400	12092	2411	11267	23466	56781	56781		0	9606
RLFEGNALLR	0	2	Unmodified	1187.6775	0.67749065	760	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	15	0															1		15.367	15.367	2	0.00012074	9184	DP690-15	169.41	113.88			0.93758	1.0171	NaN	1	0	Median	143020000	71265000	71760000	12093	760	11268	23467	56782;56783	56782		2	9606
RLFSGATMASSR	0	2	Oxidation (M)	1298.6401	0.64011887	2326	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	1	1	15	0															1		10.669	10.669	3	0.0021803	3109	DP690-15	75.89	59.117			0.81629	0.88551	NaN	1	0	Median	31950000	15831000	16119000	12094	2326	11269	23468	56784;56785;56786	56784	2776	3	9606
RLGLPGDEVDNK	1	1	Unmodified	1311.6783	0.67827852	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								13.189	13.189	2	0.058608	6146	DP690-9	99.568	44.504			NaN	NaN	NaN	0	0	Median	4610200	0	4610200	12095	1046	11270	23469	56787;56788	56788		2	9606
RLGLPGDEVDNKVK	2	1	Unmodified	1538.8417	0.84165545	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	2	9.5	0.5									1	1							12.613	12.613	3	2.2568E-05	5298	DP690-9	113.43	97.635			0.67233	0.71937	NaN	1	0	Median	79205000	61108000	18098000	12096	1046	11271	23470;23471	56789;56790;56791	56791		3	9606
RLGSLLPVLSPTSLPSPLPATLETPVPAFLK	1	1	Unmodified	3210.8632	0.86317275	781	P48681	NES	Nestin	yes	yes	0	0	1	10	0										1							23.995	23.995	3	0.068006	21891	DP690-10	47.66	47.66			0.46321	0.5159	NaN	1	0	Median	5414300	3918100	1496200	12097	781	11272	23472	56792	56792		0	9606
RLHVSNIPFR	0	2	Unmodified	1237.7044	0.70437411	169	O43251;A6NFN3;Q9NWB1	RBFOX2;RBFOX3;RBFOX1	RNA binding protein fox-1 homolog 2;RNA binding protein fox-1 homolog 3;RNA binding protein fox-1 homolog 1	yes	no	0	0	1	13	0													1				12.924	12.924	3	0.0030833	5836	DP690-13	82.494	54.63			0.66854	0.76762	NaN	1	0	Median	44148000	26212000	17935000	12098	169	11273	23473	56793;56794;56795	56793		3	9606
RLIDLHSPSEIVK	1	1	Unmodified	1505.8566	0.85657723	928	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	1	16	0																1	14.69	14.69	3	5.2234E-05	8207	DP690-16	154.23	127.87			0.75247	0.79984	NaN	1	0	Median	90684000	48264000	42420000	12099	928	11274	23474	56796;56797;56798;56799	56797		4	9606
RLIPDGCGVK	1	1	Unmodified	1113.5965	0.59646314	601	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	1	15	0															1		11.894	11.894	2	0.02508	4515	DP690-15	81.525	31.989			0.7853	0.89291	NaN	1	0	Median	46473000	25661000	20812000	12100	601	11275	23475	56800;56801;56802	56801		3	9606
RLLEGEDAHLTQYK	1	1	Unmodified	1671.858	0.8580338	45	CON__Q04695;Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	1	13	0													1				13.208	13.208	3	0.00098756	6260	DP690-13	86.756	40.992		+	0.71491	0.84353	NaN	1	0	Median	51557000	22199000	29358000	12101	45	11276	23476	56803	56803		1	9606
RLLGADSATVFNIQEPEEETANQEYK	1	1	Unmodified	2951.4149	0.41485977	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	5	3.46			3								1						18.161	18.161	3	3.4824E-46	13933	DP690-11	235.76	235.76			0.76235	0.8692	NaN	1	0	Median	146930000	83194000	63736000	12102	1758	11277	23477;23478;23479;23480	56804;56805;56806;56807;56808;56809;56810;56811;56812;56813;56814;56815	56806		12	9606
RLLQEQHQLSSR	0	2	Unmodified	1493.8063	0.806273	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	1	9	0									1								10.374	10.374	3	0.083965	2665	DP690-9	32.478	7.782			0.82236	0.89141	NaN	1	0	Median	5304900	3006900	2298000	12103	1453	11278	23481	56816	56816		1	9606
RLLTSITTK	1	1	Unmodified	1031.6339	0.63389451	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	10.5	0.5										1	1						12.122	12.122	2	0.011506	5162	DP690-11	98.629	98.629			0.91667	1.0633	4.4094	2	0	Median	387170000	209160000	178010000	12104	2190	11279	23482;23483	56817;56818;56819;56820	56820		4	9606
RLNHYVLYK	1	1	Unmodified	1204.6717	0.671677	168	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	1	4	0				1													11.197	11.197	3	0.0092938	3619	DP690-4	72.879	52.042			1.5021	1.7131	NaN	1	0	Median	7154100	3206000	3948000	12105	168	11280	23484	56821;56822	56821		2	9606
RLNVWDLSK	1	1	Unmodified	1129.6244	0.62439245	1142;1360	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	1	13	0													1				15.797	15.797	2	0.019268	9807	DP690-13	90.709	22.728			0.86434	0.96904	NaN	1	0	Median	114140000	65522000	48621000	12106	1142;1360	11281	23485	56823;56824	56823		2	9606
RLPEAIEEVK	1	1	Unmodified	1182.6608	0.66083754	2320	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	1	6	0						1											13.537	13.537	2	0.024551	6356	DP690-6	81.865	81.865			0.78617	0.88107	NaN	1	0	Median	15375000	7036900	8338200	12107	2320	11282	23486	56825;56826	56825		2	9606
RLPNNHIGISFIPR	0	2	Unmodified	1632.9212	0.92124317	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										1							15.19	15.19	3	0.0013991	9802	DP690-10	82.102	82.102			0.65666	0.78211	NaN	1	0	Median	340490000	200050000	140450000	12108	250	11283	23487	56827;56828;56829;56830	56828		4	9606
RLPPEQESLSR	0	2	Unmodified	1310.6943	0.69426293	1734	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	1	11	0											1						10.848	10.848	2	0.017272	3379	DP690-11	82.494	50.24			0.83262	1.0264	NaN	1	0	Median	19988000	10581000	9406700	12109	1734	11284	23488	56831	56831		1	9606
RLPPQQIEK	1	1	Unmodified	1107.64	0.64004252	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	1	11.7	3.3							1							2			10.609	10.609	2	0.0035085	2440	DP690-14	119.21	73.876			0.71406	0.87087	10.06	3	0	Plateau	87012000	49405000	37607000	12110	769	11285	23489;23490;23491	56832;56833;56834;56835;56836;56837;56838;56839;56840	56834		9	9606
RLPVPESITGFAR	0	2	Unmodified	1441.8041	0.80414773	1659	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	0	0	1	16	0																1	16.888	16.888	3	5.3448E-05	10903	DP690-16	131.79	81.311			0.63454	0.67041	NaN	1	0	Median	42932000	26640000	16293000	12111	1659	11286	23492	56841;56842;56843;56844	56842		4	9606
RLQEDKEQMAQQLAEETQGFQR	1	2	Oxidation (M)	2678.2718	0.27184112	1319	Q15149	PLEC	Plectin	yes	yes	0	1	2	9.33	0.471									2	1							14.712	14.712	3;4	5.052E-10	7972	DP690-9	147.64	135.08			0.80534	0.91477	16.367	3	0	Plateau	214340000	111160000	103180000	12112	1319	11287	23493;23494;23495	56845;56846;56847;56848;56849;56850;56851;56852;56853;56854	56848	2026	10	9606
RLQEDKEQMAQQLAEETQGFQR	1	2	Unmodified	2662.2769	0.2769265	1319	Q15149	PLEC	Plectin	yes	yes	0	0	2	10	0										1							16.437	16.437	4	0.0013923	11667	DP690-10	84.107	66.512			0.82487	0.93397	NaN	1	0	Median	191900000	106670000	85228000	12113	1319	11287	23496	56855	56855		1	9606
RLQEEDQQFR	0	2	Unmodified	1347.6531	0.6531264	1198	Q13322	GRB10	Growth factor receptor-bound protein 10	yes	yes	0	0	1	12	0												1					10.823	10.823	2	0.00051002	3324	DP690-12	126.31	78.222			0.7126	0.80797	NaN	1	0	Median	16623000	10025000	6597500	12114	1198	11288	23497	56856;56857	56856		2	9606
RLQGQLEQGDDTAAER	0	2	Unmodified	1785.8606	0.86055299	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	1	10	1									1		1						11.185	11.185	3	3.836E-05	3518	DP690-9	91.616	91.616			0.80302	0.92825	7.2501	2	0	Median	58759000	26438000	32321000	12115	1687	11289	23498;23499	56858;56859;56860	56860		2	9606
RLQITPDSNGEQFSSLIQR	0	2	Unmodified	2188.1236	0.12364397	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	1	3	0			1														17.559	17.559	3	5.7647E-05	12062	DP690-3	110.37	79.684			0.87212	0.90219	NaN	1	0	Median	24927000	12507000	12420000	12116	1911	11290	23500	56861;56862;56863	56861		3	9606
RLQQQQRPEDAEDGAEGGGK	1	2	Unmodified	2168.0206	0.020635461	1141	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	2	3	0			2														10.276	10.276	3;4	0.0011979	2460	DP690-3	106.36	80.861			1.1443	1.2041	NaN	1	0	Median	25884000	10437000	15447000	12117	1141	11291	23501;23502	56864;56865	56865		2	9606
RLQTSEAALSSSQAEVASLR	0	2	Unmodified	2103.092	0.09200949	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	1	11	0											1						15.645	15.645	3	0.011888	10352	DP690-11	107.57	107.57			0.55165	0.68003	NaN	1	0	Median	66085000	41880000	24205000	12118	2024	11292	23503	56866	56866		0	9606
RLQYTEHQQLEGWR	0	2	Unmodified	1842.9125	0.91252898	1160	Q12800;Q9NZI6	TFCP2;TFCP2L1	Alpha-globin transcription factor CP2;Transcription factor CP2-like protein 1	yes	no	0	0	1	12	0												1					13.413	13.413	3	0.028725	6813	DP690-12	52.009	35.646			1.1794	1.3372	NaN	1	0	Median	34373000	16742000	17632000	12119	1160	11293	23504	56867	56867		1	9606
RLSEDYGVLK	1	1	Unmodified	1178.6295	0.62953741	643	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	1	7.5	0.5							1	1									13.344	13.344	2	0.00095306	6249	DP690-8	120.45	79.674			0.8697	0.96277	5.5075	2	0	Median	139240000	73790000	65454000	12120	643	11294	23505;23506	56868;56869;56870;56871;56872;56873;56874	56872		7	9606
RLSFAVPFR	0	2	Unmodified	1091.624	0.62399852	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								16.762	16.762	2	0.036433	10851	DP690-9	82.75	56.645			0.42089	0.45623	NaN	1	0	Median	29633000	20206000	9426300	12121	1046	11295	23507	56875	56875		1	9606
RLTAEDLFEAR	0	2	Unmodified	1319.6834	0.68336389	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.75	0.829									2	1	1						16.609	16.609	2;3	0.0025213	10681	DP690-9	76.326	48.898			1.029	1.232	31.931	3	0	Plateau	120660000	56352000	64304000	12122	1319	11296	23508;23509;23510;23511	56876;56877;56878;56879;56880	56879		4	9606
RLTVSSLQESGLK	1	1	Unmodified	1416.7936	0.79364262	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	8.2	3.19		1							2	1	1						14.13	14.13	2;3	9.0889E-05	6704	DP690-2	130.1	100.32			0.85279	0.94318	5.8374	5	0	Median	679890000	352950000	326940000	12123	549	11297	23512;23513;23514;23515;23516	56881;56882;56883;56884;56885;56886;56887;56888;56889;56890;56891;56892;56893;56894	56889		14	9606
RLTVSSLQESGLKVNQPASFAVSLNGAK	2	1	Unmodified	2900.572	0.57196954	549	P21333	FLNA	Filamin-A	yes	yes	0	0	2	10	0										1							17.619	17.619	4	0.039398	13419	DP690-10	40.952	40.952			0.76602	0.87412	NaN	1	0	Median	196150000	105150000	90997000	12124	549	11298	23517	56895	56895		1	9606
RLTVTSLQETGLK	1	1	Unmodified	1444.8249	0.82494275	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	6	4		1								1							14.611	14.611	2	0.0018011	7294	DP690-2	105.03	65.727			1.1182	1.2486	19.381	2	0	Median	75057000	33570000	41486000	12125	1270	11299	23518;23519	56896;56897;56898;56899;56900;56901	56900		6	9606
RLYSLALHPNAFK	1	1	Unmodified	1528.8514	0.85143227	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.5	0.5									1	1							14.734	14.734	3	0.00043653	8146	DP690-9	96.866	96.866			0.71809	0.86071	6.6784	2	0	Median	134060000	73926000	60131000	12126	1046	11300	23520;23521	56902;56903;56904;56905	56904		4	9606
RMEELHNQEMQK	1	1	Unmodified	1571.7184	0.71844555	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	11	0											1						10.363	10.363	3	0.0017015	2645	DP690-11	83.137	70.782			0.88793	1.0056	NaN	1	0	Median	157590000	74745000	82844000	12127	566	11301	23522	56906;56907	56907		2	9606
RNAEFLTCNIPTSNASNNMVTTEK	1	1	Oxidation (M)	2727.2592	0.25922753	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	1	11	0											1						14.958	14.958	3	0.016063	9278	DP690-11	69.913	47.435			NaN	NaN	NaN	0	0	Median	22594000	22594000	0	12128	897	11302	23523	56908;56909;56910	56908	1392	3	9606
RNAEFLTCNIPTSNASNNMVTTEK	1	1	Unmodified	2711.2643	0.26431291	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	11	0											1						15.996	15.996	3	0.03263	10830	DP690-11	57.662	30.943			NaN	NaN	NaN	0	0	Median	13768000	13768000	0	12129	897	11302	23524	56911	56911		1	9606
RNAVPITPTLNR	0	2	Unmodified	1350.7732	0.77318195	33	CON__P02663			yes	yes	0	0	1	3.8	2.32	1	1	1			1	1										13.049	13.049	3	0.00045203	5455	DP690-2	110.8	73.621		+	NaN	NaN	NaN	0	0	Median	45769000	45769000	0	12130	33	11303	23525;23526;23527;23528;23529	56912;56913;56914;56915;56916;56917;56918;56919	56914		8	
RNEFLGELQK	1	1	Unmodified	1232.6513	0.65133548	2231;1248	Q9NVA2;Q14141	SEPT11;SEPT6	Septin-11;Septin-6	no	no	0	0	1	13	0													1				14.313	14.313	2	0.00085626	7767	DP690-13	121.73	3.843			0.80534	0.89014	NaN	1	0	Median	142400000	76404000	65995000	12131	2231;1248	11304	23530	56920;56921	56920		2	9606
RNENSEVDTSAGSGSAPSVLHQR	0	2	Unmodified	2397.1269	0.12689145	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	1	9	0									1								11.826	11.826	3	0.001629	4451	DP690-9	102.29	73.15			NaN	NaN	NaN	0	0	Median	1276400	1276400	0	12132	1696	11305	23531	56922	56922		1	9606
RNFQEEQINTR	0	2	Unmodified	1433.7011	0.70113922	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	1	11	0											2						11.025	11.025	2;3	0.0015671	3572	DP690-11	87.216	67.374			0.72588	0.89481	NaN	1	0	Median	67461000	41234000	26227000	12133	1613	11306	23532;23533	56923;56924;56925;56926;56927	56923		5	9606
RNLDFQDVLDK	1	1	Unmodified	1361.6939	0.69392858	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	1	12	0												1					16.721	16.721	2	0.0052756	11444	DP690-12	94.363	55.058			1.0087	1.217	NaN	1	0	Median	69436000	31366000	38070000	12134	2475	11307	23534	56928;56929	56928		2	9606
RNLDIERPTYTNLNR	0	3	Unmodified	1873.9759	0.97585752	1032;1521;1977;452;1033	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;Q9BQE3;P68366	TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain	no	no	0	0	2	9	4					1								1				13.478	13.478	3	0.00010971	6200	DP690-5	116.9	74.117			0.9088	0.93444	10.862	2	0	Median	773980000	402550000	371440000	12135	452;1032;1521;1977;1033	11308	23535;23536	56930;56931;56932;56933	56932		4	9606
RNLLSLGHNNIVR	0	2	Unmodified	1504.8586	0.85864292	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	1	13	0													1				13.666	13.666	3	0.0048643	6952	DP690-13	96.756	66.819			NaN	NaN	NaN	0	0	Median	22088000	22088000	0	12136	1114	11309	23537	56934	56934		1	9606
RNPSSSTLPGGGVQNPSADR	0	2	Unmodified	1995.9722	0.97222871	2364	Q9UJY4	GGA2	ADP-ribosylation factor-binding protein GGA2	yes	yes	0	0	1	12	0												1					11.762	11.762	3	0.0019092	4523	DP690-12	69.256	47.722			0.80317	0.91067	NaN	1	0	Median	21681000	13350000	8330900	12137	2364	11310	23538	56935;56936;56937	56935		3	9606
RPAEDMEEEQAFK	1	1	Oxidation (M)	1594.6933	0.69333623	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	1	10.6	4.03				2								4	1			1	11.539	11.539	2;3	0.00044697	3670	DP690-12	117.09	74.348			0.7101	0.83533	20.195	7	0	Median	286030000	106140000	179890000	12138	959	11311	23539;23540;23541;23542;23543;23544;23545;23546	56938;56939;56940;56941;56942;56943;56944;56945;56946;56947;56948;56949;56950;56951;56952;56953;56954;56955;56956;56957;56958;56959;56960	56940	1478	23	9606
RPAEDMEEEQAFK	1	1	Unmodified	1578.6984	0.69842161	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	12	0												2					12.773	12.773	2;3	2.0253E-10	5902	DP690-12	187.31	155.82			0.65017	0.74292	1.1403	2	0	Median	334220000	193650000	140580000	12139	959	11311	23547;23548	56961;56962;56963;56964;56965;56966	56964		6	9606
RPAEDMEEEQAFKR	1	2	Oxidation (M)	1750.7944	0.79444726	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	2	11.4	3.87				3				1	1			5	2	2	2	2	10.737	10.737	3;4	8.6484E-06	2932	DP690-15	127.03	108.24			0.72048	0.77253	76.486	14	0	Median	7392199999.999999	4368700000	3023499999.9999995	12140	959	11312	23549;23550;23551;23552;23553;23554;23555;23556;23557;23558;23559;23560;23561;23562;23563;23564;23565;23566	56967;56968;56969;56970;56971;56972;56973;56974;56975;56976;56977;56978;56979;56980;56981;56982;56983;56984;56985;56986;56987;56988;56989;56990;56991;56992;56993;56994;56995;56996;56997;56998;56999;57000;57001;57002;57003;57004;57005;57006;57007	56993	1478	41	9606
RPAEDMEEEQAFKR	1	2	Unmodified	1734.7995	0.79953264	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	2	11.2	3.29				1								3	1	1			11.742	11.742	3;4	2.4426E-06	4329	DP690-12	179.55	160.82			0.72505	0.75144	13.5	5	0	Median	2825100000	1613299999.9999998	1211800000	12141	959	11312	23567;23568;23569;23570;23571;23572	57008;57009;57010;57011;57012;57013;57014;57015;57016;57017;57018;57019;57020;57021;57022;57023;57024;57025;57026;57027;57028	57010		21	9606
RPAEDTDRETVAGIPNK	1	2	Unmodified	1867.9388	0.93880331	1460	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	2	10	0										1							10.983	10.983	3	0.0096245	3637	DP690-10	63.29	63.29			0.6709	0.77757	NaN	1	0	Median	59519000	32452000	27067000	12142	1460	11313	23573	57029;57030	57029		2	9606
RPAGGPQNQFPFQFGR	0	2	Unmodified	1802.8965	0.89648499	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	1	10	0										1							17.004	17.004	3	0.022768	12191	DP690-10	69.261	21.622			NaN	NaN	NaN	0	0	Median	118100000	118100000	0	12143	103	11314	23574	57031	57031		1	9606
RPCPYEQAQGGDGPEEQ	0	1	Unmodified	1916.7959	0.79590382	2098	Q9H1C4	UNC93B1	Protein unc-93 homolog B1	yes	yes	0	0	1	8.25	3.11			1						1	1	1						11.943	11.943	2	1.3567E-09	5015	DP690-10	201.08	178.61			0.59255	0.74013	11.948	2	0	Median	40198000	26825000	13373000	12144	2098	11315	23575;23576;23577;23578	57032;57033;57034;57035;57036;57037;57038;57039;57040;57041;57042	57032		11	9606
RPDDTAFQIVELR	0	2	Unmodified	1558.8104	0.81035532	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	1	10	1									1		1						17.691	17.691	3	1.2091E-05	12074	DP690-9	121.76	86.103			0.7333	0.84765	7.8475	2	0	Median	71487000	39291000	32196000	12145	295	11316	23579;23580	57043;57044;57045;57046;57047;57048	57046		6	9606
RPDQMEDGLEPEK	1	1	Unmodified	1542.6984	0.69842161	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	1	11	0											1						12.513	12.513	2	0.0060112	5687	DP690-11	134.75	88.148			NaN	NaN	NaN	0	0	Median	11603000	11603000	0	12146	2024	11317	23581	57049	57049		1	9606
RPDQMEDGLEPEK	1	1	Oxidation (M)	1558.6933	0.69333623	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	1	1	11	0											1						10.661	10.661	2	0.0055576	3043	DP690-11	105.46	65.109			NaN	NaN	NaN	0	0	Median	0	0	0	12147	2024	11317	23582	57050	57050	2556	1	9606
RPDVVENQPDAASQLNVDASGNLAK	1	1	Unmodified	2607.2889	0.2888714	2275	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	1	6	0						1											15.287	15.287	3	7.5815E-07	8464	DP690-6	131.75	118.07			0.75639	0.84769	NaN	1	0	Median	4508900	2369600	2139300	12148	2275	11318	23583	57051;57052;57053;57054;57055	57054		5	9606
RPEAAQLLEDVQAALKPFSVK	2	1	Unmodified	2309.2743	0.27433095	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	2	11	0											1						22.481	22.481	4	0.0015977	19904	DP690-11	83.065	70.176			0.74782	0.90463	NaN	1	0	Median	33991000	17005000	16986000	12149	797	11319	23584	57056;57057	57056		2	9606
RPEKPVPPPPPIAK	2	1	Unmodified	1521.9031	0.90313349	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	2	13	2											1				1		10.525	10.525	3	0.00023901	2915	DP690-11	108.23	97.133			0.46193	0.54314	20.026	2	0	Median	351870000	259400000	92470000	12150	2501	11320	23585;23586	57058;57059;57060	57058		3	9606
RPELEDSTLR	0	2	Unmodified	1214.6255	0.62551466	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	2.74		1							2	3	2						11.862	11.862	2;3	0.00014524	4944	DP690-10	228.84	166.29			0.70871	0.80527	10.112	6	0	Median	1481199999.9999998	877320000	603880000	12151	1319	11321	23587;23588;23589;23590;23591;23592;23593;23594	57061;57062;57063;57064;57065;57066;57067;57068;57069;57070;57071;57072;57073;57074;57075;57076;57077;57078	57063		18	9606
RPESFTTPEGPKPR	1	2	Unmodified	1597.8213	0.82125436	1276	Q14493	SLBP	Histone RNA hairpin-binding protein	yes	yes	0	0	2	14	0														1			10.551	10.551	3	0.00064404	2903	DP690-14	97.223	58.155			0.69669	0.82503	NaN	1	0	Median	20891000	13106000	7785800	12152	1276	11322	23595	57079;57080;57081	57080		3	9606
RPFVAINYAAIR	0	2	Unmodified	1389.7881	0.78810374	1998	Q9BTC8	MTA3	Metastasis-associated protein MTA3	yes	yes	0	0	1	12	0												1					16.161	16.161	3	0.0011409	10648	DP690-12	90.913	58.289			NaN	NaN	NaN	0	0	Median	26951000	26951000	0	12153	1998	11323	23596	57082;57083	57082		2	9606
RPGEEGTVMSLAGK	1	1	Oxidation (M)	1446.7137	0.71367774	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	1	1	14	0														2			11.567	11.567	2;3	0.00026249	4252	DP690-14	99.991	66.674			0.77858	0.94928	7.4869	2	0	Median	124080000	69123000	54958000	12154	348	11324	23597;23598	57084;57085;57086;57087;57088	57087	357	5	9606
RPGEEGTVMSLAGK	1	1	Unmodified	1430.7188	0.71876312	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	1	14	0														1			13.648	13.648	2	0.00013226	7017	DP690-14	126.12	84.692			0.65778	0.77444	NaN	1	0	Median	100860000	61648000	39211000	12155	348	11324	23599	57089;57090;57091;57092;57093	57093		5	9606
RPGPAASPTPGPGPAPPAAPAPPR	0	2	Unmodified	2183.16	0.1599699	2218	Q9NUE0	ZDHHC18	Palmitoyltransferase ZDHHC18	yes	yes	0	0	1	14	0														1			12.884	12.884	3	0.00029167	6003	DP690-14	88.768	70.613			0.23492	0.27607	NaN	1	0	Median	20205000	15285000	4919800	12156	2218	11325	23600	57094;57095	57095		2	9606
RPHPQHSQQPPPPQQER	0	2	Unmodified	2043.0147	0.014702642	343	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	1	10	0										2							9.7523	9.7523	4;5	0.00018925	2172	DP690-10	98.676	80.097			0.40539	0.48284	12.053	2	0	Median	5835300	4139900	1695400	12157	343	11326	23601;23602	57096;57097;57098;57099;57100;57101;57102	57098		7	9606
RPISADSAIMNPASK	1	1	Oxidation (M)	1572.793	0.7929907	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	1	1	2	0		1															11.901	11.901	3	0.026988	4029	DP690-2	66.568	43.713			1.2122	1.1932	NaN	1	0	Median	13060000	5876000	7183900	12158	1075	11327	23603	57103	57103	1680	0	9606
RPITGTHLYQYR	0	2	Unmodified	1503.7946	0.79464568	2192	Q9NQZ5	STARD7	StAR-related lipid transfer protein 7, mitochondrial	yes	yes	0	0	1	6	0						1											11.707	11.707	3	0.0017356	4296	DP690-6	71.268	41.913			0.98427	1.0586	NaN	1	0	Median	5492400	2456700	3035700	12159	2192	11328	23604	57104	57104		1	9606
RPIVACELGR	0	2	Unmodified	1169.6339	0.63391128	2043	Q9BY42	RTFDC1	Protein RTF2 homolog	yes	yes	0	0	1	6	0						2											12.179	12.179	2;3	0.006295	4723	DP690-6	96.342	63.079			0.69549	0.74801	NaN	1	0	Median	14431000	9230500	5200200	12160	2043	11329	23605;23606	57105;57106;57107;57108	57106		4	9606
RPKEEDPATGTGDPPR	1	2	Unmodified	1721.8333	0.83327561	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	2	3	0			2														10.242	10.242	3;4	1.4238E-06	2405	DP690-3	139.49	120.17			0.52598	0.54782	9.4392	2	0	Median	79607000	52849000	26758000	12161	746	11330	23607;23608	57109;57110;57111;57112;57113;57114	57112		6	9606
RPLDDGVGNQLGALVHQR	0	2	Unmodified	1944.029	0.028955723	1875	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	1	12	0												1					16.064	16.064	3	0.068708	10503	DP690-12	59.252	39.699			0.71583	0.81164	NaN	1	0	Median	116960000	58068000	58890000	12162	1875	11331	23609	57115	57115		0	9606
RPLGNFTAPPTYTETLSTAPLASWVR	0	2	Unmodified	2845.4763	0.47627824	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	1	11	0											1						20.69	20.69	3	3.7574E-05	17496	DP690-11	113.05	75.588			0.50659	0.62448	NaN	1	0	Median	124010000	77744000	46264000	12163	1653	11332	23610	57116;57117;57118;57119;57120	57117		5	9606
RPLHSAQAVDVASASNFR	0	2	Unmodified	1924.9868	0.98675656	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	1	4	0				2													12.918	12.918	3;4	4.9465E-07	5787	DP690-4	137.32	137.32			0.74875	0.78453	6.7975	2	0	Median	39444000	22626000	16818000	12164	2116	11333	23611;23612	57121;57122;57123;57124;57125	57121		5	9606
RPLQGVANQEPSNCAAVAVGR	0	2	Unmodified	2193.1073	0.1072824	2327	Q9UBZ4	APEX2	DNA-(apurinic or apyrimidinic site) lyase 2	yes	yes	0	0	1	12	0												1					13.303	13.303	3	4.6555E-10	6617	DP690-12	146.78	126.63			0.63615	0.72129	NaN	1	0	Median	20024000	12988000	7035800	12165	2327	11334	23613	57126;57127;57128	57126		3	9606
RPLVTPQAAPEPK	1	1	Unmodified	1402.7932	0.79324869	2528	Q9Y6X8	ZHX2	Zinc fingers and homeoboxes protein 2	yes	yes	0	0	1	11	0											1						11.469	11.469	3	0.0019026	4236	DP690-11	79.744	49.937			0.56431	0.70582	NaN	1	0	Median	38099000	23666000	14432000	12166	2528	11335	23614	57129;57130	57130		2	9606
RPMDGTYGPPAK	1	1	Unmodified	1288.6234	0.62340617	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	1	10	0										1							10.743	10.743	2	0.078863	3261	DP690-10	65.278	8.3618			0.19321	0.23526	NaN	1	0	Median	24496000	21052000	3443600	12167	103	11336	23615	57131	57131		1	9606
RPNPDILDHER	0	2	Unmodified	1360.6848	0.68476088	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	1	9	0									1								10.902	10.902	3	0.015409	3296	DP690-9	72.089	41.781			NaN	NaN	NaN	0	0	Median	2478000	2478000	0	12168	2422	11337	23616	57132;57133	57132		2	9606
RPNQALLENIALYLTHMLK	1	1	Unmodified	2237.2354	0.23544303	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	11	0											1						23.579	23.579	4	0.01814	21172	DP690-11	66.201	66.201			1.0168	1.1046	NaN	1	0	Median	2657400	1308000	1349400	12169	797	11338	23617	57134	57134		0	9606
RPPGPTTSPASTSLSSPGQR	0	2	Unmodified	1980.0025	0.0024662011	1091	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	yes	yes	0	0	1	3	0			1														11.775	11.775	3	4.5825E-05	4348	DP690-3	90.968	74.043			0.47889	0.49541	NaN	1	0	Median	7275900	4714600	2561300	12170	1091	11339	23618	57135;57136	57135		2	9606
RPPINVAIDR	0	2	Unmodified	1149.6618	0.66184059	1040	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	1	15	0															1		12.848	12.848	2	0.043866	5936	DP690-15	74.173	21.457			0.65217	0.70747	NaN	1	0	Median	76625000	43762000	32863000	12171	1040	11340	23619	57137	57137		1	9606
RPPSPIKFDLNEPLHLSFLQNAAK	2	1	Unmodified	2731.481	0.48096968	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	2	3	0			1														19.089	19.089	4	1.3066E-07	13961	DP690-3	137.43	103.27			NaN	NaN	NaN	0	0	Median	18181000	18181000	0	12172	5	11341	23620	57138;57139	57138		2	9606
RPPSQSLTSSSLSSPDIFDSPSPEEDKEEHISLAHR	1	2	Unmodified	3961.893	0.89298192	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	2	13	0													1				16.015	16.015	5	1.0244E-15	10184	DP690-13	131.25	108.67			0.52273	0.57703	NaN	1	0	Median	149330000	89633000	59699000	12173	1823	11342	23621	57140;57141	57141		2	9606
RPQQPNPPSAPLVPGLLDQSNPLSTPMPK	1	1	Unmodified	3075.6175	0.61753952	1734	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	1	11	0											1						19.57	19.57	3	0.0036101	15974	DP690-11	68.234	37.874			NaN	NaN	NaN	0	0	Median	16825000	16825000	0	12174	1734	11343	23622	57142;57143	57142		2	9606
RPQTDQAVEFFIR	0	2	Unmodified	1605.8263	0.82633974	1623	Q8IYB5	SMAP1	Stromal membrane-associated protein 1	yes	yes	0	0	1	4	0				2													17.268	17.268	2;3	3.833E-05	11494	DP690-4	122.1	97.905			0.7994	0.8376	29.642	2	0	Median	83258000	45423000	37835000	12175	1623	11344	23623;23624	57144;57145;57146;57147	57147		4	9606
RPQYSNPPVQGEVMEGADNQGAGEQGR	0	2	Oxidation (M)	2886.2951	0.29509576	1025	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	1	13	0													1				12.659	12.659	3	2.3745E-17	5354	DP690-13	171.16	158.85			0.69179	0.79432	NaN	1	0	Median	68629000	38546000	30083000	12176	1025	11345	23625	57148;57149;57150;57151;57152;57153;57154	57151	1554	7	9606
RPQYSNPPVQGEVMEGADNQGAGEQGR	0	2	Unmodified	2870.3002	0.30018114	1025	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	13	0													1				13.719	13.719	3	6.806600000000001E-25	6909	DP690-13	192.89	183.04			0.8632	0.99113	NaN	1	0	Median	49280000	25412000	23868000	12177	1025	11345	23626	57155;57156;57157;57158	57156		4	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	0	3	Oxidation (M)	3238.5174	0.51738456	1025	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	2	11.2	3.63					1								2	1			12.385	12.385	3;4	1.2012E-12	5333	DP690-13	153.57	140.28			0.61715	0.65502	6.0472	4	0	Median	589440000	339330000	250110000	12178	1025	11346	23627;23628;23629;23630	57159;57160;57161;57162;57163;57164;57165;57166;57167;57168;57169;57170;57171;57172;57173;57174;57175;57176;57177	57162	1554	19	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	0	3	Unmodified	3222.5225	0.52246994	1025	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	2	10.3	3.77					1								2				13.3	13.3	3;4	3.9038E-09	6398	DP690-13	143.47	127.83			0.61045	0.63573	20.965	3	0	Plateau	327890000	189640000	138260000	12179	1025	11346	23631;23632;23633	57178;57179;57180;57181;57182;57183;57184;57185;57186;57187;57188;57189	57180		12	9606
RPSGTGTGPEDGRPSLGSPYGQPPR	0	3	Unmodified	2522.2262	0.22621156	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	2	12	3.46						1								3			12.55	12.55	3;4	6.0885E-05	5441	DP690-14	123.84	101.14			0.51011	0.54055	4.6156	2	0	Median	500320000	338810000	161510000	12180	820	11347	23634;23635;23636;23637	57190;57191;57192;57193;57194;57195;57196;57197;57198;57199;57200;57201	57191		11	9606
RPSPDEPMTNLELK	1	1	Oxidation (M)	1641.8032	0.80322103	2343	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	1	1	6	0						2											12.948	12.948	2;3	0.00057324	5552	DP690-6	90.476	76.5			0.63729	0.71422	4.3785	2	0	Median	27002000	16903000	10099000	12181	2343	11348	23638;23639	57202;57203;57204;57205;57206;57207;57208;57209	57203	2781	8	9606
RPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYR	0	2	Oxidation (M)	4094.9374	0.93737011	1808	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	1	1	13	0													1				17.261	17.261	4	1.351E-10	11918	DP690-13	94.949	80.896			NaN	NaN	NaN	0	0	Median	7537500	7537500	0	12182	1808	11349	23640	57210	57210	2386	1	9606
RPTAAELLK	1	1	Unmodified	997.59203	0.59202969	2332	Q9UEW8	STK39	STE20/SPS1-related proline-alanine-rich protein kinase	yes	yes	0	0	1	4	0				1													11.988	11.988	2	0.024313	4562	DP690-4	88.37	9.2536			0.73783	0.84151	NaN	1	0	Median	17730000	9839500	7890900	12183	2332	11350	23641	57211	57211		1	9606
RPTEICADPQFIIGGATR	0	2	Unmodified	2001.0102	0.010194116	513	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	1	3.33	0.471			2	1													17.004	17.004	3	2.2472E-05	11299	DP690-3	122.13	90.122			0.92841	0.96042	NaN	1	0	Median	52070000	18373000	33697000	12184	513	11351	23642;23643;23644	57212;57213;57214;57215;57216	57213		5	9606
RPTELLSNPQFIVDGATR	0	2	Unmodified	2013.0643	0.064338176	405	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	1	3	0			1														17.653	17.653	3	0.0031817	12236	DP690-3	67.644	50.9			0.70442	0.72871	NaN	1	0	Median	18547000	10726000	7820400	12185	405	11352	23645	57217;57218	57218		2	9606
RPTPQDNLTDAENGNIQLQAQR	0	2	Unmodified	2478.2211	0.22112618	764	P46934	NEDD4	E3 ubiquitin-protein ligase NEDD4	yes	yes	0	0	1	3	0			1														14.798	14.798	3	2.2192E-20	8396	DP690-3	193.63	172.18			0.6715	0.69466	NaN	1	0	Median	15704000	10627000	5076800	12186	764	11353	23646	57219;57220;57221;57222;57223;57224	57223		6	9606
RPTPQDSPIFLPVDDTSFR	0	2	Unmodified	2187.096	0.096032235	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		2															18.861	18.861	2;3	5.2448E-10	12185	DP690-2	146.67	130.09			0.63363	0.63286	5.3522	2	0	Median	132340000	79391000	52954000	12187	789	11354	23647;23648	57225;57226;57227;57228;57229;57230;57231;57232;57233	57225		9	9606
RPVGIGVYGHPSHLESEFEMK	1	1	Oxidation (M)	2384.1583	0.15831492	1548	Q7Z4R8	C6orf120	UPF0669 protein C6orf120	yes	yes	0	1	1	15	0															1		14.303	14.303	4	0.021805	7915	DP690-15	44.047	19.145			0.70409	0.81483	NaN	1	0	Median	26629000	13160000	13469000	12188	1548	11355	23649	57234	57234	2224	1	9606
RPVHGESDTEQLQDDDIETTK	1	1	Unmodified	2412.1041	0.10409032	2025	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	1	8	4				1								1					12.128	12.128	3	1.0257E-23	4942	DP690-12	204.51	192.13			0.70196	0.88285	NaN	1	0	Median	16156000	9662300	6493700	12189	2025	11356	23650;23651	57235;57236;57237;57238	57235		4	9606
RPVHLDQAAFR	0	2	Unmodified	1308.7051	0.70510239	2088	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	1	11	0											1						11.619	11.619	3	0.02274	4470	DP690-11	83.045	62.841			NaN	NaN	NaN	0	0	Median	31263000	31263000	0	12190	2088	11357	23652	57239	57239		1	9606
RPVINAGDGVGEHPTQALLDIFTIR	0	2	Unmodified	2688.4347	0.43474777	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	1	2	0		1															20.572	20.572	4	5.9725E-05	14171	DP690-2	111.99	98.801			1.0671	1.0658	NaN	1	0	Median	6177500	3025100	3152400	12191	602	11358	23653	57240;57241;57242	57241		3	9606
RPVQAWVESLR	0	2	Unmodified	1339.7361	0.73606817	2051	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	yes	yes	0	0	1	14	0														1			15.87	15.87	3	0.021876	10139	DP690-14	50.484	37.606			0.55066	0.64712	NaN	1	0	Median	21759000	11883000	9875900	12192	2051	11359	23654	57243;57244	57244		2	9606
RPYEPINSIK	1	1	Unmodified	1215.6612	0.66117189	1734	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	1	11	0											1						12.155	12.155	2	0.00069519	5211	DP690-11	123.86	43.409			0.70433	0.8621	NaN	1	0	Median	51906000	30806000	21100000	12193	1734	11360	23655	57245;57246	57245		2	9606
RQAVDVSPLR	0	2	Unmodified	1139.6411	0.64110515	761	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	1	15	0															1		11.96	11.96	2	0.00042927	4651	DP690-15	132.88	71.184			0.77732	0.84324	NaN	1	0	Median	89381000	49962000	39419000	12194	761	11361	23656	57247;57248;57249;57250	57250		4	9606
RQAVDVSPLRR	0	3	Unmodified	1295.7422	0.74221618	761	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	2	15	0															1		10.568	10.568	3	6.4548E-05	2955	DP690-15	138.76	98.889			0.81775	0.85876	NaN	1	0	Median	258900000	147290000	111600000	12195	761	11362	23657	57251;57252	57251		2	9606
RQDSDLVQCGVTSPSSAEATGK	1	1	Unmodified	2292.0652	0.065202392	2166	Q9HC52	CBX8	Chromobox protein homolog 8	yes	yes	0	0	1	13	0													1				13.242	13.242	3	1.3602E-06	6322	DP690-13	127.54	112.61			0.6448	0.77747	NaN	1	0	Median	36809000	21309000	15500000	12196	2166	11363	23658	57253;57254;57255;57256	57255		4	9606
RQEILSNAGLR	0	2	Unmodified	1255.6997	0.69968266	335	O95671	ASMTL	N-acetylserotonin O-methyltransferase-like protein	yes	yes	0	0	1	4	0				1													12.629	12.629	2	0.001081	5417	DP690-4	113.63	79.097			0.84163	0.88185	NaN	1	0	Median	7205100	3989300	3215800	12197	335	11364	23659	57257	57257		1	9606
RQELEAELAK	1	1	Unmodified	1185.6354	0.63535107	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	7	3.56		1							1	1							11.968	11.968	2	0.0002021	5095	DP690-10	150.35	97.024			0.73376	0.82906	16.957	3	0	Plateau	478330000	267580000	210760000	12198	1319	11365	23660;23661;23662	57258;57259;57260;57261;57262;57263;57264;57265;57266;57267;57268;57269	57260		12	9606
RQELEQVLGIR	0	2	Unmodified	1339.7572	0.75719754	1797	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	0	1	12	0												2					16.41	16.41	2;3	0.00044813	10983	DP690-12	155	95.935			0.80159	0.90888	13.057	2	0	Median	84973000	43418000	41555000	12199	1797	11366	23663;23664	57270;57271;57272	57270		3	9606
RQEQIQAMPLADSQAVR	0	2	Oxidation (M)	1955.9847	0.98470765	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	7	3.56		1							1	1							12.892	12.892	3	0.00016932	5730	DP690-9	99.021	64.3			0.72017	0.85775	25.965	3	0	Plateau	242980000	141400000	101570000	12200	1319	11367	23665;23666;23667	57273;57274;57275;57276;57277;57278;57279;57280;57281;57282;57283	57283	2031	11	9606
RQEQIQAMPLADSQAVR	0	2	Unmodified	1939.9898	0.98979302	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								14.337	14.337	3	0.00038441	7650	DP690-9	89.877	64.269			0.76414	0.8283	NaN	1	0	Median	24319000	14784000	9534400	12201	1319	11367	23668	57284	57284		1	9606
RQGVQVQVSTSNISSLEGAR	0	2	Unmodified	2115.1032	0.10324288	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		1															15.258	15.258	3	7.654E-07	8038	DP690-2	132.14	114.36			0.8674	0.86635	NaN	1	0	Median	9281600	5028900	4252700	12202	789	11368	23669	57285;57286	57286		2	9606
RQLEEAEEEAQR	0	2	Unmodified	1486.7012	0.7011988	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		2															10.784	10.784	2;3	2.086E-07	2860	DP690-2	202.65	157.05			0.9371	0.93597	18.307	2	0	Median	20926000	10412000	10514000	12203	668	11369	23670;23671	57287;57288;57289;57290;57291;57292;57293;57294	57287		8	9606
RQPNISVMQSPLVGVTSTPGTGQSMFSPASIGQPR	0	2	Oxidation (M)	3627.8137	0.8137495	1700	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	0	1	1	14	0														1			18.874	18.874	3	0.001142	14344	DP690-14	67.899	45.781			NaN	NaN	NaN	0	0	Median	10982000	10982000	0	12204	1700	11370	23672	57295;57296;57297	57297	2296	3	9606
RQQEELLAEENQR	0	2	Unmodified	1641.8071	0.80706086	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									2								11.98	11.98	2;3	2.1176E-05	4567	DP690-9	112.42	88.747			0.65467	0.70963	0.12142	2	0	Median	80560000	48923000	31637000	12205	1319	11371	23673;23674	57298;57299;57300;57301;57302;57303	57299		6	9606
RQQEQQVPILEK	1	1	Unmodified	1494.8154	0.8154407	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2.5	0.5		2	2														12.685	12.685	2;3	0.0025925	4757	DP690-2	59.225	26.795			0.78549	0.79199	4.3784	4	0	Median	140440000	79376000	61062000	12206	789	11372	23675;23676;23677;23678	57304;57305;57306;57307;57308;57309;57310;57311;57312;57313;57314;57315;57316;57317;57318;57319	57306		16	9606
RQQLEEQTVELSTEVQSLYR	0	2	Unmodified	2435.2292	0.22923125	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	1	10	0										1							19.351	19.351	3	6.261E-08	15799	DP690-10	143.52	103.13			0.69868	0.83216	NaN	1	0	Median	48095000	26288000	21807000	12207	1794	11373	23679	57320;57321	57320		2	9606
RQQQAATSESSQSEASVR	0	2	Unmodified	1948.9199	0.91985878	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	1	1.5	0.5	1	1															10.321	10.321	3	0.0046502	2192	DP690-1	62.658	62.658			1.5265	1.453	NaN	1	0	Median	2180800	764570	1416300	12208	1555	11374	23680;23681	57322;57323	57322		2	9606
RQVEEEILALK	1	1	Unmodified	1326.7507	0.75071518	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								15.794	15.794	2	0.0051927	9579	DP690-9	94.692	40.276			0.75394	0.87443	NaN	1	0	Median	27154000	14057000	13097000	12209	1319	11375	23682	57324;57325;57326	57325		3	9606
RRPCEQISPEEEER	0	3	Unmodified	1813.8377	0.83770906	499	P15407	FOSL1	Fos-related antigen 1	yes	yes	0	0	2	14	0														1			10.378	10.378	3	0.00014884	2641	DP690-14	112.42	90.563			0.95204	1.0298	NaN	1	0	Median	51822000	25774000	26047000	12210	499	11376	23683	57327;57328;57329	57329		3	9606
RRQEQIQAMPLADSQAVR	0	3	Oxidation (M)	2112.0858	0.085818675	1319	Q15149	PLEC	Plectin	yes	yes	0	1	2	10	0										2							11.71	11.71	3;4	0.0059668	4795	DP690-10	62.438	47.824			0.88925	0.91313	9.5481	2	0	Median	176570000	96105000	80465000	12211	1319	11377	23684;23685	57330;57331	57331	2031	2	9606
RRQEQIQAMPLADSQAVR	0	3	Unmodified	2096.0909	0.090904053	1319	Q15149	PLEC	Plectin	yes	yes	0	0	2	9.5	0.5									1	1							13.13	13.13	4	0.0017682	6818	DP690-10	85.362	55.471			0.66779	0.68793	6.6294	2	0	Median	138170000	77308000	60859000	12212	1319	11377	23686;23687	57332;57333;57334	57333		2	9606
RSELEEQQMHLNVGLR	0	2	Oxidation (M)	1953.9691	0.96905758	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	1	9	0									1								13.505	13.505	3	0.00023211	6489	DP690-9	95.662	77.197			0.81679	0.88536	NaN	1	0	Median	17963000	10168000	7795700	12213	1264	11378	23688	57335;57336	57335	1926	2	9606
RSEVVESTTESQDKENSHQK	2	1	Unmodified	2317.0782	0.078209919	1446	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	2	10	0										1							10.252	10.252	4	2.3918E-06	2568	DP690-10	133.93	112.98			0.87857	1.0026	NaN	1	0	Median	55764000	28883000	26881000	12214	1446	11379	23689	57337;57338;57339;57340	57337		4	9606
RSGPTDDGEEEMEEDTVTNGS	0	1	Oxidation (M)	2269.8765	0.87645815	438	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	1	1	11	4							1								1		12.972	12.972	2	1.4402999999999998E-19	5789	DP690-7	194.67	194.67			0.62223	0.71822	33.547	2	0	Median	21621000	13736000	7885100	12215	438	11380	23690;23691	57341;57342;57343;57344;57345;57346;57347;57348	57345	508	8	9606
RSIQFVDWCPTGFK	1	1	Unmodified	1739.8454	0.84536062	1032;1033	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	1	9	4					1								1				18.282	18.282	3	0.00065669	13288	DP690-13	90.498	63.243			0.9731	1.0755	4.6423	2	0	Median	205340000	95786000	109560000	12216	1032;1033	11381	23692;23693	57349;57350;57351;57352;57353;57354	57350		6	9606
RSLSGSADENPSCGTGSER	0	2	Unmodified	1965.8446	0.84464493	1584	Q86X51	CXorf67	Uncharacterized protein CXorf67	yes	yes	0	0	1	12.5	0.5												1	1				10.393	10.393	3	0.0007864	2644	DP690-13	75.533	52.306			0.94941	1.0901	NaN	1	0	Median	29421000	20348000	9072400	12217	1584	11382	23694;23695	57355;57356;57357	57357		3	9606
RSPRPQDLIR	0	3	Unmodified	1236.7051	0.70510239	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	2	12	0												1					11.716	11.716	3	0.0036074	4400	DP690-12	87.789	71.826			0.35624	0.39258	NaN	1	0	Median	19069000	14095000	4974400	12218	2342	11383	23696	57358;57359	57359		2	9606
RTCEEHQLCVVAVLPHILDTGAAGR	0	2	Unmodified	2801.4065	0.40650089	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	1	13	0													1				18.131	18.131	4	0.00076136	13051	DP690-13	65.881	55.881			0.72317	0.83035	NaN	1	0	Median	29143000	16413000	12730000	12219	1318	11384	23697	57360;57361	57360		2	9606
RTEGVGPGVPGEVEMVK	1	1	Oxidation (M)	1755.8825	0.88253399	600	P27361	MAPK3	Mitogen-activated protein kinase 3	yes	yes	0	1	1	6	0						1											13.384	13.384	3	0.030558	6155	DP690-6	45.577	23.745			0.6649	0.74515	NaN	1	0	Median	12397000	6179200	6217300	12220	600	11385	23698	57362	57362	803	1	9606
RTEITIVKPQESAHR	1	2	Unmodified	1763.9642	0.9642302	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	2	12	0												1					10.478	10.478	4	2.0692E-05	2817	DP690-12	139.34	139.34			0.72159	0.78549	NaN	1	0	Median	257730000	133720000	124010000	12221	2344	11386	23699	57363	57363		1	9606
RTELSIDISSK	1	1	Unmodified	1247.6721	0.67213051	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	1	12	0												1					13.934	13.934	2	0.017454	7520	DP690-12	119.22	21.41			NaN	NaN	NaN	0	0	Median	19702000	19702000	0	12222	2344	11387	23700	57364	57364		1	9606
RTGAIVDVPVGEELLGR	0	2	Unmodified	1779.9843	0.98429694	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	13	0													1				18.308	18.308	3	0.00039332	13250	DP690-13	89.669	78.079			0.70073	0.80458	NaN	1	0	Median	31450000	16958000	14492000	12223	585	11388	23701	57365;57366	57365		2	9606
RTIAQDYGVLK	1	1	Unmodified	1262.6983	0.69828568	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	11.5	3.5								1							1		14.123	14.123	2	0.00019787	7051	DP690-8	130.41	80.379			0.88795	0.98665	5.9942	2	0	Median	426520000	231100000	195430000	12224	1128	11389	23702;23703	57367;57368;57369;57370;57371;57372	57371		6	9606
RTIIIEDNR	0	2	Unmodified	1128.6251	0.62512073	2023	Q9BVV7	TIMM21	Mitochondrial import inner membrane translocase subunit Tim21	yes	yes	0	0	1	16	0																1	11.07	11.07	2	0.018452	3660	DP690-16	91.087	34.829			0.86322	0.91201	NaN	1	0	Median	8143200	4230000	3913200	12225	2023	11390	23704	57373	57373		1	9606
RTIQFVDWCPTGFK	1	1	Unmodified	1753.861	0.86101068	1521;1977;452	P0DPH7;P0DPH8;Q6PEY2;Q71U36;Q9BQE3	TUBA3E;TUBA1A;TUBA1C	Tubulin alpha-3E chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	5	0					1												18.385	18.385	3	0.0012469	12398	DP690-5	83.823	55.84			0.9969	1.0687	NaN	1	0	Median	55380000	25397000	29983000	12226	452;1521;1977	11391	23705	57374;57375	57375		2	9606
RTNSTFNQVVLK	1	1	Unmodified	1405.7678	0.76776222	1129	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	15	0															1		13.038	13.038	2	0.0009049	6105	DP690-15	102.06	52.711			1.0653	1.2457	NaN	1	0	Median	19231000	9502800	9728400	12227	1129	11392	23706	57376;57377;57378	57378		3	9606
RTPGRPTSSQSYEQNIK	1	2	Unmodified	1947.9763	0.97625145	212	O60573	EIF4E2	Eukaryotic translation initiation factor 4E type 2	yes	yes	0	0	2	15	0															2		10.364	10.364	3;4	0.00035601	2709	DP690-15	98.676	66.336			0.69339	0.75399	2.5634	2	0	Median	120750000	70241000	50513000	12228	212	11393	23707;23708	57379;57380;57381;57382	57381		4	9606
RTSSAQVEGGVHSLHSYEK	1	1	Unmodified	2071.0083	0.0082798605	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	1	4	0				1													10.779	10.779	4	0.00017076	3241	DP690-4	108.71	90.557			1.2358	1.4095	NaN	1	0	Median	11399000	5258700	6140200	12229	474	11394	23709	57383;57384	57384		2	9606
RTTYLVLDEADR	0	2	Unmodified	1450.7416	0.74160705	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	12	0												2					14.923	14.923	2;3	7.0891E-10	8863	DP690-12	259.75	186.9			0.77001	0.87307	21.417	2	0	Median	229790000	133540000	96247000	12230	517	11395	23710;23711	57385;57386;57387;57388;57389;57390;57391;57392	57388		8	9606
RVAEELALEQAK	1	1	Unmodified	1355.7409	0.74087877	2250	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	1	15	0															1		13.156	13.156	2	0.011648	6255	DP690-15	125.72	82.069			NaN	NaN	NaN	0	0	Median	0	0	0	12231	2250	11396	23712	57393	57393		1	9606
RVAEELALEQAKK	2	1	Unmodified	1483.8358	0.83584179	2250	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	2	15	0															1		11.648	11.648	3	0.0018059	4269	DP690-15	114.7	72.709			NaN	NaN	NaN	0	0	Median	16630000	16630000	0	12232	2250	11397	23713	57394;57395	57395		2	9606
RVASGPSPGEGISPQSAQAPQAPGDNHVVPVLR	0	2	Unmodified	3274.6807	0.68068514	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	1	3	0			1														15.068	15.068	4	1.4103E-05	8787	DP690-3	64.806	44.53			0.46974	0.48594	NaN	1	0	Median	9723700	6554800	3168800	12233	1293	11398	23714	57396;57397;57398	57397		3	9606
RVASSPAPPEGPSHPR	0	2	Unmodified	1640.8383	0.83830141	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	1	9	0									1								10.142	10.142	3	0.067844	2341	DP690-9	57.499	28.008			NaN	NaN	NaN	0	0	Median	522440	522440	0	12234	106	11399	23715	57399	57399		1	9606
RVCEEIAIIPSK	1	1	Unmodified	1413.765	0.76498503	425	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	1	16	0																1	14.546	14.546	2	0.0032137	8012	DP690-16	110.38	84.681			0.81403	0.92206	NaN	1	0	Median	15255000	7203400	8051600	12235	425	11400	23716	57400;57401;57402	57402		3	9606
RVCEEIAIIPSKK	2	1	Unmodified	1541.8599	0.85994805	425	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	2	16	0																1	12.756	12.756	3	0.016321	5613	DP690-16	65.704	65.704			0.72124	0.79676	NaN	1	0	Median	64690000	36583000	28106000	12236	425	11401	23717	57403;57404	57403		2	9606
RVDALNDEIR	0	2	Unmodified	1199.6258	0.62584901	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	1	10	0										1							12.651	12.651	2	0.017828	6028	DP690-10	86.189	44.76			1.3059	1.5554	NaN	1	0	Median	61760000	24101000	37660000	12237	2424	11402	23718	57405	57405		1	9606
RVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLR	1	2	Unmodified	4142.9193	0.91925625	1967	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	yes	yes	0	0	2	16	0																1	20.798	20.798	4	1.0512E-12	15627	DP690-16	115.3	100.07			0.60464	0.63035	NaN	1	0	Median	14364000	8124400	6239400	12238	1967	11403	23719	57406;57407;57408	57407		3	9606
RVDIIPGFEFDR	0	2	Unmodified	1462.7569	0.75686319	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	1	4	0				1													18.936	18.936	3	0.061207	13453	DP690-4	54.199	28.069			NaN	NaN	NaN	0	0	Median	3549600	3549600	0	12239	2116	11404	23720	57409	57409		1	9606
RVDPVYIHLAER	0	2	Unmodified	1466.7994	0.7993967	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0		1															13.995	13.995	3	0.015734	6504	DP690-2	58.32	35.094			1.0392	1.0379	NaN	1	0	Median	14836000	6726500	8109100	12240	1179	11405	23721	57410;57411	57411		2	9606
RVEGIQYEDISK	1	1	Unmodified	1435.7307	0.73070802	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	1	13	0													2				13.414	13.414	2;3	0.00019187	6501	DP690-13	177.57	130.34			0.71365	0.75268	NaN	1	0	Median	331850000	176550000	155300000	12241	229	11406	23722;23723	57412;57413;57414;57415;57416;57417	57414		6	9606
RVEILNEHR	0	2	Unmodified	1164.6364	0.63635412	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	1	2	0		1															10.468	10.468	3	0.0057988	2483	DP690-2	88.056	21.866			NaN	NaN	NaN	0	0	Median	598220	598220	0	12242	2215	11407	23724	57418	57418		1	9606
RVEISAPSNFEHR	0	2	Unmodified	1540.7746	0.77463852	350	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	0	1	12	0												1					12.573	12.573	3	0.00065516	5625	DP690-12	91.712	70.08			0.86098	0.97622	NaN	1	0	Median	63629000	36735000	26894000	12243	350	11408	23725	57419;57420;57421	57419		3	9606
RVEPGSPAEAAALR	0	2	Unmodified	1422.7579	0.75792582	1339	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	yes	yes	0	0	1	14	0														1			12.322	12.322	3	0.038534	5049	DP690-14	48.214	11.642			0.37511	0.44082	NaN	1	0	Median	68987000	47396000	21591000	12244	1339	11409	23726	57422;57423	57422		2	9606
RVEPLRNELQK	1	2	Unmodified	1380.7837	0.78374664	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	2	9	0									1								10.534	10.534	3	0.023939	2832	DP690-9	63.184	32.36			0.64802	0.7287	NaN	1	0	Median	12429000	7351900	5076700	12245	1264	11410	23727	57424	57424		1	9606
RVEVVEEDGPSEK	1	1	Unmodified	1471.7155	0.71545188	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	1	12	0.894											2	1	2				10.817	10.817	2;3	9.0919E-08	3324	DP690-11	215.77	131.15			0.77718	0.86575	10.115	3	0	Plateau	483290000	258250000	225040000	12246	144	11411	23728;23729;23730;23731;23732	57425;57426;57427;57428;57429;57430;57431;57432;57433;57434;57435;57436;57437;57438;57439	57426		15	9606
RVGFQYEGTYK	1	1	Unmodified	1346.6619	0.66190017	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	1	4	0				2													13.052	13.052	2	0.016277	5947	DP690-4	128.91	63.681			NaN	NaN	NaN	0	0	Median	0	0	0	12247	469	11412	23733;23734	57440;57441	57440		2	9606
RVGIVAWHPTAR	0	2	Unmodified	1361.768	0.768037	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	1	13	0													1				12.672	12.672	3	0.0016917	5554	DP690-13	83.226	83.226			0.86839	0.99709	NaN	1	0	Median	119930000	60085000	59846000	12248	2395	11413	23735	57442;57443	57443		2	9606
RVHNNIVYNEYISHR	0	2	Unmodified	1912.9656	0.96562718	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	1	13	0													1				12.397	12.397	4	3.9307E-06	5156	DP690-13	134.4	134.4			0.84825	0.97397	NaN	1	0	Median	85330000	47815000	37515000	12249	229	11414	23736	57444;57445	57444		2	9606
RVLGLVLLR	0	2	Unmodified	1037.7073	0.70733422	492	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	0	1	15	0															1		17.053	17.053	2	0.0039158	11538	DP690-15	117.16	45.022			0.87042	0.94423	NaN	1	0	Median	52504000	30429000	22076000	12250	492	11415	23737	57446;57447	57446		2	9606
RVLQALEGLK	1	1	Unmodified	1125.687	0.68699271	697	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	1	12	4								1								1	14.8	14.8	2	0.00014952	8273	DP690-16	166.09	98.191			0.93848	1.0204	10.462	2	0	Median	331080000	170130000	160950000	12251	697	11416	23738;23739	57448;57449;57450;57451;57452;57453	57449		6	9606
RVLSGEFQIVNPHLLK	1	1	Unmodified	1849.0574	0.057402305	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	1	3	0			1														16.714	16.714	3	0.00025678	10912	DP690-3	96.489	81.097			0.68655	0.76143	NaN	1	0	Median	30251000	17880000	12371000	12252	574	11417	23740	57454;57455;57456	57454		3	9606
RVLVTQQFPCQNPLPVNSGQAQR	0	2	Unmodified	2636.3605	0.36053697	124	O14965	AURKA	Aurora kinase A	yes	yes	0	0	1	13	0													1				15.845	15.845	3	0.00026873	10031	DP690-13	96.181	84.87			0.72674	0.83446	NaN	1	0	Median	30412000	15922000	14489000	12253	124	11418	23741	57457;57458;57459;57460;57461	57460		5	9606
RVNILSDMHLR	0	2	Unmodified	1352.7347	0.73468796	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	12	0												1					15.046	15.046	3	8.714E-05	9069	DP690-12	119.74	97.697			0.92894	1.0533	NaN	1	0	Median	113000000	52017000	60984000	12254	829	11419	23742	57462;57463	57463		2	9606
RVNSASSSNPPAEVDPDTILK	1	1	Unmodified	2196.1022	0.10223983	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	1	13	0													2				15.27	15.27	2;3	5.3052E-07	9079	DP690-13	136.46	112.74			0.61973	0.6798	NaN	1	0	Median	160280000	93879000	66402000	12255	2045	11420	23743;23744	57464;57465;57466	57465		3	9606
RVPATTLYAHFEQANIK	1	1	Unmodified	1958.0374	0.037395144	1539	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	1	12	0												1					15.187	15.187	3	0.0024907	9279	DP690-12	71.402	56.164			1.0063	1.2674	NaN	1	0	Median	40358000	18890000	21467000	12256	1539	11421	23745	57467	57467		1	9606
RVPLTALLNQSR	0	2	Unmodified	1366.8045	0.80448208	2101	Q9H2D6	TRIOBP	TRIO and F-actin-binding protein	yes	yes	0	0	1	12	0												1					15.899	15.899	3	0.0013551	10194	DP690-12	86.262	67.163			0.60082	0.68124	NaN	1	0	Median	25281000	13495000	11786000	12257	2101	11422	23746	57468;57469	57468		2	9606
RVTAYTVDVTGR	0	2	Unmodified	1336.7099	0.709913	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9	0									1								13.112	13.112	2	0.0050423	5971	DP690-9	136.53	88.439			NaN	NaN	NaN	0	0	Median	7525500	0	7525500	12258	1145	11423	23747	57470;57471	57471		2	9606
RVTFLCGDAGPLAVGAVIYHK	1	1	Unmodified	2243.1885	0.18849283	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	1	5	0					1												18.516	18.516	4	0.00043832	12506	DP690-5	63.869	49.997			0.68755	0.7371	NaN	1	0	Median	46691000	27879000	18812000	12259	2208	11424	23748	57472	57472		1	9606
RVVHLGVGTPGR	0	2	Unmodified	1246.7258	0.72583783	1975	Q9BQ75	CMSS1	Protein CMSS1	yes	yes	0	0	1	14	0														1			10.521	10.521	3	0.0012493	2861	DP690-14	87.216	87.216			1.5311	1.7993	NaN	1	0	Median	77931000	29986000	47945000	12260	1975	11425	23749	57473;57474	57473		2	9606
RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR	0	2	Unmodified	3202.6259	0.6258556	1220	Q13541	EIF4EBP1	Eukaryotic translation initiation factor 4E-binding protein 1	yes	yes	0	0	1	8	0								2									19.207	19.207	3	1.2595E-06	12634	DP690-8	91.779	68.892			NaN	NaN	NaN	0	0	Median	1894700	1894700	0	12261	1220	11426	23750;23751	57475;57476;57477	57475		3	9606
RVYATILNAGTNTDGFK	1	1	Unmodified	1839.9479	0.94791144	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		2															15.911	15.911	2;3	1.3071E-05	8797	DP690-2	145.49	112.49			0.91488	0.90061	1.8701	2	0	Median	39336000	21255000	18082000	12262	789	11427	23752;23753	57478;57479;57480;57481;57482;57483;57484;57485;57486;57487	57484		10	9606
RWEVADLQPQLK	1	1	Unmodified	1481.7991	0.79906235	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	1	13	0													2				16.723	16.723	2;3	0.0001521	11079	DP690-13	110.8	90.018			0.75579	0.83149	2.1532	2	0	Median	310850000	179890000	130960000	12263	565	11428	23754;23755	57488;57489;57490;57491;57492;57493;57494;57495	57490		8	9606
RYASGSSASLGGPESAVA	0	1	Unmodified	1665.7958	0.79582747	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							13.899	13.899	2	0.038335	7051	DP690-9	61.423	43.828			0.63515	0.79362	15.079	2	0	Median	75817000	43575000	32242000	12264	1319	11429	23756;23757	57496;57497	57497		2	9606
RYAVPSAGLR	0	2	Unmodified	1088.6091	0.60907674	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								12.385	12.385	2	0.079971	5072	DP690-9	68.657	39.184			0.66015	0.71558	NaN	1	0	Median	16128000	9551500	6576800	12265	1046	11430	23758	57498	57498		1	9606
RYDALSEHNLK	1	1	Unmodified	1344.6786	0.67861287	2380	Q9UKY1	ZHX1	Zinc fingers and homeoboxes protein 1	yes	yes	0	0	1	11	0											1						10.967	10.967	3	0.076504	3543	DP690-11	36	21.438			0.70818	0.85403	NaN	1	0	Median	64200000	34468000	29731000	12266	2380	11431	23759	57499	57499		1	9606
RYDLEQGLGDLLTER	0	2	Unmodified	1776.9006	0.90062689	1448	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	1	11	0											1						20.243	20.243	3	0.072148	16933	DP690-11	68.329	48.562			0.79831	0.9841	NaN	1	0	Median	39803000	24350000	15453000	12267	1448	11432	23760	57500	57500		0	9606
RYELPAPSSGQK	1	1	Unmodified	1331.6834	0.68336389	280	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	1	15	0															1		11.809	11.809	2	0.0005049	4488	DP690-15	120.77	61.421			0.65212	0.78076	NaN	1	0	Median	7212400	3929900	3282500	12268	280	11433	23761	57501;57502	57502		2	9606
RYESHPVCADLQAK	1	1	Unmodified	1672.7991	0.79913871	2250	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	1	15	0															1		10.549	10.549	3	0.024126	2958	DP690-15	104.09	69.99			0.78698	0.87577	NaN	1	0	Median	91589000	39843000	51746000	12269	2250	11434	23762	57503	57503		0	9606
RYLENGKETLQR	1	2	Unmodified	1505.795	0.79503961	454;372	P10321;P30511;P04439;P01893	HLA-C;HLA-F;HLA-A;HLA-H	HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, alpha chain F;HLA class I histocompatibility antigen, A-3 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H	no	no	0	0	2	14	0														1			10.45	10.45	3	0.018596	2727	DP690-14	92.295	40.832			NaN	NaN	NaN	0	0	Median	0	0	0	12270	454;372	11435	23763	57504	57504		1	9606
RYNFPVEVEVPMER	0	2	Oxidation (M)	1779.8614	0.86140461	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	9	0									1								16.866	16.866	3	0.0071653	10903	DP690-9	65.038	39.721			0.64851	0.70295	NaN	1	0	Median	40332000	23204000	17129000	12271	1046	11436	23764	57505;57506;57507;57508	57507	1635	4	9606
RYPTAEEILVLGGYLR	0	2	Unmodified	1849.0098	0.0097834104	1480	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	1	11	0											1						21.216	21.216	3	0.038193	18324	DP690-11	45.723	21.842			0.46354	0.57141	NaN	1	0	Median	17637000	9947100	7689600	12272	1480	11437	23765	57509	57509		1	9606
RYQKSTELLIR	1	2	Unmodified	1405.8041	0.80414773	1036;1444	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	2	16	0																1	11.399	11.399	3	0.001075	3984	DP690-16	97.163	79.33			0.90818	0.95224	NaN	1	0	Median	10106000	5373300	4733200	12273	1036;1444	11438	23766	57510;57511	57511		2	9606
SAADEVDGLGVARPHYGSVLDNER	0	2	Acetyl (Protein N-term)	2568.2205	0.22045748	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	1	0	1	6	4		1								1							17.482	17.482	3	1.0789E-05	13082	DP690-10	118.23	86.593			1.2932	1.2916	NaN	1	0	Median	62872000	59763000	3109400	12274	766	11439	23767;23768	57512;57513;57514;57515;57516;57517	57512		6	9606
SAADSISESVPVGPK	1	0	Unmodified	1442.7253	0.72528829	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	5.5	2.5			1					1									15.225	15.225	2	1.2154E-05	8852	DP690-3	169.52	147.18			0.63101	0.69033	14.387	2	0	Median	89702000	52877000	36825000	12275	746	11440	23769;23770	57518;57519;57520;57521;57522;57523	57519		6	9606
SAAEAGGVFHR	0	1	Acetyl (Protein N-term)	1142.5469	0.54687041	1981	Q9BRF8	CPPED1	Serine/threonine-protein phosphatase CPPED1	yes	yes	1	0	0	6	0						3											14.479	14.479	2	1.132E-05	7500	DP690-6	185.72	147.91			NaN	NaN	NaN	0	0	Median	0	0	0	12276	1981	11441	23771;23772;23773	57524;57525;57526	57524		3	9606
SAAMLGNSEDHTALSR	0	1	Oxidation (M)	1674.7631	0.76314713	219	O60749	SNX2	Sorting nexin-2	yes	yes	0	1	0	4	0				1													11.537	11.537	3	1.5953E-05	4135	DP690-4	125.67	99.689			0.96705	1.1218	NaN	1	0	Median	5853600	2418100	3435500	12277	219	11442	23774	57527;57528	57527	223	2	9606
SAAPSTLDSSSTAPAQLGK	1	0	Unmodified	1787.8901	0.89012178	2502	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	15	0															1		13.993	13.993	2	3.5762E-30	7379	DP690-15	243.37	179.94			0.76505	0.85176	NaN	1	0	Median	124620000	52266000	72354000	12278	2502	11443	23775	57529;57530	57529		2	9606
SAAQMEVASFLLSK	1	0	Unmodified	1480.7596	0.7595653	1163	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	0	0	12	0												1					20.9	20.9	2	8.3436E-05	16999	DP690-12	160.86	127.82			1.058	1.2715	NaN	1	0	Median	24338000	12076000	12262000	12279	1163	11444	23776	57531;57532;57533;57534	57534		4	9606
SAAQMEVASFLLSK	1	0	Oxidation (M)	1496.7545	0.75447993	1163	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	1	0	13	0													1				19.677	19.677	2	0.002449	15011	DP690-13	94.191	64.448			0.77659	0.90225	NaN	1	0	Median	33042000	14942000	18100000	12280	1163	11444	23777	57535;57536	57535	1811	2	9606
SAATLITHPFHVITLR	0	1	Unmodified	1776.0046	0.004638453	2517	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	13.4	2.24									1					2	2		17.274	17.274	3;4	5.1581E-18	11979	DP690-14	223.06	223.06			0.72649	0.81682	4.6773	5	0	Median	1448900000	829250000	619640000	12281	2517	11445	23778;23779;23780;23781;23782	57537;57538;57539;57540;57541;57542;57543;57544;57545;57546;57547;57548;57549;57550;57551;57552	57544		16	9606
SAATSGAGSTTSGVVSGSLGSR	0	1	Unmodified	1895.9185	0.9184618	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															13.783	13.783	2	4.5501E-83	6257	DP690-2	356.36	308.37			0.99673	1.0419	NaN	1	0	Median	10079000	5234700	4843900	12282	1555	11446	23783	57553;57554;57555;57556;57557	57553		5	9606
SACDTVDTWLDDTAK	1	0	Unmodified	1696.725	0.72503029	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								19.321	19.321	2	1.3493E-05	14014	DP690-9	127.17	110.04			0.74438	0.94837	NaN	1	0	Median	8391500	5631200	2760300	12283	1264	11447	23784	57558;57559;57560	57558		3	9606
SACGNCYLGDAFR	0	1	Unmodified	1489.6078	0.60783246	1470	Q6FI81	CIAPIN1	Anamorsin	yes	yes	0	0	0	6	0						1											16.504	16.504	2	0.015329	9936	DP690-6	72.652	70.032			0.77798	0.87513	NaN	1	0	Median	3151600	2009900	1141700	12284	1470	11448	23785	57561	57561		1	9606
SACSLESNLEGLAGVLEADLPNYK	1	0	Unmodified	2549.2319	0.23193337	1143	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	11	0											2						25.525	25.525	2	4.705E-08	23447	DP690-11	131.82	106.5			NaN	NaN	NaN	0	0	Median	2061800	2061800	0	12285	1143	11449	23786;23787	57562;57563;57564	57562		3	9606
SACSNNPSYIDR	0	1	Unmodified	1382.5885	0.58847723	2483	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	9	0									1								11.489	11.489	2	0.004033	4002	DP690-9	88.134	62.996			0.87546	1.091	NaN	1	0	Median	3306400	1653600	1652800	12286	2483	11450	23788	57565;57566	57566		2	9606
SADAGSFSPTPGQIGGAVK	1	0	Unmodified	1745.8584	0.85842773	86	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	10	0										1							15.758	15.758	2	3.7848E-06	10661	DP690-10	129.37	107.74			0.85574	1.0519	NaN	1	0	Median	43419000	22074000	21345000	12287	86	11451	23789	57567	57567		1	9606
SADEGQTVFYTCTNCK	1	0	Unmodified	1879.7717	0.77166291	2297	Q9P1U0	ZNRD1	DNA-directed RNA polymerase I subunit RPA12	yes	yes	0	0	0	16	0																1	14.78	14.78	2	5.1221E-24	8243	DP690-16	273.24	254.91			0.86491	1.0119	NaN	1	0	Median	18196000	9978900	8217100	12288	2297	11452	23790	57568;57569;57570;57571;57572	57572		5	9606
SADESGQALLAAGHYASDEVR	0	1	Unmodified	2145.9927	0.99268938	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							16.964	16.964	3	1.1479E-05	12403	DP690-10	124.73	106.5			0.76132	0.9384	NaN	1	0	Median	136980000	76267000	60714000	12289	1236	11453	23791	57573;57574;57575;57576	57573		4	9606
SADFVVEAIGDDVGTLGFSVEGPSQAK	1	0	Unmodified	2694.3025	0.30245578	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.4	1.02									1	2	1	1					23.872	23.872	2	6.502100000000001E-69	21751	DP690-10	308.73	274.94			0.76121	0.96106	15.889	5	0	Median	59306000	32753000	26553000	12290	549	11454	23792;23793;23794;23795;23796	57577;57578;57579;57580;57581;57582;57583;57584;57585;57586;57587;57588;57589;57590;57591;57592;57593;57594;57595;57596;57597	57577		21	9606
SADFVVEAIGTEVGTLGFSIEGPSQAK	1	0	Unmodified	2708.3545	0.35449135	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	9	0									2								25.288	25.288	2	0.0023541	20813	DP690-9	124.29	97.023			NaN	NaN	NaN	0	0	Median	834040	459880	374170	12291	1270	11455	23797;23798	57598;57599	57598		2	9606
SADFVVESIGSEVGSLGFAIEGPSQAK	1	0	Unmodified	2680.3232	0.32319122	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							24.43	24.43	2	3.0346E-05	22437	DP690-10	105.5	85.973			NaN	NaN	NaN	0	0	Median	0	0	0	12292	250	11456	23799	57600	57600		1	9606
SADGLTASCLCPATCR	0	1	Unmodified	1738.7437	0.74367402	88	O00468	AGRN	Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment	yes	yes	0	0	0	9	0									1								15.264	15.264	2	0.070408	8843	DP690-9	84.718	53.431			NaN	NaN	NaN	0	0	Median	0	0	0	12293	88	11457	23800	57601	57601		1	9606
SADGSAPAGEGEGVTLQR	0	1	Unmodified	1700.7966	0.79655575	1086	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	10.3	3.3						1					1			1			13.29	13.29	2	2.6788999999999996E-19	6525	DP690-14	194.86	159.27			NaN	NaN	NaN	0	0	Median	14965000	14965000	0	12294	1086	11458	23801;23802;23803	57602;57603;57604;57605	57604		4	9606
SAEAYENFLR	0	1	Unmodified	1198.5619	0.56185177	1927	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	10	0										1							17.203	17.203	2	0.05897	12714	DP690-10	86.136	51.883			NaN	NaN	NaN	0	0	Median	0	0	0	12295	1927	11459	23804	57606	57606		1	9606
SAECIDEAAER	0	1	Unmodified	1249.5245	0.52447999	1627	Q8IYS1	PM20D2	Peptidase M20 domain-containing protein 2	yes	yes	0	0	0	5	0					2												11.668	11.668	2	0.00018135	4106	DP690-5	153.24	122.02			0.96329	1.0113	NaN	1	0	Median	17647000	9396900	8250200	12296	1627	11460	23805;23806	57607;57608;57609;57610;57611	57609		5	9606
SAEEGELAESK	1	0	Unmodified	1148.5197	0.51971219	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										1							10.823	10.823	2	0.01231	3423	DP690-10	107.21	77.13			NaN	NaN	NaN	0	0	Median	0	0	0	12297	2065	11461	23807	57612	57612		1	9606
SAEELKEMQDK	2	0	Unmodified	1306.6075	0.60748134	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	1	8	3.56			1							1	1						11.001	11.001	2	0.005825	3651	DP690-11	169.99	125.62			0.58915	0.64876	NaN	1	0	Median	28447000	2038300	26408000	12298	317	11462	23808;23809;23810	57613;57614;57615;57616	57614		4	9606
SAEETFQLSR	0	1	Unmodified	1166.5568	0.5567664	68	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	12	0												1					14.599	14.599	2	0.0001443	8389	DP690-12	136.57	66.742			0.86987	1.0325	NaN	1	0	Median	52746000	26752000	25995000	12299	68	11463	23811	57617	57617		1	9606
SAEFLLHMLK	1	0	Oxidation (M)	1203.6322	0.63217995	529	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	1	0	15	0															4		15.864	15.864	2;3	0.00069045	10028	DP690-15	141.52	97.317			1.0613	1.2245	NaN	1	0	Median	134870000	108750000	26123000	12300	529	11464	23812;23813;23814;23815	57618;57619;57620;57621;57622	57619	682	5	9606
SAEIDSDDTGGSAAQK	1	0	Unmodified	1550.6696	0.6696239	648	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	3	0			2														10.55	10.55	2	2.0146E-35	2874	DP690-3	229.29	175.54			NaN	NaN	NaN	0	0	Median	10549000	0	10549000	12301	648	11465	23816;23817	57623;57624;57625	57623		3	9606
SAELAAALLSIYMER	0	1	Oxidation (M)	1652.8444	0.84435757	1993	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	1	0	3	0			1														22.71	22.71	2	0.0024571	18295	DP690-3	125.54	83.541			NaN	NaN	NaN	0	0	Median	2273800	0	2273800	12302	1993	11466	23818	57626;57627	57627	2531	2	9606
SAEPSPTVMSTSLGSNLSELDR	0	1	Oxidation (M)	2293.0744	0.074370095	786	P49023	PXN	Paxillin	yes	yes	0	1	0	4	0				1													17.637	17.637	2	4.7855999999999997E-23	11933	DP690-4	201.4	201.4			0.75819	0.8792	NaN	1	0	Median	5665900	3360900	2305000	12303	786	11467	23819	57628;57629;57630;57631;57632	57629	1170	5	9606
SAEQLTTFLK	1	0	Unmodified	1136.6077	0.60773933	299	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	2	0		1															17.633	17.633	2	0.032548	10892	DP690-2	70.056	45.238			0.76268	0.75373	NaN	1	0	Median	2795600	1570300	1225300	12304	299	11468	23820	57633	57633		1	9606
SAEREEQEESVYNLYISEVR	0	2	Unmodified	2429.1347	0.13466217	1102	Q03001	DST	Dystonin	yes	yes	0	0	1	9	0									1								18.494	18.494	3	0.00027014	12947	DP690-9	92.932	80.261			1.2642	1.3704	NaN	1	0	Median	6595700	3234800	3360900	12305	1102	11469	23821	57634	57634		1	9606
SAESPQDAADLFTDLENAFQGK	1	0	Unmodified	2353.071	0.070999276	1837	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	11	0											1						25.795	25.795	2	4.7536E-10	23735	DP690-11	156.96	133.56			0.79463	0.96778	NaN	1	0	Median	6352800	3429900	2922900	12306	1837	11470	23822	57635;57636;57637;57638	57637		4	9606
SAEVETSEGVDESEKK	2	0	Acetyl (Protein N-term)	1764.7901	0.79013297	625	P30519	HMOX2	Heme oxygenase 2	yes	yes	1	0	1	10	4						1								1			13.096	13.096	2	3.8118E-18	5761	DP690-6	223.31	223.31			0.93423	0.96578	NaN	1	0	Median	7246200	3060900	4185400	12307	625	11471	23823;23824	57639;57640;57641;57642;57643	57641		5	9606
SAEYGSSLQSSR	0	1	Unmodified	1270.579	0.5789584	52	Q6KB66;CON__Q6KB66-1	KRT80	Keratin, type II cytoskeletal 80	yes	no	0	0	0	13	0													1				11.449	11.449	2	1.3914E-07	3968	DP690-13	197.79	172.22		+	0.86719	1.0639	NaN	1	0	Median	29736000	18316000	11419000	12308	52	11472	23825	57644;57645;57646;57647	57645		4	9606
SAFIGIGFTDR	0	1	Unmodified	1182.6033	0.60332266	1679	Q8NC96	NECAP1	Adaptin ear-binding coat-associated protein 1	yes	yes	0	0	0	14	0														1			18.837	18.837	2	0.026342	14063	DP690-14	70.399	43.956			0.73431	0.9037	NaN	1	0	Median	13635000	8566600	5068200	12309	1679	11473	23826	57648	57648		1	9606
SAFLQAFLGR	0	1	Unmodified	1108.6029	0.60292873	1614	Q8IXI1	RHOT2	Mitochondrial Rho GTPase 2	yes	yes	0	0	0	11.5	0.5											1	1					21.054	21.054	2	0.0023092	17123	DP690-12	134.81	89.131			0.90263	1.1196	NaN	1	0	Median	19330000	15449000	3881000	12310	1614	11474	23827;23828	57649;57650;57651;57652	57652		4	9606
SAFPHLQDAQVK	1	0	Unmodified	1339.6884	0.68844927	128	O14980	XPO1	Exportin-1	yes	yes	0	0	0	3	0			1														13.849	13.849	3	0.0077576	7117	DP690-3	84.821	55.917			0.95302	1.008	NaN	1	0	Median	35991000	17700000	18292000	12311	128	11475	23829	57653;57654	57654		2	9606
SAFSINHVSR	0	1	Unmodified	1116.5676	0.56760585	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	9	0									4								12.137	12.137	2;3	0.0033734	4789	DP690-9	104.42	37.462			1.046	1.3069	NaN	1	0	Median	11449000	5732800	5716600	12312	295	11476	23830;23831;23832;23833	57655;57656;57657;57658	57657		4	9606
SAGEEEDGPVLTDEQK	1	0	Unmodified	1702.7534	0.75335353	1459	Q66PJ3	ARL6IP4	ADP-ribosylation factor-like protein 6-interacting protein 4	yes	yes	0	0	0	11.6	3.2									3						1	1	13.255	13.255	2	9.1542E-18	6207	DP690-9	199.12	142.49			0.80379	0.94454	2.1193	2	0	Median	24038000	15402000	8635900	12313	1459	11477	23834;23835;23836;23837;23838	57659;57660;57661;57662;57663;57664;57665;57666;57667;57668	57666		10	9606
SAGELEAEVGQR	0	1	Unmodified	1244.5997	0.59969384	2552				yes	yes	0	0	0	10	4						1								1			13.05	13.05	2	0.0015659	6143	DP690-14	99.442	51.736	+		0.84551	0.95468	3.8377	2	0	Median	291960000	159690000	132270000	12314	2552	11478	23839;23840	57669;57670;57671;57672;57673;57674;57675;57676;57677	57670		9	9606
SAGLAFSLYQAMAK	1	0	Oxidation (M)	1472.7334	0.73335055	819	P50454	SERPINH1	Serpin H1	yes	yes	0	1	0	13	0													1				18.272	18.272	2	0.0021432	13143	DP690-13	96.756	82.065			0.44214	0.49033	NaN	1	0	Median	225570000	157530000	68038000	12315	819	11479	23841	57678;57679	57679	1230	2	9606
SAGLAFSLYQAMAK	1	0	Unmodified	1456.7384	0.73843593	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	9	4					1								1				20.879	20.879	2	2.548E-05	15444	DP690-5	129.88	95.156			0.90296	0.90053	NaN	1	0	Median	51372000	26553000	24819000	12316	819	11479	23842;23843	57680;57681;57682	57682		3	9606
SAGQENLETLK	1	0	Unmodified	1188.5986	0.59863121	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										1							13.112	13.112	2	0.061864	6792	DP690-10	84.817	42.422			NaN	NaN	NaN	0	0	Median	64448000	0	64448000	12317	781	11480	23844	57683	57683		1	9606
SAGQGEVLVYVEDPAGHQEEAK	1	0	Unmodified	2312.0921	0.092069069	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.25	3.22		1	1						2	3	3	1	1				16.129	16.129	2;3	1.5925000000000002E-54	11114	DP690-10	310.17	286.35			0.76728	0.88325	9.5317	9	0	Median	4817100000	2737700000	2079399999.9999998	12318	549	11481	23845;23846;23847;23848;23849;23850;23851;23852;23853;23854;23855;23856	57684;57685;57686;57687;57688;57689;57690;57691;57692;57693;57694;57695;57696;57697;57698;57699;57700;57701;57702;57703;57704;57705;57706;57707;57708;57709;57710;57711;57712;57713;57714;57715;57716;57717;57718;57719;57720;57721;57722;57723;57724	57691		41	9606
SAGSGVCVNGAVFGTGGGSR	0	1	Unmodified	1795.8271	0.82714437	2534				yes	no	0	0	0	10	4						1								1			23.814	23.814	2	0.0010274	20294	DP690-14	89.44	41.596	+	+	0.88772	1.0091	7.3724	2	0	Median	357680000	189510000	168170000	12319	2534	11482	23857;23858	57725;57726;57727	57726		3	9606
SAGVQCFGPTAEAAQLESSK	1	0	Unmodified	2036.9473	0.94731909	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														16.961	16.961	2	5.5782E-65	11202	DP690-3	275.83	222.8			NaN	NaN	NaN	0	0	Median	10950000	10950000	0	12320	559	11483	23859	57728;57729	57729		2	9606
SAGVQCFGPTAEAAQLESSKR	1	1	Unmodified	2193.0484	0.048430116	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	4	1			1		1												15.514	15.514	3	4.1233E-15	9446	DP690-3	162.81	143.98			0.98746	1.0767	1.987	2	0	Median	126950000	62607000	64344000	12321	559	11484	23860;23861	57730;57731;57732;57733;57734	57733		5	9606
SAHATAPVNIAGSR	0	1	Unmodified	1350.7004	0.70041094	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	9	0									2								10.803	10.803	3	0.0010468	3153	DP690-9	102.9	76.192			NaN	NaN	NaN	0	0	Median	16827000	16827000	0	12322	2422	11485	23862;23863	57735;57736;57737	57735		3	9606
SAIDLEEMASGLNK	1	0	Oxidation (M)	1492.7079	0.70792366	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	1	0	13	0													1				16.376	16.376	2	4.9582E-05	10541	DP690-13	141.71	103.99			0.73721	0.85503	NaN	1	0	Median	38033000	20565000	17467000	12323	934	11486	23864	57738;57739	57738	1452	2	9606
SAIDLEEMASGLNKR	1	1	Unmodified	1632.8141	0.81412007	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	1	13	0													1				17.907	17.907	3	0.0068394	12734	DP690-13	64.842	38.113			0.8582	1.0644	NaN	1	0	Median	21569000	13501000	8067500	12324	934	11487	23865	57740	57740		1	9606
SAILQENSTLSASNK	1	0	Unmodified	1561.7948	0.79476484	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	0	12	0												1					13.955	13.955	2	1.1796E-05	7512	DP690-12	187.78	147.84			0.844	0.96129	NaN	1	0	Median	145350000	74716000	70633000	12325	2521	11488	23866	57741;57742;57743;57744	57743		4	9606
SAINEVVTR	0	1	Unmodified	987.53491	0.53490874	1003	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	14	3.46								1								3	12.981	12.981	2	0.00032244	5783	DP690-8	158.87	84.573			0.91783	1.0086	NaN	1	0	Median	223930000	13287000	210640000	12326	1003	11489	23867;23868;23869;23870	57745;57746;57747;57748;57749;57750;57751;57752	57751		8	9606
SAIPAEESDQLLIRPLGAGQEVGR	0	2	Acetyl (Protein N-term)	2547.3293	0.32927965	2370	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	1	0	1	11	0											1						20.564	20.564	2	2.2443E-12	17315	DP690-11	156.72	100.74			NaN	NaN	NaN	0	0	Median	19671000	0	19671000	12327	2370	11490	23871	57753;57754	57753		2	9606
SAKPTKPAASDLPVPAEGVR	2	1	Unmodified	1990.0847	0.084739267	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	2	12	1.22											2	1		1			12.704	12.704	3;4	9.5024E-07	5992	DP690-11	135.98	114.55			0.60722	0.73455	14.467	4	0	Median	627820000	393170000	234660000	12328	1119	11491	23872;23873;23874;23875	57755;57756;57757;57758;57759;57760;57761;57762	57757		8	9606
SALALVTGAGSGIGR	0	1	Unmodified	1328.7412	0.74121312	1770	Q92506	HSD17B8	Estradiol 17-beta-dehydrogenase 8	yes	yes	0	0	0	15	0															1		17.713	17.713	2	0.0023372	12292	DP690-15	129.74	74.175			NaN	NaN	NaN	0	0	Median	5241600	0	5241600	12329	1770	11492	23876	57763;57764	57763		2	9606
SALASVIMGLSPILGK	1	0	Oxidation (M)	1571.8957	0.89566486	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	1	0	9.33	3.77				1								2					23.203	23.203	2	0.00032701	18055	DP690-4	117.2	99.833			1.778	1.9043	NaN	1	0	Median	13498000	6995500	6502600	12330	624	11493	23877;23878;23879	57765;57766;57767;57768;57769;57770;57771;57772;57773;57774;57775;57776	57775	860	12	9606
SALDEIMEIEEEK	1	0	Oxidation (M)	1550.7022	0.70216958	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	1	0	13	0													1				19.767	19.767	2	0.00020231	15057	DP690-13	146.71	124.18			0.752	0.87449	NaN	1	0	Median	24553000	13551000	11003000	12331	229	11494	23880	57777;57778;57779	57778	230	3	9606
SALDEIMEIEEEK	1	0	Unmodified	1534.7073	0.70725496	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	13	0													1				21.395	21.395	2	0.0044227	17275	DP690-13	85.924	56.861			0.74415	0.84538	NaN	1	0	Median	8378600	6409700	1968900	12332	229	11494	23881	57780	57780		1	9606
SALDEIMEIEEEKKR	2	1	Oxidation (M)	1834.8982	0.89824363	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	1	2	13	0													1				16.208	16.208	3	0.00021742	10306	DP690-13	106.55	88.683			0.9128	1.0078	NaN	1	0	Median	71439000	41191000	30248000	12333	229	11495	23882	57781;57782;57783	57781	230	3	9606
SALDEIMEIEEEKKR	2	1	Unmodified	1818.9033	0.90332901	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	2	13	0													1				17.592	17.592	3	1.2924E-05	12256	DP690-13	158.52	128.83			1.1315	1.2493	NaN	1	0	Median	75054000	32340000	42713000	12334	229	11495	23883	57784	57784		1	9606
SALGPGVPHIINTK	1	0	Unmodified	1402.7932	0.79324869	2074	Q9GZS1	POLR1E	DNA-directed RNA polymerase I subunit RPA49	yes	yes	0	0	0	13	0													1				14.835	14.835	3	0.0010222	8472	DP690-13	88.282	70.079			0.77231	0.89211	NaN	1	0	Median	67743000	38815000	28929000	12335	2074	11496	23884	57785;57786;57787;57788	57785		4	9606
SALIPPVEETVFYPSPYPIR	0	1	Unmodified	2274.1936	0.19362101	2108	Q9H300	PARL	Presenilins-associated rhomboid-like protein, mitochondrial;P-beta	yes	yes	0	0	0	9.5	0.5									1	1							21.887	21.887	2	0.0036571	19411	DP690-10	73.834	47.081			0.87052	1.0913	NaN	1	0	Median	14909000	9458400	5450200	12336	2108	11497	23885;23886	57789;57790;57791;57792;57793	57791		5	9606
SALLALGLK	1	0	Unmodified	884.5695	0.56950333	1166	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	12	0												1					18.198	18.198	2	0.022167	13407	DP690-12	77.282	35.78			0.83667	0.9813	NaN	1	0	Median	92465000	50912000	41553000	12337	1166	11498	23887	57794;57795;57796;57797	57794		4	9606
SALLDFYMK	1	0	Unmodified	1086.542	0.54196796	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							19.759	19.759	2	0.019566	16419	DP690-10	79.906	52.859			0.87486	1.0724	NaN	1	0	Median	30753000	16309000	14444000	12338	1782	11499	23888	57798;57799	57798		2	9606
SALQSINEWAAQTTDGKLPEVTK	2	0	Unmodified	2486.2653	0.26528241	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	1	5	0					1												19.736	19.736	3	4.214E-17	13989	DP690-5	178.73	152.27			0.76286	0.74421	NaN	1	0	Median	85889000	44314000	41575000	12339	819	11500	23889	57800;57801;57802;57803;57804	57802		5	9606
SALQVLVSILK	1	0	Unmodified	1169.7384	0.73835958	731	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	10	0										1							23.986	23.986	2	0.0092314	21897	DP690-10	79.986	65.867			0.58487	0.67671	NaN	1	0	Median	1636900	841350	795530	12340	731	11501	23890	57805;57806	57806		2	9606
SALSGHLETVILGLLK	1	0	Unmodified	1649.9716	0.97160699	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	11.9	3.54	2				1	2	1		2	7	1			26	3		25.591	25.591	2;3	1.4376E-27	19312	DP690-14	290.28	276.61			0.87941	1.021	11.664	28	0	Median	6064499999.999999	3219799999.9999995	2844700000	12341	404	11502	23891;23892;23893;23894;23895;23896;23897;23898;23899;23900;23901;23902;23903;23904;23905;23906;23907;23908;23909;23910;23911;23912;23913;23914;23915;23916;23917;23918;23919;23920;23921;23922;23923;23924;23925;23926;23927;23928;23929;23930;23931;23932;23933;23934;23935	57807;57808;57809;57810;57811;57812;57813;57814;57815;57816;57817;57818;57819;57820;57821;57822;57823;57824;57825;57826;57827;57828;57829;57830;57831;57832;57833;57834;57835;57836;57837;57838;57839;57840;57841;57842;57843;57844;57845;57846;57847;57848;57849;57850;57851;57852;57853;57854;57855;57856;57857;57858;57859;57860;57861;57862;57863;57864;57865;57866;57867;57868;57869;57870;57871;57872;57873;57874;57875;57876;57877;57878;57879;57880;57881;57882;57883;57884;57885;57886;57887;57888;57889;57890;57891;57892;57893;57894;57895;57896;57897;57898;57899;57900;57901;57902;57903;57904;57905;57906;57907;57908;57909;57910;57911;57912;57913;57914;57915;57916;57917;57918	57833		111	9606
SAMPEGYVQER	0	1	Oxidation (M)	1281.566	0.56595087	57	CON__Q9U6Y5			yes	yes	0	1	0	6.47	2.45	1	2	2	1	23	8	27	6	1	1			1	1	1	1	21.725	21.725	2	1.5277E-08	28749	DP690-7	175.93	128.36		+	4.3289	4.3714	223.35	20	0	Median	164930000000	108820000000	56113000000	12342	57	11503	23936;23937;23938;23939;23940;23941;23942;23943;23944;23945;23946;23947;23948;23949;23950;23951;23952;23953;23954;23955;23956;23957;23958;23959;23960;23961;23962;23963;23964;23965;23966;23967;23968;23969;23970;23971;23972;23973;23974;23975;23976;23977;23978;23979;23980;23981;23982;23983;23984;23985;23986;23987;23988;23989;23990;23991;23992;23993;23994;23995;23996;23997;23998;23999;24000;24001;24002;24003;24004;24005;24006;24007;24008;24009;24010;24011	57919;57920;57921;57922;57923;57924;57925;57926;57927;57928;57929;57930;57931;57932;57933;57934;57935;57936;57937;57938;57939;57940;57941;57942;57943;57944;57945;57946;57947;57948;57949;57950;57951;57952;57953;57954;57955;57956;57957;57958;57959;57960;57961;57962;57963;57964;57965;57966;57967;57968;57969;57970;57971;57972;57973;57974;57975;57976;57977;57978;57979;57980;57981;57982;57983;57984;57985;57986;57987;57988;57989;57990;57991;57992;57993;57994;57995;57996;57997;57998;57999;58000;58001;58002;58003;58004;58005;58006;58007;58008;58009;58010;58011;58012;58013;58014;58015;58016;58017;58018;58019;58020;58021;58022;58023;58024;58025;58026;58027;58028;58029;58030;58031;58032;58033;58034;58035;58036;58037;58038;58039;58040;58041;58042;58043;58044;58045;58046;58047;58048;58049;58050;58051;58052;58053;58054;58055;58056;58057;58058;58059;58060;58061;58062;58063;58064;58065;58066;58067;58068;58069;58070;58071;58072;58073;58074;58075;58076;58077;58078;58079;58080;58081;58082;58083;58084;58085;58086	58061	62	168	
SAMPEGYVQER	0	1	Unmodified	1265.571	0.57103625	57	CON__Q9U6Y5			yes	yes	0	0	0	6.03	2.61	1	1	1	3	9	3	8	1	1				1	1			16.322	16.322	2	1.7954E-10	6290	DP690-7	179.1	100.95		+	4.6152	4.8758	126.18	9	0	Median	75936000000	40223000000	35712000000	12343	57	11503	24012;24013;24014;24015;24016;24017;24018;24019;24020;24021;24022;24023;24024;24025;24026;24027;24028;24029;24030;24031;24032;24033;24034;24035;24036;24037;24038;24039;24040;24041	58087;58088;58089;58090;58091;58092;58093;58094;58095;58096;58097;58098;58099;58100;58101;58102;58103;58104;58105;58106;58107;58108;58109;58110;58111;58112;58113;58114;58115;58116;58117;58118;58119;58120;58121;58122;58123;58124;58125;58126;58127;58128;58129;58130;58131;58132;58133;58134;58135;58136;58137;58138;58139;58140;58141;58142;58143;58144;58145;58146;58147;58148;58149;58150;58151;58152;58153;58154;58155;58156;58157;58158;58159;58160;58161;58162;58163;58164;58165;58166	58139		80	
SAMPIEVMMNETAQQNMENHPVIR	0	1	4 Oxidation (M)	2833.2503	0.2503191	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	4	0	13	0													1				13.296	13.296	3	0.00032765	6334	DP690-13	113.71	104.82			0.64373	0.78478	NaN	1	0	Median	41859000	23187000	18672000	12344	1114	11504	24042	58167;58168;58169;58170;58171	58168	1728;1729;1730;1731	5	9606
SAMPIEVMMNETAQQNMENHPVIR	0	1	3 Oxidation (M)	2817.2554	0.25540448	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	3	0	13	0													3				14.727	14.727	3	8.9307E-06	7998	DP690-13	112.36	87.487			0.76816	0.94488	44.093	2	0	Median	50026000	27950000	22077000	12345	1114	11504	24043;24044;24045	58172;58173;58174;58175;58176;58177;58178;58179;58180	58180	1728;1729;1730;1731	9	9606
SANLVAATLGAILNR	0	1	Unmodified	1482.8518	0.85182621	535	P19367	HK1	Hexokinase-1	yes	yes	0	0	0	11	0											1						24.249	24.249	2	6.2413E-05	22045	DP690-11	155.47	102.46			NaN	NaN	NaN	0	0	Median	6017400	6017400	0	12346	535	11505	24046	58181;58182	58182		2	9606
SANPAMQLDR	0	1	Oxidation (M)	1117.5186	0.51860675	2325	Q9UBV8	PEF1	Peflin	yes	yes	0	1	0	7	0							1										11.329	11.329	2	0.047522	3933	DP690-7	71.349	45.79			0.67608	0.7763	NaN	1	0	Median	18029000	9216600	8812500	12347	2325	11506	24047	58183	58183		1	9606
SANPAMQLDR	0	1	Unmodified	1101.5237	0.52369213	2325	Q9UBV8	PEF1	Peflin	yes	yes	0	0	0	7	0							1										12.966	12.966	2	0.0091751	5806	DP690-7	84.817	48.057			0.76265	0.84699	NaN	1	0	Median	44428000	24887000	19541000	12348	2325	11506	24048	58184;58185;58186;58187	58187		4	9606
SANVNEFPVLK	1	0	Unmodified	1216.6452	0.64518747	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														16.491	16.491	2	0.00065588	10633	DP690-3	109.66	86.519			1.0433	1.1025	NaN	1	0	Median	37147000	16655000	20492000	12349	892	11507	24049	58188;58189;58190;58191	58190		4	9606
SAPAGSSHPAASAR	0	1	Acetyl (Protein N-term)	1307.6218	0.62182627	328	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	1	0	0	6.5	3.5			1							1							10.282	10.282	2	8.8919E-05	2477	DP690-3	139.76	105.84			0.71002	0.81853	NaN	1	0	Median	20376000	11877000	8498500	12350	328	11508	24050;24051	58192;58193;58194;58195	58193		4	9606
SAPAMQSSGSFNYAR	0	1	Oxidation (M)	1588.694	0.69400493	1758	Q8WX93	PALLD	Palladin	yes	yes	0	1	0	9.5	3.15			1						1	1	2		1				12.728	12.728	2	2.2099E-05	5536	DP690-3	130.44	95.633			0.76537	0.89097	13.066	4	0	Median	212230000	130980000	81249000	12351	1758	11509	24052;24053;24054;24055;24056;24057	58196;58197;58198;58199;58200;58201;58202;58203;58204;58205;58206;58207;58208;58209;58210;58211;58212	58210	2330	17	9606
SAPAMQSSGSFNYAR	0	1	Unmodified	1572.6991	0.69909031	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	12	1											1		1				14.217	14.217	2	4.541E-12	8205	DP690-11	213.35	186.67			0.76108	0.90325	NaN	1	0	Median	132840000	75599000	57241000	12352	1758	11509	24058;24059	58213;58214;58215	58214		3	9606
SAPAMQSSGSFNYARPK	1	1	Unmodified	1797.8468	0.84681718	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	10.7	0.471										1	2						13.048	13.048	2;3	1.1643E-07	6531	DP690-11	145.7	124.99			0.80016	0.95124	26.749	2	0	Median	217890000	127170000	90721000	12353	1758	11510	24060;24061;24062	58216;58217;58218;58219;58220	58218		5	9606
SAPAMQSSGSFNYARPK	1	1	Oxidation (M)	1813.8417	0.8417318	1758	Q8WX93	PALLD	Palladin	yes	yes	0	1	1	9	3.1			1						1		3						11.868	11.868	2;3	3.1046E-07	4430	DP690-11	142.95	119.35			0.73275	0.83106	14.697	4	0	Median	229260000	133450000	95804000	12354	1758	11510	24063;24064;24065;24066;24067	58221;58222;58223;58224;58225;58226;58227;58228;58229;58230	58224	2330	8	9606
SAPCGSLAFSGDR	0	1	Unmodified	1323.5877	0.58774895	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								14.176	14.176	2	0.00031452	7394	DP690-9	113.67	73.612			0.84753	1.0574	NaN	1	0	Median	16783000	8986600	7796000	12355	1048	11511	24068	58231;58232	58231		2	9606
SAPFFIPTIPGLVPR	0	1	Unmodified	1610.9184	0.91844921	1707	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	10.5	0.5										1	1						23.39	23.39	2	0.029284	21031	DP690-11	96.756	38.971			NaN	NaN	NaN	0	0	Median	4952000	4952000	0	12356	1707	11512	24069;24070	58233;58234	58234		2	9606
SAPIQTQPEARPEAELPK	1	1	Unmodified	1961.0218	0.02180466	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	1	10	0										1							13.484	13.484	3	0.071642	7359	DP690-10	59.15	44.678			0.67094	0.85319	NaN	1	0	Median	59056000	33958000	25099000	12357	1602	11513	24071	58235	58235		1	9606
SAPTAPTPPPPPPPATPR	0	1	Unmodified	1747.9257	0.92571943	1262	Q14202	ZMYM3	Zinc finger MYM-type protein 3	yes	yes	0	0	0	10	0										1							13.527	13.527	2	0.010354	7374	DP690-10	100.73	64.056			NaN	NaN	NaN	0	0	Median	15804000	15804000	0	12358	1262	11514	24072	58236	58236		1	9606
SAPWNSFLPPPPPMPGPR	0	1	Unmodified	1943.9716	0.97162377	1364	Q16637	SMN1	Survival motor neuron protein	yes	yes	0	0	0	14	0														1			21.226	21.226	2	0.010816	17213	DP690-14	67.997	35.519			0.94554	1.1586	NaN	1	0	Median	15604000	7751700	7852400	12359	1364	11515	24073	58237	58237		1	9606
SAQAQMRALLDQLMGTAR	0	2	Acetyl (Protein N-term);Oxidation (M)	2018.0037	0.0037285295	2185	Q9NQ29	LUC7L	Putative RNA-binding protein Luc7-like 1	yes	yes	1	1	1	5	0					1												24.245	24.245	2	0.048418	19511	DP690-5	59.116	18.389			NaN	NaN	NaN	0	0	Median	0	0	0	12360	2185	11516	24074	58238	58238		1	9606
SAQIADLQQK	1	0	Unmodified	1100.5826	0.58258722	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	0	10	0										1							12.365	12.365	2	0.0013167	5674	DP690-10	106.68	82.915			0.72114	0.84913	NaN	1	0	Median	281490000	168220000	113280000	12361	311	11517	24075	58239;58240;58241	58240		3	9606
SASAPAAEGEGTPTQPASEK	1	0	Acetyl (Protein N-term)	1926.8807	0.88067931	674	P35659	DEK	Protein DEK	yes	yes	1	0	0	13	0													1				13.247	13.247	2	1.3533E-29	6295	DP690-13	222.56	176.91			NaN	NaN	NaN	0	0	Median	10040000	0	10040000	12362	674	11518	24076	58242;58243	58242		2	9606
SASAPAAEGEGTPTQPASEKEPEMPGPR	1	1	Acetyl (Protein N-term);Oxidation (M)	2836.2821	0.28213104	674	P35659	DEK	Protein DEK	yes	yes	1	1	1	13	0													1				13.276	13.276	2	1.2814E-05	6357	DP690-13	117.53	107.78			0.57089	0.70736	NaN	1	0	Median	24093000	16695000	7398500	12363	674	11519	24077	58244;58245	58244	979	2	9606
SASLSSAATTGLTTQQR	0	1	Unmodified	1678.8486	0.84859132	2193	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	2	0		1															14.28	14.28	2	2.1307E-12	6842	DP690-2	196.7	141.61			1.1011	1.1258	NaN	1	0	Median	3296800	1571000	1725800	12364	2193	11520	24078	58246;58247	58247		2	9606
SASNTAAEFGEPLPK	1	0	Unmodified	1517.7362	0.73618733	248	O75362	ZNF217	Zinc finger protein 217	yes	yes	0	0	0	13	0													1				17.24	17.24	2	0.0023847	11762	DP690-13	88.134	39.532			0.61462	0.6855	NaN	1	0	Median	194690000	122430000	72254000	12365	248	11521	24079	58248;58249	58249		2	9606
SASSLLEQRPK	1	1	Acetyl (Protein N-term)	1256.6725	0.67246486	2497	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	1	0	1	8	4				1								1					15.234	15.234	2	0.0097717	8885	DP690-4	112.36	46.892			0.72721	0.82336	19.42	2	0	Median	178420000	95393000	83022000	12366	2497	11522	24080;24081	58250;58251	58251		0	9606
SATDKQQELLVSLATVIFVASQK	2	0	Unmodified	2475.3585	0.35845451	2233	Q9NVH2	INTS7	Integrator complex subunit 7	yes	yes	0	0	1	11	0											1						25.4	25.4	3	0.011726	23443	DP690-11	53.747	44.181			0.90008	1.042	NaN	1	0	Median	3112100	1646900	1465200	12367	2233	11523	24082	58252	58252		1	9606
SATIVADLSETTIQTPDGEER	0	1	Unmodified	2232.0758	0.075750303	2199	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	12	0												1					18.907	18.907	2	2.3686000000000002E-29	14457	DP690-12	226.24	189.94			0.50763	0.61792	NaN	1	0	Median	11269000	6904900	4364200	12368	2199	11524	24083	58253;58254	58253		2	9606
SATVKPGAVGAGEFVSPCESGDNTGEPSALEEQR	1	1	Unmodified	3432.574	0.57395596	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	1	10	0										1							16.146	16.146	3	3.0191E-22	11164	DP690-10	174.97	163.72			0.45854	0.58073	NaN	1	0	Median	53832000	35888000	17944000	12369	1167	11525	24084	58255;58256;58257;58258	58255		4	9606
SAVADKHELLSLASSNHLGK	2	0	Unmodified	2076.0964	0.096366586	155	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	1	14	0														1			14.458	14.458	4	2.7157E-05	8124	DP690-14	118.05	118.05			1.0036	1.1199	NaN	1	0	Median	199220000	96233000	102980000	12370	155	11526	24085	58259;58260	58259		2	9606
SAVDYNTCAGVWSQDK	1	0	Unmodified	1799.7785	0.77846285	2497	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	12	0												1					15.947	15.947	2	0.00056154	10350	DP690-12	104.59	91.165			1.152	1.385	NaN	1	0	Median	19321000	7639900	11681000	12371	2497	11527	24086	58261;58262	58261		2	9606
SAVEAQNEVTENPK	1	0	Unmodified	1514.7213	0.72126554	1384	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	3	0			1														11.394	11.394	2	4.6602E-05	3820	DP690-3	155.33	155.33			0.94256	0.99072	NaN	1	0	Median	7139900	3929300	3210600	12372	1384	11528	24087	58263;58264	58263		2	9606
SAVEQLCLAESTRPR	0	2	Unmodified	1715.8625	0.86246725	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	1	10	0										1							14.52	14.52	3	0.011329	8852	DP690-10	94.688	54.809			NaN	NaN	NaN	0	0	Median	65391000	0	65391000	12373	2155	11529	24088	58265	58265		1	9606
SAVGFDYQGK	1	0	Unmodified	1070.5033	0.50327426	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	9.5	3.2				1							2	1					14.004	14.004	2	0.013843	8042	DP690-11	109.48	74.326			1.0819	1.2269	7.3343	2	0	Median	101040000	47755000	53281000	12374	1267	11530	24089;24090;24091;24092	58266;58267;58268;58269	58267		4	9606
SAVGFEYQGK	1	0	Unmodified	1084.5189	0.51892433	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	11.2	0.4											4	1					13.798	13.798	2	0.0085223	7680	DP690-11	85.731	71.064			0.96435	1.0868	7.7577	2	0	Median	632230000	332260000	299970000	12375	1267	11531	24093;24094;24095;24096;24097	58270;58271;58272;58273;58274;58275	58271		6	9606
SAVQKPPSTGSAPAIESVD	1	0	Unmodified	1839.9214	0.92142191	2222	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	1	12	0												1					14.303	14.303	2	1.6118E-05	8037	DP690-12	127.78	87.05			1.0037	1.197	NaN	1	0	Median	38383000	20231000	18152000	12376	2222	11532	24098	58276;58277;58278;58279	58278		4	9606
SAVRPASLNLNR	0	2	Unmodified	1296.7262	0.72623176	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	1	9.5	0.5									1	1							12.235	12.235	3	0.0017085	5487	DP690-10	82.774	68.691			0.64167	0.72909	15.4	2	0	Median	158610000	95666000	62941000	12377	1901	11533	24099;24100	58280;58281	58280		2	9606
SAWYMGPVSR	0	1	Oxidation (M)	1168.5335	0.53352853	753	P46109	CRKL	Crk-like protein	yes	yes	0	1	0	6	0						2											16.123	16.123	2	0.018213	10583	DP690-6	82.287	53.117			0.79057	0.86043	9.2465	2	0	Median	207770000	117080000	90693000	12378	753	11534	24101;24102	58282;58283;58284;58285	58284	1115	4	9606
SAWYMGPVSR	0	1	Unmodified	1152.5386	0.53861391	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	6	0						1											17.091	17.091	2	9.3992E-05	10654	DP690-6	148.52	106.65			0.76513	0.81472	NaN	1	0	Median	118040000	66548000	51491000	12379	753	11534	24103	58286;58287	58286		2	9606
SAYDSTMETMNYAQIR	0	1	Unmodified	1879.808	0.80804841	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	11	0											1						17.933	17.933	2	0.017642	13588	DP690-11	96.067	74.396			NaN	NaN	NaN	0	0	Median	10783000	10783000	0	12380	873	11535	24104	58288	58288		1	9606
SAYDSTMETMNYAQIR	0	1	2 Oxidation (M)	1911.7979	0.79787766	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	2	0	3	0			1														14.637	14.637	2	9.6734E-07	8151	DP690-3	146.16	136.97			1.0969	1.2591	NaN	1	0	Median	16110000	9524800	6585400	12381	873	11535	24105	58289;58290;58291;58292	58290	1323;1324	4	9606
SAYDSTMETMNYAQIR	0	1	Oxidation (M)	1895.803	0.80296304	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	1	0	3	0			1														15.985	15.985	2	0.054382	9972	DP690-3	86.772	64.899			NaN	NaN	NaN	0	0	Median	0	0	0	12382	873	11535	24106	58293	58293	1323;1324	1	9606
SAYLSCLQR	0	1	Unmodified	1096.5335	0.53352853	1828	Q96BQ5	CCDC127	Coiled-coil domain-containing protein 127	yes	yes	0	0	0	15	0															1		14.654	14.654	2	0.0021421	8290	DP690-15	113.41	44.214			1.0914	1.2637	NaN	1	0	Median	15570000	7666300	7903600	12383	1828	11536	24107	58294	58294		1	9606
SAYNVYVAER	0	1	Unmodified	1170.5669	0.56693715	1069	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	0	15	0															1		14.233	14.233	2	0.02658	7673	DP690-15	95.775	52.124			NaN	NaN	NaN	0	0	Median	307280000	0	307280000	12384	1069	11537	24108	58295;58296	58296		2	9606
SAYQEAMDISKK	2	0	Oxidation (M)	1385.6497	0.6496805	641	P31947	SFN	14-3-3 protein sigma	yes	yes	0	1	1	7	0							2										12.251	12.251	2;3	0.0077668	4952	DP690-7	87.713	74.594			1.2253	1.31	0.28706	2	0	Median	31583000	15565000	16018000	12385	641	11538	24109;24110	58297;58298;58299	58299	895	3	9606
SAYQEAMDISKK	2	0	Unmodified	1369.6548	0.65476588	641	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	1	7	0							1										13.647	13.647	3	0.05833	6690	DP690-7	41.825	25.799			1.5023	1.6062	NaN	1	0	Median	28067000	9393500	18673000	12386	641	11538	24111	58300	58300		1	9606
SCAEWVSLSK	1	0	Unmodified	1165.5438	0.54375887	282	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	15	0															1		15.837	15.837	2	0.00026028	9925	DP690-15	125.57	90.131			0.76489	0.90243	NaN	1	0	Median	30162000	18721000	11442000	12387	282	11539	24112	58301;58302	58302		2	9606
SCDFLSSFR	0	1	Unmodified	1117.4862	0.48624399	661	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	6	0						1											18.584	18.584	2	0.00045949	12417	DP690-6	152.63	105.55			0.78426	0.89629	NaN	1	0	Median	13877000	8586900	5290200	12388	661	11540	24113	58303;58304;58305	58303		3	9606
SCDPGLEDPCGLNR	0	1	Unmodified	1588.661	0.66099025	2158	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	3	0			1														14.704	14.704	2	0.023651	8272	DP690-3	96.756	65.866			NaN	NaN	NaN	0	0	Median	0	0	0	12389	2158	11541	24114	58306	58306		1	9606
SCEGQNPELLPK	1	0	Unmodified	1370.65	0.65001485	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.5	0.5										1	1						13.726	13.726	2	8.3067E-05	7573	DP690-10	125.68	95.364			0.74464	0.89534	2.7656	2	0	Median	313170000	168600000	144570000	12390	2190	11542	24115;24116	58307;58308;58309;58310;58311;58312;58313	58309		7	9606
SCENLAPFNTALK	1	0	Unmodified	1463.7079	0.70786408	1187	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	6	0						1											17.003	17.003	2	0.052551	10562	DP690-6	70.488	54.859			0.65179	0.73958	NaN	1	0	Median	6446300	3326500	3119800	12391	1187	11543	24117	58314	58314		1	9606
SCFLCMVCK	1	0	Oxidation (M)	1219.4858	0.48579176	548	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	1	0	15	0															1		15.091	15.091	2	0.037127	8916	DP690-15	77.058	67.7			0.97541	1.1259	NaN	1	0	Median	51487000	26071000	25416000	12392	548	11544	24118	58315	58315	701	1	9606
SCGLHVTSIK	1	0	Unmodified	1100.5648	0.56482866	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	4	0				1													11.254	11.254	2	0.00064833	3762	DP690-4	114.4	20.973			0.95612	1.0406	NaN	1	0	Median	21781000	11511000	10270000	12393	516	11545	24119	58316;58317	58317		2	9606
SCGPASQSTLGLK	1	0	Unmodified	1304.6395	0.63945017	2041	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	12	0												1					13.241	13.241	2	0.008124	6574	DP690-12	75.819	57.039			0.66996	0.80541	NaN	1	0	Median	19946000	12157000	7788200	12394	2041	11546	24120	58318;58319	58319		2	9606
SCGSSTPDEFPTDIPGTK	1	0	Unmodified	1894.8255	0.82547262	714	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	yes	yes	0	0	0	13	0													1				16.698	16.698	2	3.4124E-06	11115	DP690-13	132.51	121.06			0.77427	0.90125	NaN	1	0	Median	27203000	16620000	10584000	12395	714	11547	24121	58320;58321;58322;58323;58324	58321		5	9606
SCINLPTVLPGSPSK	1	0	Acetyl (Protein N-term)	1610.8338	0.83379288	367	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	1	0	0	15	0															1		21.201	21.201	2	0.00083341	16464	DP690-15	105.95	75.222			0.65165	0.7454	NaN	1	0	Median	2724300	1485100	1239300	12396	367	11548	24122	58325;58326;58327	58325		3	9606
SCISCLNSNAMPR	0	1	Oxidation (M)	1524.6483	0.64831707	1592	Q86Y79	PTRH1	Probable peptidyl-tRNA hydrolase	yes	yes	0	1	0	15	0															1		12.931	12.931	2	0.00087977	5958	DP690-15	108.47	94.352			0.84112	0.97283	NaN	1	0	Median	13757000	7159700	6597100	12397	1592	11549	24123	58328;58329	58328	2252	2	9606
SCLLHQFTEK	1	0	Unmodified	1261.6125	0.61250714	939	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	15	0															2		13.918	13.918	2;3	5.4085E-05	7380	DP690-15	169.76	95.46			0.93424	1.0571	22.78	2	0	Median	170960000	83880000	87076000	12398	939	11550	24124;24125	58330;58331;58332;58333;58334;58335	58333		6	9606
SCLLHQFTEKK	2	0	Unmodified	1389.7075	0.70747015	939	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	1	15	0															1		12.155	12.155	3	0.01213	4904	DP690-15	87.568	72.23			0.85322	0.97674	NaN	1	0	Median	27082000	15115000	11967000	12399	939	11551	24126	58336;58337	58336		2	9606
SCPSEVLVCTTSPDRPGPPTRPLVK	1	2	Unmodified	2749.3891	0.38911949	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	2	10	0										1							14.602	14.602	4	0.021303	9030	DP690-10	53.779	38.971			0.56708	0.64526	NaN	1	0	Median	149860000	109660000	40199000	12400	1399	11552	24127	58338;58339	58339		2	9606
SCSGVEFSTSGHAYTDTGK	1	0	Unmodified	1989.8374	0.83743429	2433	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	14.4	0.49														3	2		13.209	13.209	2;3	1.7911E-51	6484	DP690-14	283.45	243.07			0.82564	0.93002	23.195	4	0	Median	458430000	250750000	207680000	12401	2433	11553	24128;24129;24130;24131;24132	58340;58341;58342;58343;58344;58345;58346;58347;58348;58349;58350;58351;58352;58353	58347		14	9606
SCSGVEFSTSGSSNTDTGK	1	0	Unmodified	1906.7851	0.78506437	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	11.8	4.18						2								2	1	1	12.899	12.899	2	6.386100000000001E-115	6230	DP690-14	341.59	300.2			0.86009	0.97394	5.0037	4	0	Median	769160000	426580000	342580000	12402	744	11554	24133;24134;24135;24136;24137;24138	58354;58355;58356;58357;58358;58359;58360;58361;58362;58363;58364;58365;58366;58367;58368;58369;58370;58371;58372	58359		19	9606
SCSGVEFSTSGSSNTDTGKVTGTLETK	2	0	Unmodified	2736.2396	0.23959752	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	1	14	0														1			14.693	14.693	3	2.3043000000000002E-55	8421	DP690-14	253.66	240.6			0.6744	0.75463	NaN	1	0	Median	83212000	49174000	34038000	12403	744	11555	24139	58373;58374;58375;58376;58377	58373		5	9606
SCSLVLEHQPDNIK	1	0	Unmodified	1638.8036	0.80355538	1271	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	13	0													1				13.541	13.541	2	8.3755E-05	6688	DP690-13	160.86	122.45			1.221	1.4093	NaN	1	0	Median	15053000	7044500	8008600	12404	1271	11556	24140	58378;58379	58378		2	9606
SCTQSATAPQQEADAEVNTETLNK	1	0	Unmodified	2592.161	0.16095327	2394	Q9ULU4	ZMYND8	Protein kinase C-binding protein 1	yes	yes	0	0	0	10	0										1							14.567	14.567	2	0.0034794	8879	DP690-10	93.738	62.212			NaN	NaN	NaN	0	0	Median	0	0	0	12405	2394	11557	24141	58380	58380		1	9606
SCVEEPEPEPEAAEGDGDK	1	0	Unmodified	2043.8215	0.82150945	844	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	6	0						1											13.209	13.209	2	0.00018605	5951	DP690-6	153.32	125.09			NaN	NaN	NaN	0	0	Median	0	0	0	12406	844	11558	24142	58381	58381		1	9606
SCVEEPEPEPEAAEGDGDKK	2	0	Unmodified	2171.9165	0.91647247	844	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	1	6	0						1											11.87	11.87	3	3.4321E-07	4561	DP690-6	138.97	93.13			0.59182	0.6118	NaN	1	0	Median	26901000	17005000	9895300	12407	844	11559	24143	58382;58383;58384;58385;58386;58387	58386		6	9606
SCVSVEWAEGGATK	1	0	Unmodified	1479.6664	0.6663932	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11	0											1						15.588	15.588	2	1.1978E-05	10258	DP690-11	177.44	154.29			0.92004	1.0497	NaN	1	0	Median	184360000	97571000	86786000	12408	1950	11560	24144	58388;58389;58390;58391	58390		4	9606
SCYDLSCHAR	0	1	Unmodified	1267.5074	0.50739014	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3.33	0.471			2	1													10.939	10.939	2;3	7.9971E-05	3341	DP690-3	126.31	115.41			0.984	1.1439	13.893	3	0	Median	120840000	62915000	57924000	12409	720	11561	24145;24146;24147	58392;58393;58394;58395;58396;58397;58398;58399	58395		8	9606
SCYLSSLDLLLEHR	0	1	Unmodified	1704.8505	0.85050558	1973	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	yes	yes	0	0	0	7	0							1										20.517	20.517	3	0.00079293	15290	DP690-7	90.444	66.019			0.79203	0.90281	NaN	1	0	Median	4785100	3162000	1623100	12410	1973	11562	24148	58400;58401	58401		2	9606
SDAEPEPGNLSEK	1	0	Unmodified	1371.6154	0.61540349	1855	Q96FS4	SIPA1	Signal-induced proliferation-associated protein 1	yes	yes	0	0	0	11	0											1						12.187	12.187	2	0.0082983	5247	DP690-11	109.83	66.388			NaN	NaN	NaN	0	0	Median	0	0	0	12411	1855	11563	24149	58402	58402		1	9606
SDAEYTNSPLVPTFCTPGLK	1	0	Unmodified	2196.0409	0.040885122	1612	Q8IX90	SKA3	Spindle and kinetochore-associated protein 3	yes	yes	0	0	0	13	0													1				19.798	19.798	2	1.0722E-12	15156	DP690-13	177.63	159.53			0.72658	0.84389	NaN	1	0	Median	21523000	13805000	7718300	12412	1612	11564	24150	58403;58404;58405;58406;58407	58406		5	9606
SDALETLGFLNHYQMK	1	0	Oxidation (M)	1881.8931	0.89309867	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	1	0	11.5	1.5									1			2	1				18.935	18.935	2;3	3.8327E-06	14557	DP690-12	140.63	113.07			0.83355	0.91195	25.672	4	0	Median	637850000	396260000	241580000	12413	494	11565	24151;24152;24153;24154	58408;58409;58410;58411;58412;58413;58414;58415;58416	58411	627	9	9606
SDALETLGFLNHYQMK	1	0	Unmodified	1865.8982	0.89818405	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	12	0												2					19.755	19.755	2;3	4.6866E-12	15584	DP690-12	177.36	140.83			NaN	NaN	NaN	0	0	Median	67257000	0	67257000	12414	494	11565	24155;24156	58417;58418;58419	58418		3	9606
SDAPDTLLLEK	1	0	Unmodified	1200.6238	0.62378333	876	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	0	6	0						1											16.764	16.764	2	0.00012456	10219	DP690-6	156.83	156.83			1.3233	1.4941	NaN	1	0	Median	22562000	9739300	12822000	12415	876	11566	24157	58420;58421;58422;58423	58423		4	9606
SDAPTGDVLLDEALK	1	0	Unmodified	1542.7777	0.77771779	2117	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	yes	yes	0	0	0	14	0														1			19.557	19.557	2	0.00077304	15002	DP690-14	116.03	116.03			0.4927	0.59961	NaN	1	0	Median	41465000	27756000	13708000	12416	2117	11567	24158	58424;58425	58424		2	9606
SDATADDLIDVVEGNR	0	1	Unmodified	1688.7853	0.78532236	2436	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	14	0														1			20.682	20.682	2	1.1369E-22	16499	DP690-14	310.85	267.35			0.84342	1.0021	NaN	1	0	Median	116710000	59750000	56958000	12417	2436	11568	24159	58426;58427;58428;58429;58430	58428		5	9606
SDCGVDCCCDPTK	1	0	Unmodified	1572.5313	0.53129798	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										1							11.124	11.124	2	1.183E-10	3826	DP690-10	229.82	208.98			0.81786	1.0111	NaN	1	0	Median	60816000	31157000	29658000	12418	311	11569	24160	58431;58432;58433;58434	58432		4	9606
SDDDIHPQFR	0	1	Unmodified	1228.5473	0.54726434	1868	Q96HA8	WDYHV1	Protein N-terminal glutamine amidohydrolase	yes	yes	0	0	0	7	0							1										12.351	12.351	3	0.017908	5055	DP690-7	63.426	43.785			0.80114	0.90104	NaN	1	0	Median	31574000	18051000	13522000	12419	1868	11570	24161	58435;58436	58436		2	9606
SDDELLDDFFHDQSTATSQAGTLSSIPTALTR	0	1	Unmodified	3438.6063	0.60630195	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															23.006	23.006	3	1.1723E-07	16718	DP690-2	82.508	71.197			1.2832	1.312	NaN	1	0	Median	2376700	986800	1389900	12420	1555	11571	24162	58437;58438;58439;58440;58441;58442;58443	58442		7	9606
SDEAVKPFGLK	2	0	Unmodified	1189.6343	0.63428844	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2.67	0.471		1	2														13.755	13.755	2	8.3058E-06	6887	DP690-3	162.88	86.399			0.72504	0.75269	NaN	1	0	Median	172690000	97591000	75103000	12421	789	11572	24163;24164;24165	58444;58445;58446;58447;58448;58449;58450;58451;58452;58453	58448		10	9606
SDEENLKEECSSTESTQQEHEDAPSTK	2	0	Unmodified	3094.2793	0.27929008	1571	Q86UU1	PHLDB1	Pleckstrin homology-like domain family B member 1	yes	yes	0	0	1	10	0										1							11.448	11.448	4	3.1411E-17	4338	DP690-10	170.58	160.69			0.55098	0.69636	NaN	1	0	Median	42613000	25664000	16948000	12422	1571	11573	24166	58454;58455;58456;58457;58458;58459	58457		6	9606
SDEFSLADALPEHSPAK	1	0	Acetyl (Protein N-term)	1854.8636	0.86357268	1685	Q8NDC0	MAPK1IP1L	MAPK-interacting and spindle-stabilizing protein-like	yes	yes	1	0	0	7	0							1										19.482	19.482	2	2.5467E-22	13846	DP690-7	249.28	208.66			0.71648	0.76639	NaN	1	0	Median	70954000	40582000	30373000	12423	1685	11574	24167	58460;58461;58462;58463	58461		4	9606
SDEGQLSPATR	0	1	Unmodified	1159.5469	0.54692999	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.17	3.29		1								3	1	1					11.154	11.154	2	8.7027E-05	3856	DP690-11	176.6	136.33			0.75954	0.83412	0.54041	2	0	Median	428340000	360400000	67939000	12424	1319	11575	24168;24169;24170;24171;24172;24173	58464;58465;58466;58467;58468;58469;58470;58471;58472;58473;58474;58475;58476;58477	58468		14	9606
SDEVTQEISDETR	0	1	Unmodified	1507.6638	0.66381024	2488	Q9Y4K4	MAP4K5	Mitogen-activated protein kinase kinase kinase kinase 5	yes	yes	0	0	0	3	0			3														15.099	15.099	2	0.0039104	8746	DP690-3	146.71	103.4			NaN	NaN	NaN	0	0	Median	3472200	3472200	0	12425	2488	11576	24174;24175;24176	58478;58479;58480	58479		3	9606
SDFFELLSNHHLDSQSR	0	1	Unmodified	2030.9446	0.94461697	113	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	10	0										1							18.417	18.417	3	0.00094208	14558	DP690-10	80.488	68.898			0.8221	1.0175	NaN	1	0	Median	108510000	54312000	54193000	12426	113	11577	24177	58481;58482;58483	58481		3	9606
SDGALLLGASSLSGR	0	1	Unmodified	1402.7416	0.74160705	1976	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	6	0						1											18.186	18.186	2	1.0449E-06	11916	DP690-6	215.72	163			2.7872	3.1381	NaN	1	0	Median	21805000	5904100	15901000	12427	1976	11578	24178	58484;58485	58484		2	9606
SDGGYTYDTSDLAAIK	1	0	Unmodified	1675.7577	0.75771063	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	8	4				1								1					17.41	17.41	2	4.2146E-07	12408	DP690-12	163.45	136.01			0.93917	1.0627	22.817	2	0	Median	111280000	59630000	51646000	12428	886	11579	24179;24180	58486;58487;58488;58489;58490;58491	58488		6	9606
SDGIYIINLK	1	0	Unmodified	1134.6285	0.62847478	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	0	12	4.32						1								1		1	18.755	18.755	2	0.00042361	13933	DP690-14	120.87	60.75			1.0968	1.2576	17.895	3	0	Median	744870000	368070000	376800000	12429	428	11580	24181;24182;24183	58492;58493;58494;58495;58496;58497;58498;58499;58500;58501;58502;58503;58504	58495		13	9606
SDGSGESAQPPEDSSPPASSESSSTR	0	1	Unmodified	2535.0481	0.048091582	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															11.424	11.424	2	0.0021305	3573	DP690-2	70.783	62.808			0.76201	0.77977	NaN	1	0	Median	1615400	710390	905050	12430	1555	11581	24184	58505;58506;58507;58508	58507		4	9606
SDHLTVVNAFEGWEEAR	0	1	Unmodified	1958.9123	0.91225421	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	11	0											1						19.456	19.456	3	8.3353E-05	15880	DP690-11	112.91	94.46			0.72265	0.86702	NaN	1	0	Median	61394000	36919000	24476000	12431	2105	11582	24185	58509	58509		1	9606
SDHPGISITDLSK	1	0	Unmodified	1368.6885	0.68850885	1139	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	11	0											1						15.021	15.021	2	0.02586	9407	DP690-11	92.866	50.865			NaN	NaN	NaN	0	0	Median	16220000	0	16220000	12432	1139	11583	24186	58510	58510		1	9606
SDIDEIVLVGGSTR	0	1	Unmodified	1459.7518	0.75183739	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	4	0				3													18.79	18.79	2	2.343E-19	13287	DP690-4	289.71	233.28			1.9055	2.0924	NaN	1	0	Median	49788000	11140000	38648000	12433	462	11584	24187;24188;24189	58511;58512;58513;58514	58512		4	9606
SDIGEVILVGGMTR	0	1	Oxidation (M)	1461.7497	0.7497289	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	0	4	0				1													18.316	18.316	2	0.0028402	12717	DP690-4	148.28	101.09			NaN	NaN	NaN	0	0	Median	0	0	0	12434	695	11585	24190	58515	58515	1014	1	9606
SDISQPASQDGMR	0	1	Unmodified	1390.6147	0.61469198	1654	Q8N3X1	FNBP4	Formin-binding protein 4	yes	yes	0	0	0	10	0										1							11.938	11.938	2	0.00011671	5114	DP690-10	122.94	70.153			0.51984	0.65016	NaN	1	0	Median	15453000	8654800	6798100	12435	1654	11586	24191	58516	58516		1	9606
SDKTEEIAEEEETVFPK	2	0	Unmodified	1979.9211	0.92114714	2195	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	11	0											1						16.992	16.992	3	0.00044622	12303	DP690-11	91.475	91.475			0.81212	0.94833	NaN	1	0	Median	62465000	31854000	30611000	12436	2195	11587	24192	58517;58518;58519;58520	58519		4	9606
SDLEMQYETLQEELMALK	1	0	2 Oxidation (M)	2202.0072	0.0072017319	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	2	0	5	4	1								1								23.198	23.198	2	5.3444E-38	18583	DP690-9	228.38	191.05		+	NaN	NaN	NaN	0	0	Median	9142700	9142700	0	12437	667	11588	24193;24194	58521;58522;58523;58524;58525	58525	940;941	5	9606
SDLEMQYETLQEELMALK	1	0	Oxidation (M)	2186.0123	0.01228711	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	9	0									2								23.836	23.836	2	0.0094124	19287	DP690-9	99.531	69.093		+	NaN	NaN	NaN	0	0	Median	646110	646110	0	12438	667	11588	24195;24196	58526;58527	58526	940;941	2	9606
SDLEMQYETLQEELMALKK	2	0	2 Oxidation (M)	2330.1022	0.10216475	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	2	1	6	4.52	2	1		1		1	1	1	1							1	21.106	21.106	2;3	8.4225E-14	12730	DP690-1	177.67	125.49		+	NaN	NaN	NaN	0	0	Median	117060000	117060000	0	12439	667	11589	24197;24198;24199;24200;24201;24202;24203;24204;24205	58528;58529;58530;58531;58532;58533;58534;58535;58536;58537;58538;58539;58540;58541;58542;58543;58544;58545;58546;58547	58529	940;941	20	9606
SDLEYQLENIQVLYSHEK	1	0	Unmodified	2207.0746	0.074628091	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	10	0										1							20.032	20.032	3	0.025214	16870	DP690-10	50.938	50.938			0.65177	0.80513	NaN	1	0	Median	78887000	48049000	30838000	12440	106	11590	24206	58548;58549	58548		2	9606
SDMLKDIIK	2	0	Oxidation (M)	1077.574	0.57399637	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	1	1	4	0				1													13.755	13.755	2	0.032063	6917	DP690-4	94.309	44.892			0.9677	1.0023	NaN	1	0	Median	18859000	9212400	9646200	12441	2405	11591	24207	58550;58551;58552	58552	2829	3	9606
SDMMSHLVK	1	0	Unmodified	1046.4889	0.48888653	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	11	0											1						13.426	13.426	2	0.0089636	7105	DP690-11	90.601	57.788			0.91478	1.0399	NaN	1	0	Median	193190000	98906000	94287000	12442	652	11592	24208	58553;58554	58553		2	9606
SDPFLEIFR	0	1	Unmodified	1122.571	0.5709599	1813	Q96A23	CPNE4	Copine-4	yes	yes	0	0	0	12	0												2					21.723	21.723	2	0.043631	18017	DP690-12	95.815	47.967			NaN	NaN	NaN	0	0	Median	0	0	0	12443	1813	11593	24209;24210	58555;58556	58556		2	9606
SDPFVPPAASSEPLSTPWNELNYVGGR	0	1	Unmodified	2886.3824	0.38243743	192	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	11	0											1						22.44	22.44	2	0.0044925	19806	DP690-11	83.37	62.123			NaN	NaN	NaN	0	0	Median	0	0	0	12444	192	11594	24211	58557	58557		1	9606
SDPGLLTNTMDVFVK	1	0	Unmodified	1635.8178	0.81780846	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							21.392	21.392	2	1.3805E-06	16489	DP690-9	208.74	154.99			0.78772	0.97466	3.5858	2	0	Median	86018000	48448000	37570000	12445	1046	11595	24212;24213	58558;58559;58560;58561;58562;58563;58564;58565;58566	58565		9	9606
SDPGLLTNTMDVFVK	1	0	Oxidation (M)	1651.8127	0.81272309	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									2								20.047	20.047	2	6.9069E-06	13248	DP690-9	177.04	121.32			0.82349	0.98058	36.31	2	0	Median	93039000	55176000	37863000	12446	1046	11595	24214;24215	58567;58568;58569;58570;58571;58572	58569	1636	6	9606
SDPIQEIR	0	1	Unmodified	956.49271	0.49270958	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	9	4					1								1				13.775	13.775	2	0.0043262	7057	DP690-13	126.28	65.49			0.78948	0.80543	NaN	1	0	Median	587310000	294560000	292750000	12447	1989	11596	24216;24217	58573;58574;58575	58574		2	9606
SDPLGSTQDHALSQESSEPGCR	0	1	Unmodified	2357.019	0.018980481	1451	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	10	0										1							13.467	13.467	3	0.0065678	7252	DP690-10	83.776	59.395			NaN	NaN	NaN	0	0	Median	23142000	23142000	0	12448	1451	11597	24218	58576	58576		1	9606
SDPLLIGIPTSENPFK	1	0	Unmodified	1726.9142	0.91415169	2313	Q9UBI6	GNG12	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12	yes	yes	0	0	0	16	0																1	21.552	21.552	2	0.00015947	16458	DP690-16	119.21	119.21			0.49223	0.57347	NaN	1	0	Median	3899800	2536200	1363600	12449	2313	11598	24219	58577;58578;58579;58580	58579		4	9606
SDPTSYAGYIEDLKK	2	0	Unmodified	1685.8148	0.81483158	889	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	1	14	0														1			17.45	17.45	3	0.0085747	12199	DP690-14	100.18	77.337			NaN	NaN	NaN	0	0	Median	31391000	31391000	0	12450	889	11599	24220	58581;58582	58581		2	9606
SDQDHSMDEMTAVVK	1	0	Acetyl (Protein N-term);2 Oxidation (M)	1765.7135	0.71347933	413	P08047	SP1	Transcription factor Sp1	yes	yes	1	2	0	3	0			1														11.624	11.624	2	5.1257E-05	4173	DP690-3	116.03	116.03			0.69457	0.72619	NaN	1	0	Median	3266600	1611900	1654700	12451	413	11600	24221	58583;58584;58585;58586;58587;58588	58583	457;458	6	9606
SDQKQEQLLLK	2	0	Unmodified	1328.73	0.72997974	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	1	3	0			1														12.523	12.523	2	0.0020979	5309	DP690-3	112.11	79.501			0.9975	1.0855	NaN	1	0	Median	10685000	4813000	5871500	12452	724	11601	24222	58589;58590;58591;58592	58592		4	9606
SDQNLQTALELTR	0	1	Unmodified	1487.758	0.7579854	320	O95373	IPO7	Importin-7	yes	yes	0	0	0	3	0			1														17.768	17.768	2	5.6426E-05	12353	DP690-3	209.85	175.96			1.0811	1.2447	NaN	1	0	Median	20895000	10147000	10747000	12453	320	11602	24223	58593;58594	58593		2	9606
SDQQLDCALDLMR	0	1	Acetyl (Protein N-term)	1605.7127	0.71269147	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	1	0	0	10.5	3.5							1							1			23.099	23.099	2	1.5381E-10	19473	DP690-14	222.18	198.81			0.848	0.99511	6.5725	2	0	Median	65453000	35088000	30366000	12454	769	11603	24224;24225	58595;58596;58597;58598	58596		4	9606
SDQQLDCALDLMR	0	1	Acetyl (Protein N-term);Oxidation (M)	1621.7076	0.70760609	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	1	1	0	13	3.03							1							2	2		20.808	20.808	2	0.0001502	14633	DP690-7	111.5	111.5			0.87899	0.98692	19.377	3	0	Median	46319000	25354000	20965000	12455	769	11603	24226;24227;24228;24229;24230	58599;58600;58601;58602;58603;58604;58605;58606	58606	1147	8	9606
SDQWKPLNLEEK	2	0	Unmodified	1485.7464	0.74635808	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	10	0										1							15.239	15.239	3	0.059411	9920	DP690-10	48.115	24.695			0.81375	1.0026	NaN	1	0	Median	95089000	46076000	49013000	12456	1111	11604	24231	58607	58607		1	9606
SDSEKLNLDSIIGR	1	1	Acetyl (Protein N-term)	1587.8104	0.8104149	963	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	1	0	1	6	0						1											19.828	19.828	2	0.0008635	13820	DP690-6	136.01	101.51			NaN	NaN	NaN	0	0	Median	12277000	0	12277000	12457	963	11605	24232	58608	58608		1	9606
SDSFENPVLQQHFR	0	1	Unmodified	1702.8063	0.80633258	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	8	4				2								2					16.152	16.152	2;3	3.0943E-07	9999	DP690-4	169.93	131.35			1.3058	1.4407	78.539	2	0	Median	288590000	159140000	129450000	12458	479	11606	24233;24234;24235;24236	58609;58610;58611;58612;58613;58614;58615;58616	58616		8	9606
SDSGKPYYYNSQTK	2	0	Unmodified	1636.7369	0.73691561	254	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	1	11	0											2						10.708	10.708	3	0.00060695	3192	DP690-11	93.716	78.728			0.92714	1.0904	NaN	1	0	Median	50663000	31278000	19386000	12459	254	11607	24237;24238	58617;58618;58619	58617		3	9606
SDSILLTHDGR	0	1	Unmodified	1212.6099	0.6098646	350	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	0	0	12	0												1					12.846	12.846	2	0.00068188	6011	DP690-12	109.44	38.623			0.78356	0.92032	NaN	1	0	Median	90025000	48166000	41859000	12460	350	11608	24239	58620;58621	58620		2	9606
SDSNPLTEILK	1	0	Unmodified	1215.6347	0.63468237	1876	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	13	0													1				19.653	19.653	2	0.051396	15010	DP690-13	61.56	35.752			0.69949	0.81041	NaN	1	0	Median	17169000	9658600	7510700	12461	1876	11609	24240	58622	58622		1	9606
SDSVDYGQTHYYHQR	0	1	Unmodified	1854.7921	0.79213907	2419	Q9UPU9	SAMD4A	Protein Smaug homolog 1	yes	yes	0	0	0	8	4				1								1					11.423	11.423	3	2.5334E-05	3969	DP690-4	124.07	103.98			1.0122	1.1994	7.4917	2	0	Median	16987000	7907300	9079300	12462	2419	11610	24241;24242	58623;58624;58625;58626;58627	58626		5	9606
SDTATGGESAGHATSSQEPSGCSDQRPAEDLNIR	0	2	Unmodified	3487.5142	0.51420925	1776	Q92575	UBXN4	UBX domain-containing protein 4	yes	yes	0	0	1	8	4				1								1					12.769	12.769	4	8.5696E-12	5918	DP690-12	135.84	135.84			0.65286	0.74024	NaN	1	0	Median	41748000	27392000	14356000	12463	1776	11611	24243;24244	58628;58629;58630;58631;58632;58633	58630		6	9606
SDTTDSSQGLQDKEQNLTR	1	1	Unmodified	2121.9774	0.97743324	200	O60293	ZFC3H1	Zinc finger C3H1 domain-containing protein	yes	yes	0	0	1	10	0										1							12.772	12.772	3	0.00015777	6324	DP690-10	103.88	86.316			1.7408	2.1327	NaN	1	0	Median	27161000	10995000	16165000	12464	200	11612	24245	58634;58635	58634		2	9606
SDVCTPGGTTIYGLHALEQGGLR	0	1	Unmodified	2401.1696	0.16960788	1407	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	0	0	7	0							1										18.588	18.588	3	1.9135E-06	12851	DP690-7	127.5	111.52			1.3615	1.5115	NaN	1	0	Median	44874000	13776000	31097000	12465	1407	11613	24246	58636;58637;58638;58639	58637		4	9606
SDVEAIFSK	1	0	Unmodified	994.49713	0.49712625	410	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	14	0														1			16.412	16.412	2	0.00033999	10777	DP690-14	158.07	101.53			1.107	1.2724	NaN	1	0	Median	264520000	132280000	132230000	12466	410	11614	24247	58640;58641;58642	58640		3	9606
SDVKFEDRFDK	2	1	Unmodified	1384.6623	0.6622941	2173	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	2	13	0													1				12.443	12.443	3	0.003503	5230	DP690-13	106.4	78.168			0.70306	0.77622	NaN	1	0	Median	25026000	14979000	10047000	12467	2173	11615	24248	58643;58644	58644		2	9606
SDVLETVVLINPSDEAVSTEVR	0	1	Unmodified	2371.2118	0.21184985	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	9	0									1								21.416	21.416	2	1.8261E-05	16518	DP690-9	154.07	117.97			NaN	NaN	NaN	0	0	Median	0	0	0	12468	763	11616	24249	58645	58645		1	9606
SDVLQPGAEVTTDDR	0	1	Unmodified	1601.7533	0.75329395	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	7.67	3.4			1						1		1						14.666	14.666	2	1.1686E-05	8218	DP690-3	153.49	104.5			0.83613	0.95059	12.455	3	0	Median	288860000	160170000	128690000	12469	883	11617	24250;24251;24252	58646;58647;58648;58649;58650;58651;58652;58653;58654;58655;58656;58657;58658	58656		13	9606
SDVNKEYYTQNMER	1	1	Oxidation (M)	1791.7734	0.77337747	2242	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	1	1	14	1													1		1		10.75	10.75	3	2.2384E-05	3095	DP690-13	156.96	126.4			1.021	1.1714	0.34816	2	0	Median	122240000	61445000	60793000	12470	2242	11618	24253;24254	58659;58660;58661;58662;58663;58664;58665;58666;58667	58662	2713	9	9606
SDVQIHVPTFTFR	0	1	Unmodified	1545.794	0.79397698	265	O75569	PRKRA	Interferon-inducible double-stranded RNA-dependent protein kinase activator A	yes	yes	0	0	0	14	0														1			18.545	18.545	3	0.030463	13743	DP690-14	54.09	54.09			0.83005	1.0066	NaN	1	0	Median	26882000	14985000	11898000	12471	265	11619	24255	58668	58668		1	9606
SDYAQLLEDMQNAFR	0	1	Unmodified	1799.8148	0.81484835	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	12	0												1					23.978	23.978	2	0.031138	20555	DP690-12	95.401	54.118			NaN	NaN	NaN	0	0	Median	0	0	0	12472	694	11620	24256	58669	58669		1	9606
SDYDGIGSR	0	1	Unmodified	968.41994	0.41993856	96	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	11.5	0.5											1	1					12.202	12.202	2	0.0045213	5017	DP690-12	101.72	62.7			0.92068	1.0427	8.3054	2	0	Median	425800000	227600000	198200000	12473	96	11621	24257;24258	58670;58671;58672;58673	58671		4	9606
SDYDMVDYLNELR	0	1	Oxidation (M)	1647.7087	0.70865195	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	1	0	3	0			1														19.125	19.125	2	0.056169	14068	DP690-3	64.878	43.846			1.1358	1.2698	NaN	1	0	Median	6954500	2780600	4173900	12474	1300	11622	24259	58674;58675	58674		2	9606
SEAAGSPDQGSTYSPAR	0	1	Unmodified	1679.7387	0.73870652	1923	Q96S66	CLCC1	Chloride channel CLIC-like protein 1	yes	yes	0	0	0	8	4				2								2					11.305	11.305	2	1.4134E-22	3910	DP690-4	234.92	220.05			0.66789	0.77219	NaN	1	0	Median	5444000	3710400	1733600	12475	1923	11623	24260;24261;24262;24263	58676;58677;58678;58679;58680;58681;58682;58683	58681		8	9606
SEAANGNLDFVLSFLK	1	0	Unmodified	1723.8781	0.87810054	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10	0										1							24.386	24.386	2	0.0027457	22302	DP690-10	147.33	109.63			NaN	NaN	NaN	0	0	Median	3915500	3915500	0	12476	732	11624	24264	58684;58685	58684		2	9606
SEADVAQQFQYAVR	0	1	Unmodified	1610.7689	0.76888444	1837	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	11	0											1						17.462	17.462	2	3.8684E-06	12957	DP690-11	182.71	144.99			1.2227	1.4589	NaN	1	0	Median	36042000	15851000	20191000	12477	1837	11625	24265	58686;58687	58686		2	9606
SEAEEAITSFNGHKPPGSSEPITVK	2	0	Unmodified	2611.2766	0.27657538	1346	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	1	14	0														2			15.224	15.224	3;4	1.1503E-15	9110	DP690-14	165.41	165.41			0.5882	0.65722	6.021	2	0	Median	276010000	152240000	123770000	12478	1346	11626	24266;24267	58688;58689;58690;58691;58692;58693;58694;58695;58696	58690		9	9606
SEAKDNFFEVFTPVFER	1	1	Unmodified	2060.9844	0.98435652	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	1	11	0											1						21.67	21.67	3	0.0057202	18843	DP690-11	66.977	66.977			0.92394	1.111	NaN	1	0	Median	14665000	7954600	6710500	12479	1941	11627	24268	58697;58698	58697		2	9606
SEAKPLAVCLGR	1	1	Unmodified	1299.6969	0.69690547	1568	Q86U90	YRDC	YrdC domain-containing protein, mitochondrial	yes	yes	0	0	1	7	0							1										13.203	13.203	3	0.047919	6195	DP690-7	41.401	13.757			0.9429	0.99379	NaN	1	0	Median	14992000	7819500	7172500	12480	1568	11628	24269	58699	58699		1	9606
SEAPETPMEEEAELVLTEK	1	0	Oxidation (M)	2146.9828	0.98276112	1420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	1	0	10	0										1							18.422	18.422	2	0.0082929	14522	DP690-10	98.253	56.044			NaN	NaN	NaN	0	0	Median	14864000	14864000	0	12481	1420	11629	24270	58700	58700	2145	1	9606
SEAYQQQIEMER	0	1	Oxidation (M)	1526.6671	0.66712148	1102	Q03001	DST	Dystonin	yes	yes	0	1	0	9	0									1								13.214	13.214	2	0.0042302	6112	DP690-9	91.937	69.251			0.77075	0.96413	NaN	1	0	Median	9361900	4420200	4941800	12482	1102	11630	24271	58701;58702;58703	58702	1720	3	9606
SECLNNIGDSSPLIR	0	1	Unmodified	1673.8043	0.80428367	1799	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	3	0			1														16.973	16.973	2	0.020673	11283	DP690-3	93.959	63.567			NaN	NaN	NaN	0	0	Median	6343000	0	6343000	12483	1799	11631	24272	58704	58704		1	9606
SEDDESGAGELTR	0	1	Unmodified	1364.5692	0.56918158	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	8.33	3.77			1								2						12.263	12.263	2	2.0853E-05	5367	DP690-11	179.57	142.81			0.91575	1.0849	24.815	3	0	Median	75557000	41195000	34362000	12484	653	11632	24273;24274;24275	58705;58706;58707;58708;58709;58710	58705		6	9606
SEDDESGAGELTREELR	0	2	Unmodified	1891.8395	0.83954278	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	1	11	0											1						14.324	14.324	3	0.0060996	8369	DP690-11	66.215	39.924			1.0763	1.3268	NaN	1	0	Median	69751000	44125000	25626000	12485	653	11633	24276	58711	58711		1	9606
SEDESETEDEEEKSQEDQEQKR	2	1	Unmodified	2683.0853	0.08526495	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	2	11	0											1						10.525	10.525	4	0.045335	2859	DP690-11	60.669	60.669			0.66412	0.80339	NaN	1	0	Median	110930000	62614000	48320000	12486	581	11634	24277	58712	58712		0	9606
SEDFGVNEDLADSDAR	0	1	Unmodified	1738.7282	0.72820141	365	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	6	0						1											16.654	16.654	2	1.4817E-17	10127	DP690-6	223.22	206.84			0.83229	0.95549	NaN	1	0	Median	9573900	5135200	4438700	12487	365	11635	24278	58713;58714;58715;58716	58716		4	9606
SEDGEIVSTPR	0	1	Unmodified	1188.5622	0.5622457	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	10	0										1							12.67	12.67	2	0.00012737	6133	DP690-10	125.48	85.478			0.69924	0.86578	NaN	1	0	Median	105930000	59151000	46775000	12488	1156	11636	24279	58717;58718;58719	58719		3	9606
SEDLDNSIDKTEAGIK	2	0	Unmodified	1733.8319	0.8319382	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	1	10	0										1							14.469	14.469	3	0.00021636	8762	DP690-10	105.14	77.558			0.91721	1.0757	NaN	1	0	Median	181350000	97194000	84155000	12489	2424	11637	24280	58720;58721	58720		2	9606
SEDLLDYGPFR	0	1	Unmodified	1310.6143	0.61428128	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	11	1.26									1	1		3					20.19	20.19	2	1.9104E-28	16034	DP690-12	255.54	183.05			0.75115	0.93607	10.1	3	0	Median	170280000	72757000	97520000	12490	375	11638	24281;24282;24283;24284;24285	58722;58723;58724;58725;58726;58727;58728	58726		7	9606
SEDPPGQEAGSEEEGSSASGLAK	1	0	Unmodified	2217.9509	0.95094372	240	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	3	0			2														12.812	12.812	2	2.8047E-07	5752	DP690-3	143.67	125.34			1.0253	1.0751	NaN	1	0	Median	4698900	2322000	2376900	12491	240	11639	24286;24287	58729;58730;58731;58732	58729		4	9606
SEDSTKDDIDLDALAAEIEGAGAAK	2	0	Unmodified	2504.1766	0.17658656	228	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	1	10	0										1							21.918	21.918	3	1.878E-10	19388	DP690-10	152.27	139.21			0.92841	1.1871	NaN	1	0	Median	58531000	28108000	30423000	12492	228	11640	24288	58733;58734;58735;58736	58733		4	9606
SEDVWLEAAR	0	1	Unmodified	1174.5619	0.56185177	298	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	11	0											1						17.18	17.18	2	0.03762	12536	DP690-11	68.371	44.602			2.0556	2.47	NaN	1	0	Median	68124000	20001000	48123000	12493	298	11641	24289	58737	58737		1	9606
SEDYVDIVQGNR	0	1	Unmodified	1393.6474	0.64737232	89	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	3	0			1														16.285	16.285	2	0.0031555	10428	DP690-3	128.6	71.792			NaN	NaN	NaN	0	0	Median	14472000	14472000	0	12494	89	11642	24290	58738;58739	58738		2	9606
SEDYVDIVQGR	0	1	Unmodified	1279.6044	0.60444487	1097	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	3	0			1														16.692	16.692	2	0.00055852	10915	DP690-3	111.65	78.759			1.3878	1.5906	NaN	1	0	Median	15235000	7823600	7411100	12495	1097	11643	24291	58740	58740		1	9606
SEEAHAEDSVMDHHFR	0	1	Oxidation (M)	1911.7806	0.78058811	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	1	0	13	0													3				11.176	11.176	3;4	0.00011497	3004	DP690-13	112.96	87.51			0.88576	0.97064	5.8118	3	0	Plateau	603720000	314110000	289610000	12496	1678	11644	24292;24293;24294	58741;58742;58743;58744;58745;58746	58742	2285	6	9606
SEEAHAEDSVMDHHFR	0	1	Unmodified	1895.7857	0.78567349	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	13	0													1				12.253	12.253	4	5.9911E-05	4937	DP690-13	115.82	91.032			0.85697	0.98487	NaN	1	0	Median	205670000	110730000	94940000	12497	1678	11644	24295	58747	58747		1	9606
SEEEFIHINNK	1	0	Unmodified	1358.6466	0.64664404	1316	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	4	0				1													13.789	13.789	2	0.016102	7027	DP690-4	101.46	51.924			NaN	NaN	NaN	0	0	Median	3511400	3511400	0	12498	1316	11645	24296	58748;58749	58749		2	9606
SEEEIDFLR	0	1	Unmodified	1136.535	0.53496832	2429	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	12	0												1					17.822	17.822	2	0.001952	12927	DP690-12	115.49	115.49			0.96596	1.1681	NaN	1	0	Median	15767000	8816000	6951100	12499	2429	11646	24297	58750	58750		1	9606
SEEMQTVQQEQLLQETQALQQSFLSEKDSLLQR	1	1	Oxidation (M)	3907.9109	0.91094017	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	9.5	0.5									1	1							22.566	22.566	3	1.1883E-29	17774	DP690-9	187.89	171.93			0.7612	0.88286	NaN	1	0	Median	50193000	39963000	10230000	12500	1319	11647	24298;24299	58751;58752;58753;58754;58755;58756;58757;58758;58759;58760	58758	2033	10	9606
SEEMQTVQQEQLLQETQALQQSFLSEKDSLLQR	1	1	Unmodified	3891.916	0.91602554	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								22.858	22.858	3	4.3504E-51	18186	DP690-9	228.35	215.67			0.63574	0.73734	NaN	1	0	Median	9583300	5618400	3964900	12501	1319	11647	24300	58761;58762	58762		2	9606
SEEPGAPLPVAVGTAEPGGSMK	1	0	Unmodified	2080.0147	0.014670371	881	P53814	SMTN	Smoothelin	yes	yes	0	0	0	11	0											1						17.038	17.038	2	0.0018238	12358	DP690-11	115.26	69.196			NaN	NaN	NaN	0	0	Median	0	0	0	12502	881	11648	24301	58763	58763		1	9606
SEEPLKTDSSASNSNSELK	2	0	Unmodified	2021.9389	0.93892247	1534	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	1	10	0										1							11.419	11.419	3	0.021898	4298	DP690-10	80.585	53.554			NaN	NaN	NaN	0	0	Median	0	0	0	12503	1534	11649	24302	58764	58764		1	9606
SEFEQNLSEK	1	0	Unmodified	1209.5513	0.55134667	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	11	0											3						13.156	13.156	2	0.0021814	6669	DP690-11	143.04	82.239			0.60519	0.73441	NaN	1	0	Median	76701000	54762000	21939000	12504	1375	11650	24303;24304;24305	58765;58766;58767;58768	58768		4	9606
SEGALELADVSNELPGLK	1	0	Unmodified	1840.9418	0.941823	1141	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	7	4			1								1						20.825	20.825	2	1.6548E-11	16120	DP690-3	175.01	129.35			1.0801	1.2317	9.6674	2	0	Median	42142000	19884000	22258000	12505	1141	11651	24306;24307	58769;58770;58771;58772;58773;58774;58775	58772		7	9606
SEGEDSSDPLQRPPEGK	1	1	Unmodified	1826.8282	0.82824981	218	O60732	MAGEC1	Melanoma-associated antigen C1	yes	yes	0	0	1	3	0			1														11.815	11.815	3	0.00054332	4405	DP690-3	89.866	89.866			0.85747	0.951	NaN	1	0	Median	16875000	8754700	8120000	12506	218	11652	24308	58776;58777;58778	58776		3	9606
SEGEGEAASADDGSLNTSGAGPK	1	0	Unmodified	2105.8985	0.89851422	2244	Q9NWV8	BABAM1	BRISC and BRCA1-A complex member 1	yes	yes	0	0	0	14	0														1			12.692	12.692	2	8.393100000000001E-56	5686	DP690-14	258.96	212.75			NaN	NaN	NaN	0	0	Median	4344200	4344200	0	12507	2244	11653	24309	58779;58780	58779		2	9606
SEGVGTCSEKDPGVLQPVPLGGR	1	1	Unmodified	2338.1587	0.15870885	129	O15014	ZNF609	Zinc finger protein 609	yes	yes	0	0	1	10	0										1							15.452	15.452	3	0.040759	10079	DP690-10	40.137	25.178			0.87856	1.1012	NaN	1	0	Median	42561000	16823000	25738000	12508	129	11654	24310	58781	58781		1	9606
SEGVVAVLLTK	1	0	Unmodified	1114.6598	0.6597749	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0.816	1	1	1														18.724	18.724	2	0.00028413	12028	DP690-2	120.45	62.222			0.91545	0.95336	3.122	3	0	Plateau	160420000	82968000	77448000	12509	789	11655	24311;24312;24313	58782;58783;58784;58785;58786;58787;58788;58789;58790;58791;58792	58785		11	9606
SEGYFGMYR	0	1	Unmodified	1108.4648	0.46478027	2140	Q9H936	SLC25A22	Mitochondrial glutamate carrier 1	yes	yes	0	0	0	14	0														1			16.559	16.559	2	0.037588	11061	DP690-14	71.342	47.387			0.85474	1.0336	NaN	1	0	Median	53307000	30277000	23030000	12510	2140	11656	24314	58793	58793		1	9606
SEHQFNIDSMVHK	1	0	Oxidation (M)	1586.7147	0.71474038	214	O60678	PRMT3	Protein arginine N-methyltransferase 3	yes	yes	0	1	0	4	0				1													11.248	11.248	3	0.024926	3768	DP690-4	57.267	44.775			0.83647	0.90044	NaN	1	0	Median	6160600	3185800	2974800	12511	214	11657	24315	58794	58794	220	1	9606
SEHQKLEENIDNIKR	2	1	Unmodified	1851.9439	0.94388869	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	2	10	0										1							11.218	11.218	4	0.0066607	4023	DP690-10	75.02	75.02			0.67188	0.7667	NaN	1	0	Median	72326000	42638000	29688000	12512	1794	11658	24316	58795	58795		1	9606
SEIDLFNIR	0	1	Unmodified	1105.5768	0.57677356	427	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	7	0							1										19.845	19.845	2	0.00067876	14399	DP690-7	141.52	97.123			1.6788	1.9434	NaN	1	0	Median	10407000	4020300	6386500	12513	427	11659	24317	58796;58797;58798;58799;58800	58796		5	9606
SEIEVISEPPEEK	1	0	Unmodified	1484.7246	0.72461959	234	O75044	SRGAP2	SLIT-ROBO Rho GTPase-activating protein 2	yes	yes	0	0	0	11	0											1						15.419	15.419	2	0.073339	9945	DP690-11	82.029	38.394			NaN	NaN	NaN	0	0	Median	23234000	23234000	0	12514	234	11660	24318	58801	58801		1	9606
SEIEYYAMLAK	1	0	Oxidation (M)	1332.6272	0.62715415	1002	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	1	0	16	0																1	17.448	17.448	2	0.0083116	11610	DP690-16	88.177	69.552			1.0763	1.2373	NaN	1	0	Median	33712000	15756000	17957000	12515	1002	11661	24319	58802;58803	58803	1522	2	9606
SEIIPMFSNLASDEQDSVR	0	1	Oxidation (M)	2152.9947	0.99466321	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	1	0	8	4				1								1					19.484	19.484	2	5.4035E-13	13984	DP690-4	184.11	163.1			1.1228	1.3166	55.027	2	0	Median	38859000	17169000	21690000	12516	624	11662	24320;24321	58804;58805;58806;58807;58808;58809;58810;58811	58808	861	8	9606
SEIQTLKEEIEQSLTK	2	0	Unmodified	1874.9837	0.98368782	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	1	11	1.1									1		2	2					20.47	20.47	2;3	0.00010283	16502	DP690-12	114.06	98.298			0.83275	0.9712	20.495	3	0	Median	62232000	20452000	41780000	12517	1269	11663	24322;24323;24324;24325;24326	58812;58813;58814;58815;58816	58814		4	9606
SEISENTDASGKIEK	2	0	Unmodified	1606.7686	0.76860967	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	11	0											1						11.018	11.018	2	0.045909	3592	DP690-11	117.27	63.7			NaN	NaN	NaN	0	0	Median	3768500	3768500	0	12518	2340	11664	24327	58817	58817		1	9606
SEISLLPSDIDR	0	1	Unmodified	1343.6933	0.69325988	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	9.8	2.93				1							3	1					18.635	18.635	2	0.00023494	14588	DP690-11	142.98	74.611			0.76627	0.90114	20.772	2	0	Median	82632000	45196000	37436000	12519	737	11665	24328;24329;24330;24331;24332	58818;58819;58820;58821;58822;58823;58824	58818		7	9606
SEITELR	0	1	Unmodified	846.4447	0.44469675	42;30	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	no	no	0	0	0	1	0	1																13.023	13.023	2	0.0060101	4772	DP690-1	132.96	50.698		+	NaN	NaN	NaN	0	0	Median	11421000	11421000	0	12520	42;30	11666	24333	58825;58826	58826		2	9606
SELDQLRQEAEQLK	1	1	Acetyl (Protein N-term)	1727.869	0.86899241	999	P62873	GNB1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	yes	yes	1	0	1	14	0														1			20.653	20.653	2	6.6088E-17	16389	DP690-14	278.35	236.11			0.7654	0.90419	NaN	1	0	Median	96043000	55871000	40172000	12521	999	11667	24334	58827;58828;58829	58827		3	9606
SELEEQQMHLNVGLR	0	1	Oxidation (M)	1797.8679	0.86794655	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	9	0									1								14.477	14.477	3	0.00018378	7828	DP690-9	108.32	90.366			0.90206	1.1252	NaN	1	0	Median	17940000	9688100	8252000	12522	1264	11668	24335	58830;58831	58830	1926	2	9606
SELELTLGK	1	0	Unmodified	988.54408	0.54407645	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.8	3.54		1							1	1	1	1					16.496	16.496	2	0.00045059	10429	DP690-9	153.04	59.84			0.85673	0.94771	21.962	3	0	Median	488700000	147840000	340860000	12523	1319	11669	24336;24337;24338;24339;24340	58832;58833;58834;58835;58836;58837;58838;58839;58840;58841;58842;58843	58842		12	9606
SELELTLGKLEQVR	1	1	Unmodified	1613.8988	0.89883598	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9	0									1								18.879	18.879	3	0.01821	13469	DP690-9	85.536	27.495			NaN	NaN	NaN	0	0	Median	0	0	0	12524	1319	11670	24341	58844	58844		1	9606
SELEQLRQEAEQLR	0	2	Acetyl (Protein N-term)	1769.8908	0.89079049	1001	P62879;Q9HAV0	GNB2;GNB4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4	yes	no	1	0	1	14	0														1			20.718	20.718	2	5.0168E-06	16510	DP690-14	163.45	117.62			0.76023	0.89339	NaN	1	0	Median	155110000	74459000	80655000	12525	1001	11671	24342	58845;58846	58845		2	9606
SELLMIIQMETQSSMR	0	1	3 Oxidation (M)	1943.9002	0.90023424	82	O00410	IPO5	Importin-5	yes	yes	0	3	0	3.5	0.5			1	1													20.658	20.658	2	7.5791E-07	15895	DP690-3	160.18	133.4			1.0282	1.1606	NaN	1	0	Median	30370000	14007000	16363000	12526	82	11672	24343;24344	58847;58848;58849;58850;58851	58848	93;94;95	5	9606
SELLQQALCNAK	1	0	Unmodified	1373.6973	0.6972994	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9	0									1								16.834	16.834	2	0.011576	10964	DP690-9	103.55	40.33			NaN	NaN	NaN	0	0	Median	4393800	4393800	0	12527	1102	11673	24345	58852	58852		1	9606
SELLSQLQQHEEESR	0	1	Unmodified	1811.865	0.86496967	1785	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	14	0														1			15.295	15.295	2	0.018416	9306	DP690-14	107.97	56.714			NaN	NaN	NaN	0	0	Median	0	0	0	12528	1785	11674	24346	58853	58853		1	9606
SELMSVTPNTGMSLFIINFEEGR	0	1	2 Oxidation (M)	2603.2247	0.2247395	2187	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	2	0	7	0							2										21.911	21.911	2	8.8594E-05	16859	DP690-7	150.57	116.13			NaN	NaN	NaN	0	0	Median	0	0	0	12529	2187	11675	24347;24348	58854;58855	58855	2665;2666	2	9606
SELPLDPLPVPTEEGNPLLK	1	0	Unmodified	2157.1569	0.15690116	1349	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	9.6	2.87				1						1	2	1					21.913	21.913	2	5.3169E-23	18219	DP690-12	218.45	197.1			0.6177	0.74425	23.493	3	0	Median	36405000	19920000	16485000	12530	1349	11676	24349;24350;24351;24352;24353	58856;58857;58858;58859;58860;58861;58862;58863;58864;58865;58866;58867;58868	58863		13	9606
SELSQDAEPAGSQETK	1	0	Unmodified	1675.7537	0.75368788	2020	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	11	0											1						11.687	11.687	2	4.0104E-07	4590	DP690-11	164.22	103.53			0.85741	1.0533	NaN	1	0	Median	20132000	11054000	9078400	12531	2020	11677	24354	58869;58870	58870		2	9606
SELVAMLEEEELRK	1	1	Oxidation (M)	1690.8448	0.8447515	706	P40616	ARL1	ADP-ribosylation factor-like protein 1	yes	yes	0	1	1	8	0								1									17.144	17.144	3	0.003423	10490	DP690-8	72.321	49.744			0.8292	0.96413	NaN	1	0	Median	4379100	2311500	2067600	12532	706	11678	24355	58871;58872	58871	1034	2	9606
SELVANNVTLPAGEQR	0	1	Unmodified	1696.8744	0.87441214	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	12.5	1.12											1	1	1	1			15.612	15.612	2	3.9065999999999996E-22	9593	DP690-13	242.48	190.55			0.74994	0.82357	10.829	4	0	Linear	286540000	164120000	122410000	12533	723	11679	24356;24357;24358;24359	58873;58874;58875;58876;58877;58878;58879;58880;58881;58882;58883;58884;58885;58886	58885		14	9606
SEMTPEELQK	1	0	Unmodified	1190.5489	0.54890383	980	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	8	0								1									13.042	13.042	2	0.047289	5881	DP690-8	65.157	44.21			1.042	1.2012	NaN	1	0	Median	2950300	1395100	1555200	12534	980	11680	24360	58887	58887		1	9606
SEMTPEELQKREEEEFNTGPLSVLTQSVK	2	1	Oxidation (M)	3350.6188	0.61878089	980	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	1	2	16	0																2	19.915	19.915	3;4	4.1854E-06	14610	DP690-16	101.76	68.778			0.66602	0.73576	NaN	1	0	Median	23839000	12441000	11398000	12535	980	11681	24361;24362	58888;58889;58890	58890	1497	3	9606
SEMVPSCPFIYIIR	0	1	Unmodified	1710.8473	0.84733445	2025	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	12	0												1					21.624	21.624	2	0.00087771	17855	DP690-12	102.52	82.393			0.61612	0.75407	NaN	1	0	Median	4783000	2702600	2080400	12536	2025	11682	24363	58891;58892;58893	58892		3	9606
SEMVPSCPFIYIIR	0	1	Oxidation (M)	1726.8422	0.84224908	2025	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	1	0	12	0												1					20.795	20.795	2	0.0051451	16801	DP690-12	108.43	43.19			NaN	NaN	NaN	0	0	Median	9365600	9365600	0	12537	2025	11682	24364	58894;58895	58894	2561	2	9606
SENGLEFTSSGSANTETTK	1	0	Unmodified	1958.8705	0.87050855	552	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	14	0														1			14.171	14.171	2	2.1366000000000002E-33	7813	DP690-14	272.77	239.91			0.80564	0.98042	NaN	1	0	Median	41646000	23662000	17984000	12538	552	11683	24365	58896;58897;58898;58899	58898		4	9606
SEPIPESNDGPVK	1	0	Unmodified	1367.6569	0.65687437	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	8	4				2								2					12.755	12.755	2	6.0431E-05	5649	DP690-4	140.78	113.45			0.98575	1.0545	NaN	1	0	Median	47742000	26812000	20930000	12539	623	11684	24366;24367;24368;24369	58900;58901;58902;58903;58904;58905;58906;58907	58906		8	9606
SEPKPGLPEDLQK	2	0	Unmodified	1436.7511	0.75110911	1975	Q9BQ75	CMSS1	Protein CMSS1	yes	yes	0	0	1	14	0														2			12.994	12.994	2;3	0.0010722	6092	DP690-14	115.91	91.683			0.67742	0.75844	7.4729	2	0	Median	220280000	122430000	97848000	12540	1975	11685	24370;24371	58908;58909;58910;58911;58912;58913	58912		6	9606
SEPLDAVLIEDELEELHR	0	1	Unmodified	2106.0481	0.04807899	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								21.679	21.679	3	0.00011769	16883	DP690-9	107.03	107.03			0.69243	0.86707	NaN	1	0	Median	5153000	2937500	2215500	12541	1762	11686	24372	58914	58914		1	9606
SEPSGEINIDSSGETVGSGER	0	1	Unmodified	2105.9349	0.93489973	731	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	10	0										1							15.07	15.07	2	0.0057303	9626	DP690-10	144.4	100.64			NaN	NaN	NaN	0	0	Median	0	0	0	12542	731	11687	24373	58915	58915		1	9606
SEPVKEESSELEQPFAQDTSSVGPDR	1	1	Unmodified	2847.3046	0.30464062	1251	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	yes	no	0	0	1	11	0											1						16.191	16.191	3	5.7852E-08	11199	DP690-11	143.25	117.64			0.42655	0.52006	NaN	1	0	Median	54893000	33337000	21557000	12543	1251	11688	24374	58916;58917;58918	58918		3	9606
SEPVKEESSELEQPFAQDTSSVGPDRK	2	1	Unmodified	2975.3996	0.39960364	1251	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	yes	no	0	0	2	11	0											1						15.02	15.02	4	0.001615	9403	DP690-11	59.646	59.646			1.0993	1.3298	NaN	1	0	Median	58657000	34241000	24415000	12544	1251	11689	24375	58919;58920	58919		2	9606
SEQDQAENEGEDSAVLMER	0	1	Oxidation (M)	2151.8862	0.88623497	18	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	1	0	11	0											1						14.321	14.321	2	3.5684E-07	8386	DP690-11	166.79	127.78			NaN	NaN	NaN	0	0	Median	0	0	0	12545	18	11690	24376	58921	58921	22	1	9606
SEQEEYEAEGIAWEPVQYFNNK	1	0	Unmodified	2659.1714	0.1714416	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						21.137	21.137	2	3.4455E-16	18162	DP690-11	246.77	206.56			NaN	NaN	NaN	0	0	Median	6311200	6311200	0	12546	65	11691	24377	58922;58923	58922		2	9606
SEQSVAQLEEEKK	2	0	Unmodified	1503.7417	0.74166663	1135	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	1	4	0				1													11.232	11.232	3	0.0010713	3766	DP690-4	87.719	62.705			1.2448	1.2818	NaN	1	0	Median	8324300	3574800	4749500	12547	1135	11692	24378	58924;58925;58926;58927	58927		4	9606
SEREDEVLLVSSSR	0	2	Unmodified	1604.8006	0.8005785	1701	Q8NFP7	NUDT10	Diphosphoinositol polyphosphate phosphohydrolase 3-alpha	no	no	0	0	1	8	0								1									14.382	14.382	3	0.00052904	7425	DP690-8	96.414	96.414			0.78525	0.82965	NaN	1	0	Median	36897000	19471000	17425000	12548	1701	11693	24379	58928;58929	58929		2	9606
SESEMETDSGVPQNTGMK	1	0	2 Oxidation (M)	1957.7881	0.78810083	1394	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	2	0	4	0				1													10.608	10.608	2	0.0013878	3021	DP690-4	91.307	83.203			0.96559	1.0325	NaN	1	0	Median	2687800	1359000	1328900	12549	1394	11694	24380	58930	58930	2131;2132	1	9606
SESEVEEAAAIIAQRPDNPR	0	2	Unmodified	2181.0662	0.06618867	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	1	12	1.41											2			1			17.961	17.961	2;3	2.484E-135	13703	DP690-11	355.81	317.02			0.76759	0.90205	NaN	1	0	Median	61517000	35483000	26033000	12550	1365	11695	24381;24382;24383	58931;58932;58933;58934	58931		4	9606
SESGHSQPGLYGIER	0	1	Acetyl (Protein N-term)	1657.7696	0.76961272	2093	Q9H0W8	SMG9	Protein SMG9	yes	yes	1	0	0	8	4				1								1					15.09	15.09	2	3.2138E-05	8620	DP690-4	142.12	114.2			0.93498	1.0856	NaN	1	0	Median	6437500	2946700	3490800	12551	2093	11696	24384;24385	58935;58936;58937;58938;58939	58937		5	9606
SETAPAAPAAAPPAEK	1	0	Unmodified	1477.7413	0.7412727	504	P16403	HIST1H1C	Histone H1.2	yes	yes	0	0	0	14	0														1			11.822	11.822	2	0.0019309	4277	DP690-14	88.101	12.028			0.681	0.82608	NaN	1	0	Median	65076000	35591000	29485000	12552	504	11697	24386	58940;58941;58942	58942		3	9606
SETAPAAPAAAPPAEK	1	0	Acetyl (Protein N-term)	1519.7518	0.75183739	504	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	14.5	0.5														1	1		13.867	13.867	2	0.00034526	7066	DP690-15	115.14	19.735			0.65148	0.76111	NaN	1	0	Median	126430000	111120000	15309000	12553	504	11697	24387;24388	58943;58944;58945;58946;58947;58948	58946		6	9606
SETAPAAPAAAPPAEKAPVK	2	0	Acetyl (Protein N-term)	1915.0051	0.005091963	504	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	1	14.5	0.5														1	1		13.258	13.258	2	2.4626E-10	6455	DP690-14	153.2	115.59			0.59131	0.66947	10.199	2	0	Median	133120000	82852000	50265000	12554	504	11698	24389;24390	58949;58950;58951;58952;58953;58954;58955;58956	58949		8	9606
SETAPAAPAAAPPAEKAPVKK	3	0	Acetyl (Protein N-term)	2043.1001	0.10005498	504	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	2	14.5	0.5														1	1		11.813	11.813	3	4.6526E-05	4497	DP690-15	111.93	100.03			0.60824	0.64292	5.0123	2	0	Median	63644000	37108000	26536000	12555	504	11699	24391;24392	58957;58958;58959;58960;58961;58962	58960		6	9606
SETAPAAPAAPAPAEK	1	0	Unmodified	1477.7413	0.7412727	456	P10412	HIST1H1E	Histone H1.4	yes	yes	0	0	0	14	0														1			11.822	11.822	2	0.00032938	4410	DP690-14	110.15	7.015			0.681	0.82608	NaN	1	0	Median	65076000	35591000	29485000	12556	456	11700	24393	58963;58964	58964		2	9606
SETDTSLIR	0	1	Unmodified	1020.5088	0.50875357	702	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	4	0				1													13	13	2	0.00082243	5840	DP690-4	131.06	66.024			1.5545	1.748	NaN	1	0	Median	30756000	11540000	19216000	12557	702	11701	24394	58965;58966;58967;58968	58967		4	9606
SETELKDTYAR	1	1	Unmodified	1311.6307	0.63065962	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	1	3	0			2														11.108	11.108	2;3	0.00050744	3544	DP690-3	150.81	121.66			1.2677	1.4059	13.718	2	0	Median	34617000	15150000	19466000	12558	1190	11702	24395;24396	58969;58970;58971;58972;58973;58974;58975;58976	58971		8	9606
SETVPPAPAASAAPEKPLAGK	2	0	Acetyl (Protein N-term)	2030.0684	0.068420501	1094	Q02539	HIST1H1A	Histone H1.1	yes	yes	1	0	1	14.5	0.5														1	1		14.656	14.656	2	1.6659E-07	8395	DP690-14	141.59	126.9			0.54418	0.61629	22.546	2	0	Median	77439000	48739000	28700000	12559	1094	11703	24397;24398	58977;58978;58979;58980;58981;58982;58983;58984;58985	58979		9	9606
SETVPPAPAASAAPEKPLAGKK	3	0	Acetyl (Protein N-term)	2158.1634	0.16338352	1094	Q02539	HIST1H1A	Histone H1.1	yes	yes	1	0	2	14.5	0.5														1	1		13.193	13.193	3	0.00038271	6328	DP690-15	81.017	65.536			0.56844	0.60085	18.919	2	0	Median	88062000	51100000	36962000	12560	1094	11704	24399;24400	58986;58987;58988;58989;58990;58991;58992;58993	58990		8	9606
SEVATLTAAGK	1	0	Unmodified	1046.5608	0.56078914	678	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	14.5	0.5														1	1		12.743	12.743	2	0.0015828	5666	DP690-14	101.65	71.034			0.7587	0.87576	7.654	2	0	Median	244660000	143580000	101080000	12561	678	11705	24401;24402	58994;58995;58996;58997	58994		4	9606
SEVDMLK	1	0	Oxidation (M)	836.39497	0.39496937	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	1	0	14	0														1			13.453	13.453	1	0.017813	6625	DP690-14	110.63	53.17			NaN	NaN	NaN	0	0	Median	23734000	23734000	0	12562	404	11706	24403	58998	58998	437	1	9606
SEVELAAALSDKR	1	1	Unmodified	1387.7307	0.73070802	1104	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	1	12	0												1					15.034	15.034	2	0.00014773	9081	DP690-12	125.23	68.31			0.61494	0.77855	NaN	1	0	Median	37783000	21972000	15811000	12563	1104	11707	24404	58999;59000;59001;59002	59001		4	9606
SEVERPASIPLSSGYSTASSDSTPR	0	2	Unmodified	2580.2304	0.23035346	2068	Q9C0F1	CEP44	Centrosomal protein of 44 kDa	yes	yes	0	0	1	13	0													1				14.867	14.867	3	1.027E-08	8554	DP690-13	123.71	112.26			0.5925	0.68032	NaN	1	0	Median	40583000	24223000	16359000	12564	2068	11708	24405	59003;59004;59005;59006	59005		4	9606
SEVIGDGNQIEIEIPPTR	0	1	Unmodified	1966.0007	0.0007348666	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	8.83	3.58				2					1			3					19.129	19.129	2	7.0208E-37	13948	DP690-12	286.88	197.44			0.74173	0.85952	27.644	4	0	Median	186340000	100150000	86188000	12565	2210	11709	24406;24407;24408;24409;24410;24411	59007;59008;59009;59010;59011;59012;59013;59014;59015;59016;59017;59018;59019;59020;59021;59022;59023;59024;59025;59026;59027;59028	59008		22	9606
SEVPPDYDKHNPEQK	2	0	Unmodified	1781.822	0.82204222	1684	Q8ND76	CCNY	Cyclin-Y	yes	yes	0	0	1	14	0														1			10.353	10.353	4	0.003543	2612	DP690-14	99.834	70.511			NaN	NaN	NaN	0	0	Median	22419000	22419000	0	12566	1684	11710	24412	59029;59030	59029		2	9606
SEVQQPVHPKPLSPDSR	1	1	Unmodified	1899.9803	0.9802742	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	11	0											1						10.843	10.843	4	0.00070796	3322	DP690-11	83.404	66.525			0.59102	0.64483	NaN	1	0	Median	268830000	175340000	93491000	12567	2340	11711	24413	59031;59032;59033;59034	59033		4	9606
SEVSEEVTENGTEEAAK	1	0	Unmodified	1807.7959	0.79594663	1386	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	yes	yes	0	0	0	13.5	0.5													1	1			13.208	13.208	2	3.7075E-40	6268	DP690-13	325.79	294.07			0.88329	1.0427	1.9986	2	0	Median	49305000	26486000	22819000	12568	1386	11712	24414;24415	59035;59036;59037;59038;59039;59040;59041	59035		7	9606
SEVSSDEDIQFR	0	1	Unmodified	1410.6263	0.62630252	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	7	4			1								1						14.897	14.897	2	0.0020433	9290	DP690-11	94.409	73.632			0.86337	1.0195	3.4621	2	0	Median	114550000	63406000	51148000	12569	713	11713	24416;24417	59042;59043;59044;59045;59046;59047;59048;59049	59043		8	9606
SEVVESTTESQDKENSHQK	2	0	Unmodified	2160.9771	0.97709889	1446	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	1	10	0										1							10.303	10.303	3	4.2924E-31	2629	DP690-10	246.95	228.8			0.87829	1.1289	NaN	1	0	Median	54682000	30229000	24453000	12570	1446	11714	24418	59050;59051;59052	59051		3	9606
SEWGSLLEELVAEGK	1	0	Unmodified	1645.8199	0.81991695	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	11	0											2						23.811	23.811	2	0.010582	21457	DP690-11	103.46	63.881			NaN	NaN	NaN	0	0	Median	3065800	0	3065800	12571	518	11715	24419;24420	59053;59054;59055;59056	59054		4	9606
SEYLQYSLTK	1	0	Unmodified	1230.6132	0.61321864	1554	Q7Z6M4	MTERF4	Transcription termination factor 4, mitochondrial;mTERF domain-containing protein 2 processed	yes	yes	0	0	0	14	0														1			16.068	16.068	2	0.012736	10419	DP690-14	105.52	72.77			NaN	NaN	NaN	0	0	Median	19809000	19809000	0	12572	1554	11716	24421	59057	59057		1	9606
SFAFVGPSR	0	1	Unmodified	966.49232	0.49231565	1371	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	14	0														1			15.85	15.85	2	0.0066456	10021	DP690-14	93.162	56.461			0.7091	0.85992	NaN	1	0	Median	22115000	14899000	7215500	12573	1371	11717	24422	59058;59059;59060	59059		3	9606
SFAGAVSPQEEEEFR	0	1	Unmodified	1681.7584	0.75837933	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	11	0											1						16.501	16.501	2	0.065799	11575	DP690-11	85.554	46.68			NaN	NaN	NaN	0	0	Median	0	0	0	12574	652	11718	24423	59061	59061		1	9606
SFAGAVSPQEEEEFRR	0	2	Unmodified	1837.8595	0.85949036	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	8.17	3.76			2						1		2	1					14.795	14.795	2;3	1.6913E-22	9081	DP690-11	260.6	235.26			0.76475	0.91486	16.053	5	0	Median	1466699999.9999998	793260000	673460000	12575	652	11719	24424;24425;24426;24427;24428;24429	59062;59063;59064;59065;59066;59067;59068;59069;59070;59071;59072;59073;59074;59075;59076;59077;59078;59079	59067		18	9606
SFDLIHSPHGELK	1	0	Unmodified	1478.7518	0.75177781	2410	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	11	0											1						14.316	14.316	3	0.057675	8378	DP690-11	62.298	33.312			NaN	NaN	NaN	0	0	Median	0	0	0	12576	2410	11720	24430	59080	59080		1	9606
SFDLLILK	1	0	Unmodified	947.56917	0.56916898	1706	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	10	0										1							20.86	20.86	2	0.049719	17882	DP690-10	114.78	37.936			NaN	NaN	NaN	0	0	Median	0	0	0	12577	1706	11721	24431	59081	59081		1	9606
SFDSMISTNCTEELENAGVEVLK	1	0	Oxidation (M)	2588.1622	0.16219882	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	1	0	4	0				1													20.609	20.609	2	1.3269E-19	15459	DP690-4	188.59	156.88			0.80477	0.86024	NaN	1	0	Median	2525600	1356100	1169500	12578	353	11722	24432	59082;59083;59084;59085;59086	59086	361	5	9606
SFEAPATINSASLHPEK	1	0	Unmodified	1797.8897	0.88972785	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	6	0						1											14.865	14.865	3	0.028169	8009	DP690-6	74.786	53.435			NaN	NaN	NaN	0	0	Median	0	0	0	12579	2474	11723	24433	59087	59087		1	9606
SFEAPATINSASLHPEKEFLVAGGEDFK	2	0	Unmodified	2990.4662	0.46616706	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	1	10	4						1								1			18.513	18.513	4	4.9095E-08	13694	DP690-14	128.36	120.9			0.91316	0.98151	12.588	2	0	Median	133440000	72728000	60708000	12580	2474	11724	24434;24435	59088;59089;59090	59089		3	9606
SFEEAFQK	1	0	Unmodified	984.45526	0.45526144	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															14.527	14.527	2	0.044225	7196	DP690-2	131.04	89.535			1.5838	1.6063	NaN	1	0	Median	36661000	14846000	21815000	12581	602	11725	24436	59091	59091		0	9606
SFEQISANITK	1	0	Unmodified	1236.635	0.63501672	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	3	0			1														15.916	15.916	2	0.048207	9961	DP690-3	87.298	58.34			NaN	NaN	NaN	0	0	Median	8373600	8373600	0	12582	415	11726	24437	59092	59092		1	9606
SFEVEEVETPNSTPPR	0	1	Unmodified	1816.8479	0.84792262	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	11.5	0.5											1	1					15.948	15.948	2	5.1658E-07	10373	DP690-12	158.01	115.29			0.85136	1.023	NaN	1	0	Median	19031000	9498000	9532600	12583	2344	11727	24438;24439	59093;59094;59095;59096;59097	59094		5	9606
SFFDNISCDDNR	0	1	Unmodified	1488.594	0.59395654	1683	Q8ND56	LSM14A	Protein LSM14 homolog A	yes	yes	0	0	0	12	0												1					17.721	17.721	2	0.0012728	12778	DP690-12	102.53	92.734			0.86144	1.0342	NaN	1	0	Median	19757000	11121000	8636000	12584	1683	11728	24440	59098	59098		1	9606
SFFDNISCDDNRER	0	2	Unmodified	1773.7377	0.73766066	1683	Q8ND56	LSM14A	Protein LSM14 homolog A	yes	yes	0	0	1	12	0												1					15.942	15.942	2	0.00078596	10349	DP690-12	117.14	96.302			0.47496	0.53853	NaN	1	0	Median	15396000	10910000	4485700	12585	1683	11729	24441	59099;59100	59099		2	9606
SFFDNISSELK	1	0	Unmodified	1285.619	0.6190323	2034	Q9BX40	LSM14B	Protein LSM14 homolog B	yes	yes	0	0	0	13	0													1				20.588	20.588	2	0.00063668	16201	DP690-13	109.83	58.637			0.97646	1.1268	NaN	1	0	Median	14971000	7417900	7552600	12586	2034	11730	24442	59101;59102;59103;59104	59101		4	9606
SFFDPTSQHR	0	1	Unmodified	1220.5574	0.5574351	1582	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	12	0												2					13.981	13.981	2;3	3.604E-05	7507	DP690-12	142.98	126.89			0.71629	0.83856	0.34156	2	0	Median	168080000	95150000	72926000	12587	1582	11731	24443;24444	59105;59106;59107;59108	59105		4	9606
SFFSEIISSISDVK	1	0	Unmodified	1557.7926	0.79263957	1015;1458	P63151;Q00005;Q66LE6	PPP2R2A;PPP2R2B;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	no	no	0	0	0	9	4					1								1				25.586	25.586	2	6.0875E-14	20969	DP690-5	220.1	144.59			2.196	2.1898	NaN	1	0	Median	55150000	17976000	37174000	12588	1015;1458	11732	24445;24446	59109;59110;59111;59112;59113;59114	59111		6	9606
SFGGGTGSGFTSLLMER	0	1	Oxidation (M)	1718.7934	0.79338463	11	A6NHL2	TUBAL3	Tubulin alpha chain-like 3	yes	yes	0	1	0	9	4					1								1				19.442	19.442	2	0.0013546	14717	DP690-13	95.264	62.207			1.067	1.3131	NaN	1	0	Median	35295000	11183000	24112000	12589	11	11733	24447;24448	59115;59116;59117;59118	59115	13	4	9606
SFGIEDKDK	2	0	Unmodified	1037.5029	0.50293991	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	1	10	0										1							11.166	11.166	2	0.013791	3978	DP690-10	105.52	42.214			0.68883	0.85119	NaN	1	0	Median	91535000	52862000	38673000	12590	1794	11734	24449	59119;59120	59119		2	9606
SFGTRPLSSGFSPEEAQQQDEEFEK	1	1	Unmodified	2829.2729	0.27294656	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	1	10.5	0.5										1	1						16.692	16.692	3	3.7557E-07	11981	DP690-10	140.04	123.86			0.71741	0.87679	29.956	2	0	Median	174630000	100280000	74357000	12591	2065	11735	24450;24451	59121;59122;59123;59124;59125;59126	59122		6	9606
SFHILAIATK	1	0	Unmodified	1099.639	0.63897988	1840	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	14	0														1			16.028	16.028	2	0.00025528	10296	DP690-14	125.71	125.71			1.0032	1.2186	NaN	1	0	Median	58053000	31435000	26618000	12592	1840	11736	24452	59127;59128;59129	59129		3	9606
SFITTDVNPYYDSFVR	0	1	Unmodified	1922.905	0.90504357	2305	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	11	0											3						20.69	20.69	2	6.8706E-07	17524	DP690-11	145.31	96.231			0.71698	0.8604	NaN	1	0	Median	27047000	12449000	14598000	12593	2305	11737	24453;24454;24455	59130;59131;59132;59133	59130		4	9606
SFLDDPIWR	0	1	Unmodified	1147.5662	0.56620887	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	8	3.56			1							1	1						20.731	20.731	2	0.012354	17615	DP690-11	87.181	54.369			0.72974	0.8708	8.1969	3	0	Median	60215000	34958000	25257000	12594	1531	11738	24456;24457;24458	59134;59135;59136;59137	59135		4	9606
SFLEFAEDVIQVPR	0	1	Unmodified	1648.8461	0.84607213	1127	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	11.5	0.5											1	1					23.808	23.808	2	7.905E-05	21539	DP690-11	147.72	118.76			0.64556	0.80061	NaN	1	0	Median	9158400	5456400	3702000	12595	1127	11739	24459;24460	59138;59139;59140;59141	59138		4	9606
SFLLDLLNATGK	1	0	Unmodified	1290.7184	0.71835242	96	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	9	3.38				2					1	1	1	1	1				23.552	23.552	2	2.4798E-08	19987	DP690-12	210.64	183.97			0.87408	1.0817	25.294	7	0	Median	251390000	130270000	121120000	12596	96	11740	24461;24462;24463;24464;24465;24466;24467	59142;59143;59144;59145;59146;59147;59148;59149;59150;59151;59152;59153;59154;59155;59156;59157;59158;59159;59160;59161;59162;59163;59164;59165;59166;59167;59168;59169;59170;59171;59172;59173;59174	59154		33	9606
SFLSEELGSEVLNLLTNK	1	0	Unmodified	1992.0415	0.041537049	1140	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	11	0											1						26.129	26.129	2	7.5969E-13	24167	DP690-11	179.93	179.93			0.82855	0.9674	NaN	1	0	Median	2193000	1215400	977550	12597	1140	11741	24468	59175;59176;59177;59178;59179	59176		5	9606
SFLSQGQVLK	1	0	Unmodified	1105.6132	0.61315906	773	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	16	0																1	15.924	15.924	2	0.027627	9778	DP690-16	71.692	33.88			0.74906	0.86738	NaN	1	0	Median	28440000	15600000	12840000	12598	773	11742	24469	59180;59181	59180		2	9606
SFLVASVLPGPDGNINSPTR	0	1	Unmodified	2040.064	0.064003825	1541	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	10	0										2							20.118	20.118	2	8.5679E-10	16892	DP690-10	205.62	188.5			0.43247	0.54025	NaN	1	0	Median	30202000	16115000	14088000	12599	1541	11743	24470;24471	59182;59183;59184;59185;59186	59182		5	9606
SFMALSQDIQK	1	0	Unmodified	1266.6278	0.62782285	1275	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	11	0											1						17.177	17.177	2	0.07658	12539	DP690-11	79.974	48.601			NaN	NaN	NaN	0	0	Median	0	0	0	12600	1275	11744	24472	59187	59187		1	9606
SFMHVNTNANFYK	1	0	Oxidation (M)	1587.714	0.71401209	833	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	1	0	8	0								1									13.373	13.373	3	0.0017827	6255	DP690-8	86.288	66.792			0.91394	1.0361	NaN	1	0	Median	9473700	5426000	4047800	12601	833	11745	24473	59188;59189;59190;59191	59188	1265	4	9606
SFMISADMAHAVHPNYLDKHEENHRPLFHK	2	1	2 Oxidation (M)	3602.6936	0.69357478	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	2	2	5	0					1												13.301	13.301	6	0.0064594	5995	DP690-5	47.099	35.258			0.66519	0.70455	NaN	1	0	Median	81956000	42490000	39466000	12602	2385	11746	24474	59192;59193	59193	2814;2815	2	9606
SFNIPLLVLGGGGYTVR	0	1	Unmodified	1761.9778	0.977755	156	O15379	HDAC3	Histone deacetylase 3	yes	yes	0	0	0	13	0													1				23.356	23.356	2	0.00019651	19509	DP690-13	115.8	115.8			0.5793	0.67963	NaN	1	0	Median	3333600	1933400	1400100	12603	156	11747	24475	59194;59195	59194		2	9606
SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK	2	0	Oxidation (M)	4305.0246	0.024589716	1015	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	1	1	5	0					1												21.677	21.677	4	4.3358E-12	16489	DP690-5	99.357	94.956			1.7531	1.7102	NaN	1	0	Median	23295000	10561000	12734000	12604	1015	11748	24476	59196;59197;59198;59199	59197	1537	4	9606
SFNLPMLMLGGGGYTIR	0	1	2 Oxidation (M)	1857.9117	0.91172562	1222	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	2	0	12	0												1					21.137	21.137	2	0.046702	17332	DP690-12	57.414	14.989			0.61204	0.74501	NaN	1	0	Median	11279000	6323200	4955500	12605	1222	11749	24477	59200	59200		1	9606
SFQQSSLSR	0	1	Unmodified	1038.5094	0.50942227	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											1						11.573	11.573	2	0.001952	4387	DP690-11	115.49	76.276			0.79581	0.89909	NaN	1	0	Median	241960000	134510000	107450000	12606	735	11750	24478	59201;59202;59203;59204;59205	59203		5	9606
SFQSLACSPGLPAADR	0	1	Unmodified	1675.7988	0.79880436	1885	Q96JY6	PDLIM2	PDZ and LIM domain protein 2	yes	yes	0	0	0	14	0														3			16.867	16.867	2	2.7414E-58	11443	DP690-14	292.73	240			0.74018	0.88643	NaN	1	0	Median	99454000	49801000	49653000	12607	1885	11751	24479;24480;24481	59206;59207;59208;59209	59209		4	9606
SFSEDVISHK	1	0	Unmodified	1147.551	0.55095274	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9	0									1								12.942	12.942	2	0.0097604	5776	DP690-9	83.998	61.218			0.69364	0.88624	NaN	1	0	Median	11005000	6396200	4608400	12608	1102	11752	24482	59210	59210		1	9606
SFSLDEPPLFIPDNIATIR	0	1	Unmodified	2144.1154	0.11537069	1777	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	10	0										1							23.49	23.49	2	0.017277	21253	DP690-10	90.689	61.899			NaN	NaN	NaN	0	0	Median	2575800	0	2575800	12609	1777	11753	24483	59211;59212	59211		2	9606
SFSSTLLSIFQSSPER	0	1	Unmodified	1784.8945	0.89447888	218	O60732	MAGEC1	Melanoma-associated antigen C1	yes	yes	0	0	0	3	0			1														23.317	23.317	2	3.3806E-12	18940	DP690-3	202.18	172.87			1.0506	1.1862	NaN	1	0	Median	9404600	4403600	5001000	12610	218	11754	24484	59213;59214;59215;59216;59217	59215		5	9606
SFSTASAITPSVSR	0	1	Unmodified	1409.7151	0.71505795	43	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	5	4	1								1								15.136	15.136	2	0.0054752	6739	DP690-1	113.63	57.066		+	NaN	NaN	NaN	0	0	Median	3900200	3900200	0	12611	43	11755	24485;24486	59218;59219	59218		2	9606
SFTDLEELDETELYMCHK	1	0	Oxidation (M)	2274.9661	0.9660652	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	1	0	12	0												1					19.015	19.015	3	0.00055579	14585	DP690-12	88.319	81.769			0.88567	1.0553	NaN	1	0	Median	47289000	24107000	23182000	12612	2521	11756	24487	59220;59221	59220	2959	2	9606
SFTVDIR	0	1	Unmodified	836.43922	0.43921744	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							15.595	15.595	2	0.066916	10447	DP690-10	100.74	49.705			NaN	NaN	NaN	0	0	Median	58849000	0	58849000	12613	1071	11757	24488	59222	59222		1	9606
SFVAGVIR	0	1	Acetyl (Protein N-term)	889.50215	0.50215205	707	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	1	0	0	11	0											1						20.701	20.701	1	0.0030495	17447	DP690-11	60.682	25.858			1.0197	1.2434	NaN	1	0	Median	18031000	9549300	8481400	12614	707	11758	24489	59223	59223		1	9606
SFVEFILEPLYK	1	0	Unmodified	1483.7963	0.79626839	1314	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	11	0											1						24.178	24.178	2	0.020884	21912	DP690-11	97.456	60.345			NaN	NaN	NaN	0	0	Median	0	0	0	12615	1314	11759	24490	59224	59224		1	9606
SFVLNLGK	1	0	Unmodified	876.5069	0.50690308	433	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	12	4								1								1	17.354	17.354	1;2	0.028411	11952	DP690-16	166.78	89.034			0.78166	0.80746	4.4745	2	0	Median	584680000	325000000	259680000	12616	433	11760	24491;24492	59225;59226	59225		0	9606
SFVLNLGKDSNNLCLHFNPR	1	1	Unmodified	2344.1746	0.17463368	433	P09382	LGALS1	Galectin-1	yes	yes	0	0	1	16	0																1	18.277	18.277	4	0.0024676	12715	DP690-16	94.973	63.835			NaN	NaN	NaN	0	0	Median	4720200	4720200	0	12617	433	11761	24493	59227	59227		1	9606
SFYGSTLFLCR	0	1	Unmodified	1349.6438	0.64380726	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.67	0.471		1	2														19.684	19.684	2	0.00010905	13141	DP690-2	149.82	91.212			0.91822	0.95541	NaN	1	0	Median	52890000	21841000	31049000	12618	789	11762	24494;24495;24496	59228;59229;59230;59231;59232;59233	59228		6	9606
SFYPEEVSSMVLTK	1	0	Oxidation (M)	1631.7753	0.77527495	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	8	4				1								1					18.081	18.081	2	0.0011301	13234	DP690-12	105.25	83.596			1.3048	1.4188	47.284	2	0	Median	354690000	151630000	203060000	12619	463	11763	24497;24498	59234;59235;59236;59237;59238;59239;59240;59241;59242	59237	548	9	9606
SFYPEEVSSMVLTK	1	0	Unmodified	1615.7804	0.78036033	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	8	4				1								1					19.815	19.815	2	5.9194E-05	15645	DP690-12	154.15	131.14			1.3166	1.4706	45.972	2	0	Median	150010000	71784000	78224000	12620	463	11763	24499;24500	59243;59244;59245;59246;59247;59248;59249;59250	59246		8	9606
SGAAQGLAEVMAGLGVEK	1	0	Unmodified	1686.8611	0.86107026	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							21.763	21.763	2	0.00021576	19132	DP690-10	137.73	104.18			NaN	NaN	NaN	0	0	Median	17399000	0	17399000	12621	1782	11764	24501	59251;59252	59251		2	9606
SGALDVLQMKEEDVLK	2	0	Acetyl (Protein N-term);Oxidation (M)	1831.9237	0.9237301	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	1	1	1	12	4.32						1								1		1	20.528	20.528	2	2.5233E-22	15269	DP690-16	231.07	231.07			0.92082	1.0236	3.4554	3	0	Median	688280000	355450000	332830000	12622	428	11765	24502;24503;24504	59253;59254;59255;59256;59257;59258;59259;59260;59261;59262;59263;59264	59257	497	12	9606
SGALDVLQMKEEDVLK	2	0	Acetyl (Protein N-term)	1815.9288	0.92881548	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	1	0	1	14	0														2			21.196	21.196	2	3.2986E-49	16750	DP690-14	341.72	281.07			0.84211	0.93626	3.6585	2	0	Median	995290000	530820000	464470000	12623	428	11765	24505;24506	59265;59266;59267;59268;59269;59270;59271	59268		7	9606
SGAQASSTPLSPTR	0	1	Unmodified	1358.679	0.6790068	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	10.7	4.11				2					1		2	1		1	1	1	11.37	11.37	2	2.2146E-15	4112	DP690-11	231.07	203.21			0.63176	0.72447	10.173	7	0	Median	552400000	337420000	214980000	12624	359	11766	24507;24508;24509;24510;24511;24512;24513;24514;24515	59272;59273;59274;59275;59276;59277;59278;59279;59280;59281;59282;59283;59284;59285;59286;59287;59288;59289;59290;59291;59292;59293;59294;59295;59296;59297;59298;59299;59300;59301;59302	59276		31	9606
SGAVQGAGSLGPGSPVR	0	1	Unmodified	1495.7743	0.77430417	2299	Q9P270	SLAIN2	SLAIN motif-containing protein 2	yes	yes	0	0	0	11.5	0.5											1	1					13.533	13.533	2	2.2891E-08	7276	DP690-11	177.36	123.35			0.72753	0.87258	15.566	2	0	Median	94728000	56088000	38640000	12625	2299	11767	24516;24517	59303;59304;59305;59306;59307;59308	59304		6	9606
SGAYLIPLLER	0	1	Unmodified	1230.6972	0.69722304	589	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	9.67	4.03				1								1	1				20.569	20.569	2	8.1093E-05	16194	DP690-13	128.91	105.38			0.84835	1.0069	21.376	3	0	Plateau	83947000	44779000	39167000	12626	589	11768	24518;24519;24520	59309;59310;59311;59312;59313;59314;59315;59316;59317;59318;59319	59317		11	9606
SGCDEVSSTSEIGTR	0	1	Unmodified	1583.6733	0.67332907	2107	Q9H2Y7	ZNF106	Zinc finger protein 106	yes	yes	0	0	0	9	0									1								12.671	12.671	2	0.00077032	5429	DP690-9	164.04	135.08			NaN	NaN	NaN	0	0	Median	0	0	0	12627	2107	11769	24521	59320	59320		1	9606
SGCIVNNLAEFTVDPK	1	0	Unmodified	1762.856	0.85598488	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							19.582	19.582	2	5.18E-06	16344	DP690-10	133.71	109.64			0.68195	0.84042	NaN	1	0	Median	153940000	90166000	63777000	12628	250	11770	24522	59321;59322;59323;59324;59325	59323		5	9606
SGDAAIVDMVPGK	1	0	Oxidation (M)	1274.6177	0.61765209	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	0	13	0													1				14.224	14.224	2	0.00046627	7454	DP690-13	115.23	87.15			0.8137	0.9232	NaN	1	0	Median	124940000	67537000	57399000	12629	1031	11771	24523	59326;59327;59328;59329	59326	1568	4	9606
SGDAAIVDMVPGK	1	0	Unmodified	1258.6227	0.62273747	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	13	0													1				16.801	16.801	2	0.00099638	11190	DP690-13	103.08	67.175			0.8024	0.91425	NaN	1	0	Median	111960000	58764000	53197000	12630	1031	11771	24524	59330;59331;59332;59333	59332		4	9606
SGDAAIVDMVPGKPMCVESFSDYPPLGR	1	1	2 Oxidation (M)	3026.3824	0.38237913	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	2	1	11.9	2.91					1	1			1	1	1		8	1	1	1	20.385	20.385	3	2.9445E-12	13327	DP690-13	152.28	133.36			0.65621	0.75303	13.817	12	0	Median	2806000000	1704099999.9999998	1101900000	12631	1031	11772	24525;24526;24527;24528;24529;24530;24531;24532;24533;24534;24535;24536;24537;24538;24539;24540	59334;59335;59336;59337;59338;59339;59340;59341;59342;59343;59344;59345;59346;59347;59348;59349;59350;59351;59352;59353;59354;59355;59356;59357;59358;59359;59360;59361;59362;59363;59364;59365;59366;59367;59368;59369;59370;59371;59372;59373;59374;59375;59376;59377;59378;59379;59380;59381;59382;59383;59384;59385;59386;59387;59388;59389;59390;59391;59392;59393;59394;59395;59396;59397;59398;59399;59400	59346	1567;1568	67	9606
SGDAAIVDMVPGKPMCVESFSDYPPLGR	1	1	Unmodified	2994.3925	0.39254989	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	9.25	2.86					1				1	1			1				20.476	20.476	3	1.179E-17	16011	DP690-13	167.04	155.94			0.67467	0.78538	23.681	4	0	Median	292550000	175520000	117030000	12632	1031	11772	24541;24542;24543;24544	59401;59402;59403;59404;59405;59406;59407	59403		7	9606
SGDAAIVDMVPGKPMCVESFSDYPPLGR	1	1	Oxidation (M)	3010.3875	0.38746451	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	10.9	3.59					2					1			3	2			20.314	20.314	3	2.8785E-25	14338	DP690-13	185.64	175.38			0.70185	0.726	10.313	6	0	Median	1475799999.9999998	842800000	632970000	12633	1031	11772	24545;24546;24547;24548;24549;24550;24551;24552	59408;59409;59410;59411;59412;59413;59414;59415;59416;59417;59418;59419;59420;59421;59422;59423;59424	59410	1567;1568	17	9606
SGDETPGSEVPGDKAAEEQGDDQDSEK	2	0	Unmodified	2776.1431	0.14311418	1376	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	1	11	0											1						12.256	12.256	3	0.037611	5352	DP690-11	60.814	41.745			NaN	NaN	NaN	0	0	Median	0	0	0	12634	1376	11773	24553	59425	59425		1	9606
SGDGEGTPVEHVR	0	1	Unmodified	1338.6164	0.61640654	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	3	0			1														10.396	10.396	3	0.058207	2667	DP690-3	45.28	29.026			0.84004	0.93325	NaN	1	0	Median	41143000	22530000	18613000	12635	1531	11774	24554	59426;59427	59426		2	9606
SGDSEVYQLGDVSQK	1	0	Unmodified	1610.7424	0.74239491	1112	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	0	0	12	4								1								1	15.546	15.546	2	2.8834E-14	9254	DP690-16	215.72	179.04			0.96983	1.1136	NaN	1	0	Median	35223000	17067000	18156000	12636	1112	11775	24555;24556	59428;59429;59430;59431;59432;59433	59431		6	9606
SGEEDEEILFKER	1	1	Unmodified	1579.7366	0.73658126	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	1	9	0									1								15.411	15.411	3	0.035182	9159	DP690-9	54.276	35.699			0.69978	0.81162	NaN	1	0	Median	15295000	8759700	6535700	12637	808	11776	24557	59434	59434		1	9606
SGELAQEYDKR	1	1	Unmodified	1294.6153	0.61534391	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	1	10	0										2							11.041	11.041	2;3	0.0007517	3782	DP690-10	109.42	80.257			0.87071	1.0534	15.649	2	0	Median	279180000	158150000	121030000	12638	1285	11777	24558;24559	59435;59436;59437;59438	59437		4	9606
SGELPPNINIKEPR	1	1	Acetyl (Protein N-term)	1604.8522	0.85222014	2145	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	1	0	1	14	0														2			16.637	16.637	2	0.007298	11075	DP690-14	93.839	48.178			NaN	NaN	NaN	0	0	Median	0	0	0	12639	2145	11778	24560;24561	59439;59440	59439		2	9606
SGERDCQEFYR	0	2	Unmodified	1445.5994	0.59937627	1894	Q96LW7	C9orf89	Bcl10-interacting CARD protein	yes	yes	0	0	1	16	0																1	11.256	11.256	3	0.022078	3888	DP690-16	60.301	23.157			0.71029	0.75044	NaN	1	0	Median	13713000	8510500	5202600	12640	1894	11779	24562	59441	59441		1	9606
SGERPVTAGEEDEQVPDSIDAR	0	2	Unmodified	2356.0779	0.077875568	2467	Q9Y3D0	FAM96B	Mitotic spindle-associated MMXD complex subunit MIP18	yes	yes	0	0	1	8	0								1									14.02	14.02	3	4.5206E-05	6966	DP690-8	121.14	82.473			NaN	NaN	NaN	0	0	Median	2762500	0	2762500	12641	2467	11780	24563	59442;59443;59444;59445	59442		4	9606
SGFDDPGIFYSDSFGGDAQADEGQAR	0	1	Acetyl (Protein N-term)	2750.1368	0.13684701	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	1	0	0	5.67	3.77			2								1						23.485	23.485	2	6.2122E-31	19064	DP690-3	197.29	187.15			0.73445	0.84478	0.61409	2	0	Median	7361400	4266700	3094600	12642	652	11781	24564;24565;24566	59446;59447;59448;59449;59450;59451;59452;59453	59449		7	9606
SGFEGMFIR	0	1	Unmodified	1042.4906	0.49060109	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	10	0										1							18.709	18.709	2	0.076039	14945	DP690-10	59.35	36.307			0.83623	1.0467	NaN	1	0	Median	38181000	19389000	18792000	12643	808	11782	24567	59454	59454		1	9606
SGFEGMFTK	1	0	Oxidation (M)	1018.443	0.44298219	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	no	0	1	0	9	0									1								13.992	13.992	2	0.031543	7184	DP690-9	80.455	45.63			0.81505	0.9873	NaN	1	0	Median	34617000	19477000	15140000	12644	808	11783	24568	59455;59456	59456	1216	2	9606
SGFSPELIDYLEGK	1	0	Acetyl (Protein N-term)	1595.7719	0.77190413	2504	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	1	0	0	11	0											2						25.291	25.291	2	0.0050532	23179	DP690-11	86.814	64.281			0.77992	0.93411	NaN	1	0	Median	4167000	1845800	2321200	12645	2504	11784	24569;24570	59457;59458;59459	59457		3	9606
SGFSSVSVSR	0	1	Unmodified	1011.4985	0.49852324	31	CON__P02538;P02538	KRT6A	Keratin, type II cytoskeletal 6A	yes	no	0	0	0	1	0	1																13.155	13.155	2	0.002672	4941	DP690-1	133.13	46.268		+	NaN	NaN	NaN	0	0	Median	2869700	2869700	0	12646	31	11785	24571	59460	59460		1	9606
SGGASHSELIHNLR	0	1	Unmodified	1476.7433	0.74333839	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	7.25	0.433							3	1									10.816	10.816	3	1.0095E-05	3361	DP690-7	202.29	202.29			0.88319	1.0058	11.82	3	0	Median	252140000	135620000	116520000	12647	557	11786	24572;24573;24574;24575	59461;59462;59463;59464;59465;59466	59464		6	9606
SGGGFSSGSAGIINYQR	0	1	Unmodified	1656.7856	0.78559713	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	9	5.9	1			1					1						1	1	15.842	15.842	2	2.7594999999999996E-19	9641	DP690-4	260.57	222.88		+	NaN	NaN	NaN	0	0	Median	59645000	59645000	0	12648	369	11787	24576;24577;24578;24579;24580	59467;59468;59469;59470;59471;59472;59473;59474;59475;59476;59477	59474		11	9606
SGGGGDIHQGFQSLLTEVNK	1	0	Unmodified	2043.0021	0.0021318501	661	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	6	0						2											18.289	18.289	3	1.8617E-05	12039	DP690-6	114.55	86			NaN	NaN	NaN	0	0	Median	17094000	11068000	6026700	12649	661	11788	24581;24582	59478;59479;59480;59481;59482	59479		5	9606
SGGGGGGGLGSGGSIR	0	1	Unmodified	1231.5905	0.59052614	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	4.25	3.96	1	1	1								1						10.946	10.946	2	4.5815E-36	2880	DP690-1	241.39	190.19		+	NaN	NaN	NaN	0	0	Median	212330000	212330000	0	12650	667	11789	24583;24584;24585;24586	59483;59484;59485;59486;59487;59488;59489;59490;59491	59483		9	9606
SGGGGSSVSGGGGGGGAGAGGCGGPGGALTR	0	1	Unmodified	2332.021	0.021046166	1657	Q8N594	MPND	MPN domain-containing protein	yes	yes	0	0	0	12	0												1					12.414	12.414	2	2.8358E-07	5358	DP690-12	122.3	102.72			NaN	NaN	NaN	0	0	Median	0	0	0	12651	1657	11790	24587	59492	59492		1	9606
SGGGTGEEPGSQGLNGEAGPEDSTR	0	1	Unmodified	2345.0004	0.0003535287	152	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	4	0				1													12.96	12.96	2	2.6963E-23	5853	DP690-4	194.32	182.35			1.0594	1.2266	NaN	1	0	Median	4878200	2350000	2528200	12652	152	11791	24588	59493;59494;59495;59496	59494		4	9606
SGGLGGSHALLLLR	0	1	Unmodified	1349.7779	0.77793298	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10	0										1							16.564	16.564	3	0.0015729	11799	DP690-10	109.6	77.076			NaN	NaN	NaN	0	0	Median	71117000	71117000	0	12653	732	11792	24589	59497;59498	59497		2	9606
SGGMSNELNNIISR	0	1	Unmodified	1490.7147	0.71474038	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	11	0											1						17.76	17.76	2	0.00033841	13442	DP690-11	142.89	104.09			NaN	NaN	NaN	0	0	Median	26555000	26555000	0	12654	873	11793	24590	59499	59499		1	9606
SGGMSNELNNIISR	0	1	Oxidation (M)	1506.7097	0.709655	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	1	0	9	3.46			1								3						15.894	15.894	2	7.8395E-09	9899	DP690-3	198.97	198.97			0.98084	1.0959	NaN	1	0	Median	36912000	17223000	19688000	12655	873	11793	24591;24592;24593;24594	59500;59501;59502;59503;59504;59505;59506;59507	59507	1325	8	9606
SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK	1	0	Unmodified	3011.2302	0.2302469	1170	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	11	0											1						12.37	12.37	3	5.5959E-16	5556	DP690-11	152.64	150.63			0.77347	0.93631	NaN	1	0	Median	44050000	26205000	17844000	12656	1170	11794	24595	59508;59509	59508		2	9606
SGGQVRDEYRQDYDAGR	0	3	Unmodified	1970.8831	0.88307935	852	P52298	NCBP2	Nuclear cap-binding protein subunit 2	yes	yes	0	0	2	16	0																1	10.729	10.729	3	0.001491	3285	DP690-16	79.471	61.315			0.64135	0.70238	NaN	1	0	Median	7730200	4105900	3624400	12657	852	11795	24596	59510	59510		1	9606
SGGTEGLLAEKLEALITQTR	1	1	Unmodified	2086.127	0.12699801	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	1	11.7	0.471											1	2					22.329	22.329	2;3	2.0977E-14	18709	DP690-12	189.84	167.43			0.71502	0.90194	12.012	2	0	Median	49835000	29227000	20608000	12658	2342	11796	24597;24598;24599	59511;59512;59513;59514;59515;59516;59517;59518	59515		8	9606
SGGVNQYVVQEVLSIK	1	0	Unmodified	1718.9203	0.9202997	1311	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	3	0			1														21.074	21.074	2	0.0021887	16444	DP690-3	86.699	86.699			0.636	0.66681	NaN	1	0	Median	4646200	2642600	2003600	12659	1311	11797	24600	59519	59519		1	9606
SGHSPTRGAMQVAMNGK	1	1	Acetyl (Protein N-term);Oxidation (M)	1785.825	0.82503588	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	1	1	1	5	0					1												16.256	16.256	2	0.075504	9626	DP690-5	45.764	8.0679			NaN	NaN	NaN	0	0	Median	0	0	0	12660	2385	11798	24601	59520	59520		1	9606
SGLAIVSQHDLDQLQADAINAFGESLQK	1	0	Unmodified	2967.4938	0.49377879	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										1							23.715	23.715	3	3.349E-05	21639	DP690-10	96.793	74.911			0.74544	0.91611	NaN	1	0	Median	35043000	19271000	15771000	12661	1783	11799	24602	59521;59522;59523;59524	59522		4	9606
SGLLVLTTPLASLAPR	0	1	Unmodified	1607.961	0.9610423	1178	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	4	0				2													22.584	22.584	2	7.5513E-09	17468	DP690-4	185.25	185.25			0.64485	0.74905	7.701	2	0	Median	17187000	10634000	6552600	12662	1178	11800	24603;24604	59525;59526;59527;59528;59529;59530;59531	59527		7	9606
SGLQGYDMSTFIR	0	1	Oxidation (M)	1489.6871	0.68712864	1214	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	1	0	12	0												1					16.822	16.822	2	0.00062178	11539	DP690-12	110.84	83.534			0.79104	0.94082	NaN	1	0	Median	70185000	39927000	30258000	12663	1214	11801	24605	59532;59533	59532	1859	2	9606
SGLQGYDMSTFIR	0	1	Unmodified	1473.6922	0.69221402	1214	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	12	0												1					19.441	19.441	2	4.4425E-05	15130	DP690-12	134.98	103.34			0.93273	1.1085	NaN	1	0	Median	36612000	18457000	18155000	12664	1214	11801	24606	59534;59535;59536;59537	59536		4	9606
SGLVPQQIK	1	0	Unmodified	968.56548	0.56548059	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							13.705	13.705	2	0.04021	7626	DP690-10	70.525	17.588			0.76278	0.93666	NaN	1	0	Median	161450000	83981000	77469000	12665	1071	11802	24607	59538	59538		1	9606
SGMNFTVGSNFSPWIVK	1	0	Unmodified	1869.9084	0.90835481	1686	Q8NE09	RGS22	Regulator of G-protein signaling 22	yes	yes	0	0	0	14	0														1			15.206	15.206	2	0.0095881	8975	DP690-14	70.728	19.001			0.71515	0.83648	NaN	1	0	Median	189030000	110090000	78938000	12666	1686	11803	24608	59539	59539		1	9606
SGMNFTVGSNFSPWIVK	1	0	Oxidation (M)	1885.9033	0.90326943	1686	Q8NE09	RGS22	Regulator of G-protein signaling 22	yes	yes	0	1	0	11.3	3.77						1								2			15.583	15.583	2	0.0020566	10501	DP690-14	90.614	39.362			0.72199	0.82409	2.5645	3	0	Median	608860000	338710000	270150000	12667	1686	11803	24609;24610;24611	59540;59541;59542;59543;59544	59543	2286	5	9606
SGMVQTEAQYR	0	1	Unmodified	1268.5819	0.58193529	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	4	0				1													12.494	12.494	2	0.00038205	5302	DP690-4	117.31	89.299			0.82657	0.96167	NaN	1	0	Median	8660900	4926300	3734600	12668	1120	11804	24612	59545	59545		1	9606
SGNIVAGIANESK	1	0	Unmodified	1258.6517	0.65172941	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	3.5	0.5			1	1													14.556	14.556	2	7.9059E-05	7905	DP690-4	167.11	129.57			0.91869	0.97641	8.5974	2	0	Median	94320000	49355000	44965000	12669	813	11805	24613;24614	59546;59547;59548;59549;59550;59551;59552	59549		7	9606
SGNIVAGIANESKK	2	0	Unmodified	1386.7467	0.74669243	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	1	3.5	0.5			1	1													12.843	12.843	2	3.7128E-05	5623	DP690-4	127.52	46.604			1.0405	1.1077	8.9964	2	0	Median	15384000	7863300	7520900	12670	813	11806	24615;24616	59553;59554;59555;59556;59557;59558;59559	59555		7	9606
SGNMIQSANDKNFDDEDSVDGNRPSSASSTSSK	2	1	Oxidation (M)	3462.4713	0.47134139	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	1	2	10	0										1							12.228	12.228	4	2.2316E-05	5502	DP690-10	64.126	59.22			0.48544	0.55395	NaN	1	0	Median	45030000	27969000	17060000	12671	1546	11807	24617	59560;59561	59561	2221	2	9606
SGNMIQSANDKNFDDEDSVDGNRPSSASSTSSK	2	1	Unmodified	3446.4764	0.47642676	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	2	10	0										1							13.263	13.263	4	6.6633E-06	7025	DP690-10	103.04	80.386			NaN	NaN	NaN	0	0	Median	26880000	26880000	0	12672	1546	11807	24618	59562;59563	59563		2	9606
SGNVAELALK	1	0	Unmodified	1000.5553	0.55530983	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	4	0				1													14.795	14.795	2	0.057717	8316	DP690-4	61.691	4.5138			1.1668	1.2643	NaN	1	0	Median	26557000	12931000	13626000	12673	788	11808	24619	59564	59564		1	9606
SGNYPSSLSNETDR	0	1	Unmodified	1525.6645	0.66447894	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	0	7.71	3.41					3	1	1						2				13	13	2	1.2631E-15	5625	DP690-5	263.07	230.45			0.68736	0.75353	40.89	7	0	Median	762330000	417320000	345020000	12674	2208	11809	24620;24621;24622;24623;24624;24625;24626	59565;59566;59567;59568;59569;59570;59571;59572;59573;59574;59575;59576;59577;59578;59579;59580;59581;59582	59574		18	9606
SGPASTFNDR	0	1	Unmodified	1050.473	0.47303677	2305	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														11.102	11.102	2	0.028659	3595	DP690-3	71.349	32.096			1.1423	1.2905	NaN	1	0	Median	9555000	4679900	4875200	12675	2305	11810	24627	59583	59583		1	9606
SGPFAPVLSATSR	0	1	Unmodified	1288.6776	0.67755023	444	P47985;P0C7P4	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	yes	no	0	0	0	13.3	3.77								1								2	17.081	17.081	2	9.4659E-05	11132	DP690-16	172.21	132.34			0.70608	0.78664	1.6897	2	0	Median	130450000	85667000	44786000	12676	444	11811	24628;24629;24630	59584;59585;59586;59587;59588;59589;59590;59591	59586		8	9606
SGPFGQIFRPDNFVFGQSGAGNNWAK	1	1	Unmodified	2797.3361	0.33609636	1034;406;2017;370	P07437;P68371;Q9BVA1;Q13885;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain	no	no	0	0	1	8.4	3.44					3	1	2		1				2	1			21.963	21.963	2;3	7.4113E-47	15592	DP690-5	258.17	230.52			0.84484	0.95315	11.48	8	0	Median	1995099999.9999998	1028699999.9999999	966430000	12677	406;1034;2017;370	11812	24631;24632;24633;24634;24635;24636;24637;24638;24639;24640	59592;59593;59594;59595;59596;59597;59598;59599;59600;59601;59602;59603;59604;59605;59606;59607;59608;59609;59610;59611;59612;59613;59614;59615;59616;59617;59618;59619;59620;59621;59622;59623;59624;59625	59613		34	9606
SGPFGQLFRPDNFIFGQTGAGNNWAK	1	1	Unmodified	2825.3674	0.36739649	2010	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	1	5	0					1												21.917	21.917	3	0.00010151	16661	DP690-5	104.53	90.191			1.0756	1.1531	NaN	1	0	Median	26402000	12077000	14325000	12678	2010	11813	24641	59626;59627;59628;59629;59630;59631	59627		6	9606
SGPGASGGSSGDPDGFFNSK	1	0	Unmodified	1826.7707	0.77073493	1066	P98172	EFNB1	Ephrin-B1	yes	yes	0	0	0	16	0																1	15.521	15.521	2	0.0025356	9127	DP690-16	105.14	81.623			NaN	NaN	NaN	0	0	Median	8738000	0	8738000	12679	1066	11814	24642	59632;59633;59634	59634		3	9606
SGPLPSSSGSSSSSSQLSVATLGR	0	1	Unmodified	2235.0979	0.097882729	1571	Q86UU1	PHLDB1	Pleckstrin homology-like domain family B member 1	yes	yes	0	0	0	10	0										1							16.787	16.787	2	2.6588E-16	12122	DP690-10	230.45	144.23			NaN	NaN	NaN	0	0	Median	0	0	0	12680	1571	11815	24643	59635	59635		1	9606
SGPPAPEEEEEEERQSGNTEQK	1	1	Unmodified	2456.0575	0.057534057	2214	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	1	10	0										1							11.258	11.258	3	2.5275E-15	4006	DP690-10	169.72	159.94			0.6506	0.81963	NaN	1	0	Median	47760000	21975000	25785000	12681	2214	11816	24644	59636;59637;59638;59639;59640	59638		5	9606
SGPVMGGGLPPPPIK	1	0	Unmodified	1402.7643	0.76425675	2053	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	0	0	12	0												1					16.613	16.613	2	0.0020488	11262	DP690-12	89.561	69.274			0.53954	0.63477	NaN	1	0	Median	88170000	47188000	40982000	12682	2053	11817	24645	59641;59642	59642		2	9606
SGPVMGGGLPPPPIK	1	0	Oxidation (M)	1418.7592	0.75917137	2053	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	1	0	10.4	3.2				1								4					14.97	14.97	2	0.0019521	8450	DP690-4	94.616	73.746			0.49346	0.53662	NaN	1	0	Median	72104000	6359000	65745000	12683	2053	11817	24646;24647;24648;24649;24650	59643;59644;59645;59646;59647;59648;59649	59649	2574	7	9606
SGQGAFGNMCR	0	1	Unmodified	1183.4863	0.48626077	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	13	0													2				12.811	12.811	2	0.002732	5664	DP690-13	128.6	91.538			NaN	NaN	NaN	0	0	Median	0	0	0	12684	681	11818	24651;24652	59650;59651	59650		2	9606
SGQGDALASGPVETGPMK	1	0	Oxidation (M)	1716.7989	0.79886394	727	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	1	0	2	0		1															13.101	13.101	2	0.038473	5494	DP690-2	58.079	39.454			0.94266	0.92757	NaN	1	0	Median	1855700	1180600	675110	12685	727	11819	24653	59652;59653	59652	1073	2	9606
SGQPVTADDLGVTGALTVLMK	1	0	Oxidation (M)	2088.0773	0.077270628	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	1	0	11	0											2						20.735	20.735	2	0.0015338	17539	DP690-11	90.654	70.558			0.67331	0.82198	NaN	1	0	Median	25389000	15597000	9792400	12686	1504	11820	24654;24655	59654;59655;59656;59657	59655	2189	4	9606
SGQPVTADDLGVTGALTVLMK	1	0	Unmodified	2072.0824	0.082356006	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											1						22.65	22.65	2	2.5825E-15	20148	DP690-11	176.08	136.65			0.80691	0.98488	NaN	1	0	Median	26148000	14545000	11602000	12687	1504	11820	24656	59658;59659;59660;59661	59660		4	9606
SGQSALYDALFSSQSPK	1	0	Unmodified	1784.8581	0.85809337	808;16	P49792;A6NKT7;Q7Z3J3	RANBP2;RGPD3;RGPD4	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	no	no	0	0	0	9.5	0.5									1	1							19.938	19.938	2	1.3686E-17	16628	DP690-10	214.48	176.95			0.9504	1.1733	NaN	1	0	Median	120340000	65536000	54806000	12688	808;16	11821	24657;24658	59662;59663;59664;59665;59666	59664		5	9606
SGQSSYGQHSSGSSQSSGYGQHGSR	0	1	Unmodified	2499.0395	0.039533002	51	CON__Q5D862;Q5D862	FLG2	Filaggrin-2	yes	no	0	0	0	1	0	1																10.274	10.274	4	0.00057525	2104	DP690-1	95.209	76.674		+	NaN	NaN	NaN	0	0	Median	4143900	4143900	0	12689	51	11822	24659	59667;59668	59668		2	9606
SGQVYSFGCNDEGALGR	0	1	Unmodified	1815.7846	0.78461086	531	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	13	0													1				16.377	16.377	2	1.0683E-17	10702	DP690-13	218.02	200.28			0.78698	0.94145	NaN	1	0	Median	95771000	53925000	41846000	12690	531	11823	24660	59669;59670;59671;59672	59672		4	9606
SGSGTMNLGGSLTR	0	1	Oxidation (M)	1352.6354	0.63542742	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	1	0	11	4.08						1	1	1						1	1	1	12.67	12.67	2	0.0001036	5580	DP690-15	140.24	111.85			0.86106	0.97886	4.0052	6	0	Median	646790000	354340000	292460000	12691	769	11824	24661;24662;24663;24664;24665;24666	59673;59674;59675;59676;59677;59678;59679;59680;59681;59682;59683;59684;59685;59686;59687;59688;59689;59690;59691	59680	1148	19	9606
SGSGTMNLGGSLTR	0	1	Unmodified	1336.6405	0.6405128	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	14	0														1			14.682	14.682	2	0.00016902	8475	DP690-14	179.94	115.67			NaN	NaN	NaN	0	0	Median	138070000	138070000	0	12692	769	11824	24667	59692;59693;59694	59693		3	9606
SGSHTVAVMNVGAPAAGMNAAVR	0	1	2 Oxidation (M)	2199.0525	0.052469636	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	2	0	3	0			1														12.342	12.342	3	0.00028155	5091	DP690-3	96.467	85.543			0.76387	0.8753	NaN	1	0	Median	22855000	13687000	9168400	12693	415	11825	24668	59695;59696;59697;59698	59698	462;463	4	9606
SGSLENVPNVGVNK	1	0	Unmodified	1412.726	0.72595699	868	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	6	0						1											14.557	14.557	2	0.0046904	7605	DP690-6	82.831	58.599			0.83752	0.95887	NaN	1	0	Median	9613600	4827700	4786000	12694	868	11826	24669	59699;59700	59700		2	9606
SGSLGQPSPSAQR	0	1	Unmodified	1270.6266	0.6265773	2162	Q9HBL0	TNS1	Tensin-1	yes	yes	0	0	0	3	0			1														10.528	10.528	2	0.00028841	2797	DP690-3	114.89	39.156			0.82727	0.94492	NaN	1	0	Median	13597000	7116900	6480100	12695	2162	11827	24670	59701;59702	59702		2	9606
SGSLVQFLLYK	1	0	Unmodified	1253.702	0.70197407	157	O15479	MAGEB2	Melanoma-associated antigen B2	yes	yes	0	0	0	14	0														1			21.536	21.536	2	0.017936	17501	DP690-14	100.25	56.476			NaN	NaN	NaN	0	0	Median	6682700	0	6682700	12696	157	11828	24671	59703	59703		1	9606
SGSMDPSGAHPSVR	0	1	Unmodified	1383.6201	0.62011171	1133	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	12.7	0.943												2		1			10.495	10.495	2;3	1.5718E-14	2840	DP690-12	220.29	181.27			0.67198	0.70478	10.494	3	0	Median	1543999999.9999998	933200000	610760000	12697	1133	11829	24672;24673;24674	59704;59705;59706;59707;59708;59709;59710;59711;59712;59713;59714	59710		11	9606
SGSSFVHQASFK	1	0	Unmodified	1280.6149	0.61494998	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9	0									1								12.129	12.129	2	0.0041236	4763	DP690-9	123.62	74.082			NaN	NaN	NaN	0	0	Median	5364400	0	5364400	12698	808	11830	24675	59715;59716	59715		2	9606
SGTAETEPVEQDSSQPSLPLVR	0	1	Unmodified	2326.1288	0.12884851	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	10	0										2							17.014	17.014	2	9.5575E-43	12425	DP690-10	240.46	173.37			NaN	NaN	NaN	0	0	Median	20795000	0	20795000	12699	1167	11831	24676;24677	59717;59718	59717		2	9606
SGTEAVLIAHK	1	0	Unmodified	1124.619	0.61897272	823	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	2	0		1															11.569	11.569	2	0.0025619	3751	DP690-2	93.178	63.103			1.1688	1.1508	NaN	1	0	Median	2271600	1084700	1186900	12700	823	11832	24678	59719;59720	59720		2	9606
SGVEVLFNELEIPVEEYSFGR	0	1	Unmodified	2412.1849	0.18490682	189	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	11	0											1						25.304	25.304	2	3.1247E-06	23336	DP690-11	136.51	105.97			NaN	NaN	NaN	0	0	Median	1154600	1154600	0	12701	189	11833	24679	59721;59722	59722		2	9606
SGVGNIFIK	1	0	Unmodified	933.52837	0.5283668	471	P11940;Q4VXU2;Q96DU9	PABPC1;PABPC1L;PABPC5	Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 5	yes	no	0	0	0	4	0				1													16.334	16.334	2	0.041072	10349	DP690-4	70.256	20.833			1.1383	1.2497	NaN	1	0	Median	13952000	5957800	7994100	12702	471	11834	24680	59723	59723		1	9606
SGVISGGASDLK	1	0	Unmodified	1089.5666	0.5666028	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							12.881	12.881	2	0.043979	6450	DP690-10	87.789	23.582			NaN	NaN	NaN	0	0	Median	102990000	102990000	0	12703	1285	11835	24681	59724	59724		1	9606
SGVSLAALK	1	0	Unmodified	844.50182	0.5018177	504;456	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	0	15	0															1		14.932	14.932	2	0.043181	8654	DP690-15	69.598	34.105			0.99183	1.1255	NaN	1	0	Median	78127000	38470000	39657000	12704	456;504	11836	24682	59725;59726	59725		2	9606
SGVSLAALKK	2	0	Unmodified	972.59678	0.59678072	504;456	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	1	14.3	0.471														2	1		12.466	12.466	2	0.0013124	5307	DP690-15	115.7	68.124			0.97957	1.1223	5.9983	3	0	Median	812520000	391230000	421290000	12705	456;504	11837	24683;24684;24685	59727;59728;59729;59730;59731;59732;59733;59734;59735	59733		9	9606
SGYAIQADEEQLR	0	1	Unmodified	1478.7001	0.70013617	1539	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	12	0												2					15.257	15.257	2	0.026108	9306	DP690-12	94.465	62.247			NaN	NaN	NaN	0	0	Median	0	0	0	12706	1539	11838	24686;24687	59736;59737	59736		2	9606
SGYIPSGHSLGTPEPAPR	0	1	Unmodified	1821.901	0.90096124	2162	Q9HBL0	TNS1	Tensin-1	yes	yes	0	0	0	10	0										1							13.885	13.885	2	0.050499	7876	DP690-10	90.412	41.132			NaN	NaN	NaN	0	0	Median	0	0	0	12707	2162	11839	24688	59738	59738		1	9606
SGYQDMPEYENFR	0	1	Unmodified	1634.6671	0.66712148	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	11	0											2						16.937	16.937	2	0.0025212	12187	DP690-11	125.74	94.913			NaN	NaN	NaN	0	0	Median	0	0	0	12708	1332	11840	24689;24690	59739;59740	59739		2	9606
SGYQDMPEYENFR	0	1	Oxidation (M)	1650.662	0.6620361	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	1	0	3	0			1														15.173	15.173	2	0.0098937	8834	DP690-3	81.709	61.505			0.82029	0.92762	NaN	1	0	Median	9865400	5092600	4772800	12709	1332	11840	24691	59741;59742;59743;59744	59742	2084	4	9606
SHACFQIILR	0	1	Unmodified	1243.6496	0.64956134	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11	0											1						15.575	15.575	2	0.042905	10232	DP690-11	90.709	46.94			NaN	NaN	NaN	0	0	Median	0	0	0	12710	1950	11841	24692	59745	59745		1	9606
SHAHPGCLKEPHHPAQTGHVSHSSQK	2	0	Unmodified	2850.3481	0.34807481	1777	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	1	10	0										2							9.7497	9.7497	6;7	0.00010457	2154	DP690-10	86.182	73.989			0.45328	0.52312	5.1525	2	0	Median	10332000	6800400	3531400	12711	1777	11842	24693;24694	59746;59747;59748;59749;59750	59747		5	9606
SHATTEPEQTEPEQREPTPYPDER	0	2	Unmodified	2823.2584	0.25835913	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	1	9.5	0.5									2	2							11.723	11.723	3;4	0.00029558	4216	DP690-9	94.234	74.337			0.50763	0.5768	4.2116	2	0	Median	103930000	61144000	42788000	12712	1048	11843	24695;24696;24697;24698	59751;59752;59753;59754;59755;59756;59757;59758	59754		8	9606
SHDPEEAIRHDVIVTIITAAK	1	1	Unmodified	2314.2281	0.22810904	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	1	10	0										1							19.589	19.589	4	0.00084118	16206	DP690-10	74.505	63.205			0.86044	1.0542	NaN	1	0	Median	114870000	61561000	53307000	12713	1377	11844	24699	59759;59760;59761;59762	59759		4	9606
SHEGGITKPYTCSVCGK	2	0	Unmodified	1879.8557	0.85566731	1246	Q14119	VEZF1	Vascular endothelial zinc finger 1	yes	yes	0	0	1	12	0												1					10.682	10.682	3	0.0015017	3076	DP690-12	75.445	54.173			0.68283	0.78586	NaN	1	0	Median	51037000	33384000	17653000	12714	1246	11845	24700	59763;59764	59763		2	9606
SHFASSHALICISHWILGIGDR	0	1	Unmodified	2476.2434	0.24338195	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								20.805	20.805	4	1.0645E-19	15717	DP690-9	183.22	163.8			0.85938	1.0743	NaN	1	0	Median	10169000	5107800	5060800	12715	1046	11846	24701	59765	59765		1	9606
SHFEQWGTLTDCVVMR	0	1	Unmodified	1964.8873	0.88730179	437	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	14	0														1			18.203	18.203	2	7.7391E-09	13211	DP690-14	184.98	184.98			0.78596	0.95773	NaN	1	0	Median	18536000	10472000	8064400	12716	437	11847	24702	59766;59767	59766		2	9606
SHFEQWGTLTDCVVMRDPNTK	1	1	Oxidation (M)	2536.1475	0.14749223	437	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	1	14	0														1			16.244	16.244	3	1.2679E-06	10611	DP690-14	129.75	118.92			0.85953	1.0552	NaN	1	0	Median	54891000	27522000	27369000	12717	437	11848	24703	59768;59769	59768	507	2	9606
SHGFAAEFK	1	0	Unmodified	992.47158	0.4715802	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	10.3	0.943									1		2						12.237	12.237	2	0.00058778	5226	DP690-11	146.79	67.073			0.83895	0.85159	11.819	3	0	Median	1611299999.9999998	860160000	751180000	12718	897	11849	24704;24705;24706	59770;59771;59772;59773;59774;59775;59776;59777	59771		8	9606
SHGLFGLNENQLR	0	1	Unmodified	1483.7532	0.75317479	1867	Q96H79	ZC3HAV1L	Zinc finger CCCH-type antiviral protein 1-like	yes	yes	0	0	0	9.4	3.77						2	1							2			16.052	16.052	2;3	4.4843E-05	9370	DP690-6	140.78	104.46			0.84573	0.92754	1.7765	3	0	Plateau	101500000	68914000	32588000	12719	1867	11850	24707;24708;24709;24710;24711	59778;59779;59780;59781;59782;59783;59784;59785;59786;59787	59784		10	9606
SHGNEVSESAVTPEER	0	1	Unmodified	1726.7758	0.77582031	2549				yes	yes	0	0	0	9	0									1								10.37	10.37	3	0.083271	2626	DP690-9	34.82	24.101	+		2.6215	3.2827	NaN	1	0	Median	5148300	1317500	3830800	12720	2549	11851	24712	59788	59788		1	9606
SHGVLGLYR	0	1	Unmodified	1000.5454	0.54541385	869	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	14.5	0.5														1	1		13.524	13.524	2	0.0014839	6785	DP690-15	120.62	95.727			0.76456	0.85149	6.9301	2	0	Median	462370000	258360000	204020000	12721	869	11852	24713;24714	59789;59790;59791;59792;59793;59794	59794		6	9606
SHISDQSPLSSK	1	0	Unmodified	1284.631	0.63099397	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	11	0											1						10.777	10.777	2	6.469200000000001E-25	3229	DP690-11	218.15	146.46			NaN	NaN	NaN	0	0	Median	44163000	0	44163000	12722	723	11853	24715	59795;59796	59795		2	9606
SHLLNCCPHDVLSGTR	0	1	Unmodified	1864.8672	0.86723505	2457	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	13	0													1				13.209	13.209	3	8.0869E-07	6259	DP690-13	140.49	124.6			0.78128	0.95423	NaN	1	0	Median	37916000	21576000	16340000	12723	2457	11854	24716	59797;59798;59799	59797		3	9606
SHLMSLYSACSSEVPHGPVDQK	1	0	Oxidation (M)	2444.11	0.11004409	341	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	1	0	15	0															1		14.089	14.089	3	2.2164E-15	7599	DP690-15	171.13	156.35			0.86205	1.0179	NaN	1	0	Median	29402000	18029000	11373000	12724	341	11855	24717	59800;59801;59802;59803	59803	351	4	9606
SHLPYDVTPEQALSHPEVQR	0	1	Unmodified	2302.1342	0.13420866	1575	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	0	10	0										1							15.425	15.425	4	0.03281	10189	DP690-10	58.123	44.532			0.8199	1.0245	NaN	1	0	Median	64155000	41220000	22935000	12725	1575	11856	24718	59804	59804		0	9606
SHNASLHPTPEQCEAVSK	1	0	Unmodified	1990.9167	0.91668766	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								10.34	10.34	3	2.3426E-12	2559	DP690-9	177.44	155.9			0.65274	0.83134	NaN	1	0	Median	16586000	9565800	7020100	12726	1453	11857	24719	59805;59806;59807;59808;59809;59810	59806		6	9606
SHPEVIGVFGESVK	1	0	Unmodified	1483.7671	0.76709352	2023	Q9BVV7	TIMM21	Mitochondrial import inner membrane translocase subunit Tim21	yes	yes	0	0	0	16	0																1	15.766	15.766	2	0.0015982	9548	DP690-16	98.182	81.016			0.71345	0.82276	NaN	1	0	Median	31318000	18012000	13306000	12727	2023	11858	24720	59811;59812;59813;59814;59815	59812		5	9606
SHPLDPIDTVDFER	0	1	Unmodified	1639.7842	0.78420015	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	7	4			1								1						17.219	17.219	3	1.0451E-05	11596	DP690-3	131.32	104.7			1.2293	1.4448	57.535	2	0	Median	91180000	42800000	48380000	12728	770	11859	24721;24722	59816;59817;59818	59817		2	9606
SHQSSYGQHGSGSSQSSGYGQHGSSSGQTSGFGQHR	0	1	Unmodified	3622.5191	0.51905213	51	CON__Q5D862;Q5D862	FLG2	Filaggrin-2	yes	no	0	0	0	16	0																1	10.202	10.202	5	0.023245	2622	DP690-16	49.432	36.697		+	NaN	NaN	NaN	0	0	Median	2020600	2020600	0	12729	51	11860	24723	59819;59820	59820		2	9606
SHQTGIQASEDVK	1	0	Acetyl (Protein N-term)	1440.6845	0.68448611	1159	Q12792	TWF1	Twinfilin-1	yes	yes	1	0	0	6	0						1											11.732	11.732	2	0.0026376	4288	DP690-6	93.766	93.766			0.9647	1.0912	NaN	1	0	Median	5675000	3162000	2513000	12730	1159	11861	24724	59821;59822	59821		2	9606
SHQVLAQLLDTLLAIGTK	1	0	Unmodified	1920.1044	0.10441208	1874	Q96HW7	INTS4	Integrator complex subunit 4	yes	yes	0	0	0	11	0											1						25.513	25.513	3	0.033982	23448	DP690-11	69.986	47.667			NaN	NaN	NaN	0	0	Median	846350	846350	0	12731	1874	11862	24725	59823	59823		1	9606
SHRVPLDVACAR	0	2	Unmodified	1379.7092	0.70920149	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							10.928	10.928	3	0.00018867	3671	DP690-10	118.76	118.76			0.76853	0.87324	9.8778	2	0	Median	150030000	83077000	66955000	12732	1319	11863	24726;24727	59824;59825;59826;59827;59828;59829;59830;59831;59832	59824		9	9606
SHSAPSEVGFSDAR	0	1	Unmodified	1445.6535	0.65352033	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	11	0											3						11.784	11.784	2;3	1.44E-05	4655	DP690-11	109.6	90.143			0.91235	1.0983	NaN	1	0	Median	92857000	51320000	41538000	12733	1573	11864	24728;24729;24730	59833;59834;59835;59836;59837;59838;59839;59840	59833		8	9606
SHSGNISCMDFSSNGK	1	0	Oxidation (M)	1742.6988	0.69883232	2489	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	1	0	13	0													1				10.834	10.834	3	0.010802	3176	DP690-13	87.419	74.541			NaN	NaN	NaN	0	0	Median	14655000	14655000	0	12734	2489	11865	24731	59841;59842	59841	2928	2	9606
SHSIFLINVK	1	0	Unmodified	1156.6604	0.66044361	648	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	3	0			1														16.377	16.377	2	0.052173	10506	DP690-3	63.534	53.828			1.1166	1.2013	NaN	1	0	Median	17373000	7962400	9410600	12735	648	11866	24732	59843	59843		1	9606
SHSSPASLQLGTGAGAAGSPAQQHAHLR	0	1	Unmodified	2693.3382	0.33822163	2078	Q9GZV5	WWTR1	WW domain-containing transcription regulator protein 1	yes	yes	0	0	0	13	0													1				12.257	12.257	4	4.09E-18	4947	DP690-13	172.77	152.12			0.78979	0.94638	NaN	1	0	Median	92802000	49165000	43637000	12736	2078	11867	24733	59844;59845;59846;59847	59846		4	9606
SHSVFQLQISGEHSSR	0	1	Unmodified	1797.8758	0.87580912	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11	0											1						13.788	13.788	3	9.9757E-05	7530	DP690-11	112.12	94.417			0.70549	0.84944	NaN	1	0	Median	78164000	43227000	34936000	12737	2024	11868	24734	59848;59849;59850	59848		3	9606
SHTEEDCTEELFDFLHAR	0	1	Unmodified	2234.9539	0.95386103	411	P07919	UQCRH	Cytochrome b-c1 complex subunit 6, mitochondrial	yes	yes	0	0	0	16	0																1	19.638	19.638	3	0.013156	14309	DP690-16	89.502	73.559			0.81524	0.9541	NaN	1	0	Median	5825300	3324700	2500700	12738	411	11869	24735	59851	59851		0	9606
SHTFPELAYR	0	1	Unmodified	1219.5986	0.59857163	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	8.2	3.6				2					1			2					14.548	14.548	2;3	1.9401E-05	8413	DP690-12	155.84	107.95			0.87944	0.90029	21.032	5	0	Median	1977699999.9999998	1053299999.9999999	924430000	12739	2210	11870	24736;24737;24738;24739;24740	59852;59853;59854;59855;59856;59857;59858;59859;59860;59861;59862;59863	59856		12	9606
SHTILLVQPTK	1	0	Acetyl (Protein N-term)	1277.7343	0.73433683	1061	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	1	0	0	12	4								1								1	16.212	16.212	2	2.6234E-06	10099	DP690-16	221.68	203.37			0.80086	0.88564	3.0503	2	0	Median	190930000	105610000	85320000	12740	1061	11871	24741;24742	59864;59865;59866;59867;59868;59869;59870;59871	59867		8	9606
SHVAVENALGLDQQFAGLDLNSSDNQSGGSTASK	1	0	Acetyl (Protein N-term)	3458.6186	0.61859797	96	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	1	0	0	11	0											1						21.273	21.273	3	1.8246E-11	18326	DP690-11	133.23	133.23			0.95034	1.1631	NaN	1	0	Median	22785000	10870000	11915000	12741	96	11872	24743	59872;59873;59874	59873		3	9606
SHVEDGDIAGAPASSPEAPPAEQDPVQLK	1	0	Unmodified	2911.3836	0.38355964	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	10.5	0.5										1	1						15.491	15.491	3	5.3424E-16	10096	DP690-11	145.16	120.7			NaN	NaN	NaN	0	0	Median	50329000	50329000	0	12742	2303	11873	24744;24745	59875;59876;59877;59878;59879;59880	59879		6	9606
SHVYSLEGQDCK	1	0	Unmodified	1421.6245	0.62452839	2252	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	yes	yes	0	0	0	11	0											5						11.224	11.224	2	0.0011702	3872	DP690-11	128.51	96.479			NaN	NaN	NaN	0	0	Median	0	0	0	12743	2252	11874	24746;24747;24748;24749;24750	59881;59882;59883;59884;59885	59883		5	9606
SHYFEGVLK	1	0	Unmodified	1078.5447	0.54474515	887	P54619	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1	yes	yes	0	0	0	14	0														1			14.093	14.093	2	0.035873	7744	DP690-14	71.877	36.44			0.97759	1.1827	NaN	1	0	Median	77403000	39360000	38043000	12744	887	11875	24751	59886;59887	59887		2	9606
SIAADHKDLIHDVSFDFHGR	1	1	Unmodified	2279.1083	0.10832826	1840	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	1	14	0														1			15.633	15.633	5	0.00011007	9733	DP690-14	102.89	91.595			0.80877	0.9032	NaN	1	0	Median	217330000	111730000	105600000	12745	1840	11876	24752	59888;59889;59890;59891	59888		4	9606
SIADSEESEAYK	1	0	Unmodified	1327.578	0.57795535	2043	Q9BY42	RTFDC1	Protein RTF2 homolog	yes	yes	0	0	0	8	3.46						3								1			12.723	12.723	2	8.1106E-05	5727	DP690-14	125.75	61.931			0.85906	1.0081	21.739	2	0	Median	73412000	37483000	35930000	12746	2043	11877	24753;24754;24755;24756	59892;59893;59894;59895;59896;59897;59898;59899	59894		8	9606
SIAFHSAVSLDPIK	1	0	Unmodified	1483.8035	0.80347903	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	14	0														1			16.726	16.726	3	0.00065968	11291	DP690-14	100.73	77.584			0.97049	1.1543	NaN	1	0	Median	137110000	74211000	62903000	12747	2474	11878	24757	59900;59901;59902	59901		3	9606
SIAIPAISSGVFGFPLGR	0	1	Unmodified	1787.9934	0.99340506	1391	Q460N5	PARP14	Poly [ADP-ribose] polymerase 14	yes	yes	0	0	0	10	0										1							23.466	23.466	2	2.7277E-08	21242	DP690-10	173.19	125.14			NaN	NaN	NaN	0	0	Median	10160000	10160000	0	12748	1391	11879	24758	59903;59904;59905	59903		3	9606
SIAPSIFGGTDMK	1	0	Unmodified	1322.654	0.6540376	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	11	0											1						18.034	18.034	2	0.042447	13759	DP690-11	90.653	55.932			NaN	NaN	NaN	0	0	Median	0	0	0	12749	652	11880	24759	59906	59906		1	9606
SIAPSIFGGTDMKK	2	0	Oxidation (M)	1466.7439	0.74391524	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	1	7	4			1								1						14.698	14.698	3	0.0049524	8924	DP690-11	69.345	48.285			0.80002	0.87553	3.6442	2	0	Median	281880000	152250000	129640000	12750	652	11881	24760;24761	59907;59908;59909;59910;59911;59912;59913;59914	59909	918	8	9606
SIAPSIFGGTDMKK	2	0	Unmodified	1450.749	0.74900062	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	11	0											1						15.6	15.6	3	0.0039519	10260	DP690-11	72.815	53.849			0.7821	0.877	NaN	1	0	Median	205010000	107460000	97552000	12751	652	11881	24762	59915;59916;59917	59915		3	9606
SIATDVLLGLLK	1	0	Unmodified	1241.7595	0.75948895	1532	Q7L7V1	DHX32	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32	yes	yes	0	0	0	11	0											2						24.249	24.249	2	0.042476	22051	DP690-11	90.108	66.078			NaN	NaN	NaN	0	0	Median	3279100	3279100	0	12752	1532	11882	24763;24764	59918;59919	59919		2	9606
SIATLAITTLLK	1	0	Unmodified	1243.7751	0.77513901	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	no	no	0	0	0	7.67	3.4			1						1		1						22.733	22.733	2	8.7991E-05	20190	DP690-11	131.52	131.52			1.3615	1.6605	112.98	3	0	Median	51506000	15503000	36003000	12753	2515	11883	24765;24766;24767	59920;59921;59922;59923;59924;59925;59926;59927;59928	59920		9	9606
SICEVLDLER	0	1	Unmodified	1232.6071	0.60708741	674	P35659	DEK	Protein DEK	yes	yes	0	0	0	13	0													1				18.534	18.534	2	9.2244E-05	13488	DP690-13	151.44	110.01			0.82095	0.99587	NaN	1	0	Median	55704000	29813000	25891000	12754	674	11884	24768	59929;59930;59931;59932	59929		4	9606
SIDGTADDEDEGVPTDQAIR	0	1	Unmodified	2102.924	0.92400069	2214	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	10	0										3							15.464	15.464	2	5.3616E-51	10228	DP690-10	255.08	209.19			NaN	NaN	NaN	0	0	Median	15302000	0	15302000	12755	2214	11885	24769;24770;24771	59933;59934;59935	59933		3	9606
SIDQFANLVLHQTVER	0	1	Unmodified	1868.9745	0.97446054	138	O15116	LSM1	U6 snRNA-associated Sm-like protein LSm1	yes	yes	0	0	0	16	0																1	20.763	20.763	3	0.0015314	15539	DP690-16	75.463	55.909			1.0399	1.2213	NaN	1	0	Median	3252600	1323000	1929600	12756	138	11886	24772	59936;59937;59938	59937		3	9606
SIDSFGQVSHPK	1	0	Unmodified	1300.6412	0.64116473	1588	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	12	0												2					12.536	12.536	2;3	0.00038344	5578	DP690-12	115.78	91.006			0.84223	1.0042	16.175	2	0	Median	113000000	62417000	50581000	12757	1588	11887	24773;24774	59939;59940;59941;59942;59943;59944	59943		6	9606
SIEALLEAGQAR	0	1	Unmodified	1256.6725	0.67246486	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	10.5	1.12									1	1	1	1					18.546	18.546	2	6.3922E-05	14689	DP690-10	126.31	87.537			0.78033	0.97509	28.396	3	0	Median	112510000	68023000	44487000	12758	2303	11888	24775;24776;24777;24778	59945;59946;59947;59948;59949	59945		5	9606
SIEEACFTLQYLNK	1	0	Unmodified	1714.8236	0.82362212	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	10	0										1							19.559	19.559	2	0.00033455	16020	DP690-10	110.08	85.285			1.2122	1.4878	NaN	1	0	Median	32808000	14489000	18319000	12759	763	11889	24779	59950	59950		1	9606
SIEEQLGTEIKPIPSNIDK	2	0	Unmodified	2110.1158	0.11576462	589	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	1	12	0												1					17.392	17.392	2	0.031683	12351	DP690-12	122.1	81.62			NaN	NaN	NaN	0	0	Median	0	0	0	12760	589	11890	24780	59951	59951		1	9606
SIEGTADDEEEGVSPDTAIR	0	1	Unmodified	2089.9288	0.92875172	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10	0										1							15.743	15.743	2	2.6203000000000002E-30	10611	DP690-10	246.86	210.18			NaN	NaN	NaN	0	0	Median	0	0	0	12761	1377	11891	24781	59952	59952		1	9606
SIEIPRPVDGVEVPGCGK	1	1	Unmodified	1907.9775	0.977497	592	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	1	12	0												1					16.732	16.732	3	0.00035032	11365	DP690-12	92.096	68.055			0.61777	0.69033	NaN	1	0	Median	182860000	103940000	78918000	12762	592	11892	24782	59953;59954	59954		2	9606
SIESTLDDLFR	0	1	Unmodified	1294.6405	0.64049603	88	O00468	AGRN	Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment	yes	yes	0	0	0	9	0									1								22.996	22.996	2	0.006233	18404	DP690-9	113.71	59.549			NaN	NaN	NaN	0	0	Median	965140	965140	0	12763	88	11893	24783	59955	59955		1	9606
SIEYLEEDAQK	1	0	Unmodified	1323.6194	0.61942623	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	9	0									1								15.091	15.091	2	0.017834	8613	DP690-9	101.65	40.086			NaN	NaN	NaN	0	0	Median	0	0	0	12764	1891	11894	24784	59956	59956		1	9606
SIFASPESVTGK	1	0	Unmodified	1221.6241	0.62411768	281	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	0	11	4							1								1		15.875	15.875	2	0.00024173	9936	DP690-15	148.91	107.83			0.9451	1.0258	10.149	2	0	Median	245640000	123980000	121660000	12765	281	11895	24785;24786	59957;59958;59959;59960;59961	59960		5	9606
SIFGEDALANVSIEKPIHQGPDAAVTGHIR	1	1	Unmodified	3141.6207	0.62071064	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	7	4			1								1						17.482	17.482	4;5	9.4469E-05	11992	DP690-3	87.352	63.435			0.82115	0.98194	NaN	1	0	Median	97417000	44080000	53337000	12766	877	11896	24787;24788	59962;59963;59964	59963		2	9606
SIFSLDTPEQYQEAFQK	1	0	Unmodified	2029.9633	0.96328673	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10.5	0.5										1	1						20.661	20.661	2	1.846E-47	17634	DP690-10	249.69	204.03			NaN	NaN	NaN	0	0	Median	39681000	39681000	0	12767	1724	11897	24789;24790	59965;59966	59965		2	9606
SIGDIFLK	1	0	Unmodified	891.50657	0.50656873	2137	Q9H8V3	ECT2	Protein ECT2	yes	yes	0	0	0	12	0												1					21.95	21.95	1	0.044842	18215	DP690-12	117.93	19.476			0.77838	0.93876	NaN	1	0	Median	16082000	8940800	7141600	12768	2137	11898	24791	59967	59967		0	9606
SIGEYDVLR	0	1	Unmodified	1050.5346	0.53457439	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7	3.56		1							1	1							16.333	16.333	2	0.0013409	10155	DP690-9	122.19	59.723			0.88179	0.95121	23.207	3	0	Plateau	995160000	518730000	476430000	12769	1046	11899	24792;24793;24794	59968;59969;59970;59971;59972;59973;59974;59975;59976;59977	59974		10	9606
SIGTANRPMGAGEALR	0	2	Unmodified	1599.8151	0.81512312	1170	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	1	11	0											1						12.563	12.563	3	0.0016688	5799	DP690-11	76.01	41.831			0.7542	0.92972	NaN	1	0	Median	84856000	48094000	36762000	12770	1170	11900	24795	59978;59979	59978		2	9606
SIGVPIK	1	0	Acetyl (Protein N-term)	754.45889	0.45889025	981	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	1	0	0	16	0																1	17.572	17.572	1	0.011527	11657	DP690-16	90.986	46.375			0.7963	0.87662	NaN	1	0	Median	93449000	52268000	41181000	12771	981	11901	24796	59980	59980		0	9606
SIGYDDTDESHCAEHIESR	0	1	Unmodified	2219.9026	0.90255374	1940	Q99541	PLIN2	Perilipin-2	yes	yes	0	0	0	5	0					1												12.811	12.811	4	0.0023335	5410	DP690-5	68.525	66.907			1.0168	1.0686	NaN	1	0	Median	22134000	10167000	11967000	12772	1940	11902	24797	59981	59981		1	9606
SIIEGPIIK	1	0	Unmodified	968.59063	0.59063271	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							16.266	16.266	2	0.048366	11393	DP690-10	67.981	43.058			0.77464	0.93829	NaN	1	0	Median	193550000	108990000	84558000	12773	13	11903	24798	59982;59983	59983		2	9606
SIILHLISQLK	1	0	Unmodified	1263.7915	0.79145778	2037	Q9BXB5	OSBPL10	Oxysterol-binding protein-related protein 10	yes	yes	0	0	0	11	0											1						19.975	19.975	3	0.0036865	16468	DP690-11	76.927	50.882			0.70663	0.87247	NaN	1	0	Median	13786000	9105200	4681000	12774	2037	11904	24799	59984;59985;59986	59984		3	9606
SIITYVSSLYDAMPR	0	1	Oxidation (M)	1730.8549	0.85492225	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	10.7	1.39									2	1	2	1	1				21.811	21.811	2	2.3136E-06	16904	DP690-9	179.94	145.05			0.74775	0.8848	32.094	3	0	Plateau	324080000	183310000	140770000	12775	1319	11905	24800;24801;24802;24803;24804;24805;24806	59987;59988;59989;59990;59991;59992;59993;59994;59995;59996;59997;59998;59999;60000;60001;60002;60003;60004;60005;60006;60007	60004	2034	21	9606
SIITYVSSLYDAMPR	0	1	Unmodified	1714.86	0.86000763	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.816									1	1	1						23.793	23.793	2	1.5594E-14	21646	DP690-10	221.6	188.54			0.76147	0.93811	1.3698	3	0	Median	65175000	36908000	28267000	12776	1319	11905	24807;24808;24809	60008;60009;60010;60011;60012;60013;60014;60015;60016;60017;60018;60019;60020;60021;60022;60023;60024	60010		17	9606
SIITYVVTYYHYFSK	1	0	Unmodified	1882.9505	0.9505372	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							23.031	23.031	3	0.0014585	20744	DP690-10	80.102	56.061			0.67188	0.81451	NaN	1	0	Median	12461000	7295700	5164900	12777	1080	11906	24810	60025;60026;60027	60026		3	9606
SIKDTICNQDER	1	1	Unmodified	1477.6831	0.6831059	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	1	12.5	2.18									1				2		1		11.722	11.722	2;3	3.9474E-05	4267	DP690-13	144.57	121.43			0.9422	1.1029	11.198	4	0	Median	379770000	210350000	169420000	12778	2395	11907	24811;24812;24813;24814	60028;60029;60030;60031;60032;60033;60034;60035;60036;60037;60038	60028		11	9606
SILEQLAEK	1	0	Unmodified	1029.5706	0.57062555	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															17.368	17.368	2	0.00054965	10554	DP690-2	148.52	54.925			1.3603	1.3766	NaN	1	0	Median	24936000	10565000	14371000	12779	602	11908	24815	60039;60040	60039		2	9606
SILFVPTSAPR	0	1	Unmodified	1186.671	0.67100829	490	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	3	0			1														17.837	17.837	2	0.031495	12428	DP690-3	91.265	37.49			NaN	NaN	NaN	0	0	Median	8938600	0	8938600	12780	490	11909	24816	60041	60041		1	9606
SILLATDVASR	0	1	Unmodified	1144.6452	0.64518747	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	13	0													1				16.433	16.433	2	7.6932E-05	10700	DP690-13	174.02	116.98			0.84522	0.9546	NaN	1	0	Median	286520000	145700000	140820000	12781	2090	11910	24817	60042;60043;60044;60045;60046	60045		5	9606
SILLSVPLLVVDNK	1	0	Unmodified	1508.9178	0.91778051	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	6.5	3.5			1							1							22.74	22.74	2	7.4932E-05	18286	DP690-3	155.33	150.44			1.2756	1.4579	51.502	2	0	Median	37485000	16617000	20868000	12782	878	11911	24818;24819	60047;60048;60049;60050;60051;60052;60053;60054	60052		8	9606
SILNADVAELLVVEKDTR	1	1	Unmodified	1984.0841	0.084070565	1748	Q8WVM0	TFB1M	Dimethyladenosine transferase 1, mitochondrial	yes	yes	0	0	1	14	0														1			20.893	20.893	3	0.00026041	16800	DP690-14	97.095	84.058			1.0035	1.2621	NaN	1	0	Median	27296000	12471000	14825000	12783	1748	11912	24820	60055;60056;60057	60056		3	9606
SILTIPWVELGGK	1	0	Unmodified	1411.8075	0.80750177	2037	Q9BXB5	OSBPL10	Oxysterol-binding protein-related protein 10	yes	yes	0	0	0	11	0											2						22.647	22.647	2	4.2871E-05	20040	DP690-11	132.25	108.16			0.73174	0.89446	NaN	1	0	Median	23758000	16346000	7412400	12784	2037	11913	24821;24822	60058;60059;60060;60061	60058		4	9606
SILTLSHEPK	1	0	Unmodified	1123.6237	0.62372375	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															13.148	13.148	2	0.053225	5567	DP690-2	63.184	18.162			1.1658	1.1688	NaN	1	0	Median	4763100	2324900	2438200	12785	1555	11914	24823	60062;60063	60063		2	9606
SILTQIFGAR	0	1	Unmodified	1104.6291	0.62914348	2387	Q9ULH0	KIDINS220	Kinase D-interacting substrate of 220 kDa	yes	yes	0	0	0	9	0									1								21.868	21.868	2	0.0017924	17057	DP690-9	103.56	62.336			0.82059	1.027	NaN	1	0	Median	4612700	2593700	2019100	12786	2387	11915	24824	60064;60065	60064		2	9606
SINDPEHPLTLEELNVVEQVR	0	1	Unmodified	2430.2391	0.23906766	2467	Q9Y3D0	FAM96B	Mitotic spindle-associated MMXD complex subunit MIP18	yes	yes	0	0	0	8	0								1									19.654	19.654	3	1.0229E-06	13255	DP690-8	131.56	131.56			0.95265	1.136	NaN	1	0	Median	4307200	2352800	1954400	12787	2467	11916	24825	60066;60067;60068;60069;60070	60068		5	9606
SINPDEAVAYGAAVQAAILMGDK	1	0	Oxidation (M)	2319.1417	0.1416618	449	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	8	4				1								1					23.044	23.044	2	0.0011692	17880	DP690-4	102.36	86.138			1.5952	1.6992	NaN	1	0	Median	4205900	584720	3621200	12788	449	11917	24826;24827	60071;60072;60073;60074;60075;60076;60077;60078;60079;60080	60074	517	10	9606
SINPDEAVAYGAAVQAAILSGDK	1	0	Unmodified	2259.1383	0.13829098	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	9.5	3.2				1							2	1					23.162	23.162	2	1.0554E-19	19628	DP690-12	186.17	174.91			0.87244	1.0538	40.881	3	0	Median	30150000	15211000	14938000	12789	463	11918	24828;24829;24830;24831	60081;60082;60083;60084;60085;60086;60087;60088;60089;60090;60091;60092;60093	60086		13	9606
SINPLGGFVHYGEVTNDFVMLK	1	0	Oxidation (M)	2452.2097	0.20968178	698	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	0	5	0					1												21.051	21.051	3	0.0039897	15681	DP690-5	59.163	59.163			0.87115	0.87224	NaN	1	0	Median	12680000	6884900	5795100	12790	698	11919	24832	60094;60095	60095	1022	2	9606
SINQPVAFVR	0	1	Unmodified	1129.6244	0.62439245	2075	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	yes	yes	0	0	0	16	0																1	15.34	15.34	2	0.0019524	9048	DP690-16	102.51	75.724			0.7222	0.80383	NaN	1	0	Median	73927000	42868000	31059000	12791	2075	11920	24833	60096;60097	60097		2	9606
SINQQSGAHVELQR	0	1	Unmodified	1565.791	0.79101686	1875	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	10.5	3.84				1								2		1			11.131	11.131	2;3	5.5809E-09	3689	DP690-12	186.76	116.73			0.98537	0.83246	24.036	4	0	Linear	296710000	153520000	143200000	12792	1875	11921	24834;24835;24836;24837	60098;60099;60100;60101;60102;60103;60104;60105;60106;60107;60108	60103		11	9606
SIPAYLAETLYYAMK	1	0	Oxidation (M)	1748.8695	0.86950968	427	P08758	ANXA5	Annexin A5	yes	yes	0	1	0	7	0							1										21.89	21.89	2	0.00088051	16823	DP690-7	106.67	75.939			1.138	1.2258	NaN	1	0	Median	5199900	2254600	2945300	12793	427	11922	24838	60109;60110;60111	60111	492	3	9606
SIPLDEGEDEAQR	0	1	Unmodified	1457.6634	0.66341631	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								13.995	13.995	2	1.3709E-08	7193	DP690-9	208.63	163.99			0.66666	0.76205	11.703	2	0	Median	22302000	12910000	9392600	12794	1264	11923	24839;24840	60112;60113;60114;60115;60116;60117	60116		6	9606
SIPMTVDFIR	0	1	Oxidation (M)	1193.6114	0.6114445	356	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	1	0	7	0							1										17.651	17.651	2	0.023611	11760	DP690-7	77.732	35.133			0.47155	0.52602	NaN	1	0	Median	39414000	25139000	14276000	12795	356	11924	24841	60118	60118	366	1	9606
SIPNLAEVK	1	0	Unmodified	969.5495	0.54949617	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	2.5	0.5		1	1														15.352	15.352	2	0.0046376	9311	DP690-3	101.25	55.917			0.71317	0.7126	0.6771	2	0	Median	443710000	256350000	187360000	12796	2316	11925	24842;24843	60119;60120;60121;60122;60123;60124;60125;60126;60127;60128	60128		10	9606
SIPNLAEVKK	2	0	Unmodified	1097.6445	0.64445919	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	1	3	0			1														13.064	13.064	2	0.028246	6041	DP690-3	79.489	51.408			0.61461	0.65723	NaN	1	0	Median	64425000	37367000	27058000	12797	2316	11926	24844	60129;60130	60130		2	9606
SIPPEGLAQSELMR	0	1	Oxidation (M)	1542.7712	0.77119262	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	0	12	0												1					15.985	15.985	2	0.057261	10321	DP690-12	62.338	14.445			0.81388	0.90735	NaN	1	0	Median	253590000	133290000	120300000	12798	2434	11927	24845	60131;60132	60132		2	9606
SIPPEGLAQSELMR	0	1	Unmodified	1526.7763	0.776278	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	12	0												1					17.271	17.271	2	3.3267E-05	12188	DP690-12	146.71	121.86			0.76799	0.87284	NaN	1	0	Median	173000000	99171000	73829000	12799	2434	11927	24846	60133;60134;60135;60136;60137	60134		5	9606
SIQADGLVWGSSK	1	0	Unmodified	1346.683	0.68302954	575	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	15	0															1		17.241	17.241	2	6.9134E-05	11699	DP690-15	133.42	106.53			0.90184	1.0564	NaN	1	0	Median	35964000	17096000	18868000	12800	575	11928	24847	60138;60139;60140;60141	60138		4	9606
SIQEELQQLR	0	1	Unmodified	1242.6568	0.65681479	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8	3.54		1							1	1	1						17.75	17.75	2	2.3779E-05	13449	DP690-10	177.36	92.2			0.75475	0.83601	10.875	4	0	Median	856530000	481140000	375390000	12801	1319	11929	24848;24849;24850;24851	60142;60143;60144;60145;60146;60147;60148;60149;60150;60151;60152	60143		11	9606
SIQEIQELDKDDESLR	1	1	Unmodified	1916.9327	0.93271488	855	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	1	7	0							1										16.206	16.206	3	0.00041089	9818	DP690-7	97.767	86.659			0.93245	0.98278	NaN	1	0	Median	17355000	9211800	8143400	12802	855	11930	24852	60153;60154	60153		2	9606
SIQFVDWCPTGFK	1	0	Unmodified	1583.7442	0.74424959	1032;1033	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	0	8.2	3.66				1	1		1					1	1				20.513	20.513	2	2.5208E-05	14898	DP690-5	178.46	138.52			1.0282	0.95551	15.628	5	0	Linear	2058399999.9999998	1051699999.9999999	1006699999.9999999	12803	1032;1033	11931	24853;24854;24855;24856;24857	60155;60156;60157;60158;60159;60160;60161;60162;60163;60164;60165;60166;60167;60168;60169;60170;60171;60172;60173;60174	60168		20	9606
SIQLDGLVWGASK	1	0	Unmodified	1372.7351	0.73506511	617	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	14	0														1			20.165	20.165	2	4.6936E-05	15739	DP690-14	130.44	102.57			0.97943	1.1179	NaN	1	0	Median	302600000	153310000	149290000	12804	617	11932	24858	60175;60176	60176		2	9606
SIQNSLLGHSSVEDAR	0	1	Unmodified	1711.8489	0.84892567	1821	Q96AZ6	ISG20	Interferon-stimulated gene 20 kDa protein	yes	yes	0	0	0	16	0																1	14.451	14.451	3	0.00074174	7878	DP690-16	86.777	61.723			0.87924	1.0121	NaN	1	0	Median	29356000	15126000	14230000	12805	1821	11933	24859	60177;60178	60178		2	9606
SIRPDNMSEYSK	1	1	Unmodified	1425.6558	0.65582851	1222;1788	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	1	12	0												1					11.943	11.943	3	0.016782	4711	DP690-12	63.181	14.714			0.82881	0.88924	NaN	1	0	Median	305640000	165390000	140250000	12806	1222;1788	11934	24860	60179;60180;60181	60180		3	9606
SISADDDLQESSR	0	1	Unmodified	1421.627	0.62703081	528	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	13	0													1				12.929	12.929	2	1.8402E-05	5838	DP690-13	181.53	152.36			0.75669	0.92134	NaN	1	0	Median	44807000	26097000	18709000	12807	528	11935	24861	60182;60183;60184;60185	60182		4	9606
SISALGGR	0	1	Acetyl (Protein N-term)	801.43447	0.43446642	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	1	0	0	11	0											1						16.8	16.8	1	0.049247	12339	DP690-11	50.025	8.5224			0.86384	1.0368	NaN	1	0	Median	62834000	29039000	33795000	12808	144	11936	24862	60186	60186		0	9606
SISFHPSGDFILVGTQHPTLR	0	1	Unmodified	2308.1964	0.19641498	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	13	0													2				17.794	17.794	3;4	1.5234E-05	12487	DP690-13	122.19	81.842			1.8873	2.2773	NaN	1	0	Median	232910000	31201000	201710000	12809	1114	11937	24863;24864	60187;60188;60189;60190	60189		4	9606
SISFIPPDGEFELMR	0	1	Oxidation (M)	1752.8393	0.83927219	1836	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	1	0	13	0													1				20.514	20.514	2	0.0016591	16126	DP690-13	97.911	77.596			0.90879	1.1194	NaN	1	0	Median	18064000	11428000	6636100	12810	1836	11938	24865	60191	60191	2411	1	9606
SISHYHETLGEALQGVELEFSGLDIK	1	0	Unmodified	2871.4291	0.42905327	2173	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	9	0									1								22.313	22.313	4	0.004526	17494	DP690-9	53.551	43.293			0.87872	1.0945	NaN	1	0	Median	4656700	2731800	1924900	12811	2173	11939	24866	60192	60192		1	9606
SISISVAGGGGGFGAAGGFGGR	0	1	Unmodified	1837.9071	0.90710925	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	5	4	1								1								18.601	18.601	2	9.1881E-09	13154	DP690-9	157.5	94.177		+	NaN	NaN	NaN	0	0	Median	11709000	11709000	0	12812	44	11940	24867;24868	60193;60194;60195	60194		3	9606
SISISVAR	0	1	Unmodified	831.48142	0.48141661	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	8.61	4.81	1		1	5			1	1	1	1	1	1	1	1	1	2	13.734	13.734	2	6.8468E-10	6636	DP690-8	177.71	39.227		+	NaN	NaN	NaN	0	0	Median	1053199999.9999999	1053199999.9999999	0	12813	369	11941	24869;24870;24871;24872;24873;24874;24875;24876;24877;24878;24879;24880;24881;24882;24883;24884;24885;24886	60196;60197;60198;60199;60200;60201;60202;60203;60204;60205;60206;60207;60208;60209;60210;60211;60212;60213;60214;60215;60216;60217;60218;60219;60220;60221;60222;60223;60224	60221		29	9606
SISLYYTGEK	1	0	Unmodified	1159.5761	0.57610486	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11.5	0.5											1	1					15.758	15.758	2	0.00060325	10458	DP690-11	115.7	77.423			0.93366	1.0214	2.6383	2	0	Median	674900000	343680000	331220000	12814	534	11942	24887;24888	60225;60226;60227;60228;60229;60230;60231	60226		7	9606
SITADPLDYR	0	1	Unmodified	1149.5666	0.5666028	867	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	11	0											1						16.63	16.63	2	0.03762	11757	DP690-11	68.371	52.168			1.0659	1.2835	NaN	1	0	Median	78656000	39703000	38953000	12815	867	11943	24889	60232	60232		1	9606
SITVLVEGENTR	0	1	Unmodified	1316.6936	0.69359423	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	7	4			1								1						15.654	15.654	2	0.00031494	10384	DP690-11	196.52	196.52			0.9657	1.126	7.6258	2	0	Median	136250000	69428000	66820000	12816	653	11944	24890;24891	60233;60234;60235;60236;60237;60238;60239;60240	60235		8	9606
SIVAVEPR	0	1	Unmodified	869.49707	0.49706667	1451	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	6	0						1											14.143	14.143	1	0.025739	7269	DP690-6	92.467	11.085			NaN	NaN	NaN	0	0	Median	2362000	2362000	0	12817	1451	11945	24892	60241	60241		1	9606
SIVEEIEDLVAR	0	1	Unmodified	1371.7246	0.72456001	376	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	10.7	1.25									1		1	1					24.553	24.553	2	1.2739E-07	21118	DP690-12	199.11	199.11			0.68599	0.83802	23.203	3	0	Median	13974000	8294100	5679400	12818	376	11946	24893;24894;24895	60242;60243;60244;60245;60246;60247;60248;60249;60250;60251;60252;60253;60254;60255	60249		14	9606
SIVGMTMYNQATQEIAKPSELLTSVR	1	1	2 Oxidation (M)	2898.4467	0.44669395	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	2	1	8.33	3.77			1								2						18.754	18.754	3	2.715E-23	13519	DP690-3	183.01	172.4			0.83954	0.93111	NaN	1	0	Median	73879000	48125000	25753000	12819	2437	11947	24896;24897;24898	60256;60257;60258;60259;60260;60261;60262;60263	60263	2882;2883	8	9606
SIVIRPLEPQPAPHLAR	0	2	Unmodified	1893.0949	0.094850444	1314	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	1	11	0											1						14.635	14.635	4	0.053989	8868	DP690-11	39.531	28.411			0.64054	0.7896	NaN	1	0	Median	117900000	67653000	50252000	12820	1314	11948	24899	60264	60264		1	9606
SIVNYKPK	2	0	Unmodified	947.54402	0.54401687	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	1	11	0											1						10.666	10.666	2	0.065727	3056	DP690-11	92.191	52.544			0.84119	0.94893	NaN	1	0	Median	172010000	94341000	77670000	12821	476	11949	24900	60265	60265		0	9606
SIVSESDVSSFEIQHSGFVK	1	0	Unmodified	2181.059	0.058978027	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	10	0										1							18.064	18.064	3	0.01294	13990	DP690-10	79.461	49.643			NaN	NaN	NaN	0	0	Median	72138000	72138000	0	12822	1282	11950	24901	60266;60267	60266		2	9606
SIVTAEVSSMPACK	1	0	Oxidation (M)	1494.7058	0.70581517	1563	Q86SZ2	TRAPPC6B	Trafficking protein particle complex subunit 6B	yes	yes	0	1	0	16	0																1	13.518	13.518	2	0.0042344	6611	DP690-16	114.86	62.615			NaN	NaN	NaN	0	0	Median	3326500	3326500	0	12823	1563	11951	24902	60268;60269	60268	2238	2	9606
SIVTDLVSQMDPHGR	0	1	Oxidation (M)	1669.8094	0.80936904	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	1	0	3	0			1														16.555	16.555	3	0.027905	10767	DP690-3	54.768	37.888			0.68761	0.78513	NaN	1	0	Median	24447000	15378000	9068800	12824	203	11952	24903	60270;60271	60271	212	2	9606
SIVTDLVSQMDPHGR	0	1	Unmodified	1653.8145	0.81445442	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	3	0			1														20.323	20.323	3	0.053147	15551	DP690-3	64.842	36.56			NaN	NaN	NaN	0	0	Median	2153000	0	2153000	12825	203	11952	24904	60272	60272		1	9606
SIVTSSGTTASAPPHSPGQAGGHASDTRPTK	1	1	Unmodified	2959.4384	0.43838918	1529	Q7L2K0	C16orf59	Uncharacterized protein C16orf59	yes	yes	0	0	1	13	0													1				10.476	10.476	5	2.0076E-06	2761	DP690-13	92.545	73.432			0.50494	0.59142	NaN	1	0	Median	57795000	36609000	21186000	12826	1529	11953	24905	60273	60273		1	9606
SIYGEKFEDENFILK	2	0	Unmodified	1830.904	0.90398093	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	1	8	0								2									18.02	18.02	2;3	0.0016919	11445	DP690-8	80.371	54.392			0.84459	0.97841	0.72595	2	0	Median	33246000	16712000	16534000	12827	1008	11954	24906;24907	60274;60275;60276;60277;60278;60279	60277		6	9606
SIYYITGESK	1	0	Unmodified	1159.5761	0.57610486	416;1411	P08238;Q58FF8	HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	3.67	0.471			1	2													15.094	15.094	2	7.5241E-05	8691	DP690-3	164.46	118.48			0.75586	0.7757	31.356	2	0	Median	607700000	311500000	296200000	12828	416;1411	11955	24908;24909;24910	60280;60281;60282;60283;60284;60285;60286;60287;60288	60283		9	9606
SKAEAEALYQTK	2	0	Unmodified	1337.6827	0.68269519	25;56	CON__ENSEMBL:ENSBTAP00000038253;CON__Q9R0H5;CON__Q3SY84;Q3SY84	KRT71	Keratin, type II cytoskeletal 71	no	no	0	0	1	10	6				1												1	10.979	10.979	2	5.0713E-24	3420	DP690-4	211.63	144.67		+	NaN	NaN	NaN	0	0	Median	4629000	4629000	0	12829	25;56	11956	24911;24912	60289;60290;60291;60292	60290		4	9606
SKAEAESLYQSK	2	0	Unmodified	1339.662	0.66195975	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	4.25	3.42	1		2							1							10.703	10.703	2	1.4443E-88	2566	DP690-1	303.71	225.59		+	NaN	NaN	NaN	0	0	Median	454060000	454060000	0	12830	369	11957	24913;24914;24915;24916	60293;60294;60295;60296;60297;60298;60299	60293		7	9606
SKAEAESLYQSKYEELQITAGR	2	1	Unmodified	2500.2445	0.24454697	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	2	7.17	3.53				2	1		1		1					1			15.77	15.77	3;4	3.7305E-08	9566	DP690-4	151.3	114.09		+	NaN	NaN	NaN	0	0	Median	134870000	134870000	0	12831	369	11958	24917;24918;24919;24920;24921;24922	60300;60301;60302;60303;60304;60305;60306;60307;60308	60301		9	9606
SKCEELSGLHGQLQEAR	1	1	Unmodified	1940.9374	0.9374231	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	1	10	0										1							12.68	12.68	3	2.1579E-06	6110	DP690-10	125.61	104.96			0.36105	0.45678	NaN	1	0	Median	52584000	33672000	18912000	12832	2303	11959	24923	60309;60310;60311;60312	60312		4	9606
SKDFVQVMR	1	1	Unmodified	1108.5699	0.56991404	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								12.993	12.993	2	0.019606	5837	DP690-9	99.442	52.448			0.72855	0.84498	NaN	1	0	Median	50475000	29730000	20745000	12833	1046	11960	24924	60313;60314;60315	60314		3	9606
SKDIFDQLAK	2	0	Unmodified	1163.6186	0.61863837	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	6.5	3.57			2						1		1						15.571	15.571	2	0.00029183	10210	DP690-11	164.33	88.235			0.73447	0.82535	7.1105	2	0	Median	840990000	437190000	403800000	12834	581	11961	24925;24926;24927;24928	60316;60317;60318;60319;60320;60321;60322;60323	60319		8	9606
SKDLAEVGEGGGHSQAR	1	1	Unmodified	1696.8129	0.81287452	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	1	6.5	4.03		1	1							1	1						10.324	10.324	3	2.6664E-05	2571	DP690-11	172.42	122.93			0.7816	0.87495	31.208	3	0	Plateau	514750000	296870000	217880000	12835	2065	11962	24929;24930;24931;24932	60324;60325;60326;60327	60325		3	9606
SKDPNSQVGACIVNSENK	2	0	Unmodified	1945.9164	0.91635331	644	P32321	DCTD	Deoxycytidylate deaminase	yes	yes	0	0	1	8	0								1									12.383	12.383	3	0.0074189	5154	DP690-8	60.602	60.602			0.80215	0.93599	NaN	1	0	Median	6351200	3979700	2371600	12836	644	11963	24933	60328;60329	60329		2	9606
SKDVINFTAEK	2	0	Unmodified	1250.6507	0.65066678	347	O96007	MOCS2	Molybdopterin synthase catalytic subunit	yes	yes	0	0	1	7.5	0.5							1	1									13.124	13.124	2	0.00191	6043	DP690-7	113.67	58.209			0.86603	0.97036	3.1952	2	0	Median	39152000	21873000	17279000	12837	347	11964	24934;24935	60330;60331;60332;60333;60334;60335	60333		6	9606
SKEELHQDCLVLATAK	2	0	Unmodified	1840.9353	0.93529784	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	1	10	0										1							13.079	13.079	3	4.2466E-05	6690	DP690-10	122.08	104.16			0.94904	1.0858	NaN	1	0	Median	250670000	119730000	130940000	12838	1724	11965	24936	60336;60337	60336		2	9606
SKEEQEKVEADMIQQR	2	1	Oxidation (M)	1962.9317	0.93166902	1053	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	1	2	14	0														1			10.482	10.482	3	0.0027786	2766	DP690-14	73.833	56.755			0.85313	1.0268	NaN	1	0	Median	32327000	17347000	14981000	12839	1053	11966	24937	60338;60339;60340	60339	1650	3	9606
SKEETGISLQDLLLEIYR	1	1	Unmodified	2106.1209	0.12085	1197	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	1	9.5	0.5									1	1							23.073	23.073	3	0.037512	20811	DP690-10	48.196	29.879			0.52287	0.6041	11.68	2	0	Median	12854000	7192200	5661800	12840	1197	11967	24938;24939	60341;60342	60341		2	9606
SKELTTEIDNNIEQISSYK	2	0	Unmodified	2211.0907	0.090672086	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	6.5	6.18	2							1								1	18.431	18.431	2;3	5.8843E-20	10013	DP690-1	181.6	125.56		+	NaN	NaN	NaN	0	0	Median	45898000	45898000	0	12841	42	11968	24940;24941;24942;24943	60343;60344;60345;60346;60347;60348	60345		6	9606
SKENCVVDNIK	2	0	Unmodified	1304.6395	0.63945017	2151	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	yes	yes	0	0	1	11	0											1						10.948	10.948	2	0.023791	3522	DP690-11	85.924	60.302			0.79088	0.95259	NaN	1	0	Median	16935000	8890800	8044300	12842	2151	11969	24944	60349	60349		1	9606
SKENHADLGIFVK	2	0	Unmodified	1456.7674	0.76742787	1727	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	1	11	0											1						13.552	13.552	3	0.070912	7342	DP690-11	36.631	16.85			0.5699	0.66736	NaN	1	0	Median	57521000	34553000	22968000	12843	1727	11970	24945	60350	60350		1	9606
SKEQAELEAAR	1	1	Unmodified	1230.6204	0.62042929	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10	0										2							10.579	10.579	2;3	7.1405E-05	3057	DP690-10	103.43	72.883			0.79795	0.89416	9.7526	2	0	Median	865070000	469270000	395800000	12844	1319	11971	24946;24947	60351;60352;60353;60354	60354		4	9606
SKESLVSFAMQHVR	1	1	Oxidation (M)	1633.8246	0.82462518	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	1	1	7	4			1								1						14.559	14.559	3	0.0021844	8756	DP690-11	78.985	58.246			1.1079	1.2602	33.108	2	0	Median	124980000	58508000	66474000	12845	1613	11972	24948;24949	60355;60356;60357;60358	60355	2266	4	9606
SKFDNLYGCR	1	1	Unmodified	1258.5765	0.57645598	571	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	1	5	0					1												13.059	13.059	2	0.051713	5778	DP690-5	106.68	56.643			NaN	NaN	NaN	0	0	Median	32389000	0	32389000	12846	571	11973	24950	60359	60359		1	9606
SKITVTSEVPFSK	2	0	Unmodified	1421.7766	0.77659558	665	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	1	16	0																1	14.447	14.447	2	1.0031E-07	7804	DP690-16	204.32	126.79			0.83564	0.94499	NaN	1	0	Median	31902000	18176000	13726000	12847	665	11974	24951	60360;60361;60362;60363	60362		4	9606
SKKPPPVPALPSK	3	0	Unmodified	1344.8129	0.8129215	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	2	12	0												1					10.716	10.716	3	0.046444	3131	DP690-12	80.371	56.659			NaN	NaN	NaN	0	0	Median	0	0	0	12848	1269	11975	24952	60364	60364		1	9606
SKLDQGGVIQDFINALDQLSNPELLFK	2	0	Unmodified	3001.5761	0.57605186	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								28.598	28.598	3	1.3615E-05	23599	DP690-9	114.49	102.24			0.73481	0.87945	NaN	1	0	Median	12502000	6986500	5515800	12849	1046	11976	24953	60365;60366;60367;60368;60369;60370;60371	60370		7	9606
SKLESELANFGPR	1	1	Unmodified	1446.7467	0.74669243	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	1	10	0										1							16.432	16.432	3	2.6634E-05	11550	DP690-10	133.04	74.528			0.79005	0.93935	NaN	1	0	Median	179200000	101020000	78181000	12850	1285	11977	24954	60372	60372		1	9606
SKLHLVDLAGSER	1	1	Unmodified	1423.7783	0.77832691	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	1	10	0										1							13.618	13.618	3	0.0066147	7494	DP690-10	72.175	46.197			0.8378	1.0365	NaN	1	0	Median	99473000	55188000	44285000	12851	311	11978	24955	60373;60374	60373		2	9606
SKLPDGPTGSSEEEEEFLEIPPFNK	2	0	Unmodified	2775.3127	0.31268611	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	1	10	0										1							19.821	19.821	3	0.066279	16588	DP690-10	62.005	30.532			NaN	NaN	NaN	0	0	Median	24838000	24838000	0	12852	1167	11979	24956	60375	60375		1	9606
SKLSQNNFALGYK	2	0	Unmodified	1468.7674	0.76742787	2433	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	1	15	0															1		13.936	13.936	2	6.3679E-05	7321	DP690-15	183.03	138.05			0.73306	0.83878	NaN	1	0	Median	10937000	5414800	5521900	12853	2433	11980	24957	60376;60377	60377		2	9606
SKPFAFGNSSATGSLFGFSFNAPLK	2	0	Unmodified	2578.2856	0.28562392	808;16	P49792;O14715;A6NKT7	RANBP2;RGPD8;RGPD3	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 3	no	no	0	0	1	9	0									1								21.582	21.582	3	0.00029269	16757	DP690-9	92.518	78.787			0.73664	0.89258	NaN	1	0	Median	7771500	4415800	3355700	12854	808;16	11981	24958	60378;60379;60380;60381	60380		4	9606
SKPGAAMVEMADGYAVDR	1	1	2 Oxidation (M)	1898.8502	0.85024758	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	2	1	12	0												3					12.53	12.53	2;3	7.7909E-07	5704	DP690-12	134.52	108.1			0.63067	0.79299	9.8608	3	0	Median	347610000	199840000	147770000	12855	494	11982	24959;24960;24961	60382;60383;60384;60385;60386;60387;60388;60389;60390;60391;60392	60389	628;629	11	9606
SKPGAAMVEMADGYAVDR	1	1	Oxidation (M)	1882.8553	0.85533296	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	1	1	12	0												1					13.851	13.851	3	8.5378E-07	7403	DP690-12	136.43	117.75			0.72194	0.79518	NaN	1	0	Median	219400000	114780000	104620000	12856	494	11982	24962	60393;60394;60395;60396	60395	628;629	4	9606
SKPGAAMVEMADGYAVDR	1	1	Unmodified	1866.8604	0.86041834	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	1	12	0												1					16.317	16.317	3	1.3549E-06	10818	DP690-12	106.7	88.741			0.70924	0.79351	NaN	1	0	Median	180070000	102300000	77766000	12857	494	11982	24963	60397;60398;60399	60398		3	9606
SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR	1	1	Acetyl (Protein N-term);2 Oxidation (M)	3586.6392	0.63915595	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	1	2	1	4	0				2													16.443	16.443	4;5	2.3177E-06	10476	DP690-4	78.942	64.594			0.97211	1.1087	9.7112	2	0	Median	78005000	38416000	39589000	12858	488	11983	24964;24965	60400;60401;60402;60403;60404	60403	612;613	5	9606
SKQPLPSAPENNPEEELASK	2	0	Unmodified	2164.0648	0.064791686	124	O14965	AURKA	Aurora kinase A	yes	yes	0	0	1	13	0													1				14.102	14.102	3	9.659E-18	7474	DP690-13	197.6	197.6			0.57029	0.63323	NaN	1	0	Median	129960000	82275000	47687000	12859	124	11984	24966	60405;60406;60407	60406		3	9606
SKSEEAHAEDSVMDHHFR	1	1	Oxidation (M)	2126.9076	0.90757954	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	1	1	13	0													4				11.002	11.002	4;5	0.00048296	2526	DP690-13	83.751	79.312			0.86969	0.90011	5.1271	3	0	Median	2468400000	1294500000	1173900000	12860	1678	11985	24967;24968;24969;24970	60408;60409;60410;60411;60412;60413;60414;60415;60416;60417;60418	60408	2285	11	9606
SKSEEAHAEDSVMDHHFR	1	1	Unmodified	2110.9127	0.91266492	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	13	0													2				11.538	11.538	4;5	1.6243E-05	4105	DP690-13	123.92	123.92			0.88286	0.94823	2.0582	2	0	Median	447230000	237770000	209460000	12861	1678	11985	24971;24972	60419;60420;60421;60422;60423;60424;60425;60426;60427;60428;60429	60428		11	9606
SKTDLPEEKPDATPQNPFLK	3	0	Unmodified	2254.1481	0.14812739	8	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	2	11	0											1						14.909	14.909	3	0.00027274	9262	DP690-11	97.621	73.027			0.66269	0.71781	NaN	1	0	Median	88824000	53193000	35631000	12862	8	11986	24973	60430;60431	60430		2	9606
SKTPEIYLAYR	1	1	Unmodified	1339.7136	0.71360139	1710;1796	Q8TAQ2;Q92922	SMARCC2;SMARCC1	SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1	no	no	0	0	1	10	0										3							14.903	14.903	2;3	0.00019922	9374	DP690-10	111.27	70.649			0.78208	0.93913	18.172	3	0	Plateau	320900000	171950000	148950000	12863	1710;1796	11987	24974;24975;24976	60432;60433;60434;60435	60433		4	9606
SKVDEAVAVLQAHQAK	2	0	Unmodified	1692.9159	0.91588303	471	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	1	7.5	3.5				1							1						14.503	14.503	3	0.00045511	7902	DP690-4	92.439	70.608			1.3104	1.4444	12.911	2	0	Median	105750000	45347000	60404000	12864	471	11988	24977;24978	60436;60437;60438;60439;60440;60441;60442	60442		7	9606
SKVEETTEHLVTK	2	0	Unmodified	1499.7831	0.78313752	859	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	1	11	0											1						11.246	11.246	3	0.0010753	3927	DP690-11	90.689	36.683			0.85702	0.989	NaN	1	0	Median	88365000	40982000	47383000	12865	859	11989	24979	60443;60444	60444		2	9606
SLAAEEEAAR	0	1	Unmodified	1045.504	0.50400254	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							11.766	11.766	2	8.7552E-05	4177	DP690-9	159.28	108.22			0.74526	0.88685	NaN	1	0	Median	185930000	167100000	18826000	12866	1319	11990	24980;24981	60445;60446;60447	60446		3	9606
SLADELALVDVLEDK	1	0	Unmodified	1628.8509	0.85088273	400	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	6	0						1											23.912	23.912	2	0.00034207	18318	DP690-6	110.38	84.334			1.2784	1.4212	NaN	1	0	Median	3047100	1342700	1704400	12867	400	11991	24982	60448	60448		1	9606
SLADVESQVSAQNK	1	0	Unmodified	1474.7264	0.72635092	1294	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	9	0									1								15.275	15.275	2	8.1066E-07	8879	DP690-9	159.99	111.39			NaN	NaN	NaN	0	0	Median	3144300	3144300	0	12868	1294	11992	24983	60449;60450	60449		2	9606
SLAEGNLLYQPQLDTLK	1	0	Unmodified	1902.0098	0.0098429899	2148	Q9H9H4	VPS37B	Vacuolar protein sorting-associated protein 37B	yes	yes	0	0	0	10	4						1								1			19.645	19.645	2	1.3623E-07	15209	DP690-14	167.22	139.55			0.56301	0.65636	33.197	2	0	Median	47213000	27442000	19770000	12869	2148	11993	24984;24985	60451;60452;60453;60454;60455;60456	60451		6	9606
SLAEGYFDAAGR	0	1	Unmodified	1255.5833	0.5833155	191	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	6	0						1											16.706	16.706	2	0.00020987	10150	DP690-6	121.5	90.429			0.80584	0.88484	NaN	1	0	Median	46576000	24121000	22455000	12870	191	11994	24986	60457;60458	60458		2	9606
SLAEMESSHQQVMEELQR	0	1	2 Oxidation (M)	2162.9572	0.95723185	2101	Q9H2D6	TRIOBP	TRIO and F-actin-binding protein	yes	yes	0	2	0	12	0												1					13.119	13.119	3	0.0091937	6315	DP690-12	84.653	59.312			NaN	NaN	NaN	0	0	Median	11783000	0	11783000	12871	2101	11995	24987	60459;60460	60460	2612;2613	2	9606
SLAGSSAGCGTIEQEFQDSFGEK	1	0	Unmodified	2404.0489	0.048883626	2561				yes	yes	0	0	0	14	0														1			22.53	22.53	2	0.00074028	18758	DP690-14	101.45	80.181	+		0.8923	1.0854	NaN	1	0	Median	44990000	24474000	20516000	12872	2561	11996	24988	60461;60462	60461		2	9606
SLAGSSGPGASSGTSGDHGELVVR	0	1	Unmodified	2184.0407	0.040702201	617	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	12.8	3.49						1								3		1	13.132	13.132	2;3	1.5938E-65	6273	DP690-14	265.43	216.31			0.91466	0.98003	2.6243	3	0	Plateau	997350000	510020000	487330000	12873	617	11997	24989;24990;24991;24992;24993	60463;60464;60465;60466;60467;60468;60469;60470;60471;60472;60473;60474;60475;60476;60477	60470		15	9606
SLAKPETDKEQDSEMEK	3	0	Oxidation (M)	1979.8994	0.89936584	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	1	2	3	0			2														10.238	10.238	3;4	0.00026045	2425	DP690-3	97.904	97.904			0.72972	0.75702	8.38	2	0	Median	55023000	29232000	25792000	12874	788	11998	24994;24995	60478;60479;60480;60481;60482	60479	1175	5	9606
SLALLGQTFSLASSFR	0	1	Unmodified	1696.9148	0.91482039	1609	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	11	0											1						23.094	23.094	2	0.00051668	20684	DP690-11	105.66	50.234			0.78717	0.96503	NaN	1	0	Median	5530000	3045700	2484300	12875	1609	11999	24996	60483	60483		1	9606
SLAMLGSSEDNTALSR	0	1	Oxidation (M)	1666.7832	0.78321387	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	1	0	4	0				1													15.372	15.372	2	5.987699999999999E-22	9027	DP690-4	238.01	206.58			0.8182	0.91699	NaN	1	0	Median	32883000	18171000	14712000	12876	1227	12000	24997	60484;60485;60486;60487;60488	60487	1874	5	9606
SLAMLGSSEDNTALSR	0	1	Unmodified	1650.7883	0.78829925	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	4	0				1													16.848	16.848	2	1.3722E-07	10918	DP690-4	174.21	123.86			0.90063	1.0469	NaN	1	0	Median	7152200	3999000	3153200	12877	1227	12000	24998	60489;60490;60491;60492;60493	60491		5	9606
SLAPSIHGHDYVK	1	0	Unmodified	1422.7256	0.72556306	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	7	4			1								1						11.861	11.861	3	0.0019109	4753	DP690-11	82.705	58.877			0.68137	0.73627	1.1746	2	0	Median	311160000	166030000	145130000	12878	581	12001	24999;25000	60494;60495;60496;60497;60498;60499;60500;60501	60496		8	9606
SLAPSIHGHDYVKK	2	0	Unmodified	1550.8205	0.82052608	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	8.6	2.94			1						2		2						10.524	10.524	3;4	0.00024551	2912	DP690-11	102.73	84.266			0.62767	0.7478	9.3011	5	0	Median	654410000	369300000	285120000	12879	581	12002	25001;25002;25003;25004;25005	60502;60503;60504;60505;60506;60507;60508;60509;60510;60511;60512;60513	60502		12	9606
SLAQAEAEKQKEEAER	2	1	Unmodified	1815.8963	0.8962698	1319	Q15149	PLEC	Plectin	yes	yes	0	0	2	9.5	0.5									2	2							10.656	10.656	3;4	5.4581E-18	2925	DP690-9	225.29	205.53			0.7208	0.82252	5.199	3	0	Plateau	768440000	341040000	427390000	12880	1319	12003	25006;25007;25008;25009	60514;60515;60516;60517;60518;60519;60520	60519		6	9606
SLAQEALR	0	1	Unmodified	886.48723	0.48723027	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	3	0			2														13.134	13.134	2	0.020494	6153	DP690-3	131.03	49.248			NaN	NaN	NaN	0	0	Median	0	0	0	12881	2437	12004	25010;25011	60521;60522	60522		2	9606
SLAYIHSFGICHR	0	1	Unmodified	1559.7667	0.76671637	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	13	0													2				14.71	14.71	3;4	0.00011428	8339	DP690-13	106.26	65.533			0.92388	1.102	5.5704	2	0	Median	182790000	92494000	90295000	12882	811	12005	25012;25013	60523;60524;60525;60526;60527	60523		5	9606
SLCIPFKPLCELQPGAK	2	0	Unmodified	1957.0165	0.016525047	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	6	4		1								1							18.941	18.941	3	0.0004473	15199	DP690-10	91.457	71.408			0.72188	0.81826	10.038	2	0	Median	93717000	54305000	39412000	12883	408	12006	25014;25015	60528;60529;60530	60528		3	9606
SLCNLEESITSAGR	0	1	Unmodified	1535.725	0.72497071	1398	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	13	0													1				18.263	18.263	2	0.0015666	13204	DP690-13	92.943	53.07			0.5604	0.67882	NaN	1	0	Median	60646000	39379000	21267000	12884	1398	12007	25016	60531	60531		1	9606
SLDDEVNAFK	1	0	Unmodified	1136.535	0.53496832	1248	Q14141	SEPT6	Septin-6	yes	yes	0	0	0	13	0													1				16.967	16.967	2	0.0047457	11480	DP690-13	123.86	72.514			NaN	NaN	NaN	0	0	Median	33400000	33400000	0	12885	1248	12008	25017	60532;60533	60532		2	9606
SLDITTSTTAYFPPGATLNNK	1	0	Unmodified	2211.1059	0.10592822	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	7	4			1								1						19.266	19.266	2	5.1923E-19	15695	DP690-11	236.3	196.57			0.81756	0.99291	NaN	1	0	Median	39450000	22418000	17033000	12886	1613	12009	25018;25019	60534;60535;60536;60537;60538;60539	60536		6	9606
SLDLDSIIAEVK	1	0	Unmodified	1301.7078	0.70784731	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	7.21	4.33	1	1	1	2	1	1	1	1	1		1	1	1			1	22.337	22.337	2	4.0678E-17	17502	DP690-9	242.35	159.08		+	NaN	NaN	NaN	0	0	Median	570430000	570430000	0	12887	369	12010	25020;25021;25022;25023;25024;25025;25026;25027;25028;25029;25030;25031;25032;25033	60540;60541;60542;60543;60544;60545;60546;60547;60548;60549;60550;60551;60552;60553;60554;60555;60556;60557;60558;60559;60560;60561;60562;60563;60564;60565;60566;60567;60568;60569;60570;60571;60572;60573;60574	60573		35	9606
SLDLDSIIAEVKAQYEDIAQK	2	0	Unmodified	2348.2111	0.21112157	369	P04264	KRT1	Keratin, type II cytoskeletal 1	yes	yes	0	0	1	7	2					1				1								25.051	25.051	3	2.0993E-11	20624	DP690-9	169.25	126.54		+	NaN	NaN	NaN	0	0	Median	12556000	12556000	0	12888	369	12011	25034;25035	60575;60576;60577;60578;60579;60580	60579		6	9606
SLDLDSIIAEVKAQYEDIAQKSK	3	0	Unmodified	2563.3381	0.338113	369	P04264	KRT1	Keratin, type II cytoskeletal 1	yes	yes	0	0	2	5	0					1												23.928	23.928	4	0.026237	19179	DP690-5	98.816	72.472		+	NaN	NaN	NaN	0	0	Median	3190100	3190100	0	12889	369	12012	25036	60581	60581		1	9606
SLDLIESLLR	0	1	Unmodified	1157.6656	0.66558856	10	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	6	4		1								1							23.244	23.244	2	8.7367E-05	20925	DP690-10	209.58	136.79			0.80005	0.90379	13.124	2	0	Median	31451000	16881000	14570000	12890	10	12013	25037;25038	60582;60583;60584;60585;60586;60587;60588;60589	60583		8	9606
SLDMDSIIAEVK	1	0	Unmodified	1319.6643	0.66426794	38	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	12.5	0.5												1	1				20.966	20.966	2	2.3455E-08	16697	DP690-13	232.88	203.22		+	0.8363	0.98827	2.5897	2	0	Median	61578000	34705000	26873000	12891	38	12014	25039;25040	60590;60591;60592;60593;60594;60595	60593		6	9606
SLDNNYSTPNER	0	1	Unmodified	1408.6219	0.62188585	216	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	7	4			1								1						12.172	12.172	2	0.00018114	5273	DP690-11	173.24	136.9			0.81285	0.93769	15.916	2	0	Median	67695000	40682000	27013000	12892	216	12015	25041;25042	60596;60597;60598;60599;60600;60601;60602;60603	60598		8	9606
SLDQEIARPLENENQEFLK	1	1	Unmodified	2272.1335	0.13353995	781	P48681	NES	Nestin	yes	yes	0	0	1	10	0										1							18.165	18.165	3	0.00017359	14099	DP690-10	102.57	80.169			0.85716	0.97008	NaN	1	0	Median	372060000	187810000	184250000	12893	781	12016	25043	60604;60605;60606	60604		3	9606
SLDQTSPCPLVLVR	0	1	Unmodified	1583.8341	0.83412723	1511	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	2	0		1															18.164	18.164	2	0.0060323	11592	DP690-2	78.513	55.368			0.72358	0.73955	NaN	1	0	Median	2551300	1646900	904470	12894	1511	12017	25044	60607;60608	60608		2	9606
SLDTESLQEMISEQR	0	1	Oxidation (M)	1780.8149	0.81490793	1506	Q6UWE0	LRSAM1	E3 ubiquitin-protein ligase LRSAM1	yes	yes	0	1	0	12	0												1					20.408	20.408	2	0.0057634	15964	DP690-12	83.499	46.355			0.81731	0.98097	NaN	1	0	Median	20309000	10557000	9751700	12895	1506	12018	25045	60609	60609	2190	1	9606
SLEAFFLYGR	0	1	Unmodified	1201.6132	0.61315906	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	8	3.46		1								3							21.472	21.472	2	1.792E-05	18744	DP690-10	178.83	126.11			0.83741	0.94452	12.937	2	0	Median	86217000	56570000	29647000	12896	1724	12019	25046;25047;25048;25049	60610;60611;60612;60613;60614;60615	60610		6	9606
SLEDALAEAQR	0	1	Unmodified	1201.5939	0.59388018	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	3	0			2														16.94	16.94	2	0.0074381	11192	DP690-3	112.11	45.678			NaN	NaN	NaN	0	0	Median	0	0	0	12897	317	12020	25050;25051	60616;60617	60616		2	9606
SLEDENKEAFR	1	1	Unmodified	1336.6259	0.62590859	781	P48681	NES	Nestin	yes	yes	0	0	1	10	0										2							12.227	12.227	2;3	5.0459E-05	5447	DP690-10	145.99	125.96			0.8459	0.99991	11.195	2	0	Median	464890000	250010000	214880000	12898	781	12021	25052;25053	60618;60619;60620;60621	60621		4	9606
SLEDLQDEYDFK	1	0	Unmodified	1500.662	0.66201933	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	3	0			1														18.639	18.639	2	4.7563E-05	13432	DP690-3	182.16	147.46			0.79825	0.84317	NaN	1	0	Median	37856000	19957000	17899000	12899	724	12022	25054	60622;60623;60624;60625	60624		4	9606
SLEEEGQELPQSADVQR	0	1	Unmodified	1913.8967	0.89666373	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										2							15.138	15.138	2	1.4922E-76	9739	DP690-10	293.76	238.5			0.74626	0.89192	NaN	1	0	Median	292920000	202540000	90385000	12900	781	12023	25055;25056	60626;60627;60628	60628		3	9606
SLEEILNSIPPPPPPAMTNEAGAPR	0	1	Oxidation (M)	2613.3109	0.31085239	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	1	0	10	0										1							20.871	20.871	2	5.3145E-06	17898	DP690-10	132.65	94.486			NaN	NaN	NaN	0	0	Median	0	0	0	12901	2215	12024	25057	60629	60629	2690	1	9606
SLEEIYLFSLPIK	1	0	Unmodified	1550.8596	0.85959692	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	11.7	3.65						1	1		2					2	2	1	23.333	23.333	2	5.2636E-10	19608	DP690-14	236.92	236.92			0.82659	0.94394	14.791	6	0	Median	226580000	118290000	108290000	12902	502	12025	25058;25059;25060;25061;25062;25063;25064;25065;25066	60630;60631;60632;60633;60634;60635;60636;60637;60638;60639;60640;60641;60642;60643;60644;60645;60646;60647;60648;60649;60650;60651;60652;60653;60654	60633		25	9606
SLEELLLDANQLR	0	1	Unmodified	1512.8148	0.814772	1254;2002	Q14160;Q9BTT6	SCRIB;LRRC1	Protein scribble homolog;Leucine-rich repeat-containing protein 1	no	no	0	0	0	11	0.816										1	1	1					22.445	22.445	2	4.8838E-10	20003	DP690-10	254.57	254.57			0.75426	0.92856	4.4046	2	0	Median	120370000	71229000	49144000	12903	1254;2002	12026	25067;25068;25069	60655;60656;60657;60658;60659;60660	60655		6	9606
SLEELPVDIILASVG	0	0	Unmodified	1553.8552	0.85523983	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	11	0											1						28.927	28.927	2	0.0037678	26326	DP690-11	121.73	91.341			NaN	NaN	NaN	0	0	Median	0	0	0	12904	2515	12027	25070	60661	60661		1	9606
SLEEQDQETLR	0	1	Unmodified	1346.6314	0.6313879	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										1							12.883	12.883	2	1.4002E-06	6370	DP690-10	226.47	195.67			0.91819	1.0553	NaN	1	0	Median	351740000	174720000	177020000	12905	781	12028	25071	60662;60663;60664;60665	60663		4	9606
SLEGADLPNLLFYGPPGTGK	1	0	Unmodified	2045.047	0.046956778	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	10	4						1								1			22.316	22.316	2	1.4231999999999999E-50	18521	DP690-14	317.91	296.14			0.67146	0.77399	15.122	2	0	Median	63596000	36293000	27303000	12906	662	12029	25072;25073	60666;60667;60668;60669;60670;60671;60672;60673;60674;60675	60668		10	9606
SLEICHPQER	0	1	Unmodified	1267.5979	0.5979197	2453	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	13	0													2				11.099	11.099	2;3	0.0011627	3579	DP690-13	107.69	73.507			0.78079	0.94143	2.6668	2	0	Median	50069000	28207000	21861000	12907	2453	12030	25074;25075	60676;60677;60678;60679;60680;60681;60682;60683	60681		8	9606
SLEISQSYTTTQR	0	1	Unmodified	1512.742	0.74200098	1197	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	9	0									1								14.48	14.48	2	0.0017572	7807	DP690-9	131.83	85.83			NaN	NaN	NaN	0	0	Median	0	0	0	12908	1197	12031	25076	60684	60684		1	9606
SLELLPIILTALATK	1	0	Unmodified	1594.9909	0.99094545	2234	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	10	0										1							27.222	27.222	2	2.0858E-05	25459	DP690-10	140.63	140.63			0.77678	0.93576	NaN	1	0	Median	4400500	2369700	2030700	12909	2234	12032	25077	60685;60686;60687	60686		3	9606
SLELNPNNSTAMLR	0	1	Oxidation (M)	1574.7723	0.77225526	2451	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	1	0	6	0						1											15.299	15.299	2	0.00045315	8462	DP690-6	113.38	77.727			0.72738	0.83329	NaN	1	0	Median	6146300	3392800	2753500	12910	2451	12033	25078	60688;60689;60690;60691	60690	2901	4	9606
SLEPMAGQLSNSVATK	1	0	Oxidation (M)	1647.8138	0.81378572	1491	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	1	0	10	0										1							14.321	14.321	2	0.0013939	8558	DP690-10	97.957	78.115			0.94354	1.1622	NaN	1	0	Median	51891000	27484000	24407000	12911	1491	12034	25079	60692;60693	60692	2178	2	9606
SLEPSPSPGPQEEDGEVALVLLGR	0	1	Unmodified	2475.2493	0.24929799	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							21.807	21.807	2	0.00028161	19170	DP690-10	108.63	80.986			NaN	NaN	NaN	0	0	Median	0	0	0	12912	1254	12035	25080	60694	60694		1	9606
SLEQNIQLPAALLSR	0	1	Unmodified	1651.9257	0.92571943	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	11.5	0.5											1	1					20.741	20.741	2	0.00033703	16809	DP690-12	110.64	110.64			0.87901	1.0632	16.627	2	0	Median	118860000	66835000	52026000	12913	653	12036	25081;25082	60695;60696;60697;60698;60699	60699		5	9606
SLESLDTSLFAK	1	0	Unmodified	1309.6765	0.67654718	1166	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	12	0												1					19.533	19.533	2	1.0514E-07	15182	DP690-12	201.61	170.93			0.81734	0.95673	NaN	1	0	Median	95331000	52651000	42680000	12914	1166	12037	25083	60700;60701;60702;60703	60700		4	9606
SLESLHSFVAAATK	1	0	Unmodified	1459.7671	0.76709352	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.25	2.9		1							2	2	2	1					17.439	17.439	2;3	5.5979E-14	12982	DP690-11	196.67	155.56			0.84407	0.93784	8.2344	8	0	Median	1817799999.9999998	1001199999.9999999	816570000	12915	1319	12038	25084;25085;25086;25087;25088;25089;25090;25091	60704;60705;60706;60707;60708;60709;60710;60711;60712;60713;60714;60715;60716;60717;60718;60719;60720;60721;60722;60723;60724;60725	60714		22	9606
SLESTTLTEK	1	0	Unmodified	1107.5659	0.5659341	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	0	15.2	0.433															3	1	12.997	12.997	2	0.00014945	5885	DP690-15	135.71	100.89			0.84495	0.89864	7.2417	2	0	Median	1913699999.9999998	1036799999.9999999	876930000	12916	1354	12039	25092;25093;25094;25095	60726;60727;60728;60729;60730;60731;60732;60733	60728		8	9606
SLESTTLTEKEGEIYCK	2	0	Unmodified	1986.9456	0.94558775	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	1	15.6	0.49															2	3	14.962	14.962	2;3	1.4382E-39	8638	DP690-15	325.74	294.59			0.83704	0.96059	5.7094	3	0	Plateau	3048799999.9999995	1656099999.9999998	1392700000	12917	1354	12040	25096;25097;25098;25099;25100	60734;60735;60736;60737;60738;60739;60740;60741;60742;60743;60744;60745;60746	60740		13	9606
SLETEILESLK	1	0	Unmodified	1260.6813	0.68129821	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										2							22.08	22.08	1;2	2.0168E-06	19517	DP690-10	218.94	170.15			0.98859	1.1941	5.5107	2	0	Median	218750000	112620000	106130000	12918	781	12041	25101;25102	60747;60748	60748		2	9606
SLETENAGLR	0	1	Unmodified	1088.5462	0.54620171	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	8	4				1								1					12.546	12.546	2	4.6763E-05	5487	DP690-12	184.49	115.3			0.80914	0.91117	6.7361	2	0	Median	404540000	223500000	181040000	12919	359	12042	25103;25104	60749;60750;60751;60752;60753;60754	60750		6	9606
SLETENSALQLQVTER	0	1	Unmodified	1816.9167	0.91667089	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					16.938	16.938	2	3.7969E-22	11699	DP690-12	250.51	201.51			1.1035	1.3205	NaN	1	0	Median	26747000	14716000	12031000	12920	544	12043	25105	60755;60756	60755		2	9606
SLETLLDHLGGLYK	1	0	Unmodified	1557.8403	0.84025847	2389	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	0	0	0	10	0										1							21.875	21.875	3	0.01911	19295	DP690-10	56.956	56.956			1.6603	2.0125	NaN	1	0	Median	7151500	2560200	4591400	12921	2389	12044	25106	60757	60757		1	9606
SLEYCSTASIDSENPPDLNK	1	0	Unmodified	2238.9951	0.99505714	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7.75	3.34		1							1	2							16.416	16.416	2	1.5384E-71	11605	DP690-10	364.99	339.54			0.72257	0.86359	11.871	2	0	Median	200180000	106070000	94118000	12922	1046	12045	25107;25108;25109;25110	60758;60759;60760;60761;60762;60763;60764;60765;60766;60767;60768	60760		11	9606
SLFDYFLTDLK	1	0	Unmodified	1360.6915	0.69146896	2187	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	0	0	7	0							1										24.642	24.642	2	0.00048326	19956	DP690-7	162.64	93.038			NaN	NaN	NaN	0	0	Median	11697000	11697000	0	12923	2187	12046	25111	60769;60770;60771	60770		3	9606
SLFEASQQLLNEMK	1	0	Unmodified	1636.8131	0.81305744	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							22.085	22.085	2	4.2412E-16	19534	DP690-10	266.26	213.87			0.71915	0.88404	NaN	1	0	Median	44138000	24525000	19612000	12924	13	12047	25112	60772;60773;60774	60772		3	9606
SLFFPDEAINK	1	0	Unmodified	1279.6449	0.64485312	776	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	4	0				1													19.075	19.075	2	0.016583	13689	DP690-4	73.841	45.264			0.62748	0.67232	NaN	1	0	Median	3918300	2160500	1757800	12925	776	12048	25113	60775	60775		1	9606
SLFINHHPPGQIAR	0	1	Unmodified	1585.8477	0.84774388	1684	Q8ND76	CCNY	Cyclin-Y	yes	yes	0	0	0	14	0														1			12.393	12.393	3	0.0064665	5276	DP690-14	69.846	48.597			0.57206	0.69368	NaN	1	0	Median	29984000	17865000	12119000	12926	1684	12049	25114	60776;60777	60777		2	9606
SLFNYHDTR	0	1	Unmodified	1151.536	0.53597137	2231	Q9NVA2	SEPT11	Septin-11	yes	yes	0	0	0	13	0													1				13.442	13.442	3	0.0025672	6569	DP690-13	92.051	42.991			1.0963	1.3436	NaN	1	0	Median	12923000	6412400	6510900	12927	2231	12050	25115	60778;60779;60780;60781	60779		4	9606
SLFPSLEGR	0	1	Unmodified	1004.5291	0.52909508	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								18.198	18.198	2	0.014945	12589	DP690-9	84.568	21.003			0.75747	0.94799	NaN	1	0	Median	4622300	2062500	2559800	12928	2272	12051	25116	60782	60782		1	9606
SLFSSIGEVESAK	1	0	Unmodified	1352.6824	0.68236084	1346	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	14.5	0.5														1	1		18.761	18.761	2	1.8402E-05	13935	DP690-14	181.53	118.45			0.91342	1.0564	21.084	2	0	Median	344140000	189970000	154170000	12929	1346	12052	25117;25118	60783;60784;60785;60786;60787;60788	60784		6	9606
SLFTYHDSR	0	1	Unmodified	1124.5251	0.52507234	2296	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	13	0													1				13.311	13.311	3	0.015629	6390	DP690-13	82.749	46.416			NaN	NaN	NaN	0	0	Median	0	0	0	12930	2296	12053	25119	60789	60789		1	9606
SLGAWNLENLR	0	1	Unmodified	1271.6622	0.66223452	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										1							19.193	19.193	2	0.00045511	15594	DP690-10	114.97	89.831			0.85841	1.0628	NaN	1	0	Median	106060000	59959000	46101000	12931	781	12054	25120	60790;60791	60790		2	9606
SLGEEIQESLK	1	0	Unmodified	1231.6296	0.62959699	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										1							17.694	17.694	2	0.00032853	13357	DP690-10	137.95	93.604			0.84141	0.99686	NaN	1	0	Median	259490000	145890000	113590000	12932	781	12055	25121	60792;60793	60792		2	9606
SLGEIPIVESEIKK	2	0	Unmodified	1540.8712	0.87122424	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	7.67	3.4			1						1		1						17.13	17.13	3	0.00013294	12510	DP690-11	108.23	89.4			0.60669	0.68628	77.405	3	0	Median	200840000	124440000	76401000	12933	877	12056	25122;25123;25124	60794;60795;60796;60797;60798;60799;60800	60795		7	9606
SLGELGLEHFQAPLVR	0	1	Unmodified	1764.9523	0.95226853	2279	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	3	0			1														18.828	18.828	3	0.0014272	13697	DP690-3	106.76	75.176			NaN	NaN	NaN	0	0	Median	14228000	14228000	0	12934	2279	12057	25125	60801;60802	60802		2	9606
SLGELYFLPR	0	1	Unmodified	1193.6445	0.64445919	1865	Q96GW9	MARS2	Methionine--tRNA ligase, mitochondrial	yes	yes	0	0	0	4	0				1													20.252	20.252	2	0.0033783	15206	DP690-4	93.162	34.566			1.0168	1.1738	NaN	1	0	Median	2479700	1269900	1209800	12935	1865	12058	25126	60803	60803		1	9606
SLGGNDELSATFLEMK	1	0	Oxidation (M)	1726.8084	0.80836599	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	1	0	10	0										1							18.841	18.841	2	0.00089304	15089	DP690-10	105.14	82.222			1.2331	1.5243	NaN	1	0	Median	74019000	37711000	36308000	12936	808	12059	25127	60804;60805;60806;60807	60804	1217	4	9606
SLGGNDELSATFLEMK	1	0	Unmodified	1710.8135	0.81345137	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	10	0										1							20.428	20.428	2	0.0082416	17272	DP690-10	72.891	48.426			0.61558	0.75662	NaN	1	0	Median	39440000	21486000	17953000	12937	808	12059	25128	60808	60808		1	9606
SLGLQLPDGQR	0	1	Unmodified	1182.6357	0.63568542	134	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	3	0			1														16.761	16.761	2	0.00096083	10948	DP690-3	128.86	90.724			0.85376	0.97569	NaN	1	0	Median	24050000	13612000	10438000	12938	134	12060	25129	60809;60810;60811;60812	60810		4	9606
SLGPPQGEEDSVPR	0	1	Unmodified	1466.7001	0.70013617	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	7.5	3.2		1							2	1							13.701	13.701	2	1.0609E-06	7613	DP690-10	192.5	139			0.64057	0.71811	3.56	3	0	Plateau	509140000	294710000	214440000	12939	1046	12061	25130;25131;25132;25133	60813;60814;60815;60816;60817;60818;60819;60820;60821;60822;60823	60815		11	9606
SLGSVQAPSYGAR	0	1	Unmodified	1291.6521	0.65206377	388	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	13	0													1				13.948	13.948	2	0.00015876	7209	DP690-13	172.21	142.14			0.86083	0.98435	NaN	1	0	Median	226300000	123620000	102680000	12940	388	12062	25134	60824;60825;60826;60827	60825		4	9606
SLGYAYVNFQQPADAER	0	1	Unmodified	1927.9064	0.90644055	471	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	10.3	2.87				1							2	3					17.954	17.954	2	2.1602E-36	13115	DP690-12	240.37	186.8			0.70341	0.81908	NaN	1	0	Median	31859000	4593200	27266000	12941	471	12063	25135;25136;25137;25138;25139;25140	60828;60829;60830;60831;60832;60833;60834;60835	60831		8	9606
SLHDAIMIVR	0	1	Unmodified	1153.6278	0.62776327	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	12	0												1					15.486	15.486	3	0.070621	9703	DP690-12	48.284	19.326			NaN	NaN	NaN	0	0	Median	0	0	0	12942	1959	12064	25141	60836	60836		1	9606
SLHDAIMIVR	0	1	Oxidation (M)	1169.6227	0.62267789	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	0	4	0				1													14.239	14.239	3	0.026023	7537	DP690-4	60.064	39.76			1.6551	1.9217	NaN	1	0	Median	6416600	2849900	3566700	12943	1959	12064	25142	60837;60838;60839;60840	60837	2503	4	9606
SLHDALCVIR	0	1	Unmodified	1182.6179	0.61792687	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	8	4				1								1					14.804	14.804	3	0.0005667	8279	DP690-4	104.42	0			1.5379	1.78	NaN	1	0	Median	4721400	2132600	2588800	12944	779	12065	25143;25144	60841;60842;60843;60844;60845;60846	60846		6	9606
SLHDALCVLAQTVK	1	0	Unmodified	1553.8236	0.82356254	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	4	0				1													19.836	19.836	3	0.031247	14542	DP690-4	53.038	35.238			1.7867	1.9593	NaN	1	0	Median	13389000	4812600	8576100	12945	1044	12066	25145	60847;60848;60849;60850;60851	60849		5	9606
SLHDALCVVK	1	0	Unmodified	1140.5961	0.59612879	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	4	0				1													13.865	13.865	2	0.00046259	7009	DP690-4	119.75	91.05			1.564	1.6839	NaN	1	0	Median	35585000	14645000	20940000	12946	520	12067	25146	60852;60853	60853		2	9606
SLHHPNIVGYR	0	1	Unmodified	1291.6786	0.67855329	1888	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	0	6	0						1											11.245	11.245	3	0.00025373	3758	DP690-6	108.9	83.889			0.90078	1.0316	NaN	1	0	Median	13017000	7220100	5797200	12947	1888	12068	25147	60854;60855;60856;60857	60857		4	9606
SLHPIHQGITELSR	0	1	Unmodified	1586.8529	0.85288884	2115	Q9H410	DSN1	Kinetochore-associated protein DSN1 homolog	yes	yes	0	0	0	14	0														1			13.017	13.017	3	0.0059559	6126	DP690-14	93.243	64.916			NaN	NaN	NaN	0	0	Median	33701000	33701000	0	12948	2115	12069	25148	60858;60859	60859		2	9606
SLHQFLLEPITCHAWNR	0	1	Acetyl (Protein N-term)	2163.0684	0.068377697	1786	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	yes	yes	1	0	0	14	0														1			20.382	20.382	3	2.1127E-09	16099	DP690-14	181.69	165.07			1.1695	1.3969	NaN	1	0	Median	104980000	46175000	58802000	12949	1786	12070	25149	60860;60861	60861		2	9606
SLHTLFGDELCK	1	0	Unmodified	1418.6864	0.68640036	37	CON__P02769			yes	yes	0	0	0	4	0				1													16.747	16.747	3	0.069543	10775	DP690-4	59.975	28.132		+	NaN	NaN	NaN	0	0	Median	15591000	15591000	0	12950	37	12071	25150	60862	60862		1	
SLICSISNEVPEHPCVSPVSNHVYER	0	1	Acetyl (Protein N-term)	3050.4226	0.42260446	2403	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	1	0	0	12	0												1					19.166	19.166	3	1.1382E-10	14774	DP690-12	152.96	131.26			0.589	0.70914	NaN	1	0	Median	17947000	10372000	7574900	12951	2403	12072	25151	60863;60864;60865	60863		3	9606
SLIEPISMIVPR	0	1	Unmodified	1353.769	0.76900778	1792	Q92828	CORO2A	Coronin-2A	yes	yes	0	0	0	12	0												1					21.081	21.081	2	0.0038199	17219	DP690-12	88.681	88.681			0.53268	0.64829	NaN	1	0	Median	11781000	8411200	3369700	12952	1792	12073	25152	60866;60867	60866		2	9606
SLIEPVNQSIVVSGESGAGK	1	0	Unmodified	1970.032	0.032034995	1866	Q96H55	MYO19	Unconventional myosin-XIX	yes	yes	0	0	0	11	0											2						17.472	17.472	2	9.3149E-14	12968	DP690-11	178.23	125.02			NaN	NaN	NaN	0	0	Median	31337000	19794000	11543000	12953	1866	12074	25153;25154	60868;60869	60869		2	9606
SLIGVEYKPVSATGAEDKDK	3	0	Unmodified	2106.0845	0.084464496	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	2	2	0		1															13.98	13.98	3	0.00029522	6515	DP690-2	96.143	96.143			0.74571	0.79457	NaN	1	0	Median	7994400	5009200	2985300	12954	408	12075	25155	60870;60871;60872;60873	60872		4	9606
SLIHTVLLQK	1	0	Unmodified	1150.7074	0.7073938	1895	Q96ME1	FBXL18	F-box/LRR-repeat protein 18	yes	yes	0	0	0	4	0				1													15.298	15.298	2	0.010011	8976	DP690-4	83.647	45.836			0.99073	1.063	NaN	1	0	Median	4644400	2018100	2626300	12955	1895	12076	25156	60874;60875	60875		2	9606
SLILTALQR	0	1	Unmodified	1013.6233	0.62332982	1728	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	3	0			1														17.895	17.895	2	0.00078396	12441	DP690-3	133.86	133.86			1.5258	1.7543	NaN	1	0	Median	17000000	6406300	10593000	12956	1728	12077	25157	60876	60876		1	9606
SLISVIHLITAAR	0	1	Unmodified	1392.8453	0.84528426	110	O14735	CDIPT	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	yes	yes	0	0	0	10	0										2							21.25	21.25	3	0.023421	18394	DP690-10	76.073	29.343			NaN	NaN	NaN	0	0	Median	0	0	0	12957	110	12078	25158;25159	60877;60878	60877		2	9606
SLISWNYLR	0	1	Unmodified	1150.6135	0.61349341	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								19.712	19.712	2	0.02825	14512	DP690-9	74.255	37.808			0.80262	1.0042	NaN	1	0	Median	4493900	2468400	2025500	12958	2411	12079	25160	60879	60879		1	9606
SLITTHHLMVYGNER	0	1	Oxidation (M)	1785.8832	0.88320269	1214	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	1	0	12	0												1					13.262	13.262	3	0.0060902	6590	DP690-12	70.26	41.977			1.0297	1.1718	NaN	1	0	Median	168750000	89847000	78907000	12959	1214	12080	25161	60880;60881;60882	60881	1860	3	9606
SLITTHHLMVYGNER	0	1	Unmodified	1769.8883	0.88828807	1214	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	12	0												1					14.046	14.046	3	0.0014356	7686	DP690-12	80.387	64.248			0.84245	0.9725	NaN	1	0	Median	126980000	65639000	61346000	12960	1214	12080	25162	60883;60884;60885	60883		3	9606
SLKDEDVLQK	2	0	Unmodified	1173.6241	0.62411768	2269	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	1	9.5	0.5									2	2							12.074	12.074	2;3	0.0012316	4664	DP690-9	123.86	94.197			0.75116	0.92585	10.719	3	0	Median	124650000	71935000	52714000	12961	2269	12081	25163;25164;25165;25166	60886;60887;60888;60889;60890;60891;60892	60888		7	9606
SLKEESVEAVK	2	0	Unmodified	1217.6503	0.65033243	781	P48681	NES	Nestin	yes	yes	0	0	1	10	0										3							11.03	11.03	2;3	2.6859E-06	3710	DP690-10	196.16	117.64			0.94212	1.1033	NaN	1	0	Median	184700000	94394000	90308000	12962	781	12082	25167;25168;25169	60893;60894;60895;60896;60897;60898;60899	60898		7	9606
SLLALINVLNALADAK	1	0	Unmodified	1637.9716	0.97160699	1593	Q86Y91	KIF18B	Kinesin-like protein KIF18B	yes	yes	0	0	0	11	0											1						27.222	27.222	2	6.2191E-07	25234	DP690-11	150.16	130.54			0.84312	1.0365	NaN	1	0	Median	19687000	10772000	8914900	12963	1593	12083	25170	60900;60901;60902;60903	60903		4	9606
SLLAWQSLR	0	1	Unmodified	1072.6029	0.60292873	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.5	1.12									1	1	1	1					18.728	18.728	2	2.9041E-10	14903	DP690-10	184.49	102.71			0.76821	0.89143	NaN	1	0	Median	383430000	354860000	28567000	12964	1319	12084	25171;25172;25173;25174	60904;60905;60906;60907;60908;60909;60910;60911;60912	60905		9	9606
SLLDEHHISYVIDEDVK	1	0	Unmodified	2010.9898	0.98983583	1466	Q69YQ0	SPECC1L	Cytospin-A	yes	yes	0	0	0	11	0											1						17.635	17.635	3	0.0018271	13192	DP690-11	74.141	74.141			0.92443	1.1174	NaN	1	0	Median	46312000	24457000	21855000	12965	1466	12085	25175	60913;60914	60914		2	9606
SLLDFLPR	0	1	Unmodified	959.54402	0.54401687	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	11	0											1						22.249	22.249	2	0.068999	19289	DP690-11	102.77	36.97			0.84315	1.0185	NaN	1	0	Median	97460000	53071000	44389000	12966	883	12086	25176	60915	60915		0	9606
SLLDGEGPQAVGGQDVAFSR	0	1	Unmodified	2001.9756	0.97558275	8	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	11	0											1						18.71	18.71	2	7.9231E-12	14751	DP690-11	195.54	141.34			NaN	NaN	NaN	0	0	Median	0	0	0	12967	8	12087	25177	60916	60916		1	9606
SLLDGNIDSSQYEDSLR	0	1	Unmodified	1910.8858	0.88576469	1927	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	10	0										1							19.27	19.27	2	0.00024232	15661	DP690-10	158.58	118.42			NaN	NaN	NaN	0	0	Median	0	0	0	12968	1927	12088	25178	60917	60917		1	9606
SLLEGEGSSGGGGR	0	1	Unmodified	1261.5899	0.58985744	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	9.08	4.08	1			1	1	1		1	1	3		1	1	1		1	12.333	12.333	2	2.7357000000000003E-35	5068	DP690-16	242.97	184.05		+	NaN	NaN	NaN	0	0	Median	337890000	337890000	0	12969	42	12089	25179;25180;25181;25182;25183;25184;25185;25186;25187;25188;25189;25190;25191	60918;60919;60920;60921;60922;60923;60924;60925;60926;60927;60928;60929;60930;60931;60932;60933;60934;60935;60936;60937;60938;60939	60930		22	9606
SLLEILNSAADILINSSEADEDGIRDEK	1	1	Unmodified	3029.5041	0.50406871	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	1	9	0									1								27.065	27.065	3	2.8259E-07	22514	DP690-9	126.96	103.49			0.74624	0.8655	NaN	1	0	Median	2427700	1251500	1176300	12970	2411	12090	25192	60940;60941;60942;60943;60944;60945;60946	60945		7	9606
SLLEIQQEEAR	0	1	Unmodified	1314.6779	0.67794416	1512	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	10	0										3							15.781	15.781	2	8.9963E-07	10682	DP690-10	169.41	93.236			NaN	NaN	NaN	0	0	Median	88269000	0	88269000	12971	1512	12091	25193;25194;25195	60947;60948;60949;60950	60948		4	9606
SLLEVVVLSR	0	1	Unmodified	1113.6758	0.67575932	10	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	7.33	3.77		1								2							20.296	20.296	2	0.013679	13858	DP690-2	78.516	7.1367			0.96255	0.98506	NaN	1	0	Median	1653700	851020	802630	12972	10	12092	25196;25197;25198	60951;60952;60953	60953		3	9606
SLLIPYLDNLVK	1	0	Unmodified	1386.8123	0.8122528	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			1														23.01	23.01	2	0.0053251	18654	DP690-3	84.817	60.585			0.94735	1.0122	NaN	1	0	Median	13868000	6996900	6870700	12973	82	12093	25199	60954;60955;60956;60957	60957		4	9606
SLLKEEDPAVLISEVLR	1	1	Unmodified	1910.0724	0.072443247	2080	Q9H019	MTFR1L	Mitochondrial fission regulator 1-like	yes	yes	0	0	1	14	0														1			22.423	22.423	3	0.00024968	18624	DP690-14	100.77	75.852			0.95598	1.1794	NaN	1	0	Median	7407800	3749400	3658400	12974	2080	12094	25200	60958;60959	60958		2	9606
SLLLAGAAEYDNFFQHLR	0	1	Unmodified	2064.0429	0.042874453	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	10.5	0.5										1	1						22.219	22.219	3	3.0667E-05	19683	DP690-10	192.4	152.82			0.66469	0.81976	NaN	1	0	Median	11570000	6692500	4877600	12975	1546	12095	25201;25202	60960;60961;60962	60960		3	9606
SLLNLLSSQEEDFNSK	1	0	Unmodified	1822.8949	0.89487281	2234	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	10	0										2							21.384	21.384	2	3.1471E-11	18688	DP690-10	207.47	151.42			NaN	NaN	NaN	0	0	Median	19472000	19472000	0	12976	2234	12096	25203;25204	60963;60964	60964		2	9606
SLLNQCIEER	0	1	Unmodified	1260.6132	0.61323542	1863	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	12	0												1					15.245	15.245	2	0.00045065	9317	DP690-12	120.09	79.739			1.2779	1.4608	NaN	1	0	Median	154320000	77694000	76625000	12977	1863	12097	25205	60965	60965		1	9606
SLLPLSTSLDHR	0	1	Unmodified	1337.7303	0.73031409	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0										1							16.699	16.699	3	2.8264E-05	12051	DP690-10	131.12	94.691			0.91235	1.1277	NaN	1	0	Median	116610000	60787000	55822000	12978	1724	12098	25206	60966;60967;60968;60969	60969		4	9606
SLLQALNEVK	1	0	Unmodified	1113.6394	0.63937381	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								18.673	18.673	2	0.00048121	13184	DP690-9	119.21	76.924			0.96108	1.1797	NaN	1	0	Median	28497000	14173000	14324000	12979	1264	12099	25207	60970;60971;60972	60971		3	9606
SLLQAWGLILR	0	1	Unmodified	1268.7605	0.760492	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								23.595	23.595	2	0.00013166	18984	DP690-9	145.63	123.55			0.88553	1.104	NaN	1	0	Median	3415700	1742100	1673500	12980	2217	12100	25208	60973;60974;60975;60976	60974		4	9606
SLLQGTILQYVK	1	0	Unmodified	1361.7919	0.79185171	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	3	0			1														20.903	20.903	2	0.019473	16290	DP690-3	98.249	31.814			NaN	NaN	NaN	0	0	Median	5439700	5439700	0	12981	1531;1849	12101	25209	60977	60977		1	9606
SLLQQLENVTK	1	0	Unmodified	1271.7085	0.70851601	2415	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	10	0										1							20.134	20.134	2	8.1093E-05	16924	DP690-10	142	93.904			0.9479	1.1708	NaN	1	0	Median	58652000	28525000	30128000	12982	2415	12102	25210	60978;60979;60980	60978		3	9606
SLLQTTFLVDNKK	2	0	Unmodified	1505.8453	0.84534384	1450	Q5VZE5	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	yes	yes	0	0	1	3	0			1														16.924	16.924	3	0.06145	11281	DP690-3	61.532	22.555			NaN	NaN	NaN	0	0	Median	4850000	0	4850000	12983	1450	12103	25211	60981	60981		1	9606
SLLSNLDEVKK	2	0	Unmodified	1244.6976	0.69761697	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	1	3	0			2														15.527	15.527	2;3	0.00021359	9293	DP690-3	131.52	72.599			0.77842	0.84056	NaN	1	0	Median	39612000	28677000	10935000	12984	1739	12104	25212;25213	60982;60983;60984;60985;60986;60987;60988	60983		7	9606
SLLSQMLHYDPNKR	1	1	Unmodified	1700.8668	0.86682434	580	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	1	14	0														1			18.059	18.059	4	0.0034739	13081	DP690-14	96.23	48.8			NaN	NaN	NaN	0	0	Median	9759100	0	9759100	12985	580	12105	25214	60989	60989		1	9606
SLLTEADAGHTEFTDEVYQNESR	0	1	Unmodified	2611.1674	0.16741886	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	10	0										1							18.082	18.082	3	2.9348E-38	13938	DP690-10	244.01	227.22			0.75685	0.9018	NaN	1	0	Median	220170000	119440000	100730000	12986	2276	12106	25215	60990;60991;60992;60993;60994	60991		5	9606
SLLTIQEVDEFLLR	0	1	Unmodified	1674.9192	0.91923707	814	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	11	0											2						24.312	24.312	2	0.0031157	22059	DP690-11	141.08	76.981			NaN	NaN	NaN	0	0	Median	0	0	0	12987	814	12107	25216;25217	60995;60996	60995		2	9606
SLLTLLWHCSLDALR	0	1	Unmodified	1796.9607	0.96072473	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								24.014	24.014	3	0.0063074	19498	DP690-9	68.044	45.679			0.70805	0.86402	NaN	1	0	Median	2079400	1217600	861730	12988	1046	12108	25218	60997;60998;60999	60997		3	9606
SLLTLLWHCSLDALREFFSTIVVDAIDVLK	1	1	Unmodified	3473.8632	0.8632491	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	10	0										1							30.277	30.277	4	0.0054172	27602	DP690-10	45.125	9.0327			0.93806	0.98272	NaN	1	0	Median	1922400	1053500	868910	12989	1046	12109	25219	61000	61000		1	9606
SLLVIPNTLAVNAAQDSTDLVAK	1	0	Unmodified	2352.29	0.2900406	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	8	4				1								1					21.945	21.945	2	1.6067E-06	16809	DP690-4	139.65	139.65			1.1635	1.3225	23.197	2	0	Median	5812700	2751800	3060800	12990	520	12110	25220;25221	61001;61002;61003;61004;61005;61006;61007;61008	61004		8	9606
SLLVNPEGPTLMR	0	1	Oxidation (M)	1441.7599	0.75989966	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	2.33	0.471		2	1														17.251	17.251	2	0.0026433	10930	DP690-3	96.171	96.171			0.68545	0.78089	5.1835	3	0	Plateau	146600000	85034000	61569000	12991	789	12111	25222;25223;25224	61009;61010;61011;61012;61013;61014;61015;61016;61017;61018	61018	1186	10	9606
SLLVNPEGPTLMR	0	1	Unmodified	1425.765	0.76498503	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															18.238	18.238	2	4.3742E-05	11491	DP690-2	154.84	115.3			0.65105	0.67887	NaN	1	0	Median	22352000	13706000	8645900	12992	789	12111	25225	61019;61020;61021;61022	61020		4	9606
SLMEQDVKENEALLLR	1	1	Oxidation (M)	1902.9721	0.97207728	1818	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	1	1	3	0			1														16.464	16.464	3	0.0012627	10607	DP690-3	80.102	62.82			0.95716	1.0616	NaN	1	0	Median	14997000	7313000	7683700	12993	1818	12112	25226	61023;61024	61023	2401	2	9606
SLMPYFLLTQAVR	0	1	Oxidation (M)	1553.8276	0.82758529	168	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	1	0	4	0				1													21.313	21.313	2	0.00027522	16195	DP690-4	120.63	95.392			1.4428	1.666	NaN	1	0	Median	2770300	1128300	1641900	12994	168	12113	25227	61025;61026	61026	188	2	9606
SLNADVPEQLITPLVSLGHISMLAPDQFASPMK	1	0	2 Oxidation (M)	3550.8051	0.80514187	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	2	0	10	0										1							23.571	23.571	3	0.00019251	21423	DP690-10	80.245	60.176			NaN	NaN	NaN	0	0	Median	0	0	0	12995	1377	12114	25228	61027	61027	2125;2126	1	9606
SLNDLIEER	0	1	Unmodified	1087.551	0.55095274	1888	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	0	6	0						1											16.997	16.997	2	0.017539	10521	DP690-6	81.95	9.7205			0.91201	1.0459	NaN	1	0	Median	12503000	5690000	6812800	12996	1888	12115	25229	61028;61029;61030;61031	61031		4	9606
SLNNQFASFIDK	1	0	Unmodified	1382.683	0.68302954	369;25	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	7.75	4.82	1	1	1	1	1		1	1	1	1			1		1	1	18.802	18.802	2	9.8551E-12	13329	DP690-9	190.57	64.602		+	NaN	NaN	NaN	0	0	Median	552620000	552620000	0	12997	369;25	12116	25230;25231;25232;25233;25234;25235;25236;25237;25238;25239;25240;25241	61032;61033;61034;61035;61036;61037;61038;61039;61040;61041;61042;61043;61044;61045;61046;61047;61048;61049;61050;61051;61052;61053;61054;61055;61056;61057;61058	61058		27	9606
SLNNQFASFIDKVR	1	1	Unmodified	1637.8526	0.85255449	369;25	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	1	9.14	5.49	1	1						1	1					1	2		18.993	18.993	2;3	0.002178	13604	DP690-9	149.57	98.672		+	NaN	NaN	NaN	0	0	Median	66403000	66403000	0	12998	369;25	12117	25242;25243;25244;25245;25246;25247;25248	61059;61060;61061;61062;61063;61064;61065;61066;61067;61068	61068		10	9606
SLNSDISYFGVGGK	1	0	Unmodified	1442.7042	0.70415892	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							18.411	18.411	2	6.9413E-05	14435	DP690-10	147.28	101.28			0.76231	0.91319	NaN	1	0	Median	224110000	129310000	94799000	12999	13	12118	25249	61069;61070	61069		2	9606
SLNSIEFR	0	1	Unmodified	964.49779	0.49779495	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								15.382	15.382	2	0.052406	8990	DP690-9	152.47	59.042			0.79836	0.88574	NaN	1	0	Median	140800000	78523000	62280000	13000	1046	12119	25250	61071	61071		0	9606
SLNVSSSVNQASR	0	1	Unmodified	1347.6743	0.67425577	337	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	9	0									1								12.64	12.64	2	0.0062406	5406	DP690-9	108.9	71.839			NaN	NaN	NaN	0	0	Median	2572800	0	2572800	13001	337	12120	25251	61072	61072		1	9606
SLNWSSFVDNTFAEEFTTQNQK	1	0	Unmodified	2592.1769	0.17686133	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	11	0											2						23.651	23.651	2	4.2933E-37	21369	DP690-11	241.27	221.51			0.92193	1.1357	NaN	1	0	Median	11383000	5178800	6203900	13002	2340	12121	25252;25253	61073;61074;61075;61076	61075		4	9606
SLPASLSFLVK	1	0	Unmodified	1160.6805	0.68051035	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							20.415	20.415	2	0.0045737	17251	DP690-10	89.029	68.888			0.86598	1.0688	NaN	1	0	Median	112260000	58686000	53571000	13003	1254	12122	25254	61077;61078;61079;61080	61077		4	9606
SLPLNPK	1	0	Acetyl (Protein N-term)	809.4647	0.46470391	978	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	1	0	0	16	0																1	16.82	16.82	1	0.032449	10638	DP690-16	67.035	14.804			0.70016	0.81588	NaN	1	0	Median	24518000	13914000	10604000	13004	978	12123	25255	61081	61081		0	9606
SLPLNPKPFLNGLTGK	2	0	Acetyl (Protein N-term)	1736.9825	0.98250603	978	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	1	0	1	16	0																1	21.811	21.811	2	0.0049634	16672	DP690-16	64.65	51.67			0.66408	0.7414	NaN	1	0	Median	1937200	1149900	787320	13005	978	12124	25256	61082;61083;61084;61085	61082		4	9606
SLPLNPKPFLNGLTGKPVMVK	3	0	Acetyl (Protein N-term);Oxidation (M)	2307.3025	0.30245996	978	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	1	1	2	16	0																1	20.088	20.088	3	0.0015583	14635	DP690-16	67.396	59.916			0.57623	0.70874	NaN	1	0	Median	22446000	14140000	8306000	13006	978	12125	25257	61086	61086	1495	1	9606
SLPSVETLGCTSVICSDK	1	0	Unmodified	1951.9231	0.92307817	506	P16615;O14983;Q93084	ATP2A2;ATP2A1;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	yes	no	0	0	0	11	0											1						18.376	18.376	2	6.557E-11	14232	DP690-11	162.72	136.74			0.68658	0.82887	NaN	1	0	Median	52625000	35127000	17498000	13007	506	12126	25258	61087;61088;61089;61090	61088		4	9606
SLPSVLVIHLMR	0	1	Oxidation (M)	1379.7959	0.79589123	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	1	0	2	0		2															18.027	18.027	2;3	0.0042757	11340	DP690-2	91.867	69.781			0.81713	0.85508	4.18	2	0	Median	14456000	8188800	6267700	13008	2418	12127	25259;25260	61091;61092;61093;61094;61095	61092	2849	5	9606
SLPVEEQPK	1	0	Unmodified	1025.5393	0.53932542	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							11.8	11.8	2	0.073575	4820	DP690-10	60.118	60.118			0.99867	1.2331	NaN	1	0	Median	127940000	71143000	56797000	13009	1492	12128	25261	61096	61096		1	9606
SLPYNQPGTCYTLVALPK	1	0	Unmodified	2021.0292	0.029198224	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	7	4			1								1						19.171	19.171	2	0.0001293	14165	DP690-3	139.74	102.13			0.6745	0.82056	NaN	1	0	Median	48059000	21715000	26345000	13010	2515	12129	25262;25263	61097;61098;61099;61100;61101;61102;61103	61103		7	9606
SLQADTTNTDTALTTLEEALAEKER	1	1	Unmodified	2720.3352	0.33521247	1596	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	1	11	0											1						21.137	21.137	3	1.2815E-08	18156	DP690-11	134.34	104.62			NaN	NaN	NaN	0	0	Median	20556000	0	20556000	13011	1596	12130	25264	61104	61104		1	9606
SLQALGEVIEAELR	0	1	Unmodified	1526.8304	0.83042206	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	10.8	3.96				1								1	1	1			23.211	23.211	2	5.8726E-15	19659	DP690-12	251.75	199.26			0.96764	1.1233	18.675	3	0	Median	123670000	61345000	62323000	13012	2434	12131	25265;25266;25267;25268	61105;61106;61107;61108;61109;61110;61111;61112;61113	61105		9	9606
SLQDTAELLSLENHPAK	1	0	Unmodified	1864.9531	0.95305639	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								17.48	17.48	3	0.00064612	11771	DP690-9	86.411	71.572			0.73498	0.92508	NaN	1	0	Median	19729000	11060000	8669400	13013	2411	12132	25269	61114;61115;61116;61117	61115		4	9606
SLQEEHVAVAQLR	0	1	Unmodified	1478.7841	0.78414057	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.8	0.748									2	2	1						13.725	13.725	2;3	2.3669E-05	7591	DP690-10	194.48	165.76			0.85887	1.0261	15.719	5	0	Median	1012499999.9999999	541410000	471120000	13014	1319	12133	25270;25271;25272;25273;25274	61118;61119;61120;61121;61122;61123;61124;61125;61126;61127;61128;61129;61130;61131;61132;61133;61134;61135	61123		18	9606
SLQEEHVAVAQLREEAER	0	2	Unmodified	2093.0501	0.050144675	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.33	0.471									2	1							14.704	14.704	3;4	0.0038984	8100	DP690-9	69.069	44.285			0.7213	0.8591	10.312	3	0	Plateau	279420000	150020000	129390000	13015	1319	12134	25275;25276;25277	61136;61137;61138;61139;61140;61141	61139		6	9606
SLQELFLAHILSPWGAEVK	1	0	Unmodified	2137.1572	0.15717593	439	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	11	0											1						23.702	23.702	3	3.0149E-06	21423	DP690-11	126.91	110.63			0.87999	1.0822	NaN	1	0	Median	19444000	10221000	9223300	13016	439	12135	25278	61142;61143;61144;61145;61146;61147	61144		6	9606
SLQFELIAAHLNPSDTEEWVR	0	1	Unmodified	2454.2179	0.21793829	2504	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	11	0											1						21.335	21.335	3	0.075441	18432	DP690-11	54.626	29.733			NaN	NaN	NaN	0	0	Median	8849900	8849900	0	13017	2504	12136	25279	61148	61148		1	9606
SLQLDIIPASIPGSEVK	1	0	Unmodified	1765.9826	0.98256561	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	6	4		1								1							20.773	20.773	2	0.00045765	14456	DP690-2	138.24	138.24			0.81773	0.89454	1.132	2	0	Median	19952000	12309000	7643700	13018	283	12137	25280;25281	61149;61150	61150		2	9606
SLQQQDVTAVPMSPSSHSPEGRPPPLLPGGPVCK	1	1	Oxidation (M)	3565.7657	0.76573667	1810	Q969S8	HDAC10	Histone deacetylase 10	yes	yes	0	1	1	4	0				1													15.478	15.478	4	1.2536E-05	9221	DP690-4	66.474	57.71			0.44113	0.50312	NaN	1	0	Median	11149000	7346600	3802000	13019	1810	12138	25282	61151;61152;61153;61154;61155	61153	2388	5	9606
SLQSLEASLHAMESTR	0	1	Oxidation (M)	1774.852	0.85196214	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	1	0	10	0										1							16.553	16.553	3	0.0097466	11707	DP690-10	62.469	37.415			0.87218	1.084	NaN	1	0	Median	85552000	51571000	33981000	13020	2424	12139	25283	61156;61157;61158;61159	61157	2858	4	9606
SLQSLEASLHAMESTR	0	1	Unmodified	1758.857	0.85704752	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							19.156	19.156	3	0.073284	15612	DP690-10	82.663	40.143			NaN	NaN	NaN	0	0	Median	23980000	23980000	0	13021	2424	12139	25284	61160	61160		1	9606
SLQSVAEER	0	1	Unmodified	1017.5091	0.50908792	949	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	8.33	5.73	1								1						1		12.42	12.42	2	0.00075785	5137	DP690-15	143.7	74.857			1.034	1.0174	NaN	1	0	Median	77413000	75354000	2059300	13022	949	12140	25285;25286;25287	61161;61162;61163;61164;61165;61166	61164		6	9606
SLRPDPNFDALISK	1	1	Unmodified	1571.8308	0.83075641	1126;1938	Q06587;Q99496	RING1;RNF2	E3 ubiquitin-protein ligase RING1;E3 ubiquitin-protein ligase RING2	no	no	0	0	1	13	0													1				17.047	17.047	3	0.053233	11516	DP690-13	42.095	22.599			1.168	1.2978	NaN	1	0	Median	131180000	64088000	67091000	13023	1126;1938	12141	25288	61167;61168	61168		2	9606
SLSAIYLEK	1	0	Unmodified	1022.5648	0.56481189	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							16.1	16.1	2	0.0089636	11202	DP690-10	90.601	48.205			0.79654	0.87952	8.5258	2	0	Median	802210000	429520000	372700000	13024	1319	12142	25289;25290	61169;61170;61171;61172;61173;61174;61175;61176	61172		8	9606
SLSDALISLQMVYPR	0	1	Oxidation (M)	1707.8866	0.88655673	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	1	0	7	4			1								1						21.788	21.788	2	3.5913E-05	17192	DP690-3	144.1	106.41			0.82624	0.95071	NaN	1	0	Median	17427000	9788800	7637800	13025	2437	12143	25291;25292	61177;61178;61179;61180;61181	61179	2884	5	9606
SLSEAPEDTSTR	0	1	Unmodified	1291.5892	0.58918874	717	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	12	0												1					11.155	11.155	2	4.677E-05	3683	DP690-12	182.39	60.062			0.77741	0.92462	NaN	1	0	Median	35463000	19784000	15679000	13026	717	12144	25293	61182;61183;61184;61185	61183		4	9606
SLSEDTDGTEEDPQAELAIIHGQMAYILQLQGR	0	1	Unmodified	3627.7363	0.73627026	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11	0											1						23.367	23.367	3	2.3731E-11	20995	DP690-11	130.69	119.27			0.78768	0.96147	NaN	1	0	Median	4970300	2547800	2422500	13027	288	12145	25294	61186	61186		1	9606
SLSELLGPYGMK	1	0	Unmodified	1293.6639	0.663874	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	11	0											1						20.027	20.027	2	0.0033503	16662	DP690-11	89.886	61.873			0.66488	0.80336	NaN	1	0	Median	46928000	30136000	16792000	13028	2437	12146	25295	61187;61188;61189	61187		3	9606
SLSELLGPYGMK	1	0	Oxidation (M)	1309.6588	0.65878863	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	1	0	3	0			1														18.78	18.78	2	0.011078	13522	DP690-3	81.338	54.665			0.71127	0.75807	NaN	1	0	Median	26771000	15062000	11709000	13029	2437	12146	25296	61190	61190	2885	1	9606
SLSEQPVMDTATATEQAK	1	0	Oxidation (M)	1921.8939	0.89388653	528	P18615	NELFE	Negative elongation factor E	yes	yes	0	1	0	13	0													1				13.503	13.503	2	3.6804E-11	6647	DP690-13	173.59	147.47			0.5423	0.63002	NaN	1	0	Median	22105000	12634000	9470100	13030	528	12147	25297	61191;61192;61193;61194	61194	679	4	9606
SLSGGASYVDFLCHMHK	1	0	Unmodified	1907.8658	0.86583806	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	11	0											3						17.62	17.62	3;4	0.0042941	13182	DP690-11	74.783	60.993			0.80437	0.979	NaN	1	0	Median	70624000	55265000	15360000	13031	883	12148	25298;25299;25300	61195;61196;61197;61198	61195		4	9606
SLSGSADENPSCGTGSER	0	1	Unmodified	1809.7435	0.7435339	1584	Q86X51	CXorf67	Uncharacterized protein CXorf67	yes	yes	0	0	0	11.2	4.26				2								1	1	3	1		10.989	10.989	2	1.1432E-59	3460	DP690-12	346.54	320.63			0.6527	0.78449	19.372	4	0	Median	90078000	52128000	37950000	13032	1584	12149	25301;25302;25303;25304;25305;25306;25307;25308	61199;61200;61201;61202;61203;61204;61205;61206;61207;61208;61209;61210;61211;61212;61213;61214;61215;61216;61217;61218;61219;61220	61201		22	9606
SLSIEIGHEVK	1	0	Unmodified	1210.6558	0.65575216	141	O15155	BET1	BET1 homolog	yes	yes	0	0	0	12	4								1								1	14.271	14.271	2	0.00045511	7632	DP690-16	114.97	83.098			0.85643	0.98939	4.7545	2	0	Median	32364000	17297000	15067000	13033	141	12150	25309;25310	61221;61222;61223;61224;61225	61223		5	9606
SLSLCNMFLDEMAK	1	0	2 Oxidation (M)	1689.7412	0.7412144	2437	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	2	0	3	0			1														18.324	18.324	2	0.0090096	13010	DP690-3	77.674	71.951			1.2938	1.369	NaN	1	0	Median	9700700	4522300	5178500	13034	2437	12151	25311	61226;61227	61226	2886;2887	2	9606
SLSLQQQQDGDNGDSSK	1	0	Unmodified	1805.8028	0.80276334	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	2.5	0.5		1	1														12.11	12.11	2	2.299E-47	4717	DP690-3	246.63	190.83			NaN	NaN	NaN	0	0	Median	6436700	0	6436700	13035	1887	12152	25312;25313	61228;61229;61230;61231	61231		4	9606
SLSNATIINEEVLNAMLK	1	0	Oxidation (M)	1975.0296	0.029592154	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	1	0	13	0													1				19.606	19.606	2	0.00051091	14940	DP690-13	108.23	108.23			0.77298	0.89736	NaN	1	0	Median	20466000	11585000	8880800	13036	934	12153	25314	61232;61233;61234;61235	61234	1453	4	9606
SLSNATIINEEVLNAMLK	1	0	Unmodified	1959.0347	0.034677532	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	13	0													1				22.558	22.558	2	0.017952	18591	DP690-13	77.078	62.835			0.97805	1.0805	NaN	1	0	Median	2717100	1132100	1585000	13037	934	12153	25315	61236	61236		1	9606
SLSQIHEAAVR	0	1	Unmodified	1209.6466	0.64658446	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	10	0										1							11.424	11.424	3	0.0055996	4350	DP690-10	73.9	39.814			0.8475	1.0467	NaN	1	0	Median	122070000	67324000	54748000	13038	2276	12154	25316	61237;61238	61238		2	9606
SLSSPTVTLSAPLEGAK	1	0	Unmodified	1656.8934	0.89341625	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	3	0			1														17.659	17.659	2	0.00030836	12145	DP690-3	109.6	109.6			1.0726	1.1487	NaN	1	0	Median	14993000	6936400	8056200	13039	1911	12155	25317	61239;61240;61241;61242	61239		4	9606
SLSSSLDDTEVK	1	0	Unmodified	1279.6143	0.61434085	313	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	0	15	0															1		14.452	14.452	2	3.9906E-05	8014	DP690-15	128.81	95.548			0.67503	0.78225	NaN	1	0	Median	46790000	26771000	20019000	13040	313	12156	25318	61243;61244;61245;61246	61245		4	9606
SLSSSLDDTEVKK	2	0	Unmodified	1407.7093	0.70930387	313	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	1	15	0															2		12.532	12.532	2;3	9.6305E-06	5415	DP690-15	168.98	134.72			0.78469	0.89897	2.5461	2	0	Median	237500000	131330000	106180000	13041	313	12157	25319;25320	61247;61248;61249;61250;61251;61252;61253;61254;61255;61256;61257;61258;61259	61250		13	9606
SLSSSVLPPSYASDR	0	1	Unmodified	1564.7733	0.77330111	1495	Q6P6C2	ALKBH5	RNA demethylase ALKBH5	yes	yes	0	0	0	13	0													1				16.083	16.083	2	0.00090185	10314	DP690-13	99.752	70.796			0.63046	0.7729	NaN	1	0	Median	31003000	16741000	14263000	13042	1495	12158	25321	61260	61260		1	9606
SLTATGGNHVTAR	0	1	Unmodified	1283.6582	0.65821178	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	6.8	3.92		2								3							10.36	10.36	2;3	1.8213E-05	2323	DP690-2	181.68	123.09			1.0781	1.1246	20.455	3	0	Median	921020000	636800000	284220000	13043	1270	12159	25322;25323;25324;25325;25326	61261;61262;61263;61264;61265;61266;61267;61268;61269	61265		9	9606
SLTGLLSSFVEVESIKR	1	1	Unmodified	1864.0306	0.030578432	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	1	2	0		1															22.259	22.259	3	0.028111	16017	DP690-2	71.781	36.124			NaN	NaN	NaN	0	0	Median	345140	0	345140	13044	1437	12160	25327	61270	61270		1	9606
SLTLEALLEK	1	0	Unmodified	1115.6438	0.64379049	1513	Q6YHU6	THADA	Thyroid adenoma-associated protein	yes	yes	0	0	0	2	0		1															20.462	20.462	2	0.011528	14050	DP690-2	81.525	49.591			1.2818	1.2615	NaN	1	0	Median	1980700	860950	1119800	13045	1513	12161	25328	61271;61272	61271		2	9606
SLTMHSIHNSQQPR	0	1	Unmodified	1634.7947	0.79472203	1588	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	12	0												1					10.411	10.411	3	0.00039188	2723	DP690-12	104.81	93.951			NaN	NaN	NaN	0	0	Median	26090000	14779000	11311000	13046	1588	12162	25329	61273	61273		1	9606
SLTNDWEDHLAVK	1	0	Unmodified	1526.7365	0.73652168	416;409	P07900;P08238	HSP90AA1;HSP90AB1	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta	no	no	0	0	0	5.67	3.77			2								1						16.596	16.596	2;3	1.5492E-05	10735	DP690-3	183.85	146.16			0.93209	1.0057	1.5437	3	0	Plateau	479850000	243330000	236520000	13047	409;416	12163	25330;25331;25332	61274;61275;61276;61277;61278;61279;61280;61281;61282;61283;61284	61284		11	9606
SLTNSETEMVQQTQSLR	0	1	Oxidation (M)	1966.9266	0.92658365	2062	Q9C035	TRIM5	Tripartite motif-containing protein 5	yes	yes	0	1	0	8	4				1								1					14.146	14.146	2	5.2278000000000004E-24	7412	DP690-4	269.14	239			0.77168	0.91456	12.941	2	0	Median	25734000	14593000	11141000	13048	2062	12164	25333;25334	61285;61286;61287;61288;61289;61290;61291	61289	2583	7	9606
SLTQMEDVLK	1	0	Oxidation (M)	1178.5853	0.58528933	2266	Q9NYP9	MIS18A	Protein Mis18-alpha	yes	yes	0	1	0	15	0															1		14.119	14.119	2	0.027321	7523	DP690-15	90.601	28.493			NaN	NaN	NaN	0	0	Median	17225000	0	17225000	13049	2266	12165	25335	61292;61293	61292	2720	2	9606
SLTQVYESK	1	0	Unmodified	1053.5342	0.53424004	1211	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	2	0		1															13.1	13.1	2	0.061719	5461	DP690-2	63.816	28.521			0.76136	0.76357	NaN	1	0	Median	5053700	2789000	2264700	13050	1211	12166	25336	61294	61294		1	9606
SLTTLSEQWIILR	0	1	Unmodified	1558.8719	0.87189295	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									2								21.811	21.811	2	0.01121	17074	DP690-9	106.62	67.814			NaN	NaN	NaN	0	0	Median	4017600	0	4017600	13051	2217	12167	25337;25338	61295;61296;61297	61297		3	9606
SLTVSDDAESSEPER	0	1	Unmodified	1620.7115	0.71148872	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	9	0									1								13.101	13.101	2	0.031138	5981	DP690-9	95.401	62.172			NaN	NaN	NaN	0	0	Median	0	0	0	13052	1696	12168	25339	61298	61298		1	9606
SLTYLSILR	0	1	Unmodified	1064.623	0.62299547	438	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	11	4							1								1		19.652	19.652	2	1.3613E-05	14081	DP690-7	180.93	170.46			0.88971	0.96081	8.4033	2	0	Median	264010000	139210000	124800000	13053	438	12169	25340;25341	61299;61300;61301;61302;61303;61304;61305;61306;61307;61308;61309	61309		11	9606
SLVALALIFAIQK	1	0	Unmodified	1385.8646	0.86462272	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							25.186	25.186	2	0.00296	23311	DP690-10	123.88	70.39			NaN	NaN	NaN	0	0	Median	0	0	0	13054	2424	12170	25342	61310	61310		1	9606
SLVALLVETQMK	1	0	Oxidation (M)	1346.7479	0.74793799	1710;1796	Q8TAQ2;Q92922	SMARCC2;SMARCC1	SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1	no	no	0	1	0	10	0										1							20.029	20.029	2	0.00050391	16748	DP690-10	118.4	58.977			0.85132	1.0508	NaN	1	0	Median	113840000	61514000	52324000	13055	1710;1796	12171	25343	61311;61312;61313	61311	2303	3	9606
SLVASLAEPDFVVTDFAK	1	0	Unmodified	1907.988	0.98804492	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														22.35	22.35	2	3.3727E-13	17835	DP690-3	188.96	148.95			0.89393	0.95424	NaN	1	0	Median	25205000	12598000	12607000	13056	561	12172	25344	61314;61315;61316;61317	61315		4	9606
SLVDLTAVDVPTR	0	1	Unmodified	1384.7562	0.75619449	258	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	15	0															3		19.104	19.104	2	6.6883E-07	14083	DP690-15	164.65	84.486			NaN	NaN	NaN	0	0	Median	7240700	0	7240700	13057	258	12173	25345;25346;25347	61318;61319;61320;61321	61319		4	9606
SLVEIIEHGLVDEQQK	1	0	Unmodified	1835.9629	0.9628928	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	10	0.707									1	2	1						21.037	21.037	2;3	6.4178E-12	18131	DP690-10	187.74	145.65			0.84863	0.99141	1.0514	3	0	Plateau	387560000	227840000	159720000	13058	263	12174	25348;25349;25350;25351	61322;61323;61324;61325;61326;61327;61328;61329;61330;61331;61332;61333;61334;61335;61336;61337	61327		16	9606
SLVGGLLQSK	1	0	Unmodified	1000.5917	0.59169534	867	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	11	0											1						17.169	17.169	2	0.0085223	12577	DP690-11	85.731	70.47			0.94912	1.1506	NaN	1	0	Median	71421000	38407000	33014000	13059	867	12175	25352	61338;61339	61338		2	9606
SLVGLGGTK	1	0	Unmodified	830.48617	0.48616764	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	9	5.18	1						1	1					1			1	13.454	13.454	2	0.0091229	5297	DP690-1	115.49	48.459		+	NaN	NaN	NaN	0	0	Median	159830000	159830000	0	13060	44	12176	25353;25354;25355;25356;25357	61340;61341;61342;61343;61344;61345;61346;61347;61348	61341		9	9606
SLVHAGVPASYLLIPAASYVLPEVSK	1	0	Unmodified	2680.484	0.48398938	2350	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	12	0												1					22.346	22.346	3	0.00013449	18717	DP690-12	96.133	88.411			0.84462	1.0214	NaN	1	0	Median	14271000	8204300	6066400	13061	2350	12177	25358	61349;61350;61351;61352	61350		4	9606
SLVIPEKFQHILR	1	1	Acetyl (Protein N-term)	1620.9352	0.9351619	973	P62269	RPS18	40S ribosomal protein S18	yes	yes	1	0	1	16	0																3	19.6	19.6	2;3	0.0002675	14200	DP690-16	101.97	79.288			0.96313	1.1216	NaN	1	0	Median	34744000	20089000	14655000	13062	973	12178	25359;25360;25361	61353;61354;61355;61356;61357;61358	61353		6	9606
SLVNLGGSK	1	0	Unmodified	873.49198	0.4919813	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	10.7	1.7									1	1			1				13.762	13.762	2	0.016674	6632	DP690-9	125.31	47.94		+	NaN	NaN	NaN	0	0	Median	217630000	217630000	0	13063	369	12179	25362;25363;25364	61359;61360;61361;61362;61363	61363		5	9606
SLVPAAELLESR	0	1	Unmodified	1283.7085	0.70851601	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								19.13	19.13	2	0.00025715	13872	DP690-9	144.77	99.746			0.75616	0.83943	NaN	1	0	Median	139310000	80143000	59169000	13064	1319	12180	25365	61364;61365;61366	61365		3	9606
SLVPDALER	0	1	Unmodified	998.53966	0.53965977	2076	Q9GZT4	SRR	Serine racemase	yes	yes	0	0	0	6	0						1											16.256	16.256	2	0.0065795	9633	DP690-6	93.429	60.588			0.51445	0.59065	NaN	1	0	Median	9768500	6193500	3575000	13065	2076	12181	25366	61367;61368	61367		2	9606
SLVQEMVGSFGK	1	0	Unmodified	1280.6435	0.64347291	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							20.411	20.411	2	0.00011381	17377	DP690-10	124.67	94.056			0.92055	1.1355	NaN	1	0	Median	93643000	49616000	44027000	13066	269	12182	25367	61369;61370;61371	61371		3	9606
SLYASSPGGVYATR	0	1	Unmodified	1427.7045	0.70449327	424	P08670	VIM	Vimentin	yes	yes	0	0	0	13	3.21				1					1			2	1	4	1	3	14.668	14.668	2	1.0329E-08	8384	DP690-12	196.16	163.74			0.79717	0.86815	28.547	6	0	Median	4402400000	2393200000	2009199999.9999998	13067	424	12183	25368;25369;25370;25371;25372;25373;25374;25375;25376;25377;25378;25379;25380	61372;61373;61374;61375;61376;61377;61378;61379;61380;61381;61382;61383;61384;61385;61386;61387;61388;61389;61390;61391;61392;61393;61394;61395;61396;61397;61398;61399	61372		28	9606
SLYDEVAAQGEVVR	0	1	Unmodified	1534.7627	0.76273643	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	10	0										1							17.962	17.962	2	4.326E-05	13802	DP690-10	141.89	141.89			0.94318	1.1687	NaN	1	0	Median	101350000	47430000	53919000	13068	408	12184	25381	61400;61401	61401		2	9606
SLYHDISGDTSGDYRK	1	1	Unmodified	1812.8279	0.82785588	828	P50995	ANXA11	Annexin A11	yes	yes	0	0	1	4	0				1													12.966	12.966	3	0.013485	5898	DP690-4	82.663	57.082			NaN	NaN	NaN	0	0	Median	6699700	6699700	0	13069	828	12185	25382	61402;61403	61403		2	9606
SLYQSAGVAPESFEYIEAHGTGTK	1	0	Unmodified	2541.2023	0.2023478	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.33	0.471		2	1														18.081	18.081	2;3	1.9425E-37	11353	DP690-2	214.52	203.38			0.82407	0.83979	16.498	3	0	Plateau	136460000	75626000	60832000	13070	789	12186	25383;25384;25385	61404;61405;61406;61407;61408;61409;61410	61407		7	9606
SLYVAEYHSEPVEDEKP	1	0	Unmodified	1990.916	0.91600218	589	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	1	12	0												2					14.798	14.798	2	0.020392	8685	DP690-12	139.48	101.48			NaN	NaN	NaN	0	0	Median	0	0	0	13071	589	12187	25386;25387	61411;61412	61411		2	9606
SLYYYIQQDTK	1	0	Unmodified	1420.6874	0.68744622	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	12.9	2.46						1	1	1	1	3				22	1	1	21.362	21.362	2	2.576E-06	11730	DP690-15	209.73	175.81			0.90401	0.81725	9.915	14	0	Linear	14822000000	7806999999.999999	7014999999.999999	13072	404	12188	25388;25389;25390;25391;25392;25393;25394;25395;25396;25397;25398;25399;25400;25401;25402;25403;25404;25405;25406;25407;25408;25409;25410;25411;25412;25413;25414;25415;25416;25417;25418	61413;61414;61415;61416;61417;61418;61419;61420;61421;61422;61423;61424;61425;61426;61427;61428;61429;61430;61431;61432;61433;61434;61435;61436;61437;61438;61439;61440;61441;61442;61443;61444;61445;61446;61447;61448;61449;61450;61451;61452;61453;61454;61455;61456;61457;61458;61459;61460;61461;61462;61463;61464;61465;61466;61467;61468;61469;61470;61471;61472;61473;61474;61475;61476;61477	61457		65	9606
SLYYYIQQDTKGDYQK	2	0	Unmodified	2011.9527	0.95272204	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	12.1	3.35						2			3					6	2	1	16.35	16.35	2;3	3.4239E-39	9785	DP690-14	325.68	267			0.82226	0.94072	8.0289	11	0	Median	9615800000	5144200000	4471700000	13073	404	12189	25419;25420;25421;25422;25423;25424;25425;25426;25427;25428;25429;25430;25431;25432	61478;61479;61480;61481;61482;61483;61484;61485;61486;61487;61488;61489;61490;61491;61492;61493;61494;61495;61496;61497;61498;61499;61500;61501;61502;61503;61504	61478		25	9606
SMAASGNLGHTPFVDEL	0	0	Oxidation (M)	1760.8039	0.80394931	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	14.5	1.12													1	1	1	1	18.637	18.637	2	1.8325E-08	13487	DP690-13	174.21	136.61			NaN	NaN	NaN	0	0	Median	0	0	0	13074	565	12190	25433;25434;25435;25436	61505;61506;61507;61508;61509;61510;61511	61505	743	7	9606
SMAASGNLGHTPFVDEL	0	0	Unmodified	1744.809	0.80903469	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13	0													1				19.344	19.344	2	5.7482E-36	14499	DP690-13	232.78	190.56			NaN	NaN	NaN	0	0	Median	0	0	0	13075	565	12190	25437	61512;61513	61512		2	9606
SMDAETYVEGQR	0	1	Oxidation (M)	1400.5878	0.58780853	895	P55196	MLLT4	Afadin	yes	yes	0	1	0	10	0										1							13.239	13.239	2	0.00011051	6932	DP690-10	129.85	118.69			0.69819	0.87361	NaN	1	0	Median	36634000	24689000	11945000	13076	895	12191	25438	61514;61515;61516;61517;61518;61519;61520	61515	1377	7	9606
SMEAEMIQLQEELAAAER	0	1	2 Oxidation (M)	2079.9453	0.94527018	668	P35579	MYH9	Myosin-9	yes	yes	0	2	0	2	0		1															18.629	18.629	2	3.0835E-29	11922	DP690-2	230.69	189.64			1.1231	1.1737	NaN	1	0	Median	11004000	5222200	5781400	13077	668	12192	25439	61521;61522;61523;61524	61521	964;965	4	9606
SMEAEMIQLQEELAAAER	0	1	Oxidation (M)	2063.9504	0.95035556	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															20.18	20.18	2	0.00040288	13727	DP690-2	131.08	108.75			NaN	NaN	NaN	0	0	Median	892290	0	892290	13078	668	12192	25440	61525;61526	61526	964;965	2	9606
SMEASVDVSAPK	1	0	Oxidation (M)	1235.5704	0.57036755	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	1	0	9	0									1								12.002	12.002	2	0.039543	4611	DP690-9	69.979	49.078			0.50561	0.63847	NaN	1	0	Median	6688600	4227900	2460800	13079	1602	12193	25441	61527	61527	2261	1	9606
SMENAAPSQDTDSPLSAASSSR	0	1	Oxidation (M)	2223.955	0.95498324	329	O95568	METTL18	Histidine protein methyltransferase 1 homolog	yes	yes	0	1	0	13	0													2				13.838	13.838	2	1.8314E-13	7107	DP690-13	185.74	148.89			NaN	NaN	NaN	0	0	Median	0	0	0	13080	329	12194	25442;25443	61528;61529	61528	342	2	9606
SMENYYQESGR	0	1	Oxidation (M)	1378.5459	0.54594371	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	1	0	9.91	3.2			1	1					1	1	2	4	1				11.755	11.755	2	3.7432E-05	4038	DP690-12	188.91	167.46			0.87694	1.0406	13.09	6	0	Median	447180000	236390000	210790000	13081	751	12195	25444;25445;25446;25447;25448;25449;25450;25451;25452;25453;25454	61530;61531;61532;61533;61534;61535;61536;61537;61538;61539;61540;61541;61542;61543;61544;61545;61546;61547;61548;61549;61550;61551;61552;61553;61554	61536	1112	25	9606
SMENYYQESGR	0	1	Unmodified	1362.551	0.55102909	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	8	4				1								1					13.434	13.434	2	0.00013706	6469	DP690-4	137.46	118.49			0.81012	0.93358	23.367	2	0	Median	167190000	85122000	82066000	13082	751	12195	25455;25456	61555;61556;61557;61558;61559;61560	61559		6	9606
SMEVSTQLAR	0	1	Oxidation (M)	1136.5496	0.54957253	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	1	0	10	0										1							11.76	11.76	2	0.016185	4744	DP690-10	83.998	50.999			0.83227	1.0344	NaN	1	0	Median	85410000	50542000	34867000	13083	2424	12196	25457	61561;61562	61562	2859	2	9606
SMFCNLEPVLVQLIHSVNR	0	1	Unmodified	2255.1555	0.15547814	1540	Q7Z3J2	C16orf62	UPF0505 protein C16orf62	yes	yes	0	0	0	11	0											1						24.574	24.574	3	0.0053292	22398	DP690-11	60.334	60.334			1.8475	2.2262	NaN	1	0	Median	3621500	1318500	2303100	13084	1540	12197	25458	61563	61563		1	9606
SMFCNLEPVLVQLIHSVNR	0	1	Oxidation (M)	2271.1504	0.15039277	1540	Q7Z3J2	C16orf62	UPF0505 protein C16orf62	yes	yes	0	1	0	11	0											1						23.306	23.306	3	0.0098152	20929	DP690-11	86.222	58.139			NaN	NaN	NaN	0	0	Median	2500600	2500600	0	13085	1540	12197	25459	61564;61565	61565	2218	2	9606
SMLDKGESSCPVCR	1	1	Oxidation (M)	1640.6957	0.69566119	2062	Q9C035	TRIM5	Tripartite motif-containing protein 5	yes	yes	0	1	1	4	0				1													10.414	10.414	3	0.051746	2800	DP690-4	47.774	42.114			0.71973	0.82087	NaN	1	0	Median	15053000	8828000	6225400	13086	2062	12198	25460	61566	61566		1	9606
SMLPEGVEMYR	0	1	Unmodified	1310.5999	0.59989354	1825	Q96BF6	NACC2	Nucleus accumbens-associated protein 2	yes	yes	0	0	0	12	0												1					20.048	20.048	2	0.0013612	15943	DP690-12	103.56	45.974			0.7777	0.94368	NaN	1	0	Median	14222000	7904900	6317600	13087	1825	12199	25461	61567;61568;61569	61569		3	9606
SMMQDREDQSILCTGESGAGK	1	1	Oxidation (M)	2314.9828	0.98279467	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	6	4		1								1							13.806	13.806	3	5.5992E-05	6309	DP690-2	114.55	107.28			1.0086	1.1102	10.693	2	0	Median	41822000	22163000	19659000	13088	668	12200	25462;25463	61570;61571;61572;61573;61574;61575;61576;61577	61575	966;967	8	9606
SMMQDREDQSILCTGESGAGK	1	1	2 Oxidation (M)	2330.9777	0.97770929	668	P35579	MYH9	Myosin-9	yes	yes	0	2	1	5	3.56		1	1							1							13.16	13.16	3	7.8457E-16	5481	DP690-2	175.77	160.98			1.1145	1.0971	NaN	1	0	Median	66000000	40993000	25007000	13089	668	12200	25464;25465;25466	61578;61579;61580;61581;61582;61583;61584	61583	966;967	7	9606
SMPIRKDDEVQVVR	1	2	Oxidation (M)	1686.8723	0.87230365	947	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	1	2	15.5	0.5															1	1	10.511	10.511	3	0.0010895	2930	DP690-15	89.26	72.69			0.91311	0.95715	5.7886	2	0	Median	209060000	106040000	103020000	13090	947	12201	25467;25468	61585;61586;61587;61588	61585	1467	4	9606
SMPPLDQPSCK	1	0	Oxidation (M)	1274.5635	0.56350803	1964	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	1	0	5	0					1												10.718	10.718	2	0.01188	3157	DP690-5	83.998	74.202			0.52655	0.52795	NaN	1	0	Median	7798400	5303700	2494700	13091	1964	12202	25469	61589	61589	2511	1	9606
SMVEEGTGLR	0	1	Oxidation (M)	1093.5074	0.50737336	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	6	4		1								1							11.099	11.099	2	0.00068956	3813	DP690-10	121.09	63.811			0.97154	1.0761	8.7829	2	0	Median	201040000	100340000	100710000	13092	1319	12203	25470;25471	61590;61591;61592;61593;61594;61595;61596	61590	2035	7	9606
SMVPVQVQLDVPVVK	1	0	Oxidation (M)	1652.9171	0.91712858	531	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	1	0	13	0													1				18.581	18.581	2	0.0062072	13641	DP690-13	82.362	54.953			0.63138	0.72476	NaN	1	0	Median	92318000	53650000	38668000	13093	531	12204	25472	61597;61598	61598	684	2	9606
SMYEEEINETR	0	1	Oxidation (M)	1415.5875	0.58747418	544	P20700	LMNB1	Lamin-B1	yes	yes	0	1	0	12	0												1					13.258	13.258	2	6.5531E-05	6430	DP690-12	182.64	126.38			0.73729	0.8668	NaN	1	0	Median	88321000	51784000	36537000	13094	544	12205	25473	61599;61600;61601;61602;61603	61599	698	5	9606
SMYEEEINETR	0	1	Unmodified	1399.5926	0.59255956	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	12	0												1					14.396	14.396	2	2.6871E-06	8122	DP690-12	205.83	166.86			0.74586	0.88698	NaN	1	0	Median	70359000	37822000	32536000	13095	544	12205	25474	61604;61605;61606;61607	61604		4	9606
SNAHYNLQNAFNLAEQHLGLTK	1	0	Unmodified	2482.2353	0.23531968	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							19.717	19.717	3	0.072908	16368	DP690-10	50.891	18.38			NaN	NaN	NaN	0	0	Median	19715000	19715000	0	13096	1080	12206	25475	61608	61608		1	9606
SNAQRQDIAFAYQR	0	2	Unmodified	1666.8176	0.81756596	404	P07355	ANXA2	Annexin A2	yes	yes	0	0	1	14	0														1			13.423	13.423	3	0.034002	6722	DP690-14	82.483	63.65			0.65332	0.76775	NaN	1	0	Median	48924000	30258000	18667000	13097	404	12207	25476	61609	61609		0	9606
SNASTLESHETEEPAAK	1	0	Unmodified	1799.8174	0.81735077	2358	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	6.67	3.77				2								1					10.727	10.727	2;3	7.1993E-08	3131	DP690-4	159.4	127.48			0.98718	1.1245	34.754	3	0	Plateau	93781000	49518000	44263000	13098	2358	12208	25477;25478;25479	61610;61611;61612;61613;61614;61615;61616;61617;61618	61616		9	9606
SNAYHFPDEPYKDGYIR	1	1	Unmodified	2070.9436	0.94355434	2224	Q9NUQ7	UFSP2	Ufm1-specific protease 2	yes	yes	0	0	1	13	0													1				15.354	15.354	3	1.3766E-05	9229	DP690-13	125.61	108.32			0.57379	0.66478	NaN	1	0	Median	68474000	40620000	27855000	13099	2224	12209	25480	61619;61620	61619		2	9606
SNDEEAFTFAR	0	1	Unmodified	1285.5575	0.55749468	666	P35520	CBS	Cystathionine beta-synthase	yes	yes	0	0	0	4	0				1													16.341	16.341	2	2.5512E-06	10293	DP690-4	246.93	212.55			0.92556	0.97138	NaN	1	0	Median	124620000	61707000	62912000	13100	666	12210	25481	61621;61622;61623;61624;61625;61626	61625		6	9606
SNDIDLEGFDSVVSSTEK	1	0	Unmodified	1940.8851	0.88509599	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	13	0													1				20.071	20.071	2	3.2258E-33	15478	DP690-13	273.99	247.28			0.92379	1.0663	NaN	1	0	Median	77394000	41459000	35935000	13101	1823	12211	25482	61627;61628;61629;61630	61627		4	9606
SNDPAISAMDQGQPAVK	1	0	Unmodified	1727.8148	0.81484835	2544				yes	yes	0	0	0	13	0													1				19.848	19.848	2	0.029003	15303	DP690-13	57.885	35.104	+		0.92578	0.983	NaN	1	0	Median	696060000	373840000	322220000	13102	2544	12212	25483	61631	61631		1	9606
SNDPAISAMDQGQPAVK	1	0	Oxidation (M)	1743.8098	0.80976297	2544				yes	yes	0	1	0	13	0													1				20.237	20.237	2	0.026251	15716	DP690-13	65.695	45.265	+		0.90384	1.0464	NaN	1	0	Median	44838000	23834000	21003000	13103	2544	12212	25484	61632	61632	2971	1	9606
SNDPQMVAENFVPPLLDAVLIDYQR	0	1	Oxidation (M)	2859.4113	0.41129472	128	O14980	XPO1	Exportin-1	yes	yes	0	1	0	11	0											1						26.589	26.589	2	5.3312E-06	24642	DP690-11	129.11	129.11			0.40523	0.46743	NaN	1	0	Median	1238900	807780	431080	13104	128	12213	25485	61633	61633	147	1	9606
SNDPVATAFAEMLK	1	0	Unmodified	1492.7232	0.7231798	2264	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	0	14	0														1			22.634	22.634	2	3.8757E-05	18851	DP690-14	171.67	152.4			0.8565	1.0196	NaN	1	0	Median	16832000	9106200	7725500	13105	2264	12214	25486	61634;61635;61636;61637	61636		4	9606
SNDSETSSVAQSGSESK	1	0	Unmodified	1698.718	0.71803066	446	P0DJD0;P0DJD1	RGPD1;RGPD2	RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	yes	no	0	0	0	10	0										1							10.48	10.48	2	1.7097E-34	2897	DP690-10	262.07	233.9			NaN	NaN	NaN	0	0	Median	0	0	0	13106	446	12215	25487	61638	61638		1	9606
SNEDQSMGNWQIK	1	0	Oxidation (M)	1551.6624	0.66237045	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	1	0	11.3	0.471											2	1					13.839	13.839	2	9.6783E-10	7228	DP690-12	237.84	214.32			0.85575	1.0351	9.8646	3	0	Median	226060000	129510000	96548000	13107	359	12216	25488;25489;25490	61639;61640;61641;61642;61643;61644;61645;61646;61647;61648;61649;61650	61647	373	12	9606
SNEDQSMGNWQIK	1	0	Unmodified	1535.6675	0.66745583	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.5	0.5											1	1					15.934	15.934	2	4.1167E-08	10724	DP690-11	199.03	155.73			0.85158	1.0185	28.624	2	0	Median	159020000	82017000	77003000	13108	359	12216	25491;25492	61651;61652;61653;61654;61655;61656	61651		6	9606
SNEEEETSDSSLEK	1	0	Unmodified	1582.6482	0.64821976	323	O95425	SVIL	Supervillin	yes	yes	0	0	0	10.5	0.5										1	1						11.203	11.203	2	5.0271E-17	3961	DP690-10	280.38	235.63			0.82122	1.0136	NaN	1	0	Median	56777000	32178000	24599000	13109	323	12217	25493;25494	61657;61658;61659;61660;61661	61658		5	9606
SNEILTAIIQGMR	0	1	Unmodified	1444.7708	0.77079869	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	11	0											5						22.912	22.912	2	1.4153E-09	20201	DP690-11	215.06	84.407			NaN	NaN	NaN	0	0	Median	8219900	8219900	0	13110	1300	12218	25495;25496;25497;25498;25499	61662;61663;61664;61665;61666	61663		5	9606
SNELFTTFR	0	1	Unmodified	1113.5455	0.54547343	2222	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	12	0												1					17.587	17.587	2	0.003039	12619	DP690-12	107.69	61.975			0.99781	1.1861	NaN	1	0	Median	36293000	18207000	18087000	13111	2222	12219	25500	61667;61668	61667		2	9606
SNESVDIQDQEEK	1	0	Unmodified	1519.6638	0.66381024	1446	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	10	0										2							12.301	12.301	2	0.0028393	5540	DP690-10	139.31	104.13			NaN	NaN	NaN	0	0	Median	0	0	0	13112	1446	12220	25501;25502	61669;61670	61669		2	9606
SNFAEALAAHK	1	0	Unmodified	1157.5829	0.58292157	402	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	4	0				1													13.837	13.837	2	0.0088351	7013	DP690-4	80.755	46.569			1.1084	1.2044	NaN	1	0	Median	23374000	10265000	13109000	13113	402	12221	25503	61671;61672	61672		2	9606
SNFKPSLLAQK	2	0	Unmodified	1231.6925	0.69247202	1836	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	1	13	0													1				13.216	13.216	3	0.044323	6235	DP690-13	53.013	53.013			1.3262	1.4942	NaN	1	0	Median	46528000	23776000	22752000	13114	1836	12222	25504	61673;61674	61674		2	9606
SNFSLAILNVGAPAAGMNAAVR	0	1	Oxidation (M)	2159.1157	0.11572182	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	1	0	3	0			1														20.671	20.671	2	2.3064E-15	15966	DP690-3	176.91	176.91			0.92667	1.0629	NaN	1	0	Median	15647000	7944700	7702200	13115	518	12223	25505	61675;61676;61677;61678	61678	661	4	9606
SNFSNSADDIK	1	0	Unmodified	1196.5309	0.53094558	745	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	15	0															1		12.339	12.339	2	0.039868	5199	DP690-15	65.627	34.34			0.89813	1.0601	NaN	1	0	Median	24824000	11444000	13381000	13116	745	12224	25506	61679	61679		1	9606
SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR	0	1	Unmodified	3523.708	0.7080221	1045	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	14	0														1			17.689	17.689	4	0.062664	12639	DP690-14	38.453	21.852			NaN	NaN	NaN	0	0	Median	28215000	28215000	0	13117	1045	12225	25507	61680	61680		1	9606
SNGYEDHMAEDCR	0	1	Acetyl (Protein N-term);Oxidation (M)	1640.5831	0.58313386	1346	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	1	1	0	14	0														2			10.997	10.997	2	0.0030716	3434	DP690-14	96.067	91.985			NaN	NaN	NaN	0	0	Median	0	0	0	13118	1346	12226	25508;25509	61681;61682	61681	2090	2	9606
SNGYEDHMAEDCRGDIGR	0	2	Acetyl (Protein N-term)	2122.8433	0.84326472	1346	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	1	0	1	14	0														1			13.695	13.695	3	0.00027393	7040	DP690-14	94.339	94.339			0.86728	1.0192	NaN	1	0	Median	90261000	43784000	46477000	13119	1346	12227	25510	61683;61684	61683		2	9606
SNIHSSVMASPGGLSAVR	0	1	Oxidation (M)	1784.8839	0.88393097	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	1	0	11	2.1									1	2	1				1		12.868	12.868	2;3	2.7753E-09	6381	DP690-10	148.7	118.77			0.88164	1.0219	18.218	3	0	Median	463270000	258040000	205230000	13120	2190	12228	25511;25512;25513;25514;25515	61685;61686;61687;61688;61689;61690;61691;61692;61693;61694;61695;61696	61689	2670	12	9606
SNIHSSVMASPGGLSAVR	0	1	Unmodified	1768.889	0.88901635	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.7	0.471										1	2						14.059	14.059	3	1.3029E-05	8136	DP690-10	124.98	104.27			0.9237	1.0869	NaN	1	0	Median	384860000	205970000	178890000	13121	2190	12228	25516;25517;25518	61697;61698;61699;61700;61701	61698		5	9606
SNILLLGPTGSGK	1	0	Unmodified	1255.7136	0.71360139	287	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	12	0												1					17.262	17.262	2	0.033714	12326	DP690-12	64.945	51.252			0.64179	0.76746	NaN	1	0	Median	33804000	20194000	13610000	13122	287	12229	25519	61702	61702		1	9606
SNILSHSYCLHQDVMK	1	0	Oxidation (M)	1946.8979	0.89786647	1716	Q8TCB6	OR51E1	Olfactory receptor 51E1	yes	yes	0	1	0	7	0							1										13.197	13.197	2	0.028841	6144	DP690-7	87.568	43.61			NaN	NaN	NaN	0	0	Median	5773500	5773500	0	13123	1716	12230	25520	61703;61704	61703	2305	2	9606
SNLAYDIVQLPTGLTGIK	1	0	Unmodified	1902.0462	0.046228496	654	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	3	0			1														22.11	22.11	2	0.00018021	17693	DP690-3	115.06	115.06			1.8971	1.9797	NaN	1	0	Median	2675800	1034800	1641000	13124	654	12231	25521	61705;61706	61705		2	9606
SNLGSVVLQLK	1	0	Unmodified	1156.6816	0.68157298	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	3	0			2														18.164	18.164	2	0.026937	12794	DP690-3	94.692	45.156			NaN	NaN	NaN	0	0	Median	0	0	0	13125	161	12232	25522;25523	61707;61708	61707		2	9606
SNLMDAISFVLGEK	1	0	Oxidation (M)	1538.765	0.76504461	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	1	0	10	0										1							23.576	23.576	2	0.0014021	21131	DP690-10	102.97	78.738			0.83116	1.0204	NaN	1	0	Median	33185000	18193000	14992000	13126	1285	12233	25524	61709;61710;61711;61712	61709	1973	4	9606
SNLMDAISFVLGEK	1	0	Unmodified	1522.7701	0.77012999	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10.2	0.433										3	1						25.701	25.701	2	0.00087072	23884	DP690-10	102.62	82.317			0.87699	1.0629	33.573	3	0	Plateau	12955000	7903000	5051500	13127	1285	12233	25525;25526;25527;25528	61713;61714;61715;61716;61717;61718	61715		6	9606
SNLNSLDEQEGVK	1	0	Unmodified	1431.6842	0.68415175	244	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	7.67	0.471							1	2									13.418	13.418	2	9.6342E-10	6375	DP690-7	243.91	206.72			0.69575	0.74426	NaN	1	0	Median	74323000	43448000	30875000	13128	244	12234	25529;25530;25531	61719;61720;61721;61722;61723;61724;61725	61719		7	9606
SNLVISDPIPGAKPLPVPPELAPFVGR	1	1	Unmodified	2779.5636	0.56363668	2423	Q9UQB8	BAIAP2	Brain-specific angiogenesis inhibitor 1-associated protein 2	yes	yes	0	0	1	12	0												1					22.301	22.301	3	6.012E-05	18630	DP690-12	80.02	80.02			0.36019	0.4356	NaN	1	0	Median	4105900	2998900	1107000	13129	2423	12235	25532	61726	61726		1	9606
SNMDNMFESYINNLR	0	1	2 Oxidation (M)	1878.7876	0.78764732	38	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	2	0	13	0													1				19.396	19.396	2	1.6731E-05	14637	DP690-13	136.93	108.03		+	0.83051	1.0118	NaN	1	0	Median	43517000	23402000	20115000	13130	38	12236	25533	61727;61728;61729;61730	61727	41;42	4	9606
SNMGHPEPASGLAALAK	1	0	Oxidation (M)	1665.8145	0.81445442	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	2	0		2															13.868	13.868	2;3	4.7539E-05	6286	DP690-2	120.77	92.484			0.72134	0.72937	0.26343	2	0	Median	82209000	46304000	35905000	13131	789	12237	25534;25535	61731;61732;61733;61734;61735	61734	1187	5	9606
SNMGHPEPASGLAALAK	1	0	Unmodified	1649.8195	0.8195398	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															14.558	14.558	3	1.9758E-06	7162	DP690-2	119.46	100.18			0.79501	0.80177	NaN	1	0	Median	13562000	7042300	6519800	13132	789	12237	25536	61736;61737;61738;61739	61738		4	9606
SNNIINETTTR	0	1	Unmodified	1261.6262	0.62624295	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	8	2.92			1						1	2							12.96	12.96	2	0.0014382	6581	DP690-10	140.17	94.834			NaN	NaN	NaN	0	0	Median	4785100	0	4785100	13133	2215	12238	25537;25538;25539;25540	61740;61741;61742;61743;61744	61741		5	9606
SNNKENITIVDISR	1	1	Unmodified	1601.8373	0.83729835	2081	Q9H061	TMEM126A	Transmembrane protein 126A	yes	yes	0	0	1	16	0																2	14.562	14.562	2;3	1.1393E-05	7968	DP690-16	130.47	82.353			0.8656	0.94354	NaN	1	0	Median	44778000	23693000	21085000	13134	2081	12239	25541;25542	61745;61746;61747	61745		3	9606
SNNSETSSVAQSGSESKVEPK	2	0	Unmodified	2150.9927	0.99274896	808;16	P49792;O14715;Q99666;A6NKT7;Q7Z3J3	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	no	no	0	0	1	9.5	0.5									1	1							10.524	10.524	3	7.7148E-05	3048	DP690-10	110.98	110.98			0.71745	0.89419	6.0534	2	0	Median	63634000	39939000	23695000	13135	808;16	12240	25543;25544	61748;61749;61750;61751;61752	61750		5	9606
SNNVEMDWVLK	1	0	Unmodified	1333.6336	0.63363651	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	13	0													1				18.86	18.86	2	0.00023793	13978	DP690-13	160.75	132.93			0.78014	0.86704	NaN	1	0	Median	213330000	113090000	100250000	13136	639	12241	25545	61753;61754;61755;61756;61757	61756		5	9606
SNNYVQEPECR	0	1	Unmodified	1394.5885	0.58847723	1554	Q7Z6M4	MTERF4	Transcription termination factor 4, mitochondrial;mTERF domain-containing protein 2 processed	yes	yes	0	0	0	14	0														1			11.895	11.895	2	0.00045511	4637	DP690-14	114.97	91.54			0.75136	0.91113	NaN	1	0	Median	27023000	14865000	12158000	13137	1554	12242	25546	61758;61759	61759		2	9606
SNPEDQILYQTER	0	1	Unmodified	1591.7478	0.74781464	1255	Q14165	MLEC	Malectin	yes	yes	0	0	0	15	0															1		16.307	16.307	2	0.007286	10664	DP690-15	106.62	60.854			NaN	NaN	NaN	0	0	Median	10058000	10058000	0	13138	1255	12243	25547	61760;61761	61761		2	9606
SNPGDFTLSVR	0	1	Unmodified	1191.5884	0.58840088	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	4	0				1													16.427	16.427	2	0.00028869	10403	DP690-4	120.31	96.084			0.80184	0.90189	NaN	1	0	Median	30576000	16036000	14540000	13139	1120	12244	25548	61762;61763;61764	61764		3	9606
SNPSAVAGNETPGASTK	1	0	Unmodified	1586.7536	0.7536283	2329	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	0	10	0										1							10.912	10.912	2	5.463E-13	3607	DP690-10	209.11	157.38			0.68399	0.84069	NaN	1	0	Median	38840000	24188000	14652000	13140	2329	12245	25549	61765;61766;61767;61768	61767		4	9606
SNQEQVQPGGPPR	0	1	Unmodified	1392.6746	0.67459012	2054	Q9BYK8	HELZ2	Helicase with zinc finger domain 2	yes	yes	0	0	0	10	0										1							10.541	10.541	2	0.0037274	2991	DP690-10	157.75	109.79			NaN	NaN	NaN	0	0	Median	0	0	0	13141	2054	12246	25550	61769	61769		1	9606
SNQQLENDLNLMDIK	1	0	Oxidation (M)	1789.8516	0.85162779	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	1	0	4.67	3.77		2								1							17.745	17.745	2	1.0348E-11	10986	DP690-2	186.51	137.51			0.54459	0.67216	NaN	1	0	Median	61928000	29060000	32868000	13142	766	12247	25551;25552;25553	61770;61771;61772;61773	61771	1141	4	9606
SNQQLVDIIEK	1	0	Unmodified	1285.6878	0.68778057	948	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	7	0							1										17.157	17.157	2	0.0004876	11050	DP690-7	113.93	113.93			1.2035	1.2973	NaN	1	0	Median	39451000	18673000	20778000	13143	948	12248	25554	61774;61775;61776	61774		3	9606
SNRDELELELAENRK	1	2	Unmodified	1814.9123	0.91225421	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	2	10	0										1							13.775	13.775	3	0.025504	7796	DP690-10	56.746	21.443			1.2762	1.4642	NaN	1	0	Median	98719000	40685000	58033000	13144	1301	12249	25555	61777	61777		1	9606
SNSLIHTECLSQVQR	0	1	Unmodified	1770.8683	0.86828091	196	O43929	ORC4	Origin recognition complex subunit 4	yes	yes	0	0	0	13	0													1				14.098	14.098	3	6.456E-06	7484	DP690-13	138.01	92.187		+	0.80093	0.97524	NaN	1	0	Median	44726000	20800000	23926000	13145	196	12250	25556	61778;61779;61780	61779		3	9606
SNSVEMDWVLK	1	0	Oxidation (M)	1322.6177	0.61765209	901	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	1	0	13	0													1				17.054	17.054	2	0.0090964	11546	DP690-13	87.258	66.286			0.75656	0.86616	NaN	1	0	Median	98855000	51997000	46858000	13146	901	12251	25557	61781;61782	61781	1398	2	9606
SNSVEMDWVLK	1	0	Unmodified	1306.6227	0.62273747	901	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	0	13	0													1				19.014	19.014	2	0.00053652	14113	DP690-13	112.36	83.196			0.86564	1.0008	NaN	1	0	Median	57243000	31691000	25552000	13147	901	12251	25558	61783;61784;61785;61786	61785		4	9606
SNSVGIQDAFNDGSDSTFQK	1	0	Unmodified	2115.9345	0.93450579	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	10	0										2							17.425	17.425	2	2.5287E-22	13009	DP690-10	210.37	139.22			NaN	NaN	NaN	0	0	Median	19876000	19876000	0	13148	103	12252	25559;25560	61787;61788;61789	61787		3	9606
SNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETR	0	2	Unmodified	4243.977	0.97700309	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	11	0											1						21.259	21.259	4	1.5138E-06	18539	DP690-11	65.378	65.378			0.72794	0.89734	NaN	1	0	Median	23922000	12269000	11653000	13149	483	12253	25561	61790;61791;61792;61793;61794;61795;61796	61792		7	9606
SNTLPISLQSIR	0	1	Unmodified	1327.746	0.74596415	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10.5	0.5										1	1						18.222	18.222	2	0.01366	14053	DP690-11	73.841	30.19			0.56498	0.67619	NaN	1	0	Median	116150000	95945000	20204000	13150	732	12254	25562;25563	61797;61798;61799;61800	61799		4	9606
SNVEDSIVR	0	1	Unmodified	1017.5091	0.50908792	1805	Q93034	CUL5	Cullin-5	yes	yes	0	0	0	3	0			1														13.178	13.178	2	0.076375	6231	DP690-3	59.245	23.365			0.77199	0.87275	NaN	1	0	Median	9778800	5060600	4718200	13151	1805	12255	25564	61801	61801		1	9606
SNVIDSMLFVFGYR	0	1	Oxidation (M)	1662.8076	0.80757813	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	1	0	10	0										1							21.537	21.537	2	0.0088064	18897	DP690-10	80.834	61.193			1.417	1.7645	NaN	1	0	Median	21653000	10788000	10865000	13152	2215	12256	25565	61802;61803	61802	2691	2	9606
SNVIDSMLFVFGYR	0	1	Unmodified	1646.8127	0.81266351	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	10	0										3							25.636	25.636	2	5.8009E-05	23782	DP690-10	138.99	103.28			0.73076	0.8925	NaN	1	0	Median	5834600	3612600	2222000	13153	2215	12256	25566;25567;25568	61804;61805;61806;61807;61808	61805		5	9606
SNVSDAVAQSTR	0	1	Unmodified	1233.5949	0.59494282	919	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	7	0							2										12.127	12.127	2	6.7542E-05	4717	DP690-7	126.19	100.26			1.3013	1.4649	NaN	1	0	Median	43698000	13917000	29781000	13154	919	12257	25569;25570	61809;61810;61811;61812;61813	61810		5	9606
SNVSSPATPTASSSSSTTPTR	0	1	Unmodified	2021.9502	0.95015586	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	10.9	0.99									1	1	3	2					11.397	11.397	2	3.2649E-29	4158	DP690-10	241.8	215.82			0.54576	0.68281	NaN	1	0	Median	47069000	34935000	12134000	13155	1167	12258	25571;25572;25573;25574;25575;25576;25577	61814;61815;61816;61817;61818;61819;61820;61821;61822;61823;61824;61825	61814		12	9606
SNVSSPATPTASSSSSTTPTRK	1	1	Unmodified	2150.0451	0.045118877	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	1	10	0										1							10.476	10.476	3	0.00040235	2939	DP690-10	90.765	74.643			0.73022	0.92967	NaN	1	0	Median	65093000	40723000	24370000	13156	1167	12259	25578	61826	61826		1	9606
SNYNFEKPFLWLAR	1	1	Unmodified	1783.9046	0.90459006	991	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	1	7	0							1										20.194	20.194	3	5.2958E-05	14867	DP690-7	121.04	105.2			0.88847	0.93642	NaN	1	0	Median	22517000	11976000	10541000	13157	991	12260	25579	61827;61828;61829	61828		3	9606
SPAAEGLVPCGSLCIAHSR	0	1	Unmodified	1980.951	0.95096468	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	2	0		1															16.041	16.041	3	0.03938	9013	DP690-2	66.779	39.321			NaN	NaN	NaN	0	0	Median	2142000	0	2142000	13158	283	12261	25580	61830	61830		1	9606
SPAGLQVLNDYLADK	1	0	Unmodified	1602.8253	0.82533668	575	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	11	4							1								1		20.545	20.545	2	6.2236E-16	15752	DP690-15	255.24	228.45			0.87215	0.96498	0.93625	2	0	Median	113910000	60027000	53882000	13159	575	12262	25581;25582	61831;61832;61833;61834;61835;61836;61837;61838;61839	61831		9	9606
SPAGPAATPAQAQAASTPR	0	1	Unmodified	1748.8806	0.88056015	1209	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	9	0									2								11.98	11.98	2	0.00033911	4593	DP690-9	128.35	75.103			NaN	NaN	NaN	0	0	Median	766050	766050	0	13160	1209	12263	25583;25584	61840;61841	61840		2	9606
SPAGSQQQFGYSPGQQQTHPQGSPR	0	1	Unmodified	2654.2222	0.22218882	1709	Q8TAP9	MPLKIP	M-phase-specific PLK1-interacting protein	yes	yes	0	0	0	15	0															1		12.312	12.312	3	9.3105E-32	5152	DP690-15	208.08	189.14			0.40316	0.46595	NaN	1	0	Median	12050000	7146900	4902900	13161	1709	12264	25585	61842;61843	61843		2	9606
SPALLLSQLLPYMENR	0	1	Oxidation (M)	1859.9815	0.98151975	1195	Q13268	DHRS2	Dehydrogenase/reductase SDR family member 2, mitochondrial	yes	yes	0	1	0	12.7	4.03							1								1	1	22.317	22.317	2	3.5679E-07	17548	DP690-15	171.26	146.56			0.646	0.75533	14.612	3	0	Median	52862000	30992000	21869000	13162	1195	12265	25586;25587;25588	61844;61845;61846;61847;61848;61849;61850;61851;61852;61853;61854;61855;61856	61847	1847	13	9606
SPALLLSQLLPYMENRR	0	2	Oxidation (M)	2016.0826	0.082630778	1195	Q13268	DHRS2	Dehydrogenase/reductase SDR family member 2, mitochondrial	yes	yes	0	1	1	11	4							1								1		20.316	20.316	3	0.00016363	15528	DP690-15	99.669	80.507			0.7414	0.78216	23.442	2	0	Median	41461000	24155000	17306000	13163	1195	12266	25589;25590	61857;61858;61859;61860;61861	61859	1847	5	9606
SPAPEQFQSR	0	1	Unmodified	1145.5465	0.54653606	2295	Q9P0V3	SH3BP4	SH3 domain-binding protein 4	yes	yes	0	0	0	11	0											1						11.517	11.517	2	0.0029405	4336	DP690-11	96.034	63.141			0.59166	0.70929	NaN	1	0	Median	27838000	16259000	11579000	13164	2295	12267	25591	61862;61863;61864	61862		3	9606
SPAPPLLHVAALGQK	1	0	Unmodified	1497.8667	0.86674799	1641	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	11	0											1						16.182	16.182	3	0.0010865	11153	DP690-11	84.734	84.734			0.65165	0.79037	NaN	1	0	Median	41259000	24936000	16323000	13165	1641	12268	25592	61865;61866;61867	61865		3	9606
SPAQILQWQVLSNTVPAK	1	0	Unmodified	1979.084	0.084010986	35	CON__P02668			yes	yes	0	0	0	4	2.16		1	1				1										20.718	20.718	2	2.2136999999999998E-184	14354	DP690-2	370.66	251.9		+	NaN	NaN	NaN	0	0	Median	113460000	113460000	0	13166	35	12269	25593;25594;25595	61868;61869;61870;61871;61872;61873	61868		6	
SPASCHEHPMADDPSK	1	0	Unmodified	1764.7196	0.71956776	2037	Q9BXB5	OSBPL10	Oxysterol-binding protein-related protein 10	yes	yes	0	0	0	11	0											1						10.244	10.244	4	0.063843	2449	DP690-11	51.073	33.584			NaN	NaN	NaN	0	0	Median	37739000	37739000	0	13167	2037	12270	25596	61874;61875;61876	61875		3	9606
SPASDTYIVFGEAK	1	0	Unmodified	1483.7195	0.71947463	59	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	0	0	14.5	0.5														1	1		17.617	17.617	2	4.6577E-09	12444	DP690-14	199.19	163.64			0.93903	1.1061	2.6175	2	0	Median	192800000	95151000	97652000	13168	59	12271	25597;25598	61877;61878;61879;61880	61878		4	9606
SPDEEDYDYESYEK	1	0	Unmodified	1767.6635	0.66353547	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	9.5	0.5									1	1							15.215	15.215	2	6.6158E-05	8789	DP690-9	124.6	121.28			1.0219	1.2689	21.977	2	0	Median	70013000	38231000	31782000	13169	763	12272	25599;25600	61881;61882;61883	61883		3	9606
SPDEVTLTSIVPTR	0	1	Unmodified	1513.7988	0.79878758	2376	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	13	0													1				18.433	18.433	2	3.9779E-15	13415	DP690-13	236.69	209.36			0.97916	1.1619	NaN	1	0	Median	111830000	56411000	55414000	13170	2376	12273	25601	61884;61885;61886;61887	61886		4	9606
SPDGAHLTWEPPSVTSGK	1	0	Unmodified	1864.8955	0.89554151	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	11	0											1						15.791	15.791	3	1.7472E-10	10546	DP690-11	158.14	103.28			0.58347	0.66904	NaN	1	0	Median	172710000	110200000	62509000	13171	837	12274	25602	61888;61889	61889		2	9606
SPDVGLYGVIPECGETYHSDLAEAK	1	0	Unmodified	2706.2483	0.24831171	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	6	4		1								1							18.394	18.394	3	4.0649E-12	14443	DP690-10	142.54	122.11			1.3626	1.3574	NaN	1	0	Median	63691000	61408000	2282900	13172	766	12275	25603;25604	61890;61891;61892;61893	61890		4	9606
SPEEKQEMLQTEGSQCAK	2	0	Oxidation (M)	2094.9198	0.91978371	2351	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	1	1	13	0													1				10.485	10.485	3	0.0010246	2738	DP690-13	76.761	54.325			0.55336	0.63496	NaN	1	0	Median	12772000	7633100	5138900	13173	2351	12276	25605	61894	61894	2788	1	9606
SPEQQLSATQK	1	0	Unmodified	1215.6095	0.60953025	851	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	0	12	0												1					10.805	10.805	2	0.00010937	3271	DP690-12	166.66	121.32			0.79617	0.94981	NaN	1	0	Median	64830000	34344000	30486000	13174	851	12277	25606	61895;61896;61897	61895		3	9606
SPETGTAGGSSTASYSAGR	0	1	Unmodified	1742.7707	0.77073493	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	9	0									1								11.021	11.021	2	0.063414	3404	DP690-9	84.892	35.391			NaN	NaN	NaN	0	0	Median	0	0	0	13175	1696	12278	25607	61898	61898		1	9606
SPEVLLGSAR	0	1	Unmodified	1027.5662	0.56620887	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	10	4						1								1			14.513	14.513	2	6.0075E-05	8172	DP690-14	168.26	88.807			0.93342	1.0375	12.665	2	0	Median	531520000	292200000	239320000	13176	391	12279	25608;25609	61899;61900;61901;61902	61899		4	9606
SPEYLSLFIDDK	1	0	Unmodified	1425.7028	0.70276193	1229	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	3	0			1														21.074	21.074	2	0.011881	16512	DP690-3	103.34	55.739			NaN	NaN	NaN	0	0	Median	4031500	0	4031500	13177	1229	12280	25610	61903;61904	61903		2	9606
SPFEVNVGMALGDANK	1	0	Oxidation (M)	1663.7876	0.78757097	1270	Q14315	FLNC	Filamin-C	yes	yes	0	1	0	2	0		1															18.423	18.423	2	2.0684E-07	11740	DP690-2	166.6	107.9			NaN	NaN	NaN	0	0	Median	4193800	0	4193800	13178	1270	12281	25611	61905;61906	61906	1949	2	9606
SPFEVQVGPEAGMQK	1	0	Oxidation (M)	1618.7661	0.76610724	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	7.75	3.34		1							1	2							15.817	15.817	2	4.2365E-07	10731	DP690-10	193.22	154.41			0.74341	0.84136	31.28	3	0	Median	263230000	154050000	109180000	13179	250	12282	25612;25613;25614;25615	61907;61908;61909;61910;61911;61912;61913;61914;61915;61916;61917;61918	61909	249	12	9606
SPFEVQVGPEAGMQK	1	0	Unmodified	1602.7712	0.77119262	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							16.794	16.794	2	1.3881E-15	12067	DP690-10	238.92	192.51			0.61103	0.74399	NaN	1	0	Median	180630000	113120000	67510000	13180	250	12282	25616	61919;61920;61921;61922;61923;61924;61925	61920		7	9606
SPFEVQVSPEAGVQK	1	0	Unmodified	1600.8097	0.80968662	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7.2	3.97		1	1						1	1		1					16.297	16.297	2	1.1113999999999999E-39	11356	DP690-10	340.88	258.93			0.85972	0.9156	14.743	4	0	Median	613160000	338520000	274640000	13181	1270	12283	25617;25618;25619;25620;25621	61926;61927;61928;61929;61930;61931;61932;61933;61934;61935;61936;61937;61938;61939;61940;61941;61942;61943;61944;61945;61946;61947	61928		22	9606
SPFEVSVDK	1	0	Unmodified	1006.4971	0.49712625	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	6	4		1								1							14.797	14.797	2	0.00067873	9176	DP690-10	141.52	36.385			0.79674	0.86102	6.964	2	0	Median	340490000	181020000	159470000	13182	250	12284	25622;25623	61948;61949;61950;61951;61952;61953;61954;61955;61956;61957	61949		10	9606
SPFEVSVDKAQGDASK	2	0	Unmodified	1663.8053	0.80532952	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										2							13.662	13.662	3	0.0028553	7552	DP690-10	120.54	79.062			NaN	NaN	NaN	0	0	Median	89469000	89469000	0	13183	250	12285	25624;25625	61958;61959;61960	61960		3	9606
SPFEVYVDK	1	0	Unmodified	1082.5284	0.52842638	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9	3.27		1							1	2	1	1					16.417	16.417	2	0.0001083	11456	DP690-10	172.25	122.53			0.78372	0.79084	6.5547	4	0	Linear	2729300000	1501499999.9999998	1227700000	13184	549	12286	25626;25627;25628;25629;25630;25631	61961;61962;61963;61964;61965;61966;61967;61968;61969;61970;61971;61972;61973;61974;61975;61976;61977;61978;61979	61962		19	9606
SPFEVYVDKSQGDASK	2	0	Unmodified	1755.8315	0.83154427	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10	0.707									1	2	1						14.819	14.819	2;3	9.804600000000001E-33	9333	DP690-10	347.51	289.63			0.73887	0.83856	9.9916	3	0	Median	1249100000	810370000	438710000	13185	549	12287	25632;25633;25634;25635	61980;61981;61982;61983;61984;61985;61986;61987;61988;61989;61990;61991;61992;61993	61989		13	9606
SPFLQVFNNSPDESSYYR	0	1	Unmodified	2148.9752	0.9752484	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	7	4			1								1						20.047	20.047	2	3.5843000000000005E-33	16681	DP690-11	273.07	220.49			0.68845	0.82093	NaN	1	0	Median	40402000	24589000	15813000	13186	1333	12288	25636;25637	61994;61995;61996;61997;61998	61996		5	9606
SPFPVHVSEACNPNACR	0	1	Unmodified	1940.8621	0.86214967	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	9	3.27		1							1	2	1	1					13.91	13.91	2;3	4.6176E-18	7861	DP690-10	214.65	192.5			0.72125	0.8442	15.691	6	0	Median	818210000	469930000	348280000	13187	1270	12289	25638;25639;25640;25641;25642;25643	61999;62000;62001;62002;62003;62004;62005;62006;62007;62008;62009;62010;62011;62012;62013;62014;62015;62016;62017;62018	62002		20	9606
SPFRVGVTEGCDPTR	0	2	Unmodified	1676.7941	0.79405333	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	10	0										2							13.836	13.836	3	0.0032087	7794	DP690-10	97.214	72.25			NaN	NaN	NaN	0	0	Median	0	0	0	13188	1270	12290	25644;25645	62019;62020	62019		2	9606
SPFSVAVSPSLDLSK	1	0	Unmodified	1532.8086	0.80862399	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.67	2.94		1							1	4	1	1	1				20.043	20.043	2	7.0608E-42	15643	DP690-10	340.93	222.59			0.75594	0.87527	15.67	6	0	Median	400260000	234310000	165960000	13189	549	12291	25646;25647;25648;25649;25650;25651;25652;25653;25654	62021;62022;62023;62024;62025;62026;62027;62028;62029;62030;62031;62032;62033;62034	62023		13	9606
SPFTVGVAAPLDLSK	1	0	Unmodified	1500.8188	0.81879474	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	7	3.56		1							1	1							19.72	19.72	2	2.8834E-14	16279	DP690-10	213.63	183.61			0.67295	0.76601	2.4067	3	0	Plateau	465140000	278060000	187080000	13190	250	12292	25655;25656;25657	62035;62036;62037;62038;62039;62040;62041;62042;62043;62044;62045	62036		11	9606
SPFVVNVAPPLDLSK	1	0	Unmodified	1581.8766	0.87664397	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7.83	3.89		1	1						1	1	1	1					20.355	20.355	2	1.1967E-06	17210	DP690-10	182.25	154.38			0.67164	0.8254	6.9597	6	0	Median	537400000	307320000	230080000	13191	1270	12293	25658;25659;25660;25661;25662;25663	62046;62047;62048;62049;62050;62051;62052;62053;62054;62055;62056;62057;62058;62059;62060;62061;62062;62063;62064;62065;62066;62067;62068	62048		23	9606
SPFVVQVGEACNPNACR	0	1	Unmodified	1903.8669	0.8669007	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	7.17	3.72		2							2	1	1						16.426	16.426	2	1.2484E-33	11531	DP690-10	314.35	270.17			0.59632	0.70719	17.899	2	0	Median	313250000	190280000	122970000	13192	250	12294	25664;25665;25666;25667;25668;25669	62069;62070;62071;62072;62073;62074;62075;62076;62077;62078;62079;62080;62081;62082;62083	62071		15	9606
SPGALETPSAAGSQGNTASQGK	1	0	Unmodified	2014.9556	0.95557559	2438	Q9Y2D5	AKAP2	A-kinase anchor protein 2	yes	yes	0	0	0	11.1	1.05									1	1	2	4					12.321	12.321	2	4.9297E-129	5512	DP690-11	418.24	418.24			0.83527	0.97073	8.8843	3	0	Plateau	186940000	98095000	88844000	13193	2438	12295	25670;25671;25672;25673;25674;25675;25676;25677	62084;62085;62086;62087;62088;62089;62090;62091;62092;62093;62094;62095;62096;62097;62098;62099;62100;62101	62096		18	9606
SPGLSPSSPSPEFLGLR	0	1	Unmodified	1726.889	0.88899957	1584	Q86X51	CXorf67	Uncharacterized protein CXorf67	yes	yes	0	0	0	12	0												1					19.062	19.062	2	0.021537	14605	DP690-12	104.94	66.154			NaN	NaN	NaN	0	0	Median	0	0	0	13194	1584	12296	25678	62102	62102		1	9606
SPGSPVGEGTGSPPK	1	0	Unmodified	1352.6572	0.65720872	671	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	11	0											1						10.869	10.869	2	6.7999E-07	3385	DP690-11	188.27	188.27			0.75053	0.92806	NaN	1	0	Median	15582000	10371000	5210700	13195	671	12297	25679	62103;62104	62103		2	9606
SPGVVISDDEPGYDLDLFCIPNHYAEDLER	0	1	Unmodified	3434.5613	0.56126601	356	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	7	0							1										22.34	22.34	3	5.1429E-11	17330	DP690-7	134	112.16			NaN	NaN	NaN	0	0	Median	1436300	1436300	0	13196	356	12298	25680	62105	62105		1	9606
SPHEVFGCVVPEGGSQAAVGPQK	1	0	Unmodified	2336.1219	0.12192941	1584	Q86X51	CXorf67	Uncharacterized protein CXorf67	yes	yes	0	0	0	12	0												5					15.235	15.235	3	0.00026853	9275	DP690-12	84.371	54.735			1.4552	1.7333	NaN	1	0	Median	72850000	22908000	49942000	13197	1584	12299	25681;25682;25683;25684;25685	62106;62107;62108;62109;62110;62111;62112	62110		7	9606
SPIAEAVFR	0	1	Unmodified	988.53418	0.53418046	577	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	yes	yes	0	0	0	8	0								1									16.231	16.231	2	0.001201	9524	DP690-8	123.72	57.647			0.92048	1.0276	NaN	1	0	Median	18197000	10091000	8106300	13198	577	12300	25686	62113;62114;62115;62116	62116		4	9606
SPILVATAVAAR	0	1	Unmodified	1167.6976	0.69755739	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	9	3.56				1							1	1					16.328	16.328	2	0.00022698	11273	DP690-11	142.36	84.131			0.88622	0.96617	6.7047	3	0	Median	754300000	392860000	361440000	13199	96	12301	25687;25688;25689	62117;62118;62119;62120;62121;62122;62123;62124;62125;62126;62127	62117		11	9606
SPISVPGGSALISNLGK	1	0	Unmodified	1595.8883	0.88827129	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	11	0											1						19.29	19.29	2	3.1274E-07	15616	DP690-11	144.47	101.16			0.60504	0.72742	NaN	1	0	Median	93433000	53533000	39900000	13200	837	12302	25690	62128;62129;62130;62131	62130		4	9606
SPITGNDLSPPVSFNLMFK	1	0	Oxidation (M)	2079.0347	0.034677532	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	1	0	3	0			1														21.044	21.044	2	1.7334E-29	16318	DP690-3	233.52	188.41			0.70382	0.74747	NaN	1	0	Median	30707000	18353000	12354000	13201	720	12303	25691	62132;62133;62134;62135;62136;62137	62133	1054	6	9606
SPLAQMEEERR	0	2	Unmodified	1344.6456	0.64559818	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	1	13	0													1				12.743	12.743	3	0.022476	5733	DP690-13	56.404	26.861			0.67405	0.77395	NaN	1	0	Median	161020000	98282000	62738000	13202	1351	12304	25692	62138	62138		1	9606
SPLLAGGSPPQPVVPAHKDK	2	0	Unmodified	1994.0949	0.094910023	1700	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	0	0	1	14	0														2			13.199	13.199	3;4	0.00095617	6434	DP690-14	68.411	68.411			0.60373	0.67631	4.669	2	0	Median	116640000	63970000	52673000	13203	1700	12305	25693;25694	62139;62140	62139		2	9606
SPLSSPQQTQLLGELEKDPK	2	0	Unmodified	2194.1481	0.14812739	2381	Q9UKZ1	CNOT11	CCR4-NOT transcription complex subunit 11	yes	yes	0	0	1	13	0													1				17.523	17.523	3	0.0095063	12288	DP690-13	56.799	45.153			0.71664	0.8115	NaN	1	0	Median	32525000	18617000	13908000	13204	2381	12306	25695	62141;62142	62142		2	9606
SPLVAAMQHFLPVLK	1	0	Unmodified	1649.9327	0.93271906	320	O95373	IPO7	Importin-7	yes	yes	0	0	0	7	4			1								1						21.92	21.92	3	0.0016041	17439	DP690-3	78.287	60.543			1.131	1.1815	NaN	1	0	Median	7463100	5763400	1699700	13205	320	12307	25696;25697	62143;62144;62145;62146	62145		4	9606
SPLVAAMQHFLPVLK	1	0	Oxidation (M)	1665.9276	0.92763369	320	O95373	IPO7	Importin-7	yes	yes	0	1	0	3	0			1														18.176	18.176	3	0.011106	12873	DP690-3	63.292	63.292			1.4454	1.542	NaN	1	0	Median	13188000	5044200	8143600	13206	320	12307	25698	62147	62147	336	1	9606
SPLVMDVLNIQGVQR	0	1	Oxidation (M)	1683.8978	0.89779012	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	7.25	3.03		1							3								19.257	19.257	2	8.4445E-10	13961	DP690-9	208.17	176.99			0.88762	1.0021	31.755	2	0	Median	17331000	10633000	6697900	13207	1264	12308	25699;25700;25701;25702	62148;62149;62150;62151;62152;62153;62154;62155	62152	1927	8	9606
SPMVEQAVQTGSADNLNAK	1	0	Oxidation (M)	1974.9317	0.93166902	2034	Q9BX40	LSM14B	Protein LSM14 homolog B	yes	yes	0	1	0	13	0													1				13.961	13.961	2	1.2477E-79	7344	DP690-13	288.77	217.22			NaN	NaN	NaN	0	0	Median	7624400	7624400	0	13208	2034	12309	25703	62156;62157	62157	2565	2	9606
SPNDFALWK	1	0	Unmodified	1076.5291	0.52909508	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														18.203	18.203	2	0.002596	12864	DP690-3	109.48	75.306			0.77876	0.83469	NaN	1	0	Median	15376000	6273900	9101700	13209	797	12310	25704	62158;62159	62159		2	9606
SPNEEYTWEEDPLAGIIPR	0	1	Unmodified	2215.0433	0.043327963	859	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	11	0											1						22.66	22.66	2	1.9123E-13	20108	DP690-11	189.09	163.77			0.66924	0.82476	NaN	1	0	Median	12088000	6024100	6064100	13210	859	12311	25705	62160;62161	62160		2	9606
SPNLWLK	1	0	Unmodified	856.48069	0.48068833	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								16.047	16.047	1	0.008524	9991	DP690-9	120.62	24.828			NaN	NaN	NaN	0	0	Median	3023200	3023200	0	13211	1046	12312	25706	62162	62162		1	9606
SPPCEDFSVTGESEK	1	0	Unmodified	1667.6985	0.69848119	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								14.574	14.574	2	0.0062134	8080	DP690-9	109.24	58.445			NaN	NaN	NaN	0	0	Median	3451800	3451800	0	13212	1048	12313	25707	62163;62164	62164		2	9606
SPPESENKEQLEAR	1	1	Unmodified	1612.7693	0.76927837	1279	Q14534	SQLE	Squalene monooxygenase	yes	yes	0	0	1	4	0				1													10.332	10.332	3	0.0027692	2695	DP690-4	65.038	31.197			0.97823	1.1157	NaN	1	0	Median	6484400	3039500	3444800	13213	1279	12314	25708	62165;62166	62165		2	9606
SPPILPTLDSLK	1	0	Unmodified	1279.7388	0.73875351	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	12	0												1					19.443	19.443	2	0.00022121	15123	DP690-12	158.47	158.47			0.64246	0.70522	NaN	1	0	Median	256880000	152900000	103970000	13214	2240	12315	25709	62167;62168;62169;62170	62170		4	9606
SPPLIGSESAYESFLSADDK	1	0	Unmodified	2111.9899	0.98989541	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	10	0										1							20.499	20.499	2	0.050982	17402	DP690-10	86.214	37.701			NaN	NaN	NaN	0	0	Median	0	0	0	13215	763	12316	25710	62171	62171		1	9606
SPPPGMGLNQNR	0	1	Oxidation (M)	1282.6088	0.60881874	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	0	11	0											1						10.396	10.396	2	0.0066595	2688	DP690-11	88.177	52.999			0.64735	0.78127	NaN	1	0	Median	91770000	52248000	39521000	13216	566	12317	25711	62172	62172	750	1	9606
SPPPGMGLNQNR	0	1	Unmodified	1266.6139	0.61390412	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	11	0											1						12.45	12.45	2	0.00047262	5769	DP690-11	112.84	70.506			0.58635	0.70541	NaN	1	0	Median	73940000	47049000	26891000	13217	566	12317	25712	62173;62174;62175	62175		3	9606
SPPSSSEIFTPAHEENVR	0	1	Unmodified	1982.9334	0.93338358	21	C9JLW8	FAM195B	Protein FAM195B	yes	yes	0	0	0	16	0																1	14.112	14.112	3	0.00032362	7394	DP690-16	91.475	73.319			0.60358	0.70198	NaN	1	0	Median	17010000	10202000	6808400	13218	21	12318	25713	62176;62177	62176		2	9606
SPPSVTLFPPSTEELNGNK	1	0	Unmodified	2013.0055	0.0054858935	47	CON__Q1RMN8			yes	yes	0	0	0	2	0		1															18.362	18.362	2	0.00061521	11745	DP690-2	122.46	86.814		+	NaN	NaN	NaN	0	0	Median	1524600	1524600	0	13219	47	12319	25714	62178;62179	62178		2	
SPPSYSVLYPSSDPK	1	0	Unmodified	1622.7828	0.78280317	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	11	0											2						16.233	16.233	2	1.222E-74	11244	DP690-11	293.71	213.49			NaN	NaN	NaN	0	0	Median	164010000	164010000	0	13220	1653	12320	25715;25716	62180;62181;62182;62183	62182		4	9606
SPPTQVAISSDSAR	0	1	Unmodified	1414.7052	0.70522155	1515	Q6ZUT6	C15orf52	Uncharacterized protein C15orf52	yes	yes	0	0	0	13	0													1				12.652	12.652	2	0.00020148	5514	DP690-13	117.27	77.722			0.73775	0.90888	NaN	1	0	Median	18240000	11442000	6798100	13221	1515	12321	25717	62184;62185;62186;62187	62187		4	9606
SPPYTAFLGNLPYDVTEESIKEFFR	1	1	Unmodified	2919.4331	0.43307602	573	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	1	11	0											1						25.38	25.38	3	8.3905E-05	23375	DP690-11	114.39	86.311			0.52809	0.57445	NaN	1	0	Median	2716400	1624000	1092300	13222	573	12322	25718	62188;62189	62189		2	9606
SPQEEALQR	0	1	Unmodified	1056.52	0.51998696	1800	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	3	0			1														10.803	10.803	2	0.026335	3176	DP690-3	118.74	53.497			NaN	NaN	NaN	0	0	Median	0	0	0	13223	1800	12323	25719	62190	62190		1	9606
SPQILVPTLFNLLSR	0	1	Unmodified	1696.9876	0.98759141	2122	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	9.5	0.5									1	1							24.761	24.761	2	5.559E-07	22763	DP690-10	162.49	92.088			NaN	NaN	NaN	0	0	Median	4711200	4711200	0	13224	2122	12324	25720;25721	62191;62192;62193;62194;62195	62193		5	9606
SPQNQYPAELMR	0	1	Oxidation (M)	1448.6718	0.67181293	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	1	0	3	0			1														13.423	13.423	2	0.0025766	6546	DP690-3	99.568	79.281			0.8855	1.0162	NaN	1	0	Median	15950000	9262000	6687900	13225	653	12325	25722	62196;62197;62198;62199	62197	920	4	9606
SPQPVCSPAGSEGTPK	1	0	Unmodified	1597.7406	0.74062078	1476	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	10	0										2							11.302	11.302	2	0.00056464	4133	DP690-10	153	98.741			NaN	NaN	NaN	0	0	Median	0	0	0	13226	1476	12326	25723;25724	62200;62201	62201		2	9606
SPQQVMGSLVK	1	0	Oxidation (M)	1188.6173	0.61725816	2126	Q9H6Q4;Q9UHQ1	NARFL;NARF	Cytosolic Fe-S cluster assembly factor NARFL;Nuclear prelamin A recognition factor	yes	no	0	1	0	4	0				1													11.881	11.881	2	0.0021967	4588	DP690-4	103.88	62.43			0.7798	0.84629	NaN	1	0	Median	9279700	4851700	4428000	13227	2126	12327	25725	62202;62203;62204	62204	2623	3	9606
SPQSDPADTPTNTK	1	0	Unmodified	1457.6634	0.66341631	749	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	10	0										1							10.44	10.44	2	0.0063156	2834	DP690-10	120.6	73.416			NaN	NaN	NaN	0	0	Median	0	0	0	13228	749	12328	25726	62205	62205		1	9606
SPQTPELVEALAFR	0	1	Unmodified	1556.8199	0.81985738	2271	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	11	0											1						20.673	20.673	2	0.005494	17562	DP690-11	80.245	55.407			1.939	2.313	NaN	1	0	Median	37935000	22586000	15349000	13229	2271	12329	25727	62206	62206		1	9606
SPRPQDLIR	0	2	Unmodified	1080.604	0.60399136	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	1	12	0												3					12.803	12.803	3	0.0046605	5886	DP690-12	125.16	77.455			NaN	NaN	NaN	0	0	Median	0	0	0	13230	2342	12330	25728;25729;25730	62207;62208;62209	62207		3	9606
SPSDEYKDNLHQVSK	2	0	Unmodified	1745.822	0.82204222	2369	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	1	15	0															1		10.957	10.957	4	0.00063893	3461	DP690-15	78.508	66.303			0.99842	1.1429	NaN	1	0	Median	25096000	12918000	12178000	13231	2369	12331	25731	62210;62211	62210		2	9606
SPSDSGYSYETIGK	1	0	Unmodified	1489.6573	0.6572683	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	7	3.56		1							1	1							14.471	14.471	2	2.7126E-06	8771	DP690-10	186.74	166.71			0.9207	0.93048	17.824	3	0	Median	124930000	66514000	58414000	13232	763	12332	25732;25733;25734	62212;62213;62214;62215;62216;62217;62218;62219	62213		8	9606
SPSDSSTASTPVAEQIER	0	1	Unmodified	1860.8701	0.87011462	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	0	10.2	2.71			1						1	3	2	1	2				14.116	14.116	2	7.4115E-43	7899	DP690-11	311.54	276.46			0.55456	0.62643	34.206	5	0	Median	929860000	525940000	403910000	13233	1365	12333	25735;25736;25737;25738;25739;25740;25741;25742;25743;25744	62220;62221;62222;62223;62224;62225;62226;62227;62228;62229;62230;62231;62232;62233;62234;62235;62236;62237;62238;62239;62240;62241;62242	62225		23	9606
SPSGSAFGSQENLR	0	1	Unmodified	1435.6692	0.66917039	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	7.5	3.2		1							2	1							13.378	13.378	2	4.0307E-14	7132	DP690-10	223.77	197.26			1.0051	1.1363	16.142	2	0	Median	125000000	68522000	56478000	13234	1901	12334	25745;25746;25747;25748	62243;62244;62245;62246;62247;62248;62249;62250	62243		8	9606
SPSLDVTVPEAELNLETPEISVGGK	1	0	Unmodified	2580.317	0.31704321	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								21.246	21.246	2	5.1581E-05	16339	DP690-9	135.23	104.67			NaN	NaN	NaN	0	0	Median	2148500	2148500	0	13235	1145	12335	25749	62251	62251		1	9606
SPSLGSDLTFATR	0	1	Unmodified	1350.6779	0.67794416	1208	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	12	0												1					17.653	17.653	2	2.6989E-05	12692	DP690-12	178.46	136.27			0.72947	0.86766	NaN	1	0	Median	69076000	41970000	27107000	13236	1208	12336	25750	62252;62253;62254;62255	62254		4	9606
SPSPFHAVAECR	0	1	Unmodified	1356.6245	0.62446881	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	4	0				1													12.525	12.525	3	0.016705	5240	DP690-4	99.539	59.958			NaN	NaN	NaN	0	0	Median	7354400	7354400	0	13237	2385	12337	25751	62256;62257	62257		2	9606
SPSPSSPAAVNHHSSSDISPVSNESTSSSPGK	1	0	Unmodified	3120.4232	0.42319263	251	O75381	PEX14	Peroxisomal membrane protein PEX14	yes	yes	0	0	0	13.5	0.5													1	1			11.656	11.656	4	1.0304E-08	4221	DP690-13	110.9	110.9			0.46503	0.53756	NaN	1	0	Median	64428000	42565000	21863000	13238	251	12338	25752;25753	62258;62259;62260;62261	62258		4	9606
SPSSLLIANLHLQ	0	0	Unmodified	1391.7773	0.77726428	1456	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	3	0			1														20.572	20.572	2	0.0040116	15935	DP690-3	123.51	68.729			NaN	NaN	NaN	0	0	Median	0	0	0	13239	1456	12339	25754	62262;62263	62263		2	9606
SPSWQRPNQGVPSTGR	0	2	Unmodified	1752.8656	0.86557879	1869	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	1	12	0												1					12.378	12.378	3	0.0011125	5313	DP690-12	83.54	64.708			0.792	0.898	NaN	1	0	Median	53996000	30779000	23217000	13240	1869	12340	25755	62264;62265	62264		2	9606
SPTAALNESLVECPK	1	0	Unmodified	1614.7923	0.792322	1400	Q53EZ4	CEP55	Centrosomal protein of 55 kDa	yes	yes	0	0	0	12	0												1					15.935	15.935	2	1.3872E-05	10400	DP690-12	131.17	112.9			0.83817	1.0044	NaN	1	0	Median	30745000	15273000	15472000	13241	1400	12341	25756	62266;62267;62268	62267		3	9606
SPTDWALFTYEGNSNDIR	0	1	Unmodified	2084.9439	0.94394827	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	12	0												1					20.72	20.72	2	5.5341E-13	16798	DP690-12	184.34	163.04			0.75621	0.92258	NaN	1	0	Median	7173700	3813500	3360300	13242	2361	12342	25757	62269;62270;62271;62272	62272		4	9606
SPTLYGISHDDLKGDPLLDQR	1	1	Unmodified	2339.1757	0.17573912	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	10	0										1							17.359	17.359	4	0.00047493	13026	DP690-10	82.8	67.216			0.73671	0.85301	NaN	1	0	Median	265390000	146330000	119070000	13243	269	12343	25758	62273	62273		1	9606
SPTTTASVSATAAPR	0	1	Unmodified	1416.7209	0.72087161	1347	Q15723	ELF2	ETS-related transcription factor Elf-2	yes	yes	0	0	0	12	0												1					11.714	11.714	2	0.015914	4454	DP690-12	121.68	63.895			NaN	NaN	NaN	0	0	Median	0	0	0	13244	1347	12344	25759	62274	62274		1	9606
SPVDVLQIFR	0	1	Unmodified	1172.6554	0.65535823	2371	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	yes	yes	0	0	0	2	0		1															21.732	21.732	2	0.00067247	15421	DP690-2	113.71	41.381			0.91275	0.93367	NaN	1	0	Median	2183000	1073100	1109900	13245	2371	12345	25760	62275;62276;62277	62275		3	9606
SPVDYGTSAGVWSQDK	1	0	Unmodified	1695.774	0.77402939	2053	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	0	0	12	0												1					16.251	16.251	2	1.2597E-39	10785	DP690-12	322.23	277.1			0.77518	0.92505	NaN	1	0	Median	70092000	36786000	33305000	13246	2053	12346	25761	62278;62279;62280;62281;62282	62282		5	9606
SPVDYGTSAGVWSQDKWK	2	0	Unmodified	2009.9483	0.94830537	2053	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	0	1	12	0												1					16.696	16.696	3	6.6771E-05	11395	DP690-12	116.04	91.256			0.8202	0.92063	NaN	1	0	Median	150850000	85061000	65784000	13247	2053	12347	25762	62283;62284;62285	62284		3	9606
SPVESTTEPPAVR	0	1	Unmodified	1368.6885	0.68850885	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	7.67	3.4			1						1		1						12.461	12.461	2	1.0051E-10	5645	DP690-11	224.75	176.79			0.6424	0.73636	4.1882	3	0	Plateau	266760000	157720000	109040000	13248	883	12348	25763;25764;25765	62286;62287;62288;62289;62290;62291;62292;62293;62294;62295;62296;62297;62298	62289		13	9606
SPVPLTPPGCVALDTR	0	1	Unmodified	1678.8712	0.87124102	1409	Q567V2	MPV17L2	Mpv17-like protein 2	yes	yes	0	0	0	16	0																1	17.563	17.563	2	0.0066542	11765	DP690-16	106.26	48.473			NaN	NaN	NaN	0	0	Median	1850700	1850700	0	13249	1409	12349	25766	62299;62300	62300		2	9606
SPVPSAFSDQSR	0	1	Unmodified	1276.6048	0.60477922	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	9	0									1								13.996	13.996	2	0.022803	7146	DP690-9	96.015	49.021			NaN	NaN	NaN	0	0	Median	5982900	0	5982900	13250	2422	12350	25767	62301;62302	62301		2	9606
SPVPSLRPSSTGPSPSGGLSEEPAAK	1	1	Unmodified	2491.2554	0.255446	2046	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	1	10	0										1							14.453	14.453	3	1.9561E-05	8665	DP690-10	92.716	52.619			NaN	NaN	NaN	0	0	Median	40575000	40575000	0	13251	2046	12351	25768	62303;62304	62303		2	9606
SPVSPLAAQGIPLPAQLTK	1	0	Unmodified	1887.0829	0.082948354	1925	Q96SI1	KCTD15	BTB/POZ domain-containing protein KCTD15	yes	yes	0	0	0	15	0															1		20.009	20.009	2	9.7809E-05	15167	DP690-15	119.32	119.32			0.56576	0.64497	NaN	1	0	Median	2258200	1320500	937620	13252	1925	12352	25769	62305;62306;62307	62306		3	9606
SPVTFLSDLR	0	1	Unmodified	1133.6081	0.60807369	10	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	7	3.56		1							1	1							20.895	20.895	2	0.0010291	16128	DP690-10	108.57	16.716			0.87461	1.0913	6.9055	2	0	Median	72839000	37242000	35597000	13253	10	12353	25770;25771;25772	62308;62309;62310;62311	62308		4	9606
SPVTTLLECMHK	1	0	Oxidation (M)	1430.6898	0.68977118	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	11	0											1						14.979	14.979	3	0.020522	9361	DP690-11	60.301	24.564			0.91979	1.1129	NaN	1	0	Median	62063000	35606000	26457000	13254	897	12354	25773	62312;62313;62314	62314	1394	3	9606
SPVTTLLECMHK	1	0	Unmodified	1414.6949	0.69485656	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						17.933	17.933	3	0.0077671	13621	DP690-11	73.881	38.804			NaN	NaN	NaN	0	0	Median	61465000	61465000	0	13255	897	12354	25774	62315;62316	62315		2	9606
SPVYLDLAYLPSGSSAHLVDEEFFQR	0	1	Unmodified	2939.4341	0.43413865	1457	Q66K74	MAP1S	Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain	yes	yes	0	0	0	11	0											1						22.308	22.308	3	0.00044908	19690	DP690-11	70.316	54.428			0.86348	1.0461	NaN	1	0	Median	20931000	13064000	7867300	13256	1457	12355	25775	62317	62317		1	9606
SPVYLTVLK	1	0	Unmodified	1018.6063	0.60628277	900	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	3	0			1														17.461	17.461	2	0.021124	11949	DP690-3	78.334	35.088			1.7696	1.8588	NaN	1	0	Median	6480000	1860200	4619800	13257	900	12356	25776	62318;62319	62318		2	9606
SPWSNKYDPPLEDGAMPSAR	1	1	Oxidation (M)	2233.011	0.010981977	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	1	1	12.5	3.2							1							2	1		15.3	15.3	2;3	0.0016261	9229	DP690-14	153	121.34			0.58078	0.68152	26.429	3	0	Median	211870000	139470000	72394000	13258	769	12357	25777;25778;25779;25780	62320;62321;62322;62323;62324;62325;62326;62327;62328;62329;62330	62323	1149	11	9606
SPWSNKYDPPLEDGAMPSAR	1	1	Unmodified	2217.0161	0.016067355	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	1	11.7	3.3							1							2			16.418	16.418	2;3	3.0361E-28	10860	DP690-14	220.52	155.23			0.60467	0.6685	NaN	1	0	Median	283710000	167720000	115990000	13259	769	12357	25781;25782;25783	62331;62332;62333;62334;62335;62336;62337;62338;62339	62337		9	9606
SPWVCLTCSSVHCGR	0	1	Unmodified	1804.7807	0.78072823	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	0	12	0												1					15.457	15.457	2	0.018434	9672	DP690-12	96.067	28.071			NaN	NaN	NaN	0	0	Median	5016800	5016800	0	13260	2521	12358	25784	62340	62340		1	9606
SPYLYPLYGLGELPQGFAR	0	1	Unmodified	2140.0993	0.099326699	816	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	yes	no	0	0	0	5	0					1												22.922	22.922	2	0.0073736	17946	DP690-5	112.84	69.435			NaN	NaN	NaN	0	0	Median	0	0	0	13261	816	12359	25785	62341	62341		1	9606
SPYQEFTDHLVK	1	0	Unmodified	1462.7092	0.70924429	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	13	3.03							1							2	2		16.601	16.601	2;3	9.5881E-08	11059	DP690-14	202.65	136.08			0.85501	0.96488	6.3757	5	0	Median	1513299999.9999998	825520000	687820000	13262	502	12360	25786;25787;25788;25789;25790	62342;62343;62344;62345;62346;62347;62348;62349;62350;62351;62352;62353;62354;62355;62356;62357	62348		16	9606
SPYTVTVGQACNPSACR	0	1	Unmodified	1866.8353	0.83526622	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.9	4.39		1	1						1	2	1	1	1	1	1	2	14.42	14.42	2	1.4169E-59	8065	DP690-12	357.54	323.78			0.75089	0.86077	12.602	8	0	Median	2732200000	1544799999.9999998	1187400000	13263	549	12361	25791;25792;25793;25794;25795;25796;25797;25798;25799;25800;25801;25802	62358;62359;62360;62361;62362;62363;62364;62365;62366;62367;62368;62369;62370;62371;62372;62373;62374;62375;62376;62377;62378;62379;62380;62381;62382;62383;62384;62385;62386	62366		29	9606
SQACEPSEPEIEIK	1	0	Unmodified	1615.74	0.73995207	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							14.944	14.944	2	0.001046	9408	DP690-10	115.92	96.963			0.57471	0.70932	NaN	1	0	Median	85540000	57195000	28345000	13264	591	12362	25803	62387;62388	62388		2	9606
SQAEPLSGNKEPLADTSSNQQK	2	0	Unmodified	2328.1193	0.11934645	801	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	1	10	0										1							12.135	12.135	3	3.0279E-15	5357	DP690-10	167.89	167.89			0.55306	0.66779	NaN	1	0	Median	123850000	73675000	50179000	13265	801	12363	25804	62389;62390;62391;62392;62393;62394	62393		6	9606
SQAFIEMETR	0	1	Oxidation (M)	1226.5601	0.56013721	735	P43243	MATR3	Matrin-3	yes	yes	0	1	0	11	0											1						13.306	13.306	2	0.077813	6930	DP690-11	65.278	27.581			0.78864	0.93288	NaN	1	0	Median	133650000	80012000	53643000	13266	735	12364	25805	62395	62395		1	9606
SQAFIEMETR	0	1	Unmodified	1210.5652	0.56522259	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											1						15.549	15.549	2	0.0018308	10262	DP690-11	103.31	65.584			0.95308	1.1368	NaN	1	0	Median	120030000	62608000	57418000	13267	735	12364	25806	62396;62397;62398	62397		3	9606
SQAPCANKDEADLSSK	2	0	Unmodified	1719.7734	0.77337747	1926	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	0	1	12	0												1					10.494	10.494	3	3.5853E-05	2821	DP690-12	122.96	105.33			0.68018	0.75605	NaN	1	0	Median	230360000	128840000	101520000	13268	1926	12365	25807	62399;62400	62399		2	9606
SQAPGQPGASQWGSR	0	1	Unmodified	1512.707	0.70695288	1845	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	0	0	13.5	0.5													1	1			12.405	12.405	2	2.4988E-05	5126	DP690-13	156	136.9			0.79852	0.96269	NaN	1	0	Median	87597000	50282000	37315000	13269	1845	12366	25808;25809	62401;62402;62403;62404;62405	62402		5	9606
SQAPLESSLDSLGDVFLDSGR	0	1	Unmodified	2192.0597	0.059706308	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							23.614	23.614	2	1.4804E-19	21503	DP690-10	193.31	166.68			0.98449	1.2356	NaN	1	0	Median	12172000	7127800	5044100	13270	1301	12367	25810	62406;62407;62408;62409;62410	62407		5	9606
SQATSPGQTNGDSSLEVLATR	0	1	Unmodified	2118.0189	0.018904126	1885	Q96JY6	PDLIM2	PDZ and LIM domain protein 2	yes	yes	0	0	0	14	0														1			16.251	16.251	2	2.2774E-15	10690	DP690-14	176.42	136.05			0.81282	0.98486	NaN	1	0	Median	39000000	13465000	25535000	13271	1885	12368	25811	62411;62412	62412		2	9606
SQDAEVGDGTTSVTLLAAEFLK	1	0	Unmodified	2251.122	0.12197221	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	8	4				1								1					23.966	23.966	2	0.00014366	18778	DP690-4	137.19	137.19			1.3871	1.555	30.843	2	0	Median	2274400	930850	1343500	13272	1959	12369	25812;25813	62413;62414;62415;62416;62417;62418;62419	62415		7	9606
SQDATFSPGSEQAEK	1	0	Unmodified	1580.6954	0.69544472	1582	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	12	0												1					12.17	12.17	2	1.0693E-15	5027	DP690-12	235.49	196.19			0.73581	0.87686	NaN	1	0	Median	48953000	27877000	21076000	13273	1582	12370	25814	62420;62421;62422;62423;62424;62425	62423		6	9606
SQDDAMVDYFFQR	0	1	Unmodified	1620.6879	0.68785692	1283	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	11	0											1						21.335	21.335	2	0.025578	18454	DP690-11	68.355	44.978			0.84144	1.0407	NaN	1	0	Median	9738700	5329200	4409500	13274	1283	12371	25815	62426	62426		1	9606
SQDIYLR	0	1	Unmodified	893.46068	0.46068117	1129	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	15	0															2		13.146	13.146	2	0.049446	6266	DP690-15	134.44	56.689			NaN	NaN	NaN	0	0	Median	0	0	0	13275	1129	12372	25816;25817	62427;62428	62428		2	9606
SQDPPALAR	0	1	Unmodified	953.49304	0.49304393	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	0	11	0											1						11.091	11.091	2	0.0046191	3661	DP690-11	101.33	67.777			0.59643	0.6957	NaN	1	0	Median	160190000	91945000	68242000	13276	144	12373	25818	62429;62430;62431;62432;62433;62434	62430		6	9606
SQDPTPPSAPQEATEGSK	1	0	Unmodified	1825.833	0.83300084	2414	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	yes	yes	0	0	0	3	0			3														12.079	12.079	2	3.6451E-05	4767	DP690-3	145.86	104.32			NaN	NaN	NaN	0	0	Median	1913600	0	1913600	13277	2414	12374	25819;25820;25821	62435;62436;62437;62438;62439	62436		5	9606
SQDVAVSPQQQQCSK	1	0	Unmodified	1688.7788	0.7787972	1850	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	0	0	12	0												1					10.551	10.551	2	1.0093E-16	2928	DP690-12	269.44	230.57			0.79807	0.95972	NaN	1	0	Median	18324000	10081000	8243100	13278	1850	12375	25822	62440;62441;62442;62443	62440		4	9606
SQEADVQDWEFR	0	1	Unmodified	1508.6532	0.65318598	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										1							17.495	17.495	2	0.0035162	13142	DP690-10	108.9	98.595			0.57765	0.72342	NaN	1	0	Median	52275000	31953000	20322000	13279	2065	12376	25823	62444;62445	62444		2	9606
SQEATEAAPSCVGDMADTPR	0	1	Oxidation (M)	2107.8786	0.87864717	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	1	0	11.5	0.5											1	1					12.88	12.88	2	3.9215E-14	5992	DP690-12	193.31	185.32			0.59007	0.70535	NaN	1	0	Median	28770000	18037000	10733000	13280	2344	12377	25824;25825	62446;62447;62448;62449;62450	62447	2783	5	9606
SQEATEAAPSCVGDMADTPR	0	1	Unmodified	2091.8837	0.88373255	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	11.5	0.5											1	1					14.689	14.689	2	2.8624E-23	8571	DP690-12	224.06	207.12			0.67932	0.81502	NaN	1	0	Median	21059000	12021000	9038800	13281	2344	12377	25826;25827	62451;62452;62453;62454;62455	62453		5	9606
SQEDEISSPVNK	1	0	Unmodified	1331.6205	0.62048887	1446	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	10	0										1							12.475	12.475	2	0.0033714	5806	DP690-10	120.09	86.9			NaN	NaN	NaN	0	0	Median	0	0	0	13282	1446	12378	25828	62456	62456		1	9606
SQEDGHIPPGYISQEACER	0	1	Unmodified	2171.9542	0.95419538	2101	Q9H2D6	TRIOBP	TRIO and F-actin-binding protein	yes	yes	0	0	0	12	0												1					13.891	13.891	3	6.0837E-05	7426	DP690-12	112.44	89.108			0.66325	0.78873	NaN	1	0	Median	35649000	17563000	18087000	13283	2101	12379	25829	62457;62458;62459	62458		3	9606
SQEGANGEAESGELSR	0	1	Unmodified	1619.7023	0.70232101	2123	Q9H5N1	RABEP2	Rab GTPase-binding effector protein 2	yes	yes	0	0	0	4	0				1													11.132	11.132	2	0.00085189	3613	DP690-4	97.69	71.647			1.8043	2.0325	NaN	1	0	Median	1280700	493460	787250	13284	2123	12380	25830	62460;62461;62462;62463	62460		4	9606
SQENILQGFSTSHK	1	0	Unmodified	1574.7689	0.76888444	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	11	0											1						15.302	15.302	3	0.00014092	9791	DP690-11	100.11	73.756			0.95581	1.094	NaN	1	0	Median	176780000	89692000	87084000	13285	1573	12381	25831	62464;62465;62466	62464		3	9606
SQEPLPDDDEEFELPEFVEPFLK	1	0	Unmodified	2748.2694	0.26942431	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							24.934	24.934	2	5.2002E-06	22982	DP690-10	128.74	102.87			0.60575	0.72786	NaN	1	0	Median	4131500	2206900	1924600	13286	1492	12382	25832	62467;62468;62469;62470	62467		4	9606
SQFFITFR	0	1	Unmodified	1044.5393	0.53926584	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	12	0												1					19.441	19.441	2	0.057894	15235	DP690-12	110.12	73.36			0.87033	1.0139	NaN	1	0	Median	105870000	56367000	49500000	13287	1200	12383	25833	62471	62471		0	9606
SQGCSEQVLTVLK	1	0	Unmodified	1447.7341	0.73407884	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							16.358	16.358	2	3.7519E-05	11434	DP690-10	160.72	124.05			0.88468	0.98123	11.454	2	0	Median	616660000	330880000	285780000	13288	1046	12384	25834;25835	62472;62473;62474;62475;62476;62477;62478;62479;62480	62476		9	9606
SQGDMQDLNGNNQSVTR	0	1	Oxidation (M)	1878.8126	0.81261652	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	1	0	3	0			1														10.791	10.791	2	2.0473E-22	3177	DP690-3	253.97	232.19			0.71895	0.8134	NaN	1	0	Median	10008000	6008200	3999900	13289	708	12385	25836	62481;62482;62483;62484	62482	1038	4	9606
SQGDNNVSLVEEFRK	1	1	Unmodified	1720.838	0.83802663	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	1	12	0												1					15.484	15.484	3	0.0081589	9679	DP690-12	62.165	45.419			0.75558	0.83597	NaN	1	0	Median	207320000	112460000	94863000	13290	2521	12386	25837	62485;62486	62486		2	9606
SQGGEPTYNVAVGR	0	1	Unmodified	1433.6899	0.68990583	656	P35080	PFN2	Profilin-2	yes	yes	0	0	0	12	4								1								1	13.536	13.536	2	6.3018E-15	6359	DP690-8	250.7	208.51			0.79126	0.80965	14.41	2	0	Median	726490000	405800000	320700000	13291	656	12387	25838;25839	62487;62488;62489;62490;62491;62492;62493;62494;62495;62496	62496		10	9606
SQGGVQPIPSQGGK	1	0	Unmodified	1338.6892	0.68917755	2271	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	11	0											1						11.032	11.032	2	2.6883E-05	3643	DP690-11	174.23	174.23			0.88006	1.0673	NaN	1	0	Median	41435000	20224000	21211000	13292	2271	12388	25840	62497;62498;62499;62500;62501;62502	62500		6	9606
SQGMALSLGDK	1	0	Oxidation (M)	1121.5387	0.53867349	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	0	3	0			1														12.649	12.649	2	0.066703	5546	DP690-3	65.5	35.246			2.6994	2.8884	NaN	1	0	Median	14534000	3915000	10619000	13293	877	12389	25841	62503	62503		1	9606
SQICDNAALYAQK	1	0	Unmodified	1480.698	0.69802768	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														14.092	14.092	2	0.0059094	7466	DP690-3	81.865	59.084			1.126	1.1974	NaN	1	0	Median	29180000	14338000	14842000	13294	892	12390	25842	62504	62504		1	9606
SQIEKEGVEHQLR	1	1	Unmodified	1551.8005	0.80051892	1861	Q96GD4	AURKB	Aurora kinase B	yes	yes	0	0	1	14	0														1			10.494	10.494	3	0.0013897	2799	DP690-14	88.552	64.596			0.84252	1.058	NaN	1	0	Median	22134000	11888000	10247000	13295	1861	12391	25843	62505	62505		1	9606
SQIFSTASDNQPTVTIK	1	0	Unmodified	1835.9265	0.92650729	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	7.5	4.03			1	1							1	1					16.368	16.368	2	1.6235E-18	10241	DP690-4	228.7	177.91			0.89085	1.0082	25.02	4	0	Median	245420000	114810000	130610000	13296	462	12392	25844;25845;25846;25847	62506;62507;62508;62509;62510;62511;62512;62513;62514;62515;62516;62517;62518;62519;62520;62521	62520		16	9606
SQIHDIVLVGGSTR	0	1	Unmodified	1480.7998	0.79979063	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	8.6	3.77				2							1	2					14.571	14.571	2;3	8.5272E-06	7918	DP690-4	129.17	129.17			1.0392	1.2549	36.839	5	0	Median	1742399999.9999998	734780000	1007599999.9999999	13297	463	12393	25848;25849;25850;25851;25852	62522;62523;62524;62525;62526;62527;62528;62529;62530;62531;62532;62533;62534;62535;62536;62537;62538;62539	62538		18	9606
SQLDIIIHSLK	1	0	Unmodified	1265.7343	0.73433683	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	3	0			1														18.797	18.797	3	0.0032818	13655	DP690-3	79.23	54.878			3.1443	3.381	NaN	1	0	Median	17109000	3737700	13372000	13298	480	12394	25853	62540;62541	62540		2	9606
SQLDIIIHSLKK	2	0	Unmodified	1393.8293	0.82929985	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	1	7	4			1								1						17.059	17.059	3	0.00034375	11394	DP690-3	103.21	73.914			1.6488	1.8315	93.89	2	0	Median	140660000	67895000	72769000	13299	480	12395	25854;25855	62542;62543;62544;62545;62546;62547;62548	62548		7	9606
SQLGAHHTTPVGDGAAGTR	0	1	Unmodified	1831.8925	0.89252182	1412	Q5BJD5	TMEM41B	Transmembrane protein 41B	yes	yes	0	0	0	15	0															1		10.251	10.251	3	0.00011734	2584	DP690-15	105.5	105.5			0.93651	1.0804	NaN	1	0	Median	7399400	4275600	3123800	13300	1412	12396	25856	62549;62550;62551	62549		3	9606
SQLLAPPPPSAPPGNK	1	0	Unmodified	1569.8515	0.85149185	801	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	10	0										1							14.36	14.36	2	0.0024259	8624	DP690-10	124.48	79.126			NaN	NaN	NaN	0	0	Median	25030000	25030000	0	13301	801	12397	25857	62552;62553;62554	62553		3	9606
SQLLGSAHEVQR	0	1	Unmodified	1323.6895	0.6895119	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							11.314	11.314	2	0.0051348	4102	DP690-10	117.25	66.446			NaN	NaN	NaN	0	0	Median	21656000	21656000	0	13302	1236	12398	25858	62555;62556	62556		2	9606
SQLLQYVYNLVPR	0	1	Unmodified	1591.8722	0.8722273	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	11	0											2						23.221	23.221	2	2.0207E-05	20667	DP690-11	180.09	141.31			0.78078	0.94632	8.7153	2	0	Median	46772000	25802000	20970000	13303	651	12399	25859;25860	62557;62558;62559;62560;62561;62562;62563	62557		7	9606
SQLLSYIDR	0	1	Unmodified	1093.5768	0.57677356	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	11	0											3						17.41	17.41	2	0.011526	12925	DP690-11	110.41	68.978			NaN	NaN	NaN	0	0	Median	150130000	0	150130000	13304	653	12400	25861;25862;25863	62564;62565;62566;62567	62565		4	9606
SQLNSQSVEITK	1	0	Unmodified	1332.6885	0.68850885	221	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	3	0			1														13.082	13.082	2	0.008108	6144	DP690-3	77.674	77.674			1.3085	1.3731	NaN	1	0	Median	5410900	2531800	2879100	13305	221	12401	25864	62568	62568		1	9606
SQMLAMNIEK	1	0	2 Oxidation (M)	1195.5577	0.55769437	920	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	2	0	13	0													1				11.283	11.283	2	0.016697	3721	DP690-13	81.338	59.252			1.1328	1.2925	NaN	1	0	Median	10009000	4876000	5132700	13306	920	12402	25865	62569	62569	1414;1415	1	9606
SQNEAVCEGLR	0	1	Unmodified	1261.5721	0.57209888	183	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	0	0	12	0												1					12.09	12.09	2	9.5554E-05	4856	DP690-12	131.12	95.847			1.2881	1.5294	NaN	1	0	Median	54934000	20503000	34431000	13307	183	12403	25866	62570;62571;62572;62573;62574	62571		5	9606
SQNIVTDSSSLSAEAIR	0	1	Unmodified	1776.8854	0.88537076	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	9	0									1								16.883	16.883	2	1.2877E-07	10946	DP690-9	167.89	167.89			0.58937	0.73763	NaN	1	0	Median	4644900	2667100	1977800	13308	1080	12404	25867	62575;62576;62577	62575		3	9606
SQNVMAAASIANIVK	1	0	Unmodified	1515.8079	0.80791248	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	12	0												1					18.723	18.723	2	0.00042931	14187	DP690-12	108.56	108.56			0.87776	1.0549	NaN	1	0	Median	25692000	13919000	11774000	13309	520	12405	25868	62578;62579;62580;62581	62578		4	9606
SQNVMAAASIANIVK	1	0	Oxidation (M)	1531.8028	0.8028271	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	1	0	4	0				1													16.992	16.992	2	2.2258E-05	11159	DP690-4	130.56	96.689			1.6679	1.7972	NaN	1	0	Median	34318000	12613000	21706000	13310	520	12405	25869	62582;62583;62584;62585	62585	669	4	9606
SQPDPVDTPTSSKPQSK	2	0	Unmodified	1797.8745	0.87447172	749	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	9	0									1								10.34	10.34	3	0.00013095	2553	DP690-9	109.1	94.18			0.56705	0.68854	NaN	1	0	Median	7164700	4283900	2880800	13311	749	12406	25870	62586;62587;62588;62589	62586		4	9606
SQPEPSPVLSQLSQR	0	1	Unmodified	1651.8529	0.85294842	1439	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	10	0										1							16.348	16.348	2	0.00097606	11570	DP690-10	98.368	98.368			0.71951	0.90103	NaN	1	0	Median	56125000	33135000	22990000	13312	1439	12407	25871	62590;62591	62590		2	9606
SQPERDWVLNEFR	0	2	Unmodified	1674.8114	0.81141795	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	1	11.3	0.471											2	1					17.596	17.596	3	0.0072339	13203	DP690-11	71.529	38.334			0.77042	0.91082	0.58802	2	0	Median	392450000	224780000	167670000	13313	1793	12408	25872;25873;25874	62592;62593;62594;62595;62596;62597	62592		6	9606
SQPNHTPAGPPGPSSNPVSNGK	1	0	Unmodified	2126.0141	0.01409352	1970	Q9BQ15	NABP2	SOSS complex subunit B1	yes	yes	0	0	0	15	0															1		10.748	10.748	3	8.9248E-07	3163	DP690-15	135.23	135.23			0.40736	0.48062	NaN	1	0	Median	20940000	13941000	6998900	13314	1970	12409	25875	62598;62599;62600;62601	62598		4	9606
SQPVYIQYSNHR	0	1	Unmodified	1490.7266	0.72662569	338	O95758	PTBP3	Polypyrimidine tract-binding protein 3	yes	yes	0	0	0	13	0													1				12.718	12.718	3	0.0088217	5556	DP690-13	69.216	49.086			0.75367	0.91452	NaN	1	0	Median	54760000	33983000	20776000	13315	338	12410	25876	62602;62603	62602		2	9606
SQQDPAGPGLPAQSDR	0	1	Unmodified	1622.7649	0.76486169	1198	Q13322	GRB10	Growth factor receptor-bound protein 10	yes	yes	0	0	0	12	0												1					12.702	12.702	2	3.4816E-06	5775	DP690-12	137.81	100.21			0.69003	0.83964	NaN	1	0	Median	12321000	8987700	3333100	13316	1198	12411	25877	62604;62605	62604		2	9606
SQQERDWVLNEFK	1	1	Unmodified	1677.8111	0.8110836	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	12	0												3					17.222	17.222	2;3	3.047E-06	12130	DP690-12	151.13	83.423			0.71298	0.8263	NaN	1	0	Median	123450000	82095000	41358000	13317	517	12412	25878;25879;25880	62606;62607;62608;62609;62610	62608		5	9606
SQQLDSNVTMPK	1	0	Oxidation (M)	1362.6449	0.64492948	117	O14893	GEMIN2	Gem-associated protein 2	yes	yes	0	1	0	15	0															1		11.523	11.523	2	0.00074119	4141	DP690-15	113.69	77.305			0.96664	1.1399	NaN	1	0	Median	16589000	7972900	8615800	13318	117	12413	25881	62611;62612;62613;62614	62614	125	4	9606
SQQQQLVESLHK	1	0	Unmodified	1423.7419	0.74194141	1539	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	12	0												1					12.928	12.928	3	0.00011541	6042	DP690-12	117.27	89.215			0.68737	0.79469	NaN	1	0	Median	115390000	66770000	48621000	13319	1539	12414	25882	62615;62616;62617	62615		3	9606
SQQYEQAADAELAWVAETK	1	0	Unmodified	2136.9964	0.99637777	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								20.264	20.264	2	0.0068635	15149	DP690-9	115.78	92.266			NaN	NaN	NaN	0	0	Median	0	0	0	13320	2411	12415	25883	62618	62618		1	9606
SQSFSEAEPQLPPAPVR	0	1	Unmodified	1838.9163	0.91627696	2162	Q9HBL0	TNS1	Tensin-1	yes	yes	0	0	0	10	0										1							16.582	16.582	2	0.00059772	11828	DP690-10	148.13	105.89			NaN	NaN	NaN	0	0	Median	0	0	0	13321	2162	12416	25884	62619	62619		1	9606
SQSPAASDCSSSSSSASLPSSGR	0	1	Unmodified	2198.9346	0.93458215	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	7.5	3.5				1							1						11.846	11.846	2	2.6472000000000002E-24	4373	DP690-4	210.2	197.84			0.84337	0.97741	NaN	1	0	Median	12918000	10859000	2059000	13322	342	12417	25885;25886	62620;62621;62622;62623;62624	62624		5	9606
SQSQLLNTLTK	1	0	Unmodified	1231.6772	0.67721588	1461	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	11	0											1						16.034	16.034	2	0.011139	10893	DP690-11	76.282	36.345			1.5753	1.9119	NaN	1	0	Median	40320000	16108000	24211000	13323	1461	12418	25887	62625	62625		1	9606
SQSSHSYDDSTLPLIDR	0	1	Unmodified	1919.8861	0.88609904	216	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	11	0											2						15.734	15.734	3	8.1316E-05	10427	DP690-11	113.28	83.935			0.67956	0.81861	10.676	2	0	Median	162930000	96387000	66542000	13324	216	12419	25888;25889	62626;62627;62628;62629;62630;62631	62627		6	9606
SQSSIVPEEEQAANK	1	0	Unmodified	1615.7689	0.76894402	1808	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	13	0													2				12.991	12.991	2	0.0062285	5971	DP690-13	127.56	73.415			NaN	NaN	NaN	0	0	Median	0	0	0	13325	1808	12420	25890;25891	62632;62633	62633		2	9606
SQSSIVPEEEQAANKGEEK	2	0	Unmodified	2058.9706	0.97055695	1808	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	1	13	0													2				12.183	12.183	2;3	4.0570999999999997E-19	4901	DP690-13	186.77	122.91			0.72901	0.81178	NaN	1	0	Median	108980000	64165000	44811000	13326	1808	12421	25892;25893	62634;62635;62636;62637;62638	62638		5	9606
SQTDVYNDSTNLACR	0	1	Unmodified	1742.753	0.75297638	2317	Q9UBP0	SPAST	Spastin	yes	yes	0	0	0	12	0												1					14.191	14.191	2	9.6949E-15	7842	DP690-12	225.15	190.94			0.85028	1.014	NaN	1	0	Median	31712000	17162000	14549000	13327	2317	12422	25894	62639;62640	62639		2	9606
SQTGVGELTTQNTR	0	1	Unmodified	1490.7325	0.73249893	1816	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	11	0											1						12.839	12.839	2	0.0031733	6201	DP690-11	129.74	72.593			NaN	NaN	NaN	0	0	Median	0	0	0	13328	1816	12423	25895	62641	62641		1	9606
SQVDAQLLTVQK	1	0	Unmodified	1328.73	0.72997974	238	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	11	0											1						15.52	15.52	2	0.022656	10131	DP690-11	96.113	58.605			NaN	NaN	NaN	0	0	Median	25776000	0	25776000	13329	238	12424	25896	62642	62642		1	9606
SQVEEELFSVR	0	1	Unmodified	1321.6514	0.65139506	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.8	0.4									1	4							18.095	18.095	2	2.6367E-08	13971	DP690-10	204.34	138.87			0.8336	0.95056	6.7261	2	0	Median	426040000	187240000	238810000	13330	1319	12425	25897;25898;25899;25900;25901	62643;62644;62645;62646;62647;62648;62649;62650;62651;62652;62653;62654;62655	62647		13	9606
SQVFSTAADGQTQVEIK	1	0	Unmodified	1807.8952	0.89520716	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	9	3.56				1							1	1					15.68	15.68	2	5.5274E-08	9938	DP690-12	174.46	174.46			1.5327	1.7479	67.838	2	0	Median	48109000	24820000	23289000	13331	695	12426	25902;25903;25904	62656;62657;62658;62659;62660;62661;62662;62663	62657		8	9606
SQVGFQQVGVETYGGGIWSTWFDRDLTLAGR	0	2	Unmodified	3429.6742	0.67420278	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	1	5	0					1												23.182	23.182	3	2.1286E-06	18217	DP690-5	77.169	65.786			0.70711	0.69833	NaN	1	0	Median	8453900	4463700	3990100	13332	2385	12427	25905	62664;62665;62666;62667;62668	62665		5	9606
SQVMDEATALQLR	0	1	Oxidation (M)	1476.7242	0.72424243	1319	Q15149	PLEC	Plectin	yes	yes	0	1	0	8.2	3.19		1							2	1	1						15.787	15.787	2	3.4897E-05	9428	DP690-9	179.42	140.85			0.86778	1.019	7.7419	2	0	Median	282500000	158150000	124360000	13333	1319	12428	25906;25907;25908;25909;25910	62669;62670;62671;62672;62673;62674;62675;62676;62677;62678;62679;62680;62681;62682	62680	2036	14	9606
SQVMDEATALQLR	0	1	Unmodified	1460.7293	0.72932781	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.5	0.5										1	1						17.439	17.439	2	0.00015183	13068	DP690-10	121.29	86.915			0.83949	0.99889	14.239	2	0	Median	373980000	205700000	168280000	13334	1319	12428	25911;25912	62683;62684;62685	62683		3	9606
SQVPAAQPTAETKPATAAVPTSQSVK	2	0	Unmodified	2564.3446	0.34459536	2380	Q9UKY1	ZHX1	Zinc fingers and homeoboxes protein 1	yes	yes	0	0	1	11	0											1						12.968	12.968	3	3.0501E-05	6349	DP690-11	119.2	119.2			0.48917	0.56727	NaN	1	0	Median	76541000	50966000	25575000	13335	2380	12429	25913	62686;62687;62688;62689;62690	62686		5	9606
SQVVAGTNYFIK	1	0	Unmodified	1325.698	0.69795133	364	P04080	CSTB	Cystatin-B	yes	yes	0	0	0	8	0								1									16.413	16.413	2	0.00018587	9602	DP690-8	163.88	136.99			0.82448	0.87155	NaN	1	0	Median	72356000	38946000	33410000	13336	364	12430	25914	62691;62692;62693;62694	62692		4	9606
SQVVFSAEELIYPDR	0	1	Unmodified	1751.873	0.87301516	1097	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	11	0											1						20.638	20.638	2	0.063306	17429	DP690-11	86.262	50.767			NaN	NaN	NaN	0	0	Median	0	0	0	13337	1097	12431	25915	62695	62695		1	9606
SQWYELQQLDSK	1	0	Acetyl (Protein N-term)	1565.7362	0.73618733	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	1	0	0	3	0			1														21.425	21.425	2	0.029506	16844	DP690-3	77.387	36.27			NaN	NaN	NaN	0	0	Median	2830700	2830700	0	13338	724	12432	25916	62696	62696		1	9606
SQYEQLAEQNR	0	1	Unmodified	1364.6321	0.6320566	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	7.09	4.85	1	2		1	1	1		1	1	1					1	1	12.863	12.863	2	5.1609E-73	5725	DP690-4	295.96	238.42		+	NaN	NaN	NaN	0	0	Median	250290000	250290000	0	13339	42	12433	25917;25918;25919;25920;25921;25922;25923;25924;25925;25926;25927	62697;62698;62699;62700;62701;62702;62703;62704;62705;62706;62707;62708;62709;62710;62711;62712;62713;62714;62715;62716;62717	62709		21	9606
SQYEQLAEQNRK	1	1	Unmodified	1492.727	0.72701962	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	7.93	4.9	1	4	2	2	2	2	2	2	1	1		1	2	2	2	2	10.977	10.977	2;3	2.2609000000000002E-34	3440	DP690-4	242.97	163.82		+	NaN	NaN	NaN	0	0	Median	1054199999.9999999	1054199999.9999999	0	13340	42	12434	25928;25929;25930;25931;25932;25933;25934;25935;25936;25937;25938;25939;25940;25941;25942;25943;25944;25945;25946;25947;25948;25949;25950;25951;25952;25953;25954;25955	62718;62719;62720;62721;62722;62723;62724;62725;62726;62727;62728;62729;62730;62731;62732;62733;62734;62735;62736;62737;62738;62739;62740;62741;62742;62743;62744;62745;62746;62747;62748;62749;62750;62751;62752;62753;62754;62755;62756;62757;62758;62759;62760;62761;62762;62763;62764;62765;62766;62767;62768;62769;62770;62771;62772;62773	62754		56	9606
SQYGLPEDAIVYCNFNQLYK	1	0	Unmodified	2421.1311	0.13109711	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	11	0											1						21.283	21.283	2	1.8635E-09	18338	DP690-11	145.83	125.05			0.86592	1.0656	NaN	1	0	Median	19007000	9537900	9469500	13341	149	12435	25956	62774;62775	62774		2	9606
SRAEAALEEESR	0	2	Unmodified	1346.6426	0.64262129	1808	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	1	13	0													2				10.901	10.901	2;3	2.6767E-07	3251	DP690-13	212.9	134.79			0.73381	0.84257	3.4351	2	0	Median	102990000	57663000	45330000	13342	1808	12436	25957;25958	62776;62777;62778;62779;62780;62781;62782;62783	62780		8	9606
SRAEAESMYQIK	1	1	Unmodified	1411.6766	0.67656396	38	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	13	0													1				12.387	12.387	2	0.042964	5143	DP690-13	105.13	42.671		+	NaN	NaN	NaN	0	0	Median	8517500	8517500	0	13343	38	12437	25959	62784	62784		1	9606
SRAEAESWYR	0	2	Unmodified	1253.5789	0.57889882	26	CON__O43790;CON__Q14533;O43790;Q14533;CON__Q6NT21;CON__P78385;CON__P78386;A6NCN2;P78385;P78386;CON__Q61726	KRT86;KRT81;KRT87P;KRT83;KRT85	Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb1;Putative keratin-87 protein;Keratin, type II cuticular Hb3;Keratin, type II cuticular Hb5	yes	no	0	0	1	7	0							1										12.021	12.021	2	0.0012411	4657	DP690-7	123.79	69.185		+	0.71274	0.73125	NaN	1	0	Median	30809000	18474000	12336000	13344	26	12438	25960	62785;62786;62787;62788	62787		4	9606
SRDCAVLSAIIDLIK	1	1	Unmodified	1672.9182	0.91819121	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	1	11	0											2						23.536	23.536	3	0.014308	21152	DP690-11	86.367	62.684			NaN	NaN	NaN	0	0	Median	0	0	0	13345	2105	12439	25961;25962	62789;62790	62789		2	9606
SREDAGDNDDTEGAIGVR	0	2	Unmodified	1875.8195	0.81947604	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	1	9	4					2								2				12.086	12.086	2;3	7.9612E-29	4729	DP690-13	253.79	227.08			0.80511	0.92444	2.9538	2	0	Median	349080000	190660000	158410000	13346	2090	12440	25963;25964;25965;25966	62791;62792;62793;62794;62795;62796;62797;62798;62799;62800	62796		10	9606
SREIFLSQPILLELEAPLK	1	1	Unmodified	2195.2566	0.25655562	963;683;964	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	1	10	4						1								1			22.234	22.234	3	8.2245E-07	18465	DP690-14	136.33	124.67			0.72132	0.90734	NaN	1	0	Median	32469000	15610000	16860000	13347	963;964;683	12441	25967;25968	62801;62802;62803;62804;62805;62806	62801		6	9606
SREQSSEAAETGVSENEENPVR	0	2	Unmodified	2404.0739	0.073852823	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	1	12	2										1				1			12.126	12.126	3	4.3188E-37	5292	DP690-10	231.41	216.8			0.89852	1.0702	NaN	1	0	Median	136400000	71896000	64499000	13348	1377	12442	25969;25970	62807;62808;62809;62810;62811	62807		5	9606
SREYQLNDSASYYLNDLDR	0	2	Unmodified	2321.056	0.056017914	426	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	1	14	0														1			18.145	18.145	3	0.00058229	13123	DP690-14	86.439	69.373			0.86634	1.0181	NaN	1	0	Median	90888000	51235000	39654000	13349	426	12443	25971	62812;62813	62812		2	9606
SRGDNVYVVTEVLQTQK	1	1	Unmodified	1935.0062	0.0061545955	913	P57764	GSDMD	Gasdermin-D	yes	yes	0	0	1	5	0					1												17.173	17.173	3	0.0021706	10771	DP690-5	110.34	78.936			NaN	NaN	NaN	0	0	Median	22223000	0	22223000	13350	913	12444	25972	62814;62815	62814		2	9606
SRKESYSVYVYK	2	1	Unmodified	1507.7671	0.76709352	224	P57053;O60814;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;Q99880	H2BFS;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BL	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L	yes	no	0	0	2	16	0																1	11.852	11.852	3	0.00029084	4492	DP690-16	109.95	88.405			1.3041	1.4406	NaN	1	0	Median	40275000	17903000	22372000	13351	224	12445	25973	62816	62816		1	9606
SRNTDEMVELR	0	2	Unmodified	1348.6405	0.6405128	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	12	0												2					12.769	12.769	2;3	0.0016447	5784	DP690-12	89.959	62.55			0.97895	1.11	15.148	2	0	Median	311900000	156720000	155170000	13352	959	12446	25974;25975	62817;62818;62819;62820	62817		4	9606
SRPELLEYYIK	1	1	Unmodified	1409.7555	0.7554662	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	1	9.25	3.27				1					1			2					17.079	17.079	2;3	0.00069894	11241	DP690-4	123.75	71.8			0.76874	0.87676	1.3829	3	0	Median	378250000	209340000	168910000	13353	1269	12447	25976;25977;25978;25979	62821;62822;62823;62824;62825;62826;62827;62828;62829	62827		9	9606
SRPFTVAASFQSTSVK	1	1	Unmodified	1711.8893	0.88933392	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	11	0											2						14.941	14.941	2;3	2.3433E-06	9257	DP690-11	132.14	113.35			0.87425	0.94072	NaN	1	0	Median	345960000	199520000	146450000	13354	2340	12448	25980;25981	62830;62831;62832;62833;62834;62835;62836	62830		7	9606
SRQNPQSPPQDSSVTSK	1	1	Unmodified	1841.8868	0.88676774	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	1	3	0			1														10.275	10.275	3	9.6157E-08	2427	DP690-3	154.47	122.85			0.61723	0.68456	NaN	1	0	Median	93056000	56173000	36883000	13355	2316	12449	25982	62837;62838;62839;62840	62840		4	9606
SRQNPQSPPQDSSVTSKR	1	2	Unmodified	1997.9879	0.98787877	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	2	3	0			1														10.218	10.218	4	0.00021394	2386	DP690-3	113.28	96.697			0.58524	0.62268	NaN	1	0	Median	12330000	7157000	5173500	13356	2316	12450	25983	62841;62842	62841		2	9606
SRSDIDVNAAASAK	1	1	Unmodified	1403.7005	0.70047052	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	1	10	0										1							10.974	10.974	2	0.00012937	3724	DP690-10	132.14	95.696			0.81099	0.98875	NaN	1	0	Median	25010000	11343000	13667000	13357	1546	12451	25984	62843;62844;62845	62845		3	9606
SRYDSIDSYLSK	1	1	Unmodified	1432.6834	0.68342347	776	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	1	4	0				1													15.664	15.664	2	0.072797	9440	DP690-4	119.03	56.725			0.87162	0.9941	NaN	1	0	Median	6931000	3413200	3517800	13358	776	12452	25985	62846	62846		0	9606
SSACFTLQELK	1	0	Unmodified	1282.6227	0.62273747	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					17.007	17.007	2	0.00011591	11789	DP690-12	134.23	95.079			0.89375	0.99211	NaN	1	0	Median	216090000	112840000	103250000	13359	750	12453	25986	62847;62848	62848		2	9606
SSALLGAQCQGVR	0	1	Unmodified	1345.6772	0.67723266	132	O15037	KHNYN	Protein KHNYN	yes	yes	0	0	0	3.67	0.471			1	2													13.359	13.359	2	0.0033394	6533	DP690-4	122.28	73.221			NaN	NaN	NaN	0	0	Median	6051000	0	6051000	13360	132	12454	25987;25988;25989	62849;62850;62851	62851		3	9606
SSAPTTPPSVDKVDGFSR	1	1	Acetyl (Protein N-term)	1888.9167	0.91667089	1356	Q16537	PPP2R5E	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	yes	yes	1	0	1	13	0													1				16.219	16.219	2	1.2969E-05	10450	DP690-13	123.95	103.74			0.84766	1.0273	NaN	1	0	Median	11127000	6100300	5027000	13361	1356	12455	25990	62852	62852		1	9606
SSAQLSDGNVGSGATGSRPEGLAAVDIGSER	0	2	Unmodified	2944.4122	0.41223401	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	1	12	0.816											1	1	1				16.021	16.021	3	1.3623E-26	10408	DP690-12	187.78	175.82			0.71748	0.88446	8.2512	3	0	Plateau	422800000	259100000	163700000	13362	144	12456	25991;25992;25993	62853;62854;62855;62856;62857;62858;62859;62860;62861;62862;62863;62864;62865;62866;62867	62859		15	9606
SSASAPDVDDPEAFPALA	0	0	Unmodified	1758.7948	0.79482442	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	13	0													2				21.075	21.075	2	3.2398E-05	16695	DP690-13	147.3	101.42			NaN	NaN	NaN	0	0	Median	0	0	0	13363	1678	12457	25994;25995	62868;62869;62870	62868		3	9606
SSATVTGEPPSYSSGSDSSK	1	0	Unmodified	1929.844	0.84395945	673	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	10	0										1							12.342	12.342	2	0.0094764	5607	DP690-10	106.42	57.683			NaN	NaN	NaN	0	0	Median	0	0	0	13364	673	12458	25996	62871	62871		1	9606
SSAVPPGLPVYLDLCYIPNHSNSK	1	0	Unmodified	2627.3054	0.30537308	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	14	0														1			20.307	20.307	3	0.00023331	16114	DP690-14	102.19	88.289			0.70816	0.86142	NaN	1	0	Median	45180000	23762000	21419000	13365	763	12459	25997	62872;62873;62874	62874		3	9606
SSAVVVDAIPVFLEK	1	0	Unmodified	1572.8763	0.87630962	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	2	0		1															21.367	21.367	2	0.0038474	15052	DP690-2	81.92	81.92			0.83049	0.82294	NaN	1	0	Median	3066900	1783500	1283500	13366	1282	12460	25998	62875;62876	62875		2	9606
SSAYESLMEIVK	1	0	Unmodified	1355.6643	0.66426794	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	11	0											1						20.697	20.697	2	0.00045432	17498	DP690-11	113.44	85.363			0.7495	0.90704	NaN	1	0	Median	62872000	35542000	27331000	13367	1300	12461	25999	62877;62878;62879	62878		3	9606
SSAYESLMEIVK	1	0	Oxidation (M)	1371.6592	0.65918256	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	1	0	3	0			1														18.576	18.576	2	0.066895	13334	DP690-3	80.24	43.175			NaN	NaN	NaN	0	0	Median	0	0	0	13368	1300	12461	26000	62880	62880		1	9606
SSDAFTTQHALR	0	1	Unmodified	1332.6422	0.64222736	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	9.67	0.471									1	2							12.038	12.038	2;3	7.2853E-07	5183	DP690-10	164.33	76.767			0.75402	0.91307	14.336	2	0	Median	337790000	222440000	115350000	13369	311	12462	26001;26002;26003	62881;62882;62883;62884;62885;62886;62887	62884		7	9606
SSDPLGDTASNLGSAVDELMR	0	1	Oxidation (M)	2149.9797	0.97974143	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	1	0	2	0		1															20.831	20.831	2	0.002398	14378	DP690-2	84.195	59.475			1.3444	1.3752	NaN	1	0	Median	1449500	633470	816050	13370	1555	12463	26004	62888	62888	2233	1	9606
SSDQPLTVPVSPK	1	0	Unmodified	1353.714	0.71399532	2396	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	11	0											1						14.728	14.728	2	0.023292	8972	DP690-11	94.767	56.956			NaN	NaN	NaN	0	0	Median	29931000	29931000	0	13371	2396	12464	26005	62889	62889		1	9606
SSDVHSSGSSDAHMDASGPSDSDMPSR	0	1	2 Oxidation (M)	2737.0464	0.046393798	133	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	2	0	12.6	3.01									2					1	1	1	10.125	10.125	3;4	3.2431E-05	2337	DP690-9	103.02	96.518			0.56325	0.70521	38.542	4	0	Median	16578000	10040000	6537200	13372	133	12465	26006;26007;26008;26009;26010	62890;62891;62892;62893;62894;62895;62896;62897;62898;62899;62900	62899	151;152	11	9606
SSDVHSSGSSDAHMDASGPSDSDMPSR	0	1	Oxidation (M)	2721.0515	0.051479176	133	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	1	0	9	0									1								10.449	10.449	4	0.0015627	2720	DP690-9	56.468	56.468			0.85157	1.0661	NaN	1	0	Median	4963800	2524200	2439600	13373	133	12465	26011	62901	62901	151;152	1	9606
SSDVSWSDTRR	0	2	Unmodified	1294.5902	0.59019179	113	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	1	10	0										1							11.319	11.319	2	0.042009	4142	DP690-10	72.879	56.041			0.78595	0.9361	NaN	1	0	Median	24720000	15355000	9365200	13374	113	12466	26012	62902	62902		1	9606
SSEEIESAFR	0	1	Unmodified	1153.5251	0.52513192	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							15.108	15.108	2	0.0061288	9740	DP690-10	89.08	42.951			0.74339	0.9183	NaN	1	0	Median	121000000	61425000	59575000	13375	1236	12467	26013	62903	62903		1	9606
SSEIEILAVDLPK	1	0	Unmodified	1412.7763	0.77626123	2306	Q9P2K8	EIF2AK4	Eukaryotic translation initiation factor 2-alpha kinase 4	yes	yes	0	0	0	10	0										1							20.68	20.68	2	0.0015862	17693	DP690-10	135.8	89.794			NaN	NaN	NaN	0	0	Median	16270000	16270000	0	13376	2306	12468	26014	62904	62904		1	9606
SSEIEQAVQSLDR	0	1	Unmodified	1460.7107	0.71070086	1967	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	yes	yes	0	0	0	16	0																1	18.715	18.715	2	1.7496E-10	13210	DP690-16	268.77	235.68			0.87229	1.0051	NaN	1	0	Median	28564000	14863000	13700000	13377	1967	12469	26015	62905;62906;62907	62907		3	9606
SSENGALPVVSVVR	0	1	Unmodified	1412.7623	0.7623425	2461	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	15	0															1		16.686	16.686	2	0.0087616	10943	DP690-15	74.76	49.922			0.83431	0.97042	NaN	1	0	Median	25980000	13754000	12226000	13378	2461	12470	26016	62908;62909	62908		2	9606
SSENPNEVFR	0	1	Unmodified	1177.5364	0.53636531	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	3.5	0.5			1	1													13.137	13.137	2	8.7367E-05	6095	DP690-3	159.58	119.94			0.77819	0.862	18.968	2	0	Median	124290000	74207000	50087000	13379	746	12471	26017;26018	62910;62911;62912;62913;62914	62913		5	9606
SSEPPPPPQPPTHQASVGLLDTPR	0	1	Acetyl (Protein N-term)	2546.2765	0.2765158	2449	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	yes	yes	1	0	0	8	0								1									16.914	16.914	2	5.9169E-06	10242	DP690-8	101.9	91.262			NaN	NaN	NaN	0	0	Median	772590	772590	0	13380	2449	12472	26019	62915;62916;62917	62916		3	9606
SSEQILATLK	1	0	Unmodified	1088.6077	0.60773933	2403	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	12	0												1					16.104	16.104	2	8.7792E-05	10541	DP690-12	158.87	106.09			0.94921	1.062	NaN	1	0	Median	191320000	102800000	88520000	13381	2403	12473	26020	62918;62919;62920	62918		3	9606
SSESELCIETPK	1	0	Unmodified	1378.6286	0.62861071	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															14.749	14.749	2	0.00028697	7434	DP690-2	152.97	136.26			1.0695	1.0741	NaN	1	0	Median	6494200	2823400	3670800	13382	1555	12474	26021	62921;62922;62923	62922		3	9606
SSEVFTTFK	1	0	Unmodified	1044.5128	0.51277632	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	11	0											1						15.562	15.562	2	0.00077549	10219	DP690-11	134.48	75.874			1.0719	1.2495	NaN	1	0	Median	139560000	60392000	79165000	13383	701	12475	26022	62924;62925	62924		2	9606
SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK	1	0	Unmodified	3233.5153	0.5153021	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.33	0.471									2	1							20.782	20.782	3;4	4.5887E-13	15835	DP690-9	157.55	157.55			0.63657	0.74817	8.9302	3	0	Median	383470000	220590000	162890000	13384	1046	12476	26023;26024;26025	62926;62927;62928;62929;62930;62931;62932;62933;62934;62935	62931		10	9606
SSFFIEPQKPVFPETR	1	1	Unmodified	1907.9781	0.97814893	1884	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	1	11	0											1						17.869	17.869	3	0.020866	13517	DP690-11	99.055	76.145			NaN	NaN	NaN	0	0	Median	0	0	0	13385	1884	12477	26026	62936	62936		1	9606
SSFLPSYIIDVR	0	1	Unmodified	1395.7398	0.73981614	1153	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	10	0										1							20.954	20.954	2	0.0053758	18007	DP690-10	84.687	44.839			0.63308	0.79097	NaN	1	0	Median	30653000	21024000	9629100	13386	1153	12478	26027	62937;62938;62939	62937		3	9606
SSFLQVFNNSPDESSYYR	0	1	Unmodified	2138.9545	0.95451296	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	7	4			1								1						20.36	20.36	2	5.8662E-33	15572	DP690-3	267.21	239.54			0.98671	1.1578	6.4894	2	0	Median	68339000	34605000	33733000	13387	1332	12479	26028;26029	62940;62941;62942;62943	62943		4	9606
SSFREEDNTYR	0	2	Unmodified	1402.6113	0.61132116	188	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	1	11	0											1						10.787	10.787	3	3.8382E-05	3279	DP690-11	131.12	96.91			0.84691	1.044	NaN	1	0	Median	80656000	43353000	37303000	13388	188	12480	26030	62944;62945	62945		2	9606
SSFSHYSGLK	1	0	Unmodified	1111.5298	0.52982336	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	13	0													1				11.847	11.847	2	0.00015819	4441	DP690-13	134.26	83.787			0.90419	0.98512	NaN	1	0	Median	357130000	189120000	168010000	13389	1678	12481	26031	62946;62947	62947		2	9606
SSFTVDCSK	1	0	Unmodified	1029.4437	0.44371047	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8.25	3.63		1								2	1						11.915	11.915	1;2	0.00030889	5022	DP690-10	184.49	162			0.85977	0.95095	4.8671	4	0	Median	1637299999.9999998	860740000	776560000	13390	549	12482	26032;26033;26034;26035	62948;62949;62950;62951;62952;62953;62954;62955;62956;62957;62958;62959;62960	62953		13	9606
SSGAAPAPASASAPAPVPGGEAER	0	1	Unmodified	2104.0185	0.018510196	2317	Q9UBP0	SPAST	Spastin	yes	yes	0	0	0	8	4				1								1					13.213	13.213	2	1.3739E-53	6425	DP690-12	257.16	229.48			0.56019	0.67019	NaN	1	0	Median	27373000	17480000	9892700	13391	2317	12483	26036;26037	62961;62962;62963;62964;62965;62966	62962		6	9606
SSGASVTTQPTEFK	1	0	Unmodified	1438.694	0.69398816	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	13.6	0.8													3	1	1		13.05	13.05	2	5.0802E-74	5988	DP690-13	293.88	213.71			0.80616	0.91919	12.354	2	0	Median	324520000	152290000	172220000	13392	2045	12484	26038;26039;26040;26041;26042	62967;62968;62969;62970;62971;62972;62973;62974;62975	62969		9	9606
SSGEIVYCGQVFEK	1	0	Unmodified	1601.7396	0.73955814	1095	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	15	0															1		16.437	16.437	2	0.0056484	10622	DP690-15	112.64	67.486			NaN	NaN	NaN	0	0	Median	21151000	21151000	0	13393	1095	12485	26043	62976;62977	62976		2	9606
SSGFAFDPSVNYSK	1	0	Unmodified	1504.6834	0.68342347	1626	Q8IYM9	TRIM22	E3 ubiquitin-protein ligase TRIM22	yes	yes	0	0	0	12	0												3					17.489	17.489	2	0.0045257	12465	DP690-12	119.03	98.158			NaN	NaN	NaN	0	0	Median	21585000	21585000	0	13394	1626	12486	26044;26045;26046	62978;62979;62980;62981	62979		4	9606
SSGGGECTVSTQEHEAPGTFR	0	1	Unmodified	2192.9393	0.9392736	1720	Q8TDB6	DTX3L	E3 ubiquitin-protein ligase DTX3L	yes	yes	0	0	0	11	0											1						12.348	12.348	3	5.6234E-10	5428	DP690-11	146.67	124.83			0.93052	1.1183	NaN	1	0	Median	69020000	30041000	38978000	13395	1720	12487	26047	62982;62983;62984;62985;62986;62987;62988	62983		7	9606
SSGGSEHSTEGSVSLGDGQLNR	0	1	Unmodified	2159.9679	0.96793119	1520	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	11.5	0.5											1	1					12.86	12.86	3	2.3902E-15	6227	DP690-11	133.92	133.92			1.1087	1.3325	40.939	2	0	Median	128990000	66375000	62619000	13396	1520	12488	26048;26049	62989;62990;62991;62992;62993;62994;62995;62996	62992		8	9606
SSGHSSSELSPDAVEK	1	0	Unmodified	1615.7326	0.73255851	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	9	0									1								11.025	11.025	3	0.00020779	3384	DP690-9	101.39	90.441			0.86548	1.1058	NaN	1	0	Median	10972000	6358900	4613400	13397	2422	12489	26050	62997;62998;62999;63000	63000		4	9606
SSGLTAVWVAR	0	1	Unmodified	1145.6193	0.61930707	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														17.244	17.244	2	0.057138	11662	DP690-3	85.676	43.327			NaN	NaN	NaN	0	0	Median	9523400	0	9523400	13398	878	12490	26051	63001	63001		1	9606
SSGNAKIGHPAPNFK	2	0	Acetyl (Protein N-term)	1565.795	0.79503961	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	1	0	1	10	3.56							1	1							1		11.655	11.655	3	0.00022819	4320	DP690-7	105.19	80.261			0.63691	0.72942	10.234	3	0	Median	103400000	61535000	41861000	13399	1128	12491	26052;26053;26054	63002;63003;63004;63005;63006;63007;63008;63009;63010	63008		9	9606
SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMK	1	0	Oxidation (M)	3718.7129	0.71290906	1275	Q14444	CAPRIN1	Caprin-1	yes	yes	0	1	0	7	4			1								1						12.638	12.638	3	2.2316E-07	5911	DP690-11	73.077	58.031			0.7169	0.873	NaN	1	0	Median	38367000	22437000	15930000	13400	1275	12492	26055;26056	63011;63012;63013	63011	1958	3	9606
SSGPTSLFAVTVAPPGAR	0	1	Unmodified	1713.905	0.90498399	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	6.57	3.66			2	2					1		1	1					19.292	19.292	2	9.916E-14	15609	DP690-11	194.06	164.03			0.71236	0.83575	17.307	4	0	Median	346670000	193120000	153550000	13401	1078	12493	26057;26058;26059;26060;26061;26062;26063	63014;63015;63016;63017;63018;63019;63020;63021;63022;63023;63024;63025;63026;63027	63017		14	9606
SSGPYGGGGQYFAK	1	0	Unmodified	1374.6204	0.62042929	437	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	14	0														1			14.107	14.107	2	0.00272	7754	DP690-14	89.171	52.012			0.73447	0.86119	NaN	1	0	Median	180310000	106600000	73707000	13402	437	12494	26064	63028;63029	63029		2	9606
SSGPYGGGGQYFAKPR	1	1	Unmodified	1627.7743	0.77430417	437	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	14	0														2			13.021	13.021	2;3	1.3516E-11	6228	DP690-14	175.74	156.78			0.7594	0.81783	11.494	2	0	Median	1189100000	660600000	528500000	13403	437	12495	26065;26066	63030;63031;63032;63033;63034;63035;63036;63037;63038	63034		9	9606
SSGSPYGGGYGSGGGSGGYGSR	0	1	Unmodified	1909.7827	0.7826966	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	12.2	3.63						1								2	1		12.867	12.867	2	1.4228000000000001E-71	5852	DP690-14	337.03	319.82			0.73655	0.82515	19.798	2	0	Median	517500000	338230000	179270000	13404	848	12496	26067;26068;26069;26070	63039;63040;63041;63042;63043;63044;63045;63046;63047	63040		9	9606
SSGTASSVAFTPLQGLEIVNPQAAEK	1	0	Unmodified	2601.3286	0.32861095	1756	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	12	0												1					21.53	21.53	2	0.0067067	17770	DP690-12	86.016	53.091			NaN	NaN	NaN	0	0	Median	0	0	0	13405	1756	12497	26071	63048	63048		1	9606
SSGVPVDGFYTEEVR	0	1	Unmodified	1640.7682	0.76821573	1990	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	0	15.3	0.471															2	1	17.168	17.168	2	1.5259E-05	11442	DP690-16	133.05	100.83			0.87454	0.9788	17.181	3	0	Median	98774000	53857000	44917000	13406	1990	12498	26072;26073;26074	63049;63050;63051;63052;63053;63054;63055;63056;63057	63055		8	9606
SSHIVKAQDSGVR	1	1	Unmodified	1382.7266	0.72662569	2531				yes	yes	0	0	1	15	0															1		16.748	16.748	2	0.0024834	11049	DP690-15	107.15	50.425	+		0.76258	0.85585	NaN	1	0	Median	70076000	38806000	31270000	13407	2531	12499	26075	63058	63058		1	9606
SSHYDELLAAEAR	0	1	Unmodified	1460.6896	0.68957148	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	11	0											1						14.769	14.769	2	6.7904E-05	9001	DP690-11	125.23	90.505			1.0938	1.3135	NaN	1	0	Median	26540000	12580000	13959000	13408	1524	12500	26076	63059;63060	63059		2	9606
SSIAGLLLK	1	0	Unmodified	900.56442	0.56441796	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.816									1	1	1						18.431	18.431	2	0.00078464	14425	DP690-10	133.81	91.338			0.93234	0.96838	5.9276	3	0	Plateau	652210000	334380000	317830000	13409	1319	12501	26077;26078;26079	63061;63062;63063;63064;63065;63066;63067;63068;63069;63070;63071	63064		11	9606
SSIHISNLEPELR	0	1	Unmodified	1493.7838	0.78380622	2030	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	14	0														1			15.854	15.854	3	6.6646E-05	10012	DP690-14	119.25	80.248			0.76803	0.88394	NaN	1	0	Median	220320000	125110000	95206000	13410	2030	12502	26080	63072;63073;63074;63075	63075		4	9606
SSIIIKPSDPVER	1	1	Unmodified	1439.7984	0.79839365	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	1	11	0											1						13.778	13.778	3	0.0080966	7567	DP690-11	70.628	45.775			0.61298	0.72255	NaN	1	0	Median	88959000	52380000	36579000	13411	1573	12503	26081	63076;63077	63076		2	9606
SSIIVAADESTISWGPSPTFGELGYGDHKPK	2	0	Unmodified	3245.5881	0.58807311	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	1	9	0									1								19.415	19.415	3	1.0221E-13	14150	DP690-9	157.68	157.68			1.0963	1.3217	NaN	1	0	Median	9453800	5154200	4299600	13412	2298	12504	26082	63078;63079;63080	63078		3	9606
SSILAGGQPR	0	1	Unmodified	984.53524	0.53524309	2047	Q9BYB4	GNB1L	Guanine nucleotide-binding protein subunit beta-like protein 1	yes	yes	0	0	0	6	0						1											11.935	11.935	2	0.007158	4429	DP690-6	87.639	47.288			0.76114	0.86558	NaN	1	0	Median	16115000	8653800	7460800	13413	2047	12505	26083	63081;63082;63083;63084;63085	63083		5	9606
SSILLSLIDEK	1	0	Unmodified	1216.6915	0.69146896	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								21.267	21.267	2	0.00064132	16405	DP690-9	109.79	82.742			0.75526	0.94359	NaN	1	0	Median	5145500	3327500	1818000	13414	2272	12506	26084	63086;63087;63088;63089;63090	63089		5	9606
SSIRVEEIIPAAR	0	2	Unmodified	1439.8096	0.80962704	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	1	2	0		1															15.766	15.766	3	0.019526	8685	DP690-2	55.314	55.314			0.75136	0.75045	NaN	1	0	Median	5439600	2812400	2627300	13415	2418	12507	26085	63091;63092;63093;63094	63093		4	9606
SSISSVLKDPDSNPYSLLDNTESDQTADTDASESHHSTNR	1	1	Unmodified	4319.9174	0.91741835	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	12	0												1					17.369	17.369	5	2.0173E-12	12327	DP690-12	92.93	85.415			0.66439	0.79375	NaN	1	0	Median	78615000	40409000	38206000	13416	829	12508	26086	63095	63095		1	9606
SSLEWNSCVVQTLK	1	0	Unmodified	1649.8083	0.80830641	808;16;446	P49792;O14715;Q99666;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	0	9.5	0.5									1	1							18.367	18.367	2	3.9613E-11	14407	DP690-10	178.53	96.501			0.57456	0.73143	NaN	1	0	Median	39682000	4895200	34787000	13417	808;16;446	12509	26087;26088	63096;63097;63098;63099;63100	63096		5	9606
SSLGPVGLDK	1	0	Unmodified	971.52876	0.52876073	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	4	0				1													14.369	14.369	2	0.010653	7730	DP690-4	82.749	45.729			1.4929	1.5902	NaN	1	0	Median	58064000	21493000	36570000	13418	520	12510	26089	63101;63102;63103	63101		3	9606
SSLLDQNLTEEEINMK	1	0	Oxidation (M)	1878.8881	0.88807287	1102	Q03001	DST	Dystonin	yes	yes	0	1	0	9	0									1								17.52	17.52	2	0.012995	11790	DP690-9	97.463	70.123			NaN	NaN	NaN	0	0	Median	2197600	2197600	0	13419	1102	12511	26090	63104	63104	1721	1	9606
SSLLLDTVTSIPSSR	0	1	Unmodified	1574.8516	0.85155143	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	4.33	3.3		2							1								19.739	19.739	2	1.0476E-06	14563	DP690-9	186.46	148.16			0.87544	1.0928	NaN	1	0	Median	15187000	8435200	6751600	13420	1048	12512	26091;26092;26093	63105;63106;63107;63108;63109;63110;63111	63109		7	9606
SSLLLGFR	0	1	Unmodified	891.5178	0.51780212	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10	0										1							18.672	18.672	2	0.043311	14811	DP690-10	117.93	57.135			NaN	NaN	NaN	0	0	Median	0	0	0	13421	732	12513	26094	63112	63112		1	9606
SSLLTELSNSLTK	1	0	Unmodified	1391.7508	0.75077476	2314	Q9UBK9	UXT	Protein UXT	yes	yes	0	0	0	16	0																3	21.166	21.166	2	6.8211E-07	15959	DP690-16	164.43	89.212			NaN	NaN	NaN	0	0	Median	2427400	2427400	0	13422	2314	12514	26095;26096;26097	63113;63114;63115;63116;63117	63113		5	9606
SSLNPILFR	0	1	Unmodified	1045.592	0.59202969	699	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	14	0														1			17.949	17.949	2	0.019758	12896	DP690-14	79.713	24.936			0.70111	0.84541	NaN	1	0	Median	65088000	38650000	26438000	13423	699	12515	26098	63118;63119	63118		2	9606
SSLQSQCLNEVLK	1	0	Unmodified	1504.7555	0.75554256	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	2	0		1															16.472	16.472	2	7.2655E-05	9481	DP690-2	133.89	133.89			0.93907	0.94332	NaN	1	0	Median	6723700	2959500	3764200	13424	1264	12516	26099	63120;63121	63121		2	9606
SSLQYSSPAPDGCGDQTLGDLLLTPTR	0	1	Unmodified	2848.3549	0.35490205	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														21.187	21.187	2	1.2174E-32	16614	DP690-3	208.07	190.79			0.69036	0.79644	NaN	1	0	Median	19035000	11351000	7684600	13425	559	12517	26100	63122;63123;63124;63125;63126	63125		5	9606
SSLSEYAFR	0	1	Acetyl (Protein N-term)	1100.5138	0.51383895	2435	Q9Y291	MRPS33	28S ribosomal protein S33, mitochondrial	yes	yes	1	0	0	16	0																1	19.863	19.863	1	8.5235E-11	14526	DP690-16	178.99	118.19			NaN	NaN	NaN	0	0	Median	908980	908980	0	13426	2435	12518	26101	63127	63127		1	9606
SSLSNNECGSLDK	1	0	Unmodified	1409.6093	0.60927225	1446	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	10	0										1							11.477	11.477	2	0.0048844	4409	DP690-10	117.79	83.871			NaN	NaN	NaN	0	0	Median	9079300	9079300	0	13427	1446	12519	26102	63128	63128		1	9606
SSLSSAQADFNQLAELDR	0	1	Unmodified	1950.9283	0.92829821	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	11	0											1						20.273	20.273	2	2.5829E-05	16985	DP690-11	125.84	91.339			0.73201	0.88765	NaN	1	0	Median	20501000	10900000	9600200	13428	1236	12520	26103	63129;63130;63131	63131		3	9606
SSLVESDKEEQPDFLPRPTDGAASELSSIQNLNR	1	2	Unmodified	3728.8129	0.81294068	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	2	9	0									1								18.868	18.868	4	7.0372E-08	13512	DP690-9	103.42	93.535			0.53101	0.60922	NaN	1	0	Median	8160300	5254500	2905800	13429	2217	12521	26104	63132	63132		1	9606
SSMNVDEAFSSLAR	0	1	Oxidation (M)	1528.6828	0.68277155	831	P51153	RAB13	Ras-related protein Rab-13	yes	yes	0	1	0	15	0															1		17.225	17.225	2	6.4267E-05	11721	DP690-15	171.67	119.09			0.76098	0.84822	NaN	1	0	Median	79740000	42692000	37048000	13430	831	12522	26105	63133	63133	1264	1	9606
SSNPMMVLQLPER	0	1	2 Oxidation (M)	1532.7327	0.73269863	1045	P78406	RAE1	mRNA export factor	yes	yes	0	2	0	14	0														1			15.911	15.911	2	0.029337	10165	DP690-14	70.488	43.007			0.70921	0.85822	NaN	1	0	Median	47704000	27653000	20051000	13431	1045	12523	26106	63134	63134	1582;1583	1	9606
SSNPMMVLQLPER	0	1	Oxidation (M)	1516.7378	0.737784	1045	P78406	RAE1	mRNA export factor	yes	yes	0	1	0	14	0														2			17.856	17.856	2	0.0082109	12119	DP690-14	84.479	58.588			0.76359	0.9224	27.161	2	0	Median	116570000	58457000	58117000	13432	1045	12523	26107;26108	63135;63136;63137;63138;63139	63137	1582;1583	5	9606
SSPAAFINPPIGTVTPALK	1	0	Unmodified	1880.0407	0.040749188	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	13	0													1				19.607	19.607	2	4.111E-13	14771	DP690-13	180.95	180.95			0.56898	0.63763	NaN	1	0	Median	172040000	107750000	64293000	13433	2045	12524	26109	63140;63141;63142;63143	63141		4	9606
SSPEPVALTESETEYVIR	0	1	Unmodified	2005.9844	0.9844161	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	3	0			2														19.063	19.063	2	0.00018752	13872	DP690-3	157.5	89.5			NaN	NaN	NaN	0	0	Median	3832200	0	3832200	13434	2515	12525	26110;26111	63144;63145	63145		2	9606
SSPGGQDEGGFMAQGK	1	0	Oxidation (M)	1567.6573	0.65728508	786	P49023	PXN	Paxillin	yes	yes	0	1	0	4	0				1													11.104	11.104	2	0.00050345	3577	DP690-4	111.52	94.499			0.95224	1.0242	NaN	1	0	Median	5701900	2928100	2773700	13435	786	12526	26112	63146;63147	63147	1171	2	9606
SSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR	0	2	Unmodified	3483.6251	0.62508033	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	1	9	3.56				1							1	1					13.295	13.295	3	4.7678E-16	6912	DP690-11	138.93	118.65			0.39228	0.46377	41.148	2	0	Median	221720000	149710000	72006000	13436	701	12527	26113;26114;26115	63148;63149;63150;63151;63152;63153;63154;63155;63156;63157;63158;63159;63160	63151		13	9606
SSPPVQFSLLHSK	1	0	Unmodified	1425.7616	0.76161421	339	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	11	0											4						15.682	15.682	3	0.0066519	10394	DP690-11	92.65	51.935			NaN	NaN	NaN	0	0	Median	31104000	0	31104000	13437	339	12528	26116;26117;26118;26119	63161;63162;63163;63164	63161		4	9606
SSPSGPSNPSNPSVEEK	1	0	Unmodified	1698.7697	0.7696723	1765	Q8WY22	BRI3BP	BRI3-binding protein	yes	yes	0	0	0	16	0																2	10.672	10.672	2	8.6357E-05	3219	DP690-16	122.46	106.54			0.47	0.54708	NaN	1	0	Median	2250400	1561500	688900	13438	1765	12529	26120;26121	63165;63166;63167	63165		3	9606
SSPSVKPAVDPAAAK	2	0	Unmodified	1423.7671	0.76709352	1470	Q6FI81	CIAPIN1	Anamorsin	yes	yes	0	0	1	6	0						1											10.702	10.702	3	0.049359	3173	DP690-6	48.391	25.61			0.5571	0.57592	NaN	1	0	Median	5245300	3341600	1903800	13439	1470	12530	26122	63168;63169;63170;63171	63170		4	9606
SSPTVYNSPTDKEDYMTDLR	1	1	Oxidation (M)	2334.0322	0.032170929	1926	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	1	1	12	0												1					14.186	14.186	3	0.0027618	7871	DP690-12	101.23	67.978			NaN	NaN	NaN	0	0	Median	41254000	41254000	0	13440	1926	12531	26123	63172;63173	63173	2459	2	9606
SSQEIETSSCLDSLSSK	1	0	Unmodified	1856.831	0.83095193	164	O43166	SIPA1L1	Signal-induced proliferation-associated 1-like protein 1	yes	yes	0	0	0	10	0										1							15.545	15.545	2	0.012704	10381	DP690-10	99.941	62.614			NaN	NaN	NaN	0	0	Median	12377000	0	12377000	13441	164	12532	26124	63174	63174		1	9606
SSQIGAVVSHQSSVIPDREYLR	0	2	Unmodified	2427.2506	0.2506354	2239	Q9NVS9	PNPO	Pyridoxine-5'-phosphate oxidase	yes	yes	0	0	1	7	0							1										15.544	15.544	3	0.0028352	8950	DP690-7	64.5	64.5			0.74159	0.76085	NaN	1	0	Median	26052000	13871000	12181000	13442	2239	12533	26125	63175;63176;63177	63175		3	9606
SSQPQAGSQGPQTFR	0	1	Unmodified	1574.7437	0.74373232	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	10	3.95				1					2			1				1	11.614	11.614	2	1.3133E-14	4345	DP690-12	223.08	184.12			0.63443	0.73339	11.127	2	0	Median	132410000	79444000	52968000	13443	1200	12534	26126;26127;26128;26129;26130	63178;63179;63180;63181;63182;63183;63184;63185;63186;63187;63188;63189;63190;63191	63184		14	9606
SSQSSSQQFSGIGR	0	1	Unmodified	1454.675	0.67498405	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11.9	3.41				1					1		1	1	2	1	1	1	12.779	12.779	2	1.9754999999999999E-19	5835	DP690-12	291.24	243.15			0.86435	0.99742	14.183	6	0	Median	1037199999.9999999	551520000	485680000	13444	1793	12535	26131;26132;26133;26134;26135;26136;26137;26138;26139	63192;63193;63194;63195;63196;63197;63198;63199;63200;63201;63202;63203;63204;63205;63206;63207;63208;63209;63210;63211;63212;63213;63214;63215;63216;63217	63199		25	9606
SSQTSGTNEQSSAIVSAR	0	1	Unmodified	1808.85	0.85004788	221	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	3	0			1														11.818	11.818	2	6.2173E-17	4439	DP690-3	206.2	182.59			0.80283	0.88823	NaN	1	0	Median	5009400	3046800	1962600	13445	221	12536	26140	63218;63219;63220;63221	63219		4	9606
SSRPSMDSEGGSLLLDEDSEVFK	1	1	Oxidation (M)	2500.1275	0.12752788	1885	Q96JY6	PDLIM2	PDZ and LIM domain protein 2	yes	yes	0	1	1	14	0														1			17.857	17.857	3	0.00022127	12807	DP690-14	105.17	105.17			0.80342	0.98788	NaN	1	0	Median	53675000	26457000	27218000	13446	1885	12537	26141	63222;63223	63222	2434	2	9606
SSSDTNESEIKSNEEPLLR	1	1	Unmodified	2134.0026	0.0025853601	1535	Q7LG56	RRM2B	Ribonucleoside-diphosphate reductase subunit M2 B	yes	yes	0	0	1	11.3	3.77						1								2			14.04	14.04	3	5.4716E-11	7014	DP690-6	160.93	143.93			0.68708	0.77001	NaN	1	0	Median	25166000	13581000	11585000	13447	1535	12538	26142;26143;26144	63224;63225;63226;63227;63228;63229;63230	63230		7	9606
SSSGFVGLR	0	1	Unmodified	908.47158	0.4715802	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															14.147	14.147	2	0.012214	6695	DP690-2	87.323	35.535			1.0495	1.0944	NaN	1	0	Median	22307000	10608000	11699000	13448	2418	12539	26145	63231;63232	63232		2	9606
SSSGLGSSGSLSQK	1	0	Unmodified	1280.6208	0.62082322	1343	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	0	0	0	10	0										1							11.009	11.009	2	0.011143	3725	DP690-10	103.43	40.969			NaN	NaN	NaN	0	0	Median	14357000	0	14357000	13449	1343	12540	26146	63233	63233		1	9606
SSSGLLEWESK	1	0	Unmodified	1221.5877	0.58773217	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	11	1.41									1			2					17.072	17.072	2	0.00018419	11788	DP690-12	170.5	170.5			0.6393	0.73997	18.79	2	0	Median	565090000	283870000	281220000	13450	494	12541	26147;26148;26149	63234;63235;63236;63237;63238;63239	63234		6	9606
SSSPAPADIAQTVQEDLR	0	1	Unmodified	1883.9225	0.92248455	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	12	0												1					19.755	19.755	2	4.6123E-05	15540	DP690-12	142.39	110.67			NaN	NaN	NaN	0	0	Median	38418000	38418000	0	13451	1196	12542	26150	63240;63241	63240		2	9606
SSSSASQSNHSCTSMPSSPATPASGTK	1	0	Oxidation (M)	2654.1184	0.11843653	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	1	0	9	0									1								10.211	10.211	3	6.8058E-25	2419	DP690-9	193.93	152.63			0.54928	0.70209	NaN	1	0	Median	11451000	7231900	4218800	13452	2411	12543	26151	63242;63243;63244;63245;63246	63244	2836	5	9606
SSSSSSASAAAAAAAASSSASCSR	0	1	Unmodified	2088.8978	0.89780271	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	12	0												1					13.85	13.85	2	2.6366E-53	7325	DP690-12	249.89	219.06			0.82935	0.99062	NaN	1	0	Median	29687000	16119000	13569000	13453	1131	12544	26152	63247;63248;63249;63250	63247		4	9606
SSSSSSQPEHSAMLVSTAASPSLIK	1	0	Oxidation (M)	2504.2064	0.2064469	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	1	0	11	0											1						15.011	15.011	3	2.0937E-05	9452	DP690-11	108.57	80.23			NaN	NaN	NaN	0	0	Median	15808000	15808000	0	13454	723	12545	26153	63251;63252	63251	1064	2	9606
SSSSTNTSLLTSK	1	0	Unmodified	1311.6518	0.65178899	2258	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	12	0												2					12.435	12.435	2	0.014475	5353	DP690-12	101.3	39.516			NaN	NaN	NaN	0	0	Median	11718000	11718000	0	13455	2258	12546	26154;26155	63253;63254	63253		2	9606
SSSSVSSQGSVASSTGSPASIR	0	1	Unmodified	2024.9611	0.9610549	2119	Q9H4H8	FAM83D	Protein FAM83D	yes	yes	0	0	0	12	0												3					12.863	12.863	2	8.4863E-20	5970	DP690-12	199.15	154.53			NaN	NaN	NaN	0	0	Median	0	0	0	13456	2119	12547	26156;26157;26158	63255;63256;63257	63255		3	9606
SSSSVTTSETQPCTPSSSDYSDLQR	0	1	Unmodified	2706.1563	0.15626182	821	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	13	0													2				14.643	14.643	2;3	8.8716E-54	8203	DP690-13	257.37	238.91			0.79025	0.95563	NaN	1	0	Median	72940000	44447000	28493000	13457	821	12548	26159;26160	63258;63259;63260;63261;63262;63263	63261		6	9606
SSSSYHTWNTGTEGPFVER	0	1	Unmodified	2140.945	0.9450109	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0										1							15.311	15.311	3	0.00023221	9988	DP690-10	94.325	74.935			0.92929	1.1498	NaN	1	0	Median	110490000	61272000	49215000	13458	1724	12549	26161	63264	63264		1	9606
SSSVGSSSSYPISPAVSR	0	1	Unmodified	1753.8483	0.84825697	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.5	4.03		1							1	1			1				14.478	14.478	2	9.6065E-23	7892	DP690-9	276.41	248.08			0.69382	0.85497	8.9981	3	0	Median	232260000	133700000	98563000	13459	1319	12550	26162;26163;26164;26165	63265;63266;63267;63268;63269;63270;63271;63272;63273;63274;63275;63276;63277	63277		13	9606
SSTAISSIAADGEFLHELEEK	1	0	Unmodified	2233.075	0.075022022	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	9.71	3.1			1						1	2	2			1			20.509	20.509	2;3	2.9877000000000003E-29	17372	DP690-10	214.46	192.02			0.84162	0.94634	9.9381	5	0	Median	850510000	463480000	387040000	13460	272	12551	26166;26167;26168;26169;26170;26171;26172	63278;63279;63280;63281;63282;63283;63284;63285;63286;63287;63288;63289;63290;63291;63292;63293;63294;63295;63296;63297	63283		20	9606
SSTDFSELEQPR	0	1	Unmodified	1394.6314	0.6313879	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	11	0											1						15.599	15.599	2	0.017988	10267	DP690-11	72.2	34.725			0.85768	1.0083	NaN	1	0	Median	144730000	84841000	59884000	13461	1573	12552	26173	63298	63298		1	9606
SSTETCYSAIPK	1	0	Unmodified	1342.6075	0.60748134	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	8	3.54		1							1	1	1						13.359	13.359	2	0.0014677	7047	DP690-10	100.48	79.505			0.75601	0.86467	12.411	4	0	Median	441240000	238670000	202570000	13462	250	12553	26174;26175;26176;26177	63299;63300;63301;63302;63303	63299		5	9606
SSTGPEPPAPTPLLAER	0	1	Unmodified	1718.8839	0.88391419	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	9	0									1								16.388	16.388	2	0.0002591	10344	DP690-9	112.02	85.274			0.85796	1.0714	NaN	1	0	Median	13209000	6675200	6533800	13463	2422	12554	26178	63304;63305;63306;63307	63306		4	9606
SSTLGPSALK	1	0	Unmodified	959.52876	0.52876073	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	13	0													1				12.761	12.761	2	0.0030435	5651	DP690-13	95.358	42.955			0.81588	0.92849	NaN	1	0	Median	115480000	61849000	53627000	13464	229	12555	26179	63308;63309;63310	63310		3	9606
SSTPAQLAFMR	0	1	Unmodified	1207.6019	0.60194245	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	11	0											1						16.803	16.803	2	0.045	12080	DP690-11	63.816	26.625			0.60945	0.73131	NaN	1	0	Median	62010000	37378000	24632000	13465	837	12556	26180	63311;63312	63311		2	9606
SSTPLHSPSPIR	0	1	Unmodified	1277.6728	0.67279921	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	4	0				1													11.449	11.449	3	0.057253	3820	DP690-4	77.124	45.975			0.76213	0.88778	NaN	1	0	Median	11316000	6461400	4854200	13466	342	12557	26181	63313	63313		0	9606
SSTPLPTISSSAENTR	0	1	Unmodified	1646.8111	0.81114318	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	12.5	1.12											1	1	1	1			14.761	14.761	2	5.4245E-07	8560	DP690-12	156.08	114.92			0.61998	0.72872	16.882	2	0	Median	292100000	159180000	132920000	13467	723	12558	26182;26183;26184;26185	63314;63315;63316;63317;63318;63319;63320;63321;63322;63323;63324;63325;63326	63319		13	9606
SSTTSMTSVPKPLK	2	0	Oxidation (M)	1478.765	0.76504461	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	1	1	3	0			1														10.623	10.623	3	0.0066304	2946	DP690-3	70.373	41.733			0.70289	0.7596	NaN	1	0	Median	21858000	13935000	7922600	13468	1190	12559	26186	63327	63327	1845	1	9606
SSTVAPAQPDGAESEWTDVETR	0	1	Unmodified	2332.0455	0.045512807	1092	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	11	0											1						16.699	16.699	2	2.4533E-23	11875	DP690-11	203.2	165			0.75033	0.89563	NaN	1	0	Median	33863000	19776000	14087000	13469	1092	12560	26187	63328;63329	63329		2	9606
SSVAVLTQESFAEHR	0	1	Acetyl (Protein N-term)	1701.8322	0.83221298	1071	Q00341	HDLBP	Vigilin	yes	yes	1	0	0	10	0										2							18.836	18.836	2	8.8244E-07	15179	DP690-10	217.22	158.07			0.50683	0.59325	NaN	1	0	Median	277450000	156490000	120960000	13470	1071	12561	26188;26189	63330;63331;63332;63333;63334	63334		5	9606
SSVLIAQQTDTSDPEK	1	0	Unmodified	1717.837	0.83702358	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	11.9	5.46			1	1								1				4	13.888	13.888	2	3.4409E-22	7349	DP690-12	236.08	197.12			0.83692	0.90012	16.161	3	0	Median	151060000	80673000	70386000	13471	750	12562	26190;26191;26192;26193;26194;26195;26196	63335;63336;63337;63338;63339;63340;63341;63342;63343;63344;63345;63346;63347;63348	63335		14	9606
SSVLQVSVLQSTK	1	0	Unmodified	1374.7718	0.77184455	1477	Q6L8Q7	PDE12	2',5'-phosphodiesterase 12	yes	yes	0	0	0	4	0				1													16.997	16.997	2	0.060828	11220	DP690-4	57.175	57.175			1.402	1.503	NaN	1	0	Median	4305100	1720100	2585000	13472	1477	12563	26197	63349	63349		1	9606
SSVQEECVSTISSSK	1	0	Unmodified	1626.7407	0.74068036	1525	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	14	0														1			13.035	13.035	2	0.021354	6156	DP690-14	104.94	64.999			NaN	NaN	NaN	0	0	Median	0	0	0	13473	1525	12564	26198	63350	63350		1	9606
SSVQEECVSTISSSKDEDPLAATR	1	1	Unmodified	2595.197	0.19700443	1525	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	1	14	0														1			15.504	15.504	3	6.9599E-12	9522	DP690-14	184.91	158.45			NaN	NaN	NaN	0	0	Median	37355000	37355000	0	13474	1525	12565	26199	63351;63352;63353	63351		3	9606
SSYYMIGEQK	1	0	Oxidation (M)	1220.5383	0.53833914	703	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	1	0	7	0							1										13.49	13.49	2	0.021529	6528	DP690-7	79.489	61.227			1.0129	1.086	NaN	1	0	Median	59060000	30514000	28546000	13475	703	12566	26200	63354;63355	63354	1033	2	9606
SSYYVVSGNDPAAEEPSR	0	1	Unmodified	1926.8595	0.85954994	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	14	0														1			14.959	14.959	2	4.6986000000000004E-33	8782	DP690-14	270.21	252.73			0.80479	0.96537	NaN	1	0	Median	89915000	51151000	38764000	13476	763	12567	26201	63356;63357;63358;63359	63358		4	9606
STACQMLVCYAK	1	0	Oxidation (M)	1446.6305	0.63054174	82	O00410	IPO5	Importin-5	yes	yes	0	1	0	3	0			1														14.571	14.571	2	0.012631	8148	DP690-3	78.934	55.562			1.1994	1.2656	NaN	1	0	Median	8527100	4259100	4268100	13477	82	12568	26202	63360;63361	63360	96	2	9606
STADSGGEGLETAPK	1	0	Unmodified	1418.6525	0.65251728	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	9	0									1								11.568	11.568	2	0.00025904	4059	DP690-9	144.7	86.265			NaN	NaN	NaN	0	0	Median	1988700	1988700	0	13478	1696	12569	26203	63362;63363;63364	63362		3	9606
STAELEAEELEK	1	0	Unmodified	1347.6406	0.64055561	2396	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	11	0											1						15.17	15.17	2	0.063418	9618	DP690-11	73.9	49.381			1.0855	1.3154	NaN	1	0	Median	69113000	36667000	32446000	13479	2396	12570	26204	63365	63365		1	9606
STAELEAEELEKLQQYK	2	0	Unmodified	2008.0001	6.61646E-05	2396	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	1	11	0											1						18.21	18.21	3	0.04143	14022	DP690-11	48.216	48.216			0.77212	0.89697	NaN	1	0	Median	72699000	43174000	29524000	13480	2396	12571	26205	63366	63366		1	9606
STAGDTHLGGEDFDNR	0	1	Unmodified	1690.7183	0.71830543	463	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	8.31	3.6			1	2	1	2			1		3	2		1			12.824	12.824	2;3	4.7803E-24	5911	DP690-12	292.39	268.16			1.11	1.303	34.621	11	0	Median	3507499999.9999995	1506599999.9999998	2000899999.9999998	13481	463	12572	26206;26207;26208;26209;26210;26211;26212;26213;26214;26215;26216;26217;26218	63367;63368;63369;63370;63371;63372;63373;63374;63375;63376;63377;63378;63379;63380;63381;63382;63383;63384;63385;63386;63387;63388;63389;63390;63391;63392;63393;63394;63395;63396;63397;63398;63399;63400;63401;63402;63403;63404;63405;63406;63407;63408;63409	63380		43	9606
STAISLFYELSENDLNFIK	1	0	Unmodified	2203.1049	0.10486559	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	10	1									1		1						25.234	25.234	2	2.4616000000000003E-33	23159	DP690-11	271.32	248.77			0.98942	1.1884	8.4839	2	0	Median	15480000	7501700	7978600	13482	483	12573	26219;26220	63410;63411;63412;63413;63414;63415;63416;63417;63418;63419;63420	63412		11	9606
STAMDTLSSLVFQLGK	1	0	Oxidation (M)	1712.8655	0.86548694	727	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	1	0	2	0		1															22.451	22.451	2	0.0016566	16199	DP690-2	94.191	79.682			0.87242	0.85751	NaN	1	0	Median	1311700	719260	592430	13483	727	12574	26221	63421	63421	1074	1	9606
STANGPDKNEPEVEAEQPLCSSQSQCK	2	0	Unmodified	2989.3029	0.30294284	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	1	10	0										1							13.217	13.217	3	6.5351E-10	6907	DP690-10	132.39	99.683			NaN	NaN	NaN	0	0	Median	0	0	0	13484	1724	12575	26222	63422	63422		1	9606
STAPAVAYDSK	1	0	Unmodified	1108.5401	0.5400537	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	11.5	0.5											1	1					11.358	11.358	2	0.011211	3893	DP690-12	76.143	33.544			0.95985	1.159	0.76617	2	0	Median	93643000	49676000	43967000	13485	1889	12576	26223;26224	63423;63424;63425;63426	63425		4	9606
STAPETAIECTQAPAPASEDEKVVVEPPEGEEKVEK	3	0	Unmodified	3850.8306	0.83062416	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	2	10	0										1							15.302	15.302	4	5.2789E-11	9936	DP690-10	92.48	78.395			0.37817	0.40558	NaN	1	0	Median	119410000	76078000	43331000	13486	1297	12577	26225	63427;63428;63429;63430	63428		4	9606
STAPLLDVFSSMLK	1	0	Unmodified	1507.7956	0.79561646	1997	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	10	0										1							25.146	25.146	2	0.005494	23187	DP690-10	80.245	40.308			0.92335	1.1192	NaN	1	0	Median	7146400	3800400	3346000	13487	1997	12578	26226	63431;63432;63433	63432		3	9606
STASLLATQESDVMVGPFK	1	0	Oxidation (M)	1995.9823	0.98230761	2438	Q9Y2D5	AKAP2	A-kinase anchor protein 2	yes	yes	0	1	0	11	0											3						19.161	19.161	2	0.0018442	15356	DP690-11	139.46	97.039			NaN	NaN	NaN	0	0	Median	0	0	0	13488	2438	12579	26227;26228;26229	63434;63435;63436	63434	2889	3	9606
STAYEDYYYHPPPR	0	1	Unmodified	1757.7686	0.76855009	176	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	11.8	0.433											1	3					14.401	14.401	2;3	8.9857E-06	8222	DP690-12	158.47	135.69			0.51048	0.61516	NaN	1	0	Median	269110000	164540000	104570000	13489	176	12580	26230;26231;26232;26233	63437;63438;63439;63440;63441;63442;63443;63444;63445;63446	63445		10	9606
STCIYGGAPK	1	0	Unmodified	1052.4961	0.4960804	517;1793	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	9.75	3.34				1							1	2					11.773	11.773	1;2	0.00058408	4391	DP690-12	116.25	91.375			0.7428	0.79611	8.4899	4	0	Median	1763999999.9999998	992020000	771950000	13490	1793;517	12581	26234;26235;26236;26237	63447;63448;63449;63450;63451;63452;63453;63454;63455;63456;63457	63450		11	9606
STDTGVSLPSYEEDQGSK	1	0	Acetyl (Protein N-term)	1940.8487	0.84871048	2428	Q9Y241	HIGD1A	HIG1 domain family member 1A, mitochondrial	yes	yes	1	0	0	16	0																1	17.891	17.891	2	9.451E-13	12196	DP690-16	182.37	147.67			0.77978	0.91188	NaN	1	0	Median	6149900	3352500	2797400	13491	2428	12582	26238	63458;63459;63460;63461;63462;63463	63461		6	9606
STELLIR	0	1	Unmodified	830.48617	0.48616764	1036;1444	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	0	8	0								1									14.39	14.39	2	1.5494E-06	7308	DP690-8	160.17	73.236			NaN	NaN	NaN	0	0	Median	117820000	117820000	0	13492	1036;1444	12583	26239	63464;63465	63465		2	9606
STESLQANVQR	0	1	Unmodified	1231.6157	0.61567826	593	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	9.6	5.5	1						1		1						1	1	11.535	11.535	2	1.1028E-06	4156	DP690-7	223.83	175.04			0.98988	1.1419	7.4913	5	0	Median	367870000	192620000	175240000	13493	593	12584	26240;26241;26242;26243;26244	63466;63467;63468;63469;63470;63471;63472;63473;63474;63475;63476;63477;63478;63479;63480;63481;63482	63478		17	9606
STETSDFENIESPLNER	0	1	Unmodified	1966.8756	0.87559393	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	3	0			1														17.924	17.924	2	1.0152E-93	12518	DP690-3	312.31	266.95			NaN	NaN	NaN	0	0	Median	6377000	0	6377000	13494	1887	12585	26245	63483;63484	63483		2	9606
STEVLPEKTDAVNEALESLESVLR	1	1	Unmodified	2628.3494	0.34940597	765	P46939	UTRN	Utrophin	yes	yes	0	0	1	9	0									1								23.939	23.939	3	0.00041021	19355	DP690-9	91.481	75.896			0.66917	0.77611	NaN	1	0	Median	2697700	1534700	1163000	13495	765	12586	26246	63485;63486;63487	63485		3	9606
STFVLDEFKR	1	1	Unmodified	1240.6452	0.64518747	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	9.8	2.99					1				2				2				16.406	16.406	2;3	2.5975E-05	10621	DP690-13	153.05	103.63			0.93183	0.96173	43.57	5	0	Median	2025699999.9999998	1045299999.9999999	980400000	13496	598	12587	26247;26248;26249;26250;26251	63488;63489;63490;63491;63492;63493;63494;63495;63496;63497;63498;63499;63500;63501	63491		14	9606
STFVLSNLAEVVER	0	1	Unmodified	1562.8304	0.83042206	1693	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	6	0						1											21.515	21.515	2	8.3506E-07	15730	DP690-6	193.28	193.28			0.87205	1.0007	NaN	1	0	Median	12266000	6407300	5859100	13497	1693	12588	26252	63502;63503;63504;63505;63506	63505		5	9606
STGEAFVQFASK	1	0	Unmodified	1270.6194	0.61936665	638	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	10	4						1								1			16.454	16.454	2	0.00092874	10906	DP690-14	106.16	71.005			1.1809	1.3631	23.51	2	0	Median	130340000	44677000	85663000	13498	638	12589	26253;26254	63507;63508;63509	63508		3	9606
STGEAFVQFASQEIAEK	1	0	Unmodified	1840.8843	0.88430813	639;901	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	10.4	3.47					3				1			1	6				23.1	23.1	2	8.8708E-60	15857	DP690-13	361.58	318.16			0.82355	0.90798	26.24	6	0	Median	1762999999.9999998	921590000	841450000	13499	639;901	12590	26255;26256;26257;26258;26259;26260;26261;26262;26263;26264;26265	63510;63511;63512;63513;63514;63515;63516;63517;63518;63519;63520;63521;63522;63523;63524;63525;63526;63527;63528;63529;63530;63531;63532;63533;63534;63535;63536;63537;63538;63539	63513		29	9606
STGEPLGHVPAR	0	1	Unmodified	1219.6309	0.63093439	1806	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	6.33	3.3				2							1						10.846	10.846	2;3	0.0015567	3248	DP690-4	84.817	74.009			0.87459	0.95189	24.263	3	0	Plateau	72180000	33849000	38332000	13500	1806	12591	26266;26267;26268	63540;63541;63542;63543;63544;63545;63546	63546		7	9606
STGGAPTFNVTVTK	1	0	Unmodified	1378.7092	0.70924429	407	P07737	PFN1	Profilin-1	yes	yes	0	0	0	8	0								1									15.126	15.126	2	0.0004131	8228	DP690-8	108.98	80.903			1.5041	1.7329	NaN	1	0	Median	5924800	2297300	3627500	13501	407	12592	26269	63547;63548	63548		2	9606
STGLILDSGATHTTAIPVHDGYVLQQGIVK	1	0	Unmodified	3090.635	0.63496372	351	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	13	0													1				17.903	17.903	4	1.3812E-06	12727	DP690-13	118.15	118.15			0.85124	0.98236	NaN	1	0	Median	80422000	49045000	31376000	13502	351	12593	26270	63549;63550;63551	63549		3	9606
STGNFLTLTQAIDK	1	0	Unmodified	1507.7882	0.7882229	2305	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	11	0											1						19.605	19.605	2	0.00054389	16060	DP690-11	107.17	83.416			0.91859	1.1111	NaN	1	0	Median	45257000	23664000	21593000	13503	2305	12594	26271	63552	63552		1	9606
STGSFVGELMYK	1	0	Oxidation (M)	1333.6224	0.62240312	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	1	0	12	0												1					16.738	16.738	2	0.010114	11375	DP690-12	82.831	63.736			0.85182	0.97698	NaN	1	0	Median	130540000	63813000	66725000	13504	2359	12595	26272	63553;63554;63555	63553	2795	3	9606
STGSFVGELMYK	1	0	Unmodified	1317.6275	0.6274885	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	12	0												1					18.575	18.575	2	0.00029887	13917	DP690-12	148.91	117.42			0.82673	0.96485	NaN	1	0	Median	99812000	54621000	45191000	13505	2359	12595	26273	63556;63557;63558	63556		3	9606
STGTETGSNINVNSELNPSTGNR	0	1	Unmodified	2348.084	0.084023579	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10.5	0.5										1	1						14.847	14.847	2	1.7836E-63	9265	DP690-10	431.13	405.89			0.7035	0.87139	NaN	1	0	Median	112500000	69668000	42831000	13506	1377	12596	26274;26275	63559;63560;63561;63562;63563;63564;63565	63562		7	9606
STGVALSIAVGLLEGTFPNTGAR	0	1	Unmodified	2230.1957	0.19574628	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	11	0											1						25.664	25.664	2	8.4322E-10	23564	DP690-11	152.37	124.73			0.6434	0.74962	NaN	1	0	Median	1583400	957350	626070	13507	1333	12597	26276	63566;63567;63568;63569	63566		4	9606
STGVSFWTQDSDENEQEQQSDTEEGSNKK	2	0	Unmodified	3289.3767	0.37669594	126	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	1	11	0											1						15.388	15.388	3	0.0010894	9949	DP690-11	92.716	77.162			NaN	NaN	NaN	0	0	Median	0	0	0	13508	126	12598	26277	63570	63570		1	9606
STGVVNIPAAECLDEYEDDEAGQKER	1	1	Unmodified	2894.2876	0.28761035	1880	Q96IZ0	PAWR	PRKC apoptosis WT1 regulator protein	yes	yes	0	0	1	14	0														1			18.055	18.055	3	1.6745E-10	13071	DP690-14	145.72	133.23			0.92681	1.161	NaN	1	0	Median	40958000	22197000	18761000	13509	1880	12599	26278	63571;63572;63573	63572		3	9606
STHSELLEDYYQSGR	0	1	Unmodified	1783.8013	0.80130678	606	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	9	0									1								15.209	15.209	3	0.010086	8806	DP690-9	61.649	49.364			0.98628	1.2332	NaN	1	0	Median	9863900	5459500	4404400	13510	606	12600	26279	63574	63574		1	9606
STIFYYVQK	1	0	Unmodified	1147.5914	0.59136099	2393	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	13	0													1				11.101	11.101	2	0.037738	3534	DP690-13	71.296	32.274			1.0412	1.211	NaN	1	0	Median	30383000	15256000	15128000	13511	2393	12601	26280	63575	63575		1	9606
STITSREIQTAVR	0	2	Unmodified	1460.7947	0.79470526	224;399	P57053;O60814;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;Q99880;P06899;Q16778;P33778;P23527	H2BFS;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O	no	no	0	0	1	16	0																1	12.949	12.949	2	0.050075	5858	DP690-16	73.632	26.836			1.0269	1.085	NaN	1	0	Median	8893700	4220200	4673500	13512	224;399	12602	26281	63576	63576		1	9606
STITSREIQTAVRLLLPGELAK	1	2	Unmodified	2395.3799	0.37985866	224;399	P57053;O60814;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;Q99880;P06899;Q16778;P33778;P23527	H2BFS;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O	no	no	0	0	2	16	0																1	21.37	21.37	3	0.013723	16241	DP690-16	55.007	0.37064			1.0053	1.0692	NaN	1	0	Median	4216100	2000900	2215100	13513	224;399	12603	26282	63577	63577		1	9606
STLDIVLANKDR	1	1	Unmodified	1343.7409	0.74087877	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	1	3	0			2														15.412	15.412	2;3	0.0066594	9201	DP690-3	97.734	57.885			0.79259	0.87905	1.3475	2	0	Median	47074000	24324000	22750000	13514	574	12604	26283;26284	63578;63579;63580;63581	63580		4	9606
STLDTDYQMTK	1	0	Oxidation (M)	1317.5758	0.57584686	357	P00813	ADA	Adenosine deaminase	yes	yes	0	1	0	6	0						1											12.266	12.266	2	0.00015845	4786	DP690-6	148.94	114.86			0.80132	0.91122	NaN	1	0	Median	17947000	9950800	7996300	13515	357	12605	26285	63582;63583;63584;63585	63582	369	4	9606
STLDTDYQMTK	1	0	Unmodified	1301.5809	0.58093224	357	P00813	ADA	Adenosine deaminase	yes	yes	0	0	0	6	0						1											14.073	14.073	2	0.00030819	7016	DP690-6	119.68	107.47			0.75775	0.87073	NaN	1	0	Median	11324000	6233700	5089800	13516	357	12605	26286	63586;63587	63586		2	9606
STLEQKPSKPAAPQVPPK	3	0	Unmodified	1902.0575	0.057461885	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	2	11	0											1						10.57	10.57	3	0.064056	2975	DP690-11	61.524	61.524			0.46945	0.50849	NaN	1	0	Median	83905000	56256000	27650000	13517	2501	12606	26287	63588	63588		0	9606
STLIDTLFNTNFEDYESSHFCPNVK	1	0	Unmodified	2977.344	0.34400301	2296	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	13	0													1				22.523	22.523	3	0.00016514	18506	DP690-13	102.19	102.19			0.76999	0.87492	NaN	1	0	Median	8448700	4466000	3982600	13518	2296	12607	26288	63589;63590	63589		2	9606
STLINSLFLTDLYPER	0	1	Unmodified	1880.9884	0.98837927	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	14	0														1			23.346	23.346	2	1.1933E-29	19714	DP690-14	299.42	270.18			0.75483	0.90729	NaN	1	0	Median	79302000	45343000	33958000	13519	1310	12608	26289	63591;63592;63593;63594	63594		4	9606
STLINSLFLTDLYSPEYPGPSHR	0	1	Unmodified	2606.3017	0.30166791	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	13	0													2				22.054	22.054	2;3	3.5772E-24	17938	DP690-13	200.73	185.6			0.67175	0.81058	NaN	1	0	Median	79218000	46402000	32815000	13520	1351	12609	26290;26291	63595;63596;63597;63598;63599	63596		5	9606
STLINTLFK	1	0	Unmodified	1035.5964	0.59644637	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	11.5	0.5											1	1					19.318	19.318	2	0.0016554	15009	DP690-12	118.74	99.64			0.92601	1.1143	10.041	2	0	Median	93954000	46295000	47660000	13521	2344	12610	26292;26293	63600;63601;63602;63603	63602		4	9606
STLLLLLTGK	1	0	Unmodified	1057.6747	0.67469669	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	5	3.21			5						1		1						21.694	21.694	2	4.1412E-05	18816	DP690-11	186.76	186.76			0.77289	0.93715	9.8675	2	0	Median	125760000	70978000	54782000	13522	1687	12611	26294;26295;26296;26297;26298;26299;26300	63604;63605;63606;63607;63608;63609;63610;63611;63612;63613;63614;63615	63607		12	9606
STLMDTLFNTK	1	0	Oxidation (M)	1285.6224	0.62240312	2231;1248	Q9NVA2;Q14141	SEPT11;SEPT6	Septin-11;Septin-6	no	no	0	1	0	13	0													2				17.471	17.471	2	0.0021967	12254	DP690-13	103.88	64.256			1.0849	1.2561	3.9154	2	0	Median	95484000	46958000	48526000	13523	2231;1248	12612	26301;26302	63616;63617	63617	1895	2	9606
STLMDTLFNTK	1	0	Unmodified	1269.6275	0.6274885	2231;1248	Q9NVA2;Q14141	SEPT11;SEPT6	Septin-11;Septin-6	no	no	0	0	0	13	0													1				20.815	20.815	2	1.1789E-05	16498	DP690-13	203.29	151.03			0.86846	1.0046	NaN	1	0	Median	52527000	26763000	25764000	13524	2231;1248	12612	26303	63618;63619;63620;63621;63622;63623	63620		6	9606
STLNEIYFGK	1	0	Unmodified	1170.5921	0.59208927	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	10.5	4.03						1	1							1	1		17.209	17.209	2	9.163E-05	11894	DP690-14	152.47	128.24			0.91245	0.99885	6.3932	4	0	Median	1191800000	621800000	570000000	13525	769	12613	26304;26305;26306;26307	63624;63625;63626;63627;63628;63629;63630;63631;63632;63633;63634;63635	63627		12	9606
STLQTMESDIYTEVR	0	1	Oxidation (M)	1787.8247	0.82474434	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	1	0	12	0												1					16.594	16.594	2	3.8464E-07	11206	DP690-12	193.49	148.85			0.95389	1.1347	NaN	1	0	Median	35180000	19382000	15797000	13526	1131	12614	26308	63636;63637	63636	1753	2	9606
STLSNQLLGR	0	1	Unmodified	1087.5986	0.59857163	268	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	14	0														3			15.678	15.678	2	3.9061E-06	9780	DP690-14	161.68	121.41			NaN	NaN	NaN	0	0	Median	89653000	89653000	0	13527	268	12615	26309;26310;26311	63638;63639;63640;63641	63639		4	9606
STLSQTVPSK	1	0	Unmodified	1046.5608	0.56078914	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10	0										2							11.33	11.33	2	0.00069092	4059	DP690-10	113.18	74.4			0.72027	0.868	NaN	1	0	Median	207080000	114630000	92444000	13528	2190	12616	26312;26313	63642;63643;63644;63645;63646;63647	63643		6	9606
STLSQTVPSKGELSR	1	1	Unmodified	1588.842	0.84204938	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	1	10.5	0.5										1	1						12.668	12.668	2	1.8728E-06	6118	DP690-10	190.53	146.11			0.67931	0.83686	6.4195	2	0	Median	56144000	32168000	23976000	13529	2190	12617	26314;26315	63648;63649;63650;63651;63652;63653	63649		6	9606
STLTDSLVCK	1	0	Unmodified	1122.5591	0.55907458	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	6	3.56			1	1							1						15.113	15.113	2	9.064E-05	8716	DP690-3	154.12	118.5			1.0083	1.0566	19.568	3	0	Median	764920000	378590000	386330000	13530	483	12618	26316;26317;26318	63654;63655;63656;63657;63658;63659;63660;63661;63662	63660		9	9606
STLVCPECAK	1	0	Unmodified	1163.5315	0.53147962	2486	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	no	no	0	0	0	3	0			1														12.098	12.098	2	0.03762	4732	DP690-3	68.371	44.942			1.5617	1.6536	NaN	1	0	Median	9993000	3445800	6547100	13531	2486	12619	26319	63663;63664;63665;63666	63665		4	9606
STLVGHDTFTK	1	0	Unmodified	1204.6088	0.60880197	58	CON__Streptavidin			yes	yes	0	0	0	7.33	4.63	2	1	1	1	1		2	2	1			1	1	1		1	12.024	12.024	2;3	9.9014E-24	4592	DP690-16	214.71	141.83		+	NaN	NaN	NaN	0	0	Median	866100000	866100000	0	13532	58	12620	26320;26321;26322;26323;26324;26325;26326;26327;26328;26329;26330;26331;26332;26333;26334	63667;63668;63669;63670;63671;63672;63673;63674;63675;63676;63677;63678;63679;63680;63681;63682;63683;63684;63685;63686;63687;63688;63689;63690;63691;63692;63693;63694;63695;63696;63697;63698	63677		32	
STMQELNSR	0	1	Unmodified	1064.4921	0.49205765	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1																11.39	11.39	2	3.2955E-06	3298	DP690-1	164.72	111.94		+	NaN	NaN	NaN	0	0	Median	42120000	42120000	0	13533	667	12621	26335	63699;63700	63700		2	9606
STMVDPAINLFFLK	1	0	Oxidation (M)	1610.8378	0.83781563	1308	Q15007	WTAP	Pre-mRNA-splicing regulator WTAP	yes	yes	0	1	0	13	0													1				22.465	22.465	2	0.0076671	18487	DP690-13	83.045	66.515			0.7113	0.81385	NaN	1	0	Median	11163000	6217200	4945900	13534	1308	12622	26336	63701;63702;63703	63702	1997	3	9606
STNENANTPAAR	0	1	Acetyl (Protein N-term)	1286.5851	0.58510641	850	P52292	KPNA2	Importin subunit alpha-1	yes	yes	1	0	0	12	0												1					10.698	10.698	2	0.00096543	3173	DP690-12	127.76	78.05			NaN	NaN	NaN	0	0	Median	16166000	16166000	0	13535	850	12623	26337	63704	63704		1	9606
STNGDTFLGGEDFDQALLR	0	1	Unmodified	2054.9545	0.95451296	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	9	3.56				1							1	1					21.079	21.079	2	8.1742E-18	17212	DP690-12	211.75	171.74			0.78108	0.94657	68.514	3	0	Median	41811000	23373000	18438000	13536	695	12624	26338;26339;26340	63705;63706;63707;63708;63709;63710;63711;63712;63713;63714;63715;63716	63706		11	9606
STNLNCSVIADVR	0	1	Unmodified	1447.7089	0.70892672	1844	Q96EL3	MRPL53	39S ribosomal protein L53, mitochondrial	yes	yes	0	0	0	16	0																1	15.907	15.907	2	0.00012262	9751	DP690-16	187.42	138.62			0.99973	1.1529	NaN	1	0	Median	27886000	14062000	13825000	13537	1844	12625	26341	63717;63718	63718		2	9606
STNTSQTGLVGTK	1	0	Unmodified	1292.6572	0.65720872	1917	Q96R06	SPAG5	Sperm-associated antigen 5	yes	yes	0	0	0	10	0										1							10.865	10.865	2	0.0035383	3497	DP690-10	88.338	88.338			0.78508	0.95764	NaN	1	0	Median	23561000	13112000	10449000	13538	1917	12626	26342	63719	63719		1	9606
STNVIVDSGGFDELGGLLKPTVASQNQNLPVAK	2	0	Unmodified	3367.7623	0.76234908	1214	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	1	12	0												1					20.849	20.849	3	3.6994E-09	16961	DP690-12	121.96	111.19			0.62099	0.72659	NaN	1	0	Median	11044000	6695700	4348400	13539	1214	12627	26343	63720;63721;63722	63720		3	9606
STPGSGSGPAHGPDPAHGPASCS	0	0	Unmodified	2086.8763	0.87627941	2398	Q9ULX9	MAFF	Transcription factor MafF	yes	yes	0	0	0	15.5	0.5															1	1	10.44	10.44	3	0.0065357	2913	DP690-16	78.794	63.202			NaN	NaN	NaN	0	0	Median	0	0	0	13540	2398	12628	26344;26345	63723;63724;63725	63725		3	9606
STPKEETVNDPEEAGHR	1	1	Unmodified	1894.8657	0.86569795	95	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	1	12	0												2					10.302	10.302	3;4	6.5003E-07	2590	DP690-12	140.68	120.5			0.70331	0.91156	NaN	1	0	Median	47691000	34914000	12778000	13541	95	12629	26346;26347	63726;63727;63728;63729	63726		4	9606
STPPEVIVEVLEPYVR	0	1	Unmodified	1825.9826	0.98256561	1037	P78332	RBM6	RNA-binding protein 6	yes	yes	0	0	0	10	0										1							24.061	24.061	2	0.00023147	22024	DP690-10	115.37	92.281			0.59649	0.74707	NaN	1	0	Median	8744600	5695500	3049100	13542	1037	12630	26348	63730;63731;63732;63733;63734	63731		5	9606
STPVNVPISQK	1	0	Unmodified	1168.6452	0.64518747	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			1														13.14	13.14	2	0.0022908	6132	DP690-3	95.523	69.081			0.69721	0.72992	NaN	1	0	Median	53359000	32276000	21083000	13543	1739	12631	26349	63735;63736	63735		2	9606
STPVPEVVQELPLTSPVDDFR	0	1	Unmodified	2324.19	0.1899922	1361	Q16625	OCLN	Occludin	yes	yes	0	0	0	13	0													1				21.979	21.979	2	0.0039001	17921	DP690-13	114.59	71.802			NaN	NaN	NaN	0	0	Median	2410200	2410200	0	13544	1361	12632	26350	63737;63738	63738		2	9606
STPVTSAVQIPEVK	1	0	Unmodified	1454.7981	0.7980593	1889	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	11	0											1						16.596	16.596	2	0.0063821	11806	DP690-11	77.387	54.009			0.69672	0.84176	NaN	1	0	Median	55679000	31591000	24087000	13545	1889	12633	26351	63739;63740;63741	63740		3	9606
STPYECGFDPMSPAR	0	1	Oxidation (M)	1729.7076	0.70760609	361	P03897	MT-ND3	NADH-ubiquinone oxidoreductase chain 3	yes	yes	0	1	0	16	0																1	15.215	15.215	2	2.4051E-05	8761	DP690-16	132.03	98.162			0.59729	0.69214	NaN	1	0	Median	24412000	15112000	9299800	13546	361	12634	26352	63742;63743;63744;63745;63746	63743	375	5	9606
STQAATQVVLNVPETR	0	1	Unmodified	1712.9057	0.90571227	256	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	5	0					3												16.055	16.055	2	5.2554E-07	9351	DP690-5	185.2	141.7			NaN	NaN	NaN	0	0	Median	0	0	0	13547	256	12635	26353;26354;26355	63747;63748;63749	63747		3	9606
STQAPLIIRPDSGNPLDTVLK	1	1	Unmodified	2234.227	0.22704641	742	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	1	4	0				1													19.284	19.284	3	0.025453	13901	DP690-4	48.919	27.676			0.8358	0.95325	NaN	1	0	Median	13761000	6835400	6925700	13548	742	12636	26356	63750;63751	63750		2	9606
STQQDIYAGSVQPILR	0	1	Unmodified	1774.9214	0.92136233	1296	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	0	0	11.5	0.5											1	1					17.363	17.363	2	2.7521E-07	12328	DP690-12	168.98	168.98			0.81629	0.97569	NaN	1	0	Median	38522000	23304000	15218000	13549	1296	12637	26357;26358	63752;63753;63754;63755	63753		4	9606
STSGEGFQFGK	1	0	Unmodified	1143.5197	0.51965261	808;16;446	P49792;O14715;Q99666;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	0	9.5	0.5									1	1							14.264	14.264	2	0.00019308	8419	DP690-10	145.72	115.56			0.88576	1.087	10.831	2	0	Median	176730000	90834000	85892000	13550	808;16;446	12638	26359;26360	63756;63757;63758;63759;63760;63761;63762	63756		7	9606
STSHTSDFNPNSGSDQR	0	1	Unmodified	1835.767	0.76704654	1951	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	7	4			1								1						10.428	10.428	3	0.034864	2779	DP690-11	72.428	51.6			1.1749	1.3401	NaN	1	0	Median	12941000	6822200	6119200	13551	1951	12639	26361;26362	63763;63764	63763		2	9606
STSLETQDDDNIR	0	1	Unmodified	1492.6641	0.66414459	1472	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	3	0			1														12.741	12.741	2	2.974E-08	5618	DP690-3	203.02	146.39			1.0911	1.2452	NaN	1	0	Median	13189000	6795800	6393500	13552	1472	12640	26363	63765;63766;63767;63768	63767		4	9606
STSNETMQAVEDGDSK	1	0	Oxidation (M)	1713.6999	0.69993775	1378	Q2KHR3	QSER1	Glutamine and serine-rich protein 1	yes	yes	0	1	0	10	0										1							10.872	10.872	2	0.022617	3501	DP690-10	101.38	65.67			NaN	NaN	NaN	0	0	Median	0	0	0	13553	1378	12641	26364	63769	63769	2127	1	9606
STSQGFCFNILCVGETGIGK	1	0	Unmodified	2174.0136	0.013624514	2231	Q9NVA2	SEPT11	Septin-11	yes	yes	0	0	0	13	0													1				21.846	21.846	2	5.336E-05	17795	DP690-13	121.92	101.18			1.3444	1.5227	NaN	1	0	Median	7414000	3778500	3635500	13554	2231	12642	26365	63770;63771;63772;63773	63771		4	9606
STSQVAASLLASK	1	0	Unmodified	1261.6878	0.68778057	2258	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	12	0												1					15.995	15.995	2	0.0045699	10455	DP690-12	85.522	66.207			0.92275	1.1058	NaN	1	0	Median	30629000	16744000	13884000	13555	2258	12643	26366	63774;63775;63776	63775		3	9606
STSSFSCLSR	0	1	Unmodified	1130.5026	0.50262234	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1																13.387	13.387	2	0.0089192	5189	DP690-1	111.46	48.991		+	NaN	NaN	NaN	0	0	Median	2800100	2800100	0	13556	44	12644	26367	63777;63778	63777		2	9606
STSTQGLEHDLDDVNAR	0	1	Unmodified	1856.85	0.85004788	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9	0									1								15	15	3	0.00025679	8488	DP690-9	97.073	85.024			0.79561	0.99325	NaN	1	0	Median	14262000	7609000	6652600	13557	1102	12645	26368	63779;63780;63781;63782	63779		4	9606
STSVSSQAAQAASPQVPATTTPK	1	0	Unmodified	2214.1128	0.11280451	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	10	0										1							13.834	13.834	2	0.00014564	7807	DP690-10	137.73	104.5			NaN	NaN	NaN	0	0	Median	0	0	0	13558	1102	12646	26369	63783	63783		1	9606
STTSDIPHMLNQVESK	1	0	Oxidation (M)	1801.8516	0.85162779	1398	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	1	0	13	0													3				13.7	13.7	2;3	0.00018907	6875	DP690-13	107.13	73.688			0.6607	0.74292	NaN	1	0	Median	157650000	90438000	67213000	13559	1398	12647	26370;26371;26372	63784;63785;63786;63787;63788;63789	63785	2136	6	9606
STTSDIPHMLNQVESK	1	0	Unmodified	1785.8567	0.85671317	1398	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	13	0													2				16.281	16.281	3	0.00018298	10535	DP690-13	105.19	105.19			0.78552	0.9066	NaN	1	0	Median	79029000	48831000	30198000	13560	1398	12647	26373;26374	63790;63791;63792;63793	63792		4	9606
STTSQVTPAEEKDGHSPMSK	2	0	Unmodified	2115.9743	0.97426212	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	1	15	0															2		10.368	10.368	3;4	5.961E-05	2726	DP690-15	108.97	94.93			0.88342	1.0111	NaN	1	0	Median	19238000	9343700	9894600	13561	1048	12648	26375;26376	63794;63795;63796	63794		3	9606
STTSTIESFAAQEK	1	0	Unmodified	1498.7151	0.71511753	309	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	0	12	0												1					16.378	16.378	2	0.00022452	10911	DP690-12	148.28	109.13			NaN	NaN	NaN	0	0	Median	33678000	0	33678000	13562	309	12649	26377	63797;63798	63797		2	9606
STTSVSEEDVSSR	0	1	Unmodified	1382.6161	0.61613177	1880	Q96IZ0	PAWR	PRKC apoptosis WT1 regulator protein	yes	yes	0	0	0	13.5	0.5													1	1			11.251	11.251	2	2.974E-08	3699	DP690-14	203.02	137.87			0.96058	1.1608	NaN	1	0	Median	57031000	27885000	29146000	13563	1880	12650	26378;26379	63799;63800;63801	63800		3	9606
STTTGHLIYK	1	0	Unmodified	1119.5924	0.59242362	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	7.67	4.03		1								1	1						10.771	10.771	2	0.00019359	3369	DP690-10	128.38	84.034			0.98082	1.0673	2.8018	3	0	Plateau	1093700000	555970000	537690000	13564	1031;1118	12651	26380;26381;26382	63802;63803;63804;63805;63806;63807;63808;63809;63810;63811;63812;63813;63814	63803		13	9606
STTTIGLVQALGAHLYQNVFACVR	0	1	Unmodified	2618.3639	0.36389102	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	11	0											3						24.368	24.368	2;3	2.3151999999999998E-38	22096	DP690-11	226.65	180.08			NaN	NaN	NaN	0	0	Median	55226000	36247000	18979000	13565	470	12652	26383;26384;26385	63815;63816;63817;63818;63819;63820;63821	63816		7	9606
STTTSDPPNICK	1	0	Unmodified	1319.6027	0.60273031	2495	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	10	0										1							11.156	11.156	2	0.050002	3988	DP690-10	60.064	21.904			0.6925	0.84415	NaN	1	0	Median	22373000	11223000	11151000	13566	2495	12653	26386	63822	63822		1	9606
STVAALLQNLYQPTGGQLLLDGKPLPQYEHR	1	1	Unmodified	3419.8201	0.82013873	1107	Q03518	TAP1	Antigen peptide transporter 1	yes	yes	0	0	1	9	0									1								21.307	21.307	4	0.074878	16371	DP690-9	24.915	24.915			1.3899	1.612	NaN	1	0	Median	6295900	2338200	3957700	13567	1107	12654	26387	63823	63823		1	9606
STVAESVSQQILR	0	1	Unmodified	1416.7573	0.75725712	1583	Q86WX3	RPS19BP1	Active regulator of SIRT1	yes	yes	0	0	0	16	0																1	17.425	17.425	2	2.0818E-05	11648	DP690-16	214.71	171.26			0.83386	0.92723	NaN	1	0	Median	75896000	42155000	33741000	13568	1583	12655	26388	63824;63825;63826;63827	63826		4	9606
STVAQLVK	1	0	Unmodified	844.50182	0.5018177	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	13	0													1				12.702	12.702	2	0.046236	5550	DP690-13	120.49	72.573			0.81849	0.9169	NaN	1	0	Median	173730000	93153000	80576000	13569	585	12656	26389	63828	63828		0	9606
STVAVNMNDLGSQPHEDREPVDPTTK	1	1	Oxidation (M)	2852.3247	0.32466456	1281	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	1	1	9	0									1								12.922	12.922	4	0.025483	5685	DP690-9	57.692	27.557			NaN	NaN	NaN	0	0	Median	3483000	3483000	0	13570	1281	12657	26390	63829	63829	1963	1	9606
STVHEILCK	1	0	Acetyl (Protein N-term)	1127.5645	0.56449431	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	1	0	0	11.3	2.91								1	4					3		1	15.716	15.716	2	1.189E-10	8825	DP690-16	180.87	113.38			0.86112	0.8625	10.176	2	0	Median	20722000000	11067000000	9654700000	13571	404	12658	26391;26392;26393;26394;26395;26396;26397;26398;26399	63830;63831;63832;63833;63834;63835;63836;63837;63838;63839;63840;63841;63842;63843;63844;63845;63846	63836		17	9606
STVHEILCKLSLEGDHSTPPSAYGSVK	2	0	Acetyl (Protein N-term)	2953.4491	0.44913679	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	1	0	1	14	0														1			19.537	19.537	4	1.5475E-05	14920	DP690-14	106.88	82.961			0.54598	0.6079	NaN	1	0	Median	395830000	252750000	143090000	13572	404	12659	26400	63847;63848;63849;63850	63847		4	9606
STVIDQIPFLAVAR	0	1	Unmodified	1528.8613	0.86132826	150	O15297	PPM1D	Protein phosphatase 1D	yes	yes	0	0	0	12	0												1					22.185	22.185	2	0.00083746	18575	DP690-12	103.08	77.741			0.65817	0.80731	NaN	1	0	Median	3613700	2160300	1453400	13573	150	12660	26401	63851	63851		1	9606
STVLQLGIR	0	1	Unmodified	985.59203	0.59202969	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	12	0												1					16.737	16.737	2	0.00065674	11441	DP690-12	143.12	47.768			0.81468	0.95535	NaN	1	0	Median	92924000	50824000	42101000	13574	1589	12661	26402	63852;63853;63854;63855	63853		4	9606
STVLQQQYNR	0	1	Unmodified	1235.6258	0.62584901	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															12.296	12.296	2	0.010809	4535	DP690-2	113.41	46.982			NaN	NaN	NaN	0	0	Median	0	0	0	13575	2482	12662	26403	63856	63856		1	9606
STVLTPMFVETQASQGTLQTR	0	1	Oxidation (M)	2310.1526	0.15256084	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.4	0.49									3	2							18.239	18.239	2	2.4323E-37	14036	DP690-10	246.5	204.4			0.8181	1.0122	9.1235	3	0	Plateau	263070000	140230000	122840000	13576	1046	12663	26404;26405;26406;26407;26408	63857;63858;63859;63860;63861;63862;63863;63864;63865;63866;63867;63868;63869;63870;63871;63872;63873;63874;63875	63859	1637	19	9606
STVLTPMFVETQASQGTLQTR	0	1	Unmodified	2294.1576	0.15764621	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							19.505	19.505	2	1.327E-37	14169	DP690-9	255.28	255.28			0.68967	0.85482	8.162	2	0	Median	87028000	51870000	35159000	13577	1046	12663	26409;26410	63876;63877;63878;63879;63880;63881;63882;63883;63884;63885	63882		10	9606
STVNCSTTPVAER	0	1	Unmodified	1420.6616	0.66164217	1942	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	7	4			1								1						10.923	10.923	2	1.9495E-05	3485	DP690-11	180.66	145.12			0.86321	0.98394	0.76255	2	0	Median	44073000	23287000	20786000	13578	1942	12664	26411;26412	63886;63887;63888;63889;63890;63891	63886		6	9606
SVAGGEIRGDTGGEDTAAPGR	0	2	Acetyl (Protein N-term)	2013.9352	0.9351745	2130	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	1	0	1	8	0								1									13.963	13.963	2	4.5157E-05	6956	DP690-8	111.64	111.64			0.84039	0.88791	NaN	1	0	Median	3397900	1808000	1589900	13579	2130	12665	26413	63892;63893	63893		2	9606
SVAGGFVYTYK	1	0	Unmodified	1190.5972	0.59717465	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10	0										1							16.067	16.067	2	0.00040681	11055	DP690-10	116.52	94.99			0.9659	1.1864	NaN	1	0	Median	160890000	58846000	102040000	13580	1329	12666	26414	63894;63895	63895		2	9606
SVAPAAPTSCDFSPGDLVWAK	1	0	Unmodified	2175.0307	0.030654786	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	10	0										1							20.081	20.081	2	0.0006141	16785	DP690-10	141.59	141.59			0.59087	0.72621	NaN	1	0	Median	37655000	24151000	13503000	13581	858	12667	26415	63896	63896		0	9606
SVAQQASLTEQR	0	1	Unmodified	1316.6684	0.66844211	853	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	4	0				1													11.691	11.691	2	0.00020668	4450	DP690-4	121.61	85.022			4.5454	5.2999	NaN	1	0	Median	14002000	3453600	10548000	13582	853	12668	26416	63897;63898;63899	63899		3	9606
SVASDVPEELDFLVPK	1	0	Unmodified	1743.8931	0.8930819	1299	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	10	0										2							22.49	22.49	2	0.0020666	19987	DP690-10	87.363	87.363			0.62998	0.76375	NaN	1	0	Median	25908000	18870000	7038500	13583	1299	12669	26417;26418	63900;63901;63902	63900		3	9606
SVATSSIVGYILGLGDR	0	1	Unmodified	1706.9203	0.9202997	1197	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	9.5	0.5									1	1							24.468	24.468	2	4.3076E-06	20077	DP690-9	132.86	108.79			0.89001	1.0891	NaN	1	0	Median	2169500	993020	1176500	13584	1197	12670	26419;26420	63903;63904;63905;63906;63907;63908;63909	63909		7	9606
SVCLIGDKEQR	1	1	Unmodified	1303.6554	0.65543458	198	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	1	11	0											1						11.695	11.695	2	0.02787	4550	DP690-11	83.869	47.444			0.66907	0.80773	NaN	1	0	Median	15667000	8283400	7384000	13585	198	12671	26421	63910;63911	63910		2	9606
SVDETTQAMAFDGIIFQGQSLK	1	0	Oxidation (M)	2401.1471	0.14714111	592	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	1	0	7.5	4.5			1									1					20.889	20.889	2	4.8253E-23	17030	DP690-12	201.3	201.3			0.80918	0.91254	46.899	2	0	Median	10264000	6439000	3825400	13586	592	12672	26422;26423	63912;63913;63914;63915;63916	63914	782	5	9606
SVDFDSLTVR	0	1	Unmodified	1137.5666	0.5666028	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	11	0											1						17.49	17.49	2	0.00061143	12979	DP690-11	146.23	95.039			NaN	NaN	NaN	0	0	Median	79167000	0	79167000	13587	2501	12673	26424	63917	63917		1	9606
SVDPTLALSVYLR	0	1	Unmodified	1432.7926	0.79257999	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								21.539	21.539	2	0.021705	15196	DP690-2	69.979	69.979			1.04	1.1729	32.509	2	0	Median	4120000	1899100	2220900	13588	1075	12674	26425;26426	63918;63919;63920;63921;63922	63918		5	9606
SVDVILDDDLVDK	1	0	Unmodified	1444.7297	0.72970496	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	7	4			1								1						19.256	19.256	2	0.00031452	15545	DP690-11	113.67	78.897			0.91472	0.97681	15.949	2	0	Median	414700000	193630000	221070000	13589	581	12675	26427;26428	63923;63924;63925;63926;63927;63928	63924		6	9606
SVDVILDDDLVDKAKPGDR	2	1	Unmodified	2069.0641	0.064063405	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	2	8.5	3.28			1						1		2						16.623	16.623	3;4	2.2162E-10	11785	DP690-11	158.45	129.9			0.70908	0.85778	18.555	3	0	Median	504020000	282430000	221590000	13590	581	12676	26429;26430;26431;26432	63929;63930;63931;63932;63933;63934;63935;63936;63937;63938	63930		10	9606
SVDVLAGLLLR	0	1	Unmodified	1154.7023	0.70230842	2054	Q9BYK8	HELZ2	Helicase with zinc finger domain 2	yes	yes	0	0	0	9	0									1								22.41	22.41	2	0.018605	17708	DP690-9	99.802	56.556			NaN	NaN	NaN	0	0	Median	463420	0	463420	13591	2054	12677	26433	63939	63939		1	9606
SVDVTNTTFLLMAASIYLHDQNPDAALR	0	1	Oxidation (M)	3091.5284	0.52844974	107	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	1	0	6	0						2											23.911	23.911	3	4.6881E-06	18248	DP690-6	106.45	86.463			1.803	2.0055	NaN	1	0	Median	2279400	617970	1661400	13592	107	12678	26434;26435	63940;63941;63942;63943;63944;63945;63946	63946	119	7	9606
SVEDVRPHHTDANNQSACFEAPDQK	1	1	Unmodified	2851.258	0.25798197	2495	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	1	10	0										1							11.791	11.791	4	0.00026314	4826	DP690-10	75.106	68.236			1.0981	1.3851	NaN	1	0	Median	49169000	26080000	23089000	13593	2495	12679	26436	63947	63947		1	9606
SVEELLEAELLK	1	0	Unmodified	1371.7497	0.74971212	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	10	0										2							22.503	22.503	2	9.7765E-08	20054	DP690-10	202.44	202.44			0.41308	0.50682	NaN	1	0	Median	32231000	18306000	13926000	13594	1570	12680	26437;26438	63948;63949;63950	63949		3	9606
SVEEPTQPGGTGLSDSR	0	1	Unmodified	1715.7962	0.7962214	2086	Q9H0B6	KLC2	Kinesin light chain 2	yes	yes	0	0	0	4	0				1													13.062	13.062	2	1.7088E-09	6006	DP690-4	190.34	136.58			0.82801	0.95946	NaN	1	0	Median	5273600	2959800	2313700	13595	2086	12681	26439	63951;63952;63953;63954	63952		4	9606
SVELEEALPVTTAEGMAK	1	0	Oxidation (M)	1889.9292	0.92920941	1771	Q92522	H1FX	Histone H1x	yes	yes	0	1	0	15	0															1		17.645	17.645	2	5.5926E-13	12172	DP690-15	188.96	188.96			0.7474	0.88116	NaN	1	0	Median	11473000	6651800	4821600	13596	1771	12682	26440	63955;63956	63956	2334	2	9606
SVELEEALPVTTAEGMAK	1	0	Acetyl (Protein N-term);Oxidation (M)	1931.9398	0.93977409	1771	Q92522	H1FX	Histone H1x	yes	yes	1	1	0	15	0															1		21.251	21.251	2	9.2774E-05	16583	DP690-15	112.08	59.155			0.65257	0.74864	NaN	1	0	Median	3113800	1797600	1316200	13597	1771	12682	26441	63957;63958;63959	63957	2334	3	9606
SVELNPTQK	1	0	Unmodified	1014.5346	0.53457439	808;16	P49792;O14715;Q99666;A6NKT7;Q7Z3J3	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	no	no	0	0	0	10	0										1							11.779	11.779	2	0.0065795	4766	DP690-10	93.429	50.559			0.74002	0.91294	NaN	1	0	Median	97943000	52187000	45756000	13598	808;16	12683	26442	63960;63961	63961		2	9606
SVEMHHEALSEALPGDNVGFNVK	1	0	Oxidation (M)	2495.1751	0.17508719	1031;1118	P68104;Q05639	EEF1A1;EEF1A2	Elongation factor 1-alpha 1;Elongation factor 1-alpha 2	no	no	0	1	0	11	3.46					1								3				15.747	15.747	3;4	1.0986E-07	9772	DP690-13	143.72	127.22			0.88475	0.97911	6.9033	4	0	Median	755760000	394180000	361580000	13599	1031;1118	12684	26443;26444;26445;26446	63962;63963;63964;63965;63966;63967;63968;63969;63970;63971;63972	63968	1569	10	9606
SVEPQDAGPLER	0	1	Unmodified	1296.631	0.63099397	2279	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	3	0			1														13.332	13.332	2	0.00044934	6416	DP690-3	125.97	87.006			0.7087	0.79418	NaN	1	0	Median	34910000	21535000	13375000	13600	2279	12685	26447	63973;63974;63975	63975		3	9606
SVEQEENKWK	2	0	Unmodified	1275.6095	0.60953025	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	1	10	0										1							11.236	11.236	2	0.04443	4082	DP690-10	81.525	30.332			0.96496	1.24	NaN	1	0	Median	54824000	27383000	27442000	13601	1570	12686	26448	63976	63976		1	9606
SVEQTLLPLVSQITTLINHK	1	0	Unmodified	2233.2682	0.26818294	2322	Q9UBT7	CTNNAL1	Alpha-catulin	yes	yes	0	0	0	11	0											1						25.073	25.073	3	2.8284E-05	22949	DP690-11	118.72	118.72			0.7168	0.8519	NaN	1	0	Median	3428800	1632800	1796000	13602	2322	12687	26449	63977;63978;63979;63980	63977		4	9606
SVESSQSETLIVPR	0	1	Unmodified	1530.789	0.78895118	1211	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	2	0		1															15.304	15.304	2	8.2148E-05	8136	DP690-2	160.77	129.97			0.9294	0.95893	NaN	1	0	Median	4024200	2191200	1833100	13603	1211	12688	26450	63981;63982;63983;63984	63984		4	9606
SVETDSSTVEHVR	0	1	Unmodified	1444.6794	0.67940073	1849	Q96F07	CYFIP2	Cytoplasmic FMR1-interacting protein 2	yes	yes	0	0	0	3	0			1														11.213	11.213	3	0.0068815	3718	DP690-3	70.622	57.221			0.87092	0.99003	NaN	1	0	Median	11571000	6040800	5530600	13604	1849	12689	26451	63985;63986;63987;63988	63985		4	9606
SVETLKEMIK	2	0	Oxidation (M)	1192.6373	0.6373249	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	1	1	4	0				2													12.232	12.232	2;3	0.0027208	4880	DP690-4	117.53	57.089			2.7422	2.8536	146.99	2	0	Median	88073000	36608000	51465000	13605	488	12690	26452;26453	63989;63990;63991;63992;63993	63989	614	5	9606
SVEYEGDLK	1	0	Unmodified	1038.487	0.4869555	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	10	0										1							13.04	13.04	2	0.0088566	6649	DP690-10	90.709	63.579			0.80662	0.99448	NaN	1	0	Median	153070000	83748000	69327000	13606	1167	12691	26454	63994;63995	63995		2	9606
SVFFGPDFITVTK	1	0	Unmodified	1456.7602	0.76021723	2402	Q9UMS0	NFU1	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	yes	yes	0	0	0	7	0							1										21.287	21.287	2	0.001086	16106	DP690-7	102.05	76.921			0.67082	0.72833	NaN	1	0	Median	22825000	13611000	9214000	13607	2402	12692	26455	63996;63997	63997		2	9606
SVFGTPTLETANK	1	0	Unmodified	1363.6983	0.69834526	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.67	0.471									1	2							16.081	16.081	2	0.0015436	9982	DP690-9	113.44	77.934			0.74677	0.9222	NaN	1	0	Median	114690000	103750000	10939000	13608	808	12693	26456;26457;26458	63998;63999;64000;64001;64002	64002		5	9606
SVFKPIVQIAVIENSESLDCQLLAVTHAGVR	1	1	Unmodified	3392.8126	0.81261051	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	1	10	0										1							22.385	22.385	4	2.8066E-06	20157	DP690-10	89.684	70.359			NaN	NaN	NaN	0	0	Median	30741000	0	30741000	13609	272	12694	26459	64003	64003		1	9606
SVGDGETVEFDVVEGEK	1	0	Unmodified	1794.816	0.81595379	1025;507	P16989;Q9Y2T7;P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	no	no	0	0	0	13.5	0.5													1	1			17.877	17.877	2	4.011E-05	12784	DP690-14	152.99	91.648			1.019	1.14	NaN	1	0	Median	192110000	90477000	101630000	13610	507;1025	12695	26460;26461	64004;64005;64006	64006		2	9606
SVGDNSSDLSNVAVIDGNR	0	1	Unmodified	1917.9028	0.90281174	306	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	3	0			1														16.717	16.717	2	1.4384E-09	10920	DP690-3	150.05	119.88			1.2712	1.4272	NaN	1	0	Median	7913400	4116100	3797300	13611	306	12696	26462	64007;64008;64009	64007		3	9606
SVGELPSTVESLQK	1	0	Unmodified	1472.7722	0.77223848	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	12	0												1					16.506	16.506	2	3.3157E-05	11084	DP690-12	156.58	88.024			0.89301	1.0654	NaN	1	0	Median	65952000	44254000	21698000	13612	1131	12697	26463	64010;64011	64011		2	9606
SVGEVMGIGR	0	1	Oxidation (M)	1019.507	0.50697943	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	0	2	0		1															12.686	12.686	2	0.0010121	4938	DP690-2	115.49	85.419			1.3555	1.4114	NaN	1	0	Median	35848000	14875000	20972000	13613	602	12698	26464	64012;64013	64013	819	2	9606
SVGFIGAGQLAYALAR	0	1	Acetyl (Protein N-term)	1634.878	0.87804096	1831	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	1	0	0	14	0														1			25.115	25.115	2	0.00038662	21704	DP690-14	113.63	113.63			0.90811	1.1324	NaN	1	0	Median	1645500	1034100	611400	13614	1831	12699	26465	64014;64015;64016;64017	64016		4	9606
SVGGSGGGSFGDNLVTR	0	1	Unmodified	1565.7434	0.74339797	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	9.86	4.05				2							3	1				1	15.397	15.397	2	3.3138E-61	10001	DP690-11	274.8	221.05			0.82218	0.95946	6.3012	2	0	Median	378750000	330150000	48606000	13615	359	12700	26466;26467;26468;26469;26470;26471;26472	64018;64019;64020;64021;64022;64023;64024;64025;64026;64027;64028;64029;64030;64031;64032;64033;64034;64035;64036	64020		19	9606
SVGWGNIFQLPFK	1	0	Unmodified	1491.7874	0.78743503	2098	Q9H1C4	UNC93B1	Protein unc-93 homolog B1	yes	yes	0	0	0	9.5	0.5									1	1							23.403	23.403	2	0.0011207	18798	DP690-9	101.65	57.221			0.64542	0.75965	NaN	1	0	Median	3315800	851200	2464600	13616	2098	12701	26473;26474	64037;64038;64039;64040	64039		4	9606
SVHFPGQAVGTR	0	1	Unmodified	1254.6469	0.64691881	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	3.5	0.5			1	1													12.538	12.538	3	0.00062108	5217	DP690-4	96.756	71.521			0.87296	0.96675	21.84	2	0	Median	90956000	53279000	37677000	13617	1122	12702	26475;26476	64041;64042;64043	64043		3	9606
SVIEQGGIQTVDQLIK	1	0	Unmodified	1726.9465	0.94651445	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	3	0			1														19.644	19.644	2	3.2922E-24	14727	DP690-3	276.47	244.31			0.86676	0.9115	NaN	1	0	Median	44877000	23568000	21310000	13618	1739	12703	26477	64044;64045	64045		2	9606
SVILEAFSSPSEEVK	1	0	Unmodified	1620.8247	0.82466798	1576	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	3	0			1														18.753	18.753	2	0.013226	13558	DP690-3	113.77	63.833			NaN	NaN	NaN	0	0	Median	0	0	0	13619	1576	12704	26478	64046	64046		1	9606
SVITYVSSLYDAFPK	1	0	Unmodified	1688.8661	0.86613887	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9.33	0.471									2	1							23.341	23.341	2	0.0002936	18797	DP690-9	112.86	0			0.85371	1.0384	12.644	2	0	Median	7420500	2652400	4768100	13620	1102	12705	26479;26480;26481	64047;64048;64049;64050;64051;64052;64053	64053		7	9606
SVIYHALSQK	1	0	Unmodified	1144.6241	0.6240581	336	O95707	POP4	Ribonuclease P protein subunit p29	yes	yes	0	0	0	15	0															1		12.041	12.041	2	0.025968	4758	DP690-15	72.243	72.243			0.82136	0.96891	NaN	1	0	Median	19510000	10338000	9172000	13621	336	12706	26482	64054;64055	64054		2	9606
SVKEDSNLTLQEK	2	0	Unmodified	1489.7624	0.76240208	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	4.67	3.77		2								1							11.665	11.665	2;3	6.3317E-07	4698	DP690-10	173.76	92.231			1.4822	1.5387	7.0519	2	0	Median	24831000	19240000	5591100	13622	766	12707	26483;26484;26485	64056;64057;64058;64059;64060;64061;64062;64063;64064;64065;64066	64056		11	9606
SVLAETEGILQK	1	0	Unmodified	1286.7082	0.70818166	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	10	0										1							18.036	18.036	2	0.00012564	13932	DP690-10	154.01	49.588			NaN	NaN	NaN	0	0	Median	65197000	65197000	0	13623	1570	12708	26486	64067;64068	64068		2	9606
SVLAPQPSTSNSQR	0	1	Unmodified	1470.7427	0.74266969	1497	Q6PGN9	PSRC1	Proline/serine-rich coiled-coil protein 1	yes	yes	0	0	0	14	0														1			11.389	11.389	2	0.0012424	3969	DP690-14	97.452	64.412			0.61547	0.76522	NaN	1	0	Median	8522200	5065700	3456500	13624	1497	12709	26487	64069;64070;64071;64072	64069		4	9606
SVLDAAQIVGLNCLR	0	1	Unmodified	1627.8716	0.87157537	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														21.051	21.051	2	1.5532E-05	16476	DP690-3	133.42	133.42			0.7302	0.81504	NaN	1	0	Median	6611300	3808400	2802900	13625	1778	12710	26488	64073;64074	64073		2	9606
SVLDKLSANQQNILK	2	0	Unmodified	1669.9363	0.93628412	910	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	1	15	0															2		16.706	16.706	2;3	0.00045129	11048	DP690-15	85.287	62.812			1.4602	1.6666	48.024	2	0	Median	86518000	28965000	57553000	13626	910	12711	26489;26490	64075;64076;64077;64078;64079	64077		5	9606
SVLDQDDVDTSMEESLK	1	0	Oxidation (M)	1925.8412	0.84118226	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	1	0	9	0									2								15.872	15.872	2	0.039924	9733	DP690-9	84.734	46.154			NaN	NaN	NaN	0	0	Median	1625800	1625800	0	13627	1762	12712	26491;26492	64080;64081	64080	2332	2	9606
SVLEGGDIPLQGLSGLK	1	0	Unmodified	1681.9251	0.92505073	2035	Q9BX66	SORBS1	Sorbin and SH3 domain-containing protein 1	yes	yes	0	0	0	11	0											1						20.35	20.35	2	0.0013705	17109	DP690-11	89.747	75.661			0.49872	0.61245	NaN	1	0	Median	20388000	12928000	7459900	13628	2035	12713	26493	64082	64082		1	9606
SVLELIPELNEKEEAYNSLMK	2	0	Oxidation (M)	2464.2407	0.24070714	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	1	1	10	0										1							20.221	20.221	3	0.0015401	17042	DP690-10	71.969	57.355			0.82576	1.0371	NaN	1	0	Median	73986000	36428000	37558000	13629	732	12714	26494	64083	64083	1079	1	9606
SVLGGQDQLR	0	1	Unmodified	1071.5673	0.5672715	2014	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	13	0													1				13.494	13.494	2	9.4661E-05	6605	DP690-13	147.4	100.98			0.82358	0.96182	NaN	1	0	Median	151450000	79542000	71912000	13630	2014	12715	26495	64084;64085	64084		2	9606
SVLIGEFLEK	1	0	Unmodified	1133.6332	0.6332258	162	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	4	0				1													19.553	19.553	2	0.0013937	14235	DP690-4	106.18	83.397			0.88559	0.9684	NaN	1	0	Median	12111000	6166600	5944300	13631	162	12716	26496	64086;64087;64088	64088		3	9606
SVLISQSVINYVEEENIPALK	1	0	Acetyl (Protein N-term)	2386.2632	0.26315714	2387	Q9ULH0	KIDINS220	Kinase D-interacting substrate of 220 kDa	yes	yes	1	0	0	9	0									1								27.182	27.182	2	0.0028098	22615	DP690-9	95.651	69.527			NaN	NaN	NaN	0	0	Median	0	0	0	13632	2387	12717	26497	64089	64089		1	9606
SVLLELTAALTEGVVNGK	1	0	Unmodified	1813.0197	0.019679395	268	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	14	0														1			25.468	25.468	2	7.1753E-12	22139	DP690-14	177.36	155.69			0.86377	1.0176	NaN	1	0	Median	4796700	2539100	2257600	13633	268	12718	26498	64090;64091	64091		2	9606
SVLVSAGNVK	1	0	Unmodified	972.5604	0.56039521	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								12.603	12.603	2	0.0029738	5300	DP690-9	95.815	48.158			0.89223	1.0873	NaN	1	0	Median	31709000	15931000	15778000	13634	1264	12719	26499	64092;64093;64094;64095	64093		4	9606
SVMLYAAEMIPK	1	0	2 Oxidation (M)	1383.6778	0.67780951	431	P09132	SRP19	Signal recognition particle 19 kDa protein	yes	yes	0	2	0	12	4								1								1	16.232	16.232	2	0.0012968	10082	DP690-16	106.4	80.357			0.82027	0.92342	7.0388	2	0	Median	107850000	59908000	47943000	13635	431	12720	26500;26501	64096;64097;64098;64099;64100;64101;64102	64099	500;501	7	9606
SVNDQPSGNLPFLKPDDIQYFDK	2	0	Unmodified	2636.2758	0.27584709	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	10.5	0.5										1	1						20.149	20.149	3	3.6769E-05	16917	DP690-10	123.61	103.28			0.67303	0.8005	5.1996	2	0	Median	183470000	108780000	74687000	13636	263	12721	26502;26503	64103;64104;64105;64106;64107;64108	64104		6	9606
SVNELIYKR	1	1	Unmodified	1120.6241	0.6240581	525	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	15	0															2		12.859	12.859	2;3	0.00049714	5841	DP690-15	163.9	114.46			1.8848	2.1908	76.586	2	0	Median	61164000	27282000	33882000	13637	525	12722	26504;26505	64109;64110;64111;64112;64113;64114	64112		6	9606
SVNESLNNLFITEEDYQALR	0	1	Unmodified	2354.139	0.13901926	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	10.3	0.471										2	1						21.494	21.494	2	3.9875E-39	18812	DP690-10	238.88	189.6			0.62129	0.75313	NaN	1	0	Median	81414000	41950000	39465000	13638	1075	12723	26506;26507;26508	64115;64116;64117;64118;64119;64120	64115		6	9606
SVNFSLTPNEIK	1	0	Unmodified	1347.7034	0.70343063	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	10	0										1							17.409	17.409	2	0.0041673	13028	DP690-10	87.789	42.808			0.75056	0.92659	NaN	1	0	Median	120650000	73775000	46873000	13639	763	12724	26509	64121;64122;64123;64124	64122		4	9606
SVNLTEQNSNNSAVPYKR	1	1	Unmodified	2019.9974	0.99738082	323	O95425	SVIL	Supervillin	yes	yes	0	0	1	10	0										2							12.716	12.716	2;3	7.792599999999999E-21	6217	DP690-10	231.07	177.06			0.78164	0.9663	NaN	1	0	Median	100600000	52687000	47915000	13640	323	12725	26510;26511	64125;64126	64126		2	9606
SVNSAGLHTVQR	0	1	Unmodified	1267.6633	0.66329715	1727	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	10	0										1							10.471	10.471	2	0.00080483	2883	DP690-10	123.51	85.964			NaN	NaN	NaN	0	0	Median	0	0	0	13641	1727	12726	26512	64127	64127		1	9606
SVNSLDGLASVLYPGCDTLDK	1	0	Unmodified	2223.0729	0.072913532	331	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	7	4			1								1						22.162	22.162	2	0.00059791	19532	DP690-11	110.6	88.655			0.73996	0.83727	8.3121	2	0	Median	22089000	12422000	9666900	13642	331	12727	26513;26514	64128;64129;64130;64131;64132	64129		5	9606
SVNVNAASGGVQNSGIVR	0	1	Unmodified	1727.8915	0.89145919	1705	Q8NHV4	NEDD1	Protein NEDD1	yes	yes	0	0	0	11.5	0.5											1	1					14.209	14.209	2	2.3283E-06	7813	DP690-12	136.33	99.88			0.92254	1.1036	25.555	2	0	Median	62159000	31185000	30974000	13643	1705	12728	26515;26516	64133;64134;64135	64134		3	9606
SVNVSLTQEELDSGLDELSVR	0	1	Unmodified	2289.1336	0.13359953	2438	Q9Y2D5	AKAP2	A-kinase anchor protein 2	yes	yes	0	0	0	10.3	0.471										2	1						21.378	21.378	2	2.8335E-62	18441	DP690-11	399.34	347.27			1.0802	1.2892	NaN	1	0	Median	45129000	21990000	23139000	13644	2438	12729	26517;26518;26519	64136;64137;64138;64139;64140;64141	64139		6	9606
SVNYAAGLSPYADKGK	2	0	Acetyl (Protein N-term)	1681.8312	0.83115034	1664	Q8N6T7	SIRT6	NAD-dependent protein deacetylase sirtuin-6	yes	yes	1	0	1	14	0														1			16.985	16.985	2	0.0023574	11639	DP690-14	120.6	71.543			NaN	NaN	NaN	0	0	Median	0	0	0	13645	1664	12730	26520	64142	64142		1	9606
SVPADLSRPK	1	1	Unmodified	1068.5928	0.59275797	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	10	0										1							10.624	10.624	2	0.0013193	3121	DP690-10	123.21	65.35			0.7211	0.74964	NaN	1	0	Median	1308800000	764750000	544100000	13646	604	12731	26521	64143;64144;64145;64146	64143		4	9606
SVPAFIDISEEDQAAELR	0	1	Acetyl (Protein N-term)	2030.9797	0.97966507	1528	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	1	0	0	14	0														1			24.04	24.04	2	9.5132E-17	20502	DP690-14	205.87	182.69			0.85954	1.0737	NaN	1	0	Median	6828600	3730700	3097900	13647	1528	12732	26522	64147;64148;64149;64150;64151	64151		5	9606
SVPAGLTLQSVSPQSLQGK	1	0	Unmodified	1896.0316	0.031641065	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	0	10	0										4							18.278	18.278	2	1.5137E-09	14392	DP690-10	152.11	137.64			0.56522	0.69895	NaN	1	0	Median	72045000	39125000	32919000	13648	2155	12733	26523;26524;26525;26526	64152;64153;64154;64155	64152		4	9606
SVPGVCGASQTHQKPQNGEK	2	0	Unmodified	2108.0069	0.006899652	2443	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	1	12	0												2					10.199	10.199	3	0.0010122	2440	DP690-12	139.12	110.18			NaN	NaN	NaN	0	0	Median	0	0	0	13649	2443	12734	26527;26528	64156;64157	64157		2	9606
SVPHLQKVFDR	1	1	Unmodified	1324.7252	0.72516913	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	10	4						1								1			12.928	12.928	3	0.00065209	5949	DP690-14	101.3	67.534			0.80114	0.91349	2.9993	2	0	Median	142980000	74977000	68000000	13650	404	12735	26529;26530	64158;64159;64160	64158		3	9606
SVPHLQKVFDRYK	2	1	Unmodified	1615.8835	0.88346068	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	2	14	0														1			13.164	13.164	4	0.0077122	6385	DP690-14	77.74	52.009			0.70964	0.85414	NaN	1	0	Median	51209000	27494000	23715000	13651	404	12736	26531	64161	64161		1	9606
SVPLATAPMAEQR	0	1	Unmodified	1369.7024	0.70238478	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	3	0			1														14.588	14.588	2	0.010236	8081	DP690-3	104.43	46.884			NaN	NaN	NaN	0	0	Median	7919300	0	7919300	13652	2515	12737	26532	64162;64163	64163		2	9606
SVPTSTVFYPSDGVATEK	1	0	Unmodified	1883.9153	0.9152739	615	P29401	TKT	Transketolase	yes	yes	0	0	0	4	0				1													16.776	16.776	2	3.9918E-06	10836	DP690-4	130.47	104.24			1.3455	1.4457	NaN	1	0	Median	5251900	2646400	2605500	13653	615	12738	26533	64164;64165;64166	64164		3	9606
SVPTTQCLDNSK	1	0	Unmodified	1348.6293	0.62927941	749	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	9	0									1								11.951	11.951	2	0.043485	4543	DP690-9	89.827	60.16			NaN	NaN	NaN	0	0	Median	0	0	0	13654	749	12739	26534	64167	64167		1	9606
SVPVPLQEAPQQRPVVPPR	0	2	Unmodified	2093.1746	0.17455733	8	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	1	11	0											1						14.803	14.803	3	0.00092171	9199	DP690-11	78.95	64.022			0.52473	0.64685	NaN	1	0	Median	71990000	51387000	20603000	13655	8	12740	26535	64168;64169	64169		2	9606
SVQEIAEQLLLENHPAR	0	1	Unmodified	1946.0221	0.022139011	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9	0									1								20.192	20.192	3	0.00012884	15092	DP690-9	110.12	83.758			0.6386	0.79968	NaN	1	0	Median	5177800	3012800	2165000	13656	1102	12741	26536	64170;64171	64170		2	9606
SVQMFELFYSQHFSGR	0	1	Oxidation (M)	1977.9043	0.90433206	1228	Q13617	CUL2	Cullin-2	yes	yes	0	1	0	3	0			1														18.968	18.968	3	5.4352E-08	13832	DP690-3	169.3	137.7			NaN	NaN	NaN	0	0	Median	23230000	0	23230000	13657	1228	12742	26537	64172;64173	64173	1883	2	9606
SVQMFELFYSQHFSGR	0	1	Unmodified	1961.9094	0.90941744	1228	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	3	0			1														20.293	20.293	3	0.0006313	15501	DP690-3	124.16	97.338			NaN	NaN	NaN	0	0	Median	4161000	0	4161000	13658	1228	12742	26538	64174;64175	64174		2	9606
SVQQTVELLTR	0	1	Unmodified	1272.7038	0.70376498	2141	Q9H944	MED20	Mediator of RNA polymerase II transcription subunit 20	yes	yes	0	0	0	15	0															1		18.127	18.127	2	0.0022954	12804	DP690-15	95.483	95.483			1.6609	1.931	NaN	1	0	Median	26650000	9778100	16872000	13659	2141	12743	26539	64176;64177;64178;64179;64180;64181	64177		6	9606
SVQTTLQTDEVK	1	0	Unmodified	1347.6882	0.6881745	257;297	O75477;O94905	ERLIN1;ERLIN2	Erlin-1;Erlin-2	no	no	0	0	0	14	0														1			13.495	13.495	2	5.331E-05	6757	DP690-14	169.76	137.89			0.90255	1.0534	NaN	1	0	Median	197060000	104090000	92973000	13660	257;297	12744	26540	64182;64183;64184;64185;64186	64182		5	9606
SVSESHTSCPAESASDAAPLQR	0	1	Unmodified	2286.0183	0.018252199	1735	Q8WUA7	TBC1D22A	TBC1 domain family member 22A	yes	yes	0	0	0	4	0				1													12.243	12.243	3	0.0012941	4922	DP690-4	72.585	52.445			NaN	NaN	NaN	0	0	Median	0	0	0	13661	1735	12745	26541	64187	64187		1	9606
SVSGTDVQEECR	0	1	Unmodified	1365.5831	0.5830575	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	3	0			2														10.716	10.716	2	1.7358E-17	3067	DP690-3	205.59	165.71			NaN	NaN	NaN	0	0	Median	13843000	0	13843000	13662	788	12746	26542;26543	64188;64189;64190;64191	64188		4	9606
SVSIPAPAYYAHLVAFR	0	1	Unmodified	1860.9887	0.98865404	2147	Q9UKV8;Q9H9G7	AGO2;AGO3	Protein argonaute-2;Protein argonaute-3	yes	no	0	0	0	11	0											1						19.855	19.855	3	0.002294	16456	DP690-11	103.14	76.546			NaN	NaN	NaN	0	0	Median	9088700	9088700	0	13663	2147	12747	26544	64192;64193	64192		2	9606
SVSIQEEQSAPSSEK	1	0	Unmodified	1604.753	0.7529596	1588	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	12.5	3.43				1								1	3	1	1	1	11.819	11.819	2	4.1765000000000003E-20	4598	DP690-12	293.62	254.9			0.80254	0.93252	15.6	3	0	Median	69143000	37273000	31870000	13664	1588	12748	26545;26546;26547;26548;26549;26550;26551;26552	64194;64195;64196;64197;64198;64199;64200;64201;64202;64203;64204;64205;64206;64207;64208;64209;64210;64211	64199		18	9606
SVSLTGAPESVQK	1	0	Unmodified	1301.6827	0.68269519	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	7	4			1								1						13.533	13.533	2	3.3115E-08	7205	DP690-11	201.84	123.7			0.87072	0.94147	50.547	2	0	Median	299370000	148550000	150820000	13665	1798	12749	26553;26554	64212;64213;64214;64215;64216;64217;64218;64219	64213		8	9606
SVSPQTLEAYIR	0	1	Unmodified	1362.7143	0.71432967	2317	Q9UBP0	SPAST	Spastin	yes	yes	0	0	0	12	0												1					18.883	18.883	2	0.031608	14441	DP690-12	90.108	40.69			NaN	NaN	NaN	0	0	Median	13387000	13387000	0	13666	2317	12750	26555	64220	64220		1	9606
SVSSNVASVSPIPAGSK	1	0	Unmodified	1585.8312	0.83115034	2520	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	4	0				1													14.726	14.726	2	0.015369	8208	DP690-4	97.631	62.135			NaN	NaN	NaN	0	0	Median	3201700	0	3201700	13667	2520	12751	26556	64221	64221		1	9606
SVSSQSSSSVSSQVTTAGSGK	1	0	Unmodified	1956.9236	0.92360676	2258	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	12	0												1					12.117	12.117	2	3.4458E-62	4977	DP690-12	328.59	261.21			0.88488	1.0564	NaN	1	0	Median	36505000	18940000	17566000	13668	2258	12752	26557	64222;64223;64224;64225;64226;64227;64228	64226		7	9606
SVSTPSEAGSQDSGDGAVGSR	0	1	Unmodified	1949.8563	0.85625547	1203	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	7.5	3.5				1							1						11.672	11.672	2	6.6456E-16	4644	DP690-11	178.22	159.41			0.70602	0.84011	24.908	2	0	Median	19168000	9564500	9603800	13669	1203	12753	26558;26559	64229;64230;64231;64232;64233;64234;64235	64231		7	9606
SVSTSTTFVQGR	0	1	Unmodified	1268.6361	0.63607935	584	P25686	DNAJB2	DnaJ homolog subfamily B member 2	yes	yes	0	0	0	6	0						1											13.082	13.082	2	0.00055472	5728	DP690-6	110.14	85.914			1.699	1.9479	NaN	1	0	Median	7181000	2930000	4251000	13670	584	12754	26560	64236;64237;64238;64239	64239		4	9606
SVTEQGAELSNEER	0	1	Unmodified	1547.7063	0.70634376	1014	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	9.67	3.77							2								1		12.675	12.675	2	6.3119E-17	5343	DP690-7	279.9	207.8			1.0289	1.1355	13.146	2	0	Median	160590000	74034000	86555000	13671	1014	12755	26561;26562;26563	64240;64241;64242;64243;64244;64245;64246;64247;64248;64249;64250;64251	64249		12	9606
SVTLGYLFSQGHLTR	0	1	Unmodified	1677.8839	0.88385462	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	10.8	1.13									1	3	3	1	1				18.679	18.679	2;3	2.8443E-10	14660	DP690-11	205.62	163.1			0.85346	0.97821	9.642	4	0	Median	584510000	311170000	273350000	13672	897	12756	26564;26565;26566;26567;26568;26569;26570;26571;26572	64252;64253;64254;64255;64256;64257;64258;64259;64260;64261;64262;64263;64264;64265;64266;64267	64258		15	9606
SVTTVQWENSFVSVYSK	1	0	Unmodified	1959.9578	0.95780742	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							20.201	20.201	2	0.020961	16963	DP690-10	92.781	56.334			NaN	NaN	NaN	0	0	Median	24666000	0	24666000	13673	1492	12757	26573	64268	64268		1	9606
SVVANFIVK	1	0	Unmodified	975.57532	0.57531699	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10	0										1							16.806	16.806	2	0.07786	12133	DP690-10	58.782	34.752			0.5574	0.68807	NaN	1	0	Median	117820000	68022000	49795000	13674	1377	12758	26574	64269	64269		1	9606
SVVAPPGAPK	1	0	Unmodified	921.52837	0.5283668	497	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	3	0			1														11.671	11.671	2	0.017034	4300	DP690-3	75.213	48.251			0.63345	0.67396	NaN	1	0	Median	12037000	7489800	4547300	13675	497	12759	26575	64270	64270		1	9606
SVVCQESDLPDELLYGR	0	1	Unmodified	1978.9306	0.93060639	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	0	9	4					1								1				20.209	20.209	2	1.5837E-22	15725	DP690-13	239.48	181.91			0.83866	0.94117	27.401	2	0	Median	235220000	132180000	103040000	13676	2208	12760	26576;26577	64271;64272;64273;64274;64275;64276;64277	64272		7	9606
SVVGLDVGSQSCYIAVAR	0	1	Acetyl (Protein N-term)	1921.9568	0.95676156	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	1	0	0	3	0			1														21.707	21.707	2	0.0023082	17274	DP690-3	102.87	66.025			NaN	NaN	NaN	0	0	Median	843950	843950	0	13677	1778	12761	26578	64278;64279	64279		2	9606
SVVIDCSSSQPQFCNAGSNR	0	1	Unmodified	2211.9637	0.96371421	2154	Q9HAS0	C17orf75	Protein Njmu-R1	yes	yes	0	0	0	13	0													1				14.911	14.911	2	5.308E-32	8612	DP690-13	258.6	252.12			0.71548	0.87414	NaN	1	0	Median	11912000	6463600	5447900	13678	2154	12762	26579	64280;64281;64282	64280		3	9606
SVVSLKNEEENENSISQYK	2	0	Unmodified	2196.0546	0.054620931	1052	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	1	14	0														1			14.557	14.557	3	3.0179E-30	8266	DP690-14	237.73	216.46			0.94294	1.0546	NaN	1	0	Median	95656000	51942000	43714000	13679	1052	12763	26580	64283;64284;64285	64284		3	9606
SVVSYWNLALIFHR	0	1	Unmodified	1703.9148	0.91476081	808;16;446	P49792;O14715;Q99666;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	0	9	0									1								22.126	22.126	3	0.034852	17430	DP690-9	51.875	36.72			0.29739	0.36492	NaN	1	0	Median	2262100	1551800	710290	13680	808;16;446	12764	26581	64286	64286		1	9606
SVVTGDVHGTPATK	1	0	Unmodified	1367.7045	0.70449327	337	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	9	0									1								10.468	10.468	3	0.026673	2772	DP690-9	75.102	37.922			NaN	NaN	NaN	0	0	Median	4516900	0	4516900	13681	337	12765	26582	64287	64287		1	9606
SVVTGGVQSVMGSR	0	1	Oxidation (M)	1378.6875	0.68746299	213	O60664	PLIN3	Perilipin-3	yes	yes	0	1	0	5	0					1												12.919	12.919	2	0.0017115	5536	DP690-5	100.38	65.603			0.97313	1.0208	NaN	1	0	Median	15947000	8351500	7595300	13682	213	12766	26583	64288;64289;64290;64291	64291	219	4	9606
SVWNFLK	1	0	Unmodified	892.48069	0.48068833	909	P56589	PEX3	Peroxisomal biogenesis factor 3	yes	yes	0	0	0	14	0														1			19.414	19.414	2	0.060486	14836	DP690-14	103.29	41.289			NaN	NaN	NaN	0	0	Median	11552000	11552000	0	13683	909	12767	26584	64292	64292		1	9606
SVYHLEDIVR	0	1	Unmodified	1229.6404	0.64043645	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	6	4		1								1							15.855	15.855	3	0.018585	10755	DP690-10	82.831	40.62			0.93182	0.97583	NaN	1	0	Median	21170000	3050900	18119000	13684	1282	12768	26585;26586	64293;64294;64295	64293		3	9606
SWDSSSPVDRPEPEAASPTTR	0	2	Unmodified	2271.0404	0.04036785	1582	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	1	12	0												1					13.857	13.857	3	1.228E-06	7412	DP690-12	131.31	109.2			0.51735	0.5866	NaN	1	0	Median	40115000	22220000	17895000	13685	1582	12769	26587	64296;64297;64298	64297		3	9606
SWDVDPGVCNLDEQLK	1	0	Unmodified	1873.8516	0.85162779	1457	Q66K74	MAP1S	Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain	yes	yes	0	0	0	11	0											1						19.148	19.148	2	0.0041122	15467	DP690-11	76.24	54.569			1.0511	1.2826	NaN	1	0	Median	26960000	12628000	14332000	13686	1457	12770	26588	64299	64299		1	9606
SWEEQMIEVGR	0	1	Oxidation (M)	1378.6187	0.61871473	1069	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	1	0	15	0															1		15.6	15.6	2	0.00016388	9555	DP690-15	131.62	82.258			0.89465	1.034	NaN	1	0	Median	31091000	16517000	14574000	13687	1069	12771	26589	64300;64301;64302;64303	64301	1666	4	9606
SWEEQMIEVGRK	1	1	Oxidation (M)	1506.7137	0.71367774	1069	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	1	1	15	0															1		13.574	13.574	2	0.010241	6843	DP690-15	95.775	30.497			NaN	NaN	NaN	0	0	Median	0	0	0	13688	1069	12772	26590	64304	64304	1666	1	9606
SWHDIEKDNAR	1	1	Unmodified	1369.6375	0.63747633	1333	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	1	7	4			1								1						10.799	10.799	3	0.00010908	3131	DP690-3	120.86	105.48			0.94461	1.0533	0.8978	2	0	Median	207010000	106550000	100460000	13689	1333	12773	26591;26592	64305;64306;64307;64308;64309;64310;64311	64308		7	9606
SWLSYSYQSR	0	1	Unmodified	1275.5884	0.58840088	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10	0										1							17.191	17.191	2	0.0025519	12758	DP690-10	98.582	66.948			0.97581	1.2089	NaN	1	0	Median	102640000	58814000	43829000	13690	1329	12774	26593	64312;64313	64313		2	9606
SWMGYELPFDR	0	1	Unmodified	1399.6231	0.62307182	879	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	14	0														1			21.225	21.225	2	0.019979	17110	DP690-14	72.643	54.779			0.64082	0.79489	NaN	1	0	Median	9522700	5510900	4011800	13691	879	12775	26594	64314;64315;64316	64314		3	9606
SWSLATFR	0	1	Unmodified	966.49232	0.49231565	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								18.357	18.357	2	0.042637	12755	DP690-9	123.69	77.674			0.84086	0.97727	NaN	1	0	Median	62951000	33752000	29199000	13692	1319	12776	26595	64317	64317		0	9606
SWSNIPFITVPLSR	0	1	Unmodified	1615.8722	0.8722273	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						22.528	22.528	2	0.0072587	19920	DP690-11	117.86	66.132			NaN	NaN	NaN	0	0	Median	0	0	0	13693	891	12777	26596	64318	64318		1	9606
SWTAADTAAQISK	1	0	Unmodified	1348.6623	0.6622941	514	P17693	HLA-G	HLA class I histocompatibility antigen, alpha chain G	yes	yes	0	0	0	7	0							1										13.289	13.289	2	0.0010847	6241	DP690-7	102.06	43.815			0.35929	0.38708	NaN	1	0	Median	41123000	31128000	9994100	13694	514	12778	26597	64319;64320	64320		2	9606
SWVNQMESQTGEASK	1	0	Oxidation (M)	1696.7363	0.73626368	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	1	0	6	4		1								1							12.626	12.626	2	8.1265E-05	4859	DP690-2	125.36	100.34			1.2814	1.2668	NaN	1	0	Median	2829400	1319100	1510300	13695	766	12779	26598;26599	64321;64322;64323	64323	1142	3	9606
SWWDAVCTLIHR	0	1	Unmodified	1542.7402	0.74016727	808;16;446	P49792;O14715;Q99666;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	0	9.5	0.5									1	1							22.538	22.538	3	0.0029451	17872	DP690-9	76.326	67.681			0.89483	1.0732	NaN	1	0	Median	4546400	3658900	887460	13696	808;16;446	12780	26600;26601	64324;64325;64326;64327;64328;64329	64328		6	9606
SYCAEIAHNVSSK	1	0	Unmodified	1464.6667	0.66672755	1005	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	13.3	3.77								1								2	12.622	12.622	2;3	3.2778E-05	5435	DP690-16	205.12	176.16			0.99447	1.0818	7.4344	3	0	Plateau	213910000	107350000	106560000	13697	1005	12781	26602;26603;26604	64330;64331;64332;64333;64334;64335;64336;64337;64338;64339;64340;64341	64335		12	9606
SYDYHQNWGR	0	1	Acetyl (Protein N-term)	1366.5691	0.56906242	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	1	0	0	11	0											1						15.212	15.212	2	0.047446	9708	DP690-11	70.1	54.471			0.75072	0.90189	NaN	1	0	Median	67178000	36729000	30449000	13698	2105	12782	26605	64342	64342		1	9606
SYEAQDPEIASLSGK	1	0	Unmodified	1593.7522	0.75223132	1947	Q99622	C12orf57	Protein C10	yes	yes	0	0	0	16	0																1	15.821	15.821	2	1.3078E-05	9632	DP690-16	131.17	131.17			0.60904	0.71342	NaN	1	0	Median	10084000	5162000	4922400	13699	1947	12783	26606	64343;64344;64345;64346	64343		4	9606
SYEDDDDMDLQPNK	1	0	Oxidation (M)	1699.6519	0.65192493	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	1	0	4	0				1													13.044	13.044	2	8.4439E-05	5907	DP690-4	147.28	144.96			0.90569	0.98179	NaN	1	0	Median	8910200	4947900	3962300	13700	2000	12784	26607	64347;64348;64349	64348	2538	3	9606
SYEFFNELYHR	0	1	Unmodified	1503.6783	0.67827852	241	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	10	0										1							18.346	18.346	2	0.030308	14468	DP690-10	92.051	60.18			NaN	NaN	NaN	0	0	Median	11963000	11963000	0	13701	241	12785	26608	64350	64350		1	9606
SYELPDGQVITIGNER	0	1	Unmodified	1789.8846	0.88464248	926;1023;1029;1408	P60709;Q6S8J3;A5A3E0;Q9BYX7;P63261;P68032;P68133;P63267;P62736;Q562R1	ACTB;POTEE;POTEF;POTEKP;ACTG1;ACTC1;ACTA1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	0	13.6	2.52			1	1		1	1		3	2	2	4	1	32	26	6	24.911	24.911	2;3	2.517E-22	14608	DP690-14	255.54	228.79			0.77056	0.90736	12.538	33	0	Median	47975000000	26849000000	21126000000	13702	926;1023;1029;1408	12786	26609;26610;26611;26612;26613;26614;26615;26616;26617;26618;26619;26620;26621;26622;26623;26624;26625;26626;26627;26628;26629;26630;26631;26632;26633;26634;26635;26636;26637;26638;26639;26640;26641;26642;26643;26644;26645;26646;26647;26648;26649;26650;26651;26652;26653;26654;26655;26656;26657;26658;26659;26660;26661;26662;26663;26664;26665;26666;26667;26668;26669;26670;26671;26672;26673;26674;26675;26676;26677;26678;26679;26680;26681;26682;26683;26684;26685;26686;26687;26688	64351;64352;64353;64354;64355;64356;64357;64358;64359;64360;64361;64362;64363;64364;64365;64366;64367;64368;64369;64370;64371;64372;64373;64374;64375;64376;64377;64378;64379;64380;64381;64382;64383;64384;64385;64386;64387;64388;64389;64390;64391;64392;64393;64394;64395;64396;64397;64398;64399;64400;64401;64402;64403;64404;64405;64406;64407;64408;64409;64410;64411;64412;64413;64414;64415;64416;64417;64418;64419;64420;64421;64422;64423;64424;64425;64426;64427;64428;64429;64430;64431;64432;64433;64434;64435;64436;64437;64438;64439;64440;64441;64442;64443;64444;64445;64446;64447;64448;64449;64450;64451;64452;64453;64454;64455;64456;64457;64458;64459;64460;64461;64462;64463;64464;64465;64466;64467;64468;64469;64470;64471;64472;64473;64474;64475;64476;64477;64478;64479;64480;64481;64482;64483;64484;64485;64486;64487;64488;64489;64490;64491;64492;64493;64494;64495;64496;64497;64498;64499;64500;64501;64502;64503;64504;64505;64506;64507;64508;64509;64510;64511;64512;64513;64514;64515;64516;64517;64518;64519;64520;64521;64522;64523;64524;64525;64526;64527;64528;64529;64530;64531;64532	64371		181	9606
SYELQESNVR	0	1	Unmodified	1223.5782	0.57823012	2231	Q9NVA2	SEPT11	Septin-11	yes	yes	0	0	0	13	0													1				13.118	13.118	2	7.9787E-05	6082	DP690-13	190.73	135.62			0.88618	1.0451	NaN	1	0	Median	125610000	66694000	58915000	13703	2231	12787	26689	64533;64534	64534		2	9606
SYENELDPLK	1	0	Unmodified	1206.5768	0.57683314	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	10	0										1							16.671	16.671	2	0.013859	12014	DP690-10	78.264	42.819			0.77303	0.95474	NaN	1	0	Median	58358000	33757000	24601000	13704	1794	12788	26690	64535	64535		1	9606
SYESSEDCSEAAGSPAR	0	1	Unmodified	1801.7061	0.70608576	1495	Q6P6C2	ALKBH5	RNA demethylase ALKBH5	yes	yes	0	0	0	13	0													2				11.267	11.267	2	2.0238E-17	3730	DP690-13	224.25	212.31			NaN	NaN	NaN	0	0	Median	0	0	0	13705	1495	12789	26691;26692	64536;64537	64536		2	9606
SYFSQYGEVVDCVIMK	1	0	Oxidation (M)	1939.8696	0.86958604	1845	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	1	0	13	0													1				20.758	20.758	2	8.8231E-09	16347	DP690-13	188.48	168.05			0.9641	1.121	NaN	1	0	Median	30945000	15454000	15491000	13706	1845	12790	26693	64538;64539;64540;64541	64540	2415	4	9606
SYGPAPGAGHVQEESNLSLQALESR	0	1	Unmodified	2596.2518	0.25175761	1187	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	14	0														1			17.011	17.011	3	7.8554E-07	11704	DP690-14	133.48	133.48			0.73795	0.87992	NaN	1	0	Median	108770000	64675000	44094000	13707	1187	12791	26694	64542;64543;64544;64545	64543		4	9606
SYGRPPPDVEGMTSLK	1	1	Acetyl (Protein N-term);Oxidation (M)	1790.8509	0.85089951	1081	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	yes	yes	1	1	1	13.3	3.09									1						1	1	14.772	14.772	2	0.00099808	8446	DP690-15	92.151	60.512			0.59194	0.69489	30.898	2	0	Median	21894000	14009000	7885100	13708	1081	12792	26695;26696;26697	64546;64547;64548;64549;64550;64551;64552;64553	64547	1703	8	9606
SYIEYQLTPTNTNR	0	1	Unmodified	1698.8213	0.82131394	2507	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	11	0											1						16.316	16.316	2	0.0050021	11307	DP690-11	124.42	46.779			NaN	NaN	NaN	0	0	Median	0	0	0	13709	2507	12793	26698	64554	64554		1	9606
SYISFDILR	0	1	Unmodified	1112.5866	0.58660996	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	7	4			1								1						20.433	20.433	2	0.00045059	15643	DP690-3	153.04	121.1			0.90101	1.0401	9.1643	2	0	Median	68785000	38832000	29952000	13710	797	12794	26699;26700	64555;64556;64557;64558;64559;64560;64561;64562	64562		8	9606
SYLMTNYESAPPSPQYK	1	0	Unmodified	1974.9033	0.90332901	244	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	7	0							1										16.549	16.549	2	0.050754	10259	DP690-7	90.793	62.683			NaN	NaN	NaN	0	0	Median	0	0	0	13711	244	12795	26701	64563	64563		1	9606
SYLYQILQGIVFCHSR	0	1	Unmodified	1983.0037	0.003652175	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	14	0														1			23.397	23.397	3	4.4516E-07	19782	DP690-14	143.05	143.05			0.99287	1.2135	NaN	1	0	Median	16888000	9087700	7800700	13712	391	12796	26702	64564;64565;64566;64567	64565		4	9606
SYMEEFPFPYYIILR	0	1	Oxidation (M)	1982.9488	0.94882264	2217	Q9NU22	MDN1	Midasin	yes	yes	0	1	0	9	0									1								23.96	23.96	2	0.023235	19465	DP690-9	89.171	66.079			NaN	NaN	NaN	0	0	Median	1260500	1260500	0	13713	2217	12797	26703	64568	64568	2700	1	9606
SYNDELQFLEK	1	0	Unmodified	1384.6511	0.65106071	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	12.5	0.5												1	1				18.735	18.735	2	7.6932E-05	14151	DP690-12	166.07	70.57			0.87633	0.98463	14.986	2	0	Median	329330000	144500000	184840000	13714	2475	12798	26704;26705	64569;64570;64571;64572;64573;64574;64575;64576;64577;64578	64571		10	9606
SYNKDLESAEER	1	1	Unmodified	1439.6529	0.65285163	168	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	1	4	0				1													11.538	11.538	3	0.010243	4137	DP690-4	69.352	44.158			1.8175	2.0729	NaN	1	0	Median	2386000	1188500	1197500	13715	168	12799	26706	64579	64579		1	9606
SYNQEHSQSFTFDDAQQEDR	0	1	Unmodified	2430.9949	0.99487422	2184	Q9NPQ8	RIC8A	Synembryn-A	yes	yes	0	0	0	4	0				1													14.195	14.195	3	4.3974E-05	7484	DP690-4	113.73	113.73			1.366	1.5899	NaN	1	0	Median	9500800	4282300	5218500	13716	2184	12800	26707	64580;64581	64580		2	9606
SYPGLLIVPQSVQDNALQR	0	1	Unmodified	2097.1219	0.12185306	312	O95248	SBF1	Myotubularin-related protein 5	yes	yes	0	0	0	10	0										1							20.304	20.304	2	0.031887	17122	DP690-10	97.273	40.005			NaN	NaN	NaN	0	0	Median	0	0	0	13717	312	12801	26708	64582	64582		1	9606
SYQALALWK	1	0	Unmodified	1078.5811	0.58113065	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10	0										1							18.333	18.333	2	0.019758	14337	DP690-10	79.713	44.357			0.84056	1.016	NaN	1	0	Median	199120000	115860000	83258000	13718	272	12802	26709	64583;64584;64585;64586;64587	64585		5	9606
SYQFGIIGNDR	0	1	Unmodified	1268.6149	0.61494998	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10.5	0.5										1	1						17.235	17.235	2	0.010947	12678	DP690-11	87.913	59.705			1.0033	1.223	11.696	2	0	Median	189730000	105090000	84634000	13719	2065	12803	26710;26711	64588;64589;64590	64590		3	9606
SYSEDDIHR	0	1	Unmodified	1120.4785	0.47851608	2053;2497	Q9BYJ9;Q7Z739;Q9Y5A9	YTHDF1;YTHDF3;YTHDF2	YTH domain-containing family protein 1;YTH domain-containing family protein 3;YTH domain-containing family protein 2	no	no	0	0	0	12	0												1					10.659	10.659	2	5.3051E-05	3061	DP690-12	176.09	151.16			0.97689	1.07	NaN	1	0	Median	360360000	184590000	175770000	13720	2053;2497	12804	26712	64591;64592;64593	64592		3	9606
SYSKLLCGLLAERLR	1	2	Unmodified	1777.9873	0.98727383	487	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	2	8	0								1									18.583	18.583	3	0.047002	12035	DP690-8	51.939	39.214			0.59555	0.68236	NaN	1	0	Median	3085900	1812500	1273300	13721	487	12805	26713	64594;64595	64594		2	9606
SYSMIVNNLLKPISVEGSSK	2	0	Oxidation (M)	2181.1351	0.13511986	2159	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	1	1	11	4							1								1		19.927	19.927	3	4.1905E-12	14454	DP690-7	163.11	131.69			0.86685	0.95553	0.43573	2	0	Median	36836000	19467000	17370000	13722	2159	12806	26714;26715	64596;64597;64598;64599	64598	2646	4	9606
SYSPSDLVELVAR	0	1	Unmodified	1434.7355	0.73545904	2150	Q9H9T3	ELP3	Elongator complex protein 3	yes	yes	0	0	0	4	0				1													21.158	21.158	2	0.00098451	15943	DP690-4	103.22	82.35			1.3566	1.5667	NaN	1	0	Median	2856300	1202400	1653900	13723	2150	12807	26716	64600;64601;64602	64600		3	9606
SYSPYDMLESIR	0	1	Unmodified	1459.6653	0.66533057	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	13.2	2.38						1	1		1	1				19	1	1	24.485	24.485	2	3.2902E-08	16548	DP690-14	209.73	168.95			0.71529	0.88408	10.927	18	0	Median	4968200000	2773500000	2194700000	13724	404	12808	26717;26718;26719;26720;26721;26722;26723;26724;26725;26726;26727;26728;26729;26730;26731;26732;26733;26734;26735;26736;26737;26738;26739;26740;26741	64603;64604;64605;64606;64607;64608;64609;64610;64611;64612;64613;64614;64615;64616;64617;64618;64619;64620;64621;64622;64623;64624;64625;64626;64627;64628;64629;64630;64631;64632;64633;64634;64635;64636;64637;64638;64639;64640;64641;64642;64643;64644;64645;64646;64647;64648;64649;64650;64651;64652;64653;64654;64655;64656;64657;64658;64659;64660;64661;64662;64663;64664;64665;64666;64667;64668;64669;64670;64671;64672	64605		70	9606
SYSPYDMLESIR	0	1	Oxidation (M)	1475.6602	0.66024519	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	1	0	12.3	3.59						1			1					2	1	1	18.247	18.247	2	9.0411E-05	12543	DP690-14	140.17	109.48			0.77188	0.87048	32.505	6	0	Median	4512500000	2531300000	1981199999.9999998	13725	404	12808	26742;26743;26744;26745;26746;26747	64673;64674;64675;64676;64677;64678;64679;64680;64681;64682;64683;64684;64685;64686;64687;64688;64689;64690;64691;64692;64693;64694;64695	64675	438	23	9606
SYSPYDMLESIRK	1	1	Oxidation (M)	1603.7552	0.75520821	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	1	1	12.1	3.87						2	1	1	2					3	2	4	15.954	15.954	2;3	0.0001546	9694	DP690-15	107.39	86.802			0.7738	0.85379	9.5749	12	0	Median	8338199999.999999	4529300000	3808899999.9999995	13726	404	12809	26748;26749;26750;26751;26752;26753;26754;26755;26756;26757;26758;26759;26760;26761;26762	64696;64697;64698;64699;64700;64701;64702;64703;64704;64705;64706;64707;64708;64709;64710;64711;64712;64713;64714;64715;64716;64717;64718;64719;64720;64721;64722;64723;64724;64725;64726;64727;64728;64729;64730;64731;64732;64733;64734;64735;64736;64737;64738;64739;64740;64741;64742;64743	64707	438	48	9606
SYSPYDMLESIRK	1	1	Unmodified	1587.7603	0.76029359	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	13.1	2.46						1			1					10	1		21.948	21.948	2;3	8.2744E-06	13603	DP690-14	128.57	111.31			0.79768	0.92431	45.91	11	0	Median	7873999999.999999	4424100000	3449899999.9999995	13727	404	12809	26763;26764;26765;26766;26767;26768;26769;26770;26771;26772;26773;26774;26775	64744;64745;64746;64747;64748;64749;64750;64751;64752;64753;64754;64755;64756;64757;64758;64759;64760;64761;64762;64763;64764;64765;64766;64767;64768	64745		25	9606
SYSSGGEDGYVR	0	1	Unmodified	1275.5368	0.53675924	1199	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	10	4						1								1			12.03	12.03	2	7.3839E-05	4776	DP690-14	156.83	143.45			0.897	1.0542	10.122	2	0	Median	69143000	36500000	32643000	13728	1199	12810	26776;26777	64769;64770;64771;64772;64773	64770		5	9606
SYSTTYEER	0	1	Unmodified	1134.4829	0.48293275	1349	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	12	0												1					11.301	11.301	2	0.0066504	3892	DP690-12	93.143	29.837			0.90759	1.0853	NaN	1	0	Median	28384000	15154000	13230000	13729	1349	12811	26778	64774;64775	64775		2	9606
SYSYVCGISSK	1	0	Unmodified	1249.5649	0.56488824	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	4	0				1													14.371	14.371	2	0.0057135	7678	DP690-4	116.52	90.412			NaN	NaN	NaN	0	0	Median	12216000	0	12216000	13730	813	12812	26779	64776;64777	64776		2	9606
SYTAADATLK	1	0	Unmodified	1039.5186	0.51858998	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			2														12.681	12.681	2	0.051799	5525	DP690-3	88.177	40.328			NaN	NaN	NaN	0	0	Median	0	0	0	13731	5	12813	26780;26781	64778;64779	64778		2	9606
SYTVGVMMMHR	0	1	3 Oxidation (M)	1358.5781	0.57811224	819	P50454	SERPINH1	Serpin H1	yes	yes	0	3	0	10.3	3.77					1								2				11.192	11.192	2	0.014168	2994	DP690-5	80.219	60.956			0.95801	1.1604	10.65	3	0	Plateau	92520000	45053000	47467000	13732	819	12814	26782;26783;26784	64780;64781;64782;64783;64784;64785	64784	1231;1232;1233	5	9606
SYTVGVMMMHR	0	1	2 Oxidation (M)	1342.5832	0.58319762	819	P50454	SERPINH1	Serpin H1	yes	yes	0	2	0	9	4					1								1				12.379	12.379	2	0.00078648	5105	DP690-13	111.95	91.66			0.83838	0.94052	21.654	2	0	Median	128340000	67229000	61114000	13733	819	12814	26785;26786	64786;64787;64788;64789;64790;64791	64788	1231;1232;1233	6	9606
SYTVGVMMMHR	0	1	Oxidation (M)	1326.5883	0.588283	819	P50454	SERPINH1	Serpin H1	yes	yes	0	1	0	7.67	3.77					2								1				14.036	14.036	2	0.0049932	7388	DP690-13	92.062	75.485			0.90601	1.1001	NaN	1	0	Median	52556000	27876000	24680000	13734	819	12814	26787;26788;26789	64792;64793;64794;64795;64796;64797	64795	1231;1232;1233	6	9606
SYTVGVMMMHR	0	1	Unmodified	1310.5934	0.59336837	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	5	0					1												15.361	15.361	2	0.032414	8514	DP690-5	90.657	65.881			NaN	NaN	NaN	0	0	Median	6751900	6751900	0	13735	819	12814	26790	64798	64798		1	9606
SYVAWDREK	1	1	Unmodified	1152.5564	0.55637247	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								12.541	12.541	2	0.02708	5211	DP690-9	122.52	69.35			NaN	NaN	NaN	0	0	Median	12842000	0	12842000	13736	1046	12815	26791	64799	64799		1	9606
SYVDPSTDER	0	1	Unmodified	1167.5044	0.50439648	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8	3.54		1							1	1	1						12.046	12.046	2	8.7863E-05	5061	DP690-11	158.76	127.53			0.76721	0.87919	2.4238	4	0	Median	598360000	335890000	262470000	13737	1319	12816	26792;26793;26794;26795	64800;64801;64802;64803;64804;64805;64806;64807;64808;64809;64810;64811;64812;64813;64814;64815;64816;64817	64807		18	9606
SYVSEKDVTSAK	2	0	Unmodified	1312.6511	0.65106071	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	10.5	0.5										1	1						11.115	11.115	2	0.00066992	3737	DP690-11	122.69	92.923			0.72624	0.8748	NaN	1	0	Median	64769000	11306000	53463000	13738	732	12817	26796;26797	64818;64819;64820;64821	64820		4	9606
SYWLDNFAK	1	0	Unmodified	1142.5397	0.53965977	1479	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	13	0													1				19.146	19.146	2	0.050968	14351	DP690-13	67.169	48.907			0.96657	1.1236	NaN	1	0	Median	31580000	17326000	14253000	13739	1479	12818	26798	64822;64823	64822		2	9606
SYYEANDVTSAINIIDEAFSK	1	0	Unmodified	2349.1012	0.10123677	2504	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	11	0											1						25.298	25.298	2	7.921E-29	23233	DP690-11	216	189.89			0.94555	1.1624	NaN	1	0	Median	9642900	5087300	4555600	13740	2504	12819	26799	64824;64825;64826	64824		3	9606
SYYENAEHHDAGFSVR	0	1	Unmodified	1880.8078	0.80778914	7	A1L390	PLEKHG3	Pleckstrin homology domain-containing family G member 3	yes	yes	0	0	0	10	0										1							13.115	13.115	3	9.9025E-05	6727	DP690-10	112.24	97.959			0.849	1.0505	NaN	1	0	Median	109860000	57609000	52254000	13741	7	12820	26800	64827;64828;64829	64827		3	9606
SYYQSSVQYLYR	0	1	Unmodified	1555.7307	0.73070802	1591	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	3	0			1														17.087	17.087	2	0.026406	11452	DP690-3	93.598	41.43			NaN	NaN	NaN	0	0	Median	3586500	3586500	0	13742	1591	12821	26801	64830	64830		1	9606
TAAALAPASLTSAR	0	1	Unmodified	1299.7147	0.71466402	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	9	0									1								14.909	14.909	2	4.9077E-05	8361	DP690-9	136.49	98.402			0.78299	0.97682	NaN	1	0	Median	17218000	9148500	8069500	13743	2422	12822	26802	64831;64832;64833;64834	64831		4	9606
TAACPNSSEVLYTSAK	1	0	Unmodified	1697.7931	0.79305028	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								13.908	13.908	2	0.0093399	7055	DP690-9	112.5	81.212			NaN	NaN	NaN	0	0	Median	4133200	4133200	0	13744	1762	12823	26803	64835	64835		1	9606
TAAELLQSQGSQAGGSQTLK	1	0	Unmodified	1974.0018	0.0017974991	1248	Q14141	SEPT6	Septin-6	yes	yes	0	0	0	13	0													1				14.831	14.831	2	1.2112E-34	8473	DP690-13	280.5	211.29			0.6116	0.71072	NaN	1	0	Median	22768000	9863600	12904000	13745	1248	12824	26804	64836;64837;64838;64839;64840	64838		5	9606
TAAELLQSQGSQAGGSQTLKR	1	1	Unmodified	2130.1029	0.10290853	1248	Q14141	SEPT6	Septin-6	yes	yes	0	0	1	13	0													1				13.476	13.476	3	0.013738	6645	DP690-13	94.856	58.814			NaN	NaN	NaN	0	0	Median	16546000	16546000	0	13746	1248	12825	26805	64841	64841		1	9606
TAAENDFVTLK	1	0	Unmodified	1207.6085	0.60846762	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	1.41	1		2		1												15.592	15.592	2	0.00055992	7056	DP690-1	111.61	77.22		+	0.043733	0.043673	NaN	1	0	Median	28639000	27990000	649090	13747	44	12826	26806;26807;26808;26809	64842;64843;64844;64845;64846;64847	64842		6	9606
TAAENDFVTLKK	2	0	Unmodified	1335.7034	0.70343063	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	5.5	4.58	1	2		2			1	1								1	13.175	13.175	2;3	8.279E-11	5592	DP690-2	194.06	130.24		+	NaN	NaN	NaN	0	0	Median	145120000	145120000	0	13748	44	12827	26810;26811;26812;26813;26814;26815;26816;26817	64848;64849;64850;64851;64852;64853;64854;64855;64856;64857;64858;64859;64860;64861;64862;64863	64853		16	9606
TAAFLLPILSQIYSDGPGEALR	0	1	Unmodified	2331.2474	0.2474475	96	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	10.7	1.25									1		1	1					25.776	25.776	2	1.732E-23	23404	DP690-11	206.2	206.2			0.77345	0.92229	NaN	1	0	Median	40597000	23169000	17428000	13749	96	12828	26818;26819;26820	64864;64865;64866;64867;64868;64869	64865		6	9606
TAAFVLPILQK	1	0	Unmodified	1199.7278	0.72779489	2525	Q9Y6V7	DDX49	Probable ATP-dependent RNA helicase DDX49	yes	yes	0	0	0	13	0													1				20.581	20.581	2	0.00010359	16127	DP690-13	143.73	125.29			0.74477	0.86582	NaN	1	0	Median	31397000	17001000	14396000	13750	2525	12829	26821	64870;64871;64872;64873;64874;64875	64872		6	9606
TAALGPDSMGGPVPR	0	1	Oxidation (M)	1440.7031	0.70311306	303	O95070	YIF1A	Protein YIF1A	yes	yes	0	1	0	15	0															1		13.388	13.388	2	0.031765	6628	DP690-15	87.001	39.029			NaN	NaN	NaN	0	0	Median	5501300	5501300	0	13751	303	12830	26822	64876	64876	315	1	9606
TAAPTTASAAPQGPLR	0	1	Unmodified	1508.7947	0.79470526	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	9.33	0.471									2	1							12.954	12.954	2	3.4248E-07	5781	DP690-9	163.45	103.38			0.51474	0.64374	NaN	1	0	Median	39031000	26478000	12553000	13752	1891	12831	26823;26824;26825	64877;64878;64879;64880;64881;64882;64883	64881		7	9606
TAASGIPYHSEVPVSLK	1	0	Unmodified	1754.9203	0.9202997	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							15.414	15.414	3	0.0011043	10138	DP690-10	77.324	77.324			0.59996	0.74057	NaN	1	0	Median	116280000	79187000	37097000	13753	1080	12832	26826	64884;64885	64884		2	9606
TAATLATHELR	0	1	Unmodified	1182.6357	0.63568542	1645	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	12	0												2					11.746	11.746	3	0.00047815	4451	DP690-12	103.21	77.322			0.9014	1.103	NaN	1	0	Median	4907100	3028700	1878400	13754	1645	12833	26827;26828	64886;64887;64888	64887		3	9606
TAATSVPAYEPLDSLDR	0	1	Unmodified	1804.8843	0.88430813	1929	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	11	0											1						18.174	18.174	2	0.0024116	13973	DP690-11	142.12	86.856			NaN	NaN	NaN	0	0	Median	0	0	0	13755	1929	12834	26829	64889	64889		1	9606
TAAVWEEIVGESNDKLR	1	1	Unmodified	1915.964	0.96395543	1840	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	1	14	0														1			18.861	18.861	3	8.2864E-08	14136	DP690-14	201.3	162.05			0.8261	0.96644	NaN	1	0	Median	110640000	54127000	56509000	13756	1840	12835	26830	64890;64891;64892;64893	64891		4	9606
TACAINKVLMGRVPDR	1	2	Oxidation (M)	1815.9448	0.94475709	1398;1680	Q52LJ0;Q8NCA5	FAM98B;FAM98A	Protein FAM98B;Protein FAM98A	no	no	0	1	2	11	0											1						29.87	29.87	3	0.068905	26772	DP690-11	59.68	42.595			NaN	NaN	NaN	0	0	Median	0	0	0	13757	1398;1680	12836	26831	64894	64894		1	9606
TACNVEEAFINTAK	1	0	Unmodified	1566.7348	0.73480712	1736	Q8WUD1	RAB2B	Ras-related protein Rab-2B	yes	yes	0	0	0	15	0															1		17.376	17.376	2	0.0012925	11823	DP690-15	96.756	70.864			0.9171	1.0824	NaN	1	0	Median	24453000	14120000	10334000	13758	1736	12837	26832	64895;64896	64896		2	9606
TACTSVEEFQVFKK	2	0	Unmodified	1672.8131	0.81305744	1554	Q7Z6M4	MTERF4	Transcription termination factor 4, mitochondrial;mTERF domain-containing protein 2 processed	yes	yes	0	0	1	14	0														1			15.802	15.802	3	0.0040066	9997	DP690-14	98.592	69.814			NaN	NaN	NaN	0	0	Median	22392000	22392000	0	13759	1554	12838	26833	64897;64898	64898		2	9606
TADDPSLSLIK	1	0	Unmodified	1158.6132	0.61321864	699	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	14	0														1			16.465	16.465	2	0.041615	10851	DP690-14	88.496	33.514			NaN	NaN	NaN	0	0	Median	21103000	0	21103000	13760	699	12839	26834	64899	64899		1	9606
TADGIVSHLKK	2	0	Unmodified	1167.6612	0.66117189	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	1	4	0				1													10.638	10.638	3	0.015678	3018	DP690-4	60.255	46.02			1.0973	1.1267	NaN	1	0	Median	5596600	2702300	2894300	13761	623	12840	26835	64900;64901	64901		2	9606
TADKLQEFLQTLR	1	1	Unmodified	1561.8464	0.84640648	2234	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	1	10	0										2							19.938	19.938	3	3.4811E-07	16647	DP690-10	156.08	99.129			NaN	NaN	NaN	0	0	Median	33112000	33112000	0	13762	2234	12841	26836;26837	64902;64903	64902		2	9606
TADLDFFRR	0	2	Unmodified	1139.5724	0.57235688	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	1	15	0															1		16.374	16.374	3	0.0060634	10595	DP690-15	78.149	40.337			0.92183	1	NaN	1	0	Median	5535400	2756800	2778600	13763	1048	12842	26838	64904;64905;64906;64907	64907		4	9606
TADSEVNTDQDIEK	1	0	Unmodified	1563.69	0.69002499	1682	Q8ND24	RNF214	RING finger protein 214	yes	yes	0	0	0	5.67	3.77			2								1						12.226	12.226	2	3.2371E-07	5284	DP690-11	169.65	124.63			NaN	NaN	NaN	0	0	Median	9288900	0	9288900	13764	1682	12843	26839;26840;26841	64908;64909;64910;64911	64908		4	9606
TADVTSLFGGEDTSR	0	1	Unmodified	1554.7162	0.71618016	86	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	10	0										1							18.267	18.267	2	0.0012229	14299	DP690-10	93.766	80.174			0.81889	1.0236	NaN	1	0	Median	32425000	17828000	14597000	13765	86	12844	26842	64912;64913	64912		2	9606
TAEAQLAYELQGAR	0	1	Unmodified	1519.7631	0.76307078	1268	Q14254	FLOT2	Flotillin-2	yes	yes	0	0	0	13	0													1				17.366	17.366	2	1.7066E-05	12102	DP690-13	127.52	84.223			0.82496	1.0061	NaN	1	0	Median	40966000	18146000	22820000	13766	1268	12845	26843	64914;64915	64915		2	9606
TAECETSEADNILLAGHLR	0	1	Unmodified	2098.9953	0.99533191	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															17.336	17.336	3	1.1463E-13	10552	DP690-2	183.73	161.96			0.9766	1.0185	NaN	1	0	Median	21100000	10835000	10265000	13767	2418	12846	26844	64916;64917	64917		2	9606
TAEEICESSSK	1	0	Unmodified	1239.5289	0.52889667	2033	Q9BX10	GTPBP2	GTP-binding protein 2	yes	yes	0	0	0	14	0														1			12.759	12.759	2	0.057661	5764	DP690-14	59.35	11.692			0.85386	0.86944	NaN	1	0	Median	2717000000	1473699999.9999998	1243200000	13768	2033	12847	26845	64918	64918		1	9606
TAEELMNFSK	1	0	Oxidation (M)	1184.5383	0.53833914	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	4	0				1													13.714	13.714	2	0.0029376	6848	DP690-4	103.7	57.728			2.1459	2.3273	NaN	1	0	Median	25546000	9897200	15649000	13769	826	12848	26846	64919;64920;64921;64922;64923;64924	64922	1246	6	9606
TAEELMNFSKGEENLMDAQVK	2	0	2 Oxidation (M)	2415.0934	0.093390977	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	2	1	4	0				1													15.819	15.819	3	6.9466E-05	9652	DP690-4	108.47	94.736			1.6805	1.7373	NaN	1	0	Median	14559000	5200100	9358700	13770	826	12849	26847	64925;64926;64927;64928	64926	1242;1246	4	9606
TAEEQGELAFQDAK	1	0	Unmodified	1535.7104	0.71036651	52	Q6KB66;CON__Q6KB66-1	KRT80	Keratin, type II cytoskeletal 80	yes	no	0	0	0	13	0													3				14.949	14.949	2	2.2146E-15	8647	DP690-13	231.07	187.3		+	0.691	0.80001	NaN	1	0	Median	44627000	26516000	18111000	13771	52	12850	26848;26849;26850	64929;64930;64931;64932	64930		4	9606
TAEEVAALIR	0	1	Unmodified	1071.5924	0.59242362	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							16.641	16.641	2	0.00071749	12001	DP690-10	112.41	77.116			0.79585	0.98441	NaN	1	0	Median	112150000	59254000	52895000	13772	1492	12851	26851	64933;64934	64933		2	9606
TAEHFLGFLR	0	1	Unmodified	1189.6244	0.62439245	522	P18074	ERCC2	TFIIH basal transcription factor complex helicase XPD subunit	yes	yes	0	0	0	11	0											1						17.435	17.435	3	0.045445	12954	DP690-11	51.528	34.307			4.8052	5.8797	NaN	1	0	Median	16618000	3020300	13598000	13773	522	12852	26852	64935	64935		1	9606
TAELAGITTLDDPLGHMPER	0	1	Oxidation (M)	2152.047	0.047033132	1960	Q99836	MYD88	Myeloid differentiation primary response protein MyD88	yes	yes	0	1	0	6	0						1											18.015	18.015	3	1.5374E-06	11773	DP690-6	127.49	127.49			0.62745	0.72058	NaN	1	0	Median	10304000	5858400	4445700	13774	1960	12853	26853	64936;64937	64936	2506	2	9606
TAELSGSSSTLEPIISSSAHHVTTVNSTNCK	1	0	Unmodified	3214.5412	0.54119927	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	10	0										1							16.035	16.035	4	0.00058921	11000	DP690-10	56.452	46.479			0.44174	0.54545	NaN	1	0	Median	57802000	36513000	21288000	13775	807	12854	26854	64938	64938		1	9606
TAESQTPTPSATSFFSGK	1	0	Unmodified	1842.8636	0.86357268	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	10.2	1.3									2		1	1					17.082	17.082	2	2.513E-33	12341	DP690-11	275.82	251.56			0.72182	0.81417	16.342	4	0	Median	790880000	469930000	320950000	13776	897	12855	26855;26856;26857;26858	64939;64940;64941;64942;64943;64944;64945;64946;64947;64948	64939		10	9606
TAFDEAIAELDTLNEDSYK	1	0	Unmodified	2143.9797	0.97972465	599	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	7	0							1										23.728	23.728	2	2.1571E-11	18939	DP690-7	169.79	124.68			0.8027	0.8537	NaN	1	0	Median	2600600	1203500	1397100	13777	599	12856	26859	64949;64950;64951	64950		3	9606
TAFGIISTVK	1	0	Unmodified	1035.5964	0.59644637	1040	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	15	0															1		17.104	17.104	2	0.028659	11588	DP690-15	71.349	43.467			0.74499	0.8776	NaN	1	0	Median	31329000	18063000	13266000	13778	1040	12857	26860	64952	64952		1	9606
TAFQEALDAAGDK	1	0	Unmodified	1335.6307	0.63065962	459	P10599	TXN	Thioredoxin	yes	yes	0	0	0	16	0																1	17.225	17.225	2	0.00037926	11352	DP690-16	110.64	83.333			0.95125	1.0976	NaN	1	0	Median	30932000	14571000	16361000	13779	459	12858	26861	64953;64954;64955;64956	64954		4	9606
TAGEKEPQLSEACGPTEEGAGER	1	1	Unmodified	2402.0656	0.065596322	1725	Q8TER5	ARHGEF40	Rho guanine nucleotide exchange factor 40	yes	yes	0	0	1	2	0		1															12.646	12.646	3	0.00054203	4933	DP690-2	77.543	60.395			1.0926	1.0756	NaN	1	0	Median	1778900	769690	1009200	13780	1725	12859	26862	64957;64958;64959	64958		3	9606
TAGLSDLY	0	0	Unmodified	838.40725	0.40724861	1958	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	13	0													1				18.855	18.855	1	0.069502	13928	DP690-13	73.039	56.112			NaN	NaN	NaN	0	0	Median	0	0	0	13781	1958	12860	26863	64960	64960		1	9606
TAGQPEGGPGADFGQSCFPAEAGR	0	1	Unmodified	2363.0237	0.023671928	1287	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	11	0											1						16.677	16.677	2	3.5745E-15	11736	DP690-11	166.36	133.04			NaN	NaN	NaN	0	0	Median	13755000	13755000	0	13782	1287	12861	26864	64961;64962	64961		2	9606
TAHLDEEVNKGDILVVATGQPEMVK	2	0	Oxidation (M)	2708.3691	0.36909555	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	1	1	7	4			1								1						16.26	16.26	4	8.8323E-05	10347	DP690-3	112.47	90.805			0.80645	0.87032	13.06	2	0	Median	528350000	266820000	261530000	13783	470	12862	26865;26866	64963;64964;64965;64966;64967;64968	64968	568	6	9606
TAHLDEEVNKGDILVVATGQPEMVK	2	0	Unmodified	2692.3742	0.37418093	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	11	0											1						17.087	17.087	4	4.4371E-05	12428	DP690-11	118.37	106.65			0.77183	0.84702	NaN	1	0	Median	385830000	214640000	171190000	13784	470	12862	26867	64969;64970	64969		2	9606
TAICNLILGNPPSK	1	0	Unmodified	1496.8021	0.80209882	2205	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	0	0	0	15	0															1		18.43	18.43	2	0.0034022	13230	DP690-15	125.36	90.09			NaN	NaN	NaN	0	0	Median	10993000	0	10993000	13785	2205	12863	26868	64971;64972	64972		2	9606
TAIHEVMEQGR	0	1	Unmodified	1269.6136	0.61356977	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	10.5	0.866									1		3						11.805	11.805	2;3	5.2079E-05	4673	DP690-11	147.28	115.44			0.86346	0.93515	11.267	3	0	Median	495270000	263160000	232110000	13786	581	12864	26869;26870;26871;26872	64973;64974;64975;64976;64977;64978;64979;64980;64981;64982	64974		10	9606
TAIHEVMEQGR	0	1	Oxidation (M)	1285.6085	0.60848439	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	1	0	8.33	3.77			1								2						10.398	10.398	3	0.0018433	2678	DP690-11	111.86	74.139			0.75436	0.79205	NaN	1	0	Median	120270000	67223000	53046000	13787	581	12864	26873;26874;26875	64983;64984;64985;64986;64987	64983	768	5	9606
TAITVEHLAIK	1	0	Unmodified	1194.6972	0.69722304	2195	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	11	0											2						14.404	14.404	2;3	0.0022617	8529	DP690-11	95.775	95.775			1.743	2.107	49.29	2	0	Median	110730000	37754000	72973000	13788	2195	12865	26876;26877	64988;64989;64990;64991;64992	64988		5	9606
TALAATNPAVR	0	1	Unmodified	1083.6037	0.60365701	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							12.229	12.229	2	0.0078079	5485	DP690-10	82.749	47.131			0.81868	1.0105	NaN	1	0	Median	126640000	68303000	58337000	13789	1240	12866	26878	64993	64993		1	9606
TALALAIAQELGSK	1	0	Unmodified	1384.7926	0.79257999	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	13	0													1				21.239	21.239	2	1.1072E-14	16913	DP690-13	229	199.76			0.92282	1.0672	NaN	1	0	Median	55122000	28293000	26829000	13790	2431	12867	26879	64994;64995;64996;64997;64998;64999	64994		6	9606
TALALEVGDIVK	1	0	Unmodified	1227.7075	0.70745338	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	7	0.816						1	1	1									19.177	19.177	2	9.3115E-08	12987	DP690-6	202.96	151.01			0.80614	0.88217	1.2713	2	0	Median	351900000	185130000	166780000	13791	753	12868	26880;26881;26882	65000;65001;65002;65003;65004;65005;65006;65007	65001		8	9606
TALFEEISR	0	1	Unmodified	1064.5502	0.55022446	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							17.181	17.181	2	0.0007509	12648	DP690-10	136.27	59.494			0.77131	0.92223	NaN	1	0	Median	210430000	120750000	89678000	13792	1285	12869	26883	65008;65009	65008		2	9606
TALHGESNSVLIIGPR	0	1	Unmodified	1662.9053	0.90531834	196	O43929	ORC4	Origin recognition complex subunit 4	yes	yes	0	0	0	13	0													1				15.185	15.185	3	2.4555E-06	8985	DP690-13	128.85	128.85		+	0.76754	0.92957	NaN	1	0	Median	61274000	33383000	27891000	13793	196	12870	26884	65010;65011;65012	65010		3	9606
TALIHDGLAR	0	1	Unmodified	1065.5931	0.59309232	582	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	12	4								2								2	12.378	12.378	2;3	4.6149E-05	5075	DP690-16	159.34	121.52			0.98336	1.11	5.7367	4	0	Median	159950000	81481000	78465000	13794	582	12871	26885;26886;26887;26888	65013;65014;65015;65016;65017;65018;65019;65020;65021;65022;65023;65024;65025;65026;65027;65028	65014		16	9606
TALINSTGEEVAMR	0	1	Unmodified	1490.7399	0.73989249	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.8	0.433											1	3					15.611	15.611	2	2.388E-17	9827	DP690-12	201.09	155.93			0.82011	0.93204	NaN	1	0	Median	288070000	117480000	170580000	13795	359	12872	26889;26890;26891;26892	65029;65030;65031;65032;65033;65034;65035;65036	65033		8	9606
TALINSTGEEVAMR	0	1	Oxidation (M)	1506.7348	0.73480712	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	1	0	12.3	1.7											2	3				1	14.52	14.52	2	2.773E-05	7757	DP690-12	127.42	95.789			0.85425	0.97143	0.22276	2	0	Median	336220000	124110000	212120000	13796	359	12872	26893;26894;26895;26896;26897;26898	65037;65038;65039;65040;65041;65042;65043;65044;65045;65046;65047;65048;65049	65040	374	13	9606
TALPAQSAATLPAR	0	1	Unmodified	1366.7569	0.75686319	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							14.161	14.161	2	7.9012E-05	8285	DP690-10	152.69	130.11			0.60323	0.74417	NaN	1	0	Median	130460000	80959000	49505000	13797	1080	12873	26899	65050;65051	65051		2	9606
TALSEEEEEEREFR	0	2	Unmodified	1752.7802	0.78023698	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	1	9	0									1								14.341	14.341	3	0.064816	7696	DP690-9	45.357	31.936			0.94367	1.0229	NaN	1	0	Median	9755500	5026500	4729000	13798	2217	12874	26900	65052;65053	65053		2	9606
TALSEEEEEEREFRK	1	2	Unmodified	1880.8752	0.8752	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	2	9	0									1								13.168	13.168	3	0.015368	6042	DP690-9	61.375	46.406			0.97016	1.0664	NaN	1	0	Median	20004000	8607200	11397000	13799	2217	12875	26901	65054	65054		1	9606
TALVANTSNMPVAAR	0	1	Oxidation (M)	1530.7824	0.78242601	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	1	0	8	4				1								1					12.638	12.638	2	1.9215E-05	5636	DP690-12	128.08	94.211			0.77327	0.91345	2.0692	2	0	Median	36229000	20247000	15982000	13800	694	12876	26902;26903	65055;65056;65057;65058;65059;65060	65056	1004	6	9606
TALVANTSNMPVAAR	0	1	Unmodified	1514.7875	0.78751139	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	12	0												2					14.766	14.766	2	0.0012779	8674	DP690-12	152.69	100.11			NaN	NaN	NaN	0	0	Median	0	0	0	13801	694	12876	26904;26905	65061;65062	65062		2	9606
TALVERDDFSSGTSSR	0	2	Unmodified	1726.8122	0.81220581	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	1	7.5	3.5				1							1						12.976	12.976	3	0.0079683	5999	DP690-4	68.978	53.035			0.85483	0.89567	NaN	1	0	Median	11665000	6225600	5439000	13802	737	12877	26906;26907	65063;65064	65064		2	9606
TALYVTPLDR	0	1	Unmodified	1147.6237	0.62372375	2334	Q9UFW8	CGGBP1	CGG triplet repeat-binding protein 1	yes	yes	0	0	0	16	0																1	16.533	16.533	2	0.00067415	10515	DP690-16	113.66	83.34			0.75564	0.85649	NaN	1	0	Median	44833000	25737000	19095000	13803	2334	12878	26908	65065;65066;65067;65068	65067		4	9606
TAMNVNDLFLAIAK	1	0	Oxidation (M)	1535.8018	0.80176447	936	P61020	RAB5B	Ras-related protein Rab-5B	yes	yes	0	1	0	15	0															1		20.896	20.896	2	0.0001366	16130	DP690-15	162.26	120.56			0.79834	0.93841	NaN	1	0	Median	8421800	4237900	4183900	13804	936	12879	26909	65069;65070;65071;65072	65070	1455	4	9606
TAMNVNEIFMAIAK	1	0	2 Oxidation (M)	1583.7687	0.76874978	830	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	2	0	15	0															3		19.819	19.819	2	5.5491E-05	15005	DP690-15	171.67	31.905			0.85932	1.0078	NaN	1	0	Median	34957000	15556000	19401000	13805	830	12880	26910;26911;26912	65073;65074;65075;65076	65073	1262;1263	4	9606
TANAGPPRPSSSGYK	1	1	Unmodified	1488.7321	0.732105	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	1	11	0											1						10.386	10.386	3	0.00040795	2641	DP690-11	97.631	53.264			0.70178	0.71913	NaN	1	0	Median	659200000	375080000	284120000	13806	144	12881	26913	65077;65078	65077		2	9606
TANFVAVDTELSGLGDRK	1	1	Unmodified	1891.964	0.96395543	1863	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	1	12	0												1					17.73	17.73	3	3.9856E-10	12872	DP690-12	150.92	104.6			0.81405	0.94292	NaN	1	0	Median	116190000	63122000	53065000	13807	1863	12882	26914	65079;65080;65081;65082	65082		4	9606
TANYLISIDPVDLSR	0	1	Unmodified	1675.8781	0.87810054	252	O75386	TULP3	Tubby-related protein 3	yes	yes	0	0	0	13	0													1				21.029	21.029	2	0.002698	16777	DP690-13	86.803	64.082			0.7527	0.90964	NaN	1	0	Median	8954000	4649700	4304300	13808	252	12883	26915	65083	65083		1	9606
TAPLLLSYYLIK	1	0	Unmodified	1393.8221	0.82208921	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	11	0											1						22.246	22.246	2	0.01354	19578	DP690-11	73.887	58.347			0.76235	0.942	NaN	1	0	Median	16610000	9493100	7116600	13809	1156	12884	26916	65084;65085	65084		2	9606
TAPSSSCTAVASAASRPDSTHMVEAR	0	2	Unmodified	2646.2126	0.21261169	1997	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	1	10	0										1							12.766	12.766	4	0.064583	6326	DP690-10	47.288	19.755			NaN	NaN	NaN	0	0	Median	34711000	34711000	0	13810	1997	12885	26917	65086	65086		1	9606
TAQEKDSLITPHVSR	1	1	Unmodified	1680.8795	0.87949752	808;16;446	P49792;O14715;Q99666;A6NKT7;Q7Z3J3;P0DJD0;P0DJD1	RANBP2;RGPD8;RGPD5;RGPD3;RGPD4;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	no	no	0	0	1	9	0									1								11.477	11.477	3	0.00025058	3965	DP690-9	100.68	82.013			0.86963	1.0086	NaN	1	0	Median	5649000	3243000	2406000	13811	808;16;446	12886	26918	65087;65088;65089;65090	65090		4	9606
TAQEVETYR	0	1	Unmodified	1095.5197	0.51965261	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	12	0												1					11.058	11.058	2	0.00016563	3551	DP690-12	168.27	101.23			0.8372	0.94165	NaN	1	0	Median	212740000	113880000	98864000	13812	517	12887	26919	65091;65092;65093;65094	65094		4	9606
TAQIMFQAYGDK	1	0	Oxidation (M)	1387.6442	0.6442012	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	0		1															15.138	15.138	2	0.0080898	7886	DP690-2	85.963	61.498			1.0784	1.0829	NaN	1	0	Median	6295300	3120700	3174500	13813	1179	12888	26920	65095;65096;65097;65098	65096	1828	4	9606
TARPFGAPPPADSAPQQNGQPLRPLVPDASK	1	2	Unmodified	3179.6476	0.64759409	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	2	13	0													1				15.261	15.261	4	0.00011572	9231	DP690-13	66.474	57.544			0.4202	0.47553	NaN	1	0	Median	39903000	27313000	12590000	13814	2194	12889	26921	65099	65099		1	9606
TARPFGIQAPGGTSQMER	0	2	Oxidation (M)	1918.9319	0.93194379	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	1	1	11	0											1						13.428	13.428	3	0.0018	7117	DP690-11	73.76	57.587			0.64441	0.79437	NaN	1	0	Median	142800000	82084000	60721000	13815	1653	12890	26922	65100;65101	65101	2279	2	9606
TARPFGIQAPGGTSQMER	0	2	Unmodified	1902.937	0.93702917	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	1	11	0											1						14.431	14.431	3	0.0496	8615	DP690-11	77.795	52.878			0.77584	0.95639	NaN	1	0	Median	101440000	68986000	32454000	13816	1653	12890	26923	65102	65102		0	9606
TARPNITDNKDGTITVR	1	2	Unmodified	1870.9861	0.98608786	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	2	6	4		2								2							12.13	12.13	3;4	1.5872E-06	5349	DP690-10	136.36	114.5			0.85999	0.8455	9.6638	4	0	Linear	772450000	423210000	349230000	13817	1270	12891	26924;26925;26926;26927	65103;65104;65105;65106;65107;65108;65109;65110	65103		8	9606
TASDVVQPAAVQAQGQVNDENR	0	1	Unmodified	2296.1044	0.10436509	2034	Q9BX40	LSM14B	Protein LSM14 homolog B	yes	yes	0	0	0	13	0													1				14.186	14.186	2	1.1224000000000001E-57	7607	DP690-13	276.64	221.47			NaN	NaN	NaN	0	0	Median	0	0	0	13818	2034	12892	26928	65111	65111		1	9606
TASEMVLADDNFSTIVAAVEEGR	0	1	Oxidation (M)	2440.1428	0.14278401	506	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	1	0	11	0											2						23.348	23.348	2	4.6425999999999995E-36	20960	DP690-11	239.51	207.8			0.92079	1.1097	NaN	1	0	Median	3632500	1747200	1885400	13819	506	12893	26929;26930	65112;65113;65114;65115	65115	639	4	9606
TASPLEHILQTLFGK	1	0	Unmodified	1653.909	0.90900673	1997	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	10.2	0.4										4	1						24.784	24.784	2;3	9.5636E-06	22844	DP690-10	173.19	132.11			0.80673	0.973	12.436	2	0	Median	15842000	9065500	6776300	13820	1997	12894	26931;26932;26933;26934;26935	65116;65117;65118;65119;65120;65121;65122;65123;65124;65125	65117		10	9606
TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR	0	2	Unmodified	3455.7281	0.72808884	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	10	0										1							16.856	16.856	3	0.0051525	12209	DP690-10	74.516	53.38			NaN	NaN	NaN	0	0	Median	0	0	0	13821	1111	12895	26936	65126	65126		1	9606
TATANGFQMVTSGVQSK	1	0	Oxidation (M)	1741.8305	0.83049842	1812	Q969V3	NCLN	Nicalin	yes	yes	0	1	0	13	0													1				14.294	14.294	2	0.025473	7765	DP690-13	98.337	64.467			NaN	NaN	NaN	0	0	Median	0	0	0	13822	1812	12896	26937	65127	65127	2390	1	9606
TATCHSSSSPPIDAASAEPYGFR	0	1	Unmodified	2408.0703	0.07028777	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	9.5	0.5									1	1							15.212	15.212	3	0.0022677	9850	DP690-10	84.371	58.752			NaN	NaN	NaN	0	0	Median	33303000	33303000	0	13823	763	12897	26938;26939	65128;65129;65130	65128		3	9606
TATESFASDPILYR	0	1	Unmodified	1569.7675	0.76748745	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	4	0				1													17.771	17.771	2	1.6132E-06	12093	DP690-4	190.57	150.63			0.80885	0.94254	NaN	1	0	Median	12253000	6869900	5382900	13824	488	12898	26940	65131;65132;65133;65134;65135;65136	65134		6	9606
TATESFASDPILYRPVAVALDTK	1	1	Unmodified	2464.285	0.28495522	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	7.8	3.6				2			1					2					20.005	20.005	2;3	1.5222E-15	14678	DP690-4	170.98	148.18			0.80612	0.95255	4.3158	4	0	Median	110350000	58050000	52298000	13825	488	12899	26941;26942;26943;26944;26945	65137;65138;65139;65140;65141;65142;65143;65144;65145;65146;65147	65144		11	9606
TATFENIVCVLNR	0	1	Unmodified	1535.7766	0.77661235	1172	Q12933	TRAF2	TNF receptor-associated factor 2	yes	yes	0	0	0	4	0				1													20.531	20.531	2	0.00089795	15336	DP690-4	104.22	83.189			0.75175	0.86897	NaN	1	0	Median	3931700	2483900	1447800	13826	1172	12900	26946	65148;65149	65149		2	9606
TATLRPYLSAVR	0	2	Acetyl (Protein N-term)	1388.7776	0.77759863	917	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	1	0	1	16	0																1	18.501	18.501	2	1.2123E-05	12895	DP690-16	128.51	97.95			0.82352	0.87007	NaN	1	0	Median	55487000	29337000	26150000	13827	917	12901	26947	65150;65151;65152;65153	65152		4	9606
TATPEIVDNKDGTVTVR	1	1	Unmodified	1814.9374	0.93740633	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10.3	0.471										2	1						14.335	14.335	2;3	2.1409E-17	8525	DP690-10	225.63	142.55			0.59774	0.75771	7.6541	3	0	Median	693980000	400420000	293560000	13828	250	12902	26948;26949;26950	65154;65155;65156;65157;65158;65159;65160;65161	65156		8	9606
TATSLAEGLSLVVSPDSIHSVAPENEGR	0	1	Unmodified	2835.425	0.42503053	2004	Q9BTV4	TMEM43	Transmembrane protein 43	yes	yes	0	0	0	14	0														1			20.275	20.275	3	5.1969E-18	15909	DP690-14	172.77	156.81			0.59556	0.7222	NaN	1	0	Median	27353000	11107000	16246000	13829	2004	12903	26951	65162;65163;65164;65165	65162		4	9606
TATTQETDGFQVK	1	0	Unmodified	1424.6783	0.6783381	1862	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	0	12	0												1					13.342	13.342	2	0.0050136	6650	DP690-12	84.31	65.704			0.93327	1.118	NaN	1	0	Median	31165000	16428000	14736000	13830	1862	12904	26952	65166;65167	65167		2	9606
TATYITELANALSYCHSK	1	0	Unmodified	2041.9779	0.97789093	124	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	13	0													1				20.396	20.396	3	3.232E-05	16015	DP690-13	121.03	104.38			0.83275	0.96362	NaN	1	0	Median	49155000	27486000	21668000	13831	124	12905	26953	65168;65169;65170;65171	65170		4	9606
TAVAPIER	0	1	Unmodified	855.48142	0.48141661	381;473	P05141;Q9H0C2;P12236	SLC25A5;SLC25A31;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	10	0										3							11.152	11.152	2	0.020928	3851	DP690-10	110.31	53.589			NaN	NaN	NaN	0	0	Median	696670000	696670000	0	13832	381;473	12906	26954;26955;26956	65172;65173;65174;65175	65172		4	9606
TAVCDIPPR	0	1	Unmodified	1027.5121	0.51206481	1034;406;2017;370;1389	P07437;A6NNZ2;P68371;Q9BVA1;Q13885;P04350;Q3ZCM7	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB4A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-8 chain	no	no	0	0	0	8.33	4.19					5			1					2			1	12.687	12.687	2	0.00087191	4202	DP690-5	127.46	77.421			0.89496	0.95567	8.4731	8	0	Median	2270000000	1261900000	1008199999.9999999	13833	406;1034;2017;370;1389	12907	26957;26958;26959;26960;26961;26962;26963;26964;26965	65176;65177;65178;65179;65180;65181;65182;65183;65184;65185;65186;65187;65188;65189;65190;65191;65192;65193;65194;65195;65196;65197;65198;65199;65200;65201;65202;65203;65204;65205;65206;65207;65208;65209;65210;65211	65198		36	9606
TAVDGPDLEMLTGQER	0	1	Oxidation (M)	1746.8094	0.80942862	1271	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	1	0	13	0													1				17.587	17.587	2	8.8986E-07	12315	DP690-13	156.52	120.81			0.77078	0.9204	NaN	1	0	Median	99146000	57882000	41263000	13834	1271	12908	26966	65212;65213;65214	65214	1953	3	9606
TAVDGPDLEMLTGQER	0	1	Unmodified	1730.8145	0.814514	1271	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	13	0													1				19.044	19.044	2	1.0981E-10	14175	DP690-13	196.02	159.58			0.75064	0.90977	NaN	1	0	Median	58687000	33324000	25363000	13835	1271	12908	26967	65215;65216;65217;65218	65216		4	9606
TAVDSLVAYSVK	1	0	Unmodified	1251.6711	0.67106787	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	12	0												1					17.459	17.459	2	0.00016105	12449	DP690-12	128.03	107.75			0.84179	0.99647	NaN	1	0	Median	80177000	43010000	37167000	13836	1131	12909	26968	65219;65220;65221;65222	65222		4	9606
TAVETAVLLLR	0	1	Unmodified	1184.7129	0.71287311	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	8	4				1								1					19.786	19.786	2	9.7954E-05	14380	DP690-4	175.91	175.91			1.1535	1.3237	31.597	2	0	Median	93665000	44437000	49228000	13837	791	12910	26969;26970	65223;65224;65225;65226;65227	65226		5	9606
TAVHAGNINFK	1	0	Acetyl (Protein N-term)	1212.6251	0.62512073	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	1	0	0	7	4			1								1						14.882	14.882	2	0.00042149	9187	DP690-11	157.34	119.8			1.1611	1.2551	49.01	2	0	Median	330270000	160920000	169350000	13838	657	12911	26971;26972	65228;65229;65230;65231	65228		4	9606
TAVISIGNQLLHLK	1	0	Unmodified	1505.893	0.89296274	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9.5	0.5									1	1							18.894	18.894	3	0.00031915	15200	DP690-10	101.72	101.72			0.75247	0.93032	NaN	1	0	Median	61120000	32172000	28948000	13839	1762	12912	26973;26974	65232;65233;65234	65232		3	9606
TAVPSPVEAAAASDPAAAR	0	1	Unmodified	1750.885	0.88497683	1295	Q147X3	NAA30	N-alpha-acetyltransferase 30	yes	yes	0	0	0	13	0													1				15.948	15.948	2	0.00066116	10119	DP690-13	97.631	66.2			0.8889	1.0892	NaN	1	0	Median	31881000	16666000	15215000	13840	1295	12913	26975	65235;65236	65235		2	9606
TAVVVGTITDDVR	0	1	Unmodified	1344.7249	0.72489436	1129	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	15.5	0.5															1	1	16.329	16.329	2	4.8029E-06	10467	DP690-15	192.38	161.58			1.1185	1.2629	27.064	2	0	Median	138310000	69787000	68527000	13841	1129	12914	26976;26977	65237;65238;65239;65240;65241;65242	65240		6	9606
TAVWEEGPGGELVIQQK	1	0	Unmodified	1839.9367	0.93667805	268	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	14	0														1			18.157	18.157	2	1.2481E-12	13261	DP690-14	203.61	175.56			0.64868	0.78603	NaN	1	0	Median	69781000	42540000	27242000	13842	268	12915	26978	65243;65244;65245;65246	65245		4	9606
TCDFLPDFK	1	0	Unmodified	1141.5114	0.51139611	818	P50452	SERPINB8	Serpin B8	yes	yes	0	0	0	6	0						1											18.774	18.774	2	0.071298	12697	DP690-6	60.828	27.936			0.7865	0.87606	NaN	1	0	Median	3271000	1554200	1716800	13843	818	12916	26979	65247	65247		1	9606
TCEEHQLCVVAVLPHILDTGAAGR	0	1	Unmodified	2645.3054	0.30538986	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	7.67	3.77					2								1				19.363	19.363	3;4	3.3197E-10	13543	DP690-5	144.95	144.95			0.76661	0.8483	9.647	2	0	Median	208430000	118090000	90342000	13844	1318	12917	26980;26981;26982	65248;65249;65250;65251;65252;65253;65254;65255	65252		8	9606
TCEERPAEDGSDEEDPDSMEAPTR	0	2	Unmodified	2722.0606	0.060646879	2128	Q9H6Y2	WDR55	WD repeat-containing protein 55	yes	yes	0	0	1	13	0													1				12.92	12.92	3	1.0238E-15	5844	DP690-13	170.92	170.92			0.45245	0.5195	NaN	1	0	Median	16284000	11510000	4774500	13845	2128	12918	26983	65256;65257;65258;65259;65260	65256		5	9606
TCEGYNEIIFPHCACDSR	0	1	Unmodified	2227.9085	0.90850752	1892	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	12	0												1					16.402	16.402	3	0.0024872	10958	DP690-12	71.402	67.968			0.79426	0.94134	NaN	1	0	Median	41025000	22171000	18854000	13846	1892	12919	26984	65261	65261		1	9606
TCENFIR	0	1	Unmodified	938.428	0.42800083	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	12	0												1					12.708	12.708	2	0.00017614	5901	DP690-12	148.28	85.567			NaN	NaN	NaN	0	0	Median	40712000	40712000	0	13847	1200	12920	26985	65262	65262		1	9606
TCILDVNPQALK	1	0	Unmodified	1370.7228	0.72278587	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	12	0												1					17.838	17.838	2	4.7378E-05	12874	DP690-12	134.23	86.136			0.77024	0.91359	NaN	1	0	Median	77746000	43167000	34579000	13848	2280	12921	26986	65263;65264;65265;65266	65263		4	9606
TCLHAILNILEK	1	0	Unmodified	1423.7857	0.78572048	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										1							19.157	19.157	3	0.00039436	15514	DP690-10	103.76	77.848			0.84821	1.0386	NaN	1	0	Median	29171000	17721000	11450000	13849	1783	12922	26987	65267;65268	65267		2	9606
TCMIATISPGISSCEYTLNTLR	0	1	Oxidation (M)	2503.1757	0.17568082	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	1	0	11	0											1						19.371	19.371	2	2.7771999999999997E-23	15707	DP690-11	206.43	184.52			0.99591	1.1886	NaN	1	0	Median	34696000	19251000	15444000	13850	1950	12923	26988	65269;65270;65271;65272;65273	65270	2487	5	9606
TCMIATISPGISSCEYTLNTLR	0	1	Unmodified	2487.1808	0.1807662	1950	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	11	0											1						20.402	20.402	2	7.6652E-37	17126	DP690-11	236.12	236.12			0.98898	1.1854	NaN	1	0	Median	27949000	15726000	12223000	13851	1950	12923	26989	65274;65275;65276;65277;65278	65275		5	9606
TCNCETEDYGEK	1	0	Unmodified	1504.5446	0.54462308	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	11	0											1						10.703	10.703	2	0.012819	3107	DP690-11	105.4	93.761			NaN	NaN	NaN	0	0	Median	0	0	0	13852	1078	12924	26990	65279	65279		1	9606
TCNVLVALEQQSPDIAQGVHLDR	0	1	Unmodified	2562.286	0.28603463	634	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	5	0					1												20.283	20.283	3	2.1934E-08	14736	DP690-5	140.88	115.17			NaN	NaN	NaN	0	0	Median	12157000	0	12157000	13853	634	12925	26991	65280;65281	65280		2	9606
TCPFFFPFDTR	0	1	Unmodified	1433.6438	0.64380726	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	6	4		1								1							22.193	22.193	2	0.026342	19650	DP690-10	70.399	49.621			0.78418	0.88496	33.168	2	0	Median	23899000	15765000	8133600	13854	1282	12926	26992;26993	65282;65283;65284;65285	65282		4	9606
TCQVLEALNVLVNRPNIR	0	2	Unmodified	2108.1524	0.15244168	120	O14933	UBE2L6	Ubiquitin/ISG15-conjugating enzyme E2 L6	yes	yes	0	0	1	8	0								1									20.948	20.948	3	7.1222E-07	14598	DP690-8	138.28	114.07			0.61391	0.64863	NaN	1	0	Median	15808000	9659000	6148800	13855	120	12927	26994	65286;65287;65288;65289	65287		4	9606
TCSDDVVDYFKR	1	1	Unmodified	1503.6664	0.6663932	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	1	13	0													1				16.244	16.244	3	0.0010121	10497	DP690-13	89.356	59.048			1.0418	1.2247	NaN	1	0	Median	54616000	26400000	28217000	13856	1906	12928	26995	65290	65290		1	9606
TCSPASLSQASADLEATLR	0	1	Unmodified	1976.9473	0.94731909	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	9.17	2.54				1					2	1	1	1					20.241	20.241	2	5.2724E-31	16917	DP690-11	247.73	203.12			0.86848	1.0599	25.437	4	0	Median	215160000	111610000	103550000	13857	1269	12929	26996;26997;26998;26999;27000;27001	65291;65292;65293;65294;65295;65296;65297;65298;65299;65300;65301;65302;65303;65304;65305	65295		15	9606
TCTDIKPEWLVK	2	0	Unmodified	1488.7647	0.76465068	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	1	11	0											1						15.943	15.943	3	0.013449	10850	DP690-11	66.326	49.588			0.71803	0.83012	NaN	1	0	Median	83748000	46478000	37270000	13858	161	12930	27002	65306	65306		1	9606
TCTTVAFTQVNSEDK	1	0	Unmodified	1699.7723	0.77231483	984	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	14.5	0.5														1	1		14.515	14.515	2	0.00029775	8268	DP690-14	112.64	93.003			0.77506	0.92564	NaN	1	0	Median	19207000	10781000	8425600	13859	984	12931	27003;27004	65307;65308	65307		2	9606
TCTTVAFTQVNSEDKGALAK	2	0	Unmodified	2140.047	0.047033132	984	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	14.5	0.5														1	1		14.465	14.465	3	8.7681E-18	8131	DP690-14	199.05	169.92			0.98507	1.114	2.4361	2	0	Median	183180000	88206000	94970000	13860	984	12932	27005;27006	65309;65310;65311;65312;65313;65314	65312		6	9606
TDAAVSFAK	1	0	Acetyl (Protein N-term)	950.47091	0.4709115	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	0	12.7	2.62									1					1	1		16.883	16.883	1	3.2103E-05	12189	DP690-15	80.438	21.656			0.84707	0.91	8.6589	2	0	Median	1367300000	712320000	654930000	13861	381	12933	27007;27008;27009	65315;65316;65317	65316		2	9606
TDAAVSFAKDFLAGGVAAAISK	2	0	Acetyl (Protein N-term)	2151.1212	0.12118435	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	1	9.5	0.5									2	2							26.32	26.32	2	4.7725E-20	21945	DP690-9	189.81	153.36			0.79412	0.90954	5.7969	3	0	Median	5653600	3132800	2520800	13862	381	12934	27010;27011;27012;27013	65318;65319;65320;65321;65322;65323;65324;65325;65326;65327;65328;65329;65330	65328		13	9606
TDASSASSFLDSDELER	0	1	Unmodified	1828.7963	0.79628098	1277	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	10.7	1.25									1		1	1					18.274	18.274	2	1.6099999999999999E-22	13562	DP690-12	240.18	199.45			0.96485	1.1463	NaN	1	0	Median	39551000	22060000	17491000	13863	1277	12935	27014;27015;27016	65331;65332;65333;65334;65335;65336	65332		6	9606
TDAVEALTALNHYQIR	0	1	Unmodified	1813.9323	0.93226137	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												2					19.015	19.015	2;3	8.8889E-13	14637	DP690-12	210.44	179.62			0.72646	0.84172	7.8046	2	0	Median	248020000	160140000	87882000	13864	1750	12936	27017;27018	65337;65338;65339;65340	65339		3	9606
TDCDIEDDRLAAMFR	0	2	Oxidation (M)	1842.7876	0.78764732	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	2	0		1															16.425	16.425	3	0.0048499	9399	DP690-2	71.176	53.774			1.0802	1.0789	NaN	1	0	Median	5078900	2564100	2514800	13865	1179	12937	27019	65341;65342	65342	1829	2	9606
TDEFQLHTNVNDGTEFGGSIYQK	1	0	Unmodified	2599.1827	0.18267499	552	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	14	0														1			17.463	17.463	3	1.7255E-43	12276	DP690-14	198.45	164.82			NaN	NaN	NaN	0	0	Median	37280000	37280000	0	13866	552	12938	27020	65343;65344	65343		2	9606
TDEKVDESGPPAPSKPR	2	1	Unmodified	1808.8905	0.89045614	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	2	9	0									1								10.295	10.295	4	0.0076869	2501	DP690-9	81.656	71.998			0.45039	0.48191	NaN	1	0	Median	8069700	4890600	3179000	13867	1377	12939	27021	65345	65345		1	9606
TDELIKDAPTTQHDK	2	0	Unmodified	1710.8424	0.84244331	1551	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	1	10	0										1							11.169	11.169	3	0.00037696	3980	DP690-10	99.069	68.164			0.79159	0.9818	NaN	1	0	Median	87193000	42274000	44918000	13868	1551	12940	27022	65346	65346		1	9606
TDFFIGGEEGMAEK	1	0	Oxidation (M)	1545.6657	0.6657245	2432	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	1	0	6	0						1											16.894	16.894	2	0.0026445	10446	DP690-6	92.792	74.186			1.2548	1.4285	NaN	1	0	Median	7475700	3546200	3929500	13869	2432	12941	27023	65347	65347	2871	1	9606
TDFKEEPEPGFKR	2	1	Unmodified	1578.7678	0.7678218	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	2	7	4			1								1						12.034	12.034	3;4	0.017717	4634	DP690-3	92.856	55.912			NaN	NaN	NaN	0	0	Median	9487200	9487200	0	13870	770	12942	27024;27025	65348;65349	65349		2	9606
TDGALLVNAMFFKPHWDEK	2	0	Oxidation (M)	2234.083	0.083024708	819	P50454	SERPINH1	Serpin H1	yes	yes	0	1	1	9	4					1								1				18.548	18.548	4	2.0707E-08	12503	DP690-5	144.3	120.67			0.76939	0.80594	25.715	2	0	Median	124230000	68776000	55455000	13871	819	12943	27026;27027	65350;65351;65352;65353;65354	65352	1234	5	9606
TDGALLVNAMFFKPHWDEK	2	0	Unmodified	2218.0881	0.088110086	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	1	5	0					1												19.896	19.896	4	3.3301E-10	14272	DP690-5	152.94	127.74			0.84195	0.82136	NaN	1	0	Median	34133000	18573000	15559000	13872	819	12943	27028	65355;65356;65357;65358	65358		4	9606
TDGEGEDPECLGEGK	1	0	Unmodified	1591.6308	0.63079556	1766	Q8WZA9	IRGQ	Immunity-related GTPase family Q protein	yes	yes	0	0	0	4	0				1													13.141	13.141	2	0.018416	6073	DP690-4	107.97	95.391			NaN	NaN	NaN	0	0	Median	0	0	0	13873	1766	12944	27029	65359	65359		1	9606
TDGEPGPQGWSPR	0	1	Unmodified	1382.6215	0.62149192	2130	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	0	8	0								1									14.126	14.126	2	0.034441	7086	DP690-8	64.64	42.647			1.0329	1.2294	NaN	1	0	Median	4487500	2018800	2468700	13874	2130	12945	27030	65360	65360		1	9606
TDILSLTSQNK	1	0	Unmodified	1218.6456	0.6455814	1594	Q86YH2	ZNF280B	Zinc finger protein 280B	yes	yes	0	0	0	12	0												1					16.621	16.621	2	0.075938	11276	DP690-12	82.261	46.317			NaN	NaN	NaN	0	0	Median	17739000	17739000	0	13875	1594	12946	27031	65361	65361		1	9606
TDITYPAGFMDVISIDK	1	0	Oxidation (M)	1900.9128	0.91283106	986	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	0	11	4							1								1		20.601	20.601	2	0.00048105	15318	DP690-7	110.15	81.526			0.9243	1.0463	1.6914	2	0	Median	26199000	14926000	11272000	13876	986	12947	27032;27033	65362;65363;65364;65365;65366;65367;65368;65369	65369	1504	8	9606
TDITYPAGFMDVISIDKTGENFR	1	1	Oxidation (M)	2605.237	0.23701875	986	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	1	15	0															1		19.977	19.977	3	0.00017071	15084	DP690-15	108.69	90.296			0.80422	0.95309	NaN	1	0	Median	12580000	7112800	5467100	13877	986	12948	27034	65370;65371;65372;65373;65374	65370	1504	5	9606
TDIVSWFGDTR	0	1	Unmodified	1295.6146	0.61461563	2380	Q9UKY1	ZHX1	Zinc fingers and homeoboxes protein 1	yes	yes	0	0	0	11	0											1						20.563	20.563	2	0.016583	17413	DP690-11	73.841	26.654			0.76045	0.90667	NaN	1	0	Median	42598000	24576000	18023000	13878	2380	12949	27035	65375	65375		1	9606
TDKSSASAPDVDDPEAFPALA	1	0	Unmodified	2102.9644	0.96440894	1678	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	13	0													1				18.979	18.979	2	0.00061779	14124	DP690-13	138.55	123.39			0.78351	0.90555	NaN	1	0	Median	61167000	34949000	26218000	13879	1678	12950	27036	65376;65377;65378;65379;65380	65380		5	9606
TDKTDEPVPGASSATAALSPQEK	2	0	Unmodified	2299.1179	0.11794947	2162	Q9HBL0	TNS1	Tensin-1	yes	yes	0	0	1	10	0										1							14.42	14.42	3	0.0017046	8654	DP690-10	68.634	54.429			0.57012	0.71578	NaN	1	0	Median	74338000	43563000	30775000	13880	2162	12951	27037	65381;65382;65383;65384	65382		4	9606
TDKTMTELEIDMNQR	1	1	Oxidation (M)	1839.8343	0.83426316	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	1	1	3	0			1														14.56	14.56	3	0.015122	8102	DP690-3	57.788	34.257			0.71828	0.79663	NaN	1	0	Median	17360000	10130000	7230800	13881	746	12952	27038	65385	65385	1098	1	9606
TDLDDDITALK	1	0	Unmodified	1218.598	0.59796251	1484	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	12	0												1					17.682	17.682	2	0.010494	12725	DP690-12	77.533	61.527			0.97463	1.1624	NaN	1	0	Median	60269000	29412000	30857000	13882	1484	12953	27039	65386	65386		1	9606
TDLEKDIISDTSGDFR	1	1	Unmodified	1810.8585	0.85848731	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	12.4	2.77						1	2		2				1	15			22.35	22.35	2;3	5.7413E-25	13378	DP690-14	241.39	219.53			0.79923	0.85122	21.12	13	0	Median	7300799999.999999	4026399999.9999995	3274299999.9999995	13883	404	12954	27040;27041;27042;27043;27044;27045;27046;27047;27048;27049;27050;27051;27052;27053;27054;27055;27056;27057;27058;27059;27060	65387;65388;65389;65390;65391;65392;65393;65394;65395;65396;65397;65398;65399;65400;65401;65402;65403;65404;65405;65406;65407;65408;65409;65410;65411;65412;65413;65414;65415;65416;65417;65418;65419;65420;65421;65422;65423;65424;65425;65426;65427	65389		41	9606
TDLEKDIISDTSGDFRK	2	1	Unmodified	1938.9535	0.95345032	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	2	12.9	2.75						3	1		1		1		1	22	2	1	20.651	20.651	2;3;4	1.1784E-34	11365	DP690-14	218.34	156.68			0.81352	0.95541	18.433	26	0	Median	54480000000	28914000000	25567000000	13884	404	12955	27061;27062;27063;27064;27065;27066;27067;27068;27069;27070;27071;27072;27073;27074;27075;27076;27077;27078;27079;27080;27081;27082;27083;27084;27085;27086;27087;27088;27089;27090;27091;27092	65428;65429;65430;65431;65432;65433;65434;65435;65436;65437;65438;65439;65440;65441;65442;65443;65444;65445;65446;65447;65448;65449;65450;65451;65452;65453;65454;65455;65456;65457;65458;65459;65460;65461;65462;65463;65464;65465;65466;65467;65468;65469;65470;65471;65472;65473;65474;65475;65476;65477;65478;65479;65480;65481;65482;65483;65484;65485;65486;65487;65488;65489;65490;65491;65492;65493;65494;65495;65496;65497;65498;65499;65500;65501;65502;65503	65479		73	9606
TDLEMQIEGLKEELAYLR	1	1	Oxidation (M)	2166.0878	0.087835314	40	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	1	1	7.5	3.77	1								1	2							23.101	23.101	3	3.1331E-06	20877	DP690-10	156.67	124.11		+	NaN	NaN	NaN	0	0	Median	18336000	18336000	0	13885	40	12956	27093;27094;27095;27096	65504;65505;65506;65507;65508;65509	65506	46	6	9606
TDLFYER	0	1	Unmodified	942.4447	0.44469675	1536	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	0	16	0																1	15.554	15.554	1	0.075877	9149	DP690-16	115.46	63.16			0.84484	0.96068	NaN	1	0	Median	41036000	22228000	18808000	13886	1536	12957	27097	65510	65510		0	9606
TDLIELLAR	0	1	Unmodified	1042.6023	0.60226003	299	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	2	0		1															21.343	21.343	2	0.012354	15026	DP690-2	87.181	61.444			1.0419	1.0662	NaN	1	0	Median	2037500	1012700	1024800	13887	299	12958	27098	65511;65512	65511		2	9606
TDLLIVLSDVEGLFDSPPGSDDAK	1	0	Unmodified	2502.2377	0.23773025	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						27.939	27.939	2	1.6088E-37	25772	DP690-11	226.06	198.41			0.70359	0.85353	NaN	1	0	Median	5751800	3317000	2434800	13888	891	12959	27099	65513;65514;65515;65516;65517;65518	65516		6	9606
TDLLLEPYNK	1	0	Unmodified	1204.634	0.63395408	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	7.33	3.77		1								2							17.284	17.284	2	0.00014897	10359	DP690-2	204.27	126.98			0.92183	0.9372	NaN	1	0	Median	56473000	29834000	26639000	13889	668	12960	27100;27101;27102	65519;65520;65521;65522;65523;65524	65521		6	9606
TDLVPAFQNLMK	1	0	Oxidation (M)	1391.7119	0.71188683	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	1	0	4	0				1													18.508	18.508	2	0.002279	12909	DP690-4	101.46	82.503			1.6448	1.7529	NaN	1	0	Median	56659000	22336000	34323000	13890	624	12961	27103	65525;65526;65527;65528	65527	862	4	9606
TDMDNQIVVSDYAQMDR	0	1	2 Oxidation (M)	2031.8514	0.85136979	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	2	0	8	4				1								1					15.501	15.501	2	2.249E-12	9193	DP690-4	201.08	168.81			1.97	2.2921	NaN	1	0	Median	24289000	14530000	9759100	13891	827	12962	27104;27105	65529;65530;65531;65532;65533;65534;65535	65534	1250;1251	7	9606
TDMDNQIVVSDYAQMDR	0	1	Oxidation (M)	2015.8565	0.85645517	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	1	0	4	0				1													16.596	16.596	2	0.0016642	10627	DP690-4	120.87	96.58			NaN	NaN	NaN	0	0	Median	1996000	0	1996000	13892	827	12962	27106	65536;65537	65536	1250;1251	2	9606
TDMIQALGGVEGILEHTLFK	1	0	Oxidation (M)	2187.1246	0.12455517	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	1	0	9.5	0.5									1	1							23.73	23.73	3	3.2937E-12	21624	DP690-10	167.9	143.23			0.89175	1.1011	0.87193	2	0	Median	47298000	25056000	22242000	13893	1492	12963	27107;27108	65538;65539;65540;65541;65542;65543;65544;65545;65546;65547	65539	2183	10	9606
TDMIQALGGVEGILEHTLFK	1	0	Unmodified	2171.1296	0.12964055	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	9.5	0.5									1	1							26.178	26.178	3	0.00021132	24419	DP690-10	81.639	66.869			0.74803	0.87041	3.2118	2	0	Median	4264600	2175700	2088900	13894	1492	12963	27109;27110	65548;65549;65550;65551;65552;65553	65550		6	9606
TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK	1	0	Unmodified	2980.1953	0.19525838	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	10.7	3.35				1					1			2	1	1			10.249	10.249	4	6.5539E-10	2490	DP690-12	107.59	99.624			0.7491	0.83935	9.8134	4	0	Median	784460000	445090000	339370000	13895	494	12964	27111;27112;27113;27114;27115;27116	65554;65555;65556;65557;65558;65559;65560;65561;65562;65563;65564;65565;65566;65567;65568;65569;65570	65554		17	9606
TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR	1	1	Unmodified	4037.7985	0.79852145	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	1	12	0												2					11.965	11.965	5;6	2.1461999999999998E-19	4829	DP690-12	113.51	105.3			0.58482	0.64095	1.4083	2	0	Median	553840000	324330000	229510000	13896	494	12965	27117;27118	65571;65572;65573;65574;65575;65576;65577;65578	65574		8	9606
TDNELSALVVDNGSGMCK	1	0	Oxidation (M)	1924.8506	0.85064151	1408	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	1	0	14	0														1			21.734	21.734	2	0.021542	17726	DP690-14	65.895	32.856			1.0189	1.2315	NaN	1	0	Median	30043000	14986000	15058000	13897	1408	12966	27119	65579	65579	2142	1	9606
TDPSEQVEGNCEIVNELIAASTQK	1	0	Unmodified	2631.2334	0.23338993	1691	Q8NEM2	SHCBP1	SHC SH2 domain-binding protein 1	yes	yes	0	0	0	11	0											1						22.56	22.56	2	0.0053928	19958	DP690-11	92.307	68.468			NaN	NaN	NaN	0	0	Median	0	0	0	13898	1691	12967	27120	65580	65580		1	9606
TDPSTLTEEEVSK	1	0	Unmodified	1434.6726	0.67258402	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											1						14.361	14.361	2	0.0001518	8439	DP690-11	144.55	118.49			0.85728	0.98528	NaN	1	0	Median	167610000	93558000	74057000	13899	1504	12968	27121	65581;65582;65583;65584	65584		4	9606
TDPTTLTDEEINR	0	1	Unmodified	1503.7053	0.70528113	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	6.75	3.34			1	1					1		1						15.264	15.264	2	4.712E-13	9688	DP690-11	285.27	238.86			0.86874	0.92056	1.6994	2	0	Median	762430000	387810000	374630000	13900	470	12969	27122;27123;27124;27125	65585;65586;65587;65588;65589;65590;65591;65592;65593;65594;65595;65596;65597;65598;65599;65600;65601;65602	65589		18	9606
TDQALAGSLVSSTCGVCGK	1	0	Unmodified	1909.8874	0.88736137	1621	Q8IY33	MICALL2	MICAL-like protein 2	yes	yes	0	0	0	11	0											1						16.519	16.519	2	2.5701E-11	11674	DP690-11	168	168			0.64164	0.7762	NaN	1	0	Median	45077000	29173000	15905000	13901	1621	12970	27126	65603	65603		1	9606
TDRGGDSIGETPTPGASK	1	1	Unmodified	1744.8228	0.8227705	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	10	0										1							10.871	10.871	3	0.00047358	3560	DP690-10	89.604	61.837			0.69084	0.8806	NaN	1	0	Median	63942000	33294000	30648000	13902	263	12971	27127	65604;65605	65605		2	9606
TDRYTIHSQLEHLQSK	1	1	Acetyl (Protein N-term)	1996.9967	0.99665254	2029	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	1	0	1	16	0																1	14.436	14.436	4	9.9734E-05	7830	DP690-16	107.13	107.13			0.7934	0.86159	NaN	1	0	Median	49762000	28851000	20911000	13903	2029	12972	27128	65606;65607	65606		2	9606
TDSCSSAQAQYDTPK	1	0	Unmodified	1657.689	0.68897914	1909	Q96PD2	DCBLD2	Discoidin, CUB and LCCL domain-containing protein 2	yes	yes	0	0	0	5	0					1												11.018	11.018	2	0.00014173	3524	DP690-5	151.13	126.84			NaN	NaN	NaN	0	0	Median	1537500	1537500	0	13904	1909	12973	27129	65608;65609	65608		2	9606
TDSEIYEDAVELQQFFIK	1	0	Unmodified	2174.0419	0.041930979	1567	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	10	0										1							25.21	25.21	2	2.1669E-05	23339	DP690-10	189.33	147.23			NaN	NaN	NaN	0	0	Median	0	0	0	13905	1567	12974	27130	65610	65610		1	9606
TDSLAHCISEDCR	0	1	Unmodified	1562.6453	0.64534018	2496	Q9Y530	OARD1	O-acetyl-ADP-ribose deacetylase 1	yes	yes	0	0	0	16	0																1	12.914	12.914	3	0.0018682	5817	DP690-16	83.047	61.272			0.90707	1.055	NaN	1	0	Median	16798000	9212400	7585300	13906	2496	12975	27131	65611;65612;65613;65614	65612		4	9606
TDTESELDLISR	0	1	Unmodified	1377.6624	0.66235368	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	9.67	2.98			1								5						17.639	17.639	2	3.1412999999999997E-46	13202	DP690-11	261.16	119.68			1.0324	1.1165	NaN	1	0	Median	442260000	94560000	347700000	13907	470	12976	27132;27133;27134;27135;27136;27137	65615;65616;65617;65618;65619;65620;65621;65622;65623;65624	65617		10	9606
TDTLEDLFPTTK	1	0	Unmodified	1379.682	0.68202649	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	5.25	3.34			2	1							1						20.035	20.035	2	0.00062224	16664	DP690-11	140.78	79.088			NaN	NaN	NaN	0	0	Median	25282000	24395000	887320	13908	480	12977	27138;27139;27140;27141	65625;65626;65627;65628	65625		4	9606
TDTYVTDNGDGTYR	0	1	Unmodified	1576.6641	0.66414459	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							13.389	13.389	2	5.1607E-24	7131	DP690-10	304.7	268.38			0.92796	1.1188	8.3397	3	0	Median	169040000	86947000	82095000	13909	1270	12978	27142;27143;27144	65629;65630;65631;65632;65633;65634;65635;65636;65637;65638;65639;65640	65631		12	9606
TDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDEVAVPK	1	1	Unmodified	4308.0386	0.038643101	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	10	0										1							26.151	26.151	4	0.0015865	24532	DP690-10	47.395	41.288			0.59858	0.67506	NaN	1	0	Median	6692400	4101700	2590700	13910	1270	12979	27145	65641;65642;65643	65643		3	9606
TDVAVQIISNIYHNFPEQR	0	1	Unmodified	2243.1335	0.13348037	202	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	10	0										1							22.49	22.49	3	1.2143E-06	20036	DP690-10	130.27	106.4			0.71357	0.8959	NaN	1	0	Median	11863000	6245300	5617500	13911	202	12980	27146	65644;65645	65644		2	9606
TDVVLILELVSGGELFDFLAEK	1	0	Unmodified	2406.2934	0.29339464	173	O43293	DAPK3	Death-associated protein kinase 3	yes	yes	0	0	0	13	0													1				30.122	30.122	2	4.4352E-06	25473	DP690-13	128.06	114.32			NaN	NaN	NaN	0	0	Median	246220	0	246220	13912	173	12981	27147	65646	65646		1	9606
TDYIPLLDVDEK	1	0	Unmodified	1419.7133	0.71332662	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	9.4	4.22		1							1	1	1				1		20.468	20.468	2	9.8273E-05	17244	DP690-10	132.32	100.1			0.7503	0.86823	23.277	5	0	Median	697940000	374590000	323350000	13913	604	12982	27148;27149;27150;27151;27152	65647;65648;65649;65650;65651;65652;65653;65654;65655;65656;65657;65658	65648		12	9606
TDYNASVSVPDSSGPER	0	1	Unmodified	1779.7911	0.79113602	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	10.9	4.38			1	1					1			2	1	1	1	1	14.396	14.396	2	1.7157E-59	7982	DP690-12	355.26	284.71			0.71496	0.807	12.085	8	0	Median	3547399999.9999995	2044099999.9999998	1503299999.9999998	13914	959	12983	27153;27154;27155;27156;27157;27158;27159;27160;27161	65659;65660;65661;65662;65663;65664;65665;65666;65667;65668;65669;65670;65671;65672;65673;65674;65675;65676;65677;65678;65679;65680;65681;65682;65683;65684;65685;65686;65687;65688;65689;65690;65691;65692;65693;65694	65661		36	9606
TDYWLQPEIIVK	1	0	Unmodified	1503.7973	0.79733102	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	13	0													1				20.447	20.447	2	0.00024027	16021	DP690-13	143.4	102.28			0.89206	1.0356	NaN	1	0	Median	20356000	9508300	10848000	13915	229	12984	27162	65695;65696;65697	65696		3	9606
TEADAEKTFEEK	2	0	Unmodified	1396.6358	0.63580458	534	P19338	NCL	Nucleolin	yes	yes	0	0	1	11	0											2						11.687	11.687	2;3	1.595E-10	4687	DP690-11	183.85	130.92			0.88532	0.99044	NaN	1	0	Median	244970000	141850000	103120000	13916	534	12985	27163;27164	65698;65699;65700;65701;65702;65703	65703		6	9606
TEAESWYQTK	1	0	Unmodified	1241.5564	0.55643205	43	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	1	0	1																13.98	13.98	2	0.0095977	5694	DP690-1	109.44	49.321		+	NaN	NaN	NaN	0	0	Median	2976700	2976700	0	13917	43	12986	27165	65704;65705	65705		2	9606
TEALTQAFR	0	1	Unmodified	1035.5349	0.53490874	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	13	0													1				14.87	14.87	2	0.00056018	8510	DP690-13	148.04	96.708			0.83621	0.98412	NaN	1	0	Median	130780000	68016000	62763000	13918	2427	12987	27166	65706;65707	65706		2	9606
TEAPQASPLAKPLQSSSPR	1	1	Unmodified	1964.0327	0.032703697	1621	Q8IY33	MICALL2	MICAL-like protein 2	yes	yes	0	0	1	11	0											1						13.237	13.237	3	0.035624	6716	DP690-11	104.16	67.521			NaN	NaN	NaN	0	0	Median	28899000	28899000	0	13919	1621	12988	27167	65708;65709	65709		2	9606
TECAEPPRDEPPADGALKR	1	2	Unmodified	2107.9957	0.99566626	870	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	2	4	0				1													11.044	11.044	4	0.0024376	3460	DP690-4	78.501	63.479			0.68256	0.72794	NaN	1	0	Median	9725800	4744500	4981300	13920	870	12989	27168	65710	65710		1	9606
TEDFIIDTLELR	0	1	Unmodified	1463.7508	0.75077476	1088	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	11	0											1						22.246	22.246	2	0.00030768	19684	DP690-11	118.28	86.518			0.79844	0.9822	NaN	1	0	Median	13466000	6855100	6611200	13921	1088	12990	27169	65711;65712	65712		2	9606
TEDGGEFEEGASENNAK	1	0	Unmodified	1782.718	0.71803066	187	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	11	0											1						12.496	12.496	2	6.6781E-27	5693	DP690-11	225.33	190.56			NaN	NaN	NaN	0	0	Median	7416000	7416000	0	13922	187	12991	27170	65713	65713		1	9606
TEDPDLPAFYFDPLINPISHR	0	1	Unmodified	2456.2012	0.20122559	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	9.33	0.471									2	1							22.625	22.625	3	2.7174E-10	17894	DP690-9	154.46	134.76			0.52377	0.65413	6.0671	2	0	Median	82210000	49450000	32760000	13923	1492	12992	27171;27172;27173	65714;65715;65716;65717;65718;65719;65720;65721	65718		8	9606
TEEALQLYNQIIK	1	0	Unmodified	1561.8352	0.83517309	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	9	3.56				1							1	1					20.128	20.128	2	1.4277E-10	16804	DP690-11	271.26	193.73			0.90176	1.011	NaN	1	0	Median	243330000	130110000	113230000	13924	288	12993	27174;27175;27176	65722;65723;65724;65725;65726;65727;65728	65724		7	9606
TEEGEIDYSAEEGENRR	0	2	Unmodified	1982.8454	0.84535644	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	1	12	0												2					12.819	12.819	2;3	4.7622E-12	5944	DP690-12	196.24	155.72			0.89282	1.0123	34.429	2	0	Median	162810000	93321000	69491000	13925	1750	12994	27177;27178	65729;65730;65731;65732	65731		4	9606
TEEGLGFNIMGGK	1	0	Oxidation (M)	1367.6391	0.63911582	2221	Q9NUP9	LIN7C	Protein lin-7 homolog C	yes	yes	0	1	0	15	0															1		16.473	16.473	2	0.0018112	10737	DP690-15	101.97	81.984			0.90374	1.0541	NaN	1	0	Median	39908000	20192000	19716000	13926	2221	12995	27179	65733;65734	65734	2702	2	9606
TEEGPTLSYGR	0	1	Unmodified	1208.5673	0.56733108	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											1						13.648	13.648	2	0.00015914	7493	DP690-11	140.83	99.183			0.55599	0.66131	NaN	1	0	Median	124460000	73565000	50893000	13927	735	12996	27180	65735	65735		1	9606
TEELNKEVASNSELVQSSR	1	1	Unmodified	2119.0393	0.039305217	40	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	1	12.3	5.19					1											2	14.126	14.126	2;3	1.7681E-50	7439	DP690-16	261.17	185.95		+	NaN	NaN	NaN	0	0	Median	41224000	41224000	0	13928	40	12997	27181;27182;27183	65736;65737;65738;65739;65740	65738		5	9606
TEEMQPTVEANQAAK	1	0	Oxidation (M)	1661.7567	0.75666477	1557	Q7Z7G8	VPS13B	Vacuolar protein sorting-associated protein 13B	yes	yes	0	1	0	9	0									1								10.73	10.73	2	0.011289	3052	DP690-9	113.95	73.219			NaN	NaN	NaN	0	0	Median	0	0	0	13929	1557	12998	27184	65741	65741	2235	1	9606
TEGDEEAEEEQEENLEASGDYK	1	0	Unmodified	2499.9885	0.98851102	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	8	4				1								1					15.482	15.482	2	1.4549000000000001E-146	9697	DP690-12	422.25	422.25			1.4461	1.6476	63.605	2	0	Median	61908000	28656000	33252000	13930	479	12999	27185;27186	65742;65743;65744;65745;65746;65747;65748;65749	65743		8	9606
TEGTQEADQYADEK	1	0	Unmodified	1583.6587	0.65872487	1100	Q02952	AKAP12	A-kinase anchor protein 12	yes	yes	0	0	0	2	0		4															11.995	11.995	2	0.0031414	4198	DP690-2	151.79	104.97			NaN	NaN	NaN	0	0	Median	1152000	0	1152000	13931	1100	13000	27187;27188;27189;27190	65750;65751;65752;65753;65754	65753		5	9606
TEIIILATR	0	1	Unmodified	1028.623	0.62299547	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	15.5	0.5															1	1	17.359	17.359	2	0.0011462	11555	DP690-16	76.679	50.785			0.9839	1.0932	16.508	2	0	Median	298780000	155440000	143340000	13932	569	13001	27191;27192	65755;65756;65757;65758;65759	65759		5	9606
TEILPPFFK	1	0	Unmodified	1090.6063	0.60628277	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	10.5	0.5										1	1						20.245	20.245	2	0.0058193	17091	DP690-10	96.492	69.238			0.79058	0.94958	NaN	1	0	Median	241430000	146920000	94508000	13933	263	13002	27193;27194	65760;65761;65762;65763;65764	65761		5	9606
TEIPFEFPLHLK	1	0	Unmodified	1469.7919	0.79185171	125	O14972	DSCR3	Down syndrome critical region protein 3	yes	yes	0	0	0	14	0														1			20.162	20.162	3	0.00057576	15827	DP690-14	98.156	63.406			0.67257	0.81771	NaN	1	0	Median	36758000	22479000	14279000	13934	125	13003	27195	65765;65766;65767;65768	65765		4	9606
TEIVFTGEKEQLAQAVAR	1	1	Unmodified	1989.0531	0.053104788	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	1	10	0										1							16.516	16.516	3	2.1977E-13	11703	DP690-10	184.48	169.36			0.72802	0.83337	NaN	1	0	Median	314290000	179540000	134750000	13935	1071	13004	27196	65769;65770;65771;65772;65773	65771		5	9606
TELAEPIAIRPTSETVMYPAYAK	1	1	Oxidation (M)	2566.2989	0.29889072	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	1	1	2	0		1															17.246	17.246	3	0.0013057	10379	DP690-2	70.414	52.665			0.85555	0.8422	NaN	1	0	Median	8186800	5169100	3017700	13936	408	13005	27197	65774;65775;65776	65774	450	3	9606
TELEETTAEAEEEIQALTAHRDEIQR	0	2	Unmodified	3011.432	0.4319664	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	1	10	0										1							20.544	20.544	4	4.435E-05	17534	DP690-10	111.57	111.57			0.76188	0.90744	NaN	1	0	Median	34469000	17268000	17201000	13937	106	13006	27198	65777;65778;65779;65780	65779		4	9606
TELGSQTPESSR	0	1	Unmodified	1290.6052	0.60517315	2149	Q9H9L4	KANSL2	KAT8 regulatory NSL complex subunit 2	yes	yes	0	0	0	12	0												1					10.695	10.695	2	0.00033535	3143	DP690-12	152.54	57.69			0.84083	1.0047	NaN	1	0	Median	29284000	16384000	12901000	13938	2149	13007	27199	65781;65782	65781		2	9606
TELISVSEVHPSR	0	1	Unmodified	1452.7573	0.75725712	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	3	0			2														14.334	14.334	2;3	1.9372E-05	7710	DP690-3	153.74	116.13			0.8877	0.98887	11.512	2	0	Median	81647000	42988000	38659000	13939	724	13008	27200;27201	65783;65784;65785;65786;65787;65788;65789;65790;65791;65792	65784		10	9606
TEMDWVLK	1	0	Unmodified	1020.495	0.49501776	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	13	0													1				18.289	18.289	2	0.056865	13188	DP690-13	111.04	54.489			0.92858	1.014	NaN	1	0	Median	337040000	175730000	161310000	13940	856	13009	27202	65793	65793		0	9606
TEMEDLMSSK	1	0	Oxidation (M)	1185.4893	0.48934004	668	P35579	MYH9	Myosin-9	yes	yes	0	1	0	2	0		1															12.552	12.552	2	0.072719	4801	DP690-2	66.299	50.918			1.1754	1.1733	NaN	1	0	Median	3956500	1664900	2291500	13941	668	13010	27203	65794;65795	65795	968;969	2	9606
TEMEDLMSSKDDVGK	2	0	2 Oxidation (M)	1715.723	0.72298138	668	P35579	MYH9	Myosin-9	yes	yes	0	2	1	4.33	3.3		2							1								10.63	10.63	2;3	6.2082E-06	2752	DP690-2	163.62	152.03			1.1128	1.1552	20.13	3	0	Median	103530000	47101000	56425000	13942	668	13011	27204;27205;27206	65796;65797;65798;65799;65800;65801	65797	968;969	6	9606
TEMEDLMSSKDDVGK	2	0	Oxidation (M)	1699.7281	0.72806676	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	2	0		1															12.825	12.825	3	0.00035614	4994	DP690-2	98.676	82.857			0.89659	0.93077	NaN	1	0	Median	15583000	8644100	6938500	13943	668	13011	27207	65802;65803;65804;65805;65806	65803	968;969	5	9606
TEMENEFVLIK	1	0	Unmodified	1351.6694	0.66935331	38	CON__P05787;P05787;CON__H-INV:HIT000016045	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	13	0													2				18.821	18.821	2	0.0045012	13855	DP690-13	121.6	43.269		+	NaN	NaN	NaN	0	0	Median	0	0	0	13944	38	13012	27208;27209	65807;65808	65807		2	9606
TEMQDNTYPEILR	0	1	Unmodified	1608.7454	0.7453718	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	11	0											1						17.207	17.207	2	2.7072E-05	12642	DP690-11	175.93	121.39			0.98744	1.178	NaN	1	0	Median	44106000	22857000	21250000	13945	161	13013	27210	65809;65810;65811;65812	65811		4	9606
TENELLQMFYR	0	1	Unmodified	1442.6864	0.68640036	1792	Q92828	CORO2A	Coronin-2A	yes	yes	0	0	0	12	0												1					21.476	21.476	2	0.00019308	17749	DP690-12	145.72	99.261			0.87611	1.0661	NaN	1	0	Median	12294000	6557900	5735700	13946	1792	13014	27211	65813;65814	65813		2	9606
TENLLGSYFPK	1	0	Unmodified	1267.6449	0.64485312	1124	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	7	0							1										19.136	19.136	2	0.00019093	13427	DP690-7	145.46	118.16			0.74275	0.78778	NaN	1	0	Median	135180000	77139000	58041000	13947	1124	13015	27212	65815;65816;65817;65818	65818		4	9606
TENPVIMGLSSQNGQLR	0	1	Unmodified	1842.9258	0.92579578	589	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	12	0												1					17.89	17.89	2	0.033331	13084	DP690-12	88.092	40.088			NaN	NaN	NaN	0	0	Median	4199700	4199700	0	13948	589	13016	27213	65819;65820	65820		2	9606
TEPGGSQLVEQFTQQDLEDGR	0	1	Unmodified	2333.0771	0.077147287	1505	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	14	0														1			19.501	19.501	2	5.8969E-23	14958	DP690-14	198.87	198.87			0.73743	0.89582	NaN	1	0	Median	20407000	11647000	8760100	13949	1505	13017	27214	65821;65822;65823;65824	65821		4	9606
TEPLAANPFAASFAHLLNPAPPAR	0	1	Unmodified	2472.2914	0.291378	2381	Q9UKZ1	CNOT11	CCR4-NOT transcription complex subunit 11	yes	yes	0	0	0	13	0													1				22.21	22.21	3	0.0012719	18123	DP690-13	67.563	67.563			0.73596	0.87859	NaN	1	0	Median	6468300	4204900	2263500	13950	2381	13018	27215	65825	65825		1	9606
TEPPQGEDQVDICNLR	0	1	Unmodified	1869.8527	0.85269042	8	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	11	0											2						16.052	16.052	2	7.5228E-06	10825	DP690-11	147.58	131.2			0.77193	0.9216	NaN	1	0	Median	32671000	19785000	12886000	13951	8	13019	27216;27217	65826;65827;65828;65829;65830	65826		5	9606
TEPTAQQNLALQLAEK	1	0	Unmodified	1753.921	0.92102798	18	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	11	0											1						17.055	17.055	2	5.1221E-07	12386	DP690-11	158.34	158.34			0.82613	1.0009	NaN	1	0	Median	68229000	36765000	31464000	13952	18	13020	27218	65831;65832;65833;65834	65832		4	9606
TEQAISFAK	1	0	Acetyl (Protein N-term)	1035.5237	0.52367535	473	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	1	0	0	10	0										1							17.625	17.625	1	1.4717E-06	13197	DP690-10	127.4	85.289			1.0161	1.2533	NaN	1	0	Median	94730000	45886000	48845000	13953	473	13021	27219	65835	65835		1	9606
TEQDLALGTDAEGQK	1	0	Unmodified	1574.7424	0.74239491	68	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	12	0												1					13.943	13.943	2	8.1318E-06	7482	DP690-12	174.21	149.74			0.97247	1.1597	NaN	1	0	Median	59188000	28534000	30654000	13954	68	13022	27220	65836;65837;65838	65836		3	9606
TEQEEDEELLTESSK	1	0	Unmodified	1765.7741	0.77414855	198	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	11	0											2						15.491	15.491	2	8.8861E-36	10094	DP690-11	242.97	203.03			NaN	NaN	NaN	0	0	Median	19121000	19121000	0	13955	198	13023	27221;27222	65839;65840;65841	65839		3	9606
TEQGGAHFSVSSLAEGSVTSVGSVNPAENFR	0	1	Unmodified	3120.4748	0.47483427	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	11	0											2						19.158	19.158	3	1.4802E-07	15519	DP690-11	98.085	66.266			NaN	NaN	NaN	0	0	Median	33746000	20590000	13156000	13956	480	13024	27223;27224	65842;65843;65844	65844		3	9606
TEQLQAVLCSTMEK	1	0	Oxidation (M)	1652.775	0.77495737	2014	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	1	0	13	0													1				16.391	16.391	2	0.00019844	10708	DP690-13	147.24	98.263			NaN	NaN	NaN	0	0	Median	20892000	0	20892000	13957	2014	13025	27225	65845;65846	65845	2549	2	9606
TEQSVALLEQK	1	0	Unmodified	1244.6612	0.66123147	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								14.599	14.599	2	0.00068766	7898	DP690-9	133.99	88.971			0.61102	0.7822	NaN	1	0	Median	13272000	7161800	6109800	13958	2411	13026	27226	65847;65848;65849	65847		3	9606
TERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTR	0	2	Oxidation (M)	3588.7115	0.7114525	1199	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	1	1	14	0														1			15.782	15.782	4	1.7936E-11	9972	DP690-14	129.53	115.17			0.74727	0.87817	NaN	1	0	Median	47640000	23255000	24384000	13959	1199	13027	27227	65850;65851	65850	1850	2	9606
TESAVSQMQSVIELGR	0	1	Unmodified	1733.8618	0.86179854	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	10	0										1							19.938	19.938	2	0.019282	16649	DP690-10	94.547	45.806			NaN	NaN	NaN	0	0	Median	20342000	20342000	0	13960	721	13028	27228	65852	65852		1	9606
TESAVSQMQSVIELGR	0	1	Oxidation (M)	1749.8567	0.85671317	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	3	0			1														15.861	15.861	2	5.2386E-07	9764	DP690-3	167.44	135.6			1.1746	1.3379	NaN	1	0	Median	12397000	5543500	6853200	13961	721	13028	27229	65853;65854;65855;65856	65853	1060	4	9606
TESEPGQQPMELENK	1	0	Oxidation (M)	1731.7621	0.76214408	1533	Q7L8L6	FASTKD5	FAST kinase domain-containing protein 5	yes	yes	0	1	0	4	0				2													11.669	11.669	2	0.031044	4149	DP690-4	87.184	30.959			NaN	NaN	NaN	0	0	Median	919770	919770	0	13962	1533	13029	27230;27231	65857;65858	65857	2215	2	9606
TESLIQQYEAISLLNSER	0	1	Unmodified	2093.0641	0.064063405	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9.5	0.5									1	1							21.65	21.65	2	1.6904000000000002E-29	16778	DP690-9	234.52	211.05			0.76818	0.96309	5.1968	2	0	Median	14015000	7871900	6143400	13963	2411	13030	27232;27233	65859;65860;65861;65862;65863;65864;65865;65866	65865		8	9606
TESPATAAETASEELDNR	0	1	Unmodified	1890.8443	0.8442938	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	10	0										1							17.191	17.191	2	6.0703E-31	12725	DP690-10	251.91	237.1			0.76085	0.95292	NaN	1	0	Median	48168000	23735000	24433000	13964	2215	13031	27234	65867;65868	65867		2	9606
TETPPPLASLNVSK	1	0	Unmodified	1452.7824	0.78240924	1388	Q3MHD2	LSM12	Protein LSM12 homolog	yes	yes	0	0	0	15	0															1		16.647	16.647	2	0.0031957	11103	DP690-15	87.641	69.416			0.70387	0.81888	NaN	1	0	Median	42506000	24729000	17778000	13965	1388	13032	27235	65869;65870;65871;65872	65871		4	9606
TETSETEITTTEIIK	1	0	Unmodified	1694.8462	0.84619128	1162	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	9	0									2								16.297	16.297	2	0.0053267	10260	DP690-9	113.77	72.55			NaN	NaN	NaN	0	0	Median	3407100	0	3407100	13966	1162	13033	27236;27237	65873;65874	65873		2	9606
TETVTSFR	0	1	Unmodified	939.46616	0.46616048	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							12.649	12.649	2	7.7998E-13	5204	DP690-9	225.8	160.54			0.87069	0.95683	7.9808	2	0	Median	709060000	389930000	319130000	13967	1046	13034	27238;27239	65875;65876	65876		0	9606
TEVIQLEDTLAQVR	0	1	Unmodified	1613.8625	0.86245047	238;1448	O75150;Q5VTR2	RNF40;RNF20	E3 ubiquitin-protein ligase BRE1B;E3 ubiquitin-protein ligase BRE1A	no	no	0	0	0	11	0											1						19.975	19.975	2	7.1288E-05	16532	DP690-11	184.36	121.18			0.98692	1.1804	NaN	1	0	Median	51028000	25792000	25236000	13968	238;1448	13035	27240	65877;65878;65879	65877		3	9606
TEVLMENFR	0	1	Unmodified	1137.5488	0.54884425	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	13	0													1				16.747	16.747	2	0.021445	11201	DP690-13	101.72	72.055			NaN	NaN	NaN	0	0	Median	9276400	0	9276400	13969	2431	13036	27241	65880	65880		1	9606
TEVNGFDPLFNAITGLNGSGK	1	0	Unmodified	2150.0644	0.064397756	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	10	0										1							23.253	23.253	2	2.3569999999999998E-23	21075	DP690-10	206.49	162.12			NaN	NaN	NaN	0	0	Median	5466300	5466300	0	13970	317	13037	27242	65881	65881		1	9606
TEVNSGFFYK	1	0	Unmodified	1190.5608	0.56078914	702	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	yes	no	0	0	0	8	4				1								1					16.148	16.148	2	0.00015687	9986	DP690-4	134.48	100.29			0.97216	1.1067	44.009	2	0	Median	60220000	29589000	30631000	13971	702	13038	27243;27244	65882;65883;65884	65883		3	9606
TEVNYTQLVDLHAR	0	1	Unmodified	1657.8424	0.84238373	686	P36969	GPX4	Phospholipid hydroperoxide glutathione peroxidase, mitochondrial	yes	yes	0	0	0	16	0																1	16.886	16.886	3	0.0020388	10952	DP690-16	73.022	62.078			0.83814	0.97478	NaN	1	0	Median	14280000	7755400	6524600	13972	686	13039	27245	65885;65886	65886		2	9606
TEVVSLLLDR	0	1	Unmodified	1143.6499	0.6499385	242	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	2	0		1															19.718	19.718	2	0.015356	13194	DP690-2	76.17	53.43			1.0326	1.0567	NaN	1	0	Median	1633200	794040	839200	13973	242	13040	27246	65887;65888	65887		2	9606
TEYDAVAEK	1	0	Unmodified	1024.4713	0.47130543	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	2.5	0.5		1	1														11.424	11.424	2	0.021308	3632	DP690-2	78.149	32.197			1.0385	1.0628	0.54604	2	0	Median	10179000	4980500	5198300	13974	2215	13041	27247;27248	65889;65890	65889		2	9606
TEYLSNADER	0	1	Unmodified	1196.5309	0.53094558	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								12.331	12.331	2	4.1412E-05	4877	DP690-9	229.44	190.63			0.88318	1.0527	NaN	1	0	Median	45183000	24698000	20485000	13975	1264	13042	27249;27250	65891;65892;65893;65894;65895	65895		5	9606
TFAAQSLVQLLSK	1	0	Unmodified	1404.7977	0.79766537	731	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	10	0										1							21.926	21.926	2	0.00015764	19390	DP690-10	152.07	134.6			0.82018	1.0082	NaN	1	0	Median	41725000	22838000	18888000	13976	731	13043	27251	65896;65897;65898;65899	65897		4	9606
TFAGNTPLHLAAGLGYPTLTR	0	1	Unmodified	2170.1535	0.15348753	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	3	0			1														19.337	19.337	3	0.0017698	14329	DP690-3	70.072	70.072			0.8914	1.0181	NaN	1	0	Median	24335000	12500000	11836000	13977	1076	13044	27252	65900	65900		1	9606
TFCQLILDPIFK	1	0	Unmodified	1493.7952	0.79522253	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	7.67	3.4			1						1		1						22.666	22.666	2	0.00011939	20130	DP690-11	175.33	147.24			0.89951	0.99452	18.896	3	0	Plateau	214160000	111570000	102580000	13978	483	13045	27253;27254;27255	65901;65902;65903;65904;65905;65906;65907;65908;65909;65910	65904		10	9606
TFDAQIVIIEHK	1	0	Unmodified	1412.7664	0.76636524	497	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	3	0			1														16.656	16.656	3	0.014746	10848	DP690-3	55.899	28.801			1.0559	1.1303	NaN	1	0	Median	14725000	7733400	6991200	13979	497	13046	27256	65911;65912	65912		2	9606
TFDEIASGFR	0	1	Unmodified	1141.5404	0.54038805	464	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	yes	yes	0	0	0	9.5	0.5									1	1							17.625	17.625	2	6.4181E-05	13303	DP690-10	167.23	123.11			0.85851	1.0155	6.3976	2	0	Median	341100000	183110000	157990000	13980	464	13047	27257;27258	65913;65914;65915;65916;65917;65918;65919;65920	65914		8	9606
TFDEKELELIICGLGK	2	0	Unmodified	1863.9652	0.96520098	2156	Q9HAU4	SMURF2	E3 ubiquitin-protein ligase SMURF2	yes	yes	0	0	1	11	0											1						22.602	22.602	3	0.0012173	19940	DP690-11	82.121	68.955			2.2368	2.6972	NaN	1	0	Median	17773000	6337700	11435000	13981	2156	13048	27259	65921;65922	65921		2	9606
TFDHYCEYR	0	1	Unmodified	1289.5135	0.51352137	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								12.524	12.524	3	0.076136	5236	DP690-9	56.013	42.422			NaN	NaN	NaN	0	0	Median	0	0	0	13982	1264	13049	27260	65923	65923		1	9606
TFEEAAAQLLESSVQNLFK	1	0	Unmodified	2124.0739	0.07389981	2375	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	11	0											1						27.986	27.986	2	1.3785E-22	25760	DP690-11	220.99	186.6			1.1314	1.3137	NaN	1	0	Median	1908900	953360	955550	13983	2375	13050	27261	65924;65925;65926	65925		3	9606
TFEECQQNLMK	1	0	Oxidation (M)	1442.617	0.61700017	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	1	0	9	0									1								12.44	12.44	2	0.018005	5137	DP690-9	76.827	76.827			0.74141	0.93136	NaN	1	0	Median	5907300	3328600	2578700	13984	808	13051	27262	65927;65928;65929;65930	65928	1218	4	9606
TFEHVTSEIGAEEAEEVGVEHLLR	0	1	Unmodified	2680.298	0.2980391	839	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	6	0						1											19.198	19.198	4	0.00028	13161	DP690-6	75.797	59.498			0.73778	0.83805	NaN	1	0	Median	4454200	2553900	1900300	13985	839	13052	27263	65931;65932;65933	65932		3	9606
TFEMSDFIVDTR	0	1	Oxidation (M)	1475.6602	0.66024519	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	7.33	3.77		1								2							18.708	18.708	2	0.00032319	13410	DP690-10	143.89	110.85			0.78034	0.81285	17.336	3	0	Median	190980000	108640000	82339000	13986	250	13053	27264;27265;27266	65934;65935;65936;65937;65938;65939;65940	65937	250	7	9606
TFEMSDFIVDTR	0	1	Unmodified	1459.6653	0.66533057	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10.5	0.5										1	1						20.732	20.732	2	4.5041E-05	17672	DP690-10	145.99	102.34			0.87527	1.0635	5.5572	2	0	Median	172500000	94247000	78250000	13987	250	13053	27267;27268	65941;65942;65943;65944;65945;65946;65947	65942		7	9606
TFEQLHSTIGHQALEDILPFLLK	1	0	Unmodified	2649.4166	0.41663809	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							22.71	22.71	4	0.05813	20246	DP690-10	32.702	26.152			1.5548	1.885	NaN	1	0	Median	13806000	5581600	8224700	13988	1782	13054	27269	65948	65948		1	9606
TFFEELAVEDKQAGEEEK	2	0	Unmodified	2097.9742	0.97424534	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	1	11	0											1						17.76	17.76	3	0.0016474	13376	DP690-11	108.96	77.378			NaN	NaN	NaN	0	0	Median	68510000	68510000	0	13989	1687	13055	27270	65949	65949		1	9606
TFFENVNLCDHR	0	1	Unmodified	1550.6936	0.693611	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2.5	0.5		1	1														16.362	16.362	3	0.00034612	9352	DP690-2	105.25	85.242			0.96959	1.0128	NaN	1	0	Median	12815000	6440500	6374600	13990	2418	13056	27271;27272	65950;65951;65952;65953;65954	65951		5	9606
TFFSFPAVVAPFK	1	0	Unmodified	1456.7755	0.77547336	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3	0			1														22.78	22.78	2	0.0003342	18293	DP690-3	112.75	86.631			0.79444	0.83022	NaN	1	0	Median	57206000	32712000	24494000	13991	720	13057	27273	65955;65956;65957;65958	65956		4	9606
TFGENYVQELLEK	1	0	Unmodified	1568.7722	0.77223848	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	7	0							1										21.317	21.317	2	6.9135E-05	16127	DP690-7	174.57	150.23			0.68466	0.72325	NaN	1	0	Median	183680000	99358000	84319000	13992	296	13058	27274	65959;65960;65961	65961		3	9606
TFHFNTVEEVHSR	0	1	Unmodified	1601.7587	0.7586541	628	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	6	0						1											13.283	13.283	3	2.8753E-11	6063	DP690-6	198.29	166.64			0.75917	0.84764	NaN	1	0	Median	28077000	16534000	11543000	13993	628	13059	27275	65962;65963	65963		2	9606
TFHIFYYLLSGAGEHLK	1	0	Unmodified	1995.0254	0.025433475	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		2															20.776	20.776	3;4	0.00020835	14356	DP690-2	101.08	87.172			1.2378	1.2447	10.747	2	0	Median	17046000	7280900	9764700	13994	668	13060	27276;27277	65964;65965;65966;65967;65968	65966		5	9606
TFIAIKPDGVQR	1	1	Unmodified	1343.7561	0.75613491	501;562	P15531;P22392	NME1;NME2	Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B	no	no	0	0	1	10.7	3.77								2								1	14.172	14.172	2;3	0.00010933	7143	DP690-8	133.91	121.08			0.85323	0.99207	15.892	3	0	Median	253150000	140710000	112440000	13995	501;562	13061	27278;27279;27280	65969;65970;65971;65972;65973;65974;65975;65976;65977	65972		9	9606
TFIGPGGNMPGYLRPETAQGIFLNFK	1	1	Oxidation (M)	2840.432	0.43197058	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	1	1	3	0			1														20.418	20.418	3	0.00016244	15688	DP690-3	91.128	64.685			0.61704	0.68435	NaN	1	0	Median	43937000	25604000	18333000	13996	720	13062	27281	65978;65979;65980;65981	65980	1055	4	9606
TFITIGDR	0	1	Unmodified	921.49198	0.4919813	755	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	0	0	6	0						1											15.864	15.864	2	0.069457	9123	DP690-6	107.59	35.879			0.99648	1.1233	NaN	1	0	Median	21027000	10274000	10754000	13997	755	13063	27282	65982	65982		0	9606
TFITQQGIK	1	0	Unmodified	1034.576	0.57604528	1836	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	13	0													1				14.093	14.093	2	0.030143	7528	DP690-13	73.665	53.524			0.69755	0.80603	NaN	1	0	Median	63614000	38473000	25141000	13998	1836	13064	27283	65983;65984	65984		2	9606
TFLEFYEEK	1	0	Unmodified	1204.5652	0.56520582	162	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	8	4				1								1					18.738	18.738	2	0.0046376	14234	DP690-12	101.25	72.335			0.96	1.0925	13.694	2	0	Median	66203000	31685000	34518000	13999	162	13065	27284;27285	65985;65986;65987;65988;65989;65990;65991	65987		7	9606
TFNCGVGAVLVVSK	1	0	Unmodified	1449.765	0.76498503	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	3	0			1														17.676	17.676	2	0.00032087	12168	DP690-3	110.8	91.345			0.90732	0.95785	NaN	1	0	Median	38665000	19977000	18688000	14000	559	13066	27286	65992;65993;65994;65995	65992		4	9606
TFNLPLLMLGGGGYTIR	0	1	Oxidation (M)	1837.976	0.97604044	1788	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	1	0	12	0												1					22.912	22.912	2	0.00023353	19289	DP690-12	119.17	102.15			0.73138	0.88623	NaN	1	0	Median	14826000	8397900	6428200	14001	1788	13067	27287	65996;65997;65998;65999	65997	2355	4	9606
TFNPGAGLPTDK	1	0	Unmodified	1216.6088	0.60880197	438	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	11	4							1								1		14.972	14.972	2	0.00026976	8200	DP690-7	119.53	95.307			0.67931	0.74005	18.291	2	0	Median	224130000	131580000	92554000	14002	438	13068	27288;27289	66000;66001;66002;66003;66004;66005;66006;66007	66006		8	9606
TFNPGAGLPTDKK	2	0	Unmodified	1344.7038	0.70376498	438	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	1	11	4							2								2		13.115	13.115	2;3	8.3185E-05	6013	DP690-7	123.95	103.52			0.72208	0.79862	34.13	4	0	Median	133260000	80560000	52697000	14003	438	13069	27290;27291;27292;27293	66008;66009;66010;66011;66012;66013;66014;66015;66016;66017;66018;66019	66016		12	9606
TFNQVEIKPEMIGHYLGEFSITYKPVK	3	0	Oxidation (M)	3183.6315	0.63145825	993	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	1	2	13.3	3.77								1								2	19.424	19.424	4;5	5.4585E-05	14012	DP690-16	95.209	80.137			0.71741	0.83564	3.5497	3	0	Median	253800000	136950000	116860000	14004	993	13070	27294;27295;27296	66020;66021;66022;66023;66024;66025;66026;66027;66028;66029;66030	66024	1517	11	9606
TFNTSTGGLLLPSDTK	1	0	Unmodified	1650.8465	0.84646606	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	8	4				1								1					17.803	17.803	2	1.1373E-06	12922	DP690-12	143.46	123.14			1.4098	1.6109	89.206	2	0	Median	43641000	22320000	21321000	14005	479	13071	27297;27298	66031;66032;66033;66034;66035;66036	66032		6	9606
TFNTSTGGLLLPSDTKR	1	1	Unmodified	1806.9476	0.94757708	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	8	4				2								2					15.966	15.966	2;3	0.00023314	9804	DP690-4	95.197	67.934			1.4994	1.8546	67.606	3	0	Median	187330000	89889000	97444000	14006	479	13072	27299;27300;27301;27302	66037;66038;66039;66040;66041	66040		5	9606
TFPFLEGLR	0	1	Unmodified	1078.5811	0.58113065	570	P23497;Q9H930	SP100;SP140L	Nuclear autoantigen Sp-100;Nuclear body protein SP140-like protein	yes	no	0	0	0	12	0												1					20.95	20.95	2	0.026451	17088	DP690-12	98.458	54.689			NaN	NaN	NaN	0	0	Median	10092000	10092000	0	14007	570	13073	27303	66042	66042		1	9606
TFQMAEYLK	1	0	Unmodified	1129.5478	0.54778161	663	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	14	0														1			17.865	17.865	2	0.034742	12866	DP690-14	72.23	32.584			0.86114	1.0467	NaN	1	0	Median	52045000	28262000	23783000	14008	663	13074	27304	66043	66043		1	9606
TFSFAIPLIEK	1	0	Unmodified	1264.7067	0.7067251	2195	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	11	0											3						21.716	21.716	2	0.018627	18976	DP690-11	99.788	70.83			NaN	NaN	NaN	0	0	Median	23081000	0	23081000	14009	2195	13075	27305;27306;27307	66044;66045;66046;66047	66045		4	9606
TFSHELSDFGLESTAGEIPVVAIR	0	1	Unmodified	2574.2966	0.29658254	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	12	0												1					21.053	21.053	3	0.016131	17187	DP690-12	67.895	42.745			NaN	NaN	NaN	0	0	Median	2608400	0	2608400	14010	623	13076	27308	66048	66048		1	9606
TFSLTEVR	0	1	Unmodified	951.50255	0.50254598	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										3							16.014	16.014	2	9.5276E-07	11010	DP690-10	172.03	129.92			NaN	NaN	NaN	0	0	Median	122060000	122060000	0	14011	311	13077	27309;27310;27311	66049;66050;66051;66052	66049		4	9606
TFSSIPVSR	0	1	Unmodified	992.5291	0.52909508	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								14.038	14.038	2	0.0089636	7191	DP690-9	90.601	63.908			0.97759	1.1806	NaN	1	0	Median	32380000	16886000	15494000	14012	1264	13078	27312	66053;66054	66054		2	9606
TFSVWYVPEVTGTHK	1	0	Unmodified	1749.8726	0.87262123	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.29	3.1		1							1	2	2	1					18.77	18.77	2;3	2.3417E-10	14901	DP690-10	168	149.64			0.80265	0.89076	11.189	6	0	Median	2253000000	1244100000	1008999999.9999999	14013	549	13079	27313;27314;27315;27316;27317;27318;27319	66055;66056;66057;66058;66059;66060;66061;66062;66063;66064;66065;66066;66067;66068;66069;66070;66071;66072;66073;66074;66075;66076;66077;66078;66079	66056		25	9606
TFSWASVTSK	1	0	Unmodified	1112.5502	0.55022446	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	12	0												1					17.079	17.079	2	9.2947E-05	11921	DP690-12	150.27	107.4			1.0431	1.1777	NaN	1	0	Median	166490000	75662000	90827000	14014	1196	13080	27320	66080;66081;66082;66083;66084;66085	66082		6	9606
TFSYAGFEMQPK	1	0	Oxidation (M)	1420.6333	0.63330216	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	0	4	0				1													16.343	16.343	2	0.064061	10509	DP690-4	64.374	44.715			1.8617	2.0249	NaN	1	0	Median	22428000	8219600	14209000	14015	1959	13081	27321	66086	66086		1	9606
TFTDCFNCLPIAAIVDEK	1	0	Unmodified	2112.986	0.98601278	963;683;964	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	14	0														1			22.993	22.993	2	1.8437E-17	19281	DP690-14	261.45	243.25			0.75326	0.91084	NaN	1	0	Median	30540000	16723000	13816000	14016	963;964;683	13082	27322	66087;66088;66089;66090;66091;66092;66093	66088		7	9606
TFTEMDSHEEK	1	0	Unmodified	1352.5554	0.55544577	775	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	12	0												2					10.944	10.944	2;3	0.00010139	3457	DP690-12	135.55	113.77			0.8875	1.0719	12.403	2	0	Median	37013000	18744000	18269000	14017	775	13083	27323;27324	66094;66095;66096;66097	66095		4	9606
TFTMEGGPGGDPQLEGLIPR	0	1	Oxidation (M)	2086.9994	0.99935466	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	1	0	11	0											1						19.575	19.575	2	0.056956	16023	DP690-11	73.834	22.699			NaN	NaN	NaN	0	0	Median	8129600	0	8129600	14018	2024	13084	27325	66098	66098		1	9606
TFTMEGGPGGDPQLEGLIPR	0	1	Unmodified	2071.0044	0.004440036	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11	0											1						20.687	20.687	2	5.2274E-06	17526	DP690-11	130.72	98.188			NaN	NaN	NaN	0	0	Median	13161000	13161000	0	14019	2024	13084	27326	66099;66100	66099		2	9606
TFVLEVMGR	0	1	Unmodified	1050.5532	0.55320134	518;415;1089	P17858;Q01813;P08237	PFKL;PFKP;PFKM	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, muscle type	no	no	0	0	0	3	0			1														18.96	18.96	2	0.001883	13773	DP690-3	116.25	69.256			0.74365	0.84781	NaN	1	0	Median	12764000	7136500	5627600	14020	518;1089;415	13085	27327	66101;66102;66103;66104	66103		4	9606
TFVNITPAEVGVLVGK	1	0	Unmodified	1642.9294	0.92940782	407	P07737	PFN1	Profilin-1	yes	yes	0	0	0	8	0								1									21.233	21.233	2	0.0023122	14976	DP690-8	86.028	86.028			1.718	1.9685	NaN	1	0	Median	2080300	901250	1179100	14021	407	13086	27328	66105	66105		1	9606
TFVSGACDASIK	1	0	Unmodified	1254.5914	0.59143734	1001	P62879	GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	yes	yes	0	0	0	14	0														1			13.832	13.832	2	0.025266	7236	DP690-14	94.363	48.234			NaN	NaN	NaN	0	0	Median	63478000	63478000	0	14022	1001	13087	27329	66106;66107	66107		2	9606
TFYIDHNSK	1	0	Unmodified	1123.5298	0.52982336	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	3	0			2														11.183	11.183	2;3	0.0046376	3659	DP690-3	101.25	75.314			1.0933	1.1736	NaN	1	0	Median	20326000	9324800	11001000	14023	1911	13088	27330;27331	66108;66109;66110;66111;66112	66108		5	9606
TGAAPIIDVVR	0	1	Unmodified	1110.6397	0.63970816	756	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	13	3.56								1							1	1	16.524	16.524	2	0.00053846	9709	DP690-8	112.3	75.9			0.8056	0.83437	11.36	3	0	Median	607240000	339330000	267920000	14024	756	13089	27332;27333;27334	66113;66114;66115;66116;66117;66118;66119;66120;66121;66122;66123;66124;66125	66125		13	9606
TGAEGAVLDEAK	1	0	Unmodified	1159.5721	0.57208211	648	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	3	0			1														13.349	13.349	2	0.01969	6465	DP690-3	71.555	40.758			1.094	1.1729	NaN	1	0	Median	21361000	9825400	11536000	14025	648	13090	27335	66126;66127	66127		2	9606
TGAFALPILNALLETPQR	0	1	Unmodified	1924.0782	0.078197327	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	10.2	3.56					1				1				1	1			25.629	25.629	2	0.00035866	21088	DP690-5	106.58	106.58			0.69099	0.71374	NaN	1	0	Median	2989300	2156900	832440	14026	2090	13091	27336;27337;27338;27339	66128;66129;66130;66131;66132	66131		5	9606
TGAFSIPVIQIVYETLKDQQEGK	2	0	Unmodified	2563.3534	0.35336913	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	1	10	1									1		1						25.001	25.001	3	5.5028E-30	22840	DP690-11	218.22	205.99			0.82213	0.98771	8.7431	2	0	Median	25602000	13561000	12041000	14027	1768	13092	27340;27341	66133;66134;66135;66136;66137;66138;66139;66140	66137		8	9606
TGAFSIPVIQIVYETLKDQQEGKK	3	0	Unmodified	2691.4483	0.44833215	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	2	11	0											1						23.409	23.409	4	3.6458E-15	20952	DP690-11	167.89	167.89			0.85955	0.93103	NaN	1	0	Median	51204000	27947000	23258000	14028	1768	13093	27342	66141;66142;66143;66144	66141		4	9606
TGAIVDVPVGEELLGR	0	1	Unmodified	1623.8832	0.88318591	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	9.67	4.03				1								1	1				20.252	20.252	2	2.1431E-17	16214	DP690-12	219.92	219.92			0.62477	0.72663	14.601	2	0	Median	307400000	181290000	126100000	14029	585	13094	27343;27344;27345	66145;66146;66147;66148;66149;66150	66145		6	9606
TGCETVDAVQER	0	1	Unmodified	1363.6038	0.60379294	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	10.3	0.943									1		2						11.976	11.976	2	8.1413E-05	4516	DP690-9	141.1	115.03			0.81994	0.99811	NaN	1	0	Median	28230000	14883000	13346000	14030	295	13095	27346;27347;27348	66151;66152;66153;66154;66155;66156	66156		6	9606
TGCNVLLIQK	1	0	Unmodified	1144.6274	0.62742892	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	4	0				1													15.025	15.025	2	0.0010502	8608	DP690-4	117.81	88.641			1.5729	1.7118	NaN	1	0	Median	21767000	9344700	12422000	14031	827	13096	27349	66157;66158	66158		2	9606
TGDFQLHTNVNDGTEFGGSIYQK	1	0	Unmodified	2527.1615	0.16154562	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	14.3	0.471														2	1		22.949	22.949	3	4.3246000000000004E-45	11695	DP690-14	272.51	259.22			0.853	0.93078	24.217	3	0	Median	754580000	396070000	358510000	14032	744	13097	27350;27351;27352	66159;66160;66161;66162;66163;66164;66165;66166;66167	66160		9	9606
TGDVVETFILHSSSPSVR	0	1	Unmodified	1929.9796	0.97960549	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	2	0		1															18.66	18.66	3	0.00068476	12016	DP690-2	82.877	47.777			1.0253	1.0474	NaN	1	0	Median	2777700	1386900	1390800	14033	283	13098	27353	66168;66169	66168		2	9606
TGEAETITTHYLFFLGLYR	0	1	Unmodified	2231.1263	0.12626973	650	P33947;O43731	KDELR2;KDELR3	ER lumen protein-retaining receptor 2;ER lumen protein-retaining receptor 3	yes	no	0	0	0	9	0									1								23.107	23.107	3	0.0019365	18471	DP690-9	72.433	72.433			0.56233	0.68087	NaN	1	0	Median	1847400	1015800	831630	14034	650	13099	27354	66170;66171;66172;66173;66174	66172		5	9606
TGEAIVDAALSALR	0	1	Unmodified	1385.7514	0.75144346	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	10.9	3.66					1	1		1					3	1	1		22.692	22.692	2	2.2696E-59	17409	DP690-5	277.1	164.99			0.7785	0.85747	45.722	3	0	Plateau	563370000	262690000	300680000	14035	1318	13100	27355;27356;27357;27358;27359;27360;27361;27362	66175;66176;66177;66178;66179;66180;66181;66182;66183;66184;66185;66186;66187;66188;66189;66190;66191;66192	66190		18	9606
TGEAYVQFEEPEMANQALLK	1	0	Oxidation (M)	2283.0729	0.072913532	1165	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	1	0	13	0													1				18.551	18.551	2	2.7643E-09	13553	DP690-13	147.52	129.16			0.47215	0.54421	NaN	1	0	Median	14386000	8951500	5434200	14036	1165	13101	27363	66193;66194	66193	1814	2	9606
TGEEDEEEFFCNR	0	1	Unmodified	1660.6311	0.63112991	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.5	0.5									1	1							16.759	16.759	2	8.1811E-32	12059	DP690-10	342.09	327.81			0.91074	1.1322	0.28645	2	0	Median	121290000	65792000	55498000	14037	808	13102	27364;27365	66195;66196;66197;66198;66199;66200;66201;66202	66195		8	9606
TGEEVGFVVDAK	1	0	Unmodified	1249.619	0.6190323	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	2	0		1															15.921	15.921	2	4.9501E-05	8839	DP690-2	128.51	72.5			0.72693	0.72838	NaN	1	0	Median	4508200	2584500	1923800	14038	250	13103	27366	66203;66204;66205;66206	66206		4	9606
TGENVEDAFLEAAK	1	0	Unmodified	1492.7046	0.70455285	939	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	15	0															1		19.089	19.089	2	5.2998E-05	14107	DP690-15	150.06	108.98			0.76299	0.8836	NaN	1	0	Median	47547000	27169000	20378000	14039	939	13104	27367	66207;66208;66209	66209		3	9606
TGEQDGLIGTALNCVLQVPK	1	0	Unmodified	2112.0885	0.088504016	1551	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	10	0										1							23.121	23.121	2	0.0006274	20999	DP690-10	128.22	128.22			0.49446	0.59935	NaN	1	0	Median	8610400	4825300	3785100	14040	1551	13105	27368	66210	66210		1	9606
TGETGIEETILEGHLGVTK	1	0	Unmodified	1983.0161	0.01605058	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	2	0		1															18.671	18.671	3	1.2143E-06	12053	DP690-2	130.27	115.06			1.4153	1.4222	NaN	1	0	Median	7133800	2959700	4174100	14041	1803	13106	27369	66211;66212	66212		2	9606
TGGAYGEDLGADYNLSQVCDGK	1	0	Unmodified	2288.9856	0.98555509	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														17.834	17.834	2	2.8215E-62	11079	DP690-2	326.57	319.51			0.91615	0.94752	5.3091	2	0	Median	26224000	13713000	12512000	14042	789	13107	27370;27371	66213;66214;66215;66216;66217;66218;66219;66220;66221	66214		9	9606
TGGMAFHSYFMEAIAPPLLQELK	1	0	2 Oxidation (M)	2582.2549	0.25491742	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	2	0	2	0		1															21.153	21.153	3	0.00026845	14717	DP690-2	97.589	97.589			0.73511	0.73938	NaN	1	0	Median	8433700	5187000	3246600	14043	789	13108	27372	66222;66223;66224;66225	66223	1188;1189	4	9606
TGGMAFHSYFMEAIAPPLLQELKK	2	0	2 Oxidation (M)	2710.3499	0.34988044	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	2	1	2.5	0.5		1	1														19.635	19.635	4	0.00022265	13079	DP690-2	88.765	70.572			0.67357	0.71735	10.437	2	0	Median	19546000	11843000	7703000	14044	789	13109	27373;27374	66226;66227;66228;66229;66230	66227	1188;1189	4	9606
TGIEQGSDAGYLCESQK	1	0	Unmodified	1841.8102	0.8101569	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	7	4			1								1						14.529	14.529	2	4.3136E-26	8735	DP690-11	249.98	187.35			1.0142	1.0742	NaN	1	0	Median	10158000	4890900	5267300	14045	713	13110	27375;27376	66231;66232;66233;66234;66235	66231		5	9606
TGISDVFAK	1	0	Unmodified	936.49165	0.49164694	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11	0											1						16.437	16.437	2	0.083259	11540	DP690-11	57.96	28.293			1.1121	1.2091	NaN	1	0	Median	344220000	179900000	164310000	14046	534	13111	27377	66236	66236		1	9606
TGISHGHTVYVVHDGFEGLAK	1	0	Unmodified	2223.1073	0.10726562	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	7	4			1								1						13.89	13.89	4	8.8913E-06	7157	DP690-3	124.77	103.1			0.80839	0.89067	26.502	2	0	Median	228180000	126970000	101210000	14047	518	13112	27378;27379	66237;66238;66239;66240;66241;66242	66240		6	9606
TGLIDKTQEPFSVR	1	1	Unmodified	1589.8413	0.8413211	232	O60942	RNGTT	mRNA-capping enzyme;Polynucleotide 5'-triphosphatase;mRNA guanylyltransferase	yes	yes	0	0	1	12	0												1					15.528	15.528	3	0.059564	9779	DP690-12	46.797	23.654			0.65629	0.84292	NaN	1	0	Median	31517000	18488000	13030000	14048	232	13113	27380	66243	66243		1	9606
TGLVYDQNMMNHCNLWDSHHPEVPQR	0	1	2 Oxidation (M)	3209.3866	0.38657008	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	2	0	3	0			3														14.689	14.689	4;5	0.00010717	7999	DP690-3	88.836	83.79			0.62929	0.67081	3.2076	2	0	Median	223120000	135010000	88110000	14049	2316	13114	27381;27382;27383	66244;66245;66246;66247;66248;66249;66250;66251;66252;66253	66248	2766;2767	10	9606
TGLVYDQNMMNHCNLWDSHHPEVPQR	0	1	Oxidation (M)	3193.3917	0.39165546	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	1	0	3	0			2														15.424	15.424	4;5	0.00011102	8997	DP690-3	78.531	73.576			0.66507	0.75822	11.507	2	0	Median	51565000	32224000	19341000	14050	2316	13114	27384;27385	66254;66255;66256;66257;66258;66259;66260	66254	2766;2767	7	9606
TGLYNYYDDEK	1	0	Unmodified	1379.5881	0.5881261	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	5	0					1												15.501	15.501	2	0.044187	8723	DP690-5	64.103	35.407			0.84953	0.84926	NaN	1	0	Median	21840000	10136000	11704000	14051	819	13115	27386	66261	66261		1	9606
TGLYNYYDDEKEK	2	0	Unmodified	1636.7257	0.72568222	819	P50454	SERPINH1	Serpin H1	yes	yes	0	0	1	9	4					1								1				13.941	13.941	2	3.404E-05	6787	DP690-5	189.17	156.95			0.91576	0.95781	1.5205	2	0	Median	132120000	63367000	68751000	14052	819	13116	27387;27388	66262;66263;66264;66265;66266;66267;66268;66269;66270	66268		9	9606
TGMILLAGEITSR	0	1	Oxidation (M)	1376.7334	0.73335055	634	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	1	0	5	0					1												17.192	17.192	2	0.00046434	10804	DP690-5	115.29	68.059			0.80751	0.8426	NaN	1	0	Median	48021000	27416000	20605000	14053	634	13117	27389	66271;66272	66272	870	2	9606
TGMILLAGEITSR	0	1	Unmodified	1360.7384	0.73843593	634	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	5	0					1												19.356	19.356	2	0.00010109	13527	DP690-5	123.67	77.669			0.96564	1.0108	NaN	1	0	Median	34102000	15896000	18206000	14054	634	13117	27390	66273;66274;66275;66276	66273		4	9606
TGMVDFALESGGGSILSTR	0	1	Unmodified	1896.9251	0.92512708	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	9	0									1								20.971	20.971	2	0.013731	16075	DP690-9	94.532	46.417			NaN	NaN	NaN	0	0	Median	2543500	2543500	0	14055	295	13118	27391	66277	66277		1	9606
TGMVDFALESGGGSILSTR	0	1	Oxidation (M)	1912.92	0.9200417	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	1	0	9	0									1								19.231	19.231	2	1.5346E-07	13891	DP690-9	175.29	148.62			NaN	NaN	NaN	0	0	Median	0	0	0	14056	295	13118	27392	66278	66278	306	1	9606
TGNFQVTELGR	0	1	Unmodified	1220.6149	0.61494998	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	6	4		1								1							15.595	15.595	2	9.4682E-05	10395	DP690-10	140.16	122.69			0.73028	0.8759	NaN	1	0	Median	202060000	115480000	86580000	14057	269	13119	27393;27394	66279;66280;66281	66280		3	9606
TGNIPALVR	0	1	Unmodified	939.55016	0.55016488	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														14.621	14.621	2	0.0064093	8217	DP690-3	94.114	50.868			1.1682	1.3099	NaN	1	0	Median	34492000	16654000	17838000	14058	892	13120	27395	66282;66283	66283		2	9606
TGPQLLELSPGEGFSIQEK	1	0	Unmodified	2029.0368	0.036786022	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9.5	0.5									1	1							20.333	20.333	2	0.00034152	15284	DP690-9	105.58	73.943			0.36911	0.45835	NaN	1	0	Median	13653000	3125200	10528000	14059	1102	13121	27396;27397	66284;66285	66285		2	9606
TGQEVVFVAEPDNK	1	0	Unmodified	1531.7518	0.75183739	376	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	12	0												1					15.57	15.57	2	5.2136E-05	9635	DP690-12	125.36	125.36			0.78101	0.91111	NaN	1	0	Median	100460000	32112000	68348000	14060	376	13122	27398	66286;66287	66286		2	9606
TGQEYKPGNPPAEIGQNISSNSSASILESK	2	0	Unmodified	3102.5106	0.51055107	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	6	4		1								1							16.541	16.541	3	9.5652E-20	11804	DP690-10	178.69	163			0.72843	0.82325	1.7935	2	0	Median	102850000	58585000	44267000	14061	408	13123	27399;27400	66288;66289;66290;66291;66292;66293;66294;66295;66296;66297;66298	66289		11	9606
TGQPEELVSCSDCGR	0	1	Unmodified	1693.7036	0.70358334	1789	Q92785	DPF2	Zinc finger protein ubi-d4	yes	yes	0	0	0	13	0													1				13.744	13.744	2	1.6297E-09	6954	DP690-13	196.7	168.78			0.78115	0.95112	NaN	1	0	Median	44797000	24666000	20130000	14062	1789	13124	27401	66299;66300;66301;66302	66300		4	9606
TGQVPTQHIPEVYR	0	1	Unmodified	1623.8369	0.83690442	1969	Q9BQ13	KCTD14	BTB/POZ domain-containing protein KCTD14	yes	yes	0	0	0	15	0															2		13.863	13.863	2;3	0.00010177	7178	DP690-15	112.02	85.311			0.65992	0.73434	NaN	1	0	Median	87739000	54063000	33676000	14063	1969	13125	27402;27403	66303;66304;66305;66306;66307	66305		5	9606
TGQYSGIYDCAK	1	0	Unmodified	1361.5922	0.59216562	1479	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	13	0													1				13.618	13.618	2	4.3111E-05	6811	DP690-13	128.01	119.22			0.89807	1.0393	NaN	1	0	Median	48006000	22345000	25661000	14064	1479	13126	27404	66308;66309;66310;66311;66312;66313	66312		6	9606
TGSGLNSFYDQR	0	1	Unmodified	1343.6106	0.61059288	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	10	0										1							15.297	15.297	2	0.00020671	10052	DP690-10	160.77	128.55			0.75133	0.92144	NaN	1	0	Median	151250000	85658000	65587000	14065	808	13127	27405	66314;66315;66316;66317	66315		4	9606
TGSSSPPGGPPKPGSQLDSMLGSLQSDLNK	2	0	Oxidation (M)	2954.4291	0.42912963	786	P49023	PXN	Paxillin	yes	yes	0	1	1	4	0				1													17.263	17.263	3	0.039254	11488	DP690-4	53.578	33.376			NaN	NaN	NaN	0	0	Median	2133000	2133000	0	14066	786	13128	27406	66318	66318	1172	1	9606
TGSVDIIVTDLPFGK	1	0	Unmodified	1560.8399	0.83992412	2015	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	0	0	4	0				1													21.306	21.306	2	0.0028601	16225	DP690-4	86.114	70.022			1.0813	1.1479	NaN	1	0	Median	1385000	596450	788530	14067	2015	13129	27407	66319;66320	66319		2	9606
TGTAEMSSILEER	0	1	Oxidation (M)	1438.661	0.66097347	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	13.3	1.25												1	1		1		13.925	13.925	2	6.5195E-08	7188	DP690-13	199.68	173.16			0.78849	0.9189	0.94154	2	0	Median	292750000	162510000	130240000	14068	585	13130	27408;27409;27410	66321;66322;66323;66324;66325;66326;66327	66324	775	7	9606
TGTAEMSSILEER	0	1	Unmodified	1422.6661	0.66605885	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	12.8	0.433												1	3				17.029	17.029	2	6.1798E-25	11544	DP690-13	217.02	120.98			0.80555	0.95801	NaN	1	0	Median	120880000	36640000	84239000	14069	585	13130	27411;27412;27413;27414	66328;66329;66330;66331;66332;66333	66330		6	9606
TGTAYTFFTPNNIK	1	0	Unmodified	1573.7777	0.77765821	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	12	2.45									1			1			1		18.311	18.311	2	1.2367000000000001E-30	13494	DP690-12	324.1	297.98			0.78744	0.92846	14.101	3	0	Median	1462799999.9999998	818590000	644210000	14070	517	13131	27415;27416;27417	66334;66335;66336;66337;66338;66339;66340;66341;66342;66343;66344;66345;66346	66336		13	9606
TGTDSNSTESSETSTGSLCK	1	0	Unmodified	2047.8488	0.84878683	1654	Q8N3X1	FNBP4	Formin-binding protein 4	yes	yes	0	0	0	10	0										1							11.346	11.346	2	3.3889E-43	4144	DP690-10	303.3	281.25			0.82026	1.0027	NaN	1	0	Median	26799000	14626000	12173000	14071	1654	13132	27418	66347;66348;66349;66350	66349		4	9606
TGTITTFEHAHNMR	0	1	Oxidation (M)	1630.7522	0.75218852	483	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	5.44	3.06			4	2					2		1						10.921	10.921	3;4	0.00039898	3092	DP690-11	101.38	86.649			1.0251	1.179	7.9135	4	0	Median	489170000	197670000	291500000	14072	483	13133	27419;27420;27421;27422;27423;27424;27425;27426;27427	66351;66352;66353;66354;66355;66356;66357;66358;66359;66360;66361;66362;66363;66364;66365	66352	600	15	9606
TGTITTFEHAHNMR	0	1	Unmodified	1614.7573	0.75727389	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	6.4	3.77			2	1							2						12.095	12.095	3;4	2.1109E-14	5160	DP690-11	219.92	198			1.0421	1.1844	7.0553	4	0	Median	546280000	283480000	262790000	14073	483	13133	27428;27429;27430;27431;27432	66366;66367;66368;66369;66370;66371;66372;66373;66374;66375;66376;66377;66378;66379;66380;66381;66382;66383	66370		18	9606
TGTIVVEGHELHDEDIR	0	1	Unmodified	1918.9385	0.93846896	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			2														14.208	14.208	3;4	0.00037852	7635	DP690-3	89.484	57.785			1.1509	1.305	17.086	2	0	Median	56104000	23360000	32743000	14074	721	13134	27433;27434	66384;66385;66386;66387;66388	66387		5	9606
TGTQEVGGQDPGEAVQPCR	0	1	Unmodified	1984.8909	0.89086684	2279	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	3	0			1														12.892	12.892	2	3.9361999999999996E-43	5797	DP690-3	311.95	291.21			0.77281	0.88008	NaN	1	0	Median	12288000	6937700	5350000	14075	2279	13135	27435	66389;66390;66391;66392	66391		4	9606
TGTSCALDCGAGIGR	0	1	Unmodified	1494.6555	0.65551094	2016	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	yes	yes	0	0	0	15	0															1		13.778	13.778	2	1.1027E-05	7101	DP690-15	157.68	133.21			0.82382	0.95137	NaN	1	0	Median	10407000	5449600	4957600	14076	2016	13136	27436	66393;66394	66393		2	9606
TGTVSLEVR	0	1	Unmodified	960.52401	0.52400971	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														13.503	13.503	2	0.00051604	6069	DP690-2	150.05	95.849			0.94471	1.0095	14.425	2	0	Median	217540000	114430000	103110000	14077	789	13137	27437;27438	66395;66396;66397;66398;66399;66400;66401;66402;66403	66399		9	9606
TGVAVNKPAEFTVDAK	2	0	Unmodified	1645.8675	0.86753585	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10.5	3.12		1							2	2	4		1	1	1		13.848	13.848	2;3	1.4213999999999999E-21	7763	DP690-10	238.88	190.69			0.75312	0.82079	12.306	9	0	Median	7288599999.999999	4178199999.9999995	3110499999.9999995	14078	549	13138	27439;27440;27441;27442;27443;27444;27445;27446;27447;27448;27449;27450	66404;66405;66406;66407;66408;66409;66410;66411;66412;66413;66414;66415;66416;66417;66418;66419;66420;66421;66422;66423;66424;66425;66426;66427;66428;66429;66430;66431;66432;66433;66434;66435;66436;66437;66438	66409		35	9606
TGVELGKPTHFTVNAK	2	0	Unmodified	1697.9101	0.91006937	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	9.57	3.31		2							2	3	4	1	2				12.973	12.973	2;3;4	4.6633E-32	6561	DP690-10	290.1	249.95			0.80478	0.87417	16.041	11	0	Median	8760300000	4947900000	3812399999.9999995	14079	549	13139	27451;27452;27453;27454;27455;27456;27457;27458;27459;27460;27461;27462;27463;27464	66439;66440;66441;66442;66443;66444;66445;66446;66447;66448;66449;66450;66451;66452;66453;66454;66455;66456;66457;66458;66459;66460;66461;66462;66463;66464;66465;66466;66467;66468;66469;66470;66471;66472;66473;66474;66475;66476;66477;66478;66479;66480;66481;66482	66451		44	9606
TGVEVGKPTHFTVLTK	2	0	Unmodified	1712.9461	0.94612052	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	6	4		1								1							13.563	13.563	4	0.00025019	7381	DP690-10	98.421	58.511			0.99944	1.0451	29.156	2	0	Median	779530000	418890000	360640000	14080	1270	13140	27465;27466	66483;66484;66485;66486;66487;66488;66489	66483		7	9606
TGVHHYSGNNIELGTACGK	1	0	Unmodified	2013.9327	0.93267208	1002	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	13.3	3.77								1								2	11.361	11.361	3;4	1.8547E-07	3900	DP690-16	142.35	93.945			1.0536	1.1404	1.699	3	0	Plateau	282340000	137170000	145170000	14081	1002	13141	27467;27468;27469	66490;66491;66492;66493;66494;66495;66496;66497;66498;66499;66500;66501	66495		12	9606
TGVSPGDVSDSATSDSTK	1	0	Unmodified	1709.7592	0.75916719	1438	Q5T5U3	ARHGAP21	Rho GTPase-activating protein 21	yes	yes	0	0	0	10	0										1							12.556	12.556	2	0.0086034	5926	DP690-10	118.52	86.921			NaN	NaN	NaN	0	0	Median	0	0	0	14082	1438	13142	27470	66502	66502		1	9606
TGVTTAVIQPLSVPVQQVHSPTSYLCRPDGTTTAYFPPVFTK	1	1	Unmodified	4560.3363	0.33628587	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	11	0											1						20.725	20.725	4	4.1133E-05	17483	DP690-11	67.214	55.653			NaN	NaN	NaN	0	0	Median	116680000	116680000	0	14083	1758	13143	27471	66503;66504	66503		2	9606
TGVVPQLVK	1	0	Unmodified	939.57532	0.57531699	850	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	4	0				1													15.049	15.049	2	0.060281	8675	DP690-4	64.265	23.692			1.0936	1.1995	NaN	1	0	Median	15254000	7075800	8178100	14084	850	13144	27472	66505	66505		1	9606
TGYGELNGNAGER	0	1	Unmodified	1336.6008	0.60075648	1544	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	13	0													1				12.447	12.447	2	3.6268E-05	5231	DP690-13	129	86.137			0.93009	1.1458	NaN	1	0	Median	18224000	9180300	9043800	14085	1544	13145	27473	66506;66507	66506		2	9606
TGYTLDVTTGQR	0	1	Unmodified	1310.6466	0.64664404	176;207	O43390;O60506	HNRNPR;SYNCRIP	Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q	no	no	0	0	0	11.8	0.4											1	4					14.906	14.906	2	4.6679E-17	8797	DP690-12	197.27	147.23			0.91935	1.0612	NaN	1	0	Median	318560000	260790000	57775000	14086	176;207	13146	27474;27475;27476;27477;27478	66508;66509;66510;66511;66512;66513;66514	66510		7	9606
THAAEDIVYTLQLEDR	0	1	Unmodified	1872.9218	0.92175626	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	10.5	0.5										1	1						18.184	18.184	3	0.00013285	14111	DP690-10	78.249	69.013			0.55213	0.6694	11.155	2	0	Median	177670000	82472000	95194000	14087	1399	13147	27479;27480	66515;66516;66517	66515		3	9606
THAVLVALK	1	0	Unmodified	950.5913	0.59130141	586	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	7	0							1										12.279	12.279	2	0.053341	4900	DP690-7	66.429	66.429			0.99375	1.0734	NaN	1	0	Median	6049700	3147700	2902000	14088	586	13148	27481	66518	66518		1	9606
THEAEIVEGENHTYCIR	0	1	Unmodified	2056.9273	0.92725235	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8.22	3.42		2							2	4		1					13.34	13.34	2;3;4	2.2717E-25	7146	DP690-10	281.32	252.89			0.88336	0.95113	23.632	7	0	Median	1733199999.9999998	930630000	802590000	14089	549	13149	27482;27483;27484;27485;27486;27487;27488;27489;27490	66519;66520;66521;66522;66523;66524;66525;66526;66527;66528;66529;66530;66531;66532;66533;66534;66535;66536;66537;66538;66539;66540;66541	66527		23	9606
THFNKGPSYGLSAEVK	2	0	Acetyl (Protein N-term)	1775.8842	0.88424855	1330	Q15417	CNN3	Calponin-3	yes	yes	1	0	1	14	0														1			14.254	14.254	3	0.0013127	7886	DP690-14	79.514	63.34			0.67221	0.75214	NaN	1	0	Median	84296000	50215000	34082000	14090	1330	13150	27491	66542;66543	66542		2	9606
THFTHSQFIVVSLK	1	0	Unmodified	1642.8831	0.88312633	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	3	0			1														15.099	15.099	3	0.0017744	8785	DP690-3	81.185	63.29			1.497	1.5992	NaN	1	0	Median	13764000	6968100	6795400	14091	317	13151	27492	66544;66545	66544		2	9606
THIDTVINALK	1	0	Unmodified	1223.6874	0.68738664	339	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	11	0											1						15.911	15.911	2	0.00045399	10748	DP690-11	128.6	119.17			0.91018	1.1042	NaN	1	0	Median	74926000	38311000	36616000	14092	339	13152	27493	66546	66546		1	9606
THIDVIHYR	0	1	Unmodified	1152.604	0.60399136	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	7	4			1								1						12.058	12.058	3	0.00027093	5084	DP690-11	117.89	98.627			0.90042	1.0979	NaN	1	0	Median	18034000	9393100	8640500	14093	651	13153	27494;27495	66547;66548;66549;66550;66551;66552	66550		6	9606
THILLFLPK	1	0	Unmodified	1080.6696	0.66955173	402	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	4	0				1													17.49	17.49	2	0.00075675	11783	DP690-4	135.84	125.93			1.0602	1.161	NaN	1	0	Median	16456000	7620100	8835500	14094	402	13154	27496	66553;66554;66555;66556	66555		4	9606
THINIVVIGHVDSGK	1	0	Unmodified	1587.8733	0.87328993	1031;1118	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	12.3	2.19					3				1	2	1	1	35	2		1	23.259	23.259	2;3;4	4.4405E-06	21117	DP690-13	130.02	130.02			0.92371	1.0294	7.1707	31	0	Median	10033000000	5928699999.999999	4104099999.9999995	14095	1031;1118	13155	27497;27498;27499;27500;27501;27502;27503;27504;27505;27506;27507;27508;27509;27510;27511;27512;27513;27514;27515;27516;27517;27518;27519;27520;27521;27522;27523;27524;27525;27526;27527;27528;27529;27530;27531;27532;27533;27534;27535;27536;27537;27538;27539;27540;27541;27542	66557;66558;66559;66560;66561;66562;66563;66564;66565;66566;66567;66568;66569;66570;66571;66572;66573;66574;66575;66576;66577;66578;66579;66580;66581;66582;66583;66584;66585;66586;66587;66588;66589;66590;66591;66592;66593;66594;66595;66596;66597;66598;66599;66600;66601;66602;66603;66604;66605;66606;66607;66608;66609;66610;66611;66612;66613;66614;66615;66616;66617;66618;66619;66620;66621;66622;66623;66624;66625;66626;66627;66628;66629;66630;66631;66632;66633;66634;66635;66636;66637;66638;66639;66640;66641;66642;66643;66644;66645;66646;66647;66648;66649;66650;66651;66652;66653;66654;66655;66656;66657;66658;66659;66660;66661;66662;66663;66664;66665;66666;66667;66668;66669;66670;66671;66672;66673;66674;66675;66676;66677;66678;66679	66611		122	9606
THIQDNHDGTYTVAYVPDVTGR	0	1	Unmodified	2458.1513	0.15131528	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.67	0.471									1	2							15.287	15.287	3;4	7.7518E-20	9880	DP690-10	186.74	186.74			0.78757	0.98239	10.818	3	0	Median	759090000	403560000	355530000	14096	549	13156	27543;27544;27545	66680;66681;66682;66683;66684;66685;66686;66687;66688;66689;66690;66691;66692	66684		13	9606
THKPDPGTPQHTSSRPPEPQK	2	1	Unmodified	2321.1513	0.1512557	2329	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	2	10.7	0.471										1	2						10.059	10.059	5	0.0038844	2148	DP690-11	60.034	36.024			0.45583	0.55142	6.2681	3	0	Median	181510000	115960000	65549000	14097	2329	13157	27546;27547;27548	66693;66694;66695	66694		3	9606
THLHTPPDLPEGYEQR	0	1	Unmodified	1888.9068	0.9067749	2156	Q9HAU4	SMURF2	E3 ubiquitin-protein ligase SMURF2	yes	yes	0	0	0	11	0											2						13.157	13.157	3	8.5904E-05	6614	DP690-11	155.56	122.81			NaN	NaN	NaN	0	0	Median	33035000	33035000	0	14098	2156	13158	27549;27550	66696;66697;66698	66698		3	9606
THLQLGSVLYHHTK	1	0	Unmodified	1632.8736	0.87362428	2527	Q9Y6X3	MAU2	MAU2 chromatid cohesion factor homolog	yes	yes	0	0	0	12	0												1					12.661	12.661	3	0.0095229	5739	DP690-12	65.528	65.528			1.0072	1.2081	NaN	1	0	Median	29426000	13817000	15608000	14099	2527	13159	27551	66699	66699		1	9606
THLSLSHNPEQK	1	0	Unmodified	1389.7001	0.70007659	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7	4			1								1						10.353	10.353	3	3.5899E-05	2638	DP690-11	136.53	107.91			0.80873	0.80763	5.2664	2	0	Median	1418700000	761150000	657530000	14100	470	13160	27552;27553	66700;66701;66702;66703;66704;66705	66703		6	9606
THMQDLKDVTNNVHYENYR	1	1	Oxidation (M)	2392.0866	0.086606536	1351	Q16181	SEPT7	Septin-7	yes	yes	0	1	1	13	0													1				13.35	13.35	4	4.821E-05	6448	DP690-13	116.51	99.365			0.89576	0.99937	NaN	1	0	Median	123140000	68648000	54495000	14101	1351	13161	27554	66706;66707;66708;66709	66709	2096	4	9606
THMQDLKDVTNNVHYENYR	1	1	Unmodified	2376.0917	0.091691914	1351	Q16181	SEPT7	Septin-7	yes	yes	0	0	1	13	0													1				14.322	14.322	4	0.00056457	7836	DP690-13	82.865	63.074			0.89463	1.0232	NaN	1	0	Median	83695000	45292000	38403000	14102	1351	13161	27555	66710	66710		1	9606
THMVVANTMEDFQK	1	0	2 Oxidation (M)	1681.744	0.74399159	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	2	0	2	0		1															11.161	11.161	3	0.0011861	3376	DP690-2	85.271	67.485			1.0917	1.0974	NaN	1	0	Median	7590100	3329100	4260900	14103	408	13162	27556	66711;66712;66713;66714;66715	66714	451;452	5	9606
THNLEPYFESFINNLR	0	1	Unmodified	1992.9694	0.96937516	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	7.6	4.24	2		1	1	1	1	1	1	2	2	1			1		1	21.605	21.605	2;3	5.3858E-48	16625	DP690-9	210.02	164.88		+	NaN	NaN	NaN	0	0	Median	335830000	335830000	0	14104	369	13163	27557;27558;27559;27560;27561;27562;27563;27564;27565;27566;27567;27568;27569;27570;27571	66716;66717;66718;66719;66720;66721;66722;66723;66724;66725;66726;66727;66728;66729;66730;66731;66732;66733;66734;66735;66736;66737;66738;66739;66740;66741;66742;66743	66742		28	9606
THNLEPYFESFINNLRR	0	2	Unmodified	2149.0705	0.070486187	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	8.62	5.29	1	1				1		1	1		1					2	20.397	20.397	3;4	0.0012146	13953	DP690-2	75.018	51.582		+	0.52903	0.54831	33.209	2	0	Median	74277000	71557000	2719700	14105	369	13164	27572;27573;27574;27575;27576;27577;27578;27579	66744;66745;66746;66747;66748;66749;66750;66751;66752;66753;66754;66755;66756;66757	66750		14	9606
THPQWYPAR	0	1	Unmodified	1154.5621	0.56212655	2269	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	9.5	0.5									1	1							12.155	12.155	2	0.0029412	5419	DP690-10	108.09	93.223			0.7461	0.91334	3.65	2	0	Median	151970000	81656000	70311000	14106	2269	13165	27580;27581	66758;66759;66760;66761;66762;66763	66758		6	9606
THQALGILSK	1	0	Unmodified	1066.6135	0.61349341	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	11	0											1						12.571	12.571	2	0.015725	5766	DP690-11	75.652	57.39			0.80862	0.95336	NaN	1	0	Median	120400000	66072000	54332000	14107	723	13166	27582	66764;66765;66766	66765		3	9606
THQLSLDAFLVALK	1	0	Unmodified	1554.877	0.87697832	1421	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	14	0														1			21.248	21.248	3	2.7581E-05	17222	DP690-14	152.11	134.32			0.75463	0.90658	NaN	1	0	Median	24397000	14321000	10076000	14108	1421	13167	27583	66767;66768	66767		2	9606
THSDQFLVAFK	1	0	Unmodified	1291.6561	0.65608651	678	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	15	0															1		16.099	16.099	2	0.00016618	10153	DP690-15	144.77	99.788			0.88699	1.0048	NaN	1	0	Median	81457000	45293000	36164000	14109	678	13168	27584	66769;66770	66769		2	9606
THSQGGYGSQGYK	1	0	Unmodified	1368.6058	0.60584185	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	12	0												1					10.157	10.157	2	0.001151	2363	DP690-12	101.3	89.082			0.74648	0.90431	NaN	1	0	Median	3700500	2229200	1471300	14110	2434	13169	27585	66771;66772;66773	66771		3	9606
THSVNGITEEADPTIYSGK	1	0	Unmodified	2017.9593	0.95926398	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	11	0											1						14.532	14.532	3	0.00023232	8696	DP690-11	94.313	74.135			0.73613	0.89012	NaN	1	0	Median	59161000	35171000	23990000	14111	264	13170	27586	66774;66775;66776	66774		3	9606
THTDTESEASILGDSGEYK	1	0	Unmodified	2038.8967	0.89672331	2473	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	yes	yes	0	0	0	16	0																2	14.705	14.705	2;3	6.159E-51	8189	DP690-16	279.65	227.92			0.87842	0.99729	NaN	1	0	Median	45259000	22029000	23231000	14112	2473	13171	27587;27588	66777;66778;66779	66779		3	9606
THVADFAPEVAWVTR	0	1	Unmodified	1697.8526	0.85255449	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	6	4		1								1							18.696	18.696	3	0.0001687	14876	DP690-10	107.35	92.186			0.70824	0.79951	7.6914	2	0	Median	78267000	49958000	28309000	14113	408	13172	27589;27590	66780;66781	66780		2	9606
THVTHHPLSDHEATLR	0	1	Unmodified	1849.9183	0.91834264	454	P10321	HLA-C	HLA class I histocompatibility antigen, Cw-7 alpha chain	yes	yes	0	0	0	16	0																1	10.152	10.152	4	0.0005471	2551	DP690-16	87.519	0			0.72345	0.85012	NaN	1	0	Median	3423700	1939700	1484000	14114	454	13173	27591	66782;66783	66783		2	9606
THYIVGYNLPSYEYLYNLGDQYALK	1	0	Unmodified	2996.4596	0.45962512	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												1					21.748	21.748	3	3.0539E-12	18056	DP690-12	161.56	161.56			0.63121	0.75884	NaN	1	0	Median	19611000	11461000	8150400	14115	375	13174	27592	66784;66785;66786	66784		3	9606
THYPAQQGEYQTHQPVYHK	1	0	Unmodified	2311.077	0.077028128	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	3.5	0.5			1	1													10.502	10.502	4	0.0001263	2877	DP690-4	101.3	85.296			0.73185	0.78019	1.7423	2	0	Median	79231000	45147000	34084000	14116	342	13175	27593;27594	66787;66788;66789;66790;66791;66792;66793	66790		7	9606
THYSELTTLTSQYIK	1	0	Unmodified	1783.8992	0.89922991	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.33	0.471									2	1							17.638	17.638	2;3	8.2575E-06	13310	DP690-10	148.85	111.24			0.85214	0.9995	10.933	2	0	Median	428780000	238900000	189880000	14117	1319	13176	27595;27596;27597	66794;66795;66796;66797;66798;66799;66800;66801;66802;66803	66794		10	9606
THYSNIEANESEEVR	0	1	Unmodified	1776.7915	0.79147037	373	P04632	CAPNS1	Calpain small subunit 1	yes	yes	0	0	0	11	4							2								2		12.036	12.036	2;3	2.5065E-17	4769	DP690-15	193.49	165.29			0.98014	1.0828	2.7913	2	0	Median	182460000	91084000	91379000	14118	373	13177	27598;27599;27600;27601	66804;66805;66806;66807;66808;66809;66810	66804		7	9606
TIAECLADELINAAK	1	0	Unmodified	1630.8236	0.82362212	761	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	13.2	3.63							1								2	1	23.28	23.28	2	1.3078E-05	18595	DP690-15	140.78	109.02			0.99165	1.1501	4.4003	3	0	Median	19844000	6941600	12902000	14119	761	13178	27602;27603;27604;27605	66811;66812;66813;66814;66815;66816;66817;66818;66819;66820;66821;66822;66823;66824;66825	66816		15	9606
TIAIIAEGIPEALTR	0	1	Unmodified	1566.8981	0.8981077	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	8.33	3.77			1								2						21.063	21.063	2	1.6715E-09	16298	DP690-3	196.27	145.46			0.84325	0.95812	NaN	1	0	Median	48298000	13743000	34555000	14120	873	13179	27606;27607;27608	66826;66827;66828;66829;66830;66831	66828		6	9606
TIAPTGHLHTVEFHQQR	0	1	Unmodified	1971.0075	0.0074919995	1857	Q96FX7	TRMT61A	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	yes	yes	0	0	0	15	0															1		11.839	11.839	5	0.020844	4584	DP690-15	59.261	33.415			NaN	NaN	NaN	0	0	Median	1811600	1811600	0	14121	1857	13180	27609	66832;66833	66833		2	9606
TIAQDYGVLK	1	0	Unmodified	1106.5972	0.59717465	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	12.2	3.72						1	1	2	1						7	1	17.972	17.972	1;2	9.1261E-05	9500	DP690-15	153.08	98.307			0.95935	0.83144	17.629	9	0	Linear	14472000000	7410099999.999999	7062399999.999999	14122	1128	13181	27610;27611;27612;27613;27614;27615;27616;27617;27618;27619;27620;27621;27622	66834;66835;66836;66837;66838;66839;66840;66841;66842;66843;66844;66845;66846;66847;66848;66849;66850;66851;66852;66853;66854;66855;66856;66857;66858;66859;66860;66861;66862;66863;66864;66865;66866;66867;66868;66869;66870;66871;66872;66873	66835		40	9606
TIAQDYGVLKADEGISFR	1	1	Unmodified	1982.0109	0.010905622	1128	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	7	0							2										18.209	18.209	3	0.038574	12359	DP690-7	92.307	59.224			1.0979	1.1572	NaN	1	0	Median	31516000	12597000	18919000	14123	1128	13182	27623;27624	66874;66875	66874		1	9606
TIAQGNLSNTDVQAAK	1	0	Unmodified	1629.8322	0.83221298	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13	3.7					1								1	1	2	1	13.271	13.271	2	8.4517E-24	6304	DP690-13	267.37	267.37			0.80852	0.83743	8.0572	4	0	Median	1983499999.9999998	1066299999.9999999	917270000	14124	565	13183	27625;27626;27627;27628;27629;27630	66876;66877;66878;66879;66880;66881;66882;66883;66884;66885;66886;66887;66888;66889;66890;66891;66892	66879		17	9606
TIAQVLVHLHR	0	1	Unmodified	1285.7619	0.76188899	1956	Q99747	NAPG	Gamma-soluble NSF attachment protein	yes	yes	0	0	0	14	0														1			15.212	15.212	3	0.024364	9160	DP690-14	78.655	42.335			NaN	NaN	NaN	0	0	Median	15899000	15899000	0	14125	1956	13184	27631	66893	66893		1	9606
TICSHVQNMIK	1	0	Oxidation (M)	1345.6482	0.64824072	647	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	1	0	15	0															3		10.817	10.817	2;3	0.0012942	3321	DP690-15	139.43	100.68			0.93362	1.0228	NaN	1	0	Median	191810000	104170000	87646000	14126	647	13185	27632;27633;27634	66894;66895;66896;66897;66898;66899;66900;66901	66901	904	8	9606
TIDDLEDELYAQK	1	0	Unmodified	1551.7304	0.73043325	398	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	0	15	0															1		18.957	18.957	2	0.0043524	13882	DP690-15	126.67	90.247			NaN	NaN	NaN	0	0	Median	3189200	3189200	0	14127	398	13186	27635	66902;66903	66902		2	9606
TIDDLEEKLAQAK	2	0	Unmodified	1472.7722	0.77223848	1028	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	1	15	0															1		16.6	16.6	3	0.00015518	10956	DP690-15	110.31	110.31			0.96087	1.1003	NaN	1	0	Median	44935000	23843000	21092000	14128	1028	13187	27636	66904;66905	66904		2	9606
TIDDLKNQILNLTTDNANILLQIDNAR	1	1	Unmodified	3051.62	0.62004194	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	5	3.27	1				1				1								24.778	24.778	3	1.2606E-27	20116	DP690-5	190.99	159.61		+	NaN	NaN	NaN	0	0	Median	25267000	25267000	0	14129	42	13188	27637;27638;27639	66906;66907;66908;66909;66910;66911;66912;66913;66914	66911		9	9606
TIDEGDADEVTK	1	0	Unmodified	1291.578	0.57795535	1534	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	10	0										1							12.64	12.64	2	0.023596	6040	DP690-10	95.483	30.326			NaN	NaN	NaN	0	0	Median	7522000	0	7522000	14130	1534	13189	27640	66915	66915		1	9606
TIDGILLLIER	0	1	Unmodified	1254.7547	0.75473792	1230;1231	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	0	0	0	9	3.46			1								3						23.234	23.234	2	9.4682E-05	18831	DP690-3	130.98	130.98			0.76348	0.87685	22.814	2	0	Median	6719200	3952600	2766700	14131	1230;1231	13190	27641;27642;27643;27644	66916;66917;66918;66919;66920;66921;66922;66923;66924	66924		9	9606
TIDGQQTIIACIESHQFQPK	1	0	Unmodified	2313.1423	0.1423305	864	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	10	4						2								2			19.062	19.062	2;3	1.921E-23	14375	DP690-14	242.4	218.57			0.85627	0.98131	14.646	2	0	Median	734870000	386580000	348290000	14132	864	13191	27645;27646;27647;27648	66925;66926;66927;66928;66929;66930;66931;66932;66933;66934	66930		10	9606
TIDNADSSTLHAVTFLR	0	1	Unmodified	1859.9377	0.93774068	1698	Q8NFH3	NUP43	Nucleoporin Nup43	yes	yes	0	0	0	14	0														1			17.329	17.329	3	9.4959E-08	12079	DP690-14	147.7	123.81			0.85157	0.99969	NaN	1	0	Median	148450000	80479000	67969000	14133	1698	13192	27649	66935;66936;66937	66935		3	9606
TIECISLIGLAVGK	1	0	Unmodified	1472.8273	0.82725094	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			1														21.236	21.236	2	0.0028987	16653	DP690-3	88.596	61.168			1.0852	1.1465	NaN	1	0	Median	9049000	4691400	4357700	14134	82	13193	27650	66938;66939;66940;66941	66938		4	9606
TIEEQLDEEHLESHKK	2	0	Unmodified	1963.9487	0.9486993	2438	Q9Y2D5	AKAP2	A-kinase anchor protein 2	yes	yes	0	0	1	10.5	0.5										1	1						12.433	12.433	3	2.8561E-08	5634	DP690-11	175.6	140.51			0.92657	1.101	8.17	2	0	Median	223850000	116380000	107480000	14135	2438	13194	27651;27652	66942;66943;66944;66945;66946;66947;66948	66947		7	9606
TIEESEETLK	1	0	Unmodified	1177.5714	0.57141341	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	3	0			1														12.732	12.732	2	0.0086999	5626	DP690-3	112.11	57.902			NaN	NaN	NaN	0	0	Median	9603500	9603500	0	14136	317	13195	27653	66949	66949		1	9606
TIEGITVTVHMPK	1	0	Oxidation (M)	1440.7647	0.76465068	2447	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	1	0	13	0													1				14.059	14.059	3	0.019723	7370	DP690-13	59.185	38.344			0.8809	1.0178	NaN	1	0	Median	65244000	33859000	31385000	14137	2447	13196	27654	66950;66951;66952	66951	2897	3	9606
TIEIESLNEVLK	1	0	Unmodified	1386.7606	0.76061116	1211	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	2	0		1															19.895	19.895	2	0.00032506	13397	DP690-2	117.71	87.388			0.72256	0.7115	NaN	1	0	Median	2313500	1232000	1081500	14138	1211	13197	27655	66953;66954	66953		2	9606
TIEQNINNLNVSEADRK	1	1	Unmodified	1956.9865	0.98648179	1304	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	1	3	0			1														14.701	14.701	3	0.0029024	8245	DP690-3	70.235	70.235			1.177	1.3053	NaN	1	0	Median	19674000	9642000	10032000	14139	1304	13198	27656	66955;66956;66957	66956		3	9606
TIESANQQTDKLK	2	0	Unmodified	1474.7627	0.76273643	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	1	11	0											1						10.525	10.525	3	8.0624E-06	2866	DP690-11	180.2	112.98			0.80136	0.87756	NaN	1	0	Median	410610000	233470000	177130000	14140	288	13199	27657	66958;66959;66960	66958		3	9606
TIEVLQLQDQGSK	1	0	Unmodified	1457.7726	0.77257283	1859	Q96GC5	MRPL48	39S ribosomal protein L48, mitochondrial	yes	yes	0	0	0	16	0																1	16.714	16.714	2	5.9176E-05	10700	DP690-16	175.49	122.76			0.68384	0.79308	NaN	1	0	Median	27427000	15738000	11689000	14141	1859	13200	27658	66961;66962;66963;66964;66965	66964		5	9606
TIEYLQPNPASR	0	1	Unmodified	1387.7096	0.70957864	1964	Q99961;Q99962	SH3GL1;SH3GL2	Endophilin-A2;Endophilin-A1	yes	no	0	0	0	10.3	3.77					1								2				14.976	14.976	2	0.00018184	7929	DP690-5	151.83	93.393			0.71225	0.87247	NaN	1	0	Median	93282000	43667000	49614000	14142	1964	13201	27659;27660;27661	66966;66967;66968;66969;66970;66971	66970		6	9606
TIFFKDDGNYK	2	0	Unmodified	1346.6507	0.65066678	57	CON__Q9U6Y5			yes	yes	0	0	1	6.45	2.35	2	2	2	2	18	3	41	4				1		1	2		19.79	19.79	2;3	1.014E-15	14685	DP690-7	202.2	153.14		+	0.51302	0.55351	195.55	20	0	Median	122780000000	75283000000	47496000000	14143	57	13202	27662;27663;27664;27665;27666;27667;27668;27669;27670;27671;27672;27673;27674;27675;27676;27677;27678;27679;27680;27681;27682;27683;27684;27685;27686;27687;27688;27689;27690;27691;27692;27693;27694;27695;27696;27697;27698;27699;27700;27701;27702;27703;27704;27705;27706;27707;27708;27709;27710;27711;27712;27713;27714;27715;27716;27717;27718;27719;27720;27721;27722;27723;27724;27725;27726;27727;27728;27729;27730;27731;27732;27733;27734;27735;27736;27737;27738;27739	66972;66973;66974;66975;66976;66977;66978;66979;66980;66981;66982;66983;66984;66985;66986;66987;66988;66989;66990;66991;66992;66993;66994;66995;66996;66997;66998;66999;67000;67001;67002;67003;67004;67005;67006;67007;67008;67009;67010;67011;67012;67013;67014;67015;67016;67017;67018;67019;67020;67021;67022;67023;67024;67025;67026;67027;67028;67029;67030;67031;67032;67033;67034;67035;67036;67037;67038;67039;67040;67041;67042;67043;67044;67045;67046;67047;67048;67049;67050;67051;67052;67053;67054;67055;67056;67057;67058;67059;67060;67061;67062;67063;67064;67065;67066;67067;67068;67069;67070;67071;67072;67073;67074;67075;67076;67077;67078;67079;67080;67081;67082;67083;67084;67085;67086;67087;67088;67089;67090;67091;67092;67093;67094;67095;67096;67097;67098;67099;67100;67101;67102;67103;67104;67105;67106;67107;67108;67109;67110;67111;67112;67113;67114;67115;67116;67117;67118;67119;67120;67121;67122;67123;67124;67125;67126;67127;67128;67129;67130;67131;67132;67133;67134;67135	67064		164	
TIFFKDDGNYKTR	2	1	Unmodified	1603.7995	0.79945628	57	CON__Q9U6Y5			yes	yes	0	0	2	7.5	0.5							2	2									13.17	13.17	3;4	1.8544E-05	6018	DP690-8	160.56	141.39		+	0.19565	0.20844	139.48	3	0	Plateau	566520000	536640000	29885000	14144	57	13203	27740;27741;27742;27743	67136;67137;67138;67139;67140;67141;67142;67143;67144;67145	67144		10	
TIFGDMLLTEPLEK	1	0	Oxidation (M)	1621.8273	0.82731052	1077	Q00722	PLCB2	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2	yes	yes	0	1	0	5	0					1												13.16	13.16	3	0.04172	6107	DP690-5	52.071	25.96			30.884	30.665	NaN	1	0	Median	264380000	12987000	251390000	14145	1077	13204	27744	67146;67147	67147	1685	2	9606
TIFGSIPDIFDVHTK	1	0	Unmodified	1688.8774	0.87737225	2137	Q9H8V3	ECT2	Protein ECT2	yes	yes	0	0	0	11	0											1						21.589	21.589	3	0.01996	18775	DP690-11	55.755	43.03			0.99114	1.2248	NaN	1	0	Median	14782000	6985900	7796300	14146	2137	13205	27745	67148;67149	67148		2	9606
TIFIISMYK	1	0	Unmodified	1114.6097	0.60965359	1245	Q14116	IL18	Interleukin-18	yes	yes	0	0	0	7	0							1										19.916	19.916	2	0.019309	14495	DP690-7	80.165	80.165			0.65897	0.72069	NaN	1	0	Median	13144000	7402700	5741000	14147	1245	13206	27746	67150;67151	67150		2	9606
TIGGGDDSFNTFFSETGAGK	1	0	Unmodified	2006.8858	0.88576469	1032;1521;1977;452	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;Q9BQE3	TUBA3E;TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	9.29	4.03			3	2	1	2	1	1	1	1	1	1	9		1		21.924	21.924	2	9.5809E-44	14419	DP690-5	312.91	268.35			0.9926	1.1056	13.539	14	0	Median	4972600000	2403800000	2568800000	14148	452;1032;1521;1977	13207	27747;27748;27749;27750;27751;27752;27753;27754;27755;27756;27757;27758;27759;27760;27761;27762;27763;27764;27765;27766;27767;27768;27769;27770	67152;67153;67154;67155;67156;67157;67158;67159;67160;67161;67162;67163;67164;67165;67166;67167;67168;67169;67170;67171;67172;67173;67174;67175;67176;67177;67178;67179;67180;67181;67182;67183;67184;67185;67186;67187;67188;67189;67190;67191;67192;67193;67194;67195;67196;67197;67198;67199;67200;67201;67202;67203;67204;67205;67206;67207;67208	67192		57	9606
TIGGGDDSFNTFFSETGAGKHVPR	1	1	Unmodified	2496.167	0.16696535	1032;1521;1977;452	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;Q9BQE3	TUBA3E;TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	9	4					1								1				17.371	17.371	4	0.00060888	11069	DP690-5	72.771	65.843			1.0224	1.1477	5.5541	2	0	Median	100180000	51183000	49000000	14149	452;1032;1521;1977	13208	27771;27772	67209;67210;67211;67212;67213	67210		5	9606
TIGGGDDSFTTFFCETGAGK	1	0	Unmodified	2066.8891	0.88913551	1033	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	9	4					1								1				20.793	20.793	2	1.0514E-31	16457	DP690-13	252.14	234.54			1.1271	1.2131	0.090974	2	0	Median	59965000	28456000	31509000	14150	1033	13209	27773;27774	67214;67215;67216;67217;67218;67219;67220;67221;67222	67216		9	9606
TIGISVDPR	0	1	Unmodified	956.5291	0.52909508	593	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	15	0															1		14.812	14.812	2	0.0051631	8562	DP690-15	99.136	52.71			0.81017	0.86768	NaN	1	0	Median	225250000	125070000	100180000	14151	593	13210	27775	67223;67224	67224		2	9606
TIGTGLVTNTLAMTEEEK	1	0	Oxidation (M)	1922.9507	0.95067313	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	1	0	13	0													1				18.254	18.254	2	1.8427E-14	13205	DP690-13	195.94	165.8			1.5434	1.7873	NaN	1	0	Median	42986000	15999000	26987000	14152	793	13211	27776	67225	67225	1202	1	9606
TIGTGLVTNTLAMTEEEK	1	0	Unmodified	1906.9558	0.95575851	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	5	0					1												19.514	19.514	2	0.038861	13777	DP690-5	93.478	45.766			NaN	NaN	NaN	0	0	Median	0	0	0	14153	793	13211	27777	67226	67226		1	9606
TIHLSSIRPPR	0	2	Unmodified	1275.7412	0.74115354	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	1	11	0											1						12.578	12.578	3	0.0032374	5864	DP690-11	82.261	82.261			0.60356	0.74402	NaN	1	0	Median	56083000	33690000	22394000	14154	1524	13212	27778	67227;67228;67229	67229		3	9606
TIIFVETK	1	0	Unmodified	949.54843	0.54843354	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11.5	0.5											1	1					15.973	15.973	2	0.0044427	10322	DP690-12	125.81	85.241			0.89419	0.95337	NaN	1	0	Median	538930000	337930000	201000000	14155	1793	13213	27779;27780	67230;67231;67232	67231		2	9606
TIIGQQGDQSCANK	1	0	Unmodified	1518.7097	0.709655	664	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	10.8	0.433										1	3						10.974	10.974	2	3.9905E-06	3721	DP690-10	182.28	165.12			0.81392	1.0004	NaN	1	0	Median	43158000	20917000	22240000	14156	664	13214	27781;27782;27783;27784	67233;67234;67235;67236;67237;67238;67239	67234		7	9606
TIISLDTSQMNR	0	1	Oxidation (M)	1393.6871	0.68712864	61	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	1	0	12	0												1					15.084	15.084	2	0.0021981	9164	DP690-12	101.97	83.017			0.92721	1.1025	NaN	1	0	Median	35887000	18574000	17313000	14157	61	13215	27785	67240	67240	66	1	9606
TIISYIDEQFER	0	1	Unmodified	1512.746	0.74602373	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	14	0														1			21.251	21.251	2	4.2908E-08	17195	DP690-14	208.6	176.39			0.91447	1.076	NaN	1	0	Median	141790000	71474000	70317000	14158	1310	13216	27786	67241	67241		1	9606
TILEEEITPTIQK	1	0	Unmodified	1513.8239	0.8239397	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	11	0											1						17.459	17.459	2	0.00048606	12958	DP690-11	108.98	84.193			1.1493	1.3917	NaN	1	0	Median	43566000	21193000	22373000	14159	317	13217	27787	67242	67242		1	9606
TILGPTENIK	1	0	Unmodified	1084.6128	0.61282471	256	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	5	0					1												14.381	14.381	2	0.04909	7326	DP690-5	88.948	24.683			NaN	NaN	NaN	0	0	Median	0	0	0	14160	256	13218	27788	67243	67243		1	9606
TILLLLLETLGDKDHSIR	1	1	Unmodified	2049.1834	0.18339068	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	1	10	0										1							23.16	23.16	3	0.0097679	20908	DP690-10	94.385	65.75			NaN	NaN	NaN	0	0	Median	0	0	0	14161	1546	13219	27789	67244	67244		1	9606
TILLSTTDPADFAVAEALEK	1	0	Unmodified	2104.094	0.09396655	895	P55196	MLLT4	Afadin	yes	yes	0	0	0	10	0										1							22.385	22.385	2	0.00013415	19934	DP690-10	142.1	102.22			0.77387	0.95108	NaN	1	0	Median	35992000	20108000	15884000	14162	895	13220	27790	67245;67246;67247	67247		3	9606
TILQHLSEAWR	0	1	Unmodified	1352.7201	0.72008375	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	9.5	0.5									1	1							17.679	17.679	3	0.00010443	13420	DP690-10	119.27	89.741			0.91143	1.1361	5.9982	2	0	Median	99444000	54426000	45019000	14163	1492	13221	27791;27792	67248;67249;67250;67251;67252	67251		5	9606
TILSLMTR	0	1	Unmodified	933.53174	0.53173762	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	11	0											1						18.188	18.188	2	0.011283	13954	DP690-11	118.74	49.567			NaN	NaN	NaN	0	0	Median	20208000	0	20208000	14164	873	13222	27793	67253	67253		1	9606
TILTTSHAFPYIK	1	0	Unmodified	1490.8133	0.81331543	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										1							16.877	16.877	3	0.02352	12305	DP690-10	56.295	30.165			0.81182	1.0004	NaN	1	0	Median	52808000	25396000	27412000	14165	1901	13223	27794	67254	67254		1	9606
TIMVNYNPETVSTDYDMCDR	0	1	2 Oxidation (M)	2454.9978	0.99777603	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	2	0	2	0		1															17.198	17.198	2	0.00014692	10354	DP690-2	116.58	114.22			1.1223	1.1483	NaN	1	0	Median	2067500	868800	1198700	14166	602	13224	27795	67255;67256;67257	67255	820;821	3	9606
TINEVENQILTR	0	1	Unmodified	1428.7573	0.75725712	476;186	P12814;O43707	ACTN1;ACTN4	Alpha-actinin-1;Alpha-actinin-4	no	no	0	0	0	8.33	3.77			1								2						17.067	17.067	2	3.5105E-34	12415	DP690-11	234.67	162.34			1.6657	1.826	NaN	1	0	Median	374940000	182270000	192670000	14167	476;186	13225	27796;27797;27798	67258;67259;67260;67261;67262;67263	67261		6	9606
TINLYPLTNYTFGTK	1	0	Unmodified	1744.9036	0.903587	190	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	15	0															1		20.923	20.923	2	0.00044328	16244	DP690-15	108.3	67.726			1.8128	2.0931	NaN	1	0	Median	4135800	1472800	2663000	14168	190	13226	27799	67264;67265;67266;67267	67266		4	9606
TIPGTALVEMGDEYAVER	0	1	Oxidation (M)	1965.9354	0.93535742	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	1	0	12	0												2					18.421	18.421	2	0.00037969	13745	DP690-12	111.66	111.66			0.83469	0.98958	NaN	1	0	Median	45042000	19797000	25245000	14169	1750	13227	27800;27801	67268;67269;67270	67269	2324	3	9606
TIPLTDNTVIEEHLGK	1	0	Unmodified	1778.9414	0.94142907	1468	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	15	0															1		17.007	17.007	3	0.0055353	11476	DP690-15	82.663	54.518			NaN	NaN	NaN	0	0	Median	14553000	14553000	0	14170	1468	13228	27802	67271;67272	67271		2	9606
TIPYSDKLFEMVLGPAAYNVPLPK	2	0	Oxidation (M)	2678.403	0.40296186	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	1	1	11	0											1						22.271	22.271	3	0.0071834	19589	DP690-11	55.209	26.341			0.64011	0.77159	NaN	1	0	Median	24619000	13657000	10962000	14171	1375	13229	27803	67273;67274;67275;67276	67274	2121	4	9606
TIQAHEGFVR	0	1	Unmodified	1156.5989	0.59890598	2227	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	yes	yes	0	0	0	13	0													1				11.15	11.15	3	0.021694	3584	DP690-13	76.228	47.272			NaN	NaN	NaN	0	0	Median	0	0	0	14172	2227	13230	27804	67277	67277		1	9606
TIQESSNLNEEDTGVTNR	0	1	Unmodified	2005.9189	0.91885573	1438	Q5T5U3	ARHGAP21	Rho GTPase-activating protein 21	yes	yes	0	0	0	10	0										1							13.6	13.6	2	1.188E-14	7455	DP690-10	200.76	139.53			NaN	NaN	NaN	0	0	Median	0	0	0	14173	1438	13231	27805	67278	67278		1	9606
TIQFVDWCPTGFK	1	0	Unmodified	1597.7599	0.75989966	1521;1977;452	P0DPH7;P0DPH8;Q6PEY2;Q71U36;Q9BQE3	TUBA3E;TUBA1A;TUBA1C	Tubulin alpha-3E chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	7.33	4.03				1	1								1				20.589	20.589	2	3.264E-05	16186	DP690-13	176.48	137.68			1.0027	0.99364	14.032	3	0	Median	914190000	473410000	440790000	14174	452;1521;1977	13232	27806;27807;27808	67279;67280;67281;67282;67283;67284;67285;67286;67287	67279		9	9606
TIQTIALITYLMEHK	1	0	Unmodified	1773.9699	0.96989243	834;835	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	10	0										1							22.54	22.54	3	0.0017909	20128	DP690-10	75.961	75.961			0.84091	1.0193	NaN	1	0	Median	8549500	3832700	4716700	14175	834;835	13233	27809	67288;67289;67290	67288		3	9606
TIQVENSHLILTGAGALNK	1	0	Unmodified	1978.0847	0.084739268	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															16.761	16.761	3	4.1426E-05	9812	DP690-2	117.3	102.09			1.0611	1.068	NaN	1	0	Median	9511600	4704000	4807700	14176	1179	13234	27810	67291;67292;67293;67294	67292		4	9606
TIRYPDPLIK	1	1	Unmodified	1214.7023	0.70230842	986	P62701;Q8TD47	RPS4X;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	1	15	0															1		15.129	15.129	3	0.024452	8890	DP690-15	60.641	0.20762			0.77478	0.86414	NaN	1	0	Median	85311000	49884000	35428000	14177	986	13235	27811	67295;67296	67295		2	9606
TISAVGEQLLPTVEHLQLELDQLK	1	0	Unmodified	2673.4589	0.45889684	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	10	0.816									1	1	1						23.798	23.798	3	1.5218E-15	19203	DP690-9	164.89	154.51			0.71667	0.89182	NaN	1	0	Median	49158000	30490000	18668000	14178	295	13236	27812;27813;27814	67297;67298;67299;67300;67301;67302;67303;67304	67304		8	9606
TISLCCWDSR	0	1	Unmodified	1296.5591	0.55909136	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	13	0													1				17.36	17.36	2	8.587E-05	11933	DP690-13	161.79	136.91			0.84071	1.0174	NaN	1	0	Median	64008000	35166000	28842000	14179	1114	13237	27815	67305;67306	67305		2	9606
TITGFQTHTTPVLLAHGER	0	1	Unmodified	2078.0909	0.090887278	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	3	0			2														14.622	14.622	3;4	0.00059906	8137	DP690-3	79.511	79.511			1.2664	1.4068	8.1023	2	0	Median	85316000	38888000	46428000	14180	1190	13238	27816;27817	67307;67308;67309;67310;67311;67312;67313	67312		7	9606
TITLEVEPSDTIENVK	1	0	Unmodified	1786.92	0.92002493	1009	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	10.5	3.54		1	1	1				1	1	1	7	3	2	1	1	1	18.032	18.032	2	3.4105E-47	12684	DP690-15	253.76	169.98			0.92776	1.0361	64.417	7	0	Median	976800000	479600000	497190000	14181	1009	13239	27818;27819;27820;27821;27822;27823;27824;27825;27826;27827;27828;27829;27830;27831;27832;27833;27834;27835;27836;27837;27838	67314;67315;67316;67317;67318;67319;67320;67321;67322;67323;67324;67325;67326;67327;67328;67329;67330;67331;67332;67333;67334;67335;67336;67337;67338;67339;67340;67341;67342;67343;67344;67345;67346;67347;67348;67349;67350;67351;67352;67353;67354;67355;67356;67357;67358;67359;67360;67361;67362;67363	67341		50	9606
TITMLDEQKEQLNR	1	1	Oxidation (M)	1733.8618	0.86179854	66	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	1	1	15	0															2		12.803	12.803	2;3	9.8239E-06	5755	DP690-15	130.15	102.1			0.63042	0.70857	NaN	1	0	Median	66885000	39895000	26990000	14182	66	13240	27839;27840	67364;67365;67366;67367	67366	78	4	9606
TITTLYVGGLGDTITETDLR	0	1	Unmodified	2138.1107	0.11067925	2242	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	0	0	13	0													2				21.066	21.066	2	6.3635E-12	16732	DP690-13	170.11	132.12			1.2471	1.4977	NaN	1	0	Median	7587300	2426700	5160500	14183	2242	13241	27841;27842	67368;67369;67370	67368		3	9606
TITYQAVPSEVPNEEPK	1	0	Unmodified	1900.9418	0.941823	2044	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	12	0												2					15.779	15.779	2	0.00090059	10086	DP690-12	92.906	73.94			1.0861	1.3058	NaN	1	0	Median	19561000	9993500	9567900	14184	2044	13242	27843;27844	67371;67372;67373;67374	67371		4	9606
TIVEEVQDGK	1	0	Unmodified	1116.5663	0.56626845	45	CON__Q04695;Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	no	no	0	0	0	13	0													1				13.531	13.531	2	0.00014087	6660	DP690-13	137.14	83.167		+	0.8727	0.9753	NaN	1	0	Median	184780000	99176000	85608000	14185	45	13243	27845	67375;67376	67375		2	9606
TIVFVETK	1	0	Unmodified	935.53278	0.53278348	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	12	0												1					15.044	15.044	2	0.057538	9006	DP690-12	133.6	51.295			0.83096	0.82031	NaN	1	0	Median	1319600000	705870000	613780000	14186	517	13244	27846	67377	67377		0	9606
TIVITSHPGQIVK	1	0	Unmodified	1391.8136	0.81364979	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	13	0													2				13.453	13.453	2;3	2.2169E-05	6574	DP690-13	163.45	140.9			0.83502	0.9262	2.0484	2	0	Median	658150000	356730000	301420000	14187	636	13245	27847;27848	67378;67379;67380;67381;67382;67383;67384;67385	67385		8	9606
TIVQLENEIYQIK	1	0	Unmodified	1589.8665	0.86647322	280	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	0	15	0															1		20.329	20.329	2	5.6787E-05	15571	DP690-15	156.16	111.97			1.0306	1.186	NaN	1	0	Median	3569600	1733900	1835600	14188	280	13246	27849	67386;67387;67388;67389	67386		4	9606
TIVYWGIGR	0	1	Unmodified	1063.5815	0.581465	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	10	0										1							18.285	18.285	2	0.053341	14344	DP690-10	66.429	23.346			1.0784	1.3507	NaN	1	0	Median	45362000	19509000	25853000	14189	858	13247	27850	67390;67391;67392	67392		3	9606
TIYPLADLLAR	0	1	Unmodified	1244.7129	0.71287311	323	O95425	SVIL	Supervillin	yes	yes	0	0	0	12	0												1					21.608	21.608	2	0.049291	17898	DP690-12	62.303	22.998			0.49149	0.60343	NaN	1	0	Median	3208300	2070400	1137900	14190	323	13248	27851	67393;67394	67393		2	9606
TKDDIIICEIGDVFK	2	0	Unmodified	1764.8968	0.89678707	2494	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	1	13	0													1				21.239	21.239	3	0.060065	17067	DP690-13	45.342	14.924			0.72381	0.81995	NaN	1	0	Median	31603000	17926000	13677000	14191	2494	13249	27852	67395;67396	67395		2	9606
TKDGQILPVPNVVVR	1	1	Unmodified	1633.9515	0.95154025	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	1	10.1	3.73				2					2			2	2		1		16.684	16.684	2;3	9.6274E-06	11036	DP690-13	146.67	138.83			0.7398	0.80144	15.133	8	0	Median	2521500000	1430300000	1091100000	14192	2298	13250	27853;27854;27855;27856;27857;27858;27859;27860;27861	67397;67398;67399;67400;67401;67402;67403;67404;67405;67406;67407;67408;67409;67410;67411;67412;67413;67414;67415;67416;67417;67418;67419;67420	67409		24	9606
TKDIEDVFYK	2	0	Unmodified	1256.6289	0.62886871	1136	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	1	15	0															1		15.285	15.285	2	0.0003586	9166	DP690-15	150.1	150.1			0.8691	0.99545	NaN	1	0	Median	73899000	39547000	34352000	14193	1136	13251	27862	67421;67422;67423;67424	67424		4	9606
TKDLLVDQTIEK	2	0	Unmodified	1401.7715	0.7715102	2524	Q9Y6R0	NUMBL	Numb-like protein	yes	yes	0	0	1	12	0												1					13.65	13.65	2	0.00091745	7083	DP690-12	120.57	0			0.77087	0.89611	NaN	1	0	Median	33079000	17069000	16010000	14194	2524	13252	27863	67425;67426;67427;67428	67427		4	9606
TKDLPVTEAVFSALVTGHAR	1	1	Unmodified	2111.1375	0.13750312	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	10	0										2							19.581	19.581	3;4	0.00019047	16231	DP690-10	99.603	87.543			0.95825	1.1915	NaN	1	0	Median	52031000	34190000	17841000	14195	732	13253	27864;27865	67429;67430	67429		2	9606
TKEAVLLLK	2	0	Unmodified	1013.6485	0.64848194	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	13	0													1				13.328	13.328	2	0.0028481	6373	DP690-13	137.14	78.154			0.90264	1.0098	NaN	1	0	Median	76528000	39302000	37226000	14196	681	13254	27866	67431;67432	67432		2	9606
TKEFEDAVR	1	1	Unmodified	1093.5404	0.54038805	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	0	1	3	0			1														10.844	10.844	2	0.02708	3229	DP690-3	122.52	24.718			NaN	NaN	NaN	0	0	Median	24979000	0	24979000	14197	2061	13255	27867	67433;67434	67434		2	9606
TKENILEEFSK	2	0	Unmodified	1336.6874	0.68744622	176	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	1	11.7	0.471											1	2					16.082	16.082	2;3	3.679E-07	10504	DP690-12	175.49	99.39			0.91194	1.0584	1.2292	2	0	Median	161720000	117360000	44355000	14198	176	13256	27868;27869;27870	67435;67436;67437;67438;67439;67440	67440		6	9606
TKENVNATENCISAVGK	2	0	Unmodified	1833.8891	0.88907593	82	O00410	IPO5	Importin-5	yes	yes	0	0	1	3	0			2														12.439	12.439	2;3	7.7875E-07	5292	DP690-3	160.48	108.5			1.1083	1.1877	NaN	1	0	Median	53553000	26974000	26579000	14199	82	13257	27871;27872	67441;67442;67443;67444;67445;67446	67446		6	9606
TKEQILEEFSK	2	0	Unmodified	1350.7031	0.70309628	207	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	1	12	0												1					15.034	15.034	2	8.4362E-05	9034	DP690-12	189.17	189.17			1.0194	1.1691	NaN	1	0	Median	59518000	28615000	30903000	14200	207	13258	27873	67447;67448;67449	67447		3	9606
TKETSVNWCLADGYDLEILDGTR	1	1	Unmodified	2655.2486	0.24864607	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	11	0											1						20.68	20.68	3	1.8819E-06	17556	DP690-11	130.3	130.3			0.79503	0.93422	NaN	1	0	Median	93028000	51455000	41573000	14201	897	13259	27874	67450;67451;67452;67453	67451		4	9606
TKEYTACELMNIYK	2	0	Oxidation (M)	1778.8219	0.82190756	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	1	1	8	4				1								1					15.132	15.132	3	0.00032935	9144	DP690-12	102.39	83.401			0.80235	0.86014	15.075	2	0	Median	296480000	152340000	144140000	14202	2210	13260	27875;27876	67454;67455;67456;67457;67458;67459	67454	2687	6	9606
TKEYTACELMNIYK	2	0	Unmodified	1762.827	0.82699294	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	1	12	0												4					17.126	17.126	2;3	1.5716E-05	11971	DP690-12	181.98	151.64			0.57351	0.6608	NaN	1	0	Median	202110000	27892000	174220000	14203	2210	13260	27877;27878;27879;27880	67460;67461;67462;67463;67464;67465	67460		6	9606
TKFETEQALR	1	1	Unmodified	1221.6354	0.63535107	45	CON__Q04695;Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	no	no	0	0	1	13	0													1				11.439	11.439	2	7.8452E-05	3910	DP690-13	200.86	136.59		+	0.77588	0.87976	NaN	1	0	Median	95717000	52153000	43564000	14204	45	13261	27881	67466;67467;67468;67469;67470;67471;67472;67473	67466		8	9606
TKFPAEQYYR	1	1	Unmodified	1301.6404	0.64043645	1340	Q15631	TSN	Translin	yes	yes	0	0	1	7	0							1										13.352	13.352	3	0.00017801	6342	DP690-7	100.82	63.866			0.52761	0.55609	NaN	1	0	Median	39473000	17312000	22161000	14205	1340	13262	27882	67474;67475	67475		2	9606
TKFTIENVTR	1	1	Unmodified	1207.6561	0.65608651	2205	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	0	0	1	15	0															1		13.49	13.49	2	0.012734	6769	DP690-15	93.649	65.444			0.98346	1.1453	NaN	1	0	Median	21859000	10862000	10997000	14206	2205	13263	27883	67476;67477	67477		2	9606
TKGFHTTIDIGVK	2	0	Unmodified	1415.7773	0.77726428	1330	Q15417	CNN3	Calponin-3	yes	yes	0	0	1	10	4						1								1			13.265	13.265	3	1.6839E-05	6469	DP690-14	144.51	101.7			0.79227	0.88204	NaN	1	0	Median	415720000	223190000	192530000	14207	1330	13264	27884;27885	67478;67479;67480;67481;67482;67483	67481		6	9606
TKGVDEVTIVNILTNR	1	1	Unmodified	1770.984	0.98396259	404	P07355	ANXA2	Annexin A2	yes	yes	0	0	1	12.7	2.98						2			1					11		1	22.634	22.634	2;3	1.0109999999999999E-22	13599	DP690-6	216.01	181.07			0.86018	0.97717	16.243	10	0	Median	2254800000	1257600000	997230000	14208	404	13265	27886;27887;27888;27889;27890;27891;27892;27893;27894;27895;27896;27897;27898;27899;27900	67484;67485;67486;67487;67488;67489;67490;67491;67492;67493;67494;67495;67496;67497;67498;67499;67500;67501;67502;67503;67504;67505;67506;67507;67508;67509;67510;67511;67512;67513;67514;67515;67516	67508		33	9606
TKIDCDNLEQYFIQQGGGPDKK	3	0	Unmodified	2553.217	0.21695201	1768	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	2	11	0											2						17.235	17.235	3;4	5.731E-10	12640	DP690-11	150.48	121.67			0.8824	0.95579	2.1577	2	0	Median	259110000	139690000	119410000	14209	1768	13266	27901;27902	67517;67518;67519;67520;67521	67517		5	9606
TKPADMVIEAYGHGQR	1	1	Oxidation (M)	1787.8625	0.86246725	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	1	1	7	0							2										12.426	12.426	3;4	8.7867E-05	5077	DP690-7	115.09	96.913			0.75668	0.79752	5.5608	2	0	Median	230540000	125020000	105520000	14210	296	13267	27903;27904	67522;67523;67524;67525;67526;67527;67528;67529;67530;67531	67525	311	10	9606
TKPADMVIEAYGHGQR	1	1	Unmodified	1771.8676	0.86755262	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	1	7	0							1										14.067	14.067	3	2.5003E-07	7218	DP690-7	150.12	129.89			0.85012	0.896	NaN	1	0	Median	149210000	72103000	77105000	14211	296	13267	27905	67532;67533;67534;67535;67536	67535		5	9606
TKPPLDHNASATDYK	2	0	Unmodified	1656.8107	0.81074925	323	O95425	SVIL	Supervillin	yes	yes	0	0	1	10	0										1							10.45	10.45	3	0.0020041	2871	DP690-10	77.068	49.396			0.4866	0.55426	NaN	1	0	Median	265630000	175480000	90148000	14212	323	13268	27906	67537	67537		1	9606
TKPVTGNLRPEEALQALTIYEGK	2	1	Unmodified	2527.3646	0.36460252	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	2	5.5	3.5		1							1								18.641	18.641	4	0.006173	13153	DP690-9	72.058	58.603			0.73116	0.7669	4.1882	2	0	Median	34480000	19531000	14949000	14213	1264	13269	27907;27908	67538;67539;67540;67541;67542	67539		5	9606
TKPYIQVDIGGGQTK	2	0	Unmodified	1603.857	0.85697116	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	4	0				2													14.159	14.159	2;3	8.3925E-06	7422	DP690-4	156	133.01			1.5307	1.6091	NaN	1	0	Median	163370000	61398000	101970000	14214	462	13270	27909;27910	67543;67544;67545;67546;67547;67548	67546		6	9606
TKSENGLEFTSSGSANTETTK	2	0	Unmodified	2188.0132	0.013150046	552	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	1	14.5	0.5														1	1		12.392	12.392	3	1.4977E-06	5275	DP690-14	128.4	112			0.93188	1.0552	19.489	2	0	Median	65039000	37785000	27254000	14215	552	13271	27911;27912	67549;67550;67551;67552;67553;67554	67551		6	9606
TKSESTSGATQFMPDPK	2	0	Oxidation (M)	1826.8356	0.83564337	1509	Q6UXV4	APOOL	MICOS complex subunit MIC27	yes	yes	0	1	1	15	0															1		10.753	10.753	3	0.021614	3275	DP690-15	54.073	38.681			0.89487	1.0241	NaN	1	0	Median	14101000	5980000	8121300	14216	1509	13272	27913	67555	67555	2196	1	9606
TKSQGGEPTYNVAVGR	1	1	Unmodified	1662.8325	0.83254733	656	P35080	PFN2	Profilin-2	yes	yes	0	0	1	8	0								2									11.817	11.817	2;3	1.1948E-17	4507	DP690-8	175.27	143.6			0.73841	0.85857	0.56058	2	0	Median	24112000	14332000	9779700	14217	656	13273	27914;27915	67556;67557;67558;67559;67560;67561;67562;67563	67558		8	9606
TKTPGPGAQSALR	1	1	Unmodified	1282.6993	0.69934831	971	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	16	0																1	10.312	10.312	3	0.040368	2751	DP690-16	113.54	77.206			0.69652	0.81898	NaN	1	0	Median	5348300	3117600	2230700	14218	971	13274	27916	67564	67564		0	9606
TKVEAFQTTISK	2	0	Unmodified	1351.7347	0.73473076	2384	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	1	7.33	0.471							2	1									12.787	12.787	2;3	3.6089E-09	5676	DP690-7	264.3	221.01			0.82068	0.87743	6.338	3	0	Median	305680000	170440000	135250000	14219	2384	13275	27917;27918;27919	67565;67566;67567;67568;67569;67570;67571;67572;67573;67574;67575;67576;67577;67578	67569		14	9606
TKVEATKNETSAPFK	3	0	Unmodified	1649.8625	0.86245047	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	2	9	0									1								10.343	10.343	3	0.08389	2578	DP690-9	43.69	17.56			0.68075	0.74709	NaN	1	0	Median	4261000	2466700	1794300	14220	408	13276	27920	67579	67579		1	9606
TKVENGEGTIPVESSDIVPTWDGIR	1	1	Unmodified	2698.345	0.34498929	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	9	0									1								18.806	18.806	3	0.0010883	13420	DP690-9	67.655	40.62			0.67813	0.78651	NaN	1	0	Median	9636500	5962700	3673800	14221	897	13277	27921	67580	67580		1	9606
TKVEPYSLTAQQSSLIR	1	1	Unmodified	1920.0316	0.031641065	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	1	11	0											1						15.63	15.63	3	0.00016732	10302	DP690-11	94.845	65.423			0.67323	0.77144	NaN	1	0	Median	133330000	74386000	58945000	14222	1932	13278	27922	67581;67582;67583;67584	67581		4	9606
TKYEHELALR	1	1	Unmodified	1258.667	0.66698555	40	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	1	8.67	6.13	1								1							1	11.204	11.204	3	0.010182	3175	DP690-1	117.02	82.921		+	NaN	NaN	NaN	0	0	Median	40264000	40264000	0	14223	40	13279	27923;27924;27925	67585;67586;67587;67588	67585		4	9606
TKYETELNLR	1	1	Unmodified	1265.6616	0.66156582	29	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	no	no	0	0	1	1	0	1																13.332	13.332	2	0.0034123	5112	DP690-1	143.73	79.023		+	NaN	NaN	NaN	0	0	Median	5070300	5070300	0	14224	29	13280	27926	67589	67589		1	9606
TLADAEDKCVIEGNNCTFVR	1	1	Unmodified	2311.0573	0.057280242	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	1	12	0												3					15.672	15.672	2;3	1.2768E-29	10028	DP690-12	246.96	183.36			0.92557	1.0011	NaN	1	0	Median	275870000	132930000	142940000	14225	2240	13281	27927;27928;27929	67590;67591;67592	67590		2	9606
TLADRLEGTK	1	1	Unmodified	1102.5982	0.59823728	1597	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	1	13	0													1				12.446	12.446	2	0.0052414	5181	DP690-13	106.4	41.147			0.71815	0.86374	NaN	1	0	Median	38270000	22444000	15827000	14226	1597	13282	27930	67593;67594	67593		2	9606
TLAESALQLLYTAK	1	0	Unmodified	1520.845	0.84500949	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															22.46	22.46	2	0.00010813	16171	DP690-2	122.33	122.33			1.1362	1.1191	NaN	1	0	Median	2471600	1264300	1207200	14227	2482	13283	27931	67595;67596;67597	67596		3	9606
TLAFSIPILMQLK	1	0	Oxidation (M)	1489.8578	0.85782279	2443	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	1	0	12	0												1					22.923	22.923	2	0.0027291	19365	DP690-12	95.573	67.492			0.83259	1.0108	NaN	1	0	Median	8543900	4741400	3802500	14228	2443	13284	27932	67598;67599;67600;67601;67602;67603	67601	2895	6	9606
TLAFVIPVVQALLSR	0	1	Unmodified	1625.9869	0.98686312	1667	Q8N8A6	DDX51	ATP-dependent RNA helicase DDX51	yes	yes	0	0	0	11	0											2						26.63	26.63	2	1.1737E-05	24732	DP690-11	148.18	142.46			0.82156	0.97801	NaN	1	0	Median	2685600	1481900	1203700	14229	1667	13285	27933;27934	67604;67605;67606;67607;67608;67609	67608		6	9606
TLAGLVVQLLQFQEDAFGK	1	0	Unmodified	2076.1255	0.12554145	1796	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	10	0										1							28.035	28.035	2	5.2548E-13	26205	DP690-10	176.4	115.77			NaN	NaN	NaN	0	0	Median	496880	496880	0	14230	1796	13286	27935	67610;67611;67612	67611		3	9606
TLALELAPK	1	0	Unmodified	954.57498	0.57498264	1195	Q13268	DHRS2	Dehydrogenase/reductase SDR family member 2, mitochondrial	yes	yes	0	0	0	11	4							1								1		16.484	16.484	2	0.0066504	10650	DP690-15	93.143	54.983			0.80711	0.85476	24.386	2	0	Median	603910000	359540000	244370000	14231	1195	13287	27936;27937	67613;67614;67615;67616;67617;67618;67619;67620	67616		8	9606
TLAPTWEELSK	1	0	Unmodified	1273.6554	0.65541781	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	5	0					2												14.538	14.538	2	0.0041628	11307	DP690-5	89.827	66.507			1.3562	1.3521	NaN	1	0	Median	120930000	25139000	95791000	14232	1675	13288	27938;27939	67621;67622;67623;67624;67625;67626	67624		6	9606
TLAQLNPESSLFIIASK	1	0	Unmodified	1831.0091	0.0091147084	396	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	4	0				1													21.643	21.643	2	2.6678E-06	16563	DP690-4	137.62	122.24			1.2585	1.3434	NaN	1	0	Median	2068500	929740	1138800	14233	396	13289	27940	67627;67628;67629;67630	67627		4	9606
TLASAGGPDNLVLLNPEK	1	0	Unmodified	1807.968	0.96797818	671	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	11	0											1						18.762	18.762	2	0.00028249	14764	DP690-11	136.17	76.75			NaN	NaN	NaN	0	0	Median	20889000	20889000	0	14234	671	13290	27941	67631;67632;67633	67631		3	9606
TLATDILMGVLK	1	0	Unmodified	1273.7316	0.73155964	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	11	0											1						23.703	23.703	2	0.00029454	21376	DP690-11	161.27	161.27			1.0757	1.321	NaN	1	0	Median	20378000	9975900	10402000	14235	161	13291	27942	67634;67635;67636;67637;67638	67635		5	9606
TLATDILMGVLK	1	0	Oxidation (M)	1289.7265	0.72647426	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	8.33	3.54			1	1					1		2	1					22.838	22.838	2	0.00010599	18508	DP690-3	126.31	102.32			1.0216	1.1665	10.878	4	0	Median	34867000	17155000	17712000	14236	161	13291	27943;27944;27945;27946;27947;27948	67639;67640;67641;67642;67643;67644;67645;67646;67647;67648;67649;67650	67648	183	12	9606
TLATLSENNMEAK	1	0	Oxidation (M)	1436.6817	0.68170891	2106	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	yes	yes	0	1	0	15	0															1		12.561	12.561	2	0.00020542	5460	DP690-15	140.78	79.618			0.84783	1.0002	NaN	1	0	Median	19979000	11471000	8507800	14237	2106	13292	27949	67651;67652;67653;67654;67655	67652	2616	5	9606
TLAYLLPAIVHINHQPYLER	0	1	Unmodified	2360.3005	0.30048612	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11.2	0.687										1	3	2					20.509	20.509	3;4	2.1592E-12	15821	DP690-11	170.16	154.27			0.64486	0.74075	24.721	6	0	Median	1040799999.9999999	606700000	434090000	14238	1793	13293	27950;27951;27952;27953;27954;27955	67656;67657;67658;67659;67660;67661;67662;67663;67664;67665;67666;67667;67668;67669;67670;67671;67672;67673	67659		17	9606
TLCLEVVLCR	0	1	Unmodified	1261.6523	0.65226346	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									2								19.419	19.419	2	0.00016058	14049	DP690-9	133.86	97.306			0.9136	1.1307	NaN	1	0	Median	21174000	11641000	9533100	14239	1046	13294	27956;27957	67674;67675;67676;67677;67678;67679	67675		6	9606
TLDDGFFPFIILDAINDR	0	1	Unmodified	2081.047	0.046956778	801	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	10	0										1							27.646	27.646	2	0.064274	25882	DP690-10	80.905	52.852			NaN	NaN	NaN	0	0	Median	937500	0	937500	14240	801	13295	27958	67680	67680		1	9606
TLDGIFSEQVAMGYSHSLVIAR	0	1	Oxidation (M)	2409.1998	0.19984538	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	1	0	11.5	1.5									1			2	1				19.982	19.982	2;3	7.5964E-07	15847	DP690-12	138.03	111.67			1.0036	1.27	4.8296	3	0	Plateau	183750000	95933000	87813000	14241	2298	13296	27959;27960;27961;27962	67681;67682;67683;67684;67685;67686;67687;67688;67689;67690	67683	2752	10	9606
TLDGIFSEQVAMGYSHSLVIAR	0	1	Unmodified	2393.2049	0.20493076	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	9	0									1								20.744	20.744	3	0.076685	15875	DP690-9	32.548	17.778			1.253	1.5701	NaN	1	0	Median	5916500	2517300	3399200	14242	2298	13296	27963	67691	67691		1	9606
TLDLPIYVTR	0	1	Unmodified	1189.6707	0.67067394	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			3														19.159	19.159	2	6.8727E-05	14087	DP690-3	166.09	74.189			2.0113	2.3043	NaN	1	0	Median	22947000	4242700	18704000	14243	878	13297	27964;27965;27966	67692;67693;67694;67695	67693		4	9606
TLDLSNNQLSEIPAELADCPK	1	0	Unmodified	2327.1315	0.13149104	1645	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	12	0												1					20.898	20.898	2	0.0017941	16987	DP690-12	127.66	88.865			NaN	NaN	NaN	0	0	Median	0	0	0	14244	1645	13298	27967	67696	67696		1	9606
TLDPDPAIR	0	1	Unmodified	996.52401	0.52400971	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1														13.794	13.794	2	0.0098049	7023	DP690-3	89.752	55.663			0.95041	1.064	NaN	1	0	Median	35537000	19403000	16135000	14245	892	13299	27968	67697;67698;67699;67700	67698		4	9606
TLDQISDADNIPGLLVLK	1	0	Unmodified	1924.0517	0.051707805	1498	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	10	0										1							22.116	22.116	2	0.00015946	19643	DP690-10	143.94	123.35			0.76511	0.93467	NaN	1	0	Median	25916000	14701000	11215000	14246	1498	13300	27969	67701;67702	67702		2	9606
TLDSALFYQDK	1	0	Unmodified	1299.6347	0.63468237	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															17.446	17.446	2	9.5925E-05	10621	DP690-2	140.49	104.15			0.9816	0.98919	NaN	1	0	Median	11836000	6145000	5690800	14247	2418	13301	27970	67703;67704;67705;67706	67703		4	9606
TLDVFNIILAR	0	1	Unmodified	1273.7394	0.73942221	1519	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	5.5	3.5		1							1								23.364	23.364	2	0.003112	17031	DP690-2	91.867	45.477			0.95629	0.97827	NaN	1	0	Median	1468500	712840	755660	14248	1519	13302	27971;27972	67707;67708;67709	67708		3	9606
TLEEAVGNIVK	1	0	Unmodified	1171.6449	0.64485312	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	11	0											1						17.431	17.431	2	0.0022318	12980	DP690-11	96.034	32.615			1.0335	1.2494	NaN	1	0	Median	86990000	40991000	45999000	14249	2515	13303	27973	67710;67711	67711		2	9606
TLEEDEEELFK	1	0	Unmodified	1380.6297	0.62965657	741	P43487	RANBP1	Ran-specific GTPase-activating protein	yes	yes	0	0	0	11	4							1								1		18.99	18.99	2	0.00011591	13279	DP690-7	136.99	81.877			1.0023	1.127	8.6107	2	0	Median	71565000	37404000	34161000	14250	741	13304	27974;27975	67712;67713;67714;67715;67716	67715		5	9606
TLEEEAKTHEAQIQEMR	1	1	Oxidation (M)	2057.9688	0.96878281	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	2	0		2															13.485	13.485	3;4	0.0059806	5951	DP690-2	65.467	26.264			1.214	1.195	4.4284	2	0	Median	36515000	15966000	20549000	14251	668	13305	27976;27977	67717;67718;67719;67720	67720	970	4	9606
TLEEGHDFIQEFPGSPAFAALTSIAQK	1	0	Unmodified	2903.4341	0.43413865	2509	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	yes	yes	0	0	0	7	0							1										22.545	22.545	3	2.0725E-05	17593	DP690-7	108.13	97.319			0.85351	0.9255	NaN	1	0	Median	7470900	4073200	3397700	14252	2509	13306	27978	67721;67722;67723;67724	67724		4	9606
TLEGELHDLR	0	1	Unmodified	1181.6041	0.60405094	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.7	0.471											1	2					15.03	15.03	2;3	0.00014186	9489	DP690-11	115.78	85.212			1.1244	1.3356	56.533	3	0	Median	148680000	72819000	75858000	14253	359	13307	27979;27980;27981	67725;67726;67727;67728;67729;67730;67731;67732;67733	67728		9	9606
TLEGELHDLRGQVAK	1	1	Unmodified	1664.8846	0.8845829	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	12	0												1					15.378	15.378	4	0.0002974	9587	DP690-12	98.368	71.587			0.77464	0.95134	NaN	1	0	Median	55496000	26193000	29303000	14254	359	13308	27982	67734	67734		1	9606
TLEGQAQETAVAQR	0	1	Unmodified	1500.7532	0.75323437	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	9.25	0.433									3	1							13.144	13.144	2	0.0039391	6037	DP690-9	127.51	69.656			NaN	NaN	NaN	0	0	Median	17275000	17275000	0	14255	1602	13309	27983;27984;27985;27986	67735;67736;67737;67738;67739	67739		5	9606
TLEGVITR	0	1	Unmodified	887.50763	0.50763136	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	10	0										1							13.967	13.967	2	0.04605	8034	DP690-10	98.523	37.735			NaN	NaN	NaN	0	0	Median	62082000	0	62082000	14256	1794	13310	27987	67740;67741	67740		2	9606
TLELQGLINDLQR	0	1	Unmodified	1511.8308	0.83075641	503	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	0	1																21.642	21.642	2	0.0059723	13421	DP690-1	110.66	75.907			NaN	NaN	NaN	0	0	Median	381470	381470	0	14257	503	13311	27988	67742	67742		1	9606
TLENQSHETLER	0	1	Unmodified	1455.6954	0.69538514	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										2							10.692	10.692	2;3	1.2541E-05	3211	DP690-10	123.62	79.984			0.76049	0.89615	15.444	2	0	Median	600480000	333170000	267300000	14258	781	13312	27989;27990	67743;67744;67745;67746;67747;67748	67743		6	9606
TLENQSHETLERENQECPR	0	2	Unmodified	2369.0666	0.066599375	781	P48681	NES	Nestin	yes	yes	0	0	1	10	0										2							11.258	11.258	3;4	0.00029525	4126	DP690-10	92.773	81.472			0.76508	0.91125	6.599	2	0	Median	226970000	124580000	102390000	14259	781	13313	27991;27992	67749;67750;67751	67751		3	9606
TLEPVKPPTVPNDYMTSPAR	1	1	Oxidation (M)	2228.1147	0.11471877	1636	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	1	1	8	4				1								1					15.011	15.011	3	4.9562E-05	8529	DP690-4	113.23	80.928			0.57623	0.69391	23.392	2	0	Median	46889000	27859000	19030000	14260	1636	13314	27993;27994	67752;67753;67754;67755;67756	67756	2274	5	9606
TLEPYILPFMFYNDVK	1	0	Oxidation (M)	2004.9907	0.99068745	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	1	0	10	0										1							23.262	23.262	2	0.0015703	21018	DP690-10	95.428	70.194			0.62086	0.75875	NaN	1	0	Median	26443000	16245000	10198000	14261	13	13315	27995	67757;67758;67759	67758	16	3	9606
TLEPYILPFMFYNDVKK	2	0	Unmodified	2117.0907	0.090735848	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							22.546	22.546	3	0.0093762	20075	DP690-10	86.772	51.015			NaN	NaN	NaN	0	0	Median	3242000	0	3242000	14262	13	13316	27996	67760	67760		1	9606
TLEPYILPFMFYNDVKK	2	0	Oxidation (M)	2133.0857	0.08565047	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	1	1	10	0										1							21.255	21.255	3	0.01093	18423	DP690-10	89.358	69.188			NaN	NaN	NaN	0	0	Median	0	0	0	14263	13	13316	27997	67761	67761	16	1	9606
TLESQAVETEK	1	0	Unmodified	1233.6089	0.60886155	2241	Q9NVX2	NLE1	Notchless protein homolog 1	yes	yes	0	0	0	13	0													1				12.23	12.23	2	0.0050533	4980	DP690-13	120.09	65.933			NaN	NaN	NaN	0	0	Median	12305000	0	12305000	14264	2241	13317	27998	67762;67763	67762		2	9606
TLESSIQGLR	0	1	Unmodified	1102.5982	0.59823728	1786	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	yes	yes	0	0	0	14	0														1			16.109	16.109	2	8.8509E-05	10389	DP690-14	157.68	79.161			0.77566	0.93623	NaN	1	0	Median	61234000	31443000	29792000	14265	1786	13318	27999	67764;67765;67766;67767	67765		4	9606
TLETVPLER	0	1	Unmodified	1056.5815	0.58152458	563	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	14	0														2			14.632	14.632	2	0.00034871	8376	DP690-14	157.68	75.893			1.213	1.4125	NaN	1	0	Median	174550000	81272000	93282000	14266	563	13319	28000;28001	67768;67769;67770;67771;67772;67773	67770		6	9606
TLEVVSPSQSVTGSAGHTPYYQSPTDEK	1	0	Unmodified	2964.3989	0.39887536	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	10	0										1							15.759	15.759	3	3.2848E-05	10709	DP690-10	80.944	64.976			0.54135	0.66952	NaN	1	0	Median	61997000	43309000	18687000	14267	763	13320	28002	67774	67774		1	9606
TLFATEDALEVR	0	1	Unmodified	1363.6983	0.69834526	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						18.462	18.462	2	5.7736E-05	14333	DP690-11	130.94	93.384			1.0917	1.3093	NaN	1	0	Median	111780000	51825000	59958000	14268	65	13321	28003	67775;67776;67777;67778	67775		4	9606
TLFAYEGTNEDELTFK	1	0	Unmodified	1876.8731	0.87307474	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	11	0											1						19.698	19.698	2	3.8442E-06	16237	DP690-11	136.93	119.8			1.1702	1.4208	NaN	1	0	Median	39831000	20017000	19814000	14269	2501	13322	28004	67779	67779		1	9606
TLFAYEGTNEDELTFKEGEIIHLISK	2	0	Unmodified	2996.5019	0.50188386	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	1	11	0											1						21.219	21.219	4	0.0014331	18299	DP690-11	57.922	34.009			0.90427	1.0612	NaN	1	0	Median	54052000	28693000	25360000	14270	2501	13323	28005	67780;67781	67780		2	9606
TLFGVLYEVYSSSAGPAVR	0	1	Unmodified	2015.0364	0.036392091	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	10	0										1							24.202	24.202	2	6.8994E-23	22156	DP690-10	225.79	184.55			0.66642	0.83427	NaN	1	0	Median	8647400	5259900	3387500	14271	1282	13324	28006	67782;67783;67784;67785	67782		4	9606
TLFLELIR	0	1	Unmodified	1003.6066	0.60661712	1863	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	12	0												2					21.229	21.229	2	0.00042988	17406	DP690-12	143.11	66.26			0.86266	1.0129	NaN	1	0	Median	107600000	63866000	43732000	14272	1863	13325	28007;28008	67786;67787	67786		1	9606
TLFPGTDHIDQLK	1	0	Unmodified	1483.7671	0.76709352	1357	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	0	6	0						1											16.421	16.421	3	0.0027188	9906	DP690-6	76.24	51.118			0.89447	1.0204	NaN	1	0	Median	8207100	4594400	3612600	14273	1357	13326	28009	67788	67788		1	9606
TLFPLIEAK	1	0	Unmodified	1030.6063	0.60628277	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	7	4			1								1						19.509	19.509	2	0.0066504	14452	DP690-3	93.143	45.486			1.5375	1.7334	91.387	2	0	Median	129670000	62182000	67489000	14274	480	13327	28010;28011	67789;67790;67791;67792;67793;67794;67795;67796	67794		8	9606
TLFQPQTGAYQTLAK	1	0	Unmodified	1665.8726	0.87262123	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	7	4			1								1						17.204	17.204	2	1.1698E-05	12621	DP690-11	171.67	141.9			0.80751	0.88106	8.1426	2	0	Median	254730000	137830000	116900000	14275	883	13328	28012;28013	67797;67798;67799;67800;67801;67802	67799		6	9606
TLFSNIVLSGGSTLFK	1	0	Unmodified	1682.9243	0.92432245	942	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	14	0														1			22.982	22.982	2	5.4551E-07	19286	DP690-14	155.86	155.86			0.82964	0.98608	NaN	1	0	Median	15818000	8095900	7721600	14276	942	13329	28014	67803;67804;67805;67806;67807	67804		5	9606
TLFSTHYHSLVEDYSQNVAVR	0	1	Unmodified	2465.1975	0.19753719	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	10	0										1							17.351	17.351	4	1.0065E-06	12897	DP690-10	115.34	97.516			0.79987	0.97114	NaN	1	0	Median	172430000	92753000	79679000	14277	858	13330	28015	67808;67809;67810;67811	67810		4	9606
TLFVLNVPPYCTEESLSR	0	1	Unmodified	2124.0561	0.056141256	2460	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	14	0														1			20.974	20.974	2	4.1792E-07	16836	DP690-14	143.05	113.69			1.0593	1.303	NaN	1	0	Median	13831000	8393600	5437400	14278	2460	13331	28016	67812	67812		1	9606
TLGECGFTSQTAR	0	1	Unmodified	1426.6511	0.65107749	1328	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	0	8	0								1									13.728	13.728	2	0.00021123	6658	DP690-8	150.04	95.435			NaN	NaN	NaN	0	0	Median	46248000	0	46248000	14279	1328	13332	28017	67813;67814	67813		2	9606
TLGILGLGR	0	1	Unmodified	898.56	0.56000128	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	6.5	4.43	1			2	1							1	1				17.338	17.338	2	0.0010098	13006	DP690-4	125.81	67.21			1.3594	1.0366	17.508	4	0	Linear	233660000	136430000	97234000	14280	167	13333	28018;28019;28020;28021;28022;28023	67815;67816;67817;67818;67819;67820;67821;67822;67823;67824;67825;67826;67827	67820		13	9606
TLGLYGKDQQEAALVDMVNDGVEDLR	1	1	Oxidation (M)	2864.3862	0.38620218	432	P09211	GSTP1	Glutathione S-transferase P	yes	yes	0	1	1	7	0							1										19.837	19.837	3	0.03261	14388	DP690-7	62.028	42.885			NaN	NaN	NaN	0	0	Median	2853000	0	2853000	14281	432	13334	28024	67828	67828	502	1	9606
TLGTPTQPGSTPR	0	1	Unmodified	1311.6783	0.67827852	1700	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	0	0	0	15	0.816														1	1	1	11.664	11.664	2	3.5368E-05	4147	DP690-14	128.88	95.988			0.66532	0.78554	9.5533	2	0	Median	122400000	72268000	50133000	14282	1700	13335	28025;28026;28027	67829;67830;67831;67832;67833;67834;67835	67829		7	9606
TLGVDLVALATR	0	1	Unmodified	1227.7187	0.71868677	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															20.82	20.82	2	3.5533E-05	14387	DP690-2	173.24	113.3			1.385	1.4439	NaN	1	0	Median	23988000	9881600	14106000	14283	602	13336	28028	67836;67837;67838;67839	67836		4	9606
TLHLPVSTTLSDVLDR	0	1	Unmodified	1765.9574	0.95741349	2193	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	2	0		1															19.681	19.681	3	0.048637	13163	DP690-2	66.673	28.495			NaN	NaN	NaN	0	0	Median	0	0	0	14284	2193	13337	28029	67840	67840		1	9606
TLHNLVIQYASQGR	0	1	Unmodified	1598.8529	0.85288884	1135;2086	Q07866;Q9H0B6	KLC1;KLC2	Kinesin light chain 1;Kinesin light chain 2	no	no	0	0	0	4	0				1													15.852	15.852	3	0.013667	9680	DP690-4	59.673	45.163			0.68871	0.80254	NaN	1	0	Median	12227000	7156300	5070400	14285	1135;2086	13338	28030	67841;67842	67841		2	9606
TLHPDLGTDKDKEQWK	3	0	Unmodified	1909.9534	0.95339074	352	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	2	6	0						1											11.967	11.967	4	0.00014641	4553	DP690-6	120.21	100.82			1.5236	1.5231	NaN	1	0	Median	23583000	9921700	13661000	14286	352	13339	28031	67843;67844;67845;67846	67846		4	9606
TLHSDDEGTVLDDSR	0	1	Unmodified	1658.7384	0.73837217	67	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	6	0						1											12.797	12.797	3	3.0518E-05	5402	DP690-6	123.29	103.61			1.0527	1.2086	NaN	1	0	Median	12057000	6484000	5572600	14287	67	13340	28032	67847;67848	67847		2	9606
TLHTDILFGLIK	1	0	Unmodified	1369.7969	0.79693709	197	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	11	0											1						20.237	20.237	3	0.027611	16849	DP690-11	76.165	40.642			NaN	NaN	NaN	0	0	Median	7652800	0	7652800	14288	197	13341	28033	67849;67850	67849		2	9606
TLIDDDNPPVSFVK	1	0	Unmodified	1558.7879	0.78788854	957	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	14	0														1			18.334	18.334	2	0.034389	13748	DP690-14	62.408	35.259			0.67257	0.80358	NaN	1	0	Median	19543000	8485800	11058000	14289	957	13342	28034	67851	67851		1	9606
TLIINLPGSK	1	0	Unmodified	1054.6386	0.63864553	2191	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	yes	yes	0	0	0	3	0			1														17.827	17.827	2	0.00019227	12391	DP690-3	128.6	107.66			0.76144	0.81534	NaN	1	0	Median	22356000	11670000	10687000	14290	2191	13343	28035	67852;67853;67854;67855	67854		4	9606
TLIQNCGASTIR	0	1	Unmodified	1332.682	0.68198369	791	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	12	0												1					13.544	13.544	2	0.00047251	6978	DP690-12	112.85	69.076			1.0128	1.2011	NaN	1	0	Median	46592000	21964000	24628000	14291	791	13344	28036	67856	67856		1	9606
TLLADQGEIR	0	1	Unmodified	1114.5982	0.59823728	291	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	11	0											1						14.62	14.62	2	0.014886	8831	DP690-11	76.827	46.029			2.0404	2.4641	NaN	1	0	Median	102300000	55830000	46468000	14292	291	13345	28037	67857;67858	67857		2	9606
TLLATVDETIPLLPASTHR	0	1	Unmodified	2047.1314	0.13135511	1117	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	7	4			1								1						20.569	20.569	3	2.3683E-05	17356	DP690-11	121.74	99.712			0.86702	1.0155	4.7248	2	0	Median	102250000	59784000	42469000	14293	1117	13346	28038;28039	67859;67860;67861	67859		3	9606
TLLDIDNTR	0	1	Unmodified	1059.556	0.55603811	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	7.38	5.45	1	1	1	1					2						1	1	16.148	16.148	2	5.5615E-10	10007	DP690-4	176.44	91.529		+	NaN	NaN	NaN	0	0	Median	319660000	319660000	0	14294	667	13347	28040;28041;28042;28043;28044;28045;28046;28047	67862;67863;67864;67865;67866;67867;67868;67869;67870;67871;67872;67873;67874;67875	67872		14	9606
TLLDILADGTILK	1	0	Unmodified	1384.8177	0.81773211	2232	Q9NVH0	EXD2	Exonuclease 3'-5' domain-containing protein 2	yes	yes	0	0	0	12	0												1					24.299	24.299	2	0.0016076	20833	DP690-12	96.015	79.877			0.83	1.0033	NaN	1	0	Median	2243700	1198500	1045200	14295	2232	13348	28048	67876;67877;67878;67879;67880;67881;67882;67883	67877		8	9606
TLLEAENSR	0	1	Unmodified	1031.5247	0.52473799	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										2							12.552	12.552	2	0.010848	5932	DP690-10	148.99	77.109			NaN	NaN	NaN	0	0	Median	0	0	0	14296	781	13349	28049;28050	67884;67885	67885		2	9606
TLLEEEYFR	0	1	Unmodified	1198.587	0.58700389	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	6.5	3.5			1							1							18.05	18.05	2	0.00094522	12655	DP690-3	126.52	99.268			0.96857	1.1438	20.453	2	0	Median	165940000	89598000	76343000	14297	858	13350	28051;28052	67886;67887;67888;67889	67888		4	9606
TLLEGEESR	0	1	Unmodified	1032.5088	0.50875357	369;25	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	9	4.82	1		1				1		1	1			2			1	12.621	12.621	2	1.319E-06	5250	DP690-9	171.53	112.61		+	NaN	NaN	NaN	0	0	Median	729290000	729290000	0	14298	369;25	13351	28053;28054;28055;28056;28057;28058;28059;28060	67890;67891;67892;67893;67894;67895;67896;67897;67898;67899;67900;67901;67902;67903;67904	67904		15	9606
TLLEGSGLESIISIIHSSLAEPR	0	1	Unmodified	2421.3115	0.31150432	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															25.231	25.231	3	1.5056E-06	18471	DP690-2	131.13	116.98			0.75076	0.76724	NaN	1	0	Median	1083300	615670	467590	14299	789	13352	28061	67905;67906;67907;67908;67909;67910	67905		6	9606
TLLFTFNVPGSGNTYPK	1	0	Unmodified	1854.9516	0.95159983	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	12	0												1					21.08	21.08	2	7.3178E-05	17177	DP690-12	123.26	95.828			0.57222	0.68912	NaN	1	0	Median	17173000	10900000	6272400	14300	1814	13353	28062	67911;67912;67913;67914	67912		4	9606
TLLGFFLAK	1	0	Unmodified	1008.6008	0.60080346	440	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	10	0										1							22.116	22.116	2	0.031478	19649	DP690-10	73.248	73.248			0.72464	0.87848	NaN	1	0	Median	13083000	6503400	6579500	14301	440	13354	28063	67915;67916	67916		2	9606
TLLIDELNK	1	0	Unmodified	1057.6019	0.60192568	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	11	1										1		1					17.968	17.968	2	0.002596	13884	DP690-10	109.48	54.702			0.88844	1.047	14.849	2	0	Median	382610000	212440000	170170000	14302	2190	13355	28064;28065	67917;67918;67919;67920;67921;67922;67923	67920		7	9606
TLLLSLLATEIER	0	1	Unmodified	1470.8657	0.86574494	728	P42356	PI4KA	Phosphatidylinositol 4-kinase alpha	yes	yes	0	0	0	10	0										1							24.169	24.169	2	0.0010441	22201	DP690-10	102.53	102.53			0.83501	1.0312	NaN	1	0	Median	6166800	3181400	2985400	14303	728	13356	28066	67924;67925	67925		2	9606
TLLQGSGCLAGIYLEDTK	1	0	Unmodified	1937.9768	0.9768283	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								20.164	20.164	2	9.8404E-07	15088	DP690-9	141.06	95.236			0.66318	0.82965	NaN	1	0	Median	5353500	3468300	1885200	14304	1319	13357	28067	67926;67927;67928	67926		3	9606
TLLQGSGCLAGIYLEDTKEK	2	0	Unmodified	2195.1144	0.11438442	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10.2	0.898									1	4		1					18.554	18.554	2;3	2.5371E-23	13023	DP690-9	216.16	197.38			0.78373	0.92113	7.9748	3	0	Median	695380000	375900000	319480000	14305	1319	13358	28068;28069;28070;28071;28072;28073	67929;67930;67931;67932;67933;67934;67935;67936;67937;67938	67936		10	9606
TLLQVLGGTILESER	0	1	Unmodified	1627.9145	0.91448604	1565	Q86U38	NOP9	Nucleolar protein 9	yes	yes	0	0	0	12	0												1					23.192	23.192	2	4.9008E-05	19717	DP690-12	125.36	107.99			0.78911	0.967	NaN	1	0	Median	4076600	2034100	2042500	14306	1565	13359	28074	67939;67940	67940		2	9606
TLLSESSSQSSK	1	0	Unmodified	1252.6147	0.61467521	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															11.546	11.546	2	9.1958E-05	3639	DP690-2	139.43	87.178			1.08	1.0875	NaN	1	0	Median	10313000	5234800	5078000	14307	2418	13360	28075	67941;67942;67943;67944	67943		4	9606
TLMAQSIYGGR	0	1	Oxidation (M)	1211.5969	0.59685707	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	5.5	3.5		1							1								13.939	13.939	2	0.0026247	7011	DP690-9	101.65	71.082			0.79542	0.9042	13.553	2	0	Median	28306000	15572000	12734000	14308	1264	13361	28076;28077	67945;67946;67947;67948	67948	1928	4	9606
TLMNLGGLAVAR	0	1	Oxidation (M)	1230.6754	0.67544174	690	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	11.5	4.03							1	1							1	1	16.563	16.563	2	0.00010055	10205	DP690-7	129.38	129.38			0.97735	1.0722	5.669	3	0	Median	240660000	117220000	123430000	14309	690	13362	28078;28079;28080;28081	67949;67950;67951;67952;67953;67954;67955;67956;67957;67958;67959;67960;67961	67958	998	13	9606
TLMNLGGLAVAR	0	1	Unmodified	1214.6805	0.68052712	690	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	7	0							1										18.772	18.772	2	0.00022546	13073	DP690-7	170.5	129.72			0.95189	1.081	NaN	1	0	Median	24335000	13148000	11187000	14310	690	13362	28082	67962;67963;67964;67965	67965		4	9606
TLNCMIGQMKHILAAEQKK	3	0	Oxidation (M)	2229.1432	0.1431989	90	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	1	2	12	0												1					10.698	10.698	5	0.0061304	3162	DP690-12	69.069	69.069			0.034813	0.037706	NaN	1	0	Median	677180000	657720000	19456000	14311	90	13363	28083	67966	67966	101	1	9606
TLNDELEIIEGMK	1	0	Oxidation (M)	1519.744	0.74397482	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	1	0	8	4				1								1					19.684	19.684	2	8.9944E-05	15437	DP690-12	131.42	98.419			0.95014	1.0828	34.262	2	0	Median	92905000	52843000	40062000	14312	461	13364	28084;28085	67967;67968;67969;67970;67971;67972;67973;67974;67975;67976	67968	537	10	9606
TLNDMRQEYEQLIAK	1	1	Oxidation (M)	1866.9146	0.9145624	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	6.5	2.5				1					1								16.042	16.042	2	0.067353	9797	DP690-9	94.191	51.389		+	NaN	NaN	NaN	0	0	Median	9533300	9533300	0	14313	667	13365	28086;28087	67977;67978	67978		2	9606
TLNEWDSR	0	1	Unmodified	1019.4672	0.46722311	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	12	0												1					13.606	13.606	2	0.058648	6911	DP690-12	144.38	67.317			1.0279	1.1548	NaN	1	0	Median	217770000	107880000	109890000	14314	154	13366	28088	67979	67979		0	9606
TLNEWSSQINPDLVR	0	1	Unmodified	1770.8901	0.89006221	777	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	0	7	0							1										18.6	18.6	2	4.7478E-07	12907	DP690-7	190.66	144.07			0.90195	1.0408	NaN	1	0	Median	15779000	7957600	7821600	14315	777	13367	28089	67980;67981	67980		2	9606
TLNNLYAEAEK	1	0	Unmodified	1264.6299	0.62993134	1550	Q7Z5G4	GOLGA7	Golgin subfamily A member 7	yes	yes	0	0	0	16	0																1	14.987	14.987	2	0.00011063	8538	DP690-16	133.89	104.23			0.74996	0.85143	NaN	1	0	Median	45274000	25564000	19710000	14316	1550	13368	28090	67982;67983;67984;67985	67984		4	9606
TLNPEHLGQGGVQR	0	1	Unmodified	1504.7746	0.77463852	48	CON__Q2UVX4			yes	yes	0	0	0	1	0	1																12.464	12.464	3	0.01977	4284	DP690-1	80.312	37.523		+	NaN	NaN	NaN	0	0	Median	1465600	1465600	0	14317	48	13369	28091	67986;67987	67986		2	
TLPAHSDPVSAVHFNR	0	1	Unmodified	1746.8802	0.88016622	957	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	14	0														1			13.436	13.436	4	0.0030064	6756	DP690-14	96.707	51.427			NaN	NaN	NaN	0	0	Median	43134000	43134000	0	14318	957	13370	28092	67988;67989	67989		2	9606
TLPLCVIGGDHK	1	0	Unmodified	1308.686	0.68600643	1699	Q8NFH4	NUP37	Nucleoporin Nup37	yes	yes	0	0	0	14	0														1			15.328	15.328	3	0.021865	9292	DP690-14	63.473	31.219			NaN	NaN	NaN	0	0	Median	17975000	17975000	0	14319	1699	13371	28093	67990;67991	67991		2	9606
TLPLFYGSIVR	0	1	Unmodified	1264.718	0.71795849	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	9.5	0.5									1	1							20.255	20.255	2	0.00019308	16995	DP690-10	152.34	125.01			0.78964	0.95993	5.9722	2	0	Median	252150000	134350000	117800000	14320	13	13372	28094;28095	67992;67993;67994;67995;67996;67997;67998;67999;68000	67992		9	9606
TLPLTGSTFHDQIAMLSHR	0	1	Oxidation (M)	2140.0735	0.073522654	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	11	0											2						17.221	17.221	3;4	4.4489E-05	12746	DP690-11	112.91	97.986			0.72422	0.8368	1.9939	2	0	Median	371570000	202970000	168600000	14321	897	13373	28096;28097	68001;68002;68003;68004;68005;68006;68007	68004	1395	7	9606
TLPQEPGKPQKDEVLR	2	1	Unmodified	1833.9949	0.99486163	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	2	9	0									2								11.804	11.804	3;4	0.0032785	4325	DP690-9	81.448	61.555			0.48858	0.52276	27.457	2	0	Median	20996000	13317000	7678900	14322	1048	13374	28098;28099	68008;68009;68010	68008		3	9606
TLQAGLSSNHVSHGEVLR	0	1	Unmodified	1903.9864	0.98642221	306	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	3	0			2														12.423	12.423	3;4	0.0025838	5170	DP690-3	69.148	69.148			1.4446	1.6345	9.8538	2	0	Median	23033000	11609000	11424000	14323	306	13375	28100;28101	68011;68012	68011		2	9606
TLQALQIPAAK	1	0	Unmodified	1152.6867	0.68665836	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	6	4		1								1							16.214	16.214	2	0.0010306	11252	DP690-10	106.42	106.42			0.97642	1.0879	33.036	2	0	Median	93866000	47871000	45995000	14324	766	13376	28102;28103	68013;68014;68015;68016	68013		4	9606
TLQEEVMEAMGIK	1	0	2 Oxidation (M)	1509.7055	0.70548082	1815	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	yes	yes	0	2	0	15	0															1		16.984	16.984	2	0.027184	11439	DP690-15	85.973	34.96			NaN	NaN	NaN	0	0	Median	2838800	2838800	0	14325	1815	13377	28104	68017	68017	2398;2399	1	9606
TLQEQLENGPNTQLAR	0	1	Unmodified	1810.9173	0.91733959	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	10.5	0.5										1	1						16.051	16.051	2	7.0377E-36	11076	DP690-10	239.48	187.09			NaN	NaN	NaN	0	0	Median	42823000	22367000	20456000	14326	2303	13378	28105;28106	68018;68019;68020;68021	68018		4	9606
TLQEVTQLSQEAQR	0	1	Unmodified	1629.8322	0.83221298	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	7	4			1								1						16.017	16.017	2	5.2474E-14	10010	DP690-3	221.6	169.21			0.80178	0.93874	20.906	2	0	Median	107990000	62769000	45223000	14327	713	13379	28107;28108	68022;68023;68024;68025;68026;68027;68028;68029	68028		8	9606
TLQGLQLDLPLEEETLSLPR	0	1	Unmodified	2264.2264	0.22637771	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	0	10	0										1							23.059	23.059	2	3.1695E-30	20813	DP690-10	233.62	208.5			0.70233	0.87959	NaN	1	0	Median	14077000	7751800	6325500	14328	1234	13380	28109	68030;68031;68032	68030		3	9606
TLQGTVSQAQER	0	1	Unmodified	1316.6684	0.66844211	2123	Q9H5N1	RABEP2	Rab GTPase-binding effector protein 2	yes	yes	0	0	0	4	0				1													11.979	11.979	2	0.020884	4627	DP690-4	97.456	54.858			NaN	NaN	NaN	0	0	Median	0	0	0	14329	2123	13381	28110	68033	68033		1	9606
TLQIFNIEMK	1	0	Oxidation (M)	1251.6533	0.65330932	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	1	0	2	0		1															18.522	18.522	2	0.0088936	11930	DP690-2	90.15	72.342			1.4969	1.5044	NaN	1	0	Median	7271500	2909800	4361700	14330	1075	13382	28111	68034;68035;68036	68035	1681	3	9606
TLQIFNIEMK	1	0	Unmodified	1235.6584	0.6583947	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	2	0		1															20.196	20.196	2	0.036525	13694	DP690-2	68.735	51.709			2.4521	2.4113	NaN	1	0	Median	1518700	375630	1143100	14331	1075	13382	28112	68037	68037		1	9606
TLQLDNNFEVK	1	0	Unmodified	1319.6721	0.67213051	2403	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	12	0												1					16.915	16.915	2	0.00012377	11658	DP690-12	135.43	97.342			0.75341	0.88049	NaN	1	0	Median	97714000	52661000	45053000	14332	2403	13383	28113	68038;68039;68040;68041	68041		4	9606
TLQTDSIDSFETQR	0	1	Unmodified	1639.7689	0.76894402	390	P06400	RB1	Retinoblastoma-associated protein	yes	yes	0	0	0	3	0			1														16.567	16.567	2	0.0018993	10826	DP690-3	109.72	84.504			NaN	NaN	NaN	0	0	Median	5410700	1753200	3657600	14333	390	13384	28114	68042;68043;68044	68044		3	9606
TLQTIALLGYLK	1	0	Unmodified	1332.8017	0.80168812	609	P28370	SMARCA1	Probable global transcription activator SNF2L1	yes	yes	0	0	0	11	0											1						21.715	21.715	2	5.3909E-05	18862	DP690-11	128.86	120.62			1.1738	1.4332	NaN	1	0	Median	24763000	11219000	13544000	14334	609	13385	28115	68045;68046	68045		2	9606
TLQYLSQGNVVFK	1	0	Unmodified	1495.8035	0.80347903	1051	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	yes	yes	0	0	0	15	0															1		17.996	17.996	2	0.005212	12697	DP690-15	95.81	63.204			1.3447	1.5728	NaN	1	0	Median	7040900	2351500	4689400	14335	1051	13386	28116	68047;68048	68047		2	9606
TLSALLLPAAGLDDVSLPVAPR	0	1	Unmodified	2188.2467	0.24671922	1575	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	0	10	0										1							23.587	23.587	2	1.7042E-29	21387	DP690-10	225.31	211.13			0.58273	0.73029	NaN	1	0	Median	13450000	8589600	4860500	14336	1575	13387	28117	68049;68050;68051;68052	68049		4	9606
TLSDYNIQK	1	0	Unmodified	1080.5451	0.54513908	1009	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	8.62	4.75	1	1	2	1		1		1	1	1	2	1	1	1	1	1	13.338	13.338	2	1.3616E-06	6213	DP690-4	171.38	99.155			1.008	1.1211	44.803	12	0	Median	2662000000	930860000	1731099999.9999998	14337	1009	13388	28118;28119;28120;28121;28122;28123;28124;28125;28126;28127;28128;28129;28130;28131;28132;28133	68053;68054;68055;68056;68057;68058;68059;68060;68061;68062;68063;68064;68065;68066;68067;68068;68069;68070;68071;68072;68073;68074;68075;68076;68077;68078;68079;68080;68081;68082;68083;68084;68085;68086;68087;68088;68089;68090;68091;68092;68093;68094	68084		42	9606
TLSEIVCPLDVK	1	0	Unmodified	1372.7272	0.72720254	2554				yes	yes	0	0	0	11	0											1						27.475	27.475	2	0.0013666	25427	DP690-11	101.54	101.54	+		0.89701	1.0936	NaN	1	0	Median	6515000	3452800	3062200	14338	2554	13389	28134	68095;68096;68097;68098;68099	68098		5	9606
TLSEVDYAPAGPAR	0	1	Unmodified	1445.7151	0.71505795	153	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	3	0			1														14.7	14.7	2	0.019959	8271	DP690-3	96.113	43.858			NaN	NaN	NaN	0	0	Median	7365200	7365200	0	14339	153	13390	28135	68100	68100		1	9606
TLSFGSDLNYATR	0	1	Unmodified	1443.6994	0.69940789	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	6	4		1								1							17.742	17.742	2	0.00011302	13508	DP690-10	123.11	92.548			1.0608	1.1922	17.026	2	0	Median	127520000	71122000	56394000	14340	1252	13391	28136;28137	68101;68102;68103	68102		3	9606
TLSGLEVSMVTAVPGR	0	1	Oxidation (M)	1631.8553	0.8552566	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	1	0	4	0				1													17.283	17.283	2	6.0026E-12	11412	DP690-4	201.38	164.96			0.77204	0.83078	NaN	1	0	Median	75044000	42667000	32377000	14341	353	13392	28138	68104;68105;68106;68107	68104	360	4	9606
TLSGLEVSMVTAVPGR	0	1	Unmodified	1615.8603	0.86034198	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	4	0				1													19.391	19.391	2	3.3006E-12	13982	DP690-4	202.44	202.44			0.72263	0.83829	NaN	1	0	Median	5883200	3435300	2447900	14342	353	13392	28139	68108;68109	68108		2	9606
TLSGMESYCVR	0	1	Oxidation (M)	1317.5693	0.56932169	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	1	0	8	4				1								1					12.855	12.855	2	0.0033153	5699	DP690-4	98.044	79.604			1.3493	1.5614	37.665	2	0	Median	62707000	23432000	39275000	14343	827	13393	28140;28141	68110;68111;68112;68113;68114;68115;68116;68117	68115	1252	8	9606
TLSLHYFEEPELR	0	1	Unmodified	1632.8148	0.814772	1153	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	10	0										1							17.929	17.929	3	0.010144	13801	DP690-10	82.34	37.649			NaN	NaN	NaN	0	0	Median	46050000	46050000	0	14344	1153	13394	28142	68118	68118		1	9606
TLSPTGNISSAPK	1	0	Unmodified	1271.6721	0.67213051	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	9	0									1								12.903	12.903	2	0.006202	5703	DP690-9	109.16	56.076			NaN	NaN	NaN	0	0	Median	11310000	11310000	0	14345	295	13395	28143	68119;68120	68119		2	9606
TLSSPSNRPSGETSVPPPPAVGR	0	2	Unmodified	2289.1713	0.17132244	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	1	8.75	3.34			1							1	2						13.281	13.281	3	0.00015816	6824	DP690-11	110.61	110.61			0.60077	0.74058	40.17	3	0	Plateau	172310000	104610000	67693000	14346	1755	13396	28144;28145;28146;28147	68121;68122;68123;68124;68125;68126;68127;68128;68129;68130;68131;68132	68124		12	9606
TLSVEPSQQLDTASTEETDPETSQPEPNRPSELDLR	0	2	Unmodified	3995.872	0.8719717	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	1	10	0										1							17.223	17.223	3	1.7404E-27	12775	DP690-10	177.24	171.14			0.67303	0.80161	NaN	1	0	Median	101830000	59672000	42158000	14347	1724	13397	28148	68133	68133		1	9606
TLSYLLPAIVHINHQPFLER	0	1	Unmodified	2360.3005	0.30048612	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	12	0												11					23.422	23.422	3;4	1.3668E-05	15646	DP690-12	122.19	122.19			0.73418	0.73507	16.739	5	0	Linear	517120000	301450000	215670000	14348	517	13398	28149;28150;28151;28152;28153;28154;28155;28156;28157;28158;28159	68134;68135;68136;68137;68138;68139;68140;68141;68142;68143;68144;68145;68146	68135		13	9606
TLSYLLPLLQR	0	1	Unmodified	1315.7864	0.7863724	2220	Q9NUL7	DDX28	Probable ATP-dependent RNA helicase DDX28	yes	yes	0	0	0	12	0												1					21.98	21.98	2	0.0016078	18278	DP690-12	101.43	101.43			0.94272	1.1545	NaN	1	0	Median	4427000	2289800	2137300	14349	2220	13399	28160	68147;68148;68149	68147		3	9606
TLTAAAVSGAQPILSK	1	0	Unmodified	1526.8668	0.86680757	213	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	5	0					1												16.475	16.475	2	6.3204E-07	9933	DP690-5	149.41	149.41			0.88966	0.88896	NaN	1	0	Median	25684000	16349000	9335500	14350	213	13400	28161	68150;68151	68150		2	9606
TLTDEVNSPDSDRR	0	2	Unmodified	1603.7438	0.7437919	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	1	10	0										3							11.842	11.842	2;3	0.032579	4892	DP690-10	123.51	63.346			0.72288	0.86098	10.07	2	0	Median	490980000	299780000	191200000	14351	1710	13401	28162;28163;28164	68152;68153;68154	68154		3	9606
TLTDLLLR	0	1	Unmodified	943.57023	0.57023162	286	O76024	WFS1	Wolframin	yes	yes	0	0	0	9.5	0.5									1	1							19.735	19.735	2	0.0091083	16241	DP690-10	120.65	39.011			NaN	NaN	NaN	0	0	Median	37837000	37837000	0	14352	286	13402	28165;28166	68155;68156;68157	68155		3	9606
TLTGKTITLEVEPSDTIENVK	2	0	Unmodified	2287.2159	0.2158726	1009	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	1	3	0			1														17.126	17.126	3	0.00021675	11439	DP690-3	99.414	74.735			5.6105	6.059	NaN	1	0	Median	23448000	4575100	18873000	14353	1009	13403	28167	68158;68159	68158		2	9606
TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK	1	0	Unmodified	3057.5693	0.56925192	940	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	13	0													1				21.057	21.057	3	0.00011982	16781	DP690-13	88.108	53.089			NaN	NaN	NaN	0	0	Median	6071600	6071600	0	14354	940	13404	28168	68160	68160		1	9606
TLTLVDTGIGMTK	1	0	Unmodified	1348.7272	0.72720254	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	7	4			1								1						18.368	18.368	2	4.0299E-08	13001	DP690-3	199.33	0			1.0485	1.0787	NaN	1	0	Median	131240000	79745000	51496000	14355	416	13405	28169;28170	68161;68162;68163;68164;68165;68166	68166		6	9606
TLTPDQWAR	0	1	Unmodified	1086.5458	0.54580778	2109	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	0	0	0	8	0								1									15.121	15.121	2	0.0006395	8189	DP690-8	144.38	110.58			0.78415	0.82867	NaN	1	0	Median	60244000	33569000	26675000	14356	2109	13406	28171	68167;68168;68169;68170	68170		4	9606
TLTPSYYR	0	1	Unmodified	999.50255	0.50254598	2175	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	12.3	3.77							1								2		13.412	13.412	2	0.00017668	6410	DP690-7	152.47	50.827			NaN	NaN	NaN	0	0	Median	81108000	27923000	53185000	14357	2175	13407	28172;28173;28174	68171;68172;68173;68174;68175	68175		5	9606
TLTQGGVTYR	0	1	Unmodified	1094.572	0.57202253	1232	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	10	4						1								1			12.354	12.354	2	0.00044316	4883	DP690-6	120.31	82.173			0.88788	1.0286	12.664	2	0	Median	92212000	52962000	39250000	14358	1232	13408	28175;28176	68176;68177;68178;68179;68180;68181;68182;68183;68184;68185	68185		10	9606
TLTSCFLSCVVCVEGIVTK	1	0	Unmodified	2172.0629	0.062882892	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	11	0											1						24.257	24.257	2	0.0053037	22002	DP690-11	149.32	115.27			NaN	NaN	NaN	0	0	Median	0	0	0	14359	581	13409	28177	68186	68186		1	9606
TLTSIVHLER	0	1	Unmodified	1167.6612	0.66117189	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															14.935	14.935	3	0.038631	7652	DP690-2	70.412	32.695			NaN	NaN	NaN	0	0	Median	1027400	0	1027400	14360	1555	13410	28178	68187	68187		1	9606
TLTTMAPYLSTEDVPLAR	0	1	Oxidation (M)	1994.003	0.0030430525	1728	Q8TEX9	IPO4	Importin-4	yes	yes	0	1	0	3	0			2														18.743	18.743	2	0.00023968	13538	DP690-3	135.81	75.173			NaN	NaN	NaN	0	0	Median	10005000	5884300	4121000	14361	1728	13411	28179;28180	68188;68189;68190;68191	68188	2313	4	9606
TLVAHYPPVQVLFEK	1	0	Unmodified	1739.961	0.9610423	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	9.75	0.433									1	3							18.666	18.666	3	1.3934E-07	14794	DP690-10	140.27	109.3			0.70063	0.86597	NaN	1	0	Median	80321000	78583000	1737300	14362	858	13412	28181;28182;28183;28184	68192;68193;68194;68195;68196;68197	68193		6	9606
TLVDNAYSCDPR	0	1	Unmodified	1409.6245	0.62452839	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	11	0											1						14.121	14.121	2	0.00025271	8081	DP690-11	150.61	101.81			1.0367	1.253	NaN	1	0	Median	101250000	42169000	59083000	14363	1941	13413	28185	68198;68199;68200;68201	68199		4	9606
TLVEDLFADK	1	0	Unmodified	1149.5918	0.59175492	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							20.207	20.207	2	0.0089272	16991	DP690-10	119.75	68.411			NaN	NaN	NaN	0	0	Median	0	0	0	14364	269	13414	28186	68202	68202		1	9606
TLVLIGAQGVGR	0	1	Unmodified	1182.7085	0.70845643	2280;1256	Q9NZW5;Q14168	MPP6;MPP2	MAGUK p55 subfamily member 6;MAGUK p55 subfamily member 2	no	no	0	0	0	12	0												2					17.133	17.133	2	0.00036756	12009	DP690-12	116.3	82.118			0.48338	0.57227	NaN	1	0	Median	76898000	42441000	34457000	14365	2280;1256	13415	28187;28188	68203;68204;68205	68203		3	9606
TLVLLGAHGVGR	0	1	Unmodified	1191.7088	0.70879078	121	O14936	CASK	Peripheral plasma membrane protein CASK	yes	yes	0	0	0	11	0											1						15.122	15.122	3	0.057264	9675	DP690-11	45.915	18.051			5.4231	6.6795	NaN	1	0	Median	12513000	1816200	10696000	14366	121	13416	28189	68206;68207	68207		2	9606
TLVLLLGVDPSR	0	1	Unmodified	1281.7656	0.76563696	727	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	2	0		1															21.121	21.121	2	0.00044699	14723	DP690-2	113.69	73.838			0.91712	0.9385	NaN	1	0	Median	1615400	728600	886800	14367	727	13417	28190	68208;68209;68210;68211	68209		4	9606
TLVLSNLSYSATEETLQEVFEK	1	0	Unmodified	2500.2585	0.2584657	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11	0											1						24.045	24.045	2	2.3476E-54	21755	DP690-11	307.07	307.07			0.99282	1.2028	NaN	1	0	Median	42862000	22063000	20799000	14368	534	13418	28191	68212;68213;68214;68215;68216	68213		5	9606
TLVNKEEPPKELPAAEPVLSPLEGTK	3	0	Unmodified	2785.5113	0.51132634	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	2	13	0													1				16.458	16.458	4	0.011419	10891	DP690-13	55.662	48.631			0.4854	0.50846	NaN	1	0	Median	178190000	119680000	58510000	14369	2045	13419	28192	68217	68217		1	9606
TLVQILTEPR	0	1	Unmodified	1168.6816	0.68157298	287	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	12	0												1					18.648	18.648	2	0.00091921	14108	DP690-12	109.29	75.118			0.67335	0.8047	NaN	1	0	Median	29057000	11815000	17241000	14370	287	13420	28193	68218;68219	68219		2	9606
TLVTQNSGVEALIHAILR	0	1	Unmodified	1934.0949	0.094910023	496	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	1	0	1																23.15	23.15	3	0.0016357	14963	DP690-1	104.2	62.773			NaN	NaN	NaN	0	0	Median	765410	765410	0	14371	496	13421	28194	68220;68221	68221		2	9606
TLYDFPGNDAEDLPFK	1	0	Unmodified	1840.8519	0.85194536	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	6.5	0.5						1	1										20.615	20.615	2	4.2146E-07	14587	DP690-6	163.45	141.39			0.64304	0.70196	11.692	2	0	Median	83228000	47819000	35409000	14372	753	13422	28195;28196	68222;68223;68224;68225;68226;68227;68228;68229;68230;68231;68232;68233	68223		12	9606
TLYDFPGNDAEDLPFKK	2	0	Unmodified	1968.9469	0.94690838	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	1	6	0						1											18.326	18.326	3	6.59E-05	12112	DP690-6	113.69	113.69			0.69346	0.71688	NaN	1	0	Median	75168000	45323000	29845000	14373	753	13423	28197	68234;68235;68236;68237;68238	68236		5	9606
TLYISDSDKR	1	1	Unmodified	1196.6037	0.60371659	1125	Q06330	RBPJ	Recombining binding protein suppressor of hairless	yes	yes	0	0	1	12	0												1					11.374	11.374	3	0.0002047	3968	DP690-12	112.36	87.519			5.4782	6.7157	NaN	1	0	Median	56781000	8899300	47881000	14374	1125	13424	28198	68239;68240	68240		2	9606
TLYVEEVVPNVIEPSFGLGR	0	1	Unmodified	2217.1681	0.16813455	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3	0			1														22.78	22.78	2	2.9120000000000002E-30	18359	DP690-3	234.83	234.83			0.74167	0.84261	NaN	1	0	Median	11359000	6850000	4508900	14375	720	13425	28199	68241;68242;68243;68244;68245;68246;68247;68248	68243		8	9606
TMDAGCKPYMAPER	1	1	Oxidation (M)	1641.6949	0.69493291	755	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	1	1	6	0						1											10.783	10.783	3	0.015214	3251	DP690-6	59.225	48.74			0.80649	0.90384	NaN	1	0	Median	6149600	3434100	2715500	14376	755	13426	28200	68249;68250;68251	68251	1123	3	9606
TMDLPFLEASTLR	0	1	Oxidation (M)	1508.7545	0.75447993	533	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	1	0	3	0			1														20.041	20.041	2	0.017899	15174	DP690-3	96.015	62.054			NaN	NaN	NaN	0	0	Median	0	0	0	14377	533	13427	28201	68252	68252	685	1	9606
TMEIFQLLR	0	1	Oxidation (M)	1165.6165	0.61652988	1872	Q96HR3	MED30	Mediator of RNA polymerase II transcription subunit 30	yes	yes	0	1	0	15	0															1		19.709	19.709	2	0.020485	14895	DP690-15	87.181	35.988			0.76665	0.88551	NaN	1	0	Median	10778000	5958000	4819900	14378	1872	13428	28202	68253	68253	2429	1	9606
TMGVMFTPLTVK	1	0	Oxidation (M)	1339.688	0.68798027	80	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	1	0	13	0													1				18.236	18.236	2	0.073718	13165	DP690-13	62.166	40.48			0.88224	1.0269	NaN	1	0	Median	27146000	13275000	13871000	14379	80	13429	28203	68254	68254		1	9606
TMLEDLGMDDEGDDDPVPLPNVNAAILKK	2	0	2 Oxidation (M)	3156.4843	0.48426124	1019	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	2	1	16	0																1	19.644	19.644	3	1.7928E-06	14249	DP690-16	120.33	93.472			0.69831	0.79979	NaN	1	0	Median	12230000	7382800	4846700	14380	1019	13430	28204	68255;68256;68257;68258	68255	1543;1544	4	9606
TMLELINQLDGFDPR	0	1	Unmodified	1760.8767	0.87672033	676	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	5	0					1												23.848	23.848	2	0.021465	19100	DP690-5	66.326	35.178			0.99932	1.0369	NaN	1	0	Median	3789000	2429700	1359300	14381	676	13431	28205	68259	68259		1	9606
TMLELLNQLDGFDSR	0	1	Oxidation (M)	1766.8509	0.85089951	965	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	1	0	4	0				2													21.375	21.375	2	0.00069362	16227	DP690-4	138.42	99.463			NaN	NaN	NaN	0	0	Median	1403200	1403200	0	14382	965	13432	28206;28207	68260;68261;68262	68261	1484	3	9606
TMLELLNQLDGFEATK	1	0	Unmodified	1821.9183	0.91825079	966	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	5	0					1												23.822	23.822	2	0.011548	19062	DP690-5	101.72	41.879			NaN	NaN	NaN	0	0	Median	1882700	0	1882700	14383	966	13433	28208	68263	68263		1	9606
TMLELLNQLDGFQPNTQVK	1	0	Oxidation (M)	2204.1147	0.11471877	519	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	1	0	5	0					2												20.922	20.922	2	3.1963E-11	15522	DP690-5	170.79	136.27			0.77055	0.77184	NaN	1	0	Median	10930000	6254500	4675200	14384	519	13434	28209;28210	68264;68265;68266	68264	664	3	9606
TMLESAGGLIQTAR	0	1	Oxidation (M)	1462.745	0.74497787	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	1	0	2	0		1															15.768	15.768	2	0.0015264	8699	DP690-2	101.93	77.707			1.3494	1.4035	NaN	1	0	Median	4805800	2006400	2799400	14385	2482	13435	28211	68267;68268	68268	2922	2	9606
TMLITHMQDLQEVTQDLHYENFR	0	1	Oxidation (M)	2877.3426	0.34256323	1310	Q15019	SEPT2	Septin-2	yes	yes	0	1	0	14	0														1			18.499	18.499	4	0.00028337	13677	DP690-14	91.337	75.837			1.1867	1.4324	NaN	1	0	Median	61206000	38393000	22813000	14386	1310	13436	28212	68269	68269	2003	1	9606
TMLITHMQDLQEVTQDLHYENFR	0	1	Unmodified	2861.3476	0.3476486	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	14	0														1			20.096	20.096	4	0.00026206	15799	DP690-14	95.361	84.05			0.52432	0.63515	NaN	1	0	Median	40412000	22014000	18398000	14387	1310	13436	28213	68270;68271	68271		2	9606
TMLLLSR	0	1	Unmodified	832.48406	0.48405915	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						16.448	16.448	2	0.050217	11502	DP690-11	134.66	44.76			NaN	NaN	NaN	0	0	Median	0	0	0	14388	897	13437	28214	68272	68272		1	9606
TMLYTPQEMK	1	0	Oxidation (M)	1256.5781	0.57809546	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	1	0	13	0													1				14.195	14.195	2	0.06941	7660	DP690-13	66.962	34.15			1.044	1.2092	NaN	1	0	Median	17000000	6524400	10475000	14389	2431	13438	28215	68273	68273		1	9606
TMMACGGSIQTSVNALSADVLGR	0	1	2 Oxidation (M)	2370.0978	0.097764849	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	2	0	9.33	3.77				1								2					20.704	20.704	2	1.4962E-23	16771	DP690-12	200.77	178.83			0.6855	0.83852	NaN	1	0	Median	5915800	2875000	3040800	14390	1959	13439	28216;28217;28218	68274;68275;68276	68274	2504;2505	3	9606
TMNISPEQPQH	0	0	Oxidation (M)	1296.5768	0.57684991	2530	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	1	0	3	0			1														10.751	10.751	2	0.0051674	3130	DP690-3	112.71	84.939			NaN	NaN	NaN	0	0	Median	0	0	0	14391	2530	13440	28219	68277;68278;68279	68279	2963	3	9606
TMNLNPMILTNILSSPYFK	1	0	2 Oxidation (M)	2228.1221	0.12211233	1447	Q5VTL8	PRPF38B	Pre-mRNA-splicing factor 38B	yes	yes	0	2	0	11	1										1		1					23.55	23.55	2	8.9349E-05	20152	DP690-12	122.34	122.34			0.74211	0.90114	NaN	1	0	Median	11306000	9040500	2265900	14392	1447	13441	28220;28221	68280;68281;68282;68283;68284;68285;68286;68287;68288	68287	2152;2153	9	9606
TMPILSPGNTQTLTELELK	1	0	Oxidation (M)	2101.0977	0.097671719	2025	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	1	0	9.33	3.77				1								2					19.732	19.732	2	4.3678E-30	15496	DP690-12	244.71	183.68			0.6552	0.7875	NaN	1	0	Median	23260000	14636000	8623600	14393	2025	13442	28222;28223;28224	68289;68290;68291;68292;68293	68291	2562	5	9606
TMQGSEVVNVLK	1	0	Oxidation (M)	1319.6755	0.67550132	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	1	0	3	0			1														14.863	14.863	2	0.0091575	8426	DP690-3	84.31	60.933			0.94888	1.0018	NaN	1	0	Median	38611000	20616000	17995000	14394	1739	13443	28225	68294;68295	68295	2318	2	9606
TMQNTSDLDTAR	0	1	Oxidation (M)	1367.5987	0.59870757	496	P14923	JUP	Junction plakoglobin	yes	yes	0	1	0	1	0	1																10.671	10.671	2	0.021672	2631	DP690-1	93.258	50.922			NaN	NaN	NaN	0	0	Median	1948100	1948100	0	14395	496	13444	28226	68296	68296	633	1	9606
TMQTLLSLVR	0	1	Unmodified	1160.6587	0.65872905	356	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	7	0							1										20.396	20.396	2	0.00017411	15067	DP690-7	131.62	103.53			0.86497	1.0052	NaN	1	0	Median	12641000	7091300	5549600	14396	356	13445	28227	68297;68298;68299;68300	68299		4	9606
TMQTLLSLVR	0	1	Oxidation (M)	1176.6536	0.65364367	356	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	1	0	7	0							5										18.359	18.359	2	1.9564E-06	12621	DP690-7	167.12	130.36			NaN	NaN	NaN	0	0	Median	29866000	0	29866000	14397	356	13445	28228;28229;28230;28231;28232	68301;68302;68303;68304;68305;68306;68307	68302	367	7	9606
TMTLFSALR	0	1	Oxidation (M)	1054.5481	0.54811597	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	2	0		1															17.626	17.626	2	0.066675	10963	DP690-2	70.525	48.033			1.1992	1.2507	NaN	1	0	Median	5097100	2079000	3018100	14398	1264	13446	28233	68308	68308		1	9606
TNAENEFVTIK	1	0	Unmodified	1264.6299	0.62993134	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3.75	3.11	1	1	1						1								15.349	15.349	2	2.1265E-10	8087	DP690-2	176.48	111.33		+	NaN	NaN	NaN	0	0	Median	159830000	159830000	0	14399	369	13447	28234;28235;28236;28237	68309;68310;68311;68312;68313;68314;68315	68312		7	9606
TNAENEFVTIKK	2	0	Unmodified	1392.7249	0.72489436	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	7.9	4.9	2	2		2	3			2	2	1		2		1	1	2	13.043	13.043	2;3	6.9535E-34	5919	DP690-9	238.86	165.02		+	NaN	NaN	NaN	0	0	Median	1086300000	1086300000	0	14400	369	13448	28238;28239;28240;28241;28242;28243;28244;28245;28246;28247;28248;28249;28250;28251;28252;28253;28254;28255;28256;28257	68316;68317;68318;68319;68320;68321;68322;68323;68324;68325;68326;68327;68328;68329;68330;68331;68332;68333;68334;68335;68336;68337;68338;68339;68340;68341;68342;68343;68344;68345;68346;68347;68348;68349;68350;68351;68352;68353;68354	68354		39	9606
TNATSPGVNSSTSPQSTDK	1	0	Unmodified	1877.8603	0.86027822	234	O75044	SRGAP2	SLIT-ROBO Rho GTPase-activating protein 2	yes	yes	0	0	0	11	0											2						10.525	10.525	2	3.7659E-10	2834	DP690-11	158.93	137.53			0.53051	0.64268	NaN	1	0	Median	42946000	24429000	18517000	14401	234	13449	28258;28259	68355;68356;68357	68355		3	9606
TNCNVAVINVGAPAAGMNAAVR	0	1	Oxidation (M)	2185.0732	0.073205078	1089	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	1	0	3	0			2														15.924	15.924	2	1.7949E-10	9938	DP690-3	160.65	140.91			1.427	1.6079	NaN	1	0	Median	8838100	3420500	5417600	14402	1089	13450	28260;28261	68358;68359;68360;68361	68359	1710	4	9606
TNDQMVVVYLASLIR	0	1	Oxidation (M)	1736.9131	0.91310583	839	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	1	0	6	0						1											23.755	23.755	2	0.074716	18170	DP690-6	76.073	35.358			NaN	NaN	NaN	0	0	Median	642660	0	642660	14403	839	13451	28262	68362	68362		1	9606
TNEKVELQELNDR	1	1	Unmodified	1586.79	0.79001381	424	P08670;P17661	VIM;DES	Vimentin;Desmin	yes	no	0	0	1	12.4	2.72				1								4	2	4	1		13.436	13.436	2;3	5.7896E-17	6695	DP690-13	304.89	251.77			0.82239	0.85224	19.155	7	0	Median	4565400000	2285900000	2279600000	14404	424	13452	28263;28264;28265;28266;28267;28268;28269;28270;28271;28272;28273;28274	68363;68364;68365;68366;68367;68368;68369;68370;68371;68372;68373;68374;68375;68376;68377;68378;68379;68380;68381;68382;68383;68384;68385;68386;68387;68388;68389;68390;68391;68392	68374		30	9606
TNELINISSSK	1	0	Unmodified	1204.6299	0.62993134	1211	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	2	0		1															14.998	14.998	2	0.0024249	7709	DP690-2	94.363	52.172			0.97193	0.96395	NaN	1	0	Median	3162900	1428400	1734400	14405	1211	13453	28275	68393;68394;68395	68393		3	9606
TNETGYQEAIVKEPEINTTLQMR	1	1	Oxidation (M)	2680.3014	0.30140992	1629	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	yes	yes	0	1	1	14	0														1			16.461	16.461	3	0.00025396	10880	DP690-14	102.9	90.586			0.64393	0.80294	NaN	1	0	Median	43790000	26611000	17180000	14406	1629	13454	28276	68396;68397	68397	2269	2	9606
TNETGYQEAIVKEPEINTTLQMR	1	1	Unmodified	2664.3065	0.3064953	1629	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	yes	yes	0	0	1	14	0														1			17.496	17.496	3	7.9349E-09	12280	DP690-14	149.93	101.73			NaN	NaN	NaN	0	0	Median	23297000	23297000	0	14407	1629	13454	28277	68398;68399;68400;68401	68399		4	9606
TNFFIQLVRPGVAQPEDTVQFR	0	2	Unmodified	2561.3391	0.33905647	1358	Q16540	MRPL23	39S ribosomal protein L23, mitochondrial	yes	yes	0	0	1	16	0																1	20.529	20.529	3	0.00010588	15274	DP690-16	112.53	96.438			0.62405	0.65933	NaN	1	0	Median	6481300	3607200	2874100	14408	1358	13455	28278	68402;68403;68404;68405	68403		4	9606
TNFISSHTEKPVR	1	1	Unmodified	1514.7841	0.78414057	1649	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	1	9	0									1								10.659	10.659	3	0.0072062	3036	DP690-9	71.558	50.824			0.64178	0.74435	NaN	1	0	Median	5378200	2682200	2695900	14409	1649	13456	28279	68406	68406		1	9606
TNGKEPELLEPIPYEFMA	1	0	Oxidation (M)	2093.0027	0.0027087015	758	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	1	1	15	0															1		20.951	20.951	2	0.0068814	16224	DP690-15	88.092	67.711			0.81529	0.92851	NaN	1	0	Median	2136200	1199300	936890	14410	758	13457	28280	68407;68408;68409;68410;68411	68407	1131	5	9606
TNHIGHTGYLNTVTVSPDGSLCASGGK	1	0	Unmodified	2742.3031	0.30314125	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	14	0														2			14.816	14.816	3;4	4.6814E-39	8645	DP690-14	217.21	217.21			0.75726	0.88132	2.4931	2	0	Median	505030000	283250000	221790000	14411	1022	13458	28281;28282	68412;68413;68414;68415;68416;68417;68418;68419;68420;68421;68422;68423	68422		12	9606
TNHIYVSSDDIK	1	0	Unmodified	1390.6729	0.67285879	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	9.5	0.5									1	1							12.551	12.551	2	0.0039311	5958	DP690-10	117.95	51.381			NaN	NaN	NaN	0	0	Median	2214100	2214100	0	14412	1492	13459	28283;28284	68424;68425	68424		2	9606
TNIFQIQR	0	1	Unmodified	1018.556	0.55597854	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		3															16.256	16.256	2	0.030277	9228	DP690-2	124.34	67.622			NaN	NaN	NaN	0	0	Median	4738100	0	4738100	14413	1555	13460	28285;28286;28287	68426;68427;68428	68428		3	9606
TNIIPVLEDAR	0	1	Unmodified	1239.6823	0.68230126	12	A6NHQ2	FBLL1	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	yes	yes	0	0	0	14	0														1			17.936	17.936	2	0.00036497	12865	DP690-14	120.27	0			0.81875	0.97296	NaN	1	0	Median	116370000	70551000	45817000	14414	12	13461	28288	68429;68430	68430		2	9606
TNILNSEQVIVEVLPNQPVK	1	0	Unmodified	2233.2318	0.23179744	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	10	0										1							20.907	20.907	2	2.1414E-17	18003	DP690-10	199.33	199.33			0.74585	0.90839	NaN	1	0	Median	20849000	12942000	7906400	14415	13	13462	28289	68431;68432;68433	68431		3	9606
TNLDESDVQPVK	1	0	Unmodified	1343.6569	0.65687437	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	12	0												1					13.337	13.337	2	0.07741	6683	DP690-12	81.771	31.298			NaN	NaN	NaN	0	0	Median	20435000	20435000	0	14416	2475	13463	28290	68434	68434		1	9606
TNLLDELPQSVLK	1	0	Unmodified	1468.8137	0.81370936	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	12.5	0.5												1	1				20.953	20.953	2	9.9555E-06	16747	DP690-13	188.27	141.86			0.73147	0.85714	1.6565	2	0	Median	146700000	82598000	64097000	14417	1589	13464	28291;28292	68435;68436;68437;68438;68439;68440	68439		6	9606
TNLLLQAHLSR	0	1	Unmodified	1264.7252	0.72516913	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							15.117	15.117	3	0.00075359	9773	DP690-10	96.229	61.537			0.86562	1.0396	NaN	1	0	Median	198670000	96296000	102370000	14418	269	13465	28293	68441;68442;68443;68444	68444		4	9606
TNMLVQFLMEMYKMKK	3	0	3 Oxidation (M)	2082.0022	0.0021968909	158	O15480	MAGEB3	Melanoma-associated antigen B3	yes	yes	0	3	2	5	1				1		1											19.693	19.693	2	0.019344	14317	DP690-4	87.667	25.329			NaN	NaN	NaN	0	0	Median	81803000	81803000	0	14419	158	13466	28294;28295	68445;68446	68445	176;177;178	2	9606
TNNVSEHEDTDKYR	1	1	Unmodified	1706.7496	0.74960556	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	11	0											2						10.298	10.298	3;4	3.8923E-05	2563	DP690-11	155.66	127.23			0.85283	0.94275	NaN	1	0	Median	294490000	184310000	110180000	14420	877	13467	28296;28297	68447;68448	68448		2	9606
TNPFPLLEDEDDLFTDQK	1	0	Unmodified	2135.9899	0.98989541	1454	Q9Y4E1;Q641Q2	FAM21C;FAM21A	WASH complex subunit FAM21C;WASH complex subunit FAM21A	yes	no	0	0	0	10	0										1							22.837	22.837	2	0.0014814	20508	DP690-10	87.148	68.418			1.0286	1.2468	NaN	1	0	Median	8943600	4691500	4252100	14421	1454	13468	28298	68449;68450	68450		2	9606
TNPSPTNPFSSDLQK	1	0	Unmodified	1631.7791	0.77911477	804	P49757	NUMB	Protein numb homolog	yes	yes	0	0	0	12	0												1					15.966	15.966	2	2.3503E-14	10393	DP690-12	216.84	185.77			0.59153	0.70449	NaN	1	0	Median	40720000	22074000	18646000	14422	804	13469	28299	68451;68452;68453;68454	68451		4	9606
TNQELQEINR	0	1	Unmodified	1243.6157	0.61567826	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	12.1	3.63			1	1	1	1	1	1	1			1	1	17	2	1	20.398	20.398	2	6.4067E-15	5559	DP690-15	232.72	137.37			0.8042	0.84935	22.955	12	0	Median	39098000000	20787000000	18311000000	14423	404	13470	28300;28301;28302;28303;28304;28305;28306;28307;28308;28309;28310;28311;28312;28313;28314;28315;28316;28317;28318;28319;28320;28321;28322;28323;28324;28325;28326;28327;28328	68455;68456;68457;68458;68459;68460;68461;68462;68463;68464;68465;68466;68467;68468;68469;68470;68471;68472;68473;68474;68475;68476;68477;68478;68479;68480;68481;68482;68483;68484;68485;68486;68487;68488;68489;68490;68491;68492;68493;68494;68495;68496;68497;68498;68499;68500;68501;68502;68503;68504;68505;68506;68507;68508;68509;68510;68511	68485		57	9606
TNRPPLSLSR	0	2	Unmodified	1139.6411	0.64110515	1129	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	15	0															1		11.704	11.704	3	0.00020694	4271	DP690-15	118.23	94.001			0.83193	0.90247	NaN	1	0	Median	15403000	8110900	7291900	14424	1129	13471	28329	68512;68513;68514;68515	68514		4	9606
TNSSSNDLEVEDR	0	1	Unmodified	1464.6328	0.63284447	1612	Q8IX90	SKA3	Spindle and kinetochore-associated protein 3	yes	yes	0	0	0	13	0													1				12.06	12.06	2	3.6503E-06	4724	DP690-13	193.3	163.53			0.88235	1.0865	NaN	1	0	Median	23086000	12480000	10606000	14425	1612	13472	28330	68516;68517;68518;68519	68517		4	9606
TNSTFNQVVLK	1	0	Unmodified	1249.6667	0.6666512	1129	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	8	7	1														1		15.09	15.09	2	0.00011476	8810	DP690-15	146.79	108.51			1.0418	1.101	0.088895	2	0	Median	112940000	57692000	55247000	14426	1129	13473	28331;28332	68520;68521;68522;68523	68523		4	9606
TNSTFNQVVLKR	1	1	Unmodified	1405.7678	0.76776222	1129	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	15	0															1		13.392	13.392	3	0.00011723	6574	DP690-15	98.353	56.874			0.81765	0.91457	NaN	1	0	Median	77935000	44611000	33325000	14427	1129	13474	28333	68524;68525;68526;68527	68525		4	9606
TNVLGHLQQGGAPTPFDR	0	1	Unmodified	1906.965	0.96495848	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	3	0			1														16.208	16.208	3	1.9361E-11	10274	DP690-3	158.45	123.58			0.79507	0.85726	NaN	1	0	Median	72633000	36996000	35636000	14428	518	13475	28334	68528;68529;68530;68531	68531		4	9606
TNYNDRYDEIR	0	2	Unmodified	1457.6535	0.65352033	984	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	7	0							1										12.306	12.306	3	0.050863	5005	DP690-7	51.252	29.621			0.89267	0.91585	NaN	1	0	Median	15717000	8480100	7236500	14429	984	13476	28335	68532	68532		1	9606
TPADCPVIAIDSFR	0	1	Unmodified	1560.7606	0.76062794	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	8	3.56					1	1							1				19.026	19.026	2	5.8615E-14	12899	DP690-6	220.5	195.03			0.7053	0.7198	10.377	3	0	Median	708690000	424570000	284120000	14430	1989	13477	28336;28337;28338	68533;68534;68535;68536;68537;68538;68539;68540;68541;68542;68543;68544	68543		12	9606
TPAFAESVTEGDVR	0	1	Unmodified	1477.7049	0.7048872	685	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	13	0													2				15.749	15.749	2	2.5673E-09	9779	DP690-13	205.56	157.72			0.77939	0.9514	NaN	1	0	Median	39035000	19223000	19812000	14431	685	13478	28339;28340	68545;68546;68547;68548	68546		4	9606
TPAILEASAGAIQNLCAGR	0	1	Unmodified	1911.9836	0.98364501	216	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	11	0											1						20.564	20.564	2	7.1544E-05	17368	DP690-11	159.66	121.47			0.75446	0.90009	NaN	1	0	Median	37040000	17933000	19107000	14432	216	13479	28341	68549;68550;68551	68549		3	9606
TPAIPTAVNLADSR	0	1	Unmodified	1424.7623	0.7623425	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	9	0									1								16.886	16.886	2	0.00010139	10983	DP690-9	122.69	70.928			0.66872	0.83421	NaN	1	0	Median	17502000	9920600	7580900	14433	2422	13480	28342	68552;68553;68554	68552		3	9606
TPALVFEHVNNTDFK	1	0	Unmodified	1730.8628	0.86278482	1035	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	14	0														1			16.448	16.448	3	0.00059516	10927	DP690-14	90.853	64.363			0.89098	1.0631	NaN	1	0	Median	128910000	62723000	66183000	14434	1035	13481	28343	68555;68556;68557	68556		3	9606
TPALVFEYINNTDFK	1	0	Unmodified	1770.8829	0.88285156	539	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	14	0														2			21.555	21.555	2	6.7999E-07	17491	DP690-14	191.79	191.79			0.94029	1.1346	NaN	1	0	Median	33326000	19809000	13517000	14435	539	13482	28344;28345	68558;68559;68560	68558		3	9606
TPALVNAAVTYSKPR	1	1	Unmodified	1586.878	0.87804096	284	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	1	16	0																1	15.267	15.267	3	6.1826E-06	8874	DP690-16	133.23	114.82			0.6565	0.72173	NaN	1	0	Median	35255000	21146000	14110000	14436	284	13483	28346	68561;68562	68562		2	9606
TPAQFDADELR	0	1	Unmodified	1261.5939	0.59388018	365	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	6	0						2											15.326	15.326	2	9.7616E-05	8455	DP690-6	175.93	115.91			0.93665	1.0148	NaN	1	0	Median	69739000	28333000	41406000	14437	365	13484	28347;28348	68563;68564;68565	68563		3	9606
TPAQYDASELK	1	0	Unmodified	1221.5877	0.58773217	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	9	4.7	1	1	1	1	1	2	1	1	1	1	2		1	1	3	1	13.199	13.199	2	3.9538E-13	6260	DP690-15	217.02	169.15			0.80795	0.81157	19.516	11	0	Median	31397000000	17428000000	13968000000	14438	404	13485	28349;28350;28351;28352;28353;28354;28355;28356;28357;28358;28359;28360;28361;28362;28363;28364;28365;28366;28367	68566;68567;68568;68569;68570;68571;68572;68573;68574;68575;68576;68577;68578;68579;68580;68581;68582;68583;68584;68585;68586;68587;68588;68589;68590;68591;68592;68593;68594;68595;68596;68597;68598;68599;68600;68601;68602;68603;68604;68605;68606;68607;68608;68609;68610;68611;68612;68613	68586		48	9606
TPAQYDASELKASMK	2	0	Oxidation (M)	1654.7872	0.78723662	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	1	1	11.3	3.77						1								2			12.061	12.061	2;3	7.7283E-05	4821	DP690-14	142.1	120.03			0.88953	0.99221	15.023	3	0	Median	251870000	126980000	124890000	14439	404	13486	28368;28369;28370	68614;68615;68616;68617;68618;68619;68620;68621;68622	68616	439	9	9606
TPAQYDASELKASMK	2	0	Unmodified	1638.7923	0.792322	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	14	0														2			13.951	13.951	2;3	9.3309E-05	7445	DP690-14	161.25	142.01			0.55479	0.62224	NaN	1	0	Median	163350000	157120000	6228500	14440	404	13486	28371;28372	68623;68624;68625	68624		3	9606
TPASGLQTPTSTPAPGSATR	0	1	Unmodified	1896.9541	0.95411902	1838	Q96DF8	DGCR14	Protein DGCR14	yes	yes	0	0	0	12	0												1					13.371	13.371	2	1.5279E-11	6695	DP690-12	192.39	136.42			NaN	NaN	NaN	0	0	Median	0	0	0	14441	1838	13487	28373	68626	68626		1	9606
TPASPVVHIR	0	1	Unmodified	1075.6138	0.61382777	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	12	0												3					11.601	11.601	3	0.0013512	4318	DP690-12	120.31	82.494			NaN	NaN	NaN	0	0	Median	6576900	6576900	0	14442	494	13488	28374;28375;28376	68627;68628;68629;68630	68627		4	9606
TPCEEILVK	1	0	Unmodified	1087.5583	0.5583463	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	11.4	2.06									1	1	1	1			1		14.35	14.35	2	0.00069477	8494	DP690-10	140.35	77.889			0.75022	0.74124	7.2705	4	0	Linear	3114699999.9999995	1750499999.9999998	1364200000	14443	549	13489	28377;28378;28379;28380;28381	68631;68632;68633;68634;68635;68636;68637;68638;68639;68640;68641;68642;68643;68644;68645;68646;68647;68648;68649	68633		19	9606
TPCEEVYVK	1	0	Unmodified	1123.522	0.52196079	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7.33	3.45		1	1						1	3							12.741	12.741	2	0.0051631	5007	DP690-2	99.136	68.969			1.071	1.0833	25.7	3	0	Median	242250000	23655000	218590000	14444	1270	13490	28382;28383;28384;28385;28386;28387	68650;68651;68652;68653;68654;68655;68656;68657	68655		8	9606
TPCNAGTFSQPEK	1	0	Unmodified	1435.6402	0.64017845	185	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	9.67	3.3						1			1					1			11.671	11.671	2	3.0515E-13	4105	DP690-14	290.28	249.2			0.7322	0.79709	6.0629	3	0	Plateau	780330000	451720000	328610000	14445	185	13491	28388;28389;28390	68658;68659;68660;68661;68662;68663;68664;68665;68666;68667;68668;68669;68670	68659		13	9606
TPDTSTYCYETAEK	1	0	Unmodified	1664.6876	0.68758215	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	7	3.56		1							1	1							13.395	13.395	2	1.5003E-15	7135	DP690-10	271.21	254.83			0.82891	1.0399	13.464	2	0	Median	87668000	47926000	39742000	14446	763	13492	28391;28392;28393	68671;68672;68673;68674;68675;68676;68677;68678;68679	68672		9	9606
TPEDGDYSYEIIEK	1	0	Unmodified	1657.7359	0.73591255	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	9.5	0.5									1	1							16.843	16.843	2	0.00020945	10962	DP690-9	116.84	87.303			0.91552	1.1486	28.584	2	0	Median	109190000	44766000	64420000	14447	763	13493	28394;28395	68680;68681;68682;68683;68684	68683		4	9606
TPEEGGYSYDISEK	1	0	Unmodified	1573.6784	0.67839767	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	9.5	0.5									1	1							14.547	14.547	2	3.2403E-05	8894	DP690-10	173.04	128.06			0.67343	0.84493	8.7868	2	0	Median	132440000	72032000	60405000	14448	763	13494	28396;28397	68685;68686;68687;68688	68686		4	9606
TPEILTVNSIGQLK	1	0	Unmodified	1511.8559	0.85590853	1698	Q8NFH3	NUP43	Nucleoporin Nup43	yes	yes	0	0	0	14	0														1			18.843	18.843	2	6.6532E-15	14073	DP690-14	249.83	189.67			0.7191	0.86622	NaN	1	0	Median	102520000	58072000	44445000	14449	1698	13495	28398	68689;68690	68690		2	9606
TPEMIIQKPK	2	0	Oxidation (M)	1199.6584	0.6583947	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	1	9	0									1								10.612	10.612	3	0.076854	3020	DP690-9	43.77	15.538			3.8089	4.6437	NaN	1	0	Median	6127000	1852400	4274600	14450	1145	13496	28399	68691	68691		1	9606
TPENYPNAGLTMNYCR	0	1	Unmodified	1899.8244	0.82436718	39	CON__P06868;P00747	PLG	Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B	yes	no	0	0	0	12	0												1					16.246	16.246	2	0.0044708	10774	DP690-12	122.46	93.156		+	NaN	NaN	NaN	0	0	Median	10577000	10577000	0	14451	39	13497	28400	68692;68693;68694	68692		3	9606
TPENYPNAGLTMNYCR	0	1	Oxidation (M)	1915.8193	0.8192818	39	CON__P06868;P00747	PLG	Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B	yes	no	0	1	0	12	0												2					14.791	14.791	2	0.0030309	8675	DP690-12	138.24	97.183		+	NaN	NaN	NaN	0	0	Median	0	0	0	14452	39	13497	28401;28402	68695;68696	68695	43	2	9606
TPEQVAEEEYLLQELR	0	1	Unmodified	1945.9633	0.96328673	2182	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	12	0												2					21.032	21.032	2	0.01369	17185	DP690-12	113.25	76.807			NaN	NaN	NaN	0	0	Median	2374800	2374800	0	14453	2182	13498	28403;28404	68697;68698	68698		2	9606
TPEVDDEALEK	1	0	Unmodified	1244.5772	0.57722707	36	CON__P02754			yes	yes	0	0	0	6.22	4.1	1	1		1	1	1	2	1								1	13.518	13.518	2	6.937E-24	5367	DP690-1	218.6	165.67		+	NaN	NaN	NaN	0	0	Median	161530000	161530000	0	14454	36	13499	28405;28406;28407;28408;28409;28410;28411;28412;28413	68699;68700;68701;68702;68703;68704;68705;68706;68707;68708;68709;68710;68711;68712;68713;68714;68715;68716	68701		18	
TPEVDDEALEKFDK	2	0	Unmodified	1634.7675	0.76754703	36	CON__P02754			yes	yes	0	0	1	6.07	4.67	2	2	1	1	1	2	1	2								2	15.747	15.747	2;3	2.8401000000000004E-45	8584	DP690-2	255.41	189.14		+	NaN	NaN	NaN	0	0	Median	421310000	421310000	0	14455	36	13500	28414;28415;28416;28417;28418;28419;28420;28421;28422;28423;28424;28425;28426;28427	68717;68718;68719;68720;68721;68722;68723;68724;68725;68726;68727;68728;68729;68730;68731;68732;68733;68734;68735;68736;68737;68738;68739;68740;68741;68742	68727		26	
TPFLLSGTSYK	1	0	Unmodified	1212.639	0.63903946	894	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	9	4					1								1				17.452	17.452	2	0.00016673	12086	DP690-13	166.19	134.32			0.85542	0.89652	10.455	2	0	Median	317550000	177440000	140110000	14456	894	13501	28428;28429	68743;68744;68745;68746;68747;68748;68749;68750	68746		8	9606
TPGAATASASGAAEDGACGCLPNPGTFEECHR	0	1	Unmodified	3218.3452	0.34515878	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	14	0														1			16.156	16.156	3	1.4279000000000001E-63	10350	DP690-14	237.67	233.18			0.54694	0.65682	NaN	1	0	Median	83831000	51777000	32054000	14457	348	13502	28430	68751;68752;68753;68754	68751		4	9606
TPGAATASASGAAEDGACGCLPNPGTFEECHRK	1	1	Unmodified	3346.4401	0.44012179	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	1	14	0														1			14.877	14.877	4	7.916700000000001E-30	8722	DP690-14	187.71	173.47			0.78638	0.94029	NaN	1	0	Median	80540000	45357000	35182000	14458	348	13503	28431	68755;68756;68757;68758;68759;68760	68757		6	9606
TPGCSDLGPLIPQFLR	0	1	Unmodified	1769.9134	0.91344018	1500	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	0	0	3	0			1														22.282	22.282	2	0.00084814	17761	DP690-3	97.779	67.972			0.80866	0.89494	NaN	1	0	Median	5055000	2988000	2067000	14459	1500	13504	28432	68761;68762	68762		2	9606
TPGDFSYAYQKPEETTR	1	1	Unmodified	1988.9116	0.91158551	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	1	10	0										1							14.204	14.204	3	0.00020139	8392	DP690-10	104.16	104.16			0.78505	0.9418	NaN	1	0	Median	156950000	87216000	69735000	14460	763	13505	28433	68763;68764	68763		2	9606
TPGNGDGGSTSETPQPPR	0	1	Unmodified	1753.7867	0.78671935	2323	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	yes	yes	0	0	0	14	0														2			11.096	11.096	2	4.2695E-31	3550	DP690-14	255.85	234.82			0.524	0.65565	NaN	1	0	Median	7952000	4423600	3528500	14461	2323	13506	28434;28435	68765;68766;68767;68768	68766		4	9606
TPGNNLHEVETAQGQR	0	1	Unmodified	1749.8394	0.83942362	1668	Q8N9N8	EIF1AD	Probable RNA-binding protein EIF1AD	yes	yes	0	0	0	8	0								1									11.166	11.166	3	0.0001204	3825	DP690-8	115.04	91.639			0.84195	0.99894	NaN	1	0	Median	4812200	2429400	2382700	14462	1668	13507	28436	68769;68770;68771;68772	68769		4	9606
TPGPGAQSALR	0	1	Unmodified	1053.5567	0.55670682	971	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	10.7	3.77								2								1	10.998	10.998	2	2.5908E-06	3419	DP690-16	209.21	188.26			0.75361	0.75981	15.268	3	0	Plateau	1169600000	647270000	522380000	14463	971	13508	28437;28438;28439	68773;68774;68775;68776;68777;68778;68779;68780;68781	68773		9	9606
TPGRPTSSQSYEQNIK	1	1	Unmodified	1791.8751	0.87514042	212	O60573	EIF4E2	Eukaryotic translation initiation factor 4E type 2	yes	yes	0	0	1	15	0															1		10.771	10.771	3	2.1832E-07	3263	DP690-15	162.7	151.02			0.73705	0.82893	NaN	1	0	Median	65590000	38626000	26965000	14464	212	13509	28440	68782;68783;68784	68783		3	9606
TPHLLLMLLPSYR	0	1	Oxidation (M)	1568.8749	0.87486983	953	P61812	TGFB2	Transforming growth factor beta-2;Latency-associated peptide	yes	yes	0	1	0	13	0													1				19.838	19.838	3	0.0025017	15151	DP690-13	81.565	64.679			0.57415	0.70624	NaN	1	0	Median	24983000	14833000	10150000	14465	953	13510	28441	68785;68786;68787;68788	68786	1471	4	9606
TPHVLVLGSGVYR	0	1	Unmodified	1396.7827	0.78268401	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															15.424	15.424	3	1.7738E-05	8186	DP690-2	133.15	133.15			1.2522	1.303	NaN	1	0	Median	43347000	19619000	23728000	14466	602	13511	28442	68789;68790;68791;68792	68790		4	9606
TPIGSFLGSLSLLPATK	1	0	Unmodified	1700.9713	0.97127264	578	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	14	0														1			23.818	23.818	2	1.6171E-22	20266	DP690-14	240.37	198.89			0.67745	0.80174	NaN	1	0	Median	11249000	6594000	4655500	14467	578	13512	28443	68793;68794;68795;68796	68795		4	9606
TPIVGQPSIPGGPVR	0	1	Unmodified	1473.8304	0.83036248	41	CON__P12763			yes	yes	0	0	0	6	2				1				1									15.971	15.971	2	2.7157E-11	9826	DP690-4	178.95	110.3		+	NaN	NaN	NaN	0	0	Median	13233000	13233000	0	14468	41	13513	28444;28445	68797;68798;68799;68800;68801	68797		5	
TPKGPSSVEDIKAK	3	0	Unmodified	1455.7933	0.79330827	397	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	14	0														1			10.409	10.409	3	0.0018616	2702	DP690-14	86.214	47.977			0.61745	0.63329	NaN	1	0	Median	21823000	13310000	8513000	14469	397	13514	28446	68802	68802		1	9606
TPLEQEIFNLLHK	1	0	Unmodified	1580.8562	0.85624288	2020	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	0	11	0											1						21.92	21.92	3	1.0554E-08	19193	DP690-11	202.61	202.61			0.82286	0.9964	NaN	1	0	Median	43618000	23263000	20356000	14470	2020	13515	28447	68803;68804	68803		2	9606
TPLFDQIIDMLR	0	1	Oxidation (M)	1476.7647	0.76465068	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	1	0	10.8	0.98									1		3	1					24.567	24.567	2	8.2083E-05	21475	DP690-11	128.51	109.41			0.86684	1.0435	5.7119	3	0	Plateau	86563000	46105000	40458000	14471	891	13516	28448;28449;28450;28451;28452	68805;68806;68807;68808;68809;68810;68811;68812;68813;68814;68815;68816;68817;68818	68809	1357	14	9606
TPLFDQIIDMLR	0	1	Unmodified	1460.7697	0.76973606	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											2						25.928	25.928	2	0.00040869	23720	DP690-11	159.83	121.07			0.83296	1.0161	NaN	1	0	Median	17852000	9969500	7882100	14472	891	13516	28453;28454	68819;68820;68821;68822;68823	68822		5	9606
TPLHEIALSIK	1	0	Unmodified	1220.7129	0.71287311	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	10.7	0.471										1	2						15.759	15.759	3	0.00019188	10592	DP690-10	111.52	78.485			0.7966	0.97354	NaN	1	0	Median	211860000	89101000	122760000	14473	1137	13517	28455;28456;28457	68824;68825;68826;68827;68828;68829;68830	68825		7	9606
TPLPLAGPPR	0	1	Unmodified	1017.5971	0.59711507	1204	Q13410	BTN1A1	Butyrophilin subfamily 1 member A1	yes	yes	0	0	0	1.5	0.5	1	1															14.889	14.889	2	0.00076097	6448	DP690-1	143.12	84.953			NaN	NaN	NaN	0	0	Median	24632000	24632000	0	14474	1204	13518	28458;28459	68831;68832;68833;68834	68832		4	9606
TPLSEAEFEEIMNR	0	1	Oxidation (M)	1680.7665	0.76650118	1363	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	1	0	12	0												1					17.685	17.685	2	4.2778E-09	12772	DP690-12	205.52	180.4			0.64291	0.77174	NaN	1	0	Median	20102000	12670000	7431100	14475	1363	13519	28460	68835;68836	68836	2108	2	9606
TPLSEAEFEEIMNR	0	1	Unmodified	1664.7716	0.77158655	1363	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	12	0												1					19.997	19.997	2	4.9314E-07	15861	DP690-12	166.29	110.48			NaN	NaN	NaN	0	0	Median	4733700	4733700	0	14476	1363	13519	28461	68837	68837		1	9606
TPMENIGLQDSLLSR	0	1	Unmodified	1672.8454	0.8454202	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	8.67	4.03			1								1	1					19.199	19.199	2	6.0372999999999995E-40	15436	DP690-11	345.57	304.46			0.75548	0.83818	6.5998	3	0	Median	347600000	193950000	153650000	14477	581	13520	28462;28463;28464	68838;68839;68840;68841;68842;68843;68844;68845;68846;68847;68848;68849;68850	68842		13	9606
TPMENIGLQDSLLSR	0	1	Oxidation (M)	1688.8403	0.84033482	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	1	0	8.17	3.39			1	1					1		3						17.799	17.799	2	8.3121E-07	12291	DP690-3	190.35	161.29			0.61882	0.69575	13.555	2	0	Median	78861000	41412000	37449000	14478	581	13520	28465;28466;28467;28468;28469;28470	68851;68852;68853;68854;68855;68856;68857;68858;68859;68860;68861;68862	68855	769	12	9606
TPMSVLQQAGGSMMDGPGPR	0	1	3 Oxidation (M)	2063.9074	0.90744488	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	3	0	9	0									1								14.146	14.146	2	0.010573	7368	DP690-9	80.905	59.604			NaN	NaN	NaN	0	0	Median	0	0	0	14479	2422	13521	28471	68863	68863	2854;2855;2856	1	9606
TPMYGSQTPLQDGSR	0	1	Oxidation (M)	1652.7464	0.74643444	77	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	1	0	3	0			1														13.381	13.381	2	0.02285	6484	DP690-3	99.539	61.518			NaN	NaN	NaN	0	0	Median	0	0	0	14480	77	13522	28472	68864	68864	82	1	9606
TPNGCELVVGGEPQCWAEGR	0	1	Unmodified	2214.9786	0.97863599	1473	Q6ICH7	ASPHD2	Aspartate beta-hydroxylase domain-containing protein 2	yes	yes	0	0	0	14	0														1			17.882	17.882	2	1.1256E-15	12823	DP690-14	242.93	175.54			NaN	NaN	NaN	0	0	Median	0	0	0	14481	1473	13523	28473	68865	68865		1	9606
TPNTEQQTPLFQVISPQR	0	1	Unmodified	2083.0698	0.069817485	1632	Q8IZD4	DCP1B	mRNA-decapping enzyme 1B	yes	yes	0	0	0	12	0												2					19.055	19.055	2	9.9542E-05	14541	DP690-12	160.79	122.85			NaN	NaN	NaN	0	0	Median	0	0	0	14482	1632	13524	28474;28475	68866;68867	68866		2	9606
TPPAPSPFDLPELK	1	0	Unmodified	1507.7922	0.79224564	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										1							19.87	19.87	2	0.0012632	16578	DP690-10	97.163	69.391			0.66307	0.81854	NaN	1	0	Median	84000000	50342000	33658000	14483	311	13525	28476	68868	68868		1	9606
TPPASLYHGYLPENGVLRPEPTK	1	1	Unmodified	2535.3122	0.31217302	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	1	11	0											1						16.138	16.138	4	0.00038442	11142	DP690-11	82.406	68.676			0.52793	0.60517	NaN	1	0	Median	132600000	81020000	51579000	14484	1653	13526	28477	68869	68869		1	9606
TPPEAIALCSR	0	1	Unmodified	1213.6125	0.61250714	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	13	0													1				14.565	14.565	2	0.0032306	8179	DP690-13	91.636	62.719			0.77148	0.93167	NaN	1	0	Median	72397000	43426000	28972000	14485	811	13527	28478	68870;68871	68871		2	9606
TPPGLQHEYAAPADYFR	0	1	Unmodified	1931.9166	0.91661131	2021	Q9BVL2	NUPL1	Nucleoporin p58/p45	yes	yes	0	0	0	12	0												1					16.528	16.528	3	0.011624	11156	DP690-12	94.569	59.718			NaN	NaN	NaN	0	0	Median	45009000	45009000	0	14486	2021	13528	28479	68872;68873	68872		2	9606
TPPYADPSLQAPVR	0	1	Unmodified	1510.778	0.77799256	1108	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	4	0				1													15.651	15.651	2	0.0058453	9422	DP690-4	111.52	72.945			NaN	NaN	NaN	0	0	Median	7871300	7871300	0	14487	1108	13529	28480	68874;68875	68874		2	9606
TPQAFVHPSEQDGER	0	1	Unmodified	1696.7805	0.78051176	2015	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	0	0	4	0				3													11.88	11.88	2;3	0.00032733	4537	DP690-4	98.676	83.289			0.80927	0.91518	NaN	1	0	Median	28650000	15242000	13408000	14488	2015	13530	28481;28482;28483	68876;68877;68878;68879;68880	68876		5	9606
TPQAPASANLVGPR	0	1	Unmodified	1377.7365	0.7364621	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	9	0									2								13.719	13.719	2	0.00079974	6759	DP690-9	139.31	57.782			NaN	NaN	NaN	0	0	Median	24460000	13917000	10544000	14489	2422	13531	28484;28485	68881;68882;68883	68882		3	9606
TPQASTYSYETSDLCYTAEK	1	0	Unmodified	2313.9947	0.99472279	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	10	0										1							16.355	16.355	2	5.6899E-05	11502	DP690-10	169.15	155.28			NaN	NaN	NaN	0	0	Median	9721700	9721700	0	14490	763	13532	28486	68884;68885	68884		2	9606
TPQCEPQAPEMLQR	0	1	Oxidation (M)	1699.7658	0.76578967	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	1	0	3	0			1														12.808	12.808	2	0.00024946	5602	DP690-3	120.03	87.303			0.74599	0.84677	NaN	1	0	Median	11058000	6781900	4275900	14491	1076	13533	28487	68886;68887;68888;68889	68889	1684	4	9606
TPQCEPQAPEMLQR	0	1	Unmodified	1683.7709	0.77087505	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	3	0			1														14.586	14.586	2	0.022717	8112	DP690-3	97.779	64.588			NaN	NaN	NaN	0	0	Median	0	0	0	14492	1076	13533	28488	68890	68890		1	9606
TPQEAIMDGTEIAVSPR	0	1	Oxidation (M)	1829.8829	0.88292792	1126	Q06587	RING1	E3 ubiquitin-protein ligase RING1	yes	yes	0	1	0	13	0													1				16.678	16.678	2	7.8975E-06	11088	DP690-13	131.53	108.96			0.80791	0.99347	NaN	1	0	Median	25581000	14363000	11218000	14493	1126	13534	28489	68891;68892;68893	68891	1750	3	9606
TPQEAITDGLEIVVSPR	0	1	Unmodified	1823.9629	0.9628928	1938	Q99496	RNF2	E3 ubiquitin-protein ligase RING2	yes	yes	0	0	0	14	0														1			21.212	21.212	2	3.0319000000000003E-33	17158	DP690-14	311	287.49			1.1238	1.3628	NaN	1	0	Median	26764000	12732000	14032000	14494	1938	13535	28490	68894;68895;68896	68896		3	9606
TPQQTSASQQMLNFPDKGK	2	0	Oxidation (M)	2121.0161	0.016067355	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	1	1	10	0										1							12.649	12.649	3	1.2465E-11	6026	DP690-10	164.58	145.51			0.72226	0.8907	NaN	1	0	Median	93962000	49066000	44896000	14495	1710	13536	28491	68897;68898;68899;68900;68901	68898	2304	5	9606
TPQSQQSAYFLLTLFR	0	1	Unmodified	1898.989	0.98904797	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								23.811	23.811	2	0.013162	19336	DP690-9	100.22	47.099			NaN	NaN	NaN	0	0	Median	619840	619840	0	14496	1453	13537	28492	68902	68902		1	9606
TPQVIGVMQSQNSSAGNR	0	1	Oxidation (M)	1888.9061	0.90612297	334	O95639	CPSF4	Cleavage and polyadenylation specificity factor subunit 4	yes	yes	0	1	0	15	0															1		12.724	12.724	2	5.6713E-23	5657	DP690-15	229.23	200.85			0.68734	0.79407	NaN	1	0	Median	11186000	5659600	5526200	14497	334	13538	28493	68903;68904;68905;68906	68904	347	4	9606
TPSFGISAPQVSIPDVNVNLK	1	0	Unmodified	2182.1634	0.16338352	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								21.035	21.035	2	6.1869E-07	16104	DP690-9	141.85	141.85			0.54331	0.67187	NaN	1	0	Median	3672100	1982200	1689900	14498	1145	13539	28494	68907;68908	68907		2	9606
TPSGSHSGPVPSQGLV	0	0	Unmodified	1505.7474	0.74742071	2525	Q9Y6V7	DDX49	Probable ATP-dependent RNA helicase DDX49	yes	yes	0	0	0	13	0													1				14.174	14.174	2	5.0132E-05	7562	DP690-13	155	121.78			NaN	NaN	NaN	0	0	Median	0	0	0	14499	2525	13540	28495	68909;68910	68910		2	9606
TPSLDAEGSNCPATK	1	0	Unmodified	1546.6933	0.69333623	88	O00468	AGRN	Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment	yes	yes	0	0	0	9	0									1								12.253	12.253	2	0.00026134	4844	DP690-9	144.57	97.27			NaN	NaN	NaN	0	0	Median	1325700	1325700	0	14500	88	13541	28496	68911;68912	68911		2	9606
TPSLTVFLLGQSAR	0	1	Unmodified	1488.83	0.83002813	579	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	10	0										2							21.292	21.292	2	8.3506E-07	18482	DP690-10	193.28	152.29			0.60849	0.75846	NaN	1	0	Median	37971000	22586000	15385000	14501	579	13542	28497;28498	68913;68914;68915;68916	68913		4	9606
TPSNELYKPLR	1	1	Unmodified	1316.7089	0.70885036	1739	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	1	3	0			1														12.737	12.737	3	0.0040178	5623	DP690-3	80.24	51.282			0.77624	0.86091	NaN	1	0	Median	66487000	39918000	26568000	14502	1739	13543	28499	68917;68918;68919	68917		3	9606
TPSQDSDYINANFIK	1	0	Unmodified	1711.8053	0.80532952	1116	Q05209	PTPN12	Tyrosine-protein phosphatase non-receptor type 12	yes	yes	0	0	0	3	0			1														17.514	17.514	2	0.0049053	12046	DP690-3	115.92	74.84			NaN	NaN	NaN	0	0	Median	4250700	4250700	0	14503	1116	13544	28500	68920	68920		1	9606
TPSSDVLVFDYTK	1	0	Unmodified	1470.7242	0.72422566	1142;1360	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	13	0													1				18.621	18.621	2	3.9996E-10	13683	DP690-13	234.9	207.85			0.69828	0.75885	NaN	1	0	Median	381510000	222070000	159440000	14504	1142;1360	13545	28501	68921;68922	68921		2	9606
TPSTVTLNNNSAPANR	0	1	Unmodified	1655.8227	0.82271092	2387	Q9ULH0	KIDINS220	Kinase D-interacting substrate of 220 kDa	yes	yes	0	0	0	9	0									2								12.194	12.194	2	8.5892E-18	4827	DP690-9	199.82	144.02			NaN	NaN	NaN	0	0	Median	1831600	1831600	0	14505	2387	13546	28502;28503	68923;68924;68925	68924		3	9606
TPTAPAVNLAGAR	0	1	Unmodified	1237.6779	0.67788459	2422	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	9	0									1								14.332	14.332	2	7.8481E-05	7617	DP690-9	151.83	151.83			0.79176	0.98271	NaN	1	0	Median	20166000	10670000	9496000	14506	2422	13547	28504	68926;68927;68928;68929	68928		4	9606
TPTCQSSTDCSPYAR	0	1	Unmodified	1729.7036	0.70358334	310	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	11	0											1						11.366	11.366	2	3.0035E-20	4057	DP690-11	295.26	270.14			0.70984	0.84753	NaN	1	0	Median	32342000	18797000	13545000	14507	310	13548	28505	68930;68931;68932;68933	68932		4	9606
TPTLASTPIPPTPQAPSPAVDAEIR	0	1	Unmodified	2526.333	0.33296804	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										1							18.382	18.382	2	4.930499999999999E-38	14395	DP690-10	228.51	210.12			0.45377	0.56628	NaN	1	0	Median	68700000	46223000	22478000	14508	781	13549	28506	68934;68935;68936;68937	68934		4	9606
TPVEEVPAAIAPFQGR	0	1	Unmodified	1680.8835	0.88352026	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10.2	0.829									1	1	2						18.502	18.502	2	4.3213E-18	13028	DP690-9	205.13	146.43			0.63616	0.76077	2.2582	2	0	Median	320170000	203620000	116550000	14509	1329	13550	28507;28508;28509;28510	68938;68939;68940;68941;68942;68943;68944;68945	68944		8	9606
TPVEPEVAIHR	0	1	Unmodified	1246.667	0.66698555	928	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	12	4								2								2	12.675	12.675	2;3	7.2439E-07	5364	DP690-8	195.51	157.21			0.76387	0.76936	6.0093	4	0	Linear	1939199999.9999998	1096200000	843000000	14510	928	13551	28511;28512;28513;28514	68946;68947;68948;68949;68950;68951;68952;68953;68954;68955;68956;68957;68958;68959;68960;68961	68957		16	9606
TPVEVPVGGFK	1	0	Unmodified	1128.6179	0.61791009	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8.25	3.77		1							1	1		1					16.001	16.001	2	0.00017355	10971	DP690-10	146.69	119.8			0.71363	0.78953	3.0853	4	0	Median	798940000	450850000	348090000	14511	1319	13552	28515;28516;28517;28518	68962;68963;68964;68965;68966;68967;68968;68969;68970;68971	68962		10	9606
TPVIDADKPVSSQLR	1	1	Unmodified	1624.8784	0.87843489	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								13.874	13.874	2	0.0022688	7021	DP690-9	140.63	78.978			NaN	NaN	NaN	0	0	Median	4001800	4001800	0	14512	1264	13553	28519	68972;68973	68972		2	9606
TPVLFDIYEIK	1	0	Unmodified	1336.7279	0.72785447	828	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	4	0				1													21.325	21.325	2	0.00037556	16239	DP690-4	117.52	85.99			0.94289	1.0218	NaN	1	0	Median	8818200	4521100	4297100	14513	828	13554	28520	68974;68975	68974		2	9606
TPVPSDIDISR	0	1	Unmodified	1198.6194	0.61936665	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	11	0											1						15.212	15.212	2	2.6939E-06	9680	DP690-11	205.59	154.39			0.7839	0.80306	NaN	1	0	Median	856980000	486780000	370200000	14514	470	13555	28521	68976;68977;68978;68979;68980;68981;68982	68980		7	9606
TPVQYSQQQNSPQK	1	0	Unmodified	1631.7903	0.79034816	749	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	11	0											1						10.627	10.627	2	0.039771	2995	DP690-11	91.937	53.187			NaN	NaN	NaN	0	0	Median	0	0	0	14515	749	13556	28522	68983	68983		1	9606
TPVTDPATGAVK	1	0	Unmodified	1155.6136	0.61355299	800	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1													11.922	11.922	2	8.3067E-05	4584	DP690-4	125.68	82.818			0.684	0.74284	NaN	1	0	Median	23992000	14821000	9170900	14516	800	13557	28523	68984;68985;68986;68987	68987		4	9606
TPVTQVNEVTGTLR	0	1	Unmodified	1513.81	0.81002097	1202	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	yes	yes	0	0	0	16	0																1	15.936	15.936	2	2.1922E-05	9797	DP690-16	128.88	128.88			0.75109	0.86803	NaN	1	0	Median	26287000	14153000	12134000	14517	1202	13558	28524	68988;68989	68988		2	9606
TPVVQNAASIVQPSPAHVGQQGLSK	1	0	Unmodified	2512.3398	0.33978476	1763	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	12	0												1					15.247	15.247	3	4.2026999999999994E-46	9310	DP690-12	241.6	212.98			1.0036	1.1965	NaN	1	0	Median	55342000	26915000	28427000	14518	1763	13559	28525	68990;68991	68990		2	9606
TQAFQVLLQPLACVLK	1	0	Unmodified	1828.0281	0.028076012	1500	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	0	0	3	0			1														24.091	24.091	2	0.057569	19773	DP690-3	83.045	51.86			NaN	NaN	NaN	0	0	Median	576700	0	576700	14519	1500	13560	28526	68992	68992		1	9606
TQAIVCQQLDLTHLK	1	0	Unmodified	1766.9349	0.93490391	943	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	12	0												1					16.771	16.771	3	0.00039335	11486	DP690-12	95.067	77.602			0.95859	1.1212	NaN	1	0	Median	96466000	48915000	47551000	14520	943	13561	28527	68993;68994	68994		2	9606
TQASSSFQDSSQPAGK	1	0	Unmodified	1624.7329	0.73289286	752	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	11	0											2						10.807	10.807	2	0.0097074	3254	DP690-11	163.45	123.57			NaN	NaN	NaN	0	0	Median	0	0	0	14521	752	13562	28528;28529	68995;68996	68995		2	9606
TQAVFNHTEDYVLLPDER	0	1	Unmodified	2146.0331	0.033097627	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	13	0													4				17.621	17.621	2;3	4.5838E-160	12301	DP690-13	360.74	265.46			0.83142	0.92454	NaN	1	0	Median	398750000	211580000	187170000	14522	1114	13563	28530;28531;28532;28533	68997;68998;68999;69000;69001;69002;69003;69004	69001		8	9606
TQDASGPELILPASIEFR	0	1	Unmodified	1943	6.5851002E-06	895	P55196	MLLT4	Afadin	yes	yes	0	0	0	10	0										1							21.329	21.329	2	2.8194E-11	18493	DP690-10	172.09	150.42			0.48174	0.60135	NaN	1	0	Median	27961000	18209000	9752100	14523	895	13564	28534	69005	69005		1	9606
TQDECILHFLR	0	1	Unmodified	1430.6976	0.69763375	1710;1796	Q8TAQ2;Q92922	SMARCC2;SMARCC1	SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1	no	no	0	0	0	10.8	0.4										1	4						18.03	18.03	3	0.00030693	13788	DP690-10	107.55	76.826			0.79522	0.9077	NaN	1	0	Median	384850000	220140000	164700000	14524	1710;1796	13565	28535;28536;28537;28538;28539	69006;69007;69008;69009;69010;69011;69012;69013	69007		8	9606
TQEQCVHNETKNELEK	2	0	Unmodified	1985.9113	0.91126793	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	1	3	0			1														10.389	10.389	4	0.064888	2594	DP690-3	65.528	43.314			0.606	0.65239	NaN	1	0	Median	32392000	19364000	13029000	14525	203	13566	28540	69014	69014		0	9606
TQETPSAQMEGFLNR	0	1	Oxidation (M)	1723.7835	0.78354822	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										1							14.594	14.594	2	0.00032166	8908	DP690-10	117.95	92.606			0.99722	1.2454	NaN	1	0	Median	29435000	14303000	15131000	14526	1080	13567	28541	69015;69016	69015	1698	2	9606
TQFLQNMQTASGGPQPR	0	1	Oxidation (M)	1875.8897	0.88974463	1529	Q7L2K0	C16orf59	Uncharacterized protein C16orf59	yes	yes	0	1	0	13	0													1				13.36	13.36	2	0.00033838	6455	DP690-13	137.81	107.78			NaN	NaN	NaN	0	0	Median	6118800	6118800	0	14527	1529	13568	28542	69017	69017	2205	1	9606
TQFNSLQQLVAYYSK	1	0	Unmodified	1788.9046	0.90464964	477	P12931	SRC	Proto-oncogene tyrosine-protein kinase Src	yes	yes	0	0	0	12	0												1					22.235	22.235	2	0.0072447	18650	DP690-12	74.537	61.77			0.6336	0.76766	NaN	1	0	Median	3815000	2310400	1504600	14528	477	13569	28543	69018	69018		1	9606
TQFSDVLDLYLGTHFK	1	0	Unmodified	1882.9465	0.94651445	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									2								22.601	22.601	3	0.071301	17934	DP690-9	50.252	24.122			NaN	NaN	NaN	0	0	Median	1458500	1458500	0	14529	2272	13570	28544;28545	69019;69020;69021	69020		3	9606
TQGFLALFSGDTGEIK	1	0	Unmodified	1682.8516	0.85155143	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	13	0													1				22.115	22.115	2	7.7658E-05	18069	DP690-13	157.09	157.09			0.88077	1.0185	NaN	1	0	Median	55744000	31832000	23913000	14530	2427	13571	28546	69022;69023;69024;69025	69024		4	9606
TQGNVFATDAILATLMSCTR	0	1	Oxidation (M)	2185.0507	0.050738302	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	1	0	12	0												1					22.528	22.528	2	1.3978E-11	18900	DP690-12	167.18	143.36			0.91624	1.1031	NaN	1	0	Median	17954000	9052600	8901400	14531	154	13572	28547	69026;69027;69028	69027	174	3	9606
TQIALSPNNHEVHIYKK	2	0	Unmodified	1991.0589	0.058858868	1786	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	yes	yes	0	0	1	14	0														1			12.017	12.017	4	0.0014879	4760	DP690-14	73.498	43.07			0.61802	0.6923	NaN	1	0	Median	58850000	33270000	25580000	14532	1786	13573	28548	69029	69029		1	9606
TQIAPGSQTVLGIGPGPADLIDKVTGHLK	2	0	Unmodified	2882.5866	0.58655697	2473	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	yes	yes	0	0	1	16	0																1	20.756	20.756	4	2.0546E-05	15537	DP690-16	83.467	83.467			0.50607	0.58385	NaN	1	0	Median	7058400	4421700	2636700	14533	2473	13574	28549	69030;69031;69032;69033	69032		4	9606
TQILAASYELHK	1	0	Unmodified	1372.7351	0.73506511	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							14.508	14.508	3	0.00073146	8821	DP690-10	81.239	68.361			0.9066	1.0964	NaN	1	0	Median	197690000	106680000	91011000	14534	1080	13575	28550	69034;69035;69036;69037	69035		4	9606
TQLASWSDPTEETGPVAGILDTETLEK	1	0	Unmodified	2887.3975	0.39747837	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.707									1	2	1						21.905	21.905	2	3.7289E-32	16996	DP690-9	197.1	180.18			0.58871	0.72727	4.5708	2	0	Median	17878000	10456000	7422500	14535	1319	13576	28551;28552;28553;28554	69038;69039;69040;69041;69042;69043;69044;69045;69046	69044		9	9606
TQLEELEDELQATEDAK	1	0	Unmodified	1960.9113	0.91131074	668;669	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	6	4		1								1							20.993	20.993	2	1.8562E-12	18065	DP690-10	245.5	207.97			1.3804	1.5326	39.6	2	0	Median	49636000	24022000	25614000	14536	668;669	13577	28555;28556	69047;69048;69049;69050;69051	69047		5	9606
TQLEWTEAILEDEQTQR	0	1	Unmodified	2088.9964	0.99637777	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	10.7	0.471										1	2						20.383	20.383	2	9.5706E-17	17215	DP690-11	193.06	150.97			0.69718	0.85411	NaN	1	0	Median	34132000	27104000	7028300	14537	2303	13578	28557;28558;28559	69052;69053;69054;69055	69055		3	9606
TQLYEYLQNR	0	1	Unmodified	1326.6568	0.65681479	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	12	0												1					17.005	17.005	2	4.1412E-05	11791	DP690-12	172.94	127.92			1.0339	1.1935	NaN	1	0	Median	126910000	61358000	65548000	14538	2450	13579	28560	69056;69057;69058;69059	69058		4	9606
TQMLDQEELLASTR	0	1	Oxidation (M)	1649.7931	0.79305028	648	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	1	0	3	0			1														16.32	16.32	2	0.0017519	10510	DP690-3	100.04	74.695			0.78133	0.88833	NaN	1	0	Median	11631000	7258100	4373000	14539	648	13580	28561	69060;69061;69062	69062	905	3	9606
TQPMFTESPQTASTTGSQR	0	1	Oxidation (M)	2069.9324	0.9323973	2569				yes	yes	0	1	0	10	0										1							15.003	15.003	2	0.030872	9526	DP690-10	92.295	44.181	+		NaN	NaN	NaN	0	0	Median	0	0	0	14540	2569	13581	28562	69063	69063	2985	1	9606
TQPMTAQAASYR	0	1	Unmodified	1323.6241	0.62413446	1910	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	11	0											1						12.522	12.522	2	0.027234	5739	DP690-11	94.363	61.47			NaN	NaN	NaN	0	0	Median	0	0	0	14541	1910	13582	28563	69064	69064		1	9606
TQPMTAQAASYR	0	1	Oxidation (M)	1339.619	0.61904908	1910	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	1	0	12	0												1					10.595	10.595	2	0.0055938	3005	DP690-12	89.827	72.359			0.7294	0.85827	NaN	1	0	Median	86838000	51812000	35026000	14542	1910	13582	28564	69065;69066	69066	2451	2	9606
TQQAAQANITLQEQIEAIHK	1	0	Unmodified	2234.1655	0.16550878	1334	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	11	0											1						16.643	16.643	3	0.0041465	11903	DP690-11	61.087	61.087			1.1214	1.3584	NaN	1	0	Median	67509000	28408000	39101000	14543	1334	13583	28565	69067	69067		1	9606
TQRPADVIFATVR	0	2	Unmodified	1472.81	0.80996139	653	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	1	7	4			1								1						16.393	16.393	3	0.0029754	11449	DP690-11	77.776	52.058			0.82009	0.92609	6.8114	2	0	Median	232790000	130240000	102550000	14544	653	13584	28566;28567	69068;69069;69070;69071;69072	69068		5	9606
TQSLPVTEK	1	0	Unmodified	1001.5393	0.53932542	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.5	0.5										1	1						11.502	11.502	2	0.0063609	4230	DP690-11	94.309	49.932			0.77429	0.9051	4.9815	2	0	Median	430950000	239970000	190980000	14545	2190	13585	28568;28569	69073;69074;69075;69076;69077;69078;69079;69080	69078		8	9606
TQSSASLAASYAAQQHPQAAASYR	0	1	Unmodified	2464.1731	0.17311336	1910	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	11.5	0.5											1	1					14.327	14.327	3	4.1912E-23	7993	DP690-12	190.57	170.13			0.82644	0.96929	4.8815	2	0	Median	244460000	129680000	114780000	14546	1910	13586	28570;28571	69081;69082;69083;69084;69085;69086	69085		6	9606
TQTAIASEDMPNTLTEAEK	1	0	Oxidation (M)	2064.9521	0.95212969	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										1							14.33	14.33	2	3.2323E-31	8531	DP690-10	257.81	257.81			0.63823	0.7846	NaN	1	0	Median	46318000	28041000	18277000	14547	1080	13587	28572	69087;69088;69089;69090	69087	1699	4	9606
TQTAIASEDMPNTLTEAEK	1	0	Unmodified	2048.9572	0.95721507	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							16.39	16.39	2	4.3953E-37	11578	DP690-10	285.81	285.81			0.57127	0.70316	NaN	1	0	Median	50312000	30469000	19843000	14548	1080	13587	28573	69091;69092;69093;69094	69091		4	9606
TQTAVASEEGPATLPEAEALLAQHAALR	0	1	Unmodified	2844.4618	0.46175038	130	O15020	SPTBN2	Spectrin beta chain, non-erythrocytic 2	yes	yes	0	0	0	10	0										1							20.047	20.047	3	7.9629E-06	16739	DP690-10	112.26	112.26			0.92348	1.15	NaN	1	0	Median	20861000	9349200	11511000	14549	130	13588	28574	69095;69096;69097	69096		3	9606
TQTLDQENQQLQDQLR	0	1	Unmodified	1956.9501	0.95009628	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11.5	0.5											1	1					16.057	16.057	2	1.9142E-71	10436	DP690-12	371.89	323.7			0.83307	1.0002	7.421	2	0	Median	109190000	56753000	52435000	14550	2024	13589	28575;28576	69098;69099;69100;69101;69102;69103	69102		6	9606
TQTPPVEENVTQK	1	0	Unmodified	1469.7362	0.73618733	1488	Q6P1Q9	METTL2B	Methyltransferase-like protein 2B	yes	yes	0	0	0	10	4						1								1			12.02	12.02	2	0.00016299	4849	DP690-14	157.68	89.052			0.7282	0.82158	NaN	1	0	Median	31892000	21826000	10066000	14551	1488	13590	28577;28578	69104;69105;69106;69107;69108;69109;69110	69104		7	9606
TQTPPVSPAPQPTEER	0	1	Unmodified	1733.8584	0.85842773	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	10.2	3.12				1							1	3					12.477	12.477	2	4.1788E-18	5427	DP690-12	205.31	155.2			0.37042	0.44179	NaN	1	0	Median	51403000	39135000	12269000	14552	1267	13591	28579;28580;28581;28582;28583	69111;69112;69113;69114;69115;69116;69117;69118;69119;69120	69116		10	9606
TQTSDPAMLPTMIGLLAEAGVR	0	1	2 Oxidation (M)	2303.1501	0.150118	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	2	0	4	0				1													21.068	21.068	2	0.00020121	15872	DP690-4	119.56	100.35			1.2345	1.4268	NaN	1	0	Median	3817600	1679200	2138300	14553	167	13592	28584	69121;69122;69123;69124;69125;69126	69122	186;187	6	9606
TQVAGGQLSFK	1	0	Unmodified	1134.6033	0.60332266	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					14.317	14.317	2	0.00013088	8023	DP690-12	136.52	112			0.85802	0.93779	NaN	1	0	Median	274490000	142400000	132090000	14554	750	13593	28585	69127;69128;69129;69130	69129		4	9606
TQVTVQYMQDR	0	1	Oxidation (M)	1383.6453	0.64526383	634	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	1	0	5.2	0.4					4	1											12.327	12.327	2	7.6942E-05	4809	DP690-5	180.09	114.87			0.92576	1.0079	11.287	2	0	Median	106270000	50896000	55370000	14555	634	13594	28586;28587;28588;28589;28590	69131;69132;69133;69134;69135;69136;69137	69131	871	7	9606
TQVTVQYMQDR	0	1	Unmodified	1367.6503	0.65034921	634	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	5	0					1												14.143	14.143	2	0.00053846	7006	DP690-5	112.3	80.874			1.2297	1.2781	NaN	1	0	Median	72652000	34312000	38341000	14556	634	13594	28591	69138	69138		1	9606
TRAEVKFEGDTLVNR	1	2	Unmodified	1733.906	0.90604662	57	CON__Q9U6Y5			yes	yes	0	0	2	6	1					1		1										13.185	13.185	3	1.0725E-05	6088	DP690-7	144.41	104.19		+	0.040809	0.044644	NaN	1	0	Median	350020000	269300000	80718000	14557	57	13595	28592;28593	69139;69140;69141;69142;69143	69143		5	
TRDDWLVSWVQSYCR	0	2	Unmodified	1969.9105	0.91048007	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									2								21.34	21.34	2;3	3.8415E-06	16438	DP690-9	158.29	158.29			0.81608	0.88459	6.2916	2	0	Median	25664000	13864000	11800000	14558	1046	13596	28594;28595	69144;69145;69146;69147;69148;69149;69150;69151	69145		8	9606
TRHDEYLEVTK	1	1	Unmodified	1389.6888	0.6888432	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	1	5.5	3.5		1							1								10.855	10.855	3	3.7251E-05	3192	DP690-9	150.51	112.52			0.8389	0.89637	5.1097	2	0	Median	30280000	18791000	11489000	14559	1048	13597	28596;28597	69152;69153;69154;69155;69156	69154		5	9606
TRIEGLLAAFPK	1	1	Unmodified	1314.766	0.76597131	775	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	1	12	0												1					18.347	18.347	2	0.056119	13620	DP690-12	73.499	40.749			0.84927	1.0746	NaN	1	0	Median	17997000	9275400	8722000	14560	775	13598	28598	69157	69157		1	9606
TRLEQEIATYR	0	2	Unmodified	1378.7205	0.72047768	40;29;45;50	CON__P02533;P02533;CON__A2A4G1;CON__Q61782;CON__P35900;CON__Q9D312;P35900;CON__Q04695;Q04695;CON__Q9QWL7;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8	KRT14;KRT20;KRT17;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 20;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16	no	no	0	0	1	10.3	6.02		1											1			1	14.539	14.539	2	1.1244E-05	8089	DP690-13	197.73	154.29		+	0.82713	0.94972	NaN	1	0	Median	156630000	98062000	58566000	14561	29;45;40;50	13599	28599;28600;28601	69158;69159;69160;69161;69162;69163	69159		6	9606
TRPAANPIQFTLNK	1	1	Unmodified	1569.8627	0.86272524	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	1	3	0			2														15.098	15.098	2;3	0.00071014	8744	DP690-3	115.34	115.34			0.65209	0.72322	2.7093	2	0	Median	51208000	28306000	22902000	14562	574	13600	28602;28603	69164;69165;69166;69167;69168;69169;69170;69171;69172	69170		9	9606
TRPDGNCFYR	0	2	Unmodified	1284.567	0.56695393	1856	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	1	6	0						1											11.088	11.088	2	0.046735	3557	DP690-6	80.688	68.161			0.79983	0.86023	NaN	1	0	Median	2682400	1478100	1204300	14563	1856	13601	28604	69173	69173		1	9606
TRPESICSVTPSTHDK	1	1	Unmodified	1813.8629	0.86286118	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	1	10	0										1							10.661	10.661	3	0.0099632	3213	DP690-10	119.04	100.84			0.69237	0.82242	NaN	1	0	Median	181790000	109060000	72728000	14564	2155	13602	28605	69174	69174		0	9606
TSACGLFSVCYPR	0	1	Unmodified	1516.6803	0.68026913	624	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	no	0	0	0	4	0				1													18.205	18.205	2	0.0016536	12555	DP690-4	95.483	64.871			1.7251	1.9635	NaN	1	0	Median	24052000	9047900	15005000	14565	624	13603	28606	69175;69176;69177	69175		3	9606
TSAEAPSHHLQQQQQQQR	0	1	Unmodified	2101.0049	0.0049258171	1781	Q92609	TBC1D5	TBC1 domain family member 5	yes	yes	0	0	0	11	0											1						10.22	10.22	3	7.1488E-10	2404	DP690-11	150.05	122.73			0.61696	0.76425	NaN	1	0	Median	8891500	4967100	3924500	14566	1781	13604	28607	69178;69179;69180	69179		3	9606
TSALQEEADSIQR	0	1	Unmodified	1446.6951	0.69505079	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								15.294	15.294	2	0.00032074	8929	DP690-9	113.38	76.695			0.72671	0.9081	NaN	1	0	Median	11002000	5898400	5103700	14567	1762	13605	28608	69181;69182	69181		2	9606
TSALSDETKNNWEVSALSR	1	1	Unmodified	2107.0182	0.018175845	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9	0									1								16.406	16.406	3	2.3301E-18	10356	DP690-9	183.71	153.06			0.95629	1.1091	NaN	1	0	Median	33398000	15161000	18237000	14568	1046	13606	28609	69183	69183		0	9606
TSASEGNPYVSSTLSVPASPR	0	1	Unmodified	2106.0229	0.022926872	1561	Q86SQ0	PHLDB2	Pleckstrin homology-like domain family B member 2	yes	yes	0	0	0	10	0										1							16.586	16.586	2	0.020352	11834	DP690-10	92.8	47.953			NaN	NaN	NaN	0	0	Median	0	0	0	14569	1561	13607	28610	69184	69184		1	9606
TSASLEMNQGVSEER	0	1	Oxidation (M)	1652.7312	0.7311783	2115	Q9H410	DSN1	Kinetochore-associated protein DSN1 homolog	yes	yes	0	1	0	14	0														1			11.697	11.697	2	1.2192E-11	4321	DP690-14	185.3	152.11			NaN	NaN	NaN	0	0	Median	7718500	7718500	0	14570	2115	13608	28611	69185;69186	69185	2619	2	9606
TSCGSPNYAAPEVISGR	0	1	Unmodified	1764.8101	0.81009732	1183	Q13131;P54646	PRKAA1;PRKAA2	5'-AMP-activated protein kinase catalytic subunit alpha-1;5'-AMP-activated protein kinase catalytic subunit alpha-2	yes	no	0	0	0	8	4				1								1					14.954	14.954	2	1.5542E-07	8944	DP690-12	165.51	146.7			0.8031	0.94844	14.358	2	0	Median	29108000	17949000	11159000	14571	1183	13609	28612;28613	69187;69188;69189;69190;69191;69192	69187		6	9606
TSDFNTFLAQEGCTK	1	0	Unmodified	1717.7618	0.76175015	2343	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	6	0						1											17.811	17.811	2	1.909E-05	11553	DP690-6	149.23	137.36			0.79714	0.90628	NaN	1	0	Median	7034200	3871700	3162500	14572	2343	13610	28614	69193;69194;69195;69196	69195		4	9606
TSDIFGSPVTATSR	0	1	Unmodified	1437.71	0.70997257	2139	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	7.5	0.5							1	1									16.305	16.305	2	4.0845E-05	9990	DP690-7	125.97	95.578			0.8144	0.93824	6.6188	2	0	Median	50638000	25606000	25032000	14573	2139	13611	28615;28616	69197;69198;69199;69200;69201	69197		5	9606
TSDLIVLGLPWK	1	0	Unmodified	1340.7704	0.77038799	1185	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	13.5	0.5													1	1			22.187	22.187	2	1.1207E-05	18137	DP690-13	192.91	173.95			0.76835	0.91068	0.017669	2	0	Median	54240000	30326000	23914000	14574	1185	13612	28617;28618	69202;69203;69204;69205;69206;69207;69208;69209;69210;69211	69203		10	9606
TSDVGGYYYEK	1	0	Unmodified	1280.5561	0.55609769	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	10	0										1							13.765	13.765	2	0.0036475	7692	DP690-10	90.827	73.913			0.87796	1.083	NaN	1	0	Median	94440000	53020000	41420000	14575	763	13613	28619	69212;69213;69214	69213		3	9606
TSEEEKNGSEELVEK	2	0	Unmodified	1706.7847	0.78465366	2087	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	1	13	0													2				10.646	10.646	2;3	0.00045433	2998	DP690-13	95.854	49.149			0.80154	0.90204	NaN	1	0	Median	53160000	26841000	26318000	14576	2087	13614	28620;28621	69215;69216	69215		2	9606
TSEFMPYVVFIAAPELETLR	0	1	Oxidation (M)	2328.1712	0.17117101	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	1	0	12	0												1					23.997	23.997	2	1.4372E-13	20545	DP690-12	185.66	185.66			0.80136	0.97752	NaN	1	0	Median	7307400	4515500	2791900	14577	2280	13615	28622	69217;69218;69219;69220;69221;69222;69223;69224;69225	69219	2732	9	9606
TSEFTAAFVGR	0	1	Unmodified	1184.5826	0.58258722	1908	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	3	0			1														17.039	17.039	2	0.00011943	11416	DP690-3	134.77	55.053			0.55345	0.62668	NaN	1	0	Median	28661000	18736000	9925200	14578	1908	13616	28623	69226;69227;69228;69229	69229		4	9606
TSEQTGEPAEDTSGVIK	1	0	Unmodified	1747.8112	0.81120276	2251	Q9NX74	DUS2	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	yes	yes	0	0	0	4	0				1													13.049	13.049	2	0.001089	5928	DP690-4	91.62	65.503			0.97471	1.0471	NaN	1	0	Median	5156300	2166600	2989700	14579	2251	13617	28624	69230;69231	69231		2	9606
TSESLCQNNMVILK	1	0	Oxidation (M)	1651.7909	0.79094179	128	O14980	XPO1	Exportin-1	yes	yes	0	1	0	3	0			1														14.527	14.527	2	0.0069142	8035	DP690-3	115.57	64.769			NaN	NaN	NaN	0	0	Median	0	0	0	14580	128	13618	28625	69232	69232	148	1	9606
TSEVIEDEKQFYSK	2	0	Acetyl (Protein N-term)	1743.8203	0.82031088	2016	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	yes	yes	1	0	1	15	0															3		18.008	18.008	2	0.0016995	12652	DP690-15	128.68	93.715			NaN	NaN	NaN	0	0	Median	2956700	0	2956700	14581	2016	13619	28626;28627;28628	69233;69234;69235;69236	69233		4	9606
TSFEIAELKER	1	1	Unmodified	1321.6878	0.68778057	333	O95619	YEATS4	YEATS domain-containing protein 4	yes	yes	0	0	1	15	0															1		15.238	15.238	3	0.014541	9149	DP690-15	60.301	43.134			0.79646	0.921	NaN	1	0	Median	27298000	13951000	13348000	14582	333	13620	28629	69237;69238;69239	69237		3	9606
TSFFQALGITTK	1	0	Unmodified	1312.7027	0.70270235	385	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	10	4						1								1			21.221	21.221	2	0.00025072	17192	DP690-14	169.99	145.22			0.97036	1.1021	NaN	1	0	Median	335390000	166980000	168410000	14583	385	13621	28630;28631	69240;69241;69242;69243;69244	69243		5	9606
TSFHALTSILK	1	0	Unmodified	1216.6816	0.68157298	1101	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	15	0															2		16.779	16.779	2;3	0.0010023	11188	DP690-15	114.4	65.978			1.2604	1.467	69.378	2	0	Median	88527000	44712000	43815000	14584	1101	13622	28632;28633	69245;69246;69247;69248	69248		4	9606
TSFIQYLLEQEVPGSR	0	1	Unmodified	1865.9523	0.95232811	2278	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	12	0												1					23.966	23.966	2	0.0055217	20522	DP690-12	123.95	110.01			NaN	NaN	NaN	0	0	Median	719130	719130	0	14585	2278	13623	28634	69249;69250;69251	69250		3	9606
TSFLDDAFR	0	1	Unmodified	1070.5033	0.50327426	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								19.002	19.002	2	0.034742	13620	DP690-9	72.23	49.49			1.1114	1.2579	27.784	2	0	Median	10212000	4786000	5426000	14586	1264	13624	28635;28636	69252;69253;69254;69255	69254		4	9606
TSFLDDAFRK	1	1	Unmodified	1198.5982	0.59823728	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9.5	0.5									1	1							16.459	16.459	2;3	0.0061868	10401	DP690-9	96.668	57.914			1.6014	1.9007	68.778	2	0	Median	40430000	17628000	22802000	14587	1264	13625	28637;28638	69256;69257	69257		2	9606
TSFLLNLR	0	1	Unmodified	962.55492	0.5549159	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						18.765	18.765	2	0.0092875	14813	DP690-11	120.49	74.118			NaN	NaN	NaN	0	0	Median	42455000	0	42455000	14588	65	13626	28639	69258;69259;69260	69258		3	9606
TSFTPVGDVFELNFMNVK	1	0	Oxidation (M)	2059.9925	0.99247837	376	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	1	0	12	0												1					22.294	22.294	2	0.0019885	18678	DP690-12	89.44	76.563			0.70277	0.85152	NaN	1	0	Median	3872700	2045400	1827300	14589	376	13627	28640	69261;69262	69261	401	2	9606
TSGHVDKFADFMVK	2	0	Oxidation (M)	1596.7606	0.76062794	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	1	1	3	0			1														13.441	13.441	3	0.006814	6564	DP690-3	70.134	44.9			0.89948	0.96702	NaN	1	0	Median	37195000	16972000	20223000	14590	720	13628	28641	69263;69264;69265	69264	1056	3	9606
TSGNVEDDLIIFPDDCEFK	1	0	Unmodified	2212.9834	0.98342982	1352	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	0	5	0					1												21.563	21.563	2	0.043592	16311	DP690-5	90.229	58.507			NaN	NaN	NaN	0	0	Median	0	0	0	14591	1352	13629	28642	69266	69266		1	9606
TSGSVYITLK	1	0	Unmodified	1067.5863	0.58627561	687	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	12	4								1								1	15.245	15.245	2	0.001795	8848	DP690-16	103.55	103.55			0.81844	0.92707	4.0062	2	0	Median	68802000	35674000	33128000	14592	687	13630	28643;28644	69267;69268;69269;69270;69271	69268		5	9606
TSGSVYITLKK	2	0	Unmodified	1195.6812	0.68123863	687	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	1	16	0																2	12.692	12.692	2;3	0.0060176	5542	DP690-16	92.538	67.102			0.92286	1.0469	NaN	1	0	Median	39516000	13283000	26233000	14593	687	13631	28645;28646	69272;69273;69274	69272		3	9606
TSGTEPADFALPSSR	0	1	Unmodified	1534.7264	0.72635092	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	10	0										1							16.159	16.159	2	0.006345	11327	DP690-10	108.56	63.583			NaN	NaN	NaN	0	0	Median	51662000	51662000	0	14594	1167	13632	28647	69275;69276	69276		2	9606
TSGTLISFIYPAQNPELLNK	1	0	Unmodified	2205.1681	0.16813455	1207	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	9.5	0.5									1	1							21.739	21.739	2	1.8891E-09	19144	DP690-10	145.61	127.15			0.54768	0.65761	30.141	2	0	Median	14979000	7589600	7389700	14595	1207	13633	28648;28649	69277;69278;69279;69280;69281	69279		5	9606
TSIAIDTIINQK	1	0	Unmodified	1315.7347	0.73473076	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	12.3	0.471												2	1				17.852	17.852	2	9.7765E-08	12584	DP690-13	226.09	226.09			0.88769	1.028	6.515	2	0	Median	200390000	100800000	99589000	14596	585	13634	28650;28651;28652	69282;69283;69284;69285;69286;69287;69288	69286		7	9606
TSIDAYDNFDNISLAQR	0	1	Unmodified	1941.9068	0.90683448	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	10	0										1							19.257	19.257	2	5.1269E-12	15691	DP690-10	182.23	144.44			NaN	NaN	NaN	0	0	Median	60730000	0	60730000	14597	1075	13635	28653	69289;69290	69290		2	9606
TSIEDQDELSSLLQVPLVAGTVNR	0	1	Unmodified	2583.3392	0.33917563	907	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	7	0							2										23.752	23.752	2	2.406E-05	18970	DP690-7	125.45	94.966			NaN	NaN	NaN	0	0	Median	0	0	0	14598	907	13636	28654;28655	69291;69292	69292		2	9606
TSILAAANPISGHYDR	0	1	Unmodified	1684.8533	0.85328277	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	11	0											2						16.156	16.156	3	0.024035	11135	DP690-11	53.565	43.616			0.92838	1.0739	NaN	1	0	Median	178350000	87172000	91178000	14599	1280	13637	28656;28657	69293;69294	69293		2	9606
TSISDLSEHVFDLILELYNIDSHLLLSVLPQLEFK	1	0	Unmodified	4040.1398	0.13980112	2214	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	10	0										1							30.268	30.268	4	0.010023	27578	DP690-10	39.516	39.516			NaN	NaN	NaN	0	0	Median	3768800	2119800	1649000	14600	2214	13638	28658	69295	69295		1	9606
TSIVQAAAGGVPGGGSNNGK	1	0	Unmodified	1740.8755	0.87547477	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	12.5	0.5												1	1				14.631	14.631	2	1.8252E-17	8225	DP690-13	201.4	201.4			0.64656	0.76459	4.1282	2	0	Median	54022000	30816000	23207000	14601	2194	13639	28659;28660	69296;69297;69298;69299;69300;69301;69302	69302		7	9606
TSLAGDTSNSSSPASTGAK	1	0	Unmodified	1737.8017	0.80170071	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	11.5	2.69									1	1	1					1	10.854	10.854	2	9.4386E-51	3173	DP690-9	330.68	298.64			0.69989	0.89815	5.2478	3	0	Plateau	51216000	30058000	21158000	14602	2411	13640	28661;28662;28663;28664	69303;69304;69305;69306;69307;69308;69309;69310;69311;69312;69313;69314	69312		12	9606
TSLALDESLFR	0	1	Unmodified	1250.6507	0.65066678	1566	Q86U42	PABPN1	Polyadenylate-binding protein 2	yes	yes	0	0	0	13	0													1				19.497	19.497	2	0.00045855	14739	DP690-13	114.86	95.072			0.90417	1.1088	NaN	1	0	Median	30474000	14706000	15768000	14603	1566	13641	28665	69315;69316;69317;69318	69316		4	9606
TSLEVPEINALLLVPK	1	0	Unmodified	1735.0131	0.013137454	1580	Q86W42	THOC6	THO complex subunit 6 homolog	yes	yes	0	0	0	14	0														1			23.111	23.111	2	6.2566E-06	19440	DP690-14	131.12	88.398			0.68904	0.81643	NaN	1	0	Median	12646000	7785800	4860200	14604	1580	13642	28666	69319;69320	69319		2	9606
TSLNPNDLGPLPPGWEER	0	1	Unmodified	1990.9749	0.97485447	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	3	0			1														19.321	19.321	2	0.00017983	14263	DP690-3	115.09	73.709			0.58998	0.6693	NaN	1	0	Median	10867000	7389500	3477900	14605	1911	13643	28667	69321;69322;69323;69324	69323		4	9606
TSLQQSLNEISGQSVAEQLQK	1	0	Unmodified	2287.1656	0.16556836	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9.5	0.5									1	1							19.858	19.858	2	6.1439E-54	16551	DP690-10	301.75	259.28			1.0152	1.2436	NaN	1	0	Median	29807000	13303000	16504000	14606	1762	13644	28668;28669	69325;69326;69327	69325		3	9606
TSLSAPPNSSSTENPK	1	0	Unmodified	1615.7689	0.76894402	1367	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	11	0											4						11.292	11.292	2	2.9912E-05	3967	DP690-11	176.87	124.38			NaN	NaN	NaN	0	0	Median	8633400	0	8633400	14607	1367	13645	28670;28671;28672;28673	69328;69329;69330;69331;69332;69333	69331		6	9606
TSLVEYLAAVTGR	0	1	Unmodified	1378.7456	0.7456298	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9.67	0.471									1	2							22.919	22.919	2	0.00014911	18302	DP690-9	155.53	135.25			1.2261	1.5271	26.589	2	0	Median	14171000	6518000	7652900	14608	2217	13646	28674;28675;28676	69334;69335;69336;69337;69338;69339;69340;69341;69342;69343	69342		10	9606
TSLVQLLAHLTGHTLK	1	0	Unmodified	1731.0043	0.004304102	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								21.077	21.077	3	0.0036655	16041	DP690-9	87.824	80.993			0.78735	1.0058	NaN	1	0	Median	10803000	5774400	5028100	14609	2217	13647	28677	69344;69345;69346;69347	69344		4	9606
TSMETALALEK	1	0	Oxidation (M)	1208.5959	0.59585402	1693	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	1	0	6	0						1											13.567	13.567	2	0.00016815	6344	DP690-6	132.01	104.88			0.91989	1.0313	NaN	1	0	Median	28317000	14165000	14152000	14610	1693	13648	28678	69348;69349;69350;69351	69350	2292	4	9606
TSMNVNEIFMAIAK	1	0	2 Oxidation (M)	1599.7637	0.7636644	542	P20339	RAB5A	Ras-related protein Rab-5A	yes	yes	0	2	0	15	0															1		19.645	19.645	2	0.032982	14691	DP690-15	67.879	38.105			0.94024	1.0904	NaN	1	0	Median	5017200	3022100	1995100	14611	542	13649	28679	69352	69352	690;691	1	9606
TSNFALVGSYTLSLSSVGNTK	1	0	Unmodified	2145.0954	0.095363533	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10	0										1							20.879	20.879	2	1.5023E-07	18002	DP690-10	143.88	124.11			0.83197	1.0213	NaN	1	0	Median	33185000	16419000	16767000	14612	2190	13650	28680	69353;69354;69355	69353		3	9606
TSNHLLGPKPFPLDR	1	1	Unmodified	1690.9155	0.91548909	195	O43913	ORC5	Origin recognition complex subunit 5	yes	yes	0	0	1	13	0													1				14.49	14.49	4	0.017829	8007	DP690-13	55.755	31.196			0.39329	0.47649	NaN	1	0	Median	34156000	24937000	9219100	14613	195	13651	28681	69356;69357	69356		2	9606
TSPADHGGSVGSESGGSAVDSVAGEHSVSGR	0	1	Unmodified	2839.2605	0.26048439	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	2	0		1															12.603	12.603	4	2.4489E-05	4892	DP690-2	68.211	60.138			0.85209	0.88909	NaN	1	0	Median	5148600	2370800	2777800	14614	1437	13652	28682	69358;69359	69358		2	9606
TSPQELSEELSR	0	1	Unmodified	1374.6627	0.66268803	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	3	0			1														16.293	16.293	2	0.016902	10376	DP690-3	99.973	65.218			NaN	NaN	NaN	0	0	Median	20837000	0	20837000	14615	1911	13653	28683	69360	69360		1	9606
TSQDFLFSQLQYLPFSNK	1	0	Unmodified	2162.0684	0.068420501	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										2							23.54	23.54	2	2.1038E-08	21383	DP690-10	169.3	123.94			NaN	NaN	NaN	0	0	Median	10467000	6125200	4342100	14616	1783	13654	28684;28685	69361;69362;69363	69361		3	9606
TSQLGSDHENTEEVSMR	0	1	Oxidation (M)	1934.8276	0.82759788	14	A6NJ78	METTL15	Probable methyltransferase-like protein 15	yes	yes	0	1	0	14	0														1			10.621	10.621	3	0.010041	2948	DP690-14	58.98	58.98			0.95261	1.183	NaN	1	0	Median	8995500	5729800	3265800	14617	14	13655	28686	69364	69364	17	1	9606
TSQLIPEMQEAFFQCQVCAHTTR	0	1	Oxidation (M)	2797.2622	0.26220442	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	1	0	11	0											1						18.297	18.297	3	0.018068	14192	DP690-11	69.913	48.306			NaN	NaN	NaN	0	0	Median	20352000	20352000	0	14618	651	13656	28687	69365	69365	909	1	9606
TSQLNVGTSTDVSLK	1	0	Unmodified	1548.7995	0.79951586	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							15.186	15.186	2	1.4402E-15	9779	DP690-10	247.13	214.4			0.9443	1.1396	4.0406	3	0	Plateau	261950000	135670000	126280000	14619	1270	13657	28688;28689;28690	69366;69367;69368;69369;69370;69371;69372;69373;69374;69375;69376	69369		11	9606
TSQNSELNNMQDLVEDYKK	2	0	Oxidation (M)	2271.0325	0.03250528	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	1	6.4	5.54	1	1		1					1							1	14.073	14.073	3	0.0032134	7232	DP690-4	103.17	73.86		+	NaN	NaN	NaN	0	0	Median	53438000	53438000	0	14620	44	13658	28691;28692;28693;28694;28695	69377;69378;69379;69380;69381;69382;69383;69384	69381	55	8	9606
TSQNSELNNMQDLVEDYKK	2	0	Unmodified	2255.0376	0.037590658	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	9	0									1								17.801	17.801	3	0.00045014	12143	DP690-9	105.2	80.497		+	NaN	NaN	NaN	0	0	Median	9274100	9274100	0	14621	44	13658	28696	69385;69386;69387	69386		3	9606
TSQPPVPQGEAEEDSQGK	1	0	Unmodified	1882.8545	0.85446456	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	9.5	0.5									1	1							11.917	11.917	2	4.7841E-13	5043	DP690-10	185.95	158.27			0.51948	0.63654	26.783	2	0	Median	43555000	28104000	15451000	14622	1158	13659	28697;28698	69388;69389;69390;69391;69392	69389		5	9606
TSQPPVPQGEAEEDSQGKEGPSGSGDSQLSASSR	1	1	Unmodified	3385.5142	0.51419248	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	1	10	0										1							13.04	13.04	3	0.00014487	6643	DP690-10	83.368	63.631			NaN	NaN	NaN	0	0	Median	0	0	0	14623	1158	13660	28699	69393	69393		1	9606
TSQSVSGEEIDAMDVQQLSQIVPK	1	0	Oxidation (M)	2604.2589	0.2588764	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	1	0	11	0											1						20.347	20.347	2	1.6583E-07	17041	DP690-11	147.7	108.66			NaN	NaN	NaN	0	0	Median	0	0	0	14624	1068	13661	28700	69394	69394	1663	1	9606
TSQTVATFLDELAQK	1	0	Unmodified	1650.8465	0.84646606	863	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	3	0			1														21.921	21.921	2	0.00040676	17506	DP690-3	108.98	108.98			1.0012	1.048	NaN	1	0	Median	3722900	1801700	1921200	14625	863	13662	28701	69395;69396;69397;69398	69398		4	9606
TSQVVEQDVPEEVDR	0	1	Unmodified	1728.8166	0.81662249	2528	Q9Y6X8	ZHX2	Zinc fingers and homeoboxes protein 2	yes	yes	0	0	0	11	0											2						14.557	14.557	2	0.00020435	8761	DP690-11	171.29	133.57			NaN	NaN	NaN	0	0	Median	24603000	24603000	0	14626	2528	13663	28702;28703	69399;69400	69399		2	9606
TSRPENAIIYNNNEDFQVGQAK	1	1	Unmodified	2507.2041	0.20407913	615	P29401	TKT	Transketolase	yes	yes	0	0	1	4	0				1													15.334	15.334	3	0.058504	9125	DP690-4	37.825	14.167			1.5257	1.7401	NaN	1	0	Median	6828300	2645800	4182500	14627	615	13664	28704	69401;69402	69402		2	9606
TSSAETPTIPLGSAVEAIK	1	0	Unmodified	1870.9888	0.9887732	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	11	0											2						19.022	19.022	2	0.0024213	15212	DP690-11	138.31	100.71			NaN	NaN	NaN	0	0	Median	0	0	0	14628	1375	13665	28705;28706	69403;69404	69404		2	9606
TSSAQVEGGVHSLHSYEK	1	0	Unmodified	1914.9072	0.90716883	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	6.67	3.77				2								1					12.055	12.055	3;4	2.9069E-17	4680	DP690-4	203.53	162.91			1.2154	1.2964	4.1375	2	0	Median	125130000	61785000	63346000	14629	474	13666	28707;28708;28709	69405;69406;69407;69408;69409;69410;69411	69409		7	9606
TSSCPVIFILDEFDLFAHHK	1	0	Unmodified	2375.162	0.16200331	196	O43929;CON__Q2YDI2	ORC4	Origin recognition complex subunit 4	yes	no	0	0	0	13	0													1				24.452	24.452	4	0.065452	20780	DP690-13	32.121	9.2188		+	0.8253	0.88741	NaN	1	0	Median	1012200	505910	506340	14630	196	13667	28710	69412	69412		1	9606
TSSFAEPGGGGGGGGGGPGGSASGPGGTGGGK	1	0	Unmodified	2432.0589	0.058871461	810	P49840	GSK3A	Glycogen synthase kinase-3 alpha	yes	yes	0	0	0	13	0													2				12.577	12.577	2	1.0789E-34	5378	DP690-13	177.09	147.18			NaN	NaN	NaN	0	0	Median	3018200	3018200	0	14631	810	13668	28711;28712	69413;69414;69415	69413		3	9606
TSSGDASSLSIEETNK	1	0	Unmodified	1624.7428	0.74278885	172	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	11	0											1						13.464	13.464	2	4.7839E-07	7135	DP690-11	160.86	142.33			0.93929	1.1413	NaN	1	0	Median	38806000	17943000	20863000	14632	172	13669	28713	69416;69417;69418	69416		3	9606
TSSMLEVDDEGGR	0	1	Oxidation (M)	1410.5933	0.59328784	1281	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	1	0	9	0									1								12.343	12.343	2	0.065708	4954	DP690-9	62.466	40.318			0.71613	0.89463	NaN	1	0	Median	3986000	2346400	1639600	14633	1281	13670	28714	69419	69419		1	9606
TSSSFAAAMAR	0	1	Oxidation (M)	1114.5077	0.50770771	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	0	2	0		1															10.97	10.97	2	0.0021708	3114	DP690-2	104.01	88.352			1.2709	1.324	NaN	1	0	Median	30288000	13162000	17126000	14634	602	13671	28715	69420;69421;69422;69423	69420	822	4	9606
TSSTSSSVNSQTLNR	0	1	Unmodified	1567.7438	0.7437919	2262	Q9NYJ8	TAB2	TGF-beta-activated kinase 1 and MAP3K7-binding protein 2	yes	yes	0	0	0	7	4			1								1						10.805	10.805	2	0.026103	3117	DP690-3	100.04	56.74			0.77273	0.93878	NaN	1	0	Median	19625000	11646000	7978900	14635	2262	13672	28716;28717	69424;69425	69425		1	9606
TSSVLGMSVESAPAVEEEKGEELEQK	2	0	Oxidation (M)	2778.3117	0.31169983	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	1	1	10	0										1							16.105	16.105	3	6.3006E-06	11157	DP690-10	119.34	87.743			NaN	NaN	NaN	0	0	Median	35631000	35631000	0	14636	1167	13673	28718	69426;69427	69427	1817	2	9606
TSSVSNPQDSVGSPCSR	0	1	Unmodified	1763.7744	0.7744401	786	P49023	PXN	Paxillin	yes	yes	0	0	0	4	0				1													11.869	11.869	2	4.5535E-09	4374	DP690-4	180.61	140			0.85591	0.99757	NaN	1	0	Median	14861000	8140300	6720800	14637	786	13674	28719	69428;69429;69430;69431	69430		4	9606
TSTILAAAR	0	1	Unmodified	902.51853	0.5185304	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	14	0														1			12.582	12.582	2	0.0014989	5549	DP690-14	120.46	120.46			0.89216	1.06	NaN	1	0	Median	116700000	57033000	59666000	14638	662	13675	28720	69432;69433	69433		2	9606
TSTPEDFIR	0	1	Unmodified	1064.5138	0.51383895	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															15.468	15.468	2	0.022132	8269	DP690-2	77.318	41.699			1.1832	1.2385	NaN	1	0	Median	6662900	2546000	4116800	14639	2482	13676	28721	69434;69435	69434		2	9606
TSTSAVPNLFVPLNTNPK	1	0	Unmodified	1899.0102	0.010177341	671	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	11	0											1						19.653	19.653	2	0.00713	16181	DP690-11	71.558	32.339			0.45787	0.56108	NaN	1	0	Median	21875000	13274000	8600900	14640	671	13677	28722	69436	69436		1	9606
TSTTGVATTQSPTPR	0	1	Unmodified	1503.7529	0.75290002	1753	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	10	0										1							10.821	10.821	2	1.4504E-05	3443	DP690-10	132.03	90.339			0.87237	1.09	NaN	1	0	Median	30969000	16469000	14500000	14641	1753	13678	28723	69437;69438;69439;69440;69441	69438		5	9606
TSVLAAANPIESQWNPK	1	0	Unmodified	1824.937	0.9370124	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	11	0											1						18.568	18.568	2	1.0678E-12	14562	DP690-11	205.02	205.02			0.91429	1.1156	NaN	1	0	Median	27193000	13536000	13658000	14642	651	13679	28724	69442;69443	69442		2	9606
TSVQPTFTASQYR	0	1	Unmodified	1484.726	0.72595699	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	2	0		1															14.529	14.529	2	0.00051093	7151	DP690-2	108.7	49.998			0.83106	0.84946	NaN	1	0	Median	3276300	1873400	1402900	14643	1437	13680	28725	69444	69444		1	9606
TSVQTEDDQLIAGQSAR	0	1	Unmodified	1817.8755	0.87553435	657;590	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	8.33	3.77			1								2						14.611	14.611	2	1.279E-108	8762	DP690-11	352.49	270.97			0.92911	1.0794	6.8173	2	0	Median	127600000	69583000	58012000	14644	657;590	13681	28726;28727;28728	69445;69446;69447;69448;69449;69450;69451;69452	69447		8	9606
TSYEEFTHK	1	0	Unmodified	1140.5088	0.50875357	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							12.064	12.064	2	0.0066504	5102	DP690-10	93.143	68.624			0.47467	0.58609	NaN	1	0	Median	57659000	46009000	11650000	14645	1492	13682	28729	69453;69454;69455	69454		3	9606
TSYLTELIDR	0	1	Unmodified	1209.6241	0.62411768	2518	Q9Y6E0;Q9P289	STK24;STK26	Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 26	yes	no	0	0	0	13	0													1				19.497	19.497	2	0.020982	14795	DP690-13	79.489	58.652			0.91131	1.123	NaN	1	0	Median	18514000	6434100	12080000	14646	2518	13683	28730	69456	69456		1	9606
TTAARPTFEPAR	0	2	Acetyl (Protein N-term)	1358.6943	0.69426293	2284	Q9P013	CWC15	Spliceosome-associated protein CWC15 homolog	yes	yes	1	0	1	14.5	0.5														1	1		13.644	13.644	2	0.00027242	7059	DP690-14	104.22	65.918			0.61719	0.69686	13.105	2	0	Median	75924000	42310000	33614000	14647	2284	13684	28731;28732	69457;69458;69459;69460;69461;69462	69458		6	9606
TTAEDGVPAPPLLDPIVQQFGQFSK	1	0	Unmodified	2654.3592	0.35918279	1997	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	10	0										1							24.255	24.255	2	8.9801E-07	22210	DP690-10	140.22	140.22			0.58363	0.70743	NaN	1	0	Median	8321500	4683700	3637800	14648	1997	13685	28733	69463;69464;69465;69466	69466		4	9606
TTAENEFVMLK	1	0	Oxidation (M)	1297.6224	0.62240312	43	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	1	0	16	0																1	15.828	15.828	2	0.01043	9650	DP690-16	103.55	50.83		+	NaN	NaN	NaN	0	0	Median	10079000	10079000	0	14649	43	13686	28734	69467;69468	69468	50	2	9606
TTAGSVDWTDQLGLR	0	1	Unmodified	1618.7951	0.79509919	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10.2	0.433										3	1						19.257	19.257	2	0.0016921	15588	DP690-11	106.67	54.5			0.81471	0.97418	NaN	1	0	Median	50381000	29596000	20785000	14650	2065	13687	28735;28736;28737;28738	69469;69470;69471;69472;69473	69472		5	9606
TTANAIYCPPK	1	0	Unmodified	1234.6016	0.6016081	72	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	5	0					1												12.926	12.926	2	0.0050124	5539	DP690-5	88.177	59.38			1.1597	1.163	NaN	1	0	Median	7373200	3484900	3888400	14651	72	13688	28739	69474;69475;69476	69474		3	9606
TTASEPVEQSEATSK	1	0	Unmodified	1563.7264	0.7264105	1308	Q15007	WTAP	Pre-mRNA-splicing regulator WTAP	yes	yes	0	0	0	13	0													1				10.527	10.527	2	2.4564E-05	2859	DP690-13	162.49	162.49			0.8485	0.98168	NaN	1	0	Median	16371000	8430600	7940100	14652	1308	13689	28740	69477	69477		1	9606
TTCALTLEAGEK	1	0	Unmodified	1292.6282	0.62821678	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								14.061	14.061	2	0.06483	7251	DP690-9	83.869	38.501			NaN	NaN	NaN	0	0	Median	0	0	0	14653	1762	13690	28741	69478	69478		1	9606
TTCMSSQGSDDEQIKR	1	1	Unmodified	1841.7884	0.7883756	2296	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	1	13	0													1				10.452	10.452	3	1.1656999999999999E-22	2723	DP690-13	249.33	232.58			0.91052	1.0085	NaN	1	0	Median	137800000	73139000	64658000	14654	2296	13691	28742	69479;69480;69481;69482	69479		4	9606
TTCTMLEEQVMDLEALNDELLEKER	1	1	2 Oxidation (M)	3041.3879	0.38791802	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	2	1	10	0										1							22.408	22.408	3	6.2185E-07	19993	DP690-10	133.65	102.81			0.83113	0.96472	NaN	1	0	Median	10894000	6306800	4586700	14655	106	13692	28743	69483;69484	69483	116;117	2	9606
TTDDTTTDNYIAQGK	1	0	Unmodified	1642.7322	0.73222416	1537	Q7Z2T5	TRMT1L	TRMT1-like protein	yes	yes	0	0	0	5.67	3.77			2								1						13.11	13.11	2	4.8782E-11	6583	DP690-11	212.89	192.06			0.75018	0.91494	NaN	1	0	Median	33914000	20956000	12958000	14656	1537	13693	28744;28745;28746	69485;69486;69487;69488;69489;69490;69491;69492	69486		8	9606
TTDLLTDWEK	1	0	Unmodified	1220.5925	0.5924832	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								18.879	18.879	2	9.1842E-05	13465	DP690-9	152.11	98.618			0.87457	1.0933	NaN	1	0	Median	21798000	11935000	9863300	14657	1264	13694	28747	69493;69494;69495;69496	69494		4	9606
TTDLSIQPPSADLK	1	0	Unmodified	1484.7722	0.77223848	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	0	9	0									1								16.612	16.612	2	0.0059453	10625	DP690-9	121.68	84.124			NaN	NaN	NaN	0	0	Median	0	0	0	14658	1602	13695	28748	69497	69497		1	9606
TTDMAPSKETEMALAK	2	0	2 Oxidation (M)	1754.8067	0.80665143	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	2	1	9.75	0.433									1	3							11.399	11.399	2;3	5.4665E-05	3780	DP690-10	117.08	93.125			0.87404	1.0572	39.554	4	0	Median	335160000	190480000	144680000	14659	604	13696	28749;28750;28751;28752	69498;69499;69500;69501;69502;69503;69504;69505;69506;69507;69508	69500	841;842	11	9606
TTDMAPSKETEMALAK	2	0	Oxidation (M)	1738.8117	0.81173681	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	1	10	0										2							12.395	12.395	2;3	2.1107E-07	5678	DP690-10	154.13	154.13			0.78767	0.94468	22.426	2	0	Median	228820000	145090000	83723000	14660	604	13696	28753;28754	69509;69510;69511;69512;69513;69514;69515;69516;69517	69511	841;842	9	9606
TTDMAPSKETEMALAK	2	0	Unmodified	1722.8168	0.81682219	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	10	0										1							13.627	13.627	2	1.1576E-21	7500	DP690-10	237.53	197.38			0.75057	0.93681	NaN	1	0	Median	36902000	20302000	16600000	14661	604	13696	28755	69518;69519	69518		2	9606
TTELQDELSHLR	0	1	Unmodified	1440.7209	0.72087161	2080	Q9H019	MTFR1L	Mitochondrial fission regulator 1-like	yes	yes	0	0	0	14	0														1			16.888	16.888	3	0.012665	11527	DP690-14	64.945	35.7			1.0013	1.2111	NaN	1	0	Median	51792000	29632000	22160000	14662	2080	13697	28756	69520	69520		1	9606
TTEMETIYDLGTK	1	0	Unmodified	1500.7018	0.70177565	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	13	0													1				18.504	18.504	2	0.00014413	13491	DP690-13	143.5	96.683			1.2197	1.4112	NaN	1	0	Median	49940000	26090000	23850000	14663	2427	13698	28757	69521	69521		1	9606
TTEMETIYDLGTK	1	0	Oxidation (M)	1516.6967	0.69669028	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	1	0	13	0													1				16.228	16.228	2	0.00032679	10408	DP690-13	141.89	93.795			NaN	NaN	NaN	0	0	Median	38767000	0	38767000	14664	2427	13698	28758	69522;69523	69522	2866	2	9606
TTENNYCPHYEK	1	0	Unmodified	1554.6409	0.64090673	1066	P98172	EFNB1	Ephrin-B1	yes	yes	0	0	0	16	0																1	10.623	10.623	3	0.00013346	3104	DP690-16	163.45	118.62			0.8178	0.92405	NaN	1	0	Median	50634000	29359000	21275000	14665	1066	13699	28759	69524;69525;69526	69524		3	9606
TTEPGVTGLLLAVEGPAAK	1	0	Unmodified	1823.004	0.0040293305	1286	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	10	0										1							21.578	21.578	2	8.4562E-14	18878	DP690-10	190.57	128.61			NaN	NaN	NaN	0	0	Median	23317000	23317000	0	14666	1286	13700	28760	69527;69528	69527		2	9606
TTETFVK	1	0	Acetyl (Protein N-term)	866.43855	0.43854874	1970	Q9BQ15	NABP2	SOSS complex subunit B1	yes	yes	1	0	0	15	0															1		15.615	15.615	1	0.0051565	9428	DP690-15	107.43	66.744			0.82206	0.96947	NaN	1	0	Median	17360000	9248700	8111000	14667	1970	13701	28761	69529	69529		0	9606
TTETGAQQEGIGGLCR	0	1	Unmodified	1676.7788	0.7787972	2079	Q9GZY6	LAT2	Linker for activation of T-cells family member 2	yes	yes	0	0	0	15	0															1		13.759	13.759	2	6.5232E-09	7060	DP690-15	186.74	138.14			0.91837	1.065	NaN	1	0	Median	18636000	10835000	7801400	14668	2079	13702	28762	69530;69531;69532;69533	69530		4	9606
TTFDEAMADLHTLSEDSYK	1	0	Oxidation (M)	2188.947	0.94704432	641	P31947	SFN	14-3-3 protein sigma	yes	yes	0	1	0	7	0							1										18.506	18.506	3	0.00032344	12785	DP690-7	92.39	76.078			1.0114	1.101	NaN	1	0	Median	18758000	9781600	8976600	14669	641	13703	28763	69534	69534	896	1	9606
TTFFHHEYPWILSASDDQTIR	0	1	Unmodified	2563.2132	0.21318726	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			1														18.59	18.59	4	0.019845	13402	DP690-3	46.982	25.584			1.7962	2.0449	NaN	1	0	Median	12166000	3823100	8342700	14670	878	13704	28764	69535	69535		1	9606
TTFLYLVNFNK	1	0	Unmodified	1358.7234	0.72343779	2345	Q9UHN6	TMEM2	Transmembrane protein 2	yes	yes	0	0	0	10	0										1							20.905	20.905	2	0.00054931	17965	DP690-10	111.95	78.757			0.73947	0.89936	NaN	1	0	Median	18662000	10147000	8514200	14671	2345	13705	28765	69536;69537;69538	69536		3	9606
TTFQENTQSISVR	0	1	Unmodified	1509.7423	0.74233534	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	9.5	0.5									1	1							14.334	14.334	2	1.7321E-09	8539	DP690-10	218.11	190.8			0.86663	1.0521	13.39	2	0	Median	262570000	145990000	116580000	14672	13	13706	28766;28767	69539;69540;69541;69542;69543;69544;69545;69546;69547	69542		9	9606
TTGFGMIYDSLDYAK	1	0	Oxidation (M)	1696.7654	0.76543854	994	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	0	16	0																1	19.567	19.567	2	3.3523E-05	14178	DP690-16	139.76	84.976			0.9616	1.1251	NaN	1	0	Median	17975000	9691100	8284400	14673	994	13707	28768	69548;69549;69550;69551	69549	1519	4	9606
TTGGICTYCNR	0	1	Unmodified	1301.5493	0.54925495	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	0	13	2											1				1		11.924	11.924	2	2.5271E-06	4885	DP690-11	211.45	189.45			0.85708	0.98722	6.9748	2	0	Median	202970000	110410000	92561000	14674	144	13708	28769;28770	69552;69553;69554;69555;69556;69557;69558;69559;69560	69553		9	9606
TTGIVETHFTFK	1	0	Unmodified	1379.7085	0.70851601	377;426	P08754;P63096;P09471;P04899	GNAI3;GNAI1;GNAO1;GNAI2	Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-2	no	no	0	0	0	14	0														2			15.547	15.547	2;3	1.0307E-07	9604	DP690-14	201.84	159.13			0.91567	1.0803	3.2713	2	0	Median	337140000	169230000	167900000	14675	426;377	13709	28771;28772	69561;69562;69563;69564;69565;69566;69567;69568	69565		8	9606
TTGIVMDSGDGVTHIVPIYEGYALPHAILR	0	1	Oxidation (M)	3210.6383	0.63833454	1408	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	1	0	14	0														1			26.29	26.29	3	0.076548	22991	DP690-14	54.3	35.984			NaN	NaN	NaN	0	0	Median	0	0	0	14676	1408	13710	28773	69569	69569		1	9606
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	0	1	Oxidation (M)	3198.6019	0.60194904	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	12.4	3.61	1		1			13	1		3	1	1		3	37	20	3	24.254	24.254	3;4	5.4574999999999996E-46	13796	DP690-14	218.78	187.74			0.71361	0.84537	19.77	62	0	Median	39914000000	21566000000	18348000000	14677	926;1023	13711	28774;28775;28776;28777;28778;28779;28780;28781;28782;28783;28784;28785;28786;28787;28788;28789;28790;28791;28792;28793;28794;28795;28796;28797;28798;28799;28800;28801;28802;28803;28804;28805;28806;28807;28808;28809;28810;28811;28812;28813;28814;28815;28816;28817;28818;28819;28820;28821;28822;28823;28824;28825;28826;28827;28828;28829;28830;28831;28832;28833;28834;28835;28836;28837;28838;28839;28840;28841;28842;28843;28844;28845;28846;28847;28848;28849;28850;28851;28852;28853;28854;28855;28856;28857	69570;69571;69572;69573;69574;69575;69576;69577;69578;69579;69580;69581;69582;69583;69584;69585;69586;69587;69588;69589;69590;69591;69592;69593;69594;69595;69596;69597;69598;69599;69600;69601;69602;69603;69604;69605;69606;69607;69608;69609;69610;69611;69612;69613;69614;69615;69616;69617;69618;69619;69620;69621;69622;69623;69624;69625;69626;69627;69628;69629;69630;69631;69632;69633;69634;69635;69636;69637;69638;69639;69640;69641;69642;69643;69644;69645;69646;69647;69648;69649;69650;69651;69652;69653;69654;69655;69656;69657;69658;69659;69660;69661;69662;69663;69664;69665;69666;69667;69668;69669;69670;69671;69672;69673;69674;69675;69676;69677;69678;69679;69680;69681;69682;69683;69684;69685;69686;69687;69688;69689;69690;69691;69692;69693;69694;69695;69696;69697;69698;69699;69700;69701;69702;69703;69704;69705;69706;69707;69708;69709;69710;69711;69712;69713;69714;69715;69716;69717;69718;69719;69720;69721;69722;69723;69724;69725;69726;69727;69728;69729;69730;69731;69732;69733;69734;69735;69736;69737;69738;69739;69740;69741;69742;69743;69744;69745;69746;69747;69748;69749;69750;69751;69752;69753;69754;69755;69756;69757;69758;69759;69760;69761;69762;69763;69764;69765;69766;69767;69768;69769;69770;69771;69772;69773;69774;69775;69776;69777;69778;69779;69780;69781;69782;69783;69784;69785	69586	1429	213	9606
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	0	1	Unmodified	3182.607	0.60703441	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	13.9	1.65						1			2	1	1			42	9	4	26.667	26.667	3;4	7.4309E-36	14688	DP690-14	211.81	195.41			0.73138	0.88722	13.496	39	0	Median	37870000000	21546000000	16324000000	14678	926;1023	13711	28858;28859;28860;28861;28862;28863;28864;28865;28866;28867;28868;28869;28870;28871;28872;28873;28874;28875;28876;28877;28878;28879;28880;28881;28882;28883;28884;28885;28886;28887;28888;28889;28890;28891;28892;28893;28894;28895;28896;28897;28898;28899;28900;28901;28902;28903;28904;28905;28906;28907;28908;28909;28910;28911;28912;28913;28914;28915;28916;28917	69786;69787;69788;69789;69790;69791;69792;69793;69794;69795;69796;69797;69798;69799;69800;69801;69802;69803;69804;69805;69806;69807;69808;69809;69810;69811;69812;69813;69814;69815;69816;69817;69818;69819;69820;69821;69822;69823;69824;69825;69826;69827;69828;69829;69830;69831;69832;69833;69834;69835;69836;69837;69838;69839;69840;69841;69842;69843;69844;69845;69846;69847;69848;69849;69850;69851;69852;69853;69854;69855;69856;69857;69858;69859;69860;69861;69862;69863;69864;69865;69866;69867;69868;69869;69870;69871;69872;69873;69874;69875;69876;69877;69878;69879;69880;69881;69882;69883;69884;69885;69886;69887;69888;69889;69890;69891;69892;69893;69894;69895;69896;69897;69898;69899;69900;69901;69902;69903;69904;69905;69906;69907;69908;69909;69910;69911;69912;69913;69914;69915;69916;69917;69918;69919;69920;69921;69922;69923;69924;69925;69926;69927;69928;69929;69930;69931;69932;69933;69934;69935;69936;69937;69938;69939;69940;69941;69942;69943;69944;69945;69946;69947;69948;69949;69950;69951;69952;69953;69954;69955;69956;69957;69958;69959	69798		172	9606
TTGMGAIYGMAQTTVDR	0	1	2 Oxidation (M)	1803.8131	0.81313379	326	O95470	SGPL1	Sphingosine-1-phosphate lyase 1	yes	yes	0	2	0	12	0												1					13.899	13.899	2	0.01218	7462	DP690-12	90.861	58.531			NaN	NaN	NaN	0	0	Median	3968500	0	3968500	14679	326	13712	28918	69960	69960	339;340	1	9606
TTHFVEGGDAGNREDQINR	0	2	Unmodified	2114.973	0.97295699	525	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	11.6	3.77							2							1	2		11.083	11.083	3;4	4.993E-05	3624	DP690-15	113.67	113.67			1.0119	1.0882	5.3386	5	0	Median	452510000	224790000	227720000	14680	525	13713	28919;28920;28921;28922;28923	69961;69962;69963;69964;69965;69966;69967;69968;69969;69970;69971;69972;69973;69974;69975;69976	69968		16	9606
TTICQVFAALANQK	1	0	Unmodified	1563.8079	0.80791248	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									2								22.141	22.141	2	0.014119	17342	DP690-9	107.21	71.297			NaN	NaN	NaN	0	0	Median	0	0	0	14681	2217	13714	28924;28925	69977;69978	69977		2	9606
TTIENIQLPHTLLSR	0	1	Unmodified	1734.9628	0.96283322	651	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	11	0											1						18.288	18.288	3	0.0013299	14214	DP690-11	81.703	81.703			0.78423	0.93229	NaN	1	0	Median	125330000	66725000	58606000	14682	651	13715	28926	69979;69980;69981	69979		3	9606
TTIHEMFLSTLDPK	1	0	Oxidation (M)	1647.8178	0.81780846	2453	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	1	0	13	0													1				16.543	16.543	3	0.058576	10896	DP690-13	47.606	37.795			0.62003	0.7204	NaN	1	0	Median	32855000	19081000	13773000	14683	2453	13716	28927	69982	69982		1	9606
TTIKDQEDLK	2	0	Unmodified	1189.619	0.6190323	1694	Q8NF91	SYNE1	Nesprin-1	yes	yes	0	0	1	2	0		1															13.724	13.724	2	0.06037	6176	DP690-2	75.738	6.892			0.82036	0.85163	NaN	1	0	Median	74647000	42856000	31791000	14684	1694	13717	28928	69983	69983		1	9606
TTIPEEEEEEEEAAGVVVEEELFHQQGTPR	0	1	Unmodified	3410.5638	0.56376843	544	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	10.5	1.5									1			1					22.086	22.086	3	1.0546E-12	18484	DP690-12	154.17	144.06			0.62092	0.73771	NaN	1	0	Median	60346000	33953000	26393000	14685	544	13718	28929;28930	69984;69985;69986;69987;69988	69984		5	9606
TTISVAHLLAAR	0	1	Unmodified	1251.7299	0.72992016	1680	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	0	12.5	0.5												1	1				16.651	16.651	3	3.3221E-05	11273	DP690-12	132.25	132.25			0.96506	1.1503	10.68	2	0	Median	151010000	75594000	75416000	14686	1680	13719	28931;28932	69989;69990;69991;69992	69990		4	9606
TTITMAHLLAAR	0	1	Unmodified	1297.7176	0.71764091	1398	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	13	0													1				16.357	16.357	3	0.0019721	10561	DP690-13	98.898	80.762			0.76863	0.91282	NaN	1	0	Median	110040000	60025000	50014000	14687	1398	13720	28933	69993;69994	69993		2	9606
TTIYEIQDDR	0	1	Unmodified	1252.5935	0.59354583	1367	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	11	0											1						14.945	14.945	2	0.070865	9299	DP690-11	82.749	53.276			NaN	NaN	NaN	0	0	Median	0	0	0	14688	1367	13721	28934	69995	69995		1	9606
TTLCGTLDYLPPEMIEGR	0	1	Oxidation (M)	2080.9809	0.9809274	124	O14965	AURKA	Aurora kinase A	yes	yes	0	1	0	13	0													1				19.09	19.09	2	0.045767	14453	DP690-13	82.515	48.466			NaN	NaN	NaN	0	0	Median	8328900	8328900	0	14689	124	13722	28935	69996	69996		1	9606
TTLEVLQLFPINIK	1	0	Unmodified	1627.9549	0.95489429	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	2	0		1															23.895	23.895	2	0.086525	17524	DP690-2	53.597	46.937			1.229	1.2053	NaN	1	0	Median	666210	255650	410560	14690	1437	13723	28936	69997	69997		1	9606
TTLLPGLLK	1	0	Unmodified	954.61137	0.61136815	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	8.75	2.95				1					1	1		1					18.797	18.797	2	0.00089084	13231	DP690-4	127.12	91.238			0.87983	0.95743	19.842	4	0	Median	1890399999.9999998	1007499999.9999999	882820000	14691	2210	13724	28937;28938;28939;28940	69998;69999;70000;70001;70002;70003;70004;70005;70006;70007;70008;70009;70010;70011;70012	70007		15	9606
TTLSASGTGFGDK	1	0	Unmodified	1240.5935	0.59354583	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	10	0										1							13.585	13.585	2	0.00038132	7411	DP690-10	110.54	110.54			0.94725	1.1689	NaN	1	0	Median	105470000	54237000	51229000	14692	807	13725	28941	70013;70014	70013		2	9606
TTMPLEMPEKDNTFVLK	2	0	Oxidation (M)	2008.985	0.98495015	102	O14492	SH2B2	SH2B adapter protein 2	yes	yes	0	1	1	7	0							1										16.393	16.393	2	0.036741	10038	DP690-7	101.3	33.163			NaN	NaN	NaN	0	0	Median	14784000	14784000	0	14693	102	13726	28942	70015	70015	112	1	9606
TTMRPQSFYDGSHSCAR	0	2	Oxidation (M)	2015.8578	0.85779257	1181	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	1	1	6.5	0.5						1	1										10.534	10.534	4	4.4964E-05	2967	DP690-7	120.32	109.63			1.0031	1.0537	28.828	2	0	Median	66125000	34052000	32073000	14694	1181	13727	28943;28944	70016;70017;70018;70019;70020	70018	1832	5	9606
TTMRPQSFYDGSHSCAR	0	2	Unmodified	1999.8629	0.86287795	1181	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	1	7	0							1										12.027	12.027	4	0.015121	4673	DP690-7	65.949	49.811			0.75456	0.77415	NaN	1	0	Median	25540000	14073000	11467000	14695	1181	13727	28945	70021	70021		1	9606
TTNFAGILSQGLR	0	1	Unmodified	1376.7412	0.74121312	439	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	11	0											1						19.813	19.813	2	0.00035326	16239	DP690-11	111.86	77.323			0.86286	1.0198	NaN	1	0	Median	135170000	69271000	65898000	14696	439	13728	28946	70022	70022		1	9606
TTNNIPLLQQILLTLQHLPLTVDHLK	1	0	Unmodified	2975.7172	0.71717721	1914	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	11	0											1						26.08	26.08	4	0.037717	24157	DP690-11	49.765	43.332			NaN	NaN	NaN	0	0	Median	83801000	83801000	0	14697	1914	13729	28947	70023	70023		1	9606
TTNSSWVVVFK	1	0	Unmodified	1266.6608	0.66083754	1214	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	12	0												1					18.722	18.722	2	0.00023166	14118	DP690-12	122.13	90.605			0.83418	0.99396	NaN	1	0	Median	47256000	25445000	21811000	14698	1214	13730	28948	70024;70025	70024		2	9606
TTPDVIFVFGFR	0	1	Unmodified	1397.7343	0.73433683	994	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	16	0																1	22.835	22.835	2	0.0016474	17757	DP690-16	98.582	51.763			0.89732	1.0489	NaN	1	0	Median	6603800	3500700	3103100	14699	994	13731	28949	70026;70027;70028;70029	70028		4	9606
TTPNKTPPGADPK	2	0	Acetyl (Protein N-term)	1364.6936	0.69359423	2400	Q9UM13	ANAPC10	Anaphase-promoting complex subunit 10	yes	yes	1	0	1	15	0															2		10.408	10.408	2	2.9745E-05	2739	DP690-15	140.45	83.406			0.58439	0.66644	13.943	2	0	Median	29176000	17540000	11636000	14700	2400	13732	28950;28951	70030;70031;70032;70033;70034	70031		5	9606
TTPSVVAFTADGER	0	1	Unmodified	1449.71	0.70997257	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	11.5	0.5											1	1					16.264	16.264	2	0.00020393	11154	DP690-11	117.14	96.358			0.54016	0.6377	3.0243	2	0	Median	218520000	134120000	84399000	14701	695	13733	28952;28953	70035;70036;70037;70038;70039;70040;70041	70035		7	9606
TTPSYVAFTDTER	0	1	Unmodified	1486.694	0.69398816	463;449;508	P11142;P54652;P17066;P48741;P0DMV9;P0DMV8	HSPA8;HSPA2;HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	9.4	4.78			1	2		1		1			1	1			2	1	16.149	16.149	2	1.8402E-05	10543	DP690-12	181.53	164.5			1.3584	1.5719	35.83	8	0	Median	2160500000	981720000	1178800000	14702	463;508;449	13734	28954;28955;28956;28957;28958;28959;28960;28961;28962;28963	70042;70043;70044;70045;70046;70047;70048;70049;70050;70051;70052;70053;70054;70055;70056;70057;70058;70059;70060;70061;70062;70063;70064;70065;70066;70067;70068;70069	70047		28	9606
TTQQDLSALQK	1	0	Unmodified	1231.6408	0.64083038	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									2								13.411	13.411	2	0.0012188	6383	DP690-9	104.79	104.79			1.0499	1.3164	NaN	1	0	Median	24541000	13814000	10728000	14703	2411	13735	28964;28965	70070;70071	70070		2	9606
TTQVPQFILDDFIQNDR	0	1	Unmodified	2049.0167	0.016719282	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	7.4	3.61			2							2	1						22.759	22.759	2	1.3088E-22	20257	DP690-10	232.13	232.13			0.75243	0.93608	20.879	3	0	Median	122560000	70366000	52197000	14704	1137	13736	28966;28967;28968;28969;28970	70072;70073;70074;70075;70076;70077;70078;70079;70080;70081;70082;70083;70084;70085;70086;70087	70074		16	9606
TTQVTQFILDNYIER	0	1	Unmodified	1839.9367	0.93667805	2105	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	11	0											1						21.266	21.266	2	7.1181E-16	18306	DP690-11	260.28	222.29			0.91595	1.0962	NaN	1	0	Median	52936000	26671000	26265000	14705	2105	13737	28971	70088;70089;70090;70091	70088		4	9606
TTSFAESCKPVQQPSAFGSMK	2	0	Oxidation (M)	2303.0562	0.05621761	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	1	1	13	0													1				13.669	13.669	3	0.00033999	6898	DP690-13	90.765	75			0.66095	0.73343	NaN	1	0	Median	135880000	86009000	49873000	14706	811	13738	28972	70092;70093;70094;70095;70096	70096	1220	5	9606
TTSFAESCKPVQQPSAFGSMK	2	0	Unmodified	2287.0613	0.061302988	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	1	13	0													1				14.761	14.761	3	0.00054904	8326	DP690-13	85.177	70.978			0.71913	0.80862	NaN	1	0	Median	53398000	32935000	20463000	14707	811	13738	28973	70097	70097		1	9606
TTSGALFPSLVPGSR	0	1	Acetyl (Protein N-term)	1530.8042	0.80420731	1352	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	1	0	0	13	0													2				22.775	22.775	2	0.00027285	18797	DP690-13	144.1	96.165			1.0712	1.3139	NaN	1	0	Median	13561000	7785400	5775900	14708	1352	13739	28974;28975	70098;70099;70100;70101	70098		4	9606
TTSGDDACNLTSFRPATLTVTNFFK	1	1	Unmodified	2763.3174	0.31739433	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	1	10	0										1							21.012	21.012	3	0.065866	18217	DP690-10	34.685	21.883			0.91462	1.1343	NaN	1	0	Median	33452000	15213000	18239000	14709	1901	13740	28976	70102	70102		1	9606
TTSILCLAR	0	1	Unmodified	1033.559	0.559015	663	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	14	0														1			16.705	16.705	2	0.0010611	11204	DP690-14	125.25	77.509			0.86754	1.0245	NaN	1	0	Median	131780000	69928000	61854000	14710	663	13741	28977	70103;70104;70105;70106	70104		4	9606
TTSPPEVSGYSYEK	1	0	Unmodified	1543.7042	0.70421849	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	10	0										1							14.025	14.025	2	0.00013526	8149	DP690-10	120.86	88.125			0.77349	0.95563	NaN	1	0	Median	77743000	39195000	38549000	14711	763	13742	28978	70107	70107		1	9606
TTSSANNPNLMYQDECDR	0	1	Oxidation (M)	2130.8582	0.85824608	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	1	0	11.5	0.5											1	1					12.895	12.895	2	1.0168E-12	6392	DP690-11	183.06	160.18			0.78134	0.93646	17.899	2	0	Median	76817000	40793000	36024000	14712	1793	13743	28979;28980	70108;70109;70110;70111;70112;70113;70114;70115;70116;70117	70113	2362	10	9606
TTSSANNPNLMYQDECDR	0	1	Unmodified	2114.8633	0.86333146	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11.5	0.5											1	1					14.103	14.103	2	1.0051000000000001E-29	8083	DP690-11	263.72	234.91			0.72809	0.87747	1.9115	2	0	Median	99370000	61776000	37594000	14713	1793	13743	28981;28982	70118;70119;70120;70121;70122;70123;70124;70125	70121		8	9606
TTSSANNPNLMYQDECDRR	0	2	Oxidation (M)	2286.9594	0.95935711	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	1	1	12.7	1.7											1	1			1		11.694	11.694	3	2.3561E-05	4549	DP690-11	119.54	119.54			0.74467	0.91081	6.5039	3	0	Plateau	267690000	149330000	118360000	14714	1793	13744	28983;28984;28985	70126;70127;70128;70129;70130;70131;70132;70133;70134;70135;70136;70137	70130	2362	12	9606
TTSSANNPNLMYQDECDRR	0	2	Unmodified	2270.9644	0.96444249	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	1	11.5	0.5											1	1					12.84	12.84	3	2.2191E-10	6150	DP690-11	155.56	149.07			0.73674	0.87101	4.7118	2	0	Median	378840000	213000000	165840000	14715	1793	13744	28986;28987	70138;70139;70140;70141;70142;70143;70144	70141		7	9606
TTSVSLTIGSSSPK	1	0	Unmodified	1363.7195	0.71947463	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	10.7	0.471										1	2						14.576	14.576	2	2.5339E-05	8750	DP690-11	148.28	115.87			0.81371	0.9662	5.357	2	0	Median	418140000	272570000	145560000	14716	1758	13745	28988;28989;28990	70145;70146;70147;70148;70149;70150	70148		6	9606
TTTAAAVASTGPSSR	0	1	Unmodified	1376.6896	0.68957148	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	9.78	4.21		1	1						1	1	1	1	1	2			10.814	10.814	2	4.9569E-16	3458	DP690-10	262.07	191.67			0.72241	0.84567	10.166	7	0	Median	1915299999.9999998	1067299999.9999999	847970000	14717	604	13746	28991;28992;28993;28994;28995;28996;28997;28998;28999	70151;70152;70153;70154;70155;70156;70157;70158;70159;70160;70161;70162;70163;70164;70165;70166;70167;70168;70169;70170;70171;70172;70173;70174;70175;70176;70177;70178;70179;70180;70181;70182;70183;70184;70185;70186	70154		36	9606
TTTLSGTAPAAGVVPSR	0	1	Unmodified	1584.8471	0.84713476	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	9.25	4.18		1	1						1	1	1	1	1	1			14.481	14.481	2	1.0646E-17	8643	DP690-10	218.06	146.61			0.64622	0.73414	20.21	8	0	Median	1419500000	828740000	590800000	14718	604	13747	29000;29001;29002;29003;29004;29005;29006;29007	70187;70188;70189;70190;70191;70192;70193;70194;70195;70196;70197;70198;70199;70200;70201;70202;70203;70204;70205;70206;70207;70208;70209;70210	70189		24	9606
TTTPGPSLSQGVSVDEK	1	0	Unmodified	1701.8421	0.84210896	231	O60934	NBN	Nibrin	yes	yes	0	0	0	11	0											2						14.555	14.555	2	0.00058672	8807	DP690-11	101.75	76.515			0.6543	0.79368	NaN	1	0	Median	41088000	22041000	19048000	14719	231	13748	29008;29009	70211;70212;70213	70212		3	9606
TTTPVYVALGIFVQHR	0	1	Unmodified	1800.9887	0.98865404	887	P54619	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1	yes	yes	0	0	0	14	0														1			21.396	21.396	3	2.6045E-06	17412	DP690-14	127.79	107.04			0.59455	0.73491	NaN	1	0	Median	11247000	6897900	4349500	14720	887	13749	29010	70214;70215	70214		2	9606
TTTTNTQVEGDDEAAFLER	0	1	Unmodified	2096.9498	0.94982151	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	10.2	1.3									2		1	1					16.773	16.773	2	2.1638E-70	11879	DP690-11	353.91	322.43			0.92738	1.0665	16.5	2	0	Median	332310000	182110000	150200000	14721	1119	13750	29011;29012;29013;29014	70216;70217;70218;70219;70220;70221;70222;70223;70224;70225;70226;70227	70216		12	9606
TTTVNIGSISTADGSALVK	1	0	Unmodified	1833.9684	0.96837211	1822	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	14	0														2			17.908	17.908	2	6.4175E-11	12842	DP690-14	192.18	102.07			NaN	NaN	NaN	0	0	Median	0	0	0	14722	1822	13751	29015;29016	70228;70229	70228		2	9606
TTVQQEPLESGAK	1	0	Unmodified	1386.6991	0.69907354	801	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	10	0										1							11.719	11.719	2	0.00010281	4660	DP690-10	160.77	135.64			0.72813	0.90023	NaN	1	0	Median	72701000	44730000	27971000	14723	801	13752	29017	70230;70231;70232	70231		3	9606
TTWGDGGENSPCNVVSK	1	0	Unmodified	1806.7843	0.7842765	66	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	15	0															3		14.476	14.476	2	0.0035841	8007	DP690-15	111.72	69.088			NaN	NaN	NaN	0	0	Median	3902800	0	3902800	14724	66	13753	29018;29019;29020	70233;70234;70235	70233		3	9606
TTYDQMYNDLLR	0	1	Oxidation (M)	1547.6926	0.69260795	2176	Q9NP77	SSU72	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	yes	yes	0	1	0	15	0															1		16.955	16.955	2	0.013695	11417	DP690-15	77.288	14.825			0.83649	0.96672	NaN	1	0	Median	11920000	6144900	5774900	14725	2176	13754	29021	70236;70237	70236	2661	2	9606
TTYDSSLSSYTVPLEK	1	0	Unmodified	1789.8622	0.8621757	1755	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	11	0											1						17.917	17.917	2	0.011541	13586	DP690-11	117.95	55.782			NaN	NaN	NaN	0	0	Median	0	0	0	14726	1755	13755	29022	70238	70238		1	9606
TTYGGAAAAVR	0	1	Unmodified	1036.5302	0.53015772	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	10	0										1							11.602	11.602	2	0.051059	4530	DP690-10	61.679	35.077			0.83805	1.0426	NaN	1	0	Median	81029000	45673000	35355000	14727	807	13756	29023	70239	70239		1	9606
TTYLEFIQQNEER	0	1	Acetyl (Protein N-term)	1711.8053	0.80532952	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	1	0	0	7	4			1								1						23.013	23.013	2	1.9158E-08	20592	DP690-11	208.84	180.64			0.97254	1.137	46.523	2	0	Median	12425000	5632500	6792700	14728	1332	13757	29024;29025	70240;70241;70242;70243;70244;70245;70246;70247	70243		8	9606
TTYLEFIQQNEERDGVR	0	2	Acetyl (Protein N-term)	2139.0233	0.023261223	1332	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	1	0	1	7	4			1								1						21.203	21.203	2	1.0099E-09	18292	DP690-11	182.08	154.67			0.94881	1.1696	NaN	1	0	Median	69725000	34465000	35260000	14729	1332	13758	29026;29027	70248;70249;70250;70251;70252;70253	70250		6	9606
TTYLVLDEADR	0	1	Unmodified	1294.6405	0.64049603	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	9.5	3.5				1					1			1	1				17.056	17.056	2	2.6378E-05	11987	DP690-12	187.5	161.46			0.86836	0.87687	13.267	3	0	Median	1885199999.9999998	1032499999.9999999	852680000	14730	517	13759	29028;29029;29030;29031	70254;70255;70256;70257;70258;70259;70260;70261;70262;70263;70264	70258		11	9606
TTYLVLDEADRMLDMGFEPQIR	0	2	2 Oxidation (M)	2644.2513	0.2512886	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	2	1	12	0												1					20.138	20.138	3	0.00034862	16114	DP690-12	85.496	66.724			0.727	0.8243	NaN	1	0	Median	26206000	15439000	10767000	14731	517	13760	29032	70265;70266;70267;70268;70269	70268	656;657	5	9606
TTYQALPCLPSMYGYPNR	0	1	Oxidation (M)	2146.9816	0.9815961	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	1	0	3	0			1														18.36	18.36	2	0.00056495	13063	DP690-3	107.17	91.732			1.8226	2.0615	NaN	1	0	Median	9933200	4044600	5888600	14732	878	13761	29033	70270;70271;70272;70273	70272	1335	4	9606
TVAEVQETLAEMIR	0	1	Unmodified	1588.8131	0.81305744	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0										1							21.806	21.806	2	7.9517E-05	19260	DP690-10	166.11	102.68			0.89289	1.1184	NaN	1	0	Median	43275000	22021000	21254000	14733	1724	13762	29034	70274;70275;70276	70274		3	9606
TVALDGTLFQK	1	0	Unmodified	1191.6499	0.6499385	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							17.721	17.721	2	0.00015914	13412	DP690-10	140.83	115.21			0.90618	1.0881	NaN	1	0	Median	217320000	133080000	84235000	14734	1285	13763	29035	70277;70278	70277		2	9606
TVAPMPPAQDHK	1	0	Oxidation (M)	1306.634	0.63397086	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	1	0	3	0			1														10.287	10.287	3	0.00074066	2471	DP690-3	97.163	97.163			0.66027	0.6877	NaN	1	0	Median	65089000	39915000	25174000	14735	559	13764	29036	70279;70280;70281	70279	728	3	9606
TVAPMPPAQDHKR	1	1	Unmodified	1446.7402	0.74016727	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	3	0			1														10.243	10.243	3	0.00047571	2414	DP690-3	95.273	52.297			0.64399	0.71423	NaN	1	0	Median	9273500	5308200	3965300	14736	559	13765	29037	70282;70283	70282		2	9606
TVAQSQQLETNSQR	0	1	Unmodified	1588.7805	0.78051176	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	8.67	3.77						2								1			10.678	10.678	2	6.8352E-35	3117	DP690-6	240	171.99			0.90414	1.0404	NaN	1	0	Median	226120000	117830000	108290000	14737	712	13766	29038;29039;29040	70284;70285;70286;70287;70288;70289;70290;70291;70292;70293	70289		10	9606
TVASTAMNSQSSR	0	1	Unmodified	1338.6198	0.61977736	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	0	10	0										1							10.689	10.689	2	3.7776E-09	3236	DP690-10	222.18	191.39			0.81556	0.95432	NaN	1	0	Median	278660000	153900000	124760000	14738	311	13767	29041	70294;70295;70296	70294		3	9606
TVDFTQDSNYLLTGGQDK	1	0	Unmodified	2000.9327	0.93271488	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	14	0														1			19.247	19.247	2	6.125899999999999E-50	14618	DP690-14	321.78	278.28			0.99839	1.1853	NaN	1	0	Median	141970000	74321000	67654000	14739	2474	13768	29042	70297;70298;70299;70300	70298		4	9606
TVDGMQQEGTPYTGILYAGIMLTK	1	0	2 Oxidation (M)	2618.2608	0.26079066	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	2	0	3	0			1														21.684	21.684	2	0.00076914	17211	DP690-3	106.28	95.641			1.1078	1.1621	NaN	1	0	Median	5114600	2500800	2613800	14740	559	13769	29043	70301;70302;70303;70304;70305;70306	70304	729;730	6	9606
TVDLQDAEEAVELVQYAYFK	1	0	Unmodified	2330.1318	0.13180862	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	10	1									1		1						25.645	25.645	2	8.0424E-72	23516	DP690-11	366.6	366.6			0.82097	0.99238	NaN	1	0	Median	46931000	24689000	22242000	14741	581	13770	29044;29045	70307;70308;70309;70310;70311;70312;70313	70311		7	9606
TVDLQDAEEAVELVQYAYFKK	2	0	Unmodified	2458.2268	0.22677164	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	11	0											1						23.703	23.703	3	0.00016469	21486	DP690-11	98.175	76.178			0.87524	1.0599	NaN	1	0	Median	21344000	11050000	10294000	14742	581	13771	29046	70314	70314		1	9606
TVDLSSHLAK	1	0	Unmodified	1069.5768	0.57677356	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												1					12.23	12.23	2	0.00063119	5019	DP690-12	114.89	63.828			0.84984	0.95414	NaN	1	0	Median	181400000	95207000	86195000	14743	375	13772	29047	70315;70316;70317;70318;70319;70320	70316		6	9606
TVDNFVALATGEK	1	0	Unmodified	1363.6983	0.69834526	568	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	15	0															1		18.79	18.79	2	0.0059996	13705	DP690-15	96.64	69.967			0.94742	1.117	NaN	1	0	Median	13275000	6835000	6440100	14744	568	13773	29048	70321;70322;70323;70324	70321		4	9606
TVDTDSHAEQGPAQQPQAQVEDADAFEHIK	1	0	Unmodified	3261.481	0.48104186	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								15.171	15.171	4	8.9291E-06	8692	DP690-9	96.515	88.052			0.81106	1.0351	NaN	1	0	Median	16106000	9362500	6744000	14745	2217	13774	29049	70325;70326;70327;70328;70329;70330	70329		6	9606
TVECEEGSEDDESLR	0	1	Unmodified	1753.6949	0.69485237	2370	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	11	0											1						12.77	12.77	2	0.022377	6100	DP690-11	103.88	84.424			NaN	NaN	NaN	0	0	Median	0	0	0	14746	2370	13775	29050	70331	70331		1	9606
TVEEIEACMAGCDK	1	0	Oxidation (M)	1627.6528	0.65279333	478	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	1	0	4	0				1													13.111	13.111	2	5.8157E-05	5982	DP690-4	145.14	136.9			0.78496	0.84807	NaN	1	0	Median	7921000	4214600	3706400	14747	478	13776	29051	70332;70333;70334;70335	70334	586	4	9606
TVEEKDLEIER	1	1	Unmodified	1359.6882	0.6881745	1296	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	0	1	12	0												1					13.067	13.067	3	0.0070614	6242	DP690-12	103.91	59.296			NaN	NaN	NaN	0	0	Median	29128000	0	29128000	14748	1296	13777	29052	70336	70336		1	9606
TVEELLETGLIQVATK	1	0	Unmodified	1742.9666	0.96658119	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	10	0										1							23.27	23.27	2	0.0070108	21022	DP690-10	125.54	125.54			0.9308	1.1284	NaN	1	0	Median	11495000	5646600	5848800	14749	1570	13778	29053	70337	70337		0	9606
TVEELLETGLIQVATKEEELNAIR	1	1	Unmodified	2697.4436	0.4436407	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	1	10	0										1							24.65	24.65	3	0.00025424	22683	DP690-10	96.55	75.872			NaN	NaN	NaN	0	0	Median	0	0	0	14750	1570	13779	29054	70338	70338		1	9606
TVEFLQEYIVNR	0	1	Unmodified	1509.7827	0.78274359	192	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	11	0											1						19.955	19.955	2	0.0043821	16585	DP690-11	121.5	36.212			NaN	NaN	NaN	0	0	Median	12171000	0	12171000	14751	192	13780	29055	70339	70339		1	9606
TVEGATQHQELLETCPPTALHGALDALTQLGNCAWR	0	1	Unmodified	3957.9102	0.91016908	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	11	0											1						22.189	22.189	4	0.047182	19603	DP690-11	30.594	30.594			NaN	NaN	NaN	0	0	Median	11279000	5694300	5584300	14752	83	13781	29056	70340	70340		1	9606
TVEIPDPVEAGEEVK	1	0	Unmodified	1610.8039	0.80393254	556	P21980	TGM2	Protein-glutamine gamma-glutamyltransferase 2	yes	yes	0	0	0	3	0			1														17.637	17.637	2	0.00095276	12112	DP690-3	98.803	80.535			1.2166	1.2897	NaN	1	0	Median	10547000	4392500	6154600	14753	556	13782	29057	70341;70342;70343;70344	70344		4	9606
TVEIVHIDIADR	0	1	Unmodified	1379.7409	0.74087877	784	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	6	0						1											16.596	16.596	3	0.00462	10060	DP690-6	76.326	58.66			0.89242	1.024	NaN	1	0	Median	8678800	4565900	4112900	14754	784	13783	29058	70345;70346	70345		2	9606
TVELLSGVVDQTK	1	0	Unmodified	1387.7559	0.75586013	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	12	0												1					17.962	17.962	2	1.2702E-10	13091	DP690-12	228.98	205.84			0.85199	0.92916	NaN	1	0	Median	283950000	156320000	127630000	14755	2359	13784	29059	70347;70348;70349;70350;70351;70352	70348		6	9606
TVELSIPADPANLDSEAK	1	0	Unmodified	1868.9367	0.93673763	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															18.732	18.732	2	3.4689E-06	12041	DP690-2	132.31	109.75			0.87075	0.87338	NaN	1	0	Median	5156400	2974700	2181700	14756	1179	13785	29060	70353;70354;70355;70356	70354		4	9606
TVEMAVTTEAIGNLGR	0	1	Oxidation (M)	1676.8403	0.84033482	2553				yes	yes	0	1	0	10	0										1							14.075	14.075	2	0.067161	8047	DP690-10	77.674	19.163	+		NaN	NaN	NaN	0	0	Median	54899000	0	54899000	14757	2553	13786	29061	70357	70357		1	9606
TVENIKDPLFR	1	1	Unmodified	1330.7245	0.72450043	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	7.5	3.2		1							2	1							15.251	15.251	2;3	5.8477E-05	8795	DP690-9	138.76	85.195			0.86114	0.96854	9.6476	4	0	Median	108060000	56810000	51246000	14758	1264	13787	29062;29063;29064;29065	70358;70359;70360;70361;70362;70363;70364;70365	70362		8	9606
TVETRDGQVINETSQHHDDLE	0	1	Unmodified	2422.0997	0.099673643	424	P08670	VIM	Vimentin	yes	yes	0	0	1	13	0													3				12.73	12.73	3;4	5.0511E-15	5745	DP690-13	164.94	164.94			0.94217	1.1069	18.39	3	0	Plateau	176450000	93745000	82706000	14759	424	13788	29066;29067;29068	70366;70367;70368;70369;70370;70371;70372;70373;70374;70375;70376;70377;70378	70375		13	9606
TVEVLEPEVTK	1	0	Unmodified	1242.6707	0.67073352	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	7	4			1								1						15.177	15.177	2	0.00010141	8806	DP690-3	132.01	76.64			0.82411	0.92984	13.042	2	0	Median	129600000	70977000	58620000	14760	1531;1849	13789	29069;29070	70379;70380;70381;70382;70383;70384;70385;70386	70384		8	9606
TVFAEHISDECK	1	0	Unmodified	1434.6449	0.64492948	698	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	9.57	3.33					2				2				3				12.995	12.995	2;3	0.00021062	5934	DP690-13	147.62	107.69			0.88583	1.0114	23.164	4	0	Median	230310000	100010000	130310000	14761	698	13790	29071;29072;29073;29074;29075;29076;29077	70387;70388;70389;70390;70391;70392;70393;70394;70395;70396;70397;70398	70387		12	9606
TVFAEHISDECKR	1	1	Unmodified	1590.746	0.7460405	698	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	13	0													2				11.761	11.761	3;4	9.9501E-05	4380	DP690-13	112.02	70.641			2.8042	3.3486	157.37	2	0	Median	93755000	36794000	56961000	14762	698	13791	29078;29079	70399;70400	70399		1	9606
TVFDEAIIAILTPK	1	0	Unmodified	1529.8705	0.87049596	509	P17081	RHOQ	Rho-related GTP-binding protein RhoQ	yes	yes	0	0	0	16	0																2	25.543	25.543	2	0.0032663	19985	DP690-16	142.1	102.55			NaN	NaN	NaN	0	0	Median	0	0	0	14763	509	13792	29080;29081	70401;70402	70402		2	9606
TVFDEAIR	0	1	Unmodified	949.4869	0.48689592	1012	P63000;P60763;P15153	RAC1;RAC3;RAC2	Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3;Ras-related C3 botulinum toxin substrate 2	yes	no	0	0	0	8	0								1									15.693	15.693	2	0.044873	8850	DP690-8	98.997	25.958			NaN	NaN	NaN	0	0	Median	4112500	0	4112500	14764	1012	13793	29082	70403	70403		1	9606
TVFFESLER	0	1	Unmodified	1126.5659	0.56587452	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														18.284	18.284	2	0.00052483	12895	DP690-3	149.65	70.537			0.90973	0.98648	NaN	1	0	Median	65179000	34104000	31075000	14765	5	13794	29083	70404;70405;70406;70407	70404		4	9606
TVFQFDVQR	0	1	Unmodified	1138.5771	0.57710791	194	O43847	NRD1	Nardilysin	yes	yes	0	0	0	3	0			1														17.24	17.24	2	0.019994	11657	DP690-3	79.474	20.878			0.76673	0.88425	NaN	1	0	Median	18828000	10154000	8674000	14766	194	13795	29084	70408;70409	70408		2	9606
TVFRPPLDIYDVLIR	0	2	Unmodified	1816.0247	0.024705193	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	1	11	0											1						21.76	21.76	3	3.2566E-05	18921	DP690-11	123.72	90.723			0.83256	1.0263	NaN	1	0	Median	112270000	61638000	50635000	14767	2127	13796	29085	70410;70411;70412;70413	70413		4	9606
TVGALQVLGTEAQSSLLK	1	0	Unmodified	1814.0149	0.014928368	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	8	3.54		1							1	1	1						20.827	20.827	2	2.1572000000000002E-70	15836	DP690-9	360.04	337.55			0.88835	0.99834	8.2796	4	0	Median	735400000	390180000	345220000	14768	1046	13797	29086;29087;29088;29089	70414;70415;70416;70417;70418;70419;70420;70421;70422;70423;70424;70425;70426;70427;70428;70429;70430;70431	70431		17	9606
TVGATALPR	0	1	Unmodified	884.50797	0.50796571	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	4	0				1													12.128	12.128	2	0.003138	4799	DP690-4	107.29	48.513			1.4298	1.5778	NaN	1	0	Median	45032000	18832000	26200000	14769	826	13798	29090	70432	70432		1	9606
TVGLFLQGGK	1	0	Unmodified	1018.5811	0.58113065	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	12	0												1					16.723	16.723	2	0.010989	11446	DP690-12	82.279	58.756			0.95948	1.1429	NaN	1	0	Median	43219000	18622000	24597000	14770	737	13799	29091	70433;70434	70434		2	9606
TVGMLSNMIAFYDMAR	0	1	3 Oxidation (M)	1866.8314	0.83142639	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	3	0	4	0				2													18.162	18.162	2	0.0035017	12590	DP690-4	104.17	72.947			NaN	NaN	NaN	0	0	Median	1428200	0	1428200	14771	694	13800	29092;29093	70435;70436;70437	70437	1005;1006;1007	3	9606
TVGTPIASVPGSTNTGTVPGSEKDSDSMETEEK	2	0	Oxidation (M)	3323.5199	0.51985471	1935	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	1	1	3	0			2														14.414	14.414	3	3.2575E-06	7925	DP690-3	74.058	55.846			1.1511	1.255	NaN	1	0	Median	8825100	4492200	4332900	14772	1935	13801	29094;29095	70438;70439;70440	70439	2468	3	9606
TVHAGEVGSAEVVK	1	0	Unmodified	1381.7201	0.72014333	357	P00813	ADA	Adenosine deaminase	yes	yes	0	0	0	6	0						2											11.012	11.012	2;3	5.5975E-06	3467	DP690-6	149.69	126.18			0.79726	0.88928	0.30796	2	0	Median	43522000	23765000	19757000	14773	357	13802	29096;29097	70441;70442;70443;70444;70445;70446;70447;70448	70443		8	9606
TVHSLACLLTQYR	0	1	Unmodified	1560.8082	0.80824683	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															18.048	18.048	3	1.525E-08	11324	DP690-2	155.88	130.17			1.4835	1.5481	NaN	1	0	Median	17517000	6257100	11259000	14774	602	13803	29098	70449;70450;70451;70452	70449		4	9606
TVIDYNGER	0	1	Unmodified	1065.5091	0.50908792	402	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	4	0				1													12.861	12.861	2	0.00069477	5728	DP690-4	140.35	92.696			1.0644	1.2168	NaN	1	0	Median	22031000	10404000	11627000	14775	402	13804	29099	70453;70454;70455;70456;70457;70458;70459	70457		7	9606
TVIESSPESPVTITEPYR	0	1	Unmodified	2004.0052	0.0051515425	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0.816									1	1	1						17.392	17.392	2	8.044600000000001E-30	12917	DP690-10	241.84	189.59			0.73925	0.9137	NaN	1	0	Median	125340000	60788000	64548000	14776	1724	13805	29100;29101;29102	70460;70461;70462;70463;70464;70465;70466	70460		7	9606
TVIIEQSWGSPK	1	0	Unmodified	1343.7085	0.70851601	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	4	0				1													16.238	16.238	2	5.4524E-05	10208	DP690-4	128.91	91.841			1.0264	1.1263	NaN	1	0	Median	13691000	6873000	6818300	14777	461	13806	29103	70467	70467		1	9606
TVIPGMPTVIPPGLTR	0	1	Unmodified	1647.9382	0.93819837	1341	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	12	0												1					20.711	20.711	2	5.5324E-06	16700	DP690-12	132.86	115.05			0.67083	0.81659	NaN	1	0	Median	11209000	6580900	4627900	14778	1341	13807	29104	70468;70469;70470;70471	70469		4	9606
TVITEEFKVPDK	2	0	Unmodified	1404.75	0.75004648	1875	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	1	12	0												1					15.575	15.575	3	0.0027824	9841	DP690-12	82.85	71.346			0.86392	0.96591	NaN	1	0	Median	178720000	99699000	79024000	14779	1875	13808	29105	70472;70473;70474	70473		3	9606
TVITPDPNLSIDQVGVPR	0	1	Unmodified	1920.0316	0.031641064	579	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	10	0										2							18.917	18.917	2	0.006754	15218	DP690-10	127.79	77.859			NaN	NaN	NaN	0	0	Median	0	0	0	14780	579	13809	29106;29107	70475;70476	70476		2	9606
TVLAPGVVLIVQQGDLAR	0	1	Unmodified	1848.0833	0.083282705	1391	Q460N5	PARP14	Poly [ADP-ribose] polymerase 14	yes	yes	0	0	0	10	0										1							21.221	21.221	2	0.012887	18380	DP690-10	110.25	64.372			NaN	NaN	NaN	0	0	Median	0	0	0	14781	1391	13810	29108	70477	70477		1	9606
TVLCGTCGQPADK	1	0	Unmodified	1405.633	0.63298458	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	11.3	0.471											2	1					11.441	11.441	2	8.6805E-05	3865	DP690-12	149.33	126.41			0.7772	0.90727	5.6252	2	0	Median	218880000	119410000	99474000	14782	359	13811	29109;29110;29111	70478;70479;70480;70481;70482;70483;70484;70485;70486;70487;70488;70489;70490;70491;70492;70493	70486		16	9606
TVLDPVTGDLSDTR	0	1	Unmodified	1487.7468	0.74675201	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	10	0.707									1	2	1						17.309	17.309	2	7.2189E-14	12811	DP690-10	218.07	181.49			0.86031	1.0555	13.212	4	0	Median	514570000	280650000	233920000	14783	1329	13812	29112;29113;29114;29115	70494;70495;70496;70497;70498;70499;70500;70501;70502	70495		9	9606
TVLDQQQTPSR	0	1	Unmodified	1271.647	0.64697839	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	9.5	0.5									1	1							11.432	11.432	2	0.00015084	4441	DP690-10	172.59	111.77			0.62196	0.76894	25.689	2	0	Median	123330000	72113000	51214000	14784	732	13813	29116;29117	70503;70504;70505;70506	70503		4	9606
TVLEHYALEDDPLAAFK	1	0	Unmodified	1930.9676	0.96764382	1390	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	14	0														1			19.986	19.986	3	9.1212E-08	15540	DP690-14	149.6	130.31			0.69607	0.83387	NaN	1	0	Median	119330000	63633000	55695000	14785	1390	13814	29118	70507;70508;70509;70510	70507		4	9606
TVLELMNPEAQLPQVYPFAADLYQK	1	0	Oxidation (M)	2893.4572	0.45718228	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	1	0	10	0										1							22.767	22.767	2	2.8411E-15	20467	DP690-10	160.93	121.31			NaN	NaN	NaN	0	0	Median	3134600	3134600	0	14786	766	13815	29119	70511;70512	70511	1143	2	9606
TVLELQYVLDK	1	0	Unmodified	1319.7337	0.73366813	1275	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	11	0											1						19.98	19.98	2	0.066065	16515	DP690-11	67.726	67.726			0.89117	1.1	NaN	1	0	Median	17210000	9048400	8162000	14787	1275	13816	29120	70513	70513		1	9606
TVLELQYVLDKLGDDEVR	1	1	Unmodified	2104.1052	0.10519994	1275	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	1	11	0											1						22.177	22.177	3	1.491E-14	19481	DP690-11	195.38	165.7			1.0564	1.325	NaN	1	0	Median	36616000	18607000	18009000	14788	1275	13817	29121	70514;70515;70516;70517;70518	70515		5	9606
TVLGQQILGQLDSSSLALPSEAK	1	0	Unmodified	2354.2693	0.26930515	1963	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	11	0											1						22.132	22.132	2	0.00057057	19423	DP690-11	114.54	62.813			NaN	NaN	NaN	0	0	Median	0	0	0	14789	1963	13818	29122	70519	70519		1	9606
TVLGTPEVLLGALPGAGGTQR	0	1	Unmodified	2006.116	0.1160394	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	7	4			1								1						21.463	21.463	2	5.6158E-07	18573	DP690-11	159.18	137.63			0.69362	0.79918	13.51	2	0	Median	37648000	20465000	17184000	14790	713	13819	29123;29124	70520;70521;70522;70523;70524;70525;70526;70527	70522		8	9606
TVLIHCPEK	1	0	Unmodified	1095.5747	0.57466507	2240	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	12	0												3					10.853	10.853	2;3	0.013835	3233	DP690-12	106.68	70.126			NaN	NaN	NaN	0	0	Median	80958000	0	80958000	14791	2240	13820	29125;29126;29127	70528;70529;70530	70528		3	9606
TVLIMELINNVAK	1	0	Unmodified	1456.8323	0.83233632	392	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	13	0													1				23.658	23.658	2	0.040342	19894	DP690-13	66.262	42.887			0.75784	0.82241	NaN	1	0	Median	1385800	798170	587600	14792	392	13821	29128	70531;70532	70531		2	9606
TVLLLADQMISR	0	1	Oxidation (M)	1374.7541	0.754086	783;798	P49674;P48730	CSNK1E;CSNK1D	Casein kinase I isoform epsilon;Casein kinase I isoform delta	no	no	0	1	0	13	0													1				17.651	17.651	2	0.000863	12329	DP690-13	111.27	48.443			0.74894	0.88331	NaN	1	0	Median	125520000	72009000	53510000	14793	798;783	13822	29129	70533;70534;70535;70536	70534	1164	4	9606
TVLLLADQMISR	0	1	Unmodified	1358.7592	0.75917137	783;798	P49674;P48730	CSNK1E;CSNK1D	Casein kinase I isoform epsilon;Casein kinase I isoform delta	no	no	0	0	0	13	0													1				20.17	20.17	2	4.852E-05	15650	DP690-13	181.87	125.44			0.75851	0.92563	NaN	1	0	Median	39661000	23249000	16411000	14794	798;783	13822	29130	70537;70538;70539;70540	70538		4	9606
TVLMLADQMISR	0	1	Oxidation (M)	1392.7105	0.71050662	782	Q8N752;P48729	CSNK1A1L;CSNK1A1	Casein kinase I isoform alpha-like;Casein kinase I isoform alpha	yes	no	0	1	0	2	0		1															25.42	25.42	2	0.015888	18684	DP690-2	75.387	21.636			0.90208	0.92234	NaN	1	0	Median	3298100	1740700	1557400	14795	782	13823	29131	70541	70541	1161	1	9606
TVLPFSQEFQR	0	1	Unmodified	1350.6932	0.6932003	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	8.5	3.2			1							2	1						18.681	18.681	2	7.9109E-05	13327	DP690-3	163.88	109.81			0.96772	1.0758	NaN	1	0	Median	53202000	19416000	33786000	14796	1531	13824	29132;29133;29134;29135	70542;70543;70544;70545;70546;70547;70548	70546		7	9606
TVLQELINVLK	1	0	Unmodified	1268.7704	0.77038799	859	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	11	0											1						24.425	24.425	2	1.0424E-05	22220	DP690-11	193.41	160.03			1.1188	1.3783	NaN	1	0	Median	11435000	5757400	5677600	14797	859	13825	29136	70549;70550;70551;70552;70553;70554	70553		6	9606
TVLQVASIGPSSSLAMNTSYLK	1	0	Oxidation (M)	2282.1828	0.18279833	2553				yes	yes	0	1	0	11	0											1						19.226	19.226	3	0.020951	15069	DP690-11	50.226	21.615	+		0.3095	0.37297	NaN	1	0	Median	90685000	69378000	21307000	14798	2553	13826	29137	70555;70556	70555	2979	2	9606
TVLSLFDEEEDKMEDQNIIQAPQK	2	0	Oxidation (M)	2835.3484	0.34841969	1454	Q9Y4E1;Q641Q2	FAM21C;FAM21A	WASH complex subunit FAM21C;WASH complex subunit FAM21A	yes	no	0	1	1	10	0										2							18.982	18.982	3	0.0032603	15295	DP690-10	91.64	62.371			NaN	NaN	NaN	0	0	Median	0	0	0	14799	1454	13827	29138;29139	70557;70558	70558	2159	2	9606
TVLVALDTVSCLEQGNNSR	0	1	Unmodified	2075.0317	0.031717419	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	0	10	0										1							20.054	20.054	2	1.3834E-51	16835	DP690-10	333.44	291.02			0.77936	0.97478	NaN	1	0	Median	61002000	34096000	26906000	14800	311	13828	29140	70559;70560;70561;70562	70560		4	9606
TVMPYISTTPAK	1	0	Oxidation (M)	1323.6744	0.67443869	387	P05556	ITGB1	Integrin beta-1	yes	yes	0	1	0	3	0			1														13.518	13.518	2	0.0031356	6677	DP690-3	96.015	56.993			1.2861	1.3623	NaN	1	0	Median	10154000	4373500	5780400	14801	387	13829	29141	70563;70564	70563	410	2	9606
TVMVQEGNVESAYR	0	1	Oxidation (M)	1597.7406	0.74062078	1055	P82921	MRPS21	28S ribosomal protein S21, mitochondrial	yes	yes	0	1	0	16	0																1	13.829	13.829	2	1.7127E-08	7017	DP690-16	196.16	147.73			0.92266	1.0524	NaN	1	0	Median	37699000	18106000	19593000	14802	1055	13830	29142	70565;70566;70567;70568	70567	1652	4	9606
TVNALEIELQAQHSMR	0	1	Oxidation (M)	1854.9258	0.92579578	27	CON__Q92764;CON__O76013;CON__REFSEQ:XP_986630;Q92764;O76013	KRT35;KRT36	Keratin, type I cuticular Ha5;Keratin, type I cuticular Ha6	yes	no	0	1	0	9.5	0.5									1	1							20.325	20.325	2	0.0011321	15227	DP690-9	101.71	55.883		+	0.80681	0.93237	3.7285	2	0	Median	449580000	278150000	171430000	14803	27	13831	29143;29144	70569;70570;70571	70571	27	3	9606
TVNATGSSAAPGSSDKPSDPR	1	1	Unmodified	2000.9399	0.93992552	2417	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	1	10	0										1							10.481	10.481	3	0.017773	2942	DP690-10	83.167	45.729			NaN	NaN	NaN	0	0	Median	73023000	73023000	0	14804	2417	13832	29145	70572	70572		1	9606
TVNDLSSQLSPLDLHPSLK	1	0	Unmodified	2063.0899	0.089884225	765	P46939	UTRN	Utrophin	yes	yes	0	0	0	10	0										1							18.561	18.561	3	5.9329E-05	14692	DP690-10	112.82	112.82			0.61284	0.75682	NaN	1	0	Median	81039000	54775000	26264000	14805	765	13833	29146	70573;70574	70574		2	9606
TVNQQTMAAPVVKEEK	2	0	Oxidation (M)	1787.9087	0.90874874	2495	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	1	1	9	0									1								10.423	10.423	3	0.0039285	2700	DP690-9	71.286	55.046			0.76201	0.92164	NaN	1	0	Median	8337900	4355100	3982700	14806	2495	13834	29147	70575	70575	2931	1	9606
TVNVVQFEPSK	1	0	Unmodified	1246.6558	0.65575216	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3.5	0.5			1	1													15.651	15.651	2	7.1398E-05	9408	DP690-4	135.86	95.507			0.92362	0.9781	23.588	2	0	Median	136070000	71204000	64864000	14807	720	13835	29148;29149	70576;70577;70578;70579;70580;70581;70582;70583;70584;70585;70586	70582		11	9606
TVPEELVKPEELSK	2	0	Unmodified	1596.8611	0.86105349	2403	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	1	12	0												1					15.139	15.139	3	4.5134E-05	9191	DP690-12	122.1	81.216			0.65202	0.73379	NaN	1	0	Median	134580000	81348000	53232000	14808	2403	13836	29150	70587;70588;70589;70590;70591	70588		5	9606
TVPIDDSSETLEPVCR	0	1	Unmodified	1816.8513	0.85129344	2506	Q9Y5T5	USP16	Ubiquitin carboxyl-terminal hydrolase 16	yes	yes	0	0	0	11	0											1						16.257	16.257	2	0.030938	11223	DP690-11	97.121	59.793			NaN	NaN	NaN	0	0	Median	0	0	0	14809	2506	13837	29151	70592	70592		1	9606
TVPLAGHVGFDSLPDQLVNK	1	0	Unmodified	2106.111	0.11095402	1248	Q14141	SEPT6	Septin-6	yes	yes	0	0	0	13	0													2				18.63	18.63	3	0.00048511	13654	DP690-13	105.99	78.141			NaN	NaN	NaN	0	0	Median	45287000	0	45287000	14810	1248	13838	29152;29153	70593;70594;70595	70593		3	9606
TVPVEAVTSK	1	0	Unmodified	1029.5706	0.57062555	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	11.3	0.471											2	1					12.268	12.268	2	0.00028276	5327	DP690-11	124.92	77.348			0.80146	0.92554	5.0267	3	0	Median	601370000	336730000	264640000	14811	1267	13839	29154;29155;29156	70596;70597;70598;70599;70600;70601;70602;70603	70597		8	9606
TVQAFMEGSASEVLK	1	0	Oxidation (M)	1611.7814	0.78142296	1588	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	1	0	12	0												1					16.066	16.066	2	0.00097078	10491	DP690-12	105.65	73.644			0.85094	1.0252	NaN	1	0	Median	16818000	11037000	5781300	14812	1588	13840	29157	70604	70604	2249	1	9606
TVQAIVELK	1	0	Unmodified	999.59645	0.59644637	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	2	0		1															15.571	15.571	2	0.073575	8450	DP690-2	60.118	28.815			1.1178	1.1098	NaN	1	0	Median	3280800	1603600	1677200	14813	1437	13841	29158	70605	70605		1	9606
TVQDALESLVAR	0	1	Unmodified	1300.6987	0.69867961	1287	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	7	4			1								1						20.44	20.44	2	0.0039738	17290	DP690-11	124.67	64.738			0.83312	0.92502	NaN	1	0	Median	31225000	28611000	2614600	14814	1287	13842	29159;29160	70606;70607;70608;70609	70607		4	9606
TVQIEASTVEIEER	0	1	Unmodified	1602.8101	0.81008055	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	14	0														1			16.225	16.225	2	4.3119E-15	10556	DP690-14	237.76	186.03			0.73145	0.86102	NaN	1	0	Median	140600000	82507000	58090000	14815	1310	13843	29161	70610;70611;70612;70613;70614	70614		5	9606
TVQLTSSELESTLETLK	1	0	Unmodified	1877.9834	0.98335347	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10.5	0.5										1	1						21.14	21.14	2	7.0815E-12	18301	DP690-10	228.62	132.56			0.71962	0.87721	NaN	1	0	Median	76008000	62477000	13531000	14816	732	13844	29162;29163	70615;70616;70617;70618;70619	70616		5	9606
TVQSNSPISALAPTGK	1	0	Unmodified	1569.8362	0.83623572	313	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	0	15.5	0.5															1	1	15.793	15.793	2	6.2656E-05	9703	DP690-15	124.38	86.764			0.64719	0.74154	5.9309	2	0	Median	103410000	60728000	42677000	14817	313	13845	29164;29165	70620;70621;70622;70623	70622		4	9606
TVQSNSPISALAPTGKEEGLSTR	1	1	Unmodified	2342.2078	0.20776753	313	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	1	15	0															1		15.788	15.788	3	0.00017652	9823	DP690-15	109.22	90.285			0.74735	0.87143	NaN	1	0	Median	20999000	10587000	10412000	14818	313	13846	29166	70624;70625	70624		2	9606
TVQTAVFLYSLYK	1	0	Unmodified	1531.8286	0.82863115	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	10	0										1							20.874	20.874	2	7.9059E-05	17981	DP690-10	134.75	100.67			0.76857	0.94938	NaN	1	0	Median	144640000	74466000	70178000	14819	1297	13847	29167	70626;70627;70628	70626		3	9606
TVQVSATEDGNVTK	1	0	Unmodified	1447.7155	0.71545188	206	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	4	0				1													12.023	12.023	2	0.0083379	4685	DP690-4	114.72	64.367			NaN	NaN	NaN	0	0	Median	0	0	0	14820	206	13848	29168	70629	70629		1	9606
TVSFHLYISTAPCGDGALFDK	1	0	Unmodified	2298.0991	0.099068703	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						19.635	19.635	3	0.0009755	16170	DP690-11	74.324	59.999			0.75773	0.91654	NaN	1	0	Median	86380000	44767000	41613000	14821	897	13849	29169	70630;70631	70630		2	9606
TVSGSCMSTGFSR	0	1	Oxidation (M)	1391.5809	0.58094901	1507	Q6UWZ7	FAM175A	BRCA1-A complex subunit Abraxas	yes	yes	0	1	0	13	0													1				10.985	10.985	2	0.00016948	3393	DP690-13	123.62	95.22			0.83333	1.0086	NaN	1	0	Median	9319800	5024700	4295100	14822	1507	13850	29170	70632;70633;70634;70635	70632	2191	4	9606
TVSGVNGPLVILDHVK	1	0	Unmodified	1646.9356	0.93555583	547	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	yes	yes	0	0	0	12	0												1					18.306	18.306	3	0.050513	13569	DP690-12	44.045	36.131			0.71076	0.85449	NaN	1	0	Median	19340000	10657000	8682900	14823	547	13851	29171	70636	70636		1	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	2	0	Oxidation (M)	2944.4488	0.44880244	397	P06748	NPM1	Nucleophosmin	yes	yes	0	1	1	15	0.894														2	1	2	19.623	19.623	3;4	5.6224E-18	15072	DP690-14	172.77	154.91			0.74377	0.82028	9.4796	5	0	Median	1281500000	672700000	608770000	14824	397	13852	29172;29173;29174;29175;29176	70637;70638;70639;70640;70641;70642;70643;70644;70645;70646;70647;70648;70649;70650;70651;70652;70653;70654;70655	70637	424	19	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	2	0	Unmodified	2928.4539	0.45388781	397	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	14	0														1			20.169	20.169	3	2.8486E-08	15859	DP690-14	137.41	137.41			0.68814	0.76861	NaN	1	0	Median	147150000	82384000	64767000	14825	397	13852	29177	70656;70657;70658	70658		3	9606
TVSLLDENNVSSYLSK	1	0	Unmodified	1767.8891	0.88905915	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	8	3.54		1							1	1	1						19.489	19.489	2	1.3925E-27	14262	DP690-9	292.39	206.58			1.0102	1.0007	26.201	3	0	Median	226950000	119840000	107110000	14826	1046	13853	29178;29179;29180;29181	70659;70660;70661;70662;70663;70664;70665;70666;70667;70668;70669	70669		11	9606
TVSPDRLELEAAQK	1	1	Unmodified	1555.8206	0.82058566	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	11	0											1						13.83	13.83	3	0.039971	7656	DP690-11	56.139	24.363			0.88175	0.97651	NaN	1	0	Median	217120000	111680000	105440000	14827	1300	13854	29182	70670	70670		1	9606
TVSQIISLQTLK	1	0	Unmodified	1329.7868	0.78676633	285	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	12	0												1					18.476	18.476	2	0.00013064	13899	DP690-12	134.84	134.84			1.0412	1.2424	NaN	1	0	Median	67421000	35108000	32313000	14828	285	13855	29183	70671	70671		1	9606
TVSSPPTSPRPGSAATVSASTSNIIPPR	0	2	Unmodified	2734.425	0.42497095	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	1	11	0											1						14.78	14.78	3	2.7178E-07	9119	DP690-11	119.75	93.511			NaN	NaN	NaN	0	0	Median	31525000	31525000	0	14829	288	13856	29184	70672;70673	70673		2	9606
TVSSSVIEQLFFVR	0	1	Unmodified	1610.8668	0.86680757	458	P24468;P10589	NR2F2;NR2F1	COUP transcription factor 2;COUP transcription factor 1	yes	no	0	0	0	13	0													1				23.177	23.177	2	0.00028143	19313	DP690-13	112.94	89.184			0.95834	1.1317	NaN	1	0	Median	4280900	1930200	2350800	14830	458	13857	29185	70674;70675;70676;70677	70675		4	9606
TVSYNGILGPECGTK	1	0	Unmodified	1594.7661	0.76610724	556	P21980	TGM2	Protein-glutamine gamma-glutamyltransferase 2	yes	yes	0	0	0	3	0			1														16.127	16.127	2	0.004227	10176	DP690-3	119.39	75.616			NaN	NaN	NaN	0	0	Median	7220500	0	7220500	14831	556	13858	29186	70678;70679;70680	70678		3	9606
TVTAAGAENIQQK	1	0	Unmodified	1329.6888	0.6888432	1377	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	10.2	1.94									3	1				1			11.231	11.231	2	4.4705E-08	4106	DP690-10	197.79	197.79			0.78858	0.94519	8.9112	2	0	Median	193710000	109420000	84297000	14832	1377	13859	29187;29188;29189;29190;29191	70681;70682;70683;70684;70685;70686;70687;70688;70689;70690;70691	70683		11	9606
TVTAMDVVYALK	1	0	Oxidation (M)	1325.6901	0.69008876	990	P62805	HIST1H4A	Histone H4	yes	yes	0	1	0	10	3.46								3								1	18.28	18.28	2	0.00011051	12435	DP690-16	140.45	82.588			0.9428	1.005	3.8394	2	0	Median	706020000	340500000	365510000	14833	990	13860	29192;29193;29194;29195	70692;70693;70694;70695;70696;70697;70698;70699;70700;70701;70702;70703	70696	1510	12	9606
TVTAMDVVYALK	1	0	Unmodified	1309.6952	0.69517413	990	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	16	0																1	20.409	20.409	2	6.0638E-05	15134	DP690-16	129.38	58.033			1.0344	1.2114	NaN	1	0	Median	7600800	3685700	3915100	14834	990	13860	29196	70704;70705	70705		2	9606
TVTAMDVVYALKR	1	1	Oxidation (M)	1481.7912	0.79119978	990	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	14.4	3.2								1								4	16.855	16.855	2;3	8.9776E-06	10646	DP690-16	171.67	142.45			1.0494	1.0262	5.2868	3	0	Plateau	1027399999.9999999	501480000	525960000	14835	990	13861	29197;29198;29199;29200;29201	70706;70707;70708;70709;70710;70711;70712;70713;70714;70715;70716;70717	70706	1510	12	9606
TVTAMDVVYALKR	1	1	Unmodified	1465.7963	0.79628516	990	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	16	0																1	18.584	18.584	3	0.00019009	13061	DP690-16	105.36	78.609			1.0504	1.1854	NaN	1	0	Median	16932000	7391800	9539800	14836	990	13861	29202	70718;70719;70720	70720		3	9606
TVTCPMSGKPLR	1	1	Unmodified	1345.6846	0.68462622	2454	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	1	14	0														1			11.444	11.444	3	0.053882	4226	DP690-14	49.632	13.104			0.8843	1.1133	NaN	1	0	Median	31697000	17020000	14678000	14837	2454	13862	29203	70721	70721		1	9606
TVTIPTQPYQDIVTALK	1	0	Unmodified	1887.0353	0.035329459	1551	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	10	0										1							21.138	21.138	2	0.0039613	18268	DP690-10	109.44	41.986			NaN	NaN	NaN	0	0	Median	13663000	0	13663000	14838	1551	13863	29204	70722;70723	70722		2	9606
TVTISQVSDNK	1	0	Unmodified	1190.6143	0.61428128	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	9	4					1								1				12.418	12.418	2	2.7155E-05	5079	DP690-13	187.22	140.03			0.84993	0.89924	17.544	2	0	Median	195700000	101290000	94409000	14839	1823	13864	29205;29206	70724;70725;70726;70727;70728;70729;70730;70731	70724		8	9606
TVTIWEIINSEYFTAEQR	0	1	Unmodified	2199.0848	0.084798847	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.816									1	1	1						24.476	24.476	2	2.5788E-50	20001	DP690-9	328.81	328.81			0.8189	1.0231	NaN	1	0	Median	11618000	6137000	5480900	14840	1319	13865	29207;29208;29209	70732;70733;70734;70735;70736	70735		5	9606
TVTLGGDVFDPHGTLSGGAR	0	1	Unmodified	1955.9701	0.97010344	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	6.5	3.5			1							1							17.323	17.323	3	5.8635E-05	11732	DP690-3	109.77	109.77			1.0824	1.2674	36.112	2	0	Median	219680000	54596000	165080000	14841	317	13866	29210;29211	70737;70738;70739	70738		3	9606
TVTLPENEDELESTNR	0	1	Unmodified	1845.8592	0.85921559	630	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	3	0			1														15.818	15.818	2	0.0002165	9799	DP690-3	142.1	86.671			NaN	NaN	NaN	0	0	Median	3034500	0	3034500	14842	630	13867	29212	70740	70740		1	9606
TVTLPENEDELESTNRR	0	2	Unmodified	2001.9603	0.96032661	630	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	1	3	0			1														14.411	14.411	3	0.0003233	7851	DP690-3	91.307	67.315			2.6528	2.7443	NaN	1	0	Median	15050000	6309700	8740200	14843	630	13868	29213	70741;70742	70742		2	9606
TVTNAVVTVPAYFNDSQR	0	1	Unmodified	1980.9905	0.99050453	463	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	6.57	3.66			2	2					1		1	1					18.408	18.408	2	1.2835E-37	13696	DP690-12	297.18	297.18			0.86554	0.99643	59.776	5	0	Median	713050000	319380000	393670000	14844	463	13869	29214;29215;29216;29217;29218;29219;29220	70743;70744;70745;70746;70747;70748;70749;70750;70751;70752;70753;70754;70755;70756;70757;70758;70759;70760;70761;70762;70763	70750		21	9606
TVTPDASVYSDIVGK	1	0	Unmodified	1550.7828	0.78280317	2391	Q9ULP9	TBC1D24	TBC1 domain family member 24	yes	yes	0	0	0	12	0												1					17.79	17.79	2	0.00036724	12834	DP690-12	109.72	85.445			0.92403	1.0898	NaN	1	0	Median	84855000	43781000	41074000	14845	2391	13870	29221	70764;70765	70764		2	9606
TVTVWELISSEYFTAEQR	0	1	Unmodified	2158.0582	0.058249746	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10.4	0.8									1	1	3						24.675	24.675	2	9.2406E-37	20136	DP690-9	341.16	304.88			0.75905	0.93644	7.4268	2	0	Median	15131000	9558600	5572300	14846	1319	13871	29222;29223;29224;29225;29226	70766;70767;70768;70769;70770;70771;70772;70773;70774;70775;70776;70777	70774		12	9606
TVVAPSAVAGK	1	0	Unmodified	998.57605	0.57604528	2247	Q9NX14	NDUFB11	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial	yes	yes	0	0	0	16	0																1	11.63	11.63	2	0.048427	4222	DP690-16	87.258	37.9			NaN	NaN	NaN	0	0	Median	21201000	21201000	0	14847	2247	13872	29227	70778	70778		1	9606
TVVSGSCAAHSLLITTEGK	1	0	Unmodified	1929.983	0.98297631	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	10.4	3.41				2	1				4	1	1	2	2	3	1		15.569	15.569	2;3	7.0828000000000006E-34	9772	DP690-12	310.9	275.4			0.89305	0.98672	21.24	10	0	Median	4557500000	2414300000	2143199999.9999998	14848	2298	13873	29228;29229;29230;29231;29232;29233;29234;29235;29236;29237;29238;29239;29240;29241;29242;29243;29244	70779;70780;70781;70782;70783;70784;70785;70786;70787;70788;70789;70790;70791;70792;70793;70794;70795;70796;70797;70798;70799;70800;70801;70802;70803;70804;70805;70806;70807;70808;70809;70810;70811;70812;70813;70814;70815;70816;70817;70818;70819;70820;70821;70822	70790		44	9606
TVVTEHALHQHTISTLHWSPR	0	1	Unmodified	2449.2615	0.26147485	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0										1							13.594	13.594	4	0.053966	7469	DP690-10	38.103	31.723			1.1219	1.3954	NaN	1	0	Median	82044000	45496000	36549000	14849	1724	13874	29245	70823	70823		0	9606
TVWQYHFR	0	1	Unmodified	1135.5563	0.55631289	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	4	0				1													14.992	14.992	3	0.064535	8539	DP690-4	61.962	29.744			NaN	NaN	NaN	0	0	Median	0	0	0	14850	1120	13875	29246	70824	70824		1	9606
TVYERLAHASIMK	1	1	Oxidation (M)	1533.7973	0.79734779	1745	Q8WVF1	OSCP1	Protein OSCP1	yes	yes	0	1	1	7	0							1										16.921	16.921	3	0.027369	10701	DP690-7	55.776	15.898			0.043871	0.046239	NaN	1	0	Median	159120000	149700000	9421600	14851	1745	13876	29247	70825	70825	2321	1	9606
TVYFAEEVQCEGNSFHK	1	0	Unmodified	2043.8996	0.89964061	548	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	15	0															1		16.48	16.48	3	0.0008163	10743	DP690-15	82.942	73.527			0.91532	1.0797	NaN	1	0	Median	18806000	9942200	8863900	14852	548	13877	29248	70826	70826		1	9606
TVYGGGCSEMLMAHAVTQLANR	0	1	2 Oxidation (M)	2397.0875	0.087534513	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	2	0	8	4				1								1					15.282	15.282	3	6.1692E-05	8913	DP690-4	115.91	99.292			1.7227	1.941	NaN	1	0	Median	29546000	12491000	17056000	14853	1044	13878	29249;29250	70827;70828;70829;70830;70831;70832	70830	1577;1578	6	9606
TVYHAEEVQCDGR	0	1	Unmodified	1562.6784	0.67835487	1354	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	0	12.9	3.46							3	1	1					1	9	2	10.683	10.683	2;3	4.0212E-11	3074	DP690-15	237.53	210.71			0.83895	0.88511	22.135	8	0	Median	14929000000	9433200000	5495800000	14854	1354	13879	29251;29252;29253;29254;29255;29256;29257;29258;29259;29260;29261;29262;29263;29264;29265;29266;29267	70833;70834;70835;70836;70837;70838;70839;70840;70841;70842;70843;70844;70845;70846;70847;70848;70849;70850;70851;70852;70853;70854;70855;70856;70857;70858;70859;70860;70861;70862;70863;70864;70865;70866;70867;70868;70869;70870;70871;70872;70873;70874;70875;70876;70877;70878;70879;70880;70881	70836		49	9606
TVYSLQPPSALSGGQPADTQTR	0	1	Unmodified	2273.1288	0.12878893	2480	Q9Y448	KNSTRN	Small kinetochore-associated protein	yes	yes	0	0	0	15	0															1		17.122	17.122	2	1.7244E-05	11579	DP690-15	176.04	146.23			NaN	NaN	NaN	0	0	Median	0	0	0	14855	2480	13880	29268	70882	70882		1	9606
TVYVGNLNSQTTTADQLLEFFK	1	0	Unmodified	2488.2486	0.24856971	1759	Q8WXA9	SREK1	Splicing regulatory glutamine/lysine-rich protein 1	yes	yes	0	0	0	9	0									1								23.58	23.58	2	0.0008907	19041	DP690-9	93.51	75.964			0.51081	0.60876	NaN	1	0	Median	1785900	1054400	731540	14856	1759	13881	29269	70883	70883		1	9606
TWELSLYELHR	0	1	Unmodified	1445.7303	0.73031409	1126	Q06587	RING1	E3 ubiquitin-protein ligase RING1	yes	yes	0	0	0	13	0													2				18.757	18.757	3	0.0038207	13755	DP690-13	98.898	61.917			NaN	NaN	NaN	0	0	Median	0	0	0	14857	1126	13882	29270;29271	70884;70885	70884		2	9606
TWEQQQEVVSR	0	1	Unmodified	1388.6684	0.66844211	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	4	0				1													13.424	13.424	2	9.7769E-07	6521	DP690-4	168.83	115.07			NaN	NaN	NaN	0	0	Median	8975100	0	8975100	14858	2361	13883	29272	70886;70887	70887		2	9606
TWIEGLTGLSIGPDFQK	1	0	Unmodified	1860.9622	0.96216452	1934	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	14	0														1			22.496	22.496	2	0.00073893	18739	DP690-14	97.463	75.59			0.95159	1.1267	NaN	1	0	Median	11809000	5615100	6193700	14859	1934	13884	29273	70888;70889	70888		2	9606
TWLDDKQSQQAK	2	0	Unmodified	1446.7103	0.71030693	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	1	9	0									1								11.705	11.705	3	0.01096	4184	DP690-9	68.676	53.706			0.67664	0.82222	NaN	1	0	Median	6960000	4767800	2192200	14860	2411	13885	29274	70890;70891	70890		2	9606
TWNDPSVQQDIK	1	0	Unmodified	1429.6838	0.68375782	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3.5	0.5			1	1													14.932	14.932	2	0.0040458	8410	DP690-4	96.113	60.403			1.105	1.1707	NaN	1	0	Median	80739000	33461000	47278000	14861	462	13886	29275;29276	70892;70893;70894;70895	70895		4	9606
TWNHFSDNEAER	0	1	Unmodified	1504.6331	0.63311924	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	11	0											1						12.691	12.691	3	0.076042	5994	DP690-11	69.229	60.096			0.87052	1.0437	NaN	1	0	Median	112360000	57517000	54847000	14862	1941	13887	29277	70896	70896		0	9606
TYADYESVNECMEGVCK	1	0	Oxidation (M)	2069.8016	0.80164241	1061	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	0	1	0	16	0																1	14.526	14.526	2	1.9972E-10	7943	DP690-16	195.77	194.28			1.0513	1.2315	NaN	1	0	Median	10476000	4689600	5785900	14863	1061	13888	29278	70897;70898;70899;70900	70897	1657	4	9606
TYAICGAIR	0	1	Unmodified	1023.5172	0.51715019	1020	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	0	0	12	4								1								1	14.596	14.596	2	0.0085271	7984	DP690-16	91.041	67.613			0.91692	0.99447	5.2399	2	0	Median	352200000	183550000	168650000	14864	1020	13889	29279;29280	70901;70902;70903;70904;70905;70906;70907	70904		7	9606
TYEEGLKHEANNPQLK	2	0	Unmodified	1869.9221	0.92209062	642	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	1	4	0				1													11.915	11.915	3	0.00079316	4493	DP690-4	87.863	59.315			1.1901	1.2305	NaN	1	0	Median	14727000	7459100	7267900	14865	642	13890	29281	70908;70909	70908		2	9606
TYEEIASLVAEQPK	1	0	Unmodified	1576.7985	0.79845323	2507	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	7.5	3.5				1							1						18.795	18.795	2	0.002979	13349	DP690-4	88.338	59.381			0.82492	0.88528	NaN	1	0	Median	42576000	2249700	40327000	14866	2507	13891	29282;29283	70910;70911	70911		2	9606
TYFNILIKPETLAK	2	0	Unmodified	1649.9392	0.93924423	194	O43847	NRD1	Nardilysin	yes	yes	0	0	1	3	0			1														18.64	18.64	3	0.038658	13491	DP690-3	52.527	36.683			0.72172	0.78343	NaN	1	0	Median	13834000	7515800	6318300	14867	194	13892	29284	70912	70912		1	9606
TYFSCTSAHTSTGDGTAMITR	0	1	Oxidation (M)	2279.9787	0.97869557	632	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	1	0	12	0												1					13.442	13.442	3	0.041408	6838	DP690-12	65.085	14.211			NaN	NaN	NaN	0	0	Median	17809000	17809000	0	14868	632	13893	29285	70913;70914	70913	869	2	9606
TYGDVATGCR	0	1	Unmodified	1098.4764	0.47640759	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	0	10.5	0.5										1	1						11.455	11.455	2	0.0011627	4306	DP690-10	107.69	66.811			0.91854	1.121	6.2893	2	0	Median	103820000	55185000	48633000	14869	1234	13894	29286;29287	70915;70916;70917	70915		3	9606
TYGEPESAGPSR	0	1	Unmodified	1249.5575	0.55749468	817	P50402	EMD	Emerin	yes	yes	0	0	0	14.5	0.5														1	1		10.814	10.814	2	1.0514E-07	3175	DP690-14	201.61	160.16			0.67078	0.76942	1.4511	2	0	Median	251650000	148810000	102840000	14870	817	13895	29288;29289	70918;70919;70920;70921;70922;70923;70924;70925;70926	70918		9	9606
TYGGCEGPDAMYVK	1	0	Oxidation (M)	1562.6381	0.63812954	1327	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	1	0	12	4								1								1	13.314	13.314	2	4.5167E-05	6167	DP690-8	126.71	79.888			3.2772	3.7174	176.17	2	0	Median	43654000	11322000	32333000	14871	1327	13896	29290;29291	70927;70928;70929;70930;70931;70932;70933;70934	70934	2061	8	9606
TYGGCEGPDAMYVK	1	0	Unmodified	1546.6432	0.64321492	1327	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	8	0								1									14.636	14.636	2	0.003427	7650	DP690-8	125.23	105.62			NaN	NaN	NaN	0	0	Median	6601000	0	6601000	14872	1327	13896	29292	70935;70936	70936		2	9606
TYGVSFFLVK	1	0	Unmodified	1159.6277	0.6277465	2482	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	yes	no	0	0	0	2	0		1															20.385	20.385	2	0.03762	13957	DP690-2	68.371	44.341			1.2796	1.2597	NaN	1	0	Median	2166200	901510	1264700	14873	2482	13897	29293	70937;70938	70938		2	9606
TYHEVVDEIYFK	1	0	Unmodified	1541.7402	0.74021007	1447	Q5VTL8	PRPF38B	Pre-mRNA-splicing factor 38B	yes	yes	0	0	0	12	0												1					16.615	16.615	3	0.032142	11289	DP690-12	72.958	41.077			NaN	NaN	NaN	0	0	Median	49175000	0	49175000	14874	1447	13898	29294	70939	70939		1	9606
TYINPFVSFLDQR	0	1	Unmodified	1598.8093	0.80929269	327	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	6.75	3.77			2							1	1						22.486	22.486	2	0.00031875	17870	DP690-3	113.47	0			0.80074	0.88678	4.59	2	0	Median	20983000	5973000	15010000	14875	327	13899	29295;29296;29297;29298	70940;70941;70942;70943;70944;70945;70946;70947	70945		8	9606
TYITDPVSAPCAPPLQPK	1	0	Unmodified	1953.987	0.98699906	1806	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	4	0				1													17.387	17.387	2	0.070152	11519	DP690-4	79.633	49.826			NaN	NaN	NaN	0	0	Median	1338800	1338800	0	14876	1806	13900	29299	70948	70948		1	9606
TYIVEETVGQYLSNINLQGK	1	0	Unmodified	2268.1638	0.16377745	1429	Q5SWX8	ODR4	Protein odr-4 homolog	yes	yes	0	0	0	13	0													1				22.669	22.669	2	5.857E-10	18713	DP690-13	188.4	188.4			0.687	0.76419	NaN	1	0	Median	3575900	2287700	1288200	14877	1429	13901	29300	70949;70950;70951	70949		3	9606
TYLDWLEQPFPGAVPSLRPLLR	0	2	Unmodified	2567.39	0.39002941	1900	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	1	9	0									1								23.527	23.527	3	2.4067E-15	18921	DP690-9	170.16	158.86			0.60524	0.65606	NaN	1	0	Median	9810700	6253500	3557200	14878	1900	13902	29301	70952;70953	70953		2	9606
TYLPSQVSR	0	1	Unmodified	1049.5506	0.55055881	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	3	0			1														13.452	13.452	2	0.0051631	6555	DP690-3	99.136	70.218			2.0773	2.2735	NaN	1	0	Median	54659000	16786000	37873000	14879	670	13903	29302	70954;70955;70956;70957	70955		4	9606
TYNALNNLSVNAENQGK	1	0	Unmodified	1848.8966	0.89660415	2301	Q9P291	ARMCX1	Armadillo repeat-containing X-linked protein 1	yes	yes	0	0	0	13	0													1				15.946	15.946	2	1.759E-08	10099	DP690-13	177.83	147.1			1.0473	1.2101	NaN	1	0	Median	15636000	9093100	6542800	14880	2301	13904	29303	70958;70959;70960;70961	70959		4	9606
TYPGVMHSSCPQEMAAVK	1	0	2 Oxidation (M)	2023.8802	0.8801675	319	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	2	0	7	0							1										11.236	11.236	3	0.0095123	3748	DP690-7	56.906	46.848			0.75353	0.81039	NaN	1	0	Median	47011000	26690000	20322000	14881	319	13905	29304	70962;70963;70964;70965	70962	332;333	4	9606
TYPGVMHSSCPQEMAAVK	1	0	Oxidation (M)	2007.8853	0.88525288	319	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	1	0	7	0							1										12.484	12.484	3	0.0014747	5243	DP690-7	75.018	58.595			0.68821	0.74634	NaN	1	0	Median	24960000	14220000	10740000	14882	319	13905	29305	70966;70967	70967	332;333	2	9606
TYPVNTPER	0	1	Unmodified	1075.5298	0.52982336	1941	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	11	0											1						11.826	11.826	2	0.0060055	4706	DP690-11	95.741	50.061			0.7613	0.91568	NaN	1	0	Median	72788000	41308000	31480000	14883	1941	13906	29306	70968;70969;70970;70971	70969		4	9606
TYSLGSALRPSTSR	0	2	Unmodified	1494.7791	0.77905519	424	P08670	VIM	Vimentin	yes	yes	0	0	1	12.6	3.6				1								2	2		1	2	14.034	14.034	2;3	6.9315E-05	7492	DP690-12	104.79	72.541			0.76793	0.86073	27.015	8	0	Median	5563600000	3052599999.9999995	2511100000	14884	424	13907	29307;29308;29309;29310;29311;29312;29313;29314	70972;70973;70974;70975;70976;70977;70978;70979;70980;70981;70982;70983;70984;70985;70986;70987;70988;70989;70990;70991;70992;70993;70994	70973		23	9606
TYSMGGAYTAEQENEPTVGVIPR	0	1	Oxidation (M)	2485.1431	0.14311836	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	1	0	10	0										3							16.626	16.626	2	2.9698E-62	12024	DP690-10	320.35	280.54			0.69243	0.86712	NaN	1	0	Median	56293000	33837000	22455000	14885	311	13908	29315;29316;29317	70995;70996;70997;70998;70999	70997	322	5	9606
TYSMGGAYTAEQENEPTVGVIPR	0	1	Unmodified	2469.1482	0.14820374	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	10	0										2							17.925	17.925	2	1.7554E-42	13726	DP690-10	259.96	239.1			0.72525	0.90713	NaN	1	0	Median	35005000	21426000	13579000	14886	311	13908	29318;29319	71000;71001;71002;71003	71000		4	9606
TYSQVGFR	0	1	Unmodified	956.47158	0.4715802	2513	Q9Y619	SLC25A15	Mitochondrial ornithine transporter 1	yes	yes	0	0	0	15	0															1		13.16	13.16	2	0.041912	6240	DP690-15	100.19	57.714			NaN	NaN	NaN	0	0	Median	15049000	15049000	0	14887	2513	13909	29320	71004	71004		1	9606
TYSTSFTPMYHAVTK	1	0	Oxidation (M)	1748.808	0.80797206	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	1	0	4	0				2													13.946	13.946	2;3	2.0761E-05	7142	DP690-4	138.42	119.15			0.77175	0.82237	1.9305	2	0	Median	175150000	98685000	76463000	14888	353	13910	29321;29322	71005;71006;71007;71008;71009;71010;71011;71012	71012	362	8	9606
TYSTSFTPMYHAVTK	1	0	Unmodified	1732.8131	0.81305744	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	4	0				1													15.35	15.35	3	0.00022828	8989	DP690-4	104.09	88.936			0.70767	0.76288	NaN	1	0	Median	33633000	19119000	14514000	14889	353	13910	29323	71013;71014;71015;71016	71015		4	9606
TYSVVPMTSR	0	1	Oxidation (M)	1155.5594	0.55940893	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									1	1							13.231	13.231	2	0.0068595	6053	DP690-9	91.867	76.486			0.80474	0.9263	13.586	2	0	Median	355080000	195840000	159240000	14890	1046	13911	29324;29325	71017;71018;71019;71020;71021;71022	71021	1638	6	9606
TYSVVPMTSR	0	1	Unmodified	1139.5645	0.56449431	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								14.682	14.682	2	0.00063119	8039	DP690-9	114.89	98.177			0.77442	0.89098	NaN	1	0	Median	75018000	40918000	34100000	14891	1046	13911	29326	71023;71024	71024		2	9606
TYSYLTPDLWK	1	0	Unmodified	1385.6867	0.68671794	502	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	14	0														3			19.869	19.869	2	0.00014558	15391	DP690-14	182.76	182.76			0.82953	0.95382	NaN	1	0	Median	262590000	105920000	156670000	14892	502	13912	29327;29328;29329	71025;71026;71027;71028	71025		4	9606
TYTDELTPIESAVSVFK	1	0	Unmodified	1898.9513	0.95132506	258	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	15	0															1		22.648	22.648	2	0.00017228	17875	DP690-15	117.27	117.27			0.83571	0.9559	NaN	1	0	Median	2719400	1517000	1202500	14893	258	13913	29330	71029;71030;71031;71032;71033	71032		5	9606
TYTIANQFPLNK	1	0	Unmodified	1408.7351	0.73506511	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	8.33	3.3				1					1			1					17.256	17.256	2	4.5878E-10	11397	DP690-4	232.72	169.19			0.84564	0.89629	15.354	3	0	Median	1436700000	760630000	676030000	14894	2210	13914	29331;29332;29333	71034;71035;71036;71037;71038;71039;71040;71041;71042;71043	71040		10	9606
TYTQLVR	0	1	Unmodified	879.48142	0.48141661	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							12.863	12.863	2	0.042876	6397	DP690-10	110.61	57.057			NaN	NaN	NaN	0	0	Median	87369000	87369000	0	14895	269	13915	29334	71044	71044		1	9606
TYYYNTETK	1	0	Unmodified	1181.5241	0.52406928	254	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	11	0											1						12.266	12.266	2	4.5608E-05	5366	DP690-11	176.6	150.8			0.87282	1.0584	NaN	1	0	Median	72913000	37804000	35109000	14896	254	13916	29335	71045;71046	71045		2	9606
VAAAESMPLLLECAR	0	1	Oxidation (M)	1645.8168	0.81676261	82	O00410	IPO5	Importin-5	yes	yes	0	1	0	3	0			1														16.812	16.812	2	1.8575E-05	10974	DP690-3	136.96	70.397			1.0432	1.202	NaN	1	0	Median	20597000	10848000	9748500	14897	82	13917	29336	71047;71048;71049;71050;71051	71047	97	5	9606
VAAAESMPLLLECAR	0	1	Unmodified	1629.8218	0.82184798	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			2														19.543	19.543	2	0.030386	14527	DP690-3	95.618	63.979			NaN	NaN	NaN	0	0	Median	0	0	0	14898	82	13917	29337;29338	71052;71053	71052		2	9606
VAAASGHCGAFSGSDSSR	0	1	Unmodified	1722.738	0.73799501	2271	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	7	4			1								1						10.443	10.443	3	4.4387E-10	2771	DP690-11	151.73	132.04			0.71234	0.82889	24.168	2	0	Median	165970000	90998000	74972000	14899	2271	13918	29339;29340	71054;71055;71056	71054		3	9606
VAAAVDLIIK	1	0	Unmodified	1011.6328	0.63283187	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														17.725	17.725	2	0.00063119	12278	DP690-3	114.89	89.158			0.87368	0.90159	2.4941	2	0	Median	34405000	17929000	16475000	14900	789	13919	29341;29342	71057;71058;71059;71060;71061;71062;71063	71061		7	9606
VAAAVVR	0	1	Unmodified	684.42826	0.42825883	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1															11.363	11.363	2	0.011815	3302	DP690-1	124.34	56.967			NaN	NaN	NaN	0	0	Median	698520	698520	0	14901	585	13920	29343;29344	71064;71065;71066	71064		3	9606
VAACELLHSMVMFMLGK	1	0	Unmodified	1935.9443	0.94428808	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							25.677	25.677	3	0.00048189	21254	DP690-9	89.466	69.913			0.93781	1.0946	NaN	1	0	Median	2846200	2163900	682340	14902	1046	13921	29345;29346	71067;71068;71069;71070	71068		4	9606
VAACELLHSMVMFMLGK	1	0	3 Oxidation (M)	1983.929	0.92903195	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	3	0	9	0									1								17.886	17.886	3	0.0048397	12265	DP690-9	61.649	47.23			0.81165	1.0399	NaN	1	0	Median	14375000	8220900	6154500	14903	1046	13921	29347	71071;71072	71071	1639;1640;1641	2	9606
VAACELLHSMVMFMLGK	1	0	Oxidation (M)	1951.9392	0.9392027	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									2								23.314	23.314	3	0.006075	20242	DP690-9	66.674	44.772			0.64239	0.79097	41.453	2	0	Median	6375000	3770500	2604500	14904	1046	13921	29348;29349	71073;71074;71075;71076	71074	1639;1640;1641	4	9606
VAAETQSPSLFGSTK	1	0	Unmodified	1521.7675	0.76748745	2379	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	12	0												1					15.09	15.09	2	0.004396	9268	DP690-12	155.47	101.88			NaN	NaN	NaN	0	0	Median	44894000	44894000	0	14905	2379	13922	29350	71077;71078	71077		2	9606
VAALQNLVK	1	0	Unmodified	954.58622	0.58621603	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	7	4			1								1						15.432	15.432	2	0.0014818	9218	DP690-3	120.65	71.203			0.97631	1.084	6.8714	2	0	Median	175810000	89310000	86504000	14906	1300	13923	29351;29352	71079;71080;71081;71082;71083;71084;71085	71083		7	9606
VAALTFEANVLAELEK	1	0	Unmodified	1716.9298	0.92980175	2059	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	9	0									1								23.193	23.193	2	0.00056154	18596	DP690-9	104.59	104.59			0.76501	0.90528	NaN	1	0	Median	1586100	913670	672400	14907	2059	13924	29353	71086;71087;71088	71087		3	9606
VAAPDVVVPTLDTVR	0	1	Unmodified	1550.8668	0.86680757	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								18.738	18.738	2	1.3423E-05	13302	DP690-9	162.49	127.77			0.8304	0.93628	1.8402	2	0	Median	31581000	18178000	13403000	14908	1264	13925	29354;29355	71089;71090;71091;71092;71093;71094;71095;71096	71094		8	9606
VAASTGIDLLLLDDFK	1	0	Unmodified	1689.9189	0.91890272	1689	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	yes	yes	0	0	0	14	0														1			23.428	23.428	2	0.0031006	19737	DP690-14	120.84	66.495			NaN	NaN	NaN	0	0	Median	2550700	2550700	0	14909	1689	13926	29356	71097	71097		1	9606
VAASVLNPYVK	1	0	Unmodified	1159.6601	0.66010926	773	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	16	0																1	15.791	15.791	2	9.6253E-05	9607	DP690-16	150.36	95.38			0.68147	0.78312	NaN	1	0	Median	34033000	21191000	12842000	14910	773	13927	29357	71098;71099;71100;71101	71101		4	9606
VAAYDKLEK	2	0	Unmodified	1035.5601	0.56006086	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		1															10.796	10.796	2	0.0019628	2903	DP690-2	150.36	78.484			1.166	1.2105	NaN	1	0	Median	43768000	20239000	23529000	14911	668	13928	29358	71102;71103;71104;71105	71104		4	9606
VACAEEWQESR	0	1	Unmodified	1363.5827	0.58266357	270	O75663	TIPRL	TIP41-like protein	yes	yes	0	0	0	7	0							1										13.074	13.074	2	0.00063668	6046	DP690-7	109.83	65.453			1.6156	1.8323	NaN	1	0	Median	25190000	12597000	12593000	14912	270	13929	29359	71106	71106		1	9606
VACIGAWHPAR	0	1	Unmodified	1236.6186	0.61859557	698	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	0	13	0													3				13.166	13.166	3	0.0009504	6256	DP690-13	96.143	65.58			0.94504	1.1601	NaN	1	0	Median	28914000	9615500	19299000	14913	698	13930	29360;29361;29362	71107;71108;71109	71108		2	9606
VACITEQVLTLVNK	1	0	Unmodified	1586.8702	0.87017839	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												1					20.728	20.728	2	7.9811E-05	16783	DP690-12	190.57	141.38			0.72827	0.86758	NaN	1	0	Median	44739000	26030000	18709000	14914	375	13931	29363	71110;71111;71112	71111		3	9606
VACITEQVLTLVNKR	1	1	Unmodified	1742.9713	0.97128941	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	1	12	0												2					19.339	19.339	3	8.6142E-15	14956	DP690-12	222.73	166.83			NaN	NaN	NaN	0	0	Median	0	0	0	14915	375	13932	29364;29365	71113;71114	71113		2	9606
VACRAIGILSR	0	2	Acetyl (Protein N-term)	1256.7023	0.7023252	713	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	1	0	1	11	0											1						10.725	10.725	3	0.048412	3141	DP690-11	67.726	13.309			NaN	NaN	NaN	0	0	Median	81373000	81373000	0	14916	713	13933	29366	71115	71115		1	9606
VADGGGAGGTFQPYLDTLR	0	1	Unmodified	1893.9221	0.92209062	2502	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	15	0															1		19.232	19.232	2	4.1042E-12	14260	DP690-15	177.38	152.31			0.6145	0.70926	NaN	1	0	Median	9405100	5465600	3939400	14917	2502	13934	29367	71116;71117	71116		2	9606
VADGLPLAASMQEDEQSGR	0	1	Oxidation (M)	1988.9109	0.91093358	253	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	1	0	15	0															1		15.393	15.393	2	0.001049	9277	DP690-15	115.12	94.077			NaN	NaN	NaN	0	0	Median	6941300	6941300	0	14918	253	13935	29368	71118	71118	258	1	9606
VADIGLAAWGR	0	1	Unmodified	1127.6087	0.60874239	571	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	5	0					1												18.237	18.237	2	0.00029452	12124	DP690-5	120.87	80.09			0.78049	0.81065	NaN	1	0	Median	78789000	35718000	43072000	14919	571	13936	29369	71119;71120;71121;71122	71119		4	9606
VADLYELVQYAGNIIPR	0	1	Unmodified	1933.0309	0.030912783	1916	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	11	0											2						25.303	25.303	2	0.018895	23256	DP690-11	107.09	63.545			NaN	NaN	NaN	0	0	Median	0	0	0	14920	1916	13937	29370;29371	71123;71124	71124		2	9606
VADMALHYANK	1	0	Oxidation (M)	1247.5969	0.59685707	826	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	4	0				2													10.823	10.823	2;3	0.00013118	3281	DP690-4	128.6	106.61			1.6817	1.7983	0.74593	2	0	Median	68656000	25033000	43623000	14921	826	13938	29372;29373	71125;71126;71127;71128;71129;71130;71131;71132	71130	1247	8	9606
VADNAQQQYVR	0	1	Unmodified	1290.6317	0.63166267	1721	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	11	0											1						11.219	11.219	2	0.00042137	3969	DP690-11	116.05	76.428			0.89165	1.0946	NaN	1	0	Median	15241000	8527400	6713800	14922	1721	13939	29374	71133;71134	71134		2	9606
VADWTGATYQDK	1	0	Unmodified	1353.6201	0.62009493	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	12	0												1					14.495	14.495	2	2.9142E-06	8334	DP690-12	195.36	136.38			0.91032	1.0626	NaN	1	0	Median	99535000	51196000	48339000	14923	154	13940	29375	71135;71136	71136		2	9606
VADWTGATYQDKR	1	1	Unmodified	1509.7212	0.72120596	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	1	12	0												1					13.012	13.012	3	0.00019653	6210	DP690-12	145.31	79.47			1.007	1.0796	NaN	1	0	Median	308430000	150430000	157990000	14924	154	13941	29376	71137;71138;71139	71138		3	9606
VADYCENNYIQATDK	1	0	Unmodified	1802.7781	0.77812849	1636	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	0	8	4				1								1					14.772	14.772	2	0.0035924	8749	DP690-12	134.49	93.326			NaN	NaN	NaN	0	0	Median	13935000	10891000	3043800	14925	1636	13942	29377;29378	71140;71141	71140		2	9606
VADYCENNYIQATDKR	1	1	Unmodified	1958.8792	0.87923952	1636	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	1	12	0												1					13.639	13.639	3	3.5176E-05	7100	DP690-12	121.13	102.95			0.73506	0.92515	NaN	1	0	Median	40707000	21612000	19095000	14926	1636	13943	29379	71142;71143	71143		2	9606
VAEAIIDAIEDFVQK	1	0	Unmodified	1659.872	0.87195252	1391	Q460N5	PARP14	Poly [ADP-ribose] polymerase 14	yes	yes	0	0	0	10	0										1							25.585	25.585	2	0.0012633	23770	DP690-10	93.011	60.977			0.70149	0.83031	NaN	1	0	Median	2858300	1683200	1175100	14927	1391	13944	29380	71144;71145	71145		2	9606
VAECSTGTLDYILQR	0	1	Unmodified	1724.8403	0.84033482	2064	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	4	0				1													18.74	18.74	2	6.2687E-10	13254	DP690-4	206.97	184.25			0.86799	1.0118	NaN	1	0	Median	13173000	7075800	6097300	14928	2064	13945	29381	71146;71147;71148;71149	71146		4	9606
VAEELALEQAKK	2	0	Unmodified	1327.7347	0.73473076	2250	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	1	15	0															1		12.672	12.672	2	0.00033007	5548	DP690-15	146.11	116.94			0.83892	0.96004	NaN	1	0	Median	14104000	6977700	7126400	14929	2250	13946	29382	71150;71151;71152	71150		3	9606
VAEFFQGVDVIVNASSVEDIDAGAIGQR	0	1	Unmodified	2905.4458	0.44576597	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	0	11.3	0.471											2	1					23.571	23.571	2;3	1.6808E-70	21304	DP690-11	276.8	276.8			0.72881	0.89546	NaN	1	0	Median	15473000	7963200	7510000	14930	1365	13947	29383;29384;29385	71153;71154;71155;71156;71157;71158;71159	71155		7	9606
VAEFHTELER	0	1	Unmodified	1229.6041	0.60405094	778	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	7	0							1										12.964	12.964	3	0.0010729	5779	DP690-7	94.692	49.324			1.3569	1.5637	NaN	1	0	Median	16347000	7030600	9316700	14931	778	13948	29386	71160;71161	71160		2	9606
VAEHHVATLSGHSQEVCGLR	0	1	Unmodified	2186.0651	0.065083233	1163	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	0	0	8	4				1								1					11.277	11.277	4	1.3959E-05	3940	DP690-12	159.54	138.05			0.99625	1.1572	NaN	1	0	Median	99711000	96343000	3368300	14932	1163	13949	29387;29388	71162;71163;71164	71163		3	9606
VAEITELILK	1	0	Unmodified	1127.6802	0.680176	1123	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	0	0	4	0				1													19.592	19.592	2	0.0023659	14236	DP690-4	99.802	85.665			1.1115	1.2169	NaN	1	0	Median	12651000	6197700	6453500	14933	1123	13950	29389	71165;71166;71167	71165		3	9606
VAELDKITYER	1	1	Unmodified	1335.7034	0.70343063	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	1	10	0										1							14.16	14.16	3	0.00029877	8262	DP690-10	108.9	81.754			0.97457	1.1777	NaN	1	0	Median	140890000	81365000	59528000	14934	2215	13951	29390	71168;71169	71168		2	9606
VAEQTPLSALYLASLIK	1	0	Unmodified	1816.0346	0.034601177	629	P30837	ALDH1B1	Aldehyde dehydrogenase X, mitochondrial	yes	yes	0	0	0	4	0				1													23.38	23.38	2	0.0052369	18329	DP690-4	74.237	74.237			0.58622	0.61817	NaN	1	0	Median	844520	521630	322880	14935	629	13952	29391	71170;71171	71171		2	9606
VAEQVGIDR	0	1	Unmodified	985.51926	0.51925868	1214	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	12	0												2					11.778	11.778	2	0.0033106	4504	DP690-12	106.6	27.125			1.0649	1.2667	NaN	1	0	Median	69876000	35968000	33908000	14936	1214	13953	29392;29393	71172;71173;71174	71173		3	9606
VAETDYEMETQR	0	1	Oxidation (M)	1486.6246	0.62458797	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	1	0	9	0									1								12.113	12.113	2	0.0033437	4728	DP690-9	94.692	70.401			0.94231	1.1777	NaN	1	0	Median	4124400	1873200	2251200	14937	550	13954	29394	71175;71176	71175	714	2	9606
VAEVEGEQVDNK	1	0	Unmodified	1315.6256	0.62557424	308	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	11	0											1						11.228	11.228	2	0.00032203	3901	DP690-11	151.22	132.68			0.85455	1.0464	NaN	1	0	Median	22432000	12223000	10209000	14938	308	13955	29395	71177;71178;71179;71180	71178		4	9606
VAEVLSSLLGGEGHFSK	1	0	Unmodified	1728.9046	0.90464964	2268	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	12	0												1					19.087	19.087	3	0.028339	14638	DP690-12	74.726	38.257			NaN	NaN	NaN	0	0	Median	0	0	0	14939	2268	13956	29396	71181	71181		1	9606
VAEVQQVLRPAEK	1	1	Unmodified	1465.8253	0.8252771	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	1	10	0										1							13.174	13.174	3	0.00045904	6841	DP690-10	101.39	81.65			0.79958	0.94427	NaN	1	0	Median	198090000	97762000	100320000	14940	1234	13957	29397	71182;71183	71183		2	9606
VAFGSLAANGPTTLVDK	1	0	Unmodified	1659.8832	0.88318591	2379	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	12	0												1					18.341	18.341	2	0.00020792	13664	DP690-12	115.12	84.288			0.77504	0.93083	NaN	1	0	Median	27707000	14655000	13052000	14941	2379	13958	29398	71184;71185	71184		2	9606
VAFHPARPFLLVASQR	0	2	Unmodified	1808.021	0.020957219	1247	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	1	11	0											1						16.151	16.151	4	0.015337	11149	DP690-11	55.885	55.885			0.57017	0.70285	NaN	1	0	Median	58911000	38852000	20059000	14942	1247	13959	29399	71186	71186		1	9606
VAFITGGGSGIGFR	0	1	Unmodified	1337.7092	0.70918471	2219	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	0	0	15	0															1		18.401	18.401	2	0.0033374	13222	DP690-15	87.184	52.932			0.78857	0.90955	NaN	1	0	Median	8310300	4647800	3662500	14943	2219	13960	29400	71187;71188	71188		2	9606
VAGESAEPEPEPEADYYAK	1	0	Unmodified	2050.9007	0.90074605	358	P01137	TGFB1	Transforming growth factor beta-1;Latency-associated peptide	yes	yes	0	0	0	13	0													1				14.749	14.749	2	0.00033238	8384	DP690-13	135.94	122.96			0.87486	1.0135	NaN	1	0	Median	17125000	11330000	5795100	14944	358	13961	29401	71189;71190	71189		2	9606
VAGHSLGYGFVNYVTAK	1	0	Unmodified	1781.9101	0.91006937	1346	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	14	0														1			17.136	17.136	3	9.8691E-08	11824	DP690-14	145.79	145.79			0.86537	1.0004	NaN	1	0	Median	236680000	130970000	105710000	14945	1346	13962	29402	71191;71192;71193;71194	71192		4	9606
VAGINACGR	0	1	Unmodified	916.45488	0.45488428	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	11	0											1						10.92	10.92	2	3.0148E-10	3470	DP690-11	184.16	104.22			NaN	NaN	NaN	0	0	Median	121220000	121220000	0	14946	837	13963	29403	71195;71196	71196		2	9606
VAGLAVFHGK	1	0	Unmodified	997.5709	0.57090032	1911	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	3	0			1														13.406	13.406	2	0.00066613	6616	DP690-3	113.89	87.95			1.2526	1.3483	NaN	1	0	Median	18254000	8365400	9889100	14947	1911	13964	29404	71197;71198;71199;71200	71199		4	9606
VAGMDVELTVEER	0	1	Oxidation (M)	1462.6974	0.69735898	970	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	1	0	11	4							1								1		15.224	15.224	2	0.0025626	8528	DP690-7	123.79	89.586			NaN	NaN	NaN	0	0	Median	4453200	0	4453200	14948	970	13965	29405;29406	71201;71202	71202	1489	2	9606
VAGQLLPLAYNLLK	1	0	Unmodified	1511.9076	0.90755017	2246	Q9NWY4;A8MVJ9	C4orf27	UPF0609 protein C4orf27;Putative UPF0609 protein C4orf27-like	yes	no	0	0	0	14	0														1			22.393	22.393	2	0.0034315	18646	DP690-14	86.882	86.882			0.78616	0.93138	NaN	1	0	Median	12488000	7100900	5387100	14949	2246	13966	29407	71203;71204	71203		2	9606
VAGTGEGGLEEMVEELNSGK	1	0	Oxidation (M)	2020.9259	0.92591494	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	1	0	9.67	4.03				1								1	1				17.83	17.83	2	9.6836E-38	12101	DP690-4	293.53	272.5			0.93567	1.1161	21.277	3	0	Median	112940000	54782000	58160000	14950	2361	13967	29408;29409;29410	71205;71206;71207;71208;71209;71210;71211;71212;71213;71214;71215;71216	71214	2798	12	9606
VAGTGEGGLEEMVEELNSGK	1	0	Unmodified	2004.931	0.93100032	2361	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	12	0												1					21.43	21.43	2	7.8517E-12	17674	DP690-12	168	149.18			1.0469	1.2685	NaN	1	0	Median	13035000	6404600	6630900	14951	2361	13967	29411	71217;71218	71217		2	9606
VAGVVAPTLPR	0	1	Unmodified	1078.6499	0.64987892	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	9	3.08				1					1		1	1					15.477	15.477	2	0.00054432	10110	DP690-11	112.11	73.085			0.69017	0.81619	6.8908	4	0	Median	460950000	272210000	188740000	14952	751	13968	29412;29413;29414;29415	71219;71220;71221;71222;71223;71224;71225;71226;71227;71228	71221		10	9606
VAGVVAPTLPREDLEK	1	1	Unmodified	1692.941	0.94103514	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	12	0												1					15.556	15.556	3	0.0002263	9821	DP690-12	104.55	70.581			0.75287	0.88528	NaN	1	0	Median	96085000	48291000	47794000	14953	751	13969	29416	71229	71229		1	9606
VAIHEAMEQQTISIAK	1	0	Oxidation (M)	1783.9138	0.91383411	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	0	7	4			1								1						13.355	13.355	3	7.1656E-05	6982	DP690-11	118.52	92.7			0.77739	0.84684	0.1107	2	0	Median	253340000	139520000	113820000	14954	652	13970	29417;29418	71230;71231;71232	71230	912	3	9606
VAIHEAMEQQTISIAK	1	0	Unmodified	1767.9189	0.91891949	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	11	0											1						14.816	14.816	3	0.039343	9112	DP690-11	70.134	36.93			NaN	NaN	NaN	0	0	Median	0	0	0	14955	652	13970	29419	71233	71233		1	9606
VAIHYINPPNPAK	1	0	Unmodified	1432.7827	0.78268401	1045	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	14	0														1			13.733	13.733	3	0.00011263	7174	DP690-14	112.94	112.94			0.69574	0.80357	NaN	1	0	Median	240950000	128470000	112490000	14956	1045	13971	29420	71234;71235;71236	71236		3	9606
VAIPASVLPGPEEPGGQR	0	1	Unmodified	1772.9421	0.94209778	781	P48681	NES	Nestin	yes	yes	0	0	0	11	0.894										2	1	2					17.613	17.613	2	0.00040354	13175	DP690-10	149.41	93.367			NaN	NaN	NaN	0	0	Median	51697000	41866000	9830800	14957	781	13972	29421;29422;29423;29424;29425	71237;71238;71239;71240;71241;71242;71243	71237		7	9606
VAISLGFLGGAK	1	0	Unmodified	1131.6652	0.66519463	233	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	10	0										1							19.857	19.857	2	0.0066808	16530	DP690-10	81.338	27.563			0.82318	1.0153	NaN	1	0	Median	54888000	28906000	25982000	14958	233	13973	29426	71244;71245	71244		2	9606
VALAGLLGFGLGK	1	0	Unmodified	1214.7387	0.73869393	1410	Q56VL3	OCIAD2	OCIA domain-containing protein 2	yes	yes	0	0	0	11	3.56								1	1							1	22.452	22.452	2	4.9259E-05	17319	DP690-16	143.86	127.02			0.90082	0.96803	28.352	3	0	Plateau	171470000	89736000	81739000	14959	1410	13974	29427;29428;29429	71246;71247;71248;71249;71250;71251;71252;71253;71254;71255;71256;71257;71258;71259;71260;71261	71248		16	9606
VALDMTTLTIMR	0	1	2 Oxidation (M)	1395.7102	0.71017227	983	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	2	0	6	0						1											16.524	16.524	2	0.0089634	9979	DP690-6	82.417	61.418			0.97684	1.1197	NaN	1	0	Median	6900100	3586600	3313500	14960	983	13975	29430	71262;71263	71263	1501;1502	2	9606
VALEGLRPTIPPGISPHVCK	1	1	Unmodified	2140.1827	0.18267917	1206	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	1	13	0													1				16.497	16.497	4	0.0033221	10853	DP690-13	62.966	53.492			0.44977	0.53608	NaN	1	0	Median	44051000	28291000	15760000	14961	1206	13976	29431	71264;71265	71265		2	9606
VALEIFQHSK	1	0	Unmodified	1170.6397	0.63970816	2263	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	14	0														1			15.06	15.06	3	4.1441E-05	8983	DP690-14	118.03	118.03			0.95994	1.1383	NaN	1	0	Median	13625000	6764600	6860200	14962	2263	13977	29432	71266;71267	71266		2	9606
VALLDVFR	0	1	Unmodified	931.5491	0.54910224	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	10.3	0.943									1		2						20.552	20.552	2	0.047688	17281	DP690-11	134.06	109.06			0.81976	0.93588	5.703	2	0	Median	683910000	366750000	317160000	14963	581	13978	29433;29434;29435	71268;71269;71270	71269		1	9606
VALPDGTTVTVR	0	1	Unmodified	1227.6823	0.68230126	1892	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	12	0												1					16.092	16.092	2	0.00090574	10552	DP690-12	106.4	61.032			0.7572	0.8986	NaN	1	0	Median	51278000	30453000	20825000	14964	1892	13979	29436	71271;71272;71273	71273		3	9606
VALQAQIENHK	1	0	Unmodified	1249.6779	0.67788459	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								11.946	11.946	3	0.012065	4491	DP690-9	67.214	33.254			0.71238	0.91004	NaN	1	0	Median	10846000	5998200	4847600	14965	1762	13980	29437	71274;71275	71274		2	9606
VALSECYTVASVAEMPQNYRPHPQR	0	2	Unmodified	2902.3854	0.38543109	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	1	11	0											1						16.868	16.868	4	0.018432	12092	DP690-11	63.639	42.628			NaN	NaN	NaN	0	0	Median	36119000	0	36119000	14966	1269	13981	29438	71276	71276		1	9606
VALSECYTVASVAEMPQNYRPHPQR	0	2	Oxidation (M)	2918.3803	0.38034572	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	1	1	12	0												1					15.779	15.779	4	0.00026932	10070	DP690-12	77.08	58.985			0.73586	0.83435	NaN	1	0	Median	123310000	73014000	50298000	14967	1269	13981	29439	71277;71278	71277	1941	2	9606
VALSSETEVALAR	0	1	Unmodified	1344.7249	0.72489436	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10.5	0.5										1	1						15.951	15.951	2	1.1876E-10	10846	DP690-10	240.38	141.86			0.89836	1.0255	12.175	2	0	Median	851960000	460800000	391170000	14968	604	13982	29440;29441	71279;71280;71281;71282;71283;71284	71280		6	9606
VALTENYELVGVIVHSGQAHAGHYYSFIK	1	0	Unmodified	3201.6247	0.62473339	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															19.661	19.661	5	0.012209	13189	DP690-2	39.466	39.466			1.1495	1.1539	NaN	1	0	Median	5945900	2869400	3076600	14969	2418	13983	29442	71285;71286	71286		2	9606
VALTGLTVAEYFR	0	1	Unmodified	1438.782	0.78201531	392	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	13	0													1				21.137	21.137	2	0.067569	17021	DP690-13	83.081	34.083			NaN	NaN	NaN	0	0	Median	4068700	4068700	0	14970	392	13984	29443	71287	71287		1	9606
VALVVHPGTAR	0	1	Unmodified	1118.656	0.65602693	1164	Q12846	STX4	Syntaxin-4	yes	yes	0	0	0	14	0														2			11.541	11.541	3	0.0045086	4115	DP690-14	95.483	55.61			NaN	NaN	NaN	0	0	Median	0	0	0	14971	1164	13985	29444;29445	71288;71289	71288		2	9606
VALVYGQMNEPPGAR	0	1	Unmodified	1600.8032	0.80316145	392	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	13	0													1				15.953	15.953	2	0.017263	10085	DP690-13	109.16	66.946			NaN	NaN	NaN	0	0	Median	0	0	0	14972	392	13986	29446	71290	71290		1	9606
VANILHDDCAFLSAFGDVSKPER	1	1	Unmodified	2560.238	0.2380218	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	1	7	3.03					2	2							1				19.608	19.608	3;4	1.0164E-37	13821	DP690-5	236.6	236.6			0.76238	0.83007	11.87	5	0	Median	1012399999.9999999	558040000	454350000	14973	1989	13987	29447;29448;29449;29450;29451	71291;71292;71293;71294;71295;71296;71297;71298;71299;71300;71301;71302;71303;71304;71305;71306;71307;71308;71309;71310;71311	71298		21	9606
VANPSGNLTETYVQDR	0	1	Unmodified	1762.8486	0.84859132	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10.2	4.55		1	2						1	2	1	1	1	2	1	1	15.108	15.108	2	4.1741E-58	9590	DP690-10	287.76	234.74			0.78542	0.88941	10.479	8	0	Median	2857200000	1604899999.9999998	1252300000	14974	549	13988	29452;29453;29454;29455;29456;29457;29458;29459;29460;29461;29462;29463;29464	71312;71313;71314;71315;71316;71317;71318;71319;71320;71321;71322;71323;71324;71325;71326;71327;71328;71329;71330;71331;71332;71333;71334;71335;71336;71337;71338;71339;71340;71341;71342;71343;71344;71345;71346;71347;71348;71349;71350;71351;71352;71353;71354;71355	71313		44	9606
VANVELYYR	0	1	Unmodified	1125.5819	0.58185893	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	10	0										1							15.501	15.501	2	0.006778	10261	DP690-10	120.46	57.74			NaN	NaN	NaN	0	0	Median	75608000	0	75608000	14975	1075	13989	29465	71356;71357	71356		2	9606
VANVEYFPEESSALIEFFDRK	1	1	Unmodified	2489.2115	0.21145592	1391	Q460N5	PARP14	Poly [ADP-ribose] polymerase 14	yes	yes	0	0	1	10	0										1							22.625	22.625	3	0.043818	20453	DP690-10	37.856	15.869			0.80441	0.9698	NaN	1	0	Median	20689000	9029600	11660000	14976	1391	13990	29466	71358	71358		1	9606
VANVSLLALYK	1	0	Unmodified	1189.7071	0.70705945	972	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	12	4								1								1	19.022	19.022	2	0.00013733	13515	DP690-16	150.36	121.19			1.0198	1.1183	15.448	2	0	Median	250710000	127640000	123070000	14977	972	13991	29467;29468	71359;71360;71361;71362;71363;71364;71365;71366	71362		8	9606
VAPAEPQEAPDSTAAGGSASK	1	0	Unmodified	1939.9123	0.91231379	1387	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	4	0				1													11.585	11.585	2	2.929E-06	4106	DP690-4	131.86	120.28			0.56685	0.60541	NaN	1	0	Median	2164600	1096400	1068200	14978	1387	13992	29469	71367;71368	71367		2	9606
VAPAPAAADAEVEQTDAESK	1	0	Unmodified	1968.9276	0.9276295	192	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	11	0											1						13.962	13.962	2	1.0437E-09	7915	DP690-11	152.88	135.15			0.49576	0.60804	NaN	1	0	Median	21260000	11306000	9954100	14979	192	13993	29470	71369;71370	71369		2	9606
VAPAQPSEEGPGR	0	1	Unmodified	1293.6313	0.63132832	573	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	11	0											1						10.562	10.562	2	3.264E-05	2913	DP690-11	176.6	151.02			0.76092	0.88189	NaN	1	0	Median	174010000	94730000	79285000	14980	573	13994	29471	71371;71372;71373;71374	71371		4	9606
VAPDEHPILLTEAPLNPK	1	0	Unmodified	1953.0571	0.057127534	1408	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	0	0	12	3.99		1	1			1	1			1	1	1		9	4	1	21.631	21.631	3	0.00048348	10089	DP690-15	87.669	4.8946			0.58059	0.68126	22.369	19	0	Median	4589700000	2720400000	1869299999.9999998	14981	1408	13995	29472;29473;29474;29475;29476;29477;29478;29479;29480;29481;29482;29483;29484;29485;29486;29487;29488;29489;29490;29491;29492	71375;71376;71377;71378;71379;71380;71381;71382;71383;71384;71385;71386;71387;71388;71389;71390;71391;71392;71393;71394;71395;71396;71397;71398;71399;71400;71401;71402;71403;71404	71392		30	9606
VAPEEHPVLLTEAPLNPK	1	0	Unmodified	1953.0571	0.057127534	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	12.7	3.12		1		1		2	1		2	2	2	1	2	25	6	2	21.699	21.699	2;3	2.1087E-29	9293	DP690-6	243.3	58.959			0.58964	0.68502	16.139	40	0	Median	67725000000	41528000000	26197000000	14982	926;1023	13996	29493;29494;29495;29496;29497;29498;29499;29500;29501;29502;29503;29504;29505;29506;29507;29508;29509;29510;29511;29512;29513;29514;29515;29516;29517;29518;29519;29520;29521;29522;29523;29524;29525;29526;29527;29528;29529;29530;29531;29532;29533;29534;29535;29536;29537;29538;29539	71405;71406;71407;71408;71409;71410;71411;71412;71413;71414;71415;71416;71417;71418;71419;71420;71421;71422;71423;71424;71425;71426;71427;71428;71429;71430;71431;71432;71433;71434;71435;71436;71437;71438;71439;71440;71441;71442;71443;71444;71445;71446;71447;71448;71449;71450;71451;71452;71453;71454;71455;71456;71457;71458;71459;71460;71461;71462;71463;71464;71465;71466;71467;71468;71469;71470;71471;71472;71473;71474;71475;71476;71477;71478;71479;71480;71481;71482;71483;71484;71485;71486;71487;71488;71489;71490;71491;71492;71493;71494;71495;71496;71497;71498;71499;71500;71501;71502;71503;71504;71505;71506;71507;71508;71509;71510;71511;71512;71513;71514;71515;71516	71505		110	9606
VAQGQTGNFLFFGCR	0	1	Unmodified	1700.8093	0.80930946	2339	Q9UHB4	NDOR1	NADPH-dependent diflavin oxidoreductase 1	yes	yes	0	0	0	4	0				2													19.776	19.776	2	0.0045247	14415	DP690-4	132.25	85.52			NaN	NaN	NaN	0	0	Median	0	0	0	14983	2339	13997	29540;29541	71517;71518	71517		2	9606
VAQILKEPK	2	0	Unmodified	1024.6281	0.62808085	773	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	1	15	0															1		10.828	10.828	2	0.0013103	3362	DP690-15	158.07	101.35			0.6395	0.73194	NaN	1	0	Median	18995000	11135000	7859700	14984	773	13998	29542	71519	71519		1	9606
VAQLLER	0	1	Unmodified	827.4865	0.48650199	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									3								12.684	12.684	2	0.049446	5374	DP690-9	134.44	8.3915			NaN	NaN	NaN	0	0	Median	56528000	56528000	0	14985	1319	13999	29543;29544;29545	71520;71521;71522;71523	71522		4	9606
VAQPTITDNK	1	0	Unmodified	1085.5717	0.57168818	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	6	4		1								1							10.943	10.943	2	0.0026963	3053	DP690-2	97.635	57.367			0.64825	0.70515	0.44115	2	0	Median	230370000	155080000	75284000	14986	549	14000	29546;29547	71524;71525;71526;71527;71528	71526		5	9606
VAQPTITDNKDGTVTVR	1	1	Unmodified	1813.9534	0.95339074	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	9.29	3.17		2							3	3	4	1	1				13.277	13.277	2;3	6.930699999999999E-23	6446	DP690-10	249.41	196.91			0.7787	0.91239	14.056	11	0	Median	1733499999.9999998	958880000	774580000	14987	549	14001	29548;29549;29550;29551;29552;29553;29554;29555;29556;29557;29558;29559;29560;29561	71529;71530;71531;71532;71533;71534;71535;71536;71537;71538;71539;71540;71541;71542;71543;71544;71545;71546;71547;71548;71549;71550;71551;71552;71553;71554;71555;71556;71557;71558	71533		30	9606
VAQVAEITYGQK	1	0	Unmodified	1305.6929	0.69286595	297	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	14	0														1			14.092	14.092	2	0.00032506	7610	DP690-14	117.71	73.503			0.76984	0.93509	NaN	1	0	Median	59082000	36456000	22626000	14988	297	14002	29562	71559;71560	71560		2	9606
VAQVLEGFITR	0	1	Unmodified	1231.6925	0.69247202	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	11	0											1						18.761	18.761	2	0.024139	14917	DP690-11	83.862	46.797			0.85868	1.024	NaN	1	0	Median	42982000	32685000	10298000	14989	83	14003	29563	71561	71561		1	9606
VAQYVVREEEMGEEEEVER	0	2	Oxidation (M)	2325.0431	0.043069966	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	1	10	0										1							14.292	14.292	3	0.042974	8491	DP690-10	43.326	25.749			0.56768	0.67613	NaN	1	0	Median	75952000	51830000	24123000	14990	1297	14004	29564	71562	71562	1980	1	9606
VAQYVVREEEMGEEEEVER	0	2	Unmodified	2309.0482	0.048155344	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	1	10	0										1							15.152	15.152	3	0.0084938	9756	DP690-10	106.57	81.666			NaN	NaN	NaN	0	0	Median	26847000	26847000	0	14991	1297	14004	29565	71563;71564	71563		2	9606
VARPLPAEEPER	0	2	Unmodified	1362.7256	0.72556306	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	1	10	0										2							10.862	10.862	3	0.001546	3461	DP690-10	112.5	77.73			NaN	NaN	NaN	0	0	Median	0	0	0	14992	591	14005	29566;29567	71565;71566	71565		2	9606
VASASAGSCDVPSPFNHRPGSHLDSHR	0	2	Unmodified	2844.311	0.3110206	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	1	11	0											4						12.313	12.313	5;6	0.00013281	5608	DP690-11	71.042	59.234			0.58115	0.7164	5.8116	4	0	Median	1842299999.9999998	1160900000	681360000	14993	1365	14006	29568;29569;29570;29571	71567;71568;71569;71570;71571;71572;71573	71572		7	9606
VASEEEEVPLVVYLK	1	0	Unmodified	1702.9029	0.9029183	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	11	0											1						20.487	20.487	2	5.0057E-07	17062	DP690-11	163.84	98.561			NaN	NaN	NaN	0	0	Median	59714000	59714000	0	14994	1653	14007	29572	71574;71575	71575		2	9606
VASEQSSQPTCTVGVWIDVGSR	0	1	Unmodified	2362.1223	0.12232334	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	13	0													1				19.042	19.042	2	3.4369E-42	14270	DP690-13	261.64	226.43			0.7435	0.91549	NaN	1	0	Median	17607000	10300000	7306400	14995	637	14008	29573	71576;71577;71578	71577		3	9606
VASGPSPGEGISPQSAQAPQAPGDNHVVPVLR	0	1	Unmodified	3118.5796	0.57957411	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														16.102	16.102	3	4.3755E-12	10155	DP690-3	142.65	131.13			0.48471	0.55742	NaN	1	0	Median	17103000	10373000	6730300	14996	1293	14009	29574	71579;71580;71581;71582;71583	71581		5	9606
VASGSTATAAAGPSCALK	1	0	Unmodified	1618.7985	0.79847001	715	P41134	ID1	DNA-binding protein inhibitor ID-1	yes	yes	0	0	0	16	0																1	12.251	12.251	2	0.07001	4993	DP690-16	85.271	44.544			NaN	NaN	NaN	0	0	Median	0	0	0	14997	715	14010	29575	71584	71584		1	9606
VASLEESEGNKQDLK	2	0	Unmodified	1645.8159	0.81589421	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	12	0												4					11.183	11.183	2;3	0.0013194	3704	DP690-12	90.689	69.722			0.81048	0.91242	NaN	1	0	Median	137200000	78857000	58341000	14998	1131	14011	29576;29577;29578;29579	71585;71586;71587;71588;71589	71585		5	9606
VASSPAPPEGPSHPR	0	1	Unmodified	1484.7372	0.73719038	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	9	0									2								10.313	10.313	3	0.0021397	2526	DP690-9	130.19	83.904			NaN	NaN	NaN	0	0	Median	0	0	0	14999	106	14012	29580;29581	71590;71591	71590		2	9606
VASSPVMVSNPATR	0	1	Oxidation (M)	1430.7188	0.71876312	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	1	0	10.5	0.5										1	1						12.937	12.937	2	0.0038597	6504	DP690-10	90.434	60.767			0.61586	0.75404	13.657	2	0	Median	92326000	60616000	31710000	15000	837	14013	29582;29583	71592;71593;71594;71595;71596	71593	1268	5	9606
VASSPVMVSNPATR	0	1	Unmodified	1414.7238	0.7238485	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	11	0											1						13.785	13.785	2	0.0012449	7533	DP690-11	95.618	77.012			0.70967	0.84645	NaN	1	0	Median	38661000	22829000	15832000	15001	837	14013	29584	71597;71598;71599	71598		3	9606
VASTENGIIFGNIVYDVSGAASDR	0	1	Unmodified	2454.2027	0.20268215	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	3	0			1														22.561	22.561	2	1.9251E-20	18113	DP690-3	180.1	149.53			NaN	NaN	NaN	0	0	Median	1740500	0	1740500	15002	877	14014	29585	71600;71601	71600		2	9606
VASTLTEEGGGGGGGGGSVAPKPPR	1	1	Unmodified	2194.0978	0.097823149	1730	Q8TF68	ZNF384	Zinc finger protein 384	yes	yes	0	0	1	12	0												1					12.468	12.468	3	7.8009E-05	5453	DP690-12	115.31	82.804			0.66095	0.85494	NaN	1	0	Median	26595000	14355000	12239000	15003	1730	14015	29586	71602	71602		1	9606
VASVLAYSFSR	0	1	Unmodified	1198.6346	0.63462279	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	6	2				1				1									17.722	17.722	2	6.920400000000001E-33	12031	DP690-4	233.57	173.09			NaN	NaN	NaN	0	0	Median	144560000	0	144560000	15004	1784	14016	29587;29588	71603;71604;71605;71606;71607	71604		5	9606
VASVSQNAIVSAAGNIAR	0	1	Unmodified	1726.9326	0.93259572	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	9.33	2.98			1						1	1	2	1					17.609	17.609	2	5.659099999999999E-50	13219	DP690-10	322.7	269.69			0.83083	0.96519	8.8857	4	0	Median	1103200000	600620000	502590000	15005	272	14017	29589;29590;29591;29592;29593;29594	71608;71609;71610;71611;71612;71613;71614;71615;71616;71617;71618;71619;71620;71621;71622;71623;71624;71625;71626	71609		19	9606
VATLNSEEESDPPTYK	1	0	Unmodified	1778.821	0.82103917	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	10	0										1							13.788	13.788	2	4.5276E-12	7686	DP690-10	241.35	219.96			0.66726	0.82363	NaN	1	0	Median	84692000	49774000	34918000	15006	1071	14018	29595	71627;71628;71629;71630	71628		4	9606
VATSSLDQTVK	1	0	Unmodified	1147.6085	0.60846762	2014	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	13	0													1				12.161	12.161	2	0.00012617	4796	DP690-13	164.68	128.29			0.87094	0.99321	NaN	1	0	Median	109440000	60783000	48657000	15007	2014	14019	29596	71631;71632;71633;71634	71634		4	9606
VATVSLPR	0	1	Unmodified	841.50215	0.50215205	28	CON__P00761			yes	yes	0	0	0	7.12	4.52	9	10	16	3	11	2	8	4	15	8	2	3	3	3	5	6	15.249	15.249	1;2	1.7514E-05	6395	DP690-16	158.36	62.564		+	NaN	NaN	NaN	0	0	Median	204510000000	204510000000	0	15008	28	14020	29597;29598;29599;29600;29601;29602;29603;29604;29605;29606;29607;29608;29609;29610;29611;29612;29613;29614;29615;29616;29617;29618;29619;29620;29621;29622;29623;29624;29625;29626;29627;29628;29629;29630;29631;29632;29633;29634;29635;29636;29637;29638;29639;29640;29641;29642;29643;29644;29645;29646;29647;29648;29649;29650;29651;29652;29653;29654;29655;29656;29657;29658;29659;29660;29661;29662;29663;29664;29665;29666;29667;29668;29669;29670;29671;29672;29673;29674;29675;29676;29677;29678;29679;29680;29681;29682;29683;29684;29685;29686;29687;29688;29689;29690;29691;29692;29693;29694;29695;29696;29697;29698;29699;29700;29701;29702;29703;29704	71635;71636;71637;71638;71639;71640;71641;71642;71643;71644;71645;71646;71647;71648;71649;71650;71651;71652;71653;71654;71655;71656;71657;71658;71659;71660;71661;71662;71663;71664;71665;71666;71667;71668;71669;71670;71671;71672;71673;71674;71675;71676;71677;71678;71679;71680;71681;71682;71683;71684;71685;71686;71687;71688;71689;71690;71691;71692;71693;71694;71695;71696;71697;71698;71699;71700;71701;71702;71703;71704;71705;71706;71707;71708;71709;71710;71711;71712;71713;71714;71715;71716;71717;71718;71719;71720;71721;71722;71723;71724;71725;71726;71727;71728;71729;71730;71731;71732;71733;71734;71735;71736;71737;71738;71739;71740;71741;71742;71743;71744;71745;71746;71747;71748;71749;71750;71751;71752;71753;71754;71755;71756;71757;71758;71759;71760;71761;71762;71763;71764;71765;71766;71767;71768;71769;71770;71771;71772;71773;71774;71775;71776;71777;71778;71779;71780;71781;71782;71783;71784;71785;71786;71787;71788;71789;71790;71791;71792;71793;71794;71795;71796;71797;71798;71799;71800;71801;71802;71803;71804;71805;71806;71807;71808;71809;71810;71811;71812;71813;71814;71815;71816;71817;71818;71819;71820;71821;71822;71823;71824	71688		190	
VATWFNQPAR	0	1	Unmodified	1188.604	0.60399136	593	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	15	0															1		15.99	15.99	2	0.0029594	10056	DP690-15	95.909	71.755			0.72704	0.83945	NaN	1	0	Median	31920000	17863000	14056000	15009	593	14021	29705	71825;71826	71826		2	9606
VAVATILEK	1	0	Unmodified	942.57498	0.57498264	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															15.66	15.66	2	0.014357	8444	DP690-2	85.161	47			0.94798	0.95737	NaN	1	0	Median	17315000	8886200	8428600	15010	2418	14022	29706	71827;71828;71829	71827		3	9606
VAVDPETVFK	1	0	Unmodified	1103.5863	0.58627561	448	Q8NHU0;Q5HYN5;Q5DJT8;P0DMV2;P0DMV1;P0DMV0;P0DMU9;P0DMU8;P0DMU7	CT45A3;CT45A1;CT45A2;CT45A9;CT45A8;CT45A7;CT45A10;CT45A5;CT45A6	Cancer/testis antigen family 45 member A3;Cancer/testis antigen family 45 member A1;Cancer/testis antigen family 45 member A2;Cancer/testis antigen family 45 member A9;Cancer/testis antigen family 45 member A8;Cancer/testis antigen family 45 member A7;Cancer/testis antigen family 45 member A10;Cancer/testis antigen family 45 member A5;Cancer/testis antigen family 45 member A6	yes	no	0	0	0	15	0															1		17.016	17.016	2	0.0033759	11363	DP690-15	93.178	59.089			0.71208	0.80568	NaN	1	0	Median	83987000	49179000	34808000	15011	448	14023	29707	71830;71831;71832;71833	71833		4	9606
VAVEEVDEEGK	1	0	Unmodified	1202.5667	0.56666238	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	12	0												1					12.401	12.401	2	0.00028798	5287	DP690-12	160.82	143			0.65388	0.76411	NaN	1	0	Median	97823000	59549000	38274000	15012	359	14024	29708	71834;71835	71834		2	9606
VAVEEVDEEGKFVR	1	1	Unmodified	1604.8046	0.80460124	359	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	11.6	0.728											4	2	1				14.449	14.449	2;3	1.6409E-09	8188	DP690-12	200.93	200.93			0.75039	0.85991	13.222	4	0	Median	1259700000	751670000	508070000	15013	359	14025	29709;29710;29711;29712;29713;29714;29715	71836;71837;71838;71839;71840;71841;71842;71843;71844;71845;71846;71847	71843		12	9606
VAVEYLDPSPEVQK	1	0	Unmodified	1572.8035	0.80353861	185	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	11	3.67						1			1					1	1		16.358	16.358	2	1.0457E-07	10607	DP690-14	195.83	195.83			0.69884	0.81935	4.331	3	0	Plateau	735980000	442660000	293320000	15014	185	14026	29716;29717;29718;29719	71848;71849;71850;71851;71852;71853;71854;71855;71856;71857;71858;71859;71860;71861	71849		14	9606
VAVGQEQAFSVNTR	0	1	Unmodified	1504.7634	0.76340513	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	8.14	3.68		1	1						1	2	1	1					14.757	14.757	2	3.5378E-19	9097	DP690-10	284.73	284.73			0.92252	1.1341	14.683	5	0	Median	670160000	345820000	324330000	15015	1270	14027	29720;29721;29722;29723;29724;29725;29726	71862;71863;71864;71865;71866;71867;71868;71869;71870;71871;71872;71873;71874;71875;71876	71862		14	9606
VAVNALAVGEPGTASKPASPIGGPTQEEK	2	0	Unmodified	2774.445	0.44503769	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	1	10	0										1							15.59	15.59	3	0.00045998	10382	DP690-10	102.73	61.201			NaN	NaN	NaN	0	0	Median	0	0	0	15016	1891	14028	29727	71877	71877		1	9606
VAVQGDVVR	0	1	Unmodified	941.52943	0.52942943	408	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	6.5	3.5			1							1							11.785	11.785	2	0.0046376	4847	DP690-10	101.25	32.831			0.82866	0.98311	10.097	2	0	Median	161790000	92815000	68978000	15017	408	14029	29728;29729	71878;71879	71878		2	9606
VAVTEGCQPSR	0	1	Unmodified	1202.5714	0.5713706	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							10.584	10.584	2	2.7167E-06	3117	DP690-10	204.79	109.05			0.74442	0.78329	NaN	1	0	Median	1109700000	608680000	501020000	15018	250	14030	29730	71880;71881;71882	71881		3	9606
VAVVAGYGDVGK	1	0	Unmodified	1133.6081	0.60807369	571	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	5	0					1												14.321	14.321	2	0.0063212	7153	DP690-5	82.261	57.123			0.88342	0.87861	NaN	1	0	Median	142910000	73254000	69660000	15019	571	14031	29731	71883;71884	71883		2	9606
VAVVNQIAR	0	1	Unmodified	968.57671	0.57671398	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							13.043	13.043	2	0.0015811	6630	DP690-10	119.56	50.642			0.7823	0.94549	NaN	1	0	Median	182950000	102900000	80054000	15020	1080	14032	29732	71885;71886	71886		2	9606
VAVVTGSTSGIGFAIAR	0	1	Unmodified	1604.8886	0.88860564	1195	Q13268	DHRS2	Dehydrogenase/reductase SDR family member 2, mitochondrial	yes	yes	0	0	0	11	4							1								1		18.348	18.348	2	9.7719E-09	12498	DP690-7	222.2	155.5			NaN	NaN	NaN	0	0	Median	33642000	33642000	0	15021	1195	14033	29733;29734	71887;71888;71889;71890	71888		4	9606
VAYVSFGPHAGK	1	0	Unmodified	1231.635	0.63495714	825	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	15	0															1		13.491	13.491	3	0.00041631	6662	DP690-15	103.08	82.051			0.88798	0.96497	NaN	1	0	Median	225360000	115950000	109420000	15022	825	14034	29735	71891;71892	71892		2	9606
VCAASLYVLGTATR	0	1	Unmodified	1480.7708	0.77079869	2328	Q9UDX5	MTFP1	Mitochondrial fission process protein 1	yes	yes	0	0	0	16	0																1	18.096	18.096	2	0.00033455	12546	DP690-16	110.08	80.31			0.70887	0.83304	NaN	1	0	Median	3828100	2440500	1387600	15023	2328	14035	29736	71893;71894;71895	71893		3	9606
VCAYGPGLK	1	0	Unmodified	963.48479	0.48478743	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	6	4		1								1							12.72	12.72	2	0.0076694	6159	DP690-10	91.906	55.721			0.96633	1.0498	19.134	2	0	Median	328690000	188380000	140310000	15024	1270	14036	29737;29738	71896;71897;71898;71899;71900;71901	71899		6	9606
VCDEPHPLLVK	1	0	Unmodified	1305.6751	0.67510739	663	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	14	0														1			12.891	12.891	3	0.0034079	5900	DP690-14	78.513	49.786			0.73268	0.87519	NaN	1	0	Median	126180000	75581000	50596000	15025	663	14037	29739	71902;71903;71904	71903		3	9606
VCEDLDTSVNLAWTSGTNCTR	0	1	Unmodified	2398.0529	0.052923146	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	14	0														1			18.908	18.908	2	8.747699999999999E-50	14183	DP690-14	299.27	289.2			0.89742	1.0832	NaN	1	0	Median	61085000	32187000	28898000	15026	744	14038	29740	71905;71906;71907;71908	71907		4	9606
VCEEIAIIPSK	1	0	Unmodified	1257.6639	0.663874	425	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	12	4								1								1	16.437	16.437	2	7.7445E-05	10263	DP690-16	128.35	75.562			0.84723	0.93103	11.925	2	0	Median	228710000	122900000	105800000	15027	425	14039	29741;29742	71909;71910;71911;71912;71913;71914	71909		6	9606
VCEEIAIIPSKK	2	0	Unmodified	1385.7588	0.75883702	425	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	1	13.3	3.77								1								2	14.094	14.094	2;3	9.8396E-05	7281	DP690-16	113.24	87.803			0.82281	0.89301	3.0751	3	0	Plateau	796310000	431970000	364340000	15028	425	14040	29743;29744;29745	71915;71916;71917;71918;71919;71920;71921;71922;71923;71924;71925	71918		11	9606
VCFLATGAGR	0	1	Unmodified	1050.528	0.52804923	2211	Q9NSP4	CENPM	Centromere protein M	yes	yes	0	0	0	8	0								1									14.947	14.947	2	0.046361	8050	DP690-8	65.465	41.697			0.68903	0.80581	NaN	1	0	Median	6592200	3451100	3141100	15029	2211	14041	29746	71926	71926		1	9606
VCIDKDSGDVAALR	1	1	Unmodified	1517.7508	0.75079153	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	1	3	0			1														13.833	13.833	3	0.020803	7107	DP690-3	83.243	51.896			NaN	NaN	NaN	0	0	Median	0	0	0	15030	708	14042	29747	71927	71927		1	9606
VCISILHAPGDDPMGYESSAER	0	1	Oxidation (M)	2419.0784	0.078409615	924	P60604	UBE2G2	Ubiquitin-conjugating enzyme E2 G2	yes	yes	0	1	0	16	0																1	16.689	16.689	3	0.012906	10772	DP690-16	54.15	42.362			NaN	NaN	NaN	0	0	Median	3348200	1310000	2038200	15031	924	14043	29748	71928;71929	71928	1417	2	9606
VCNFLASQVPFPSR	0	1	Unmodified	1620.8082	0.80824683	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	15	0															1		19.23	19.23	2	0.0058503	14284	DP690-15	111.5	61.463			NaN	NaN	NaN	0	0	Median	5994700	0	5994700	15032	1953	14044	29749	71930	71930		1	9606
VCNYGLTFTQK	1	0	Unmodified	1329.6387	0.63872189	2433	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	14.5	0.5														1	1		16.04	16.04	2	7.9109E-05	10320	DP690-14	128.6	101.91			0.81617	0.94923	0.47688	2	0	Median	188250000	113220000	75035000	15033	2433	14045	29750;29751	71931;71932;71933;71934;71935;71936;71937	71932		7	9606
VCPTTETIYNDEFYTK	1	0	Unmodified	1979.8823	0.88225921	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														17.343	17.343	2	4.0157E-18	11705	DP690-3	228.61	206.53			0.79016	0.84525	NaN	1	0	Median	23232000	13185000	10047000	15034	5	14046	29752	71938;71939;71940;71941	71938		4	9606
VCQGIGMVNR	0	1	Oxidation (M)	1148.543	0.54304736	2464	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	1	0	12	4								1								1	10.934	10.934	2	0.002904	3565	DP690-8	103.83	44.916			0.93799	1.1287	NaN	1	0	Median	16473000	15487000	986450	15035	2464	14047	29753;29754	71942;71943;71944;71945;71946	71944	2909	5	9606
VCTLAIIDPGDSDIIR	0	1	Unmodified	1756.9029	0.90293508	1002	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	16	0																1	20.246	20.246	2	3.2372E-12	14959	DP690-16	202.65	202.65			1.0142	1.1796	NaN	1	0	Median	20583000	10355000	10228000	15036	1002	14048	29755	71947;71948;71949;71950	71949		4	9606
VDALMDEINFMK	1	0	2 Oxidation (M)	1456.6578	0.65780235	43	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	2	0	1	0	1																17.357	17.357	2	0.011907	8837	DP690-1	96.113	50.112		+	NaN	NaN	NaN	0	0	Median	1541200	1541200	0	15037	43	14049	29756	71951;71952	71951	51;52	2	9606
VDATADYICK	1	0	Unmodified	1154.5278	0.52777445	873	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	7	4			1								1						13.791	13.791	2	0.011085	7005	DP690-3	106.68	67.43			NaN	NaN	NaN	0	0	Median	71559000	60272000	11287000	15038	873	14050	29757;29758	71953;71954;71955;71956	71956		4	9606
VDATEESDLAQQYGVR	0	1	Unmodified	1779.8275	0.82752153	402	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	10	3.46				1								3					16.966	16.966	2	1.0962E-32	11061	DP690-4	307.97	266.27			1.1562	1.3266	NaN	1	0	Median	20417000	8820600	11597000	15039	402	14051	29759;29760;29761;29762	71957;71958;71959;71960;71961;71962;71963	71961		7	9606
VDAVHADVYR	0	1	Unmodified	1143.5673	0.5672715	1304	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	3	0			1														11.836	11.836	3	0.062301	4476	DP690-3	57.174	28.012			NaN	NaN	NaN	0	0	Median	0	0	0	15040	1304	14052	29763	71964	71964		1	9606
VDCQAYAQTCQK	1	0	Unmodified	1470.6231	0.62314818	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	11.1	3.66			1						1		2	1	1	1		1	10.906	10.906	2	9.4098E-25	3839	DP690-11	213.8	177.48			0.90371	1.0647	21.641	5	0	Median	321650000	170640000	151020000	15041	1613	14053	29764;29765;29766;29767;29768;29769;29770;29771	71965;71966;71967;71968;71969;71970;71971;71972;71973;71974;71975;71976;71977;71978;71979;71980;71981;71982;71983	71971		19	9606
VDCTAHSDVCSAQGVR	0	1	Unmodified	1760.757	0.7570159	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	5.5	0.5					3	3											10.6	10.6	2;3	5.3262E-18	3083	DP690-5	203.88	169.11			1.7659	1.8251	4.8305	2	0	Median	357650000	121270000	236380000	15042	1675	14054	29772;29773;29774;29775;29776;29777	71984;71985;71986;71987;71988;71989;71990;71991;71992;71993;71994	71988		11	9606
VDCTQHYELCSGNQVR	0	1	Unmodified	1964.8469	0.84689354	1675	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	9	4					1								1				12.738	12.738	3	1.325E-07	5291	DP690-5	164.7	164.7			1.2791	1.4342	33.448	2	0	Median	138090000	64149000	73938000	15043	1675	14055	29778;29779	71995;71996;71997;71998;71999;72000;72001;72002	72002		8	9606
VDDDSLGEFPVTNSR	0	1	Unmodified	1649.7533	0.75329395	1789	Q92785	DPF2	Zinc finger protein ubi-d4	yes	yes	0	0	0	13	0													1				17.198	17.198	2	2.1063E-05	11807	DP690-13	140.91	111.69			0.81996	1	NaN	1	0	Median	40951000	21846000	19106000	15044	1789	14056	29780	72003;72004;72005;72006;72007	72006		5	9606
VDDLLIIEEK	1	0	Unmodified	1185.6493	0.6492698	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	7.25	3.03		1							3								18.612	18.612	2	0.00091921	11957	DP690-2	109.29	64.209			0.85879	0.97338	9.703	2	0	Median	19209000	11816000	7393300	15045	1264	14057	29781;29782;29783;29784	72008;72009;72010;72011;72012;72013;72014	72010		7	9606
VDDPQDVFKPTTSR	1	1	Unmodified	1603.7842	0.78420015	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	1	9	0									1								14.211	14.211	3	0.00027716	7442	DP690-9	113.54	73.166			0.66209	0.7679	NaN	1	0	Median	51466000	27583000	23883000	15046	295	14058	29785	72015;72016;72017;72018	72018		4	9606
VDEFNVSSPQFVGNLR	0	1	Unmodified	1806.8901	0.89006221	846	P51946	CCNH	Cyclin-H	yes	yes	0	0	0	14	0														1			19.089	19.089	2	0.0066542	14422	DP690-14	106.26	74.415			NaN	NaN	NaN	0	0	Median	20096000	0	20096000	15047	846	14059	29786	72019	72019		1	9606
VDEFPLCGHMVSDEYEQLSSEALEAAR	0	1	Oxidation (M)	3097.3645	0.36448046	601	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	0	15	0															1		21.05	21.05	3	1.5856E-07	16338	DP690-15	127.3	119.33			0.81591	0.94206	NaN	1	0	Median	10049000	5940500	4108400	15048	601	14060	29787	72020;72021;72022	72021	806	3	9606
VDEIDAAIQR	0	1	Unmodified	1128.5775	0.57750184	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								14.96	14.96	2	9.3714E-05	8455	DP690-9	148.99	114.18			0.71364	0.88813	NaN	1	0	Median	19249000	10183000	9065800	15049	2411	14061	29788	72023;72024	72023		2	9606
VDELAHFLLR	0	1	Unmodified	1211.6663	0.66625727	739	P43358	MAGEA4	Melanoma-associated antigen 4	yes	yes	0	0	0	6	0						2											18.638	18.638	2;3	0.00089052	12512	DP690-6	109.48	60.682			0.97898	1.106	5.6391	2	0	Median	44204000	23270000	20934000	15050	739	14062	29789;29790	72025;72026;72027;72028;72029	72029		5	9606
VDENFDCVEADDVEGK	1	0	Unmodified	1839.7469	0.74688795	119	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	5	0					1												16.237	16.237	2	2.6825E-22	9526	DP690-5	254.89	246.4			1.131	1.1291	NaN	1	0	Median	35664000	19366000	16298000	15051	119	14063	29791	72030;72031;72032;72033	72031		4	9606
VDFEQLTENLGQLER	0	1	Unmodified	1789.8846	0.88464248	2511	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	0	0	3	0			1														22.035	22.035	2	1.3423E-05	17574	DP690-3	130.56	94.244			0.81321	0.89085	NaN	1	0	Median	3449200	1669600	1779600	15052	2511	14064	29792	72034;72035	72034		2	9606
VDFPSSVR	0	1	Unmodified	905.46068	0.46068117	711	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	14	0														1			14.297	14.297	2	0.0015889	7948	DP690-14	137.18	87.821			NaN	NaN	NaN	0	0	Median	29772000	0	29772000	15053	711	14065	29793	72036;72037	72036		2	9606
VDGAEWGVDLPSVEAQLGSHR	0	1	Unmodified	2221.0764	0.076359426	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	10	0.816									1	1	1						19.965	19.965	3	4.7456E-16	16497	DP690-11	177.41	162.56			0.73887	0.86271	0.15762	2	0	Median	276330000	183600000	92734000	15054	1319	14066	29794;29795;29796	72038;72039;72040;72041;72042;72043;72044;72045;72046	72042		9	9606
VDGLSDDHKIETQR	1	1	Unmodified	1611.7853	0.78526278	2160	Q9HB90;Q9NQL2	RRAGC;RRAGD	Ras-related GTP-binding protein C;Ras-related GTP-binding protein D	yes	no	0	0	1	13	0													1				10.91	10.91	3	0.048033	3313	DP690-13	86.738	50.454			NaN	NaN	NaN	0	0	Median	14224000	14224000	0	15055	2160	14067	29797	72047	72047		1	9606
VDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK	2	0	Unmodified	3808.0042	0.0042356115	589	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	1	13	0													1				30.184	30.184	4	1.5365E-05	25524	DP690-13	81.532	53.985			NaN	NaN	NaN	0	0	Median	238340	238340	0	15056	589	14068	29798	72048	72048		1	9606
VDIDAPDVDVHGPDWHLK	1	0	Unmodified	2026.9749	0.97485447	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	10	1									1		1						17.099	17.099	3;4	0.00087109	11214	DP690-9	83.253	68.949			0.58295	0.69209	NaN	1	0	Median	125010000	106730000	18274000	15057	1145	14069	29799;29800	72049;72050;72051;72052;72053;72054	72051		6	9606
VDIDAPDVEVHDPDWHLK	1	0	Unmodified	2098.996	0.99598384	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								17.081	17.081	4	0.0038509	11198	DP690-9	64.588	49.193			0.70716	0.86261	NaN	1	0	Median	31249000	16584000	14665000	15058	1145	14070	29801	72055;72056;72057	72055		3	9606
VDIDAPDVSIEGPDAK	1	0	Unmodified	1639.7941	0.79409613	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								17.305	17.305	2	4.9847E-06	11536	DP690-9	134.18	118.04			0.61886	0.79325	NaN	1	0	Median	15100000	9543800	5556200	15059	1145	14071	29802	72058;72059;72060;72061	72059		4	9606
VDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLR	1	1	Unmodified	3986.8181	0.81814522	1967	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	yes	yes	0	0	1	16	0																1	21.93	21.93	3	2.0707E-13	16832	DP690-16	122.68	107.52			0.52739	0.61779	NaN	1	0	Median	3389800	2245600	1144200	15060	1967	14072	29803	72062;72063;72064;72065;72066;72067;72068	72065		7	9606
VDIDTPDIDIHGPEGK	1	0	Unmodified	1719.8315	0.83154427	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									2								16.513	16.513	3	0.00097051	10522	DP690-9	117	77.571			NaN	NaN	NaN	0	0	Median	27189000	17252000	9936800	15061	1145	14073	29804;29805	72069;72070	72070		2	9606
VDIDVPDVDVQGPDWHLK	1	0	Unmodified	2046.0058	0.0058202445	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	9	0									1								19.492	19.492	3	3.2887E-10	14172	DP690-9	154.47	128.88			0.37656	0.47138	NaN	1	0	Median	21377000	14851000	6525500	15062	1145	14074	29806	72071;72072;72073	72071		3	9606
VDIDVPDVNIEGPDAK	1	0	Unmodified	1694.8363	0.8362953	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	5.5	3.5		1							1								18.797	18.797	2	2.8566E-08	13500	DP690-9	178.32	12.627			0.62661	0.72461	NaN	1	0	Median	69192000	42884000	26309000	15063	1145	14075	29807;29808	72074;72075;72076	72076		3	9606
VDIDVPDVNIEGPEGK	1	0	Unmodified	1694.8363	0.8362953	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	9	0									1								18.758	18.758	2	4.5155E-07	13260	DP690-9	162.31	2.8101			0.62661	0.72461	NaN	1	0	Median	68402000	42094000	26309000	15064	1145	14076	29809	72077;72078	72077		2	9606
VDIDVPDVNLEAPEGK	1	0	Unmodified	1708.8519	0.85194536	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								18.989	18.989	2	2.6195E-06	13609	DP690-9	139.89	113.23			0.59682	0.7199	NaN	1	0	Median	36836000	21679000	15157000	15065	1145	14077	29810	72079;72080;72081	72079		3	9606
VDIDVPDVNVQGPDWHLK	1	0	Unmodified	2045.0218	0.02180466	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								19.275	19.275	3	3.7295E-07	13881	DP690-9	140.68	119.19			0.71818	0.89881	NaN	1	0	Median	21447000	12165000	9281500	15066	1145	14078	29811	72082;72083;72084;72085	72082		4	9606
VDIEAPDVSLEGPEGK	1	0	Unmodified	1653.8097	0.8097462	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							17.785	17.785	2	5.8028E-09	12106	DP690-9	187.78	144.98			0.66966	0.8038	13.236	2	0	Median	248730000	148290000	100440000	15067	1145	14079	29812;29813	72086;72087;72088;72089;72090;72091;72092;72093;72094	72092		9	9606
VDIEGPDVNIEGPEGK	1	0	Unmodified	1666.805	0.80499517	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	9.67	0.471									1	2							17.005	17.005	2	2.9424E-17	11056	DP690-9	203.88	151.19			0.67741	0.76778	NaN	1	0	Median	245430000	209550000	35876000	15068	1145	14080	29814;29815;29816	72095;72096;72097;72098;72099;72100;72101;72102	72102		8	9606
VDIETPNLEGTLTGPR	0	1	Unmodified	1710.8788	0.87882882	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10.3	0.881									1	4	1	1					18.658	18.658	2	3.0516E-22	13161	DP690-9	234.79	180.3			0.60705	0.72768	11.761	2	0	Median	57989000	35431000	22558000	15069	1145	14081	29817;29818;29819;29820;29821;29822;29823	72103;72104;72105;72106;72107;72108;72109;72110;72111;72112	72110		10	9606
VDIGDTIIYLVH	0	0	Unmodified	1356.7289	0.7289171	2305	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	11	0											1						23.237	23.237	2	0.00020217	20849	DP690-11	151.04	104.65			NaN	NaN	NaN	0	0	Median	0	0	0	15070	2305	14082	29824	72113	72113		1	9606
VDIIPGFEFDR	0	1	Unmodified	1306.6558	0.65575216	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	4	0				1													21.063	21.063	2	0.0068193	15939	DP690-4	110.53	50.415			NaN	NaN	NaN	0	0	Median	4029400	0	4029400	15071	2116	14083	29825	72114;72115;72116;72117;72118	72117		5	9606
VDILDPALLR	0	1	Unmodified	1123.6601	0.66010926	519	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	5	0					1												20.298	20.298	2	0.0059322	14688	DP690-5	89.355	39.314			1.0727	1.1204	NaN	1	0	Median	43295000	20492000	22803000	15072	519	14084	29826	72119;72120;72121;72122	72119		4	9606
VDINAPDVDVHGPDWHLK	1	0	Unmodified	2025.9908	0.99083888	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								16.816	16.816	4	0.0041885	10862	DP690-9	63.374	53.304			0.57028	0.71935	NaN	1	0	Median	19107000	11993000	7113200	15073	1145	14085	29827	72123;72124	72123		2	9606
VDINAPDVDVQGPDWHLK	1	0	Unmodified	2016.9905	0.99050453	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	9	0									1								18.075	18.075	3	5.7113E-05	12478	DP690-9	137.52	99.897			NaN	NaN	NaN	0	0	Median	22623000	22623000	0	15074	1145	14086	29828	72125;72126;72127	72125		3	9606
VDINAPDVDVR	0	1	Unmodified	1211.6146	0.61461563	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								15.626	15.626	2	0.0017977	9325	DP690-9	99.788	46.851			0.67301	0.81394	NaN	1	0	Median	31593000	16645000	14948000	15075	1145	14087	29829	72128;72129	72128		2	9606
VDINAPDVEVHGPDWHLK	1	0	Unmodified	2040.0065	0.0064889465	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							16.792	16.792	4	0.0007069	10877	DP690-9	77.795	64.36			0.67373	0.81576	3.3176	2	0	Median	268320000	150660000	117670000	15076	1145	14088	29830;29831	72130;72131;72132;72133;72134	72134		5	9606
VDINAPDVEVQGK	1	0	Unmodified	1382.7042	0.70415892	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.67	0.471									1	2							15.181	15.181	2	5.7208E-05	8657	DP690-9	151.55	113.85			0.58191	0.70684	NaN	1	0	Median	77022000	64753000	12269000	15077	1145	14089	29832;29833;29834	72135;72136;72137;72138;72139;72140;72141	72138		7	9606
VDINAPDVGVQGPDWHLK	1	0	Unmodified	1958.985	0.98502522	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								17.816	17.816	3	0.00059365	12190	DP690-9	85.046	85.046			0.75083	0.91192	NaN	1	0	Median	33297000	18088000	15209000	15078	1145	14090	29835	72142;72143;72144	72142		3	9606
VDINCEDMEDGTCK	1	0	Oxidation (M)	1700.6328	0.63278616	1270	Q14315	FLNC	Filamin-C	yes	yes	0	1	0	2	0		1															12.26	12.26	2	0.00013026	4443	DP690-2	146.5	140.5			1.1455	1.1339	NaN	1	0	Median	2953300	1571400	1381900	15079	1270	14091	29836	72145;72146;72147;72148	72145	1950	4	9606
VDINTEDLEDGTCR	0	1	Unmodified	1635.7046	0.7046292	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	7	3.56		1							1	1							15.869	15.869	2	5.5586E-09	10852	DP690-10	196.44	176.31			0.89344	1.1	2.4242	2	0	Median	189420000	95448000	93971000	15080	549	14092	29837;29838;29839	72149;72150;72151;72152;72153;72154;72155	72151		7	9606
VDIPSLIQTIR	0	1	Unmodified	1253.7343	0.73433683	1670	Q8NAT1	POMGNT2	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2	yes	yes	0	0	0	12	0												1					21.11	21.11	2	0.00028973	17214	DP690-12	120.27	91.576			0.78601	0.94686	NaN	1	0	Median	17656000	10232000	7424500	15081	1670	14093	29840	72156;72157;72158;72159	72159		4	9606
VDIQTEDLEDGTCK	1	0	Unmodified	1621.7141	0.71413125	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	8.67	3.04		1							1	3	1						15.039	15.039	2	5.672700000000001E-35	9593	DP690-10	240.85	197.43			1.0051	0.99705	NaN	1	0	Median	139510000	137630000	1885100	15082	250	14094	29841;29842;29843;29844;29845;29846	72160;72161;72162;72163;72164;72165;72166;72167;72168;72169;72170;72171	72161		12	9606
VDISAPDVDVHGPDWHLK	1	0	Unmodified	1998.9799	0.97993984	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							17.028	17.028	4	0.012937	11166	DP690-9	79.027	54.489			NaN	NaN	NaN	0	0	Median	127570000	0	127570000	15083	1145	14095	29847;29848	72172;72173	72173		2	9606
VDKAAAAAAALQAK	2	0	Unmodified	1297.7354	0.73539946	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	13	0													1				12.549	12.549	3	0.047483	5334	DP690-13	50.108	36.379			0.91452	1.0395	NaN	1	0	Median	24923000	11612000	13312000	15084	681	14096	29849	72174	72174		1	9606
VDKLDASESLR	1	1	Unmodified	1231.6408	0.64083038	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	2	0		1															12.213	12.213	3	0.0027354	4446	DP690-2	84.687	65.877			1.4542	1.4315	NaN	1	0	Median	9643800	4176100	5467800	15085	1075	14097	29850	72175	72175		1	9606
VDLEGEREVSYGEGK	1	1	Unmodified	1665.7846	0.78459408	945	P61225	RAP2B	Ras-related protein Rap-2b	yes	yes	0	0	1	16	0																1	13.58	13.58	3	0.017269	6681	DP690-16	57.53	57.53			0.72948	0.7915	NaN	1	0	Median	50964000	29475000	21488000	15086	945	14098	29851	72176	72176		1	9606
VDLGGFAGLFDLK	1	0	Unmodified	1350.7184	0.71835242	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	5	3.46			3								1						24.006	24.006	2	0.00020281	19656	DP690-3	118.9	77.478			0.90928	0.95481	33.63	3	0	Median	61495000	32019000	29475000	15087	559	14099	29852;29853;29854;29855	72177;72178;72179;72180;72181	72178		5	9606
VDLGSEVYR	0	1	Unmodified	1036.5189	0.51892433	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	0	10	4						1								1			15.037	15.037	2	0.00025728	8870	DP690-14	161.9	105.35			0.68749	0.76164	29.201	2	0	Median	538440000	279600000	258840000	15088	820	14100	29856;29857	72182;72183;72184;72185;72186;72187	72183		6	9606
VDLLNQEIEFLK	1	0	Unmodified	1459.7922	0.79224564	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	8.44	4.58	1	1	1	1	1	1	1	1	1	2		1	1	1	1	1	21.714	21.714	2	1.8636E-11	15480	DP690-8	212.28	145.71		+	0.56987	0.66633	18.695	2	0	Median	133260000	128100000	5163900	15089	44	14101	29858;29859;29860;29861;29862;29863;29864;29865;29866;29867;29868;29869;29870;29871;29872;29873	72188;72189;72190;72191;72192;72193;72194;72195;72196;72197;72198;72199;72200;72201;72202;72203;72204;72205;72206;72207;72208;72209;72210;72211;72212;72213;72214;72215;72216;72217	72215		30	9606
VDLPLAVLSK	1	0	Unmodified	1053.6434	0.64339656	2130	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	0	8	0								1									19.718	19.718	2	0.010011	13360	DP690-8	83.647	66.551			0.83123	0.95917	NaN	1	0	Median	5657000	3047000	2610000	15090	2130	14102	29874	72218;72219	72218		2	9606
VDMTFEEEAQLLQLK	1	0	Oxidation (M)	1808.8866	0.88661631	1271	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	1	0	13	0													1				20.951	20.951	2	4.1993E-05	16699	DP690-13	159.09	133.19			0.90079	1.0432	NaN	1	0	Median	42822000	25185000	17637000	15091	1271	14103	29875	72220;72221	72220	1954	2	9606
VDNAYWLWTFQGR	0	1	Unmodified	1654.7892	0.78922595	902	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	11	0											1						21.881	21.881	2	0.0037134	19089	DP690-11	158.3	114			NaN	NaN	NaN	0	0	Median	0	0	0	15092	902	14104	29876	72222	72222		1	9606
VDNDENEHQLSLR	0	1	Unmodified	1567.7227	0.72266253	397	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	13.8	3.16						1		1						2	4	4	12.241	12.241	2;3	1.1158E-31	4863	DP690-16	331.48	266.33			0.84815	0.92864	8.1056	10	0	Median	4152799999.9999995	2210100000	1942799999.9999998	15093	397	14105	29877;29878;29879;29880;29881;29882;29883;29884;29885;29886;29887;29888	72223;72224;72225;72226;72227;72228;72229;72230;72231;72232;72233;72234;72235;72236;72237;72238;72239;72240;72241;72242;72243;72244;72245;72246;72247;72248;72249;72250;72251;72252	72241		29	9606
VDNSSLTGESEPQTR	0	1	Unmodified	1618.7435	0.74345755	379	P05023;P13637;P50993;P20648	ATP1A1;ATP1A3;ATP1A2;ATP4A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Potassium-transporting ATPase alpha chain 1	yes	no	0	0	0	8.8	2.99			1						1	1	2						12.309	12.309	2	1.8686E-14	5504	DP690-11	219.74	180.99			1.7262	2.0935	17.284	4	0	Median	238820000	118510000	120310000	15094	379	14106	29889;29890;29891;29892;29893	72253;72254;72255;72256;72257;72258;72259;72260;72261;72262;72263;72264;72265	72256		13	9606
VDPEIQNVK	1	0	Unmodified	1040.5502	0.55022446	44;49	P35908;CON__P35908v2;CON__P35908;CON__Q3TTY5	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	1	0	1																12.432	12.432	2	3.2955E-06	4317	DP690-1	164.72	86.983		+	NaN	NaN	NaN	0	0	Median	41648000	41648000	0	15095	44;49	14107	29894	72266;72267	72267		2	9606
VDPLFTELLNGIR	0	1	Unmodified	1485.8191	0.81912909	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										2							23.75	23.75	2	2.509E-08	21635	DP690-10	175.65	102.91			NaN	NaN	NaN	0	0	Median	32126000	32126000	0	15096	1782	14108	29895;29896	72268;72269;72270	72268		3	9606
VDQETLTEMVKPSIDYVR	1	1	Unmodified	2122.0616	0.061620564	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	1	13	0													1				18.703	18.703	3	0.047591	13856	DP690-13	44.662	26.611			0.99654	1.2193	NaN	1	0	Median	29297000	13955000	15342000	15097	2208	14109	29897	72271	72271		1	9606
VDQETLTEMVKPSIDYVR	1	1	Oxidation (M)	2138.0565	0.056535186	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	1	1	5	0					3												16.624	16.624	2;3	0.00064409	10029	DP690-5	120.9	88.038			NaN	NaN	NaN	0	0	Median	172990000	0	172990000	15098	2208	14109	29898;29899;29900	72272;72273;72274;72275	72273	2684	4	9606
VDQIQEIVTGNPTVIK	1	0	Unmodified	1752.9622	0.96216452	766	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	6	4		1								1							18.579	18.579	2	6.8183E-06	14703	DP690-10	129.76	129.76			0.96319	1.0692	7.9858	2	0	Median	92295000	49470000	42825000	15099	766	14110	29901;29902	72276;72277;72278;72279;72280	72277		5	9606
VDQMEGGAAGPSASVR	0	1	Oxidation (M)	1546.7046	0.70456962	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	1	0	10	0.816									1	1	1						10.805	10.805	2	5.3605E-17	3028	DP690-9	214.48	168.57			0.72898	0.87068	14.574	3	0	Median	107410000	61182000	46233000	15100	295	14111	29903;29904;29905	72281;72282;72283;72284;72285;72286;72287;72288;72289;72290;72291;72292;72293	72290	307	13	9606
VDQMEGGAAGPSASVR	0	1	Unmodified	1530.7097	0.709655	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	10	1									1		1						12.496	12.496	2	1.1409E-08	5714	DP690-11	179.67	155.2			0.71978	0.87947	9.0889	2	0	Median	41936000	23761000	18175000	15101	295	14111	29906;29907	72294;72295;72296;72297;72298;72299;72300	72294		7	9606
VDQSAVGFEYQGK	1	0	Unmodified	1426.6729	0.67285879	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	7.5	3.5				1							1						14.874	14.874	2	1.5083E-08	9188	DP690-11	208.15	168.53			0.96794	1.0408	17.681	2	0	Median	478980000	256290000	222690000	15102	1267	14112	29908;29909	72301;72302;72303;72304	72301		4	9606
VDQSILTGESVSVIK	1	0	Unmodified	1573.8563	0.85630246	506	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	0	0	10.5	0.5										1	1						18.05	18.05	2	0.00028005	13804	DP690-11	143.55	92.271			NaN	NaN	NaN	0	0	Median	55109000	44196000	10913000	15103	506	14113	29910;29911	72305;72306;72307;72308;72309	72307		5	9606
VDREQLVQK	1	1	Acetyl (Protein N-term)	1155.6248	0.62478638	960	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	1	0	1	15	0															1		13.176	13.176	2	0.00041095	6284	DP690-15	118.5	76.619			0.82018	0.93773	NaN	1	0	Median	39043000	22716000	16326000	15104	960	14114	29912	72310;72311;72312	72311		3	9606
VDSAATSGYEIGNPPDYR	0	1	Unmodified	1910.8646	0.86463532	577	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	yes	yes	0	0	0	8	0								1									15.961	15.961	2	0.00027303	9194	DP690-8	121.28	98.054			0.67694	0.82459	NaN	1	0	Median	2492300	1537300	955040	15105	577	14115	29913	72313;72314;72315;72316	72315		4	9606
VDSLIPWIK	1	0	Unmodified	1069.6172	0.61718181	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9.5	0.5									1	1							21.006	21.006	2	0.00078756	18092	DP690-10	133.6	93.533			0.84165	1.0237	NaN	1	0	Median	18721000	12278000	6443400	15106	2411	14116	29914;29915	72317;72318;72319	72317		3	9606
VDSLLHGTFSAK	1	0	Unmodified	1273.6667	0.6666512	2358	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	4	0				1													14.536	14.536	2	0.073822	8098	DP690-4	82.417	38.975			NaN	NaN	NaN	0	0	Median	4794000	0	4794000	15107	2358	14117	29916	72320	72320		1	9606
VDSTTCLFPVEEK	1	0	Unmodified	1523.7178	0.71776007	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	4	0				1													17.334	17.334	2	0.001086	11734	DP690-4	102.05	77.771			0.46087	0.50477	NaN	1	0	Median	12810000	9283200	3527200	15108	1122	14118	29917	72321	72321		1	9606
VDTNAPDLSLEGPEGK	1	0	Unmodified	1640.7893	0.78934511	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.75	0.433									1	3							16.228	16.228	2	1.7193E-24	11321	DP690-10	241.35	170.94			0.65563	0.79488	NaN	1	0	Median	205940000	132820000	73114000	15109	1145	14119	29918;29919;29920;29921	72322;72323;72324;72325;72326;72327	72325		6	9606
VDVASVIVTK	1	0	Unmodified	1029.607	0.60701105	934	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	13	0													1				16.235	16.235	2	0.012079	10521	DP690-13	80.755	49.333			0.85213	0.98913	NaN	1	0	Median	35530000	18185000	17346000	15110	934	14120	29922	72328;72329	72329		2	9606
VDVAVNCAGIAVASK	1	0	Unmodified	1472.7657	0.76571331	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	11	4							1								1		15.916	15.916	2	7.8737E-06	9954	DP690-15	174.39	142.64			0.85614	0.96966	0.27337	2	0	Median	48855000	24751000	24104000	15111	1953	14121	29923;29924	72330;72331;72332;72333;72334;72335;72336;72337	72331		8	9606
VDVDVPDVNIEGPDAK	1	0	Unmodified	1680.8206	0.82064524	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	9	0									1								17.903	17.903	2	3.778E-06	12224	DP690-9	137.09	92.453			0.73726	0.85824	NaN	1	0	Median	62058000	36626000	25432000	15112	1145	14122	29925	72338;72339;72340;72341	72339		4	9606
VDVEALENSAGATYIR	0	1	Unmodified	1706.8475	0.84752869	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11.2	0.433											3	1					18.741	18.741	2	5.3316E-20	14955	DP690-11	210.44	143.24			1.259	1.5085	NaN	1	0	Median	142190000	128570000	13620000	15113	288	14123	29926;29927;29928;29929	72342;72343;72344;72345;72346;72347	72343		6	9606
VDVECPDVNIEGPEGK	1	0	Unmodified	1755.7985	0.79852959	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							16.281	16.281	2	4.1543E-08	11372	DP690-10	177.83	162.63			0.68023	0.84337	22.736	2	0	Median	113430000	67289000	46144000	15114	1145	14124	29930;29931	72348;72349;72350;72351	72348		4	9606
VDVEGPDVNIEGPEGK	1	0	Unmodified	1652.7893	0.78934511	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							16.154	16.154	2	1.8941E-07	10039	DP690-9	169.09	96.846			0.71667	0.88418	NaN	1	0	Median	124920000	85995000	38922000	15115	1145	14125	29932;29933	72352;72353;72354;72355	72355		4	9606
VDVEVPDVSLEGPEGK	1	0	Unmodified	1667.8254	0.82539626	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	8.8	3.54		1							1	1	1	1					18.464	18.464	2	1.2755E-17	14488	DP690-10	224.25	224.25			0.67362	0.78319	6.8531	5	0	Median	904390000	538820000	365570000	15116	1145	14126	29934;29935;29936;29937;29938	72356;72357;72358;72359;72360;72361;72362;72363;72364;72365;72366;72367;72368	72358		13	9606
VDVFREDLCTK	1	1	Unmodified	1380.6708	0.6707503	1124	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	1	7	0							1										14.89	14.89	3	0.003708	8139	DP690-7	90.913	71.132			0.49206	0.51862	NaN	1	0	Median	174570000	123530000	51048000	15117	1124	14127	29939	72369;72370;72371;72372	72371		4	9606
VDVGKDQEFTVK	2	0	Unmodified	1363.6983	0.69834526	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	9.69	3.56		2							2	2	3	2	1	1			13.183	13.183	2;3	4.6175E-07	6811	DP690-10	187.31	99.253			0.85726	0.96464	9.6308	11	0	Median	7876899999.999999	4343700000	3533199999.9999995	15118	549	14128	29940;29941;29942;29943;29944;29945;29946;29947;29948;29949;29950;29951;29952	72373;72374;72375;72376;72377;72378;72379;72380;72381;72382;72383;72384;72385;72386;72387;72388;72389;72390;72391;72392;72393;72394;72395;72396;72397;72398;72399;72400;72401;72402;72403;72404;72405;72406;72407;72408;72409;72410;72411	72380		39	9606
VDVNAPDVQAPDWHLK	1	0	Unmodified	1802.8951	0.89514758	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							16.996	16.996	3	0.00066565	11161	DP690-9	87.99	71.003			0.57619	0.68707	NaN	1	0	Median	161700000	145730000	15968000	15119	1145	14129	29953;29954	72412;72413;72414;72415	72414		4	9606
VDVSAPDVEAHGPEWNLK	1	0	Unmodified	1961.9483	0.94830537	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10	0										1							16.742	16.742	3	0.00046707	12088	DP690-10	138.81	106.1			NaN	NaN	NaN	0	0	Median	140660000	140660000	0	15120	1145	14130	29955	72416;72417	72417		2	9606
VDVSAPDVEMQGPDWNLK	1	0	Oxidation (M)	2014.9306	0.93060639	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	0	9.5	0.5									1	1							17.953	17.953	2	0.00059649	12352	DP690-9	106.54	85.148			0.70449	0.88388	6.6657	2	0	Median	68004000	39303000	28701000	15121	1145	14131	29956;29957	72418;72419;72420	72419	1796	3	9606
VDVSAPDVEMQGPDWNLK	1	0	Unmodified	1998.9357	0.93569177	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10	0										1							19.347	19.347	2	0.0030663	15721	DP690-10	75.483	53.934			NaN	NaN	NaN	0	0	Median	39695000	23740000	15955000	15122	1145	14131	29958	72421;72422;72423	72422		3	9606
VDYIVEYDYDAVHDDELTIR	0	1	Acetyl (Protein N-term)	2484.1333	0.13326518	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	1	0	0	11.5	0.5											1	1					24.246	24.246	2	0.0010178	20763	DP690-12	119.32	88.488			NaN	NaN	NaN	0	0	Median	0	0	0	15123	2501	14132	29959;29960	72424;72425	72425		2	9606
VEAAEIVEGEDSAYSVR	0	1	Unmodified	1822.8585	0.85848731	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	8.14	3.68		1	1						1	2	1	1					17.197	17.197	2	6.1618E-33	12661	DP690-10	305.11	268.67			0.97562	1.1605	10.169	5	0	Median	689960000	350240000	339720000	15124	1270	14133	29961;29962;29963;29964;29965;29966;29967	72426;72427;72428;72429;72430;72431;72432;72433;72434;72435;72436;72437;72438;72439;72440;72441;72442;72443	72426		18	9606
VEADVSLPSMQGDLK	1	0	Oxidation (M)	1603.7763	0.77633758	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	1	0	9.5	0.5									1	1							15.385	15.385	2	0.00020062	10036	DP690-10	121.68	93.448			0.75555	0.94065	11.196	2	0	Median	72398000	42118000	30280000	15125	1602	14134	29968;29969	72444;72445;72446;72447;72448;72449;72450;72451;72452	72444	2262	9	9606
VEADVSLSSMQGDLK	1	0	Oxidation (M)	1593.7556	0.75560214	1602	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	1	0	9	0									1								14.655	14.655	2	0.0054169	8077	DP690-9	107.09	52.484			NaN	NaN	NaN	0	0	Median	3696800	3696800	0	15126	1602	14135	29970	72453;72454	72453	2263	2	9606
VEAEGLAALHSLTACLSR	0	1	Unmodified	1896.9727	0.97274598	1931	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	3	0			1														19.984	19.984	3	0.00070135	15118	DP690-3	82.482	82.482			1.7994	2.0488	NaN	1	0	Median	12208000	3890300	8317700	15127	1931	14136	29971	72455	72455		1	9606
VEAFQTTISK	1	0	Unmodified	1122.5921	0.59208927	2384	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	7	0							1										14.053	14.053	2	0.0030183	7237	DP690-7	95.523	75.737			0.78594	0.83817	NaN	1	0	Median	89174000	54730000	34444000	15128	2384	14137	29972	72456;72457	72456		2	9606
VEAKPEVQSQPPR	1	1	Unmodified	1463.7732	0.77324153	2404	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	1	4	0				1													10.292	10.292	3	8.1145E-05	2611	DP690-4	162.31	162.31			0.6426	0.7329	NaN	1	0	Median	14833000	8501100	6332000	15129	2404	14138	29973	72458;72459;72460	72458		3	9606
VEAQHILASAPTDR	0	1	Unmodified	1506.7791	0.77905519	1407	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	0	0	7	0							1										13.075	13.075	3	0.00022438	5968	DP690-7	105.58	85.486			1.2839	1.4056	NaN	1	0	Median	65465000	29035000	36430000	15130	1407	14139	29974	72461;72462;72463;72464;72465;72466	72462		6	9606
VEAVNMAEGIIHDTETK	1	0	Oxidation (M)	1871.8935	0.8934926	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	0	4	0				1													16.187	16.187	3	0.0010132	9864	DP690-4	112.67	86.593			NaN	NaN	NaN	0	0	Median	13167000	0	13167000	15131	695	14140	29975	72467;72468	72467	1009	2	9606
VEDMAELTCLNEASVLHNLK	1	0	Oxidation (M)	2301.0981	0.098082425	668;669	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	1	0	6	4		1								1							18.34	18.34	3	7.8138E-18	11677	DP690-2	201.04	185.79			1.1116	1.2422	25.129	2	0	Median	186410000	88838000	97568000	15132	668;669	14141	29976;29977	72469;72470;72471;72472;72473	72471	971	4	9606
VEDMAELTCLNEASVLHNLK	1	0	Unmodified	2285.1032	0.1031678	668;669	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	2	0		1															19.821	19.821	3	0.00061169	13337	DP690-2	82.01	82.01			0.90409	0.89741	NaN	1	0	Median	3253900	1776600	1477300	15133	668;669	14141	29978	72474	72474		1	9606
VEDVSAVEIVGGATR	0	1	Unmodified	1500.7784	0.77838649	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														17.157	17.157	2	1.8615E-15	11492	DP690-3	244	148.23			1.0687	1.163	NaN	1	0	Median	60914000	29693000	31222000	15134	1778	14142	29979	72475;72476;72477;72478	72477		4	9606
VEDYQLPDAK	1	0	Unmodified	1176.5663	0.56626845	2371	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	yes	yes	0	0	0	2	0		1															14.299	14.299	2	0.0011627	6882	DP690-2	107.69	64.61			0.70169	0.69974	NaN	1	0	Median	3820900	1644200	2176700	15135	2371	14143	29980	72479;72480	72480		2	9606
VEEAEPEEFVVEK	1	0	Unmodified	1532.7246	0.72461959	1189	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	13	3.56								1							1	1	16.17	16.17	2	3.7776E-09	10068	DP690-16	247.96	143.53			0.75312	0.82586	2.6173	3	0	Plateau	379370000	216220000	163150000	15136	1189	14144	29981;29982;29983	72481;72482;72483;72484;72485;72486;72487	72486		7	9606
VEECALGQDLCR	0	1	Unmodified	1448.6388	0.63879824	1105	Q03405	PLAUR	Urokinase plasminogen activator surface receptor	yes	yes	0	0	0	16	0																1	14.95	14.95	2	0.00045349	8526	DP690-16	113.47	85.459			1.5158	1.7769	NaN	1	0	Median	4940100	2350900	2589100	15137	1105	14145	29984	72488;72489	72489		2	9606
VEEDVASDLVMK	1	0	Oxidation (M)	1349.6384	0.63844712	2267	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	1	0	2	0		1															15.254	15.254	2	0.0061378	8043	DP690-2	106.2	32.312			NaN	NaN	NaN	0	0	Median	2149500	0	2149500	15138	2267	14146	29985	72490	72490	2721	1	9606
VEEEEERCQHLQAEK	1	1	Unmodified	1912.8585	0.85850408	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		1															10.375	10.375	4	0.0087807	2381	DP690-2	62.081	45.337			1.1065	1.0892	NaN	1	0	Median	45553000	21776000	23777000	15139	668	14147	29986	72491	72491		1	9606
VEEIIPAAR	0	1	Unmodified	996.5604	0.56039521	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															14.202	14.202	2	0.0033709	6756	DP690-2	106.36	49.179			0.92377	0.96373	NaN	1	0	Median	19074000	10164000	8910300	15140	2418	14148	29987	72492;72493;72494	72493		3	9606
VEEISPNIR	0	1	Unmodified	1055.5611	0.56112349	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	12	0												1					13.599	13.599	2	0.00010979	7042	DP690-12	172.14	117.99			0.71302	0.79271	NaN	1	0	Median	267900000	152270000	115630000	15141	2342	14149	29988	72495;72496;72497;72498;72499	72497		5	9606
VEEQEPELTSTPNFVVEVIK	1	0	Unmodified	2286.1631	0.16310875	1130	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	9.67	3.77							2								1		21.011	21.011	2	5.6649E-12	16313	DP690-15	171.11	171.11			0.8826	0.98612	18.889	2	0	Median	10085000	5976400	4108700	15142	1130	14150	29989;29990;29991	72500;72501;72502;72503;72504;72505;72506;72507;72508;72509;72510	72502		11	9606
VEESSWLIEDGK	1	0	Unmodified	1390.6616	0.6616254	2432	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	6	0						1											17.081	17.081	2	0.00090574	10696	DP690-6	106.4	79.511			1.0248	1.1615	NaN	1	0	Median	6128900	2783900	3345000	15143	2432	14151	29992	72511	72511		1	9606
VEESTQVGGDPFPAVFGDFLGR	0	1	Unmodified	2323.1121	0.11207623	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	9.33	0.471									2	1							24.156	24.156	2	4.3539999999999997E-44	22033	DP690-10	270.74	270.74			0.63642	0.79444	22.997	2	0	Median	44560000	26356000	18205000	15144	1270	14152	29993;29994;29995	72512;72513;72514;72515;72516;72517;72518	72512		7	9606
VEEVELPVEK	1	0	Unmodified	1169.618	0.61796967	1962	Q99873;Q9NR22	PRMT1;PRMT8	Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8	yes	no	0	0	0	6	0						1											15.443	15.443	2	0.0023331	8709	DP690-6	100.02	54.337			1.7838	2.0393	NaN	1	0	Median	8997400	2365000	6632400	15145	1962	14153	29996	72519	72519		1	9606
VEFATLQEALAHALTEK	1	0	Unmodified	1869.9836	0.98362824	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							22.081	22.081	3	3.2986E-07	19531	DP690-10	142.57	111.6			0.79274	0.97968	NaN	1	0	Median	75765000	37957000	37808000	15146	1301	14154	29997	72520;72521;72522;72523	72520		4	9606
VEFMDDTSR	0	1	Oxidation (M)	1114.4601	0.46008882	997	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	1	0	12	4								1								1	11.978	11.978	2	0.0085614	4531	DP690-16	99.136	75.816			0.96174	1.0493	4.0248	2	0	Median	302660000	153100000	149570000	15147	997	14155	29998;29999	72524;72525;72526;72527;72528	72524	1520	5	9606
VEFMDDTSR	0	1	Unmodified	1098.4652	0.4651742	997	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	0	0	8	0								1									14.428	14.428	2	0.002043	7430	DP690-8	114.5	86.324			0.99294	1.1293	NaN	1	0	Median	12121000	5985800	6135200	15148	997	14155	30000	72529;72530;72531	72530		3	9606
VEFTFPDFVTEGAR	0	1	Unmodified	1613.7726	0.77257283	124	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	13	0													1				21.645	21.645	2	4.0892E-05	17553	DP690-13	134.2	103.58			0.72465	0.87727	NaN	1	0	Median	62716000	37446000	25270000	15149	124	14156	30001	72532;72533;72534;72535;72536	72533		5	9606
VEGDLKGPEIDVK	2	0	Unmodified	1397.7402	0.74021007	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9.33	0.471									2	1							13.791	13.791	2;3	0.00030047	6824	DP690-9	173.76	4.9337			0.78712	0.85378	1.7872	3	0	Plateau	899230000	492000000	407220000	15150	1145	14157	30002;30003;30004	72537;72538;72539;72540;72541;72542;72543	72541		7	9606
VEGDLKGPEVDIR	1	1	Unmodified	1425.7464	0.74635808	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	9	0									2								14.054	14.054	2;3	0.0050182	7188	DP690-9	87.719	52.97			0.53956	0.62579	28.745	2	0	Median	76805000	45037000	31768000	15151	1145	14158	30005;30006	72544;72545;72546;72547;72548;72549;72550	72547		7	9606
VEGDLKGPEVDLK	2	0	Unmodified	1397.7402	0.74021007	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9	0									2								13.778	13.778	2;3	1.8439E-07	6838	DP690-9	196.7	0			0.73907	0.84153	2.2353	2	0	Median	267360000	147540000	119820000	15152	1145	14159	30007;30008	72551;72552;72553;72554;72555;72556	72552		6	9606
VEGDLKGPEVDLKGPK	3	0	Unmodified	1679.9094	0.90940066	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	2	9	0									2								13.106	13.106	3;4	1.7278E-06	5942	DP690-9	146.84	0			0.67713	0.74311	7.568	2	0	Median	101740000	59101000	42638000	15153	1145	14160	30009;30010	72557;72558;72559;72560;72561;72562	72558		6	9606
VEGEIKAPDVDIK	2	0	Unmodified	1411.7559	0.75586013	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	10	0										1							14.45	14.45	3	0.0031841	8694	DP690-10	76.357	18.089			0.60359	0.72584	NaN	1	0	Median	130670000	75901000	54766000	15154	1145	14161	30011	72563;72564	72563		2	9606
VEGEMKVPDVDIK	2	0	Oxidation (M)	1473.7385	0.73849551	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	1	1	9.5	0.5									1	1							13.37	13.37	3	0.013592	7104	DP690-10	63.727	8.7763			0.69115	0.8016	14.005	2	0	Median	246040000	142600000	103440000	15155	1145	14162	30012;30013	72565;72566;72567;72568	72565	1797	4	9606
VEGMTELYFQLK	1	0	Oxidation (M)	1472.7221	0.72211717	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									1								18.347	18.347	2	0.00021305	12879	DP690-9	134.68	102.92			0.84348	1.009	NaN	1	0	Median	41637000	22124000	19513000	15156	1046	14163	30014	72569	72569	1642	1	9606
VEGMTELYFQLK	1	0	Unmodified	1456.7272	0.72720254	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								20.094	20.094	2	0.0032247	14993	DP690-9	128.27	68.151			NaN	NaN	NaN	0	0	Median	9907800	0	9907800	15157	1046	14163	30015	72570	72570		1	9606
VEGTEPTTAFNLFVGNLNFNK	1	0	Unmodified	2311.1485	0.14846174	534	P19338	NCL	Nucleolin	yes	yes	0	0	0	11	0											1						23.586	23.586	2	0.00022061	21156	DP690-11	118.24	70.466			NaN	NaN	NaN	0	0	Median	2158700	0	2158700	15158	534	14164	30016	72571	72571		1	9606
VEIAGPGFINVHLR	0	1	Unmodified	1520.8463	0.8463469	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	9	3.56				1							1	1					20.096	20.096	2;3	0.00032317	13098	DP690-12	101.56	101.56			0.75886	0.93415	13.022	3	0	Median	152590000	86566000	66021000	15159	886	14165	30017;30018;30019	72572;72573;72574;72575;72576;72577	72575		6	9606
VEILANDQGNR	0	1	Unmodified	1227.6208	0.62076364	508	P17066;P48741	HSPA6;HSPA7	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	yes	no	0	0	0	8.33	4.32		1	1	1					3		1	1				1	12.517	12.517	2	5.6642E-06	5792	DP690-11	195.17	0			1.1305	1.2391	27.561	6	0	Median	2549400000	1119200000	1430200000	15160	508	14166	30020;30021;30022;30023;30024;30025;30026;30027;30028	72578;72579;72580;72581;72582;72583;72584;72585;72586;72587;72588;72589;72590;72591;72592;72593;72594;72595;72596;72597;72598;72599;72600;72601;72602	72580		25	9606
VEISAPSNFEHR	0	1	Unmodified	1384.6735	0.67352749	350	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	0	0	12	0												1					13.764	13.764	3	0.00027841	7220	DP690-12	107.34	52.086			0.93355	1.0926	NaN	1	0	Median	96602000	52850000	43752000	15161	350	14167	30029	72603;72604;72605;72606	72606		4	9606
VEKDGLILTSR	1	1	Unmodified	1229.698	0.69795133	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	1	7.5	0.5							1	1									13.051	13.051	3	0.00079786	5879	DP690-7	98.156	77.148			0.85483	0.94631	11.453	2	0	Median	121090000	63583000	57512000	15162	1939	14168	30030;30031	72607;72608;72609;72610;72611	72608		5	9606
VELDNMPLR	0	1	Oxidation (M)	1101.5488	0.54884425	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	1	0	10.5	1.5									1			1					13.842	13.842	2	0.0088134	7291	DP690-12	98.523	63.029			0.87549	1.025	23.82	2	0	Median	361660000	196470000	165190000	15163	1322	14169	30032;30033	72612;72613;72614;72615;72616;72617	72613	2047	6	9606
VELDNMPLR	0	1	Unmodified	1085.5539	0.55392962	1322	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	12	0												1					16.261	16.261	2	0.00025728	10844	DP690-12	161.9	108.96			0.7875	0.87486	NaN	1	0	Median	271950000	151850000	120100000	15164	1322	14169	30034	72618;72619;72620;72621	72621		4	9606
VELECETIKQENTR	1	1	Unmodified	1747.8411	0.8410631	114	O14777	NDC80	Kinetochore protein NDC80 homolog	yes	yes	0	0	1	11	0											1						12.667	12.667	3	0.00040444	5938	DP690-11	100.73	78.867			0.88867	1.0708	NaN	1	0	Median	64948000	35804000	29144000	15165	114	14170	30035	72622	72622		1	9606
VELFFKDDANNDPQWSEEQLIAAK	2	0	Unmodified	2806.345	0.34498929	560	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	1	5	0					1												19.786	19.786	3	0.00041583	14136	DP690-5	81.373	66.965			1.1054	1.0784	NaN	1	0	Median	19757000	9143900	10613000	15166	560	14171	30036	72623;72624;72625;72626	72624		4	9606
VELHSTCQTISVDR	0	1	Unmodified	1643.7937	0.79371898	77	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	11	0											1						13.048	13.048	3	0.015652	6544	DP690-11	58.071	30.399			1.0972	1.3081	NaN	1	0	Median	42484000	19560000	22925000	15167	77	14172	30037	72627	72627		1	9606
VELQELNDR	0	1	Unmodified	1114.5619	0.56185177	424	P08670;P17661	VIM;DES	Vimentin;Desmin	yes	no	0	0	0	10.6	3.32				1								3	1				14.279	14.279	2	8.079E-05	7693	DP690-13	180.87	101.16			0.82232	0.87049	NaN	1	0	Median	1356100000	901120000	454960000	15168	424	14173	30038;30039;30040;30041;30042	72628;72629;72630;72631;72632;72633;72634;72635;72636	72634		9	9606
VELSDVQNPAISITENVLHFK	1	0	Unmodified	2352.2325	0.23252572	2287	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	9.5	0.5									1	1							22.394	22.394	3	8.2712E-07	17689	DP690-9	134.04	111.4			0.77901	0.99789	NaN	1	0	Median	70661000	64285000	6375900	15169	2287	14174	30043;30044	72637;72638;72639;72640	72639		4	9606
VELVPPTPAEIPR	0	1	Unmodified	1416.7977	0.79766537	284	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	0	16	0																1	17.906	17.906	2	0.0048756	12173	DP690-16	84.687	48.003			0.56677	0.65945	NaN	1	0	Median	10386000	6261000	4124600	15170	284	14175	30045	72641;72642;72643;72644;72645	72641		5	9606
VENGEGTIPVESSDIVPTWDGIR	0	1	Unmodified	2469.2023	0.2023478	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											2						20.494	20.494	2	4.4286E-17	17301	DP690-11	184.87	146.42			NaN	NaN	NaN	0	0	Median	16756000	0	16756000	15171	897	14176	30046;30047	72646;72647;72648	72647		3	9606
VENGQEPVIK	1	0	Unmodified	1111.5873	0.58733824	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						11.21	11.21	2	0.00052985	3879	DP690-11	117.81	85.856			0.794	0.8916	NaN	1	0	Median	226560000	119230000	107330000	15172	897	14177	30048	72649	72649		1	9606
VENLQAVQTDFSSDPLQK	1	0	Unmodified	2017.9956	0.99564949	2171	Q9HCU5	PREB	Prolactin regulatory element-binding protein	yes	yes	0	0	0	14	0														1			18.351	18.351	2	0.0583	13393	DP690-14	148.48	127.69			0.69526	0.83866	NaN	1	0	Median	28126000	17004000	11122000	15173	2171	14178	30049	72650	72650		0	9606
VENMVDQLLR	0	1	Oxidation (M)	1231.6231	0.62307182	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	3	0			1														16.166	16.166	2	0.0067045	10171	DP690-3	113.22	74.926			NaN	NaN	NaN	0	0	Median	9411900	0	9411900	15174	721	14179	30050	72651	72651	1061	1	9606
VENNDLVIAR	0	1	Unmodified	1141.6091	0.60913632	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	12	0												1					13.94	13.94	2	0.0060043	7541	DP690-12	120.12	60.874			NaN	NaN	NaN	0	0	Median	60714000	0	60714000	15175	2280	14180	30051	72652;72653	72653		2	9606
VENQENVSNLVIEDTELK	1	0	Unmodified	2072.0273	0.027343548	1084	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	4	0				1													18.885	18.885	2	1.9343E-09	13383	DP690-4	146.59	125.63			1.0281	1.1079	NaN	1	0	Median	6726000	3314100	3411900	15176	1084	14181	30052	72654;72655;72656;72657;72658;72659;72660	72654		7	9606
VENVASSSGPMR	0	1	Unmodified	1232.5819	0.58193529	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	0	11	0											1						11.487	11.487	2	0.0013256	4363	DP690-11	101.97	76.415			0.27587	0.32916	NaN	1	0	Median	36333000	27479000	8854000	15177	1234	14182	30053	72661	72661		1	9606
VEPAVSSVVNSIQVLTSK	1	0	Unmodified	1856.0255	0.025493054	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	10	0										1							21.963	21.963	2	0.0025844	19467	DP690-10	78.191	65.808			0.51126	0.6224	NaN	1	0	Median	20121000	13528000	6593000	15178	2303	14183	30054	72662	72662		1	9606
VEPFVCAQCR	0	1	Unmodified	1264.5693	0.56926211	1763	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	12	0												1					14.073	14.073	2	0.011692	7626	DP690-12	81.296	60.993			0.86499	1.0279	NaN	1	0	Median	36770000	20044000	16726000	15179	1763	14184	30055	72663;72664	72663		2	9606
VEPGLGADNSVVR	0	1	Unmodified	1311.6783	0.67827852	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.67	3.77		1							1	1	1	1		1			14.079	14.079	2	6.7904E-05	7715	DP690-12	125.23	84.448			0.78472	0.87711	13.208	6	0	Median	3413499999.9999995	1903399999.9999998	1509999999.9999998	15180	549	14185	30056;30057;30058;30059;30060;30061	72665;72666;72667;72668;72669;72670;72671;72672;72673;72674;72675;72676;72677;72678;72679;72680;72681;72682;72683;72684;72685	72675		21	9606
VEPVGNAPLLALVHK	1	0	Unmodified	1555.9086	0.9086128	1282	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	2	0		1															18.28	18.28	3	0.030121	11582	DP690-2	87.498	87.498			0.73588	0.7383	NaN	1	0	Median	5406100	3204000	2202000	15181	1282	14186	30062	72686	72686		0	9606
VEPYSLTAQQSSLIR	0	1	Unmodified	1690.889	0.88899957	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	12	1											1		1				17.3	17.3	2	5.0083E-07	12716	DP690-11	190.36	140.16			0.60083	0.72365	NaN	1	0	Median	83819000	50115000	33704000	15182	1932	14187	30063;30064	72687;72688;72689	72688		3	9606
VEQATKPSFESGR	1	1	Unmodified	1434.7103	0.71030693	692	P38159	RBMX	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	yes	0	0	1	13	0													2				10.545	10.545	2;3	2.8764E-05	2870	DP690-13	150.51	106.32			0.72158	0.8097	13.516	2	0	Median	513910000	291460000	222460000	15183	692	14188	30065;30066	72690;72691;72692	72691		3	9606
VEQIAAIAQELNELDYYDSHNVNTR	0	1	Unmodified	2904.389	0.38897937	186	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	11	0											1						21.528	21.528	3	0.00024872	18681	DP690-11	86.18	70.284			0.97466	1.1786	NaN	1	0	Median	21891000	9767000	12124000	15184	186	14189	30067	72693;72694	72693		2	9606
VEQIKEYHHLHQAVHAAK	2	0	Unmodified	2137.1181	0.11810508	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	1	9	0									1								10.249	10.249	4	0.076557	2467	DP690-9	32.746	17.401			0.75016	0.92201	NaN	1	0	Median	3287400	2033600	1253800	15185	1453	14190	30068	72695;72696	72695		2	9606
VEQLFQVMNGILAQDSACSQR	0	1	Oxidation (M)	2409.1417	0.14167857	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.6	0.49									2	3							21.033	21.033	2	5.4527E-29	13937	DP690-9	224.55	204.97			0.90729	1.1336	39.655	3	0	Median	40632000	30212000	10419000	15186	1046	14191	30069;30070;30071;30072;30073	72697;72698;72699;72700;72701;72702;72703;72704;72705;72706;72707;72708;72709;72710	72708	1643	14	9606
VEQLFQVMNGILAQDSACSQR	0	1	Unmodified	2393.1468	0.14676395	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.6	0.49									2	3							22.96	22.96	2	3.9573000000000004E-57	20550	DP690-10	268.18	192.27			0.83029	1.0357	8.3328	2	0	Median	32965000	18111000	14854000	15187	1046	14191	30074;30075;30076;30077;30078	72711;72712;72713;72714;72715;72716;72717;72718;72719;72720;72721	72714		11	9606
VEQLGAEGNVEESQK	1	0	Unmodified	1615.7689	0.76894402	2457	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	11	2									1				1				12.545	12.545	2	1.5492E-15	5307	DP690-13	240.65	200.78			0.7889	0.91403	NaN	1	0	Median	41391000	26587000	14804000	15188	2457	14192	30079;30080	72722;72723;72724	72722		3	9606
VEQLKPYHAHKEEMIK	3	0	Oxidation (M)	1995.0248	0.024781548	1392	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	1	2	12	0												1					10.217	10.217	4	0.044866	2459	DP690-12	46.89	30.143			0.67679	0.73305	NaN	1	0	Median	34514000	21106000	13407000	15189	1392	14193	30081	72725	72725		1	9606
VEQPQDVVTGNPTVVR	0	1	Unmodified	1736.9057	0.90571227	1575	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	0	10	0										2							15.248	15.248	2	5.4245E-07	9902	DP690-10	156.08	112.58			0.92407	1.1549	NaN	1	0	Median	31933000	18558000	13375000	15190	1575	14194	30082;30083	72726;72727;72728;72729	72728		4	9606
VEQTETPEMMEAR	0	1	2 Oxidation (M)	1581.6651	0.66507257	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	2	0	10	0										1							10.515	10.515	2	0.0077471	3028	DP690-10	83.226	66.508			0.82691	1.0323	NaN	1	0	Median	67372000	39035000	28337000	15191	858	14195	30084	72730	72730	1303;1304	1	9606
VEQTETPEMMEAR	0	1	Unmodified	1549.6752	0.67524333	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	10	0										1							13.97	13.97	2	0.006287	8020	DP690-10	80.834	57.515			0.77113	0.96267	NaN	1	0	Median	28195000	13265000	14930000	15192	858	14195	30085	72731	72731		1	9606
VEQVLSLEPQHELK	1	0	Unmodified	1647.8832	0.88318591	313	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	0	15	0															3		15.402	15.402	2;3	2.7663E-05	9164	DP690-15	164.22	136.25			0.74487	0.83455	11.675	2	0	Median	344220000	209540000	134680000	15193	313	14196	30086;30087;30088	72732;72733;72734;72735;72736;72737;72738;72739;72740	72738		9	9606
VESDLKGPEVDIEGPEGK	2	0	Unmodified	1896.9317	0.93165225	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9.5	0.5									1	1							15.01	15.01	3	0.001131	8628	DP690-9	63.392	63.392			0.65185	0.77122	NaN	1	0	Median	72920000	63528000	9391400	15194	1145	14197	30089;30090	72741;72742;72743;72744	72744		4	9606
VESEIKVPDVELK	2	0	Unmodified	1483.8134	0.81337501	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9.33	0.471									2	1							16.344	16.344	2;3	1.6839E-05	10171	DP690-9	129.76	106.29			0.70514	0.80552	5.4154	2	0	Median	347120000	194380000	152740000	15195	1145	14198	30091;30092;30093	72745;72746;72747;72748;72749;72750;72751;72752;72753	72749		9	9606
VESIQCFQNTEAGSPTIMLLSLK	1	0	Oxidation (M)	2581.2768	0.27677507	1278	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	1	0	9	0									1								28.039	28.039	3	0.040679	23236	DP690-9	40.369	23.107			0.43489	0.51655	NaN	1	0	Median	1687900	1211100	476820	15196	1278	14199	30094	72754	72754	1959	1	9606
VESQSSFGTLR	0	1	Unmodified	1209.599	0.59896556	206	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	4	0				2													13.756	13.756	2	0.0019813	6863	DP690-4	134.25	47.414			NaN	NaN	NaN	0	0	Median	0	0	0	15197	206	14200	30095;30096	72755;72756	72755		2	9606
VETAATEAELK	1	0	Unmodified	1160.5925	0.5924832	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	9	0									1								12.368	12.368	2	0.00030613	5029	DP690-9	119.75	64.377			1.0336	1.286	NaN	1	0	Median	23384000	11774000	11609000	15198	1762	14201	30097	72757;72758;72759;72760	72759		4	9606
VETCCVIGNYYSLR	0	1	Unmodified	1732.7913	0.79127614	2362	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	12	0												1					17.87	17.87	2	0.001053	13001	DP690-12	100.09	68.447			0.93709	1.1238	NaN	1	0	Median	21882000	9363300	12518000	15199	2362	14202	30098	72761;72762;72763	72761		3	9606
VETCGCAEGYAR	0	1	Unmodified	1371.5547	0.55473426	125	O14972	DSCR3	Down syndrome critical region protein 3	yes	yes	0	0	0	14	0														1			11.366	11.366	2	0.00014172	3887	DP690-14	123.75	112.18			0.71495	0.86701	NaN	1	0	Median	23480000	15325000	8155100	15200	125	14203	30099	72764;72765	72764		2	9606
VETFSGVYK	1	0	Unmodified	1028.5179	0.51786169	962	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	15	0															1		14.277	14.277	2	0.0016554	7741	DP690-15	118.74	41.896			0.97477	1.0986	NaN	1	0	Median	92330000	47445000	44885000	15201	962	14204	30100	72766;72767;72768;72769	72769		4	9606
VETFSGVYKK	2	0	Unmodified	1156.6128	0.61282471	962	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	1	15	0															1		12.065	12.065	3	0.011456	4748	DP690-15	61.765	61.765			1.0313	1.1799	NaN	1	0	Median	8685400	3904900	4780500	15202	962	14205	30101	72770;72771;72772;72773	72771		4	9606
VETGILRPGMVVTFAPVNITTEVK	1	1	Oxidation (M)	2586.4091	0.40910987	1118	Q05639	EEF1A2	Elongation factor 1-alpha 2	yes	yes	0	1	1	11	2									1				1				19.577	19.577	3	0.0003027	14932	DP690-13	98.533	85.604			0.69112	0.80793	0.72263	2	0	Median	57776000	31267000	26509000	15203	1118	14206	30102;30103	72774;72775;72776;72777	72775	1734	4	9606
VETGVLKPGMVVTFAPVNVTTEVK	2	0	Oxidation (M)	2530.3717	0.37166174	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	10.8	3.42			1		2	1			3	1	1	1	7	3	1		19.765	19.765	2;3	9.7069E-22	13421	DP690-13	187.39	171.15			0.81338	0.88182	4.8522	15	0	Median	7921199999.999999	4239299999.9999995	3681899999.9999995	15204	1031	14207	30104;30105;30106;30107;30108;30109;30110;30111;30112;30113;30114;30115;30116;30117;30118;30119;30120;30121;30122;30123;30124	72778;72779;72780;72781;72782;72783;72784;72785;72786;72787;72788;72789;72790;72791;72792;72793;72794;72795;72796;72797;72798;72799;72800;72801;72802;72803;72804;72805;72806;72807;72808;72809;72810;72811;72812;72813;72814;72815;72816;72817;72818;72819;72820;72821;72822;72823;72824;72825;72826;72827;72828;72829;72830;72831;72832;72833;72834;72835;72836;72837;72838;72839	72794	1570	62	9606
VETGVLKPGMVVTFAPVNVTTEVK	2	0	Unmodified	2514.3767	0.37674711	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	9.44	3.47					3				1	1	1		2	1			19.419	19.419	2;3	9.0322E-20	13604	DP690-5	180.02	147.87			0.80453	0.89039	14.022	7	0	Median	2740300000	1490399999.9999998	1249900000	15205	1031	14207	30125;30126;30127;30128;30129;30130;30131;30132;30133	72840;72841;72842;72843;72844;72845;72846;72847;72848;72849;72850;72851;72852;72853;72854;72855;72856;72857;72858;72859;72860;72861;72862;72863;72864;72865;72866;72867;72868;72869;72870;72871;72872	72863		33	9606
VETPVLPPVLVPR	0	1	Unmodified	1414.8548	0.85478632	143	P84022;Q15796;O15198	SMAD3;SMAD2;SMAD9	Mothers against decapentaplegic homolog 3;Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 9	yes	no	0	0	0	8.5	4.5				1									1				19.912	19.912	2	0.0015514	14653	DP690-4	96.665	96.665			0.70805	0.81771	NaN	1	0	Median	23070000	21985000	1085400	15206	143	14208	30134;30135	72873;72874;72875;72876	72875		4	9606
VETQEVNPGASR	0	1	Unmodified	1285.6262	0.62624295	2046	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	10	0										1							10.763	10.763	2	0.020291	3332	DP690-10	98.04	36.361			NaN	NaN	NaN	0	0	Median	0	0	0	15207	2046	14209	30136	72877	72877		1	9606
VETQFQNGHYDK	1	0	Unmodified	1464.6634	0.66335673	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															10.851	10.851	3	0.016003	3002	DP690-2	61.235	48.674			1.1719	1.1766	NaN	1	0	Median	6176000	2719300	3456700	15208	1179	14210	30137	72878;72879	72878		2	9606
VETYLNENLR	0	1	Unmodified	1249.6303	0.63026569	2424	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	10	0										1							15.189	15.189	2	0.00015944	9776	DP690-10	134.05	58.672			1.0832	1.3351	NaN	1	0	Median	137310000	72474000	64840000	15209	2424	14211	30138	72880;72881;72882	72881		3	9606
VEVERDNLAEDIMR	0	2	Oxidation (M)	1703.8148	0.81484835	424	P08670	VIM	Vimentin	yes	yes	0	1	1	12	3.16				1								2	3	1	1		14.662	14.662	2;3	0.0005353	8135	DP690-12	94.673	75.685			0.80697	0.90062	20.673	8	0	Median	3800299999.9999995	2053899999.9999998	1746399999.9999998	15210	424	14212	30139;30140;30141;30142;30143;30144;30145;30146	72883;72884;72885;72886;72887;72888;72889;72890;72891;72892;72893;72894;72895;72896;72897;72898;72899;72900;72901;72902;72903;72904	72886	480	21	9606
VEVERDNLAEDIMR	0	2	Unmodified	1687.8199	0.81993373	424	P08670	VIM	Vimentin	yes	yes	0	0	1	12.7	0.745												3	2	1			16.497	16.497	2;3	0.00011373	11145	DP690-12	130.47	97.938			0.80727	0.92109	14.651	4	0	Median	1682799999.9999998	890940000	791900000	15211	424	14212	30147;30148;30149;30150;30151;30152	72905;72906;72907;72908;72909;72910;72911;72912;72913;72914;72915;72916;72917;72918;72919	72909		15	9606
VEVFEHAVNNTAGDDLAK	1	0	Unmodified	1927.9276	0.92756992	727	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	2	0		1															14.964	14.964	3	0.00076531	7736	DP690-2	67.645	46.89			0.90172	0.90433	NaN	1	0	Median	5040500	2586500	2454000	15212	727	14213	30153	72920;72921;72922;72923	72922		4	9606
VEVGKDQEFTVDTR	1	1	Unmodified	1621.7948	0.79476484	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	9.67	0.471									1	2							13.713	13.713	3	0.00089261	7602	DP690-10	140.31	95.34			0.88987	1.0321	NaN	1	0	Median	22776000	11834000	10941000	15213	250	14214	30154;30155;30156	72924;72925;72926	72925		3	9606
VEVGTEVTDYR	0	1	Unmodified	1266.6092	0.6091959	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															14.618	14.618	2	0.00045855	7261	DP690-2	114.86	71.832			1.7925	1.8731	NaN	1	0	Median	11368000	4333900	7033700	15214	1179	14215	30157	72927	72927		1	9606
VEVTEFEDIK	1	0	Unmodified	1207.5972	0.59723423	447	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	6	0						1											17.001	17.001	2	0.0020847	10558	DP690-6	101.65	55.22			1.5516	1.7735	NaN	1	0	Median	8948800	3374100	5574700	15215	447	14216	30158	72928;72929	72929		2	9606
VEVVEEDGPSEK	1	0	Unmodified	1315.6143	0.61434085	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	0	11	0											1						12.269	12.269	2	0.0026431	5376	DP690-11	91.701	57.957			1.0946	1.3337	NaN	1	0	Median	33928000	16416000	17512000	15216	144	14217	30159	72930	72930		1	9606
VEVYPVELLLVR	0	1	Unmodified	1427.8388	0.8388019	841	P51784	USP11	Ubiquitin carboxyl-terminal hydrolase 11	yes	yes	0	0	0	3	0			1														22.896	22.896	2	0.0019138	18461	DP690-3	95.775	74.937			1.449	1.6186	NaN	1	0	Median	6762100	3161400	3600700	15217	841	14218	30160	72931;72932;72933;72934	72931		4	9606
VEYHFLSPYVSPK	1	0	Unmodified	1564.7926	0.79257999	360	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	3	0			1														16.778	16.778	3	0.045443	11050	DP690-3	49.333	30.089			0.76861	0.81503	NaN	1	0	Median	10680000	5429500	5250400	15218	360	14219	30161	72935	72935		1	9606
VEYQENGPLFSELK	1	0	Unmodified	1651.8094	0.80935227	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	12.5	0.5												1	1				18.516	18.516	2	3.8178E-06	13852	DP690-12	196.88	155.77			0.88102	1.0296	9.5183	2	0	Median	135430000	70554000	64874000	15219	1589	14220	30162;30163	72936;72937;72938;72939;72940;72941;72942	72939		7	9606
VEYSEEELKTHISK	2	0	Unmodified	1690.8414	0.84138068	479	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	8	4				1								1					12.949	12.949	3	1.4663E-05	6121	DP690-12	132.97	97.203			1.6029	1.732	74.837	2	0	Median	212400000	100940000	111450000	15220	479	14221	30164;30165	72943;72944;72945;72946	72943		4	9606
VEYTLGEESEAPGQR	0	1	Unmodified	1663.7689	0.76894402	1111	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	6	4		1								1							14.594	14.594	2	2.1801E-08	8962	DP690-10	240	197.58			0.74002	0.84254	7.4321	2	0	Median	101360000	58595000	42766000	15221	1111	14222	30166;30167	72947;72948;72949;72950;72951;72952;72953;72954	72948		8	9606
VEYTPYEEGLHSVDVTYDGSPVPSSPFQVPVTEGCDPSR	0	1	Unmodified	4295.9481	0.94811353	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	1									1		1						20.649	20.649	3	2.636E-12	15615	DP690-9	106.88	94.731			NaN	NaN	NaN	0	0	Median	28172000	28172000	0	15222	549	14223	30168;30169	72955;72956;72957	72957		3	9606
VFANAPDSACVIGLK	1	0	Unmodified	1560.797	0.79701344	518	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	11	0											1						17.454	17.454	2	0.0047455	12901	DP690-11	116.74	73.934			NaN	NaN	NaN	0	0	Median	18709000	18709000	0	15223	518	14224	30170	72958;72959	72958		2	9606
VFANNADQQLVK	1	0	Unmodified	1345.699	0.69901396	1421	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	8.67	3.77						2								1			13.942	13.942	2	0.00013824	7427	DP690-14	123.86	94.693			0.80172	0.97167	NaN	1	0	Median	68822000	41359000	27462000	15224	1421	14225	30171;30172;30173	72960;72961;72962;72963	72961		4	9606
VFANPEDCVAFGK	1	0	Unmodified	1452.6708	0.6707503	460	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	0	16	0																1	16.84	16.84	2	6.9134E-05	10907	DP690-16	145.28	69.487			0.65584	0.76322	NaN	1	0	Median	25295000	13972000	11324000	15225	460	14226	30174	72964;72965;72966	72966		3	9606
VFAWHPHTNK	1	0	Unmodified	1235.62	0.61997578	2199	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	12	0												1					10.863	10.863	3	0.0016935	3337	DP690-12	93.667	73.237			0.75453	0.88922	NaN	1	0	Median	85864000	47566000	38298000	15226	2199	14227	30175	72967;72968;72969;72970	72967		4	9606
VFDAIMNFK	1	0	Unmodified	1083.5423	0.54230231	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	11	0											1						19.301	19.301	2	0.00046299	15613	DP690-11	152.47	125.51			1.0394	1.2432	NaN	1	0	Median	99915000	49662000	50253000	15227	483	14228	30176	72971;72972	72971		2	9606
VFDAIMNFK	1	0	Oxidation (M)	1099.5372	0.53721693	483	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	3	0			1														17.16	17.16	2	0.0088134	11511	DP690-3	98.523	83.854			1.0541	1.1019	NaN	1	0	Median	56587000	26621000	29966000	15228	483	14228	30177	72973;72974;72975;72976	72976	601	4	9606
VFDGIPPPYDK	1	0	Unmodified	1246.6234	0.6233894	705	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	15	0															1		16.586	16.586	2	0.0505	10682	DP690-15	86.882	46.823			NaN	NaN	NaN	0	0	Median	15360000	15360000	0	15229	705	14229	30178	72977	72977		1	9606
VFDKDGNGYISAAELR	1	1	Unmodified	1753.8635	0.8635131	450	P0DP25;P0DP24;P0DP23			yes	no	0	0	1	16	0																1	15.968	15.968	3	0.022555	9824	DP690-16	86.777	57.838			NaN	NaN	NaN	0	0	Median	11463000	11463000	0	15230	450	14230	30179	72978;72979	72978		2	9606
VFDQQSSPMVTR	0	1	Oxidation (M)	1409.6609	0.66091389	153	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	1	0	3	0			1														12.681	12.681	2	0.00034271	5518	DP690-3	121.61	97.757			0.83655	0.93606	NaN	1	0	Median	7147400	3695700	3451700	15231	153	14231	30180	72980;72981;72982	72980	171	3	9606
VFEEDALSWEDKLNR	1	1	Unmodified	1849.8846	0.88464248	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								18.25	18.25	3	0.0004019	12726	DP690-9	130.24	81.048			0.5413	0.6278	NaN	1	0	Median	12145000	8161000	3984100	15232	1264	14232	30181	72983	72983		1	9606
VFEISPFEPWITR	0	1	Unmodified	1619.8348	0.83477916	1371	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	14	0														1			22.782	22.782	2	0.00014356	19101	DP690-14	166.66	166.66			0.7159	0.88567	NaN	1	0	Median	10799000	6053100	4746000	15233	1371	14233	30182	72984	72984		1	9606
VFEVMLATDR	0	1	Oxidation (M)	1195.5907	0.59070906	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	0	7	0							1										16.626	16.626	2	0.0043704	10356	DP690-7	98.033	79.257			0.97329	1.0908	NaN	1	0	Median	34751000	16458000	18293000	15234	557	14234	30183	72985;72986;72987;72988;72989	72989	723	5	9606
VFEVSLADLQNDEVAFR	0	1	Unmodified	1950.9687	0.96870646	946	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	14.5	0.5														1	1		22.039	22.039	2	1.4758E-24	18187	DP690-14	276.12	276.12			0.96282	1.1657	NaN	1	0	Median	43835000	22119000	21715000	15235	946	14235	30184;30185	72990;72991;72992;72993;72994;72995;72996	72993		7	9606
VFEVSLADLQNDEVAFRK	1	1	Unmodified	2079.0637	0.063669474	946	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	14	0														2			20.084	20.084	3	2.0696E-13	15738	DP690-14	178.01	137.77			NaN	NaN	NaN	0	0	Median	205160000	100120000	105040000	15236	946	14236	30186;30187	72997;72998;72999;73000	73000		4	9606
VFEYHNVLSNWNR	0	1	Unmodified	1676.8059	0.80593865	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	4	0				2													17.256	17.256	2;3	3.1217E-11	11436	DP690-4	183.99	125.62			NaN	NaN	NaN	0	0	Median	52996000	0	52996000	15237	1784	14237	30188;30189	73001;73002;73003;73004;73005	73003		5	9606
VFFINEEAK	1	0	Unmodified	1095.5601	0.56006086	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	0	10	0										1							16.711	16.711	2	0.052478	12050	DP690-10	87.696	31.263			NaN	NaN	NaN	0	0	Median	48063000	48063000	0	15238	2155	14238	30190	73006	73006		1	9606
VFFVHEGYQGLVDGGDHIK	1	0	Unmodified	2116.0378	0.037789075	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	3	0			1														16.664	16.664	4	0.026169	10845	DP690-3	46.131	34.686			0.87177	0.93135	NaN	1	0	Median	24415000	9345300	15070000	15239	415	14239	30191	73007;73008	73007		2	9606
VFGAPNVVEDEIDQYLSK	1	0	Unmodified	2021.9946	0.99458686	1711	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	12	0												1					23.433	23.433	2	1.6973E-06	20020	DP690-12	138.55	110.19			0.76611	0.92693	NaN	1	0	Median	2771100	1578600	1192500	15240	1711	14240	30192	73009;73010;73011;73012;73013	73011		5	9606
VFHGNESLWK	1	0	Unmodified	1215.6037	0.60365701	1195	Q13268	DHRS2	Dehydrogenase/reductase SDR family member 2, mitochondrial	yes	yes	0	0	0	11	4							1								1		13.677	13.677	3	0.0010876	7002	DP690-15	94.409	62.915			0.88993	0.98446	25.339	2	0	Median	122210000	65712000	56498000	15241	1195	14241	30193;30194	73014;73015;73016;73017;73018	73014		5	9606
VFIGNLNTALVK	1	0	Unmodified	1287.7551	0.75507227	2374	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	14	0														1			18.431	18.431	2	6.713E-05	13636	DP690-14	129.89	0			0.9102	1.1024	NaN	1	0	Median	71946000	38652000	33294000	15242	2374	14242	30195	73019;73020	73019		2	9606
VFIGNLNTLVVK	1	0	Unmodified	1315.7864	0.7863724	410	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	10	4						1								1			19.412	19.412	2	0.00019883	14762	DP690-14	140.16	124.5			0.81231	0.89818	12.887	2	0	Median	456680000	235340000	221350000	15243	410	14243	30196;30197	73021;73022;73023;73024;73025	73022		5	9606
VFIMDSCDELIPEYLNFIR	0	1	Oxidation (M)	2389.1334	0.1334053	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	7	4			2								2						24.104	24.104	2	4.0628E-06	21837	DP690-11	146.79	128.83			0.70498	0.75342	7.0336	2	0	Median	6785300	3184600	3600700	15244	416	14244	30198;30199;30200;30201	73026;73027;73028;73029;73030;73031;73032	73027	466	6	9606
VFIPHGLIMDR	0	1	Oxidation (M)	1312.6962	0.69617719	356	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	1	0	7	0							1										15.862	15.862	3	0.065535	9541	DP690-7	47.894	23.384			0.81359	0.89529	NaN	1	0	Median	56970000	28045000	28925000	15245	356	14245	30202	73033	73033		1	9606
VFIPHGLIMDR	0	1	Unmodified	1296.7013	0.70126256	356	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	7	0							1										17.046	17.046	3	0.0026116	10897	DP690-7	83.045	60.128			0.71724	0.81731	NaN	1	0	Median	22165000	11561000	10604000	15246	356	14245	30203	73034;73035;73036;73037	73037		4	9606
VFLENVIR	0	1	Unmodified	988.57057	0.57056597	990	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	16	0																1	17.79	17.79	2	0.055601	12370	DP690-16	148.33	90.16			1.0406	1.0083	NaN	1	0	Median	3339799999.9999995	1641699999.9999998	1698099999.9999998	15247	990	14246	30204	73038	73038		0	9606
VFLENVIRDAVTYTEHAK	1	1	Unmodified	2104.0953	0.095303954	990	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	16	0																2	21.275	21.275	3;4	0.00027541	16140	DP690-16	95.873	71.978			1.1161	1.2937	8.0686	2	0	Median	16379000	7510900	8867800	15248	990	14247	30205;30206	73039;73040;73041;73042;73043;73044;73045;73046	73046		8	9606
VFLLGEEVAQYDGAYK	1	0	Unmodified	1800.8934	0.89341625	466	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	14	0														1			20.711	20.711	2	0.0076236	16614	DP690-14	105.36	68.179			NaN	NaN	NaN	0	0	Median	12857000	0	12857000	15249	466	14248	30207	73047	73047		1	9606
VFLNILPPLTNSK	1	0	Unmodified	1454.8497	0.84970094	2033	Q9BX10	GTPBP2	GTP-binding protein 2	yes	yes	0	0	0	12	0												1					21.327	21.327	2	0.0066584	17484	DP690-12	79.82	47.812			0.44682	0.54149	NaN	1	0	Median	4020100	2407900	1612300	15250	2033	14249	30208	73048;73049	73048		2	9606
VFLQYLPAIR	0	1	Unmodified	1218.7125	0.71247918	1273	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	14	0														1			20.355	20.355	2	0.00010551	15972	DP690-14	143	109.45			0.73459	0.88589	NaN	1	0	Median	64627000	35039000	29588000	15251	1273	14250	30209	73050;73051;73052;73053	73050		4	9606
VFNELLVLLPDTAK	1	0	Unmodified	1570.897	0.89704506	1569	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	11	0											1						22.912	22.912	2	0.00012876	20315	DP690-11	121.21	97.693			0.86072	1.0555	NaN	1	0	Median	21391000	10364000	11028000	15252	1569	14251	30210	73054;73055;73056;73057	73055		4	9606
VFNETPINPR	0	1	Unmodified	1185.6142	0.6142217	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	3	0			1														14.13	14.13	2	9.8782E-05	7416	DP690-3	144.12	113.87			11.896	13.316	NaN	1	0	Median	35638000	3389700	32248000	15253	2515	14252	30211	73058;73059	73058		2	9606
VFNLFCLYGNIEK	1	0	Unmodified	1615.8068	0.80684985	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												3					22.647	22.647	2	0.0025512	19083	DP690-12	102.4	102.4			0.69733	0.84668	NaN	1	0	Median	6246500	4039400	2207100	15254	1750	14253	30212;30213;30214	73060;73061;73062;73063	73061		4	9606
VFNLYPR	0	1	Unmodified	907.49159	0.49158736	1359	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	12	0												1					16.528	16.528	2	0.030692	10948	DP690-12	116	24.905			NaN	NaN	NaN	0	0	Median	31517000	31517000	0	15255	1359	14254	30215	73064	73064		1	9606
VFNPYTEFK	1	0	Unmodified	1143.5601	0.56006086	1830	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	7	0							1										17.303	17.303	2	0.0039219	11254	DP690-7	128.61	95.057			NaN	NaN	NaN	0	0	Median	16744000	16744000	0	15256	1830	14255	30216	73065;73066	73066		2	9606
VFNPYTEFKEFSR	1	1	Unmodified	1662.8042	0.80420731	1830	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	1	7	0							1										18.75	18.75	3	3.8226E-05	13022	DP690-7	142.76	119.78			0.6835	0.72039	NaN	1	0	Median	17026000	10690000	6335300	15257	1830	14256	30217	73067;73068	73068		2	9606
VFNTGGAPR	0	1	Unmodified	917.47191	0.47191456	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		6															11.065	11.065	2	0.0097275	3121	DP690-2	130.04	69.279			NaN	NaN	NaN	0	0	Median	0	0	0	15258	602	14257	30218;30219;30220;30221;30222;30223	73069;73070;73071;73072;73073;73074	73070		6	9606
VFNTTPDDLDLHVIYDVSHNIAK	1	0	Unmodified	2625.3075	0.30748157	2475	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	12	0												1					20.48	20.48	4	1.1697E-06	16449	DP690-12	131.3	131.3			0.84699	0.99556	NaN	1	0	Median	89424000	52838000	36585000	15259	2475	14258	30224	73075;73076;73077;73078	73075		4	9606
VFNVFCLYGNVEK	1	0	Unmodified	1587.7755	0.77554972	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	12	0												1					21.354	21.354	2	3.6268E-05	17505	DP690-12	155.26	126.31			0.86012	0.99622	NaN	1	0	Median	112220000	59019000	53202000	15260	494	14259	30225	73079;73080;73081;73082;73083	73082		5	9606
VFNYNTLER	0	1	Unmodified	1154.572	0.57202253	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	3	0			1														15.537	15.537	2	0.0045406	9375	DP690-3	101.64	62.622			1.9033	2.1222	NaN	1	0	Median	38373000	11628000	26745000	15261	670	14260	30226	73084;73085	73084		2	9606
VFPSHFTQQR	0	1	Unmodified	1245.6255	0.62545508	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															12.192	12.192	3	0.0095049	4457	DP690-2	71.614	40.12			1.2959	1.3541	NaN	1	0	Median	11455000	4874400	6580300	15262	1555	14261	30227	73086;73087;73088	73088		3	9606
VFQASPEDHEKYGGDPQNPHK	2	0	Unmodified	2379.088	0.087986745	1717	Q8TCC3	MRPL30	39S ribosomal protein L30, mitochondrial	yes	yes	0	0	1	16	0																1	10.586	10.586	4	0.0026793	3071	DP690-16	63.488	41.716			0.68526	0.78627	NaN	1	0	Median	10667000	6383400	4283800	15263	1717	14262	30228	73089	73089		1	9606
VFQFLNAK	1	0	Unmodified	965.53345	0.53345218	1059	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	15	0															2		17.288	17.288	1;2	0.043648	11655	DP690-15	122.79	92.286			0.8127	0.91862	11.032	2	0	Median	244460000	127550000	116910000	15264	1059	14263	30229;30230	73090;73091	73091		0	9606
VFQGFFTGR	0	1	Unmodified	1057.5345	0.53451481	310	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	11	0											1						18.157	18.157	2	0.062305	13948	DP690-11	89.698	40.256			NaN	NaN	NaN	0	0	Median	0	0	0	15265	310	14264	30231	73092	73092		1	9606
VFQGTDEQLNDLYHNHQR	0	1	Unmodified	2213.025	0.024992557	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	10	0										2							14.65	14.65	3;4	0.00030788	8994	DP690-10	89.866	89.866			1.0989	1.3355	15.538	2	0	Median	303180000	164970000	138210000	15266	1794	14265	30232;30233	73093;73094	73093		2	9606
VFQNEVLGTLQR	0	1	Unmodified	1402.7569	0.75686319	1184	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	11	0											1						17.455	17.455	2	0.011022	12898	DP690-11	74.841	33.442			0.9543	1.1416	NaN	1	0	Median	51699000	23189000	28510000	15267	1184	14266	30234	73095	73095		1	9606
VFQSLPHENKPLTLSNYQTNK	2	0	Unmodified	2457.2652	0.26522283	364	P04080	CSTB	Cystatin-B	yes	yes	0	0	1	8	0								2									14.606	14.606	3;4	0.0027301	7649	DP690-8	63.184	63.184			0.62983	0.7327	0.32685	2	0	Median	23302000	13821000	9481500	15268	364	14267	30235;30236	73096;73097;73098;73099;73100;73101	73097		6	9606
VFQSSTSQEQVYNDCAK	1	0	Unmodified	1989.8738	0.87381979	648	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	3	0			1														13.447	13.447	2	1.8087E-22	6551	DP690-3	245.5	218.96			1.0404	1.1026	NaN	1	0	Median	10426000	4076100	6350200	15269	648	14268	30237	73102;73103;73104;73105	73102		4	9606
VFQTEAELQEVISDLQSK	1	0	Unmodified	2063.0423	0.04226533	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	10	0										2							23.25	23.25	2	7.9303E-34	21060	DP690-10	280.23	226.78			0.85794	1.0544	NaN	1	0	Median	35796000	18921000	16875000	15270	1794	14269	30238;30239	73106;73107;73108;73109	73107		4	9606
VFSATLGLVDIVK	1	0	Unmodified	1360.7966	0.79660274	439	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	11	0											1						21.121	21.121	2	0.050682	18136	DP690-11	58.274	40.801			0.72213	0.88218	NaN	1	0	Median	24248000	12117000	12131000	15271	439	14270	30240	73110	73110		1	9606
VFSDEVQQQAQLSTIR	0	1	Unmodified	1847.9377	0.93774068	2429	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	8	4				1								1					16.764	16.764	2	3.1812999999999997E-22	11500	DP690-12	286.09	239.14			0.89944	1.0692	NaN	1	0	Median	66089000	34321000	31768000	15272	2429	14271	30241;30242	73111;73112;73113;73114;73115;73116	73112		6	9606
VFSDIIYTVASCTENEASR	0	1	Unmodified	2160.9997	0.99974859	1706	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	10	0										1							21.734	21.734	2	6.7545E-05	19143	DP690-10	180.09	129.6			NaN	NaN	NaN	0	0	Median	5620300	5620300	0	15273	1706	14272	30243	73117;73118	73118		2	9606
VFSGLVSTGLK	1	0	Unmodified	1106.6336	0.63356015	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	8.17	3.39			1	1					1		3						16.963	16.963	2	0.0001982	11210	DP690-3	123.21	123.21			1.1319	1.1472	10.632	3	0	Plateau	438840000	320630000	118210000	15274	483	14273	30244;30245;30246;30247;30248;30249	73119;73120;73121;73122;73123;73124;73125;73126;73127;73128;73129;73130;73131;73132;73133;73134;73135;73136;73137	73129		19	9606
VFSIGPVFR	0	1	Unmodified	1020.5757	0.57565135	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	9.67	4.03				1								1	1				19.117	19.117	2	0.0001398	13640	DP690-4	170.06	141.55			0.81524	0.96966	11.943	3	0	Median	103140000	55764000	47371000	15275	495	14274	30250;30251;30252	73138;73139;73140;73141;73142;73143;73144;73145;73146;73147	73147		10	9606
VFSLIQQAVTR	0	1	Unmodified	1260.719	0.71902112	1727	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	10	0										1							18.408	18.408	2	0.0074218	14510	DP690-10	83.499	69.292			0.65132	0.81449	NaN	1	0	Median	34138000	19365000	14773000	15276	1727	14275	30253	73148	73148		1	9606
VFSLSSEFK	1	0	Unmodified	1042.5335	0.53351176	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							17.654	17.654	2	0.00061307	13322	DP690-10	145.63	100.55			0.9258	1.1069	NaN	1	0	Median	230040000	117050000	112990000	15277	269	14276	30254	73149;73150;73151;73152	73150		4	9606
VFSSAEALVQSFR	0	1	Unmodified	1439.7409	0.74087877	1115	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	3	0			1														20.24	20.24	2	0.0079089	15403	DP690-3	106.16	58.066			NaN	NaN	NaN	0	0	Median	2000900	2000900	0	15278	1115	14277	30255	73153	73153		1	9606
VFSWGFGGYGR	0	1	Unmodified	1231.5774	0.57744226	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	10.5	3.48				2	1				1		1	6	1	1	1		20.824	20.824	2	2.6941E-06	15409	DP690-12	205.58	157.92			0.94733	1.1237	19.263	10	0	Median	973050000	499150000	473900000	15279	2298	14278	30256;30257;30258;30259;30260;30261;30262;30263;30264;30265;30266;30267;30268;30269	73154;73155;73156;73157;73158;73159;73160;73161;73162;73163;73164;73165;73166;73167;73168;73169;73170;73171;73172;73173;73174;73175;73176;73177;73178;73179;73180;73181;73182;73183;73184;73185	73156		32	9606
VFSWLQQEGHLSEEEMAR	0	1	Oxidation (M)	2191.0004	0.0004172906	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	1	0	3	0			1														17.423	17.423	3	0.00017189	11905	DP690-3	104.78	80.067			0.76285	0.84406	NaN	1	0	Median	44436000	25221000	19215000	15280	559	14279	30270	73186;73187;73188;73189	73186	731	4	9606
VFTTGFSR	0	1	Unmodified	913.46577	0.46576654	1980	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	12	0												1					14.329	14.329	2	0.046087	8026	DP690-12	120.62	89.318			0.87047	1.0122	NaN	1	0	Median	109930000	60564000	49364000	15281	1980	14280	30271	73190	73190		0	9606
VFTTQELVQAFTHAPATLEADR	0	1	Unmodified	2444.2336	0.23358835	324	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	6	0						1											22.259	22.259	3	3.5263E-15	16544	DP690-6	163.79	163.79			0.96882	1.1104	NaN	1	0	Median	6773400	3226000	3547400	15282	324	14281	30272	73191;73192;73193;73194;73195;73196	73191		6	9606
VFTTVGSAEK	1	0	Unmodified	1037.5393	0.53932542	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															12.372	12.372	2	0.009052	4608	DP690-2	111.06	48.402			NaN	NaN	NaN	0	0	Median	12976000	12976000	0	15283	789	14282	30273	73197	73197		1	9606
VFVTPQAPLEAIQAYLAGHYR	0	1	Unmodified	2343.2376	0.23755152	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								23.362	23.362	3	0.00014655	18877	DP690-9	102.89	82.819			0.82239	1.0184	NaN	1	0	Median	2598800	1514200	1084600	15284	1453	14283	30274	73198;73199;73200;73201	73200		4	9606
VGAAEEELQK	1	0	Unmodified	1072.5401	0.5400537	2303	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	10	0										1							11.425	11.425	2	0.0013167	4287	DP690-10	106.68	62.334			0.56124	0.69291	NaN	1	0	Median	82999000	56907000	26092000	15285	2303	14284	30275	73202;73203;73204	73203		3	9606
VGAGAPVYLAAVLEYLTAEILELAGNAAR	0	1	Unmodified	2914.5804	0.58040896	442;378	Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q93077;Q7L7L0;P04908	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST1H2AC;HIST3H2A;HIST1H2AB	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E	no	no	0	0	0	16	0																1	30.277	30.277	2	6.7392E-12	21870	DP690-16	152.94	152.94			0.87902	1.0265	NaN	1	0	Median	1970500	929200	1041300	15286	442;378	14285	30276	73205;73206;73207;73208	73208		4	9606
VGAGAPVYMAAVLEYLTAEILELAGNAAR	0	1	Unmodified	2932.5368	0.53682958	1370	Q16777;Q6FI13	HIST2H2AC;HIST2H2AA3	Histone H2A type 2-C;Histone H2A type 2-A	yes	no	0	0	0	16	0																1	30.264	30.264	2	0.001457	21852	DP690-16	89.261	78.445			NaN	NaN	NaN	0	0	Median	0	0	0	15287	1370	14286	30277	73209	73209		1	9606
VGAVDADKHHSLGGQYGVQGFPTIK	2	0	Unmodified	2580.3085	0.30848463	1318	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	1	11	3.46					1								3				15.028	15.028	3;4	2.4679E-08	8894	DP690-13	127.58	99.094			0.7246	0.7841	3.5357	3	0	Median	751220000	420050000	331170000	15288	1318	14287	30278;30279;30280;30281	73210;73211;73212;73213;73214;73215;73216;73217	73214		8	9606
VGDIIDINEEVEEGWWSGTLNNK	1	0	Unmodified	2616.2344	0.23437621	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	11	0											1						23.271	23.271	2	0.045545	20846	DP690-11	115.1	88.51			NaN	NaN	NaN	0	0	Median	0	0	0	15289	2501	14288	30282	73218	73218		1	9606
VGDPQELNGITR	0	1	Unmodified	1297.6626	0.66262845	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															14.391	14.391	2	0.00021865	6891	DP690-2	141.71	114.82			0.80868	0.83945	NaN	1	0	Median	93866000	49751000	44115000	15290	789	14289	30283	73219;73220	73220		2	9606
VGDQILLAIK	1	0	Unmodified	1068.6543	0.6542956	1486	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	yes	yes	0	0	0	16	0																1	18.394	18.394	2	0.0020732	12754	DP690-16	101.72	66.284			0.81651	0.95581	NaN	1	0	Median	15101000	7690900	7410000	15291	1486	14290	30284	73221;73222;73223;73224	73223		4	9606
VGDYVYFENSSSNPYLVR	0	1	Unmodified	2107.9851	0.9850848	291	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	11	0											1						19.223	19.223	2	2.3488E-05	15478	DP690-11	150.49	121.7			NaN	NaN	NaN	0	0	Median	20775000	20775000	0	15292	291	14291	30285	73225;73226;73227	73226		3	9606
VGEAGLLSVDCSEAGPGALGLEAVSDSGTK	1	0	Unmodified	2845.3651	0.36513239	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							20.922	20.922	2	2.6590999999999996E-66	18009	DP690-10	257.06	257.06			0.72005	0.88345	NaN	1	0	Median	32259000	17627000	14632000	15293	250	14292	30286	73228;73229;73230;73231	73228		4	9606
VGEATETALTCLVEK	1	0	Unmodified	1619.8076	0.80763771	506	P16615;Q93084	ATP2A2;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	yes	no	0	0	0	11	0											2						18.511	18.511	2	2.6734999999999997E-19	14479	DP690-11	211.26	192.73			0.79924	0.95777	23.347	2	0	Median	156030000	92549000	63483000	15294	506	14293	30287;30288	73232;73233;73234	73234		2	9606
VGEAWQDRPGAPR	0	2	Unmodified	1437.7113	0.71130998	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	1	11	0											1						12.348	12.348	3	0.000329	5489	DP690-11	105.13	89.108			0.75871	0.93528	NaN	1	0	Median	229940000	134000000	95940000	15295	144	14294	30289	73235;73236	73235		2	9606
VGEAWQERPGAPR	0	2	Unmodified	1451.727	0.72696004	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	1	11	0											1						12.361	12.361	2	0.0010837	5549	DP690-11	115.23	94.26			0.64035	0.78937	NaN	1	0	Median	30925000	19638000	11287000	15296	144	14295	30290	73237	73237		1	9606
VGEFSGANKEKLEATINELV	2	0	Unmodified	2147.111	0.1110136	459	P10599	TXN	Thioredoxin	yes	yes	0	0	2	8	0								1									20.124	20.124	3	0.0056462	13725	DP690-8	62.765	49.035			0.71293	0.83551	NaN	1	0	Median	4937000	2667500	2269500	15297	459	14296	30291	73238;73239	73238		2	9606
VGEGPGVCWLAPEQTAGK	1	0	Unmodified	1854.8934	0.89343302	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	4	0				2													18.022	18.022	2	2.159E-05	12408	DP690-4	151.16	110.05			NaN	NaN	NaN	0	0	Median	4243900	2689400	1554500	15298	2116	14297	30292;30293	73240;73241;73242;73243	73240		4	9606
VGEIVVFR	0	1	Unmodified	917.53345	0.53345218	1026	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	0	0	0	16	0																1	16.834	16.834	2	0.069457	10802	DP690-16	107.59	44.446			0.83556	0.92263	NaN	1	0	Median	92022000	50970000	41052000	15299	1026	14298	30294	73244	73244		0	9606
VGELMDQNAFSLTQK	1	0	Oxidation (M)	1695.8138	0.81378572	1518	Q6ZYL4	GTF2H5	General transcription factor IIH subunit 5	yes	yes	0	1	0	16	0																1	16.925	16.925	2	5.11E-09	10957	DP690-16	196.16	173.15			0.91367	1.0699	NaN	1	0	Median	7148200	3537100	3611100	15300	1518	14299	30295	73245;73246;73247;73248	73247	2200	4	9606
VGEPTYSCR	0	1	Unmodified	1067.4706	0.47059393	1607	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	2	0		1															11.013	11.013	2	0.0059872	3196	DP690-2	95.815	69.921			2.6798	2.7396	NaN	1	0	Median	2440900	680930	1759900	15301	1607	14300	30296	73249	73249		1	9606
VGESNLTNGDEPTQCSR	0	1	Unmodified	1862.8065	0.80646851	1931	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	3	0			1														12.534	12.534	2	1.6171E-22	5314	DP690-3	240.37	211.61			1.2129	1.3504	NaN	1	0	Median	6108400	2896500	3211900	15302	1931	14301	30297	73250;73251;73252;73253;73254;73255	73250		6	9606
VGESSEQVSEEKTNEA	1	0	Unmodified	1721.7592	0.75916719	689	P37275	ZEB1	Zinc finger E-box-binding homeobox 1	yes	yes	0	0	1	10	0										3							10.981	10.981	2	0.0025578	3688	DP690-10	155.47	122.47			NaN	NaN	NaN	0	0	Median	14977000	0	14977000	15303	689	14302	30298;30299;30300	73256;73257;73258;73259	73258		4	9606
VGESVFHTTR	0	1	Unmodified	1131.5673	0.5672715	2290	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	yes	yes	0	0	0	16	0																1	11.709	11.709	3	0.011573	4306	DP690-16	57.785	30.814			0.81915	0.96226	NaN	1	0	Median	3324800	2074500	1250300	15304	2290	14303	30301	73260;73261	73260		2	9606
VGETIIDLENR	0	1	Unmodified	1257.6565	0.65648044	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	10	0										1							17.283	17.283	2	0.0099166	12948	DP690-10	78.655	52.538			0.6383	0.78766	NaN	1	0	Median	128320000	69224000	59094000	15305	2276	14304	30302	73262	73262		1	9606
VGEVIVTKDDAMLLK	2	0	Oxidation (M)	1645.8961	0.89605879	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	1	1	8	4				1								1					15.705	15.705	3	0.0018411	10010	DP690-12	77.192	57.108			0.87056	0.94476	37.589	2	0	Median	128160000	69814000	58342000	15306	461	14305	30303;30304	73263;73264;73265	73264	538	3	9606
VGEVTYVELLMDAEGK	1	0	Unmodified	1751.8652	0.86515259	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	11	0											1						22.52	22.52	2	3.1734E-22	19912	DP690-11	252.96	209.98			0.70845	0.85743	NaN	1	0	Median	63205000	35042000	28163000	15307	849	14306	30305	73266;73267;73268;73269;73270	73267		5	9606
VGEVTYVELLMDAEGK	1	0	Oxidation (M)	1767.8601	0.86006721	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	11	0											1						21.381	21.381	2	0.0058779	18476	DP690-11	105.66	74.181			NaN	NaN	NaN	0	0	Median	25863000	0	25863000	15308	849	14306	30306	73271;73272	73271	1277	2	9606
VGFQYEGTYK	1	0	Unmodified	1190.5608	0.56078914	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	4	0				1													14.847	14.847	2	0.00014449	8379	DP690-4	204.27	154.84			0.93376	0.96388	NaN	1	0	Median	242920000	126720000	116200000	15309	469	14307	30307	73273;73274;73275;73276;73277	73275		5	9606
VGGFPNFLSNAFVSTAK	1	0	Unmodified	1754.8992	0.89917033	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	0	12.7	4.03							1								1	1	22.074	22.074	2	0.00044851	17303	DP690-15	105.65	83.978			0.80169	0.93004	8.9419	3	0	Median	58401000	32140000	26261000	15310	1983	14308	30308;30309;30310	73278;73279;73280;73281;73282;73283;73284;73285;73286;73287;73288;73289	73281		12	9606
VGGNIEVLGFNAR	0	1	Unmodified	1344.715	0.71499837	1297	Q14839;Q8TDI0	CHD4;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5	yes	no	0	0	0	10	0										1							18.123	18.123	2	0.00010281	14093	DP690-10	160.77	130.21			0.98788	1.1728	NaN	1	0	Median	230750000	116960000	113790000	15311	1297	14309	30311	73290	73290		1	9606
VGGSQPPFQGQR	0	1	Unmodified	1256.6262	0.62618337	1997	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	10	0										1							11.606	11.606	2	0.0045283	4537	DP690-10	120.31	81.502			NaN	NaN	NaN	0	0	Median	18447000	18447000	0	15312	1997	14310	30312	73291;73292	73291		2	9606
VGGTNLGAPGAFGQSPFSQPPAPPHQNTFPPR	0	1	Unmodified	3227.5901	0.59007922	1875	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	12	0												2					17.677	17.677	3	1.7069E-08	14072	DP690-12	110.7	82.076			NaN	NaN	NaN	0	0	Median	9562000	9562000	0	15313	1875	14311	30313;30314	73293;73294;73295;73296	73296		4	9606
VGGTSDVEVNEK	1	0	Unmodified	1232.5885	0.58846046	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	12	0												1					10.91	10.91	2	6.4579E-17	3390	DP690-12	302.3	266.86			0.71038	0.79162	NaN	1	0	Median	203550000	117330000	86219000	15314	461	14312	30315	73297;73298;73299;73300	73299		4	9606
VGHSELVGEIIR	0	1	Unmodified	1307.7197	0.7197494	694	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	4	0				1													15.067	15.067	3	0.003538	8636	DP690-4	75.088	75.088			0.73089	0.84228	NaN	1	0	Median	18692000	9562200	9129800	15315	694	14313	30316	73301;73302	73302		2	9606
VGIDTPDIDIHGPEGK	1	0	Unmodified	1661.8261	0.82606496	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							16.186	16.186	3	0.020417	10082	DP690-9	78.326	39.293			NaN	NaN	NaN	0	0	Median	9964200	0	9964200	15316	1145	14314	30317;30318	73303;73304;73305	73304		3	9606
VGIEAAEMLLANLR	0	1	Unmodified	1498.8177	0.81774889	85	O00442	RTCA	RNA 3'-terminal phosphate cyclase	yes	yes	0	0	0	14	0														1			23.682	23.682	2	0.0053328	20169	DP690-14	80.763	63.738			0.67446	0.84292	NaN	1	0	Median	1808500	1024200	784370	15317	85	14315	30319	73306	73306		1	9606
VGIGAFPTEQDNEIGELLQTR	0	1	Unmodified	2286.1492	0.14919002	626	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	5	0					1												21.92	21.92	2	1.9201E-07	16747	DP690-5	147.1	100.37			NaN	NaN	NaN	0	0	Median	3846900	3846900	0	15318	626	14316	30320	73307;73308	73307		2	9606
VGIIAWHPTAR	0	1	Unmodified	1219.6826	0.68257603	1980	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	12	0												1					15.051	15.051	3	0.064141	9108	DP690-12	44.612	20.523			0.67375	0.80035	NaN	1	0	Median	58235000	33812000	24423000	15319	1980	14317	30321	73309	73309		1	9606
VGILGSGDFAR	0	1	Unmodified	1090.5771	0.57710791	1455	Q658P3	STEAP3	Metalloreductase STEAP3	yes	yes	0	0	0	13	0													1				17.063	17.063	2	0.00011476	11651	DP690-13	134.05	105.13			0.49483	0.59844	NaN	1	0	Median	66555000	42766000	23789000	15320	1455	14318	30322	73310	73310		1	9606
VGINYQPPTVVPGGDLAK	1	0	Unmodified	1823.9781	0.97814893	1032;1521;1977;452;1033	P0DPH7;P0DPH8;Q6PEY2;P68363;Q71U36;Q9BQE3;P68366	TUBA3E;TUBA1B;TUBA1A;TUBA1C;TUBA4A	Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain	no	no	0	0	0	9.2	4.42		1	1	1	1	1	1	1	1			3	1	1	1	1	17.898	17.898	2	1.5995E-09	12835	DP690-14	193.15	193.15			0.80905	0.88708	16.12	12	0	Median	6254899999.999999	3440899999.9999995	2814000000	15321	452;1032;1521;1977;1033	14319	30323;30324;30325;30326;30327;30328;30329;30330;30331;30332;30333;30334;30335;30336;30337	73311;73312;73313;73314;73315;73316;73317;73318;73319;73320;73321;73322;73323;73324;73325;73326;73327;73328;73329;73330;73331;73332;73333;73334;73335;73336;73337;73338;73339;73340;73341;73342;73343;73344;73345;73346;73347;73348;73349;73350;73351;73352;73353;73354;73355;73356	73326		46	9606
VGIQQGLLSQSTR	0	1	Unmodified	1385.7627	0.76267685	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	13	0													1				15.618	15.618	2	2.9915E-08	9522	DP690-13	202.96	164.69			0.83984	0.94925	NaN	1	0	Median	282390000	154520000	127870000	15322	2045	14320	30338	73357;73358;73359;73360	73359		4	9606
VGIVAWHPTAR	0	1	Unmodified	1205.6669	0.66692597	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	13	0													1				14.262	14.262	3	0.00040117	7697	DP690-13	105.17	105.17			0.8947	0.99877	NaN	1	0	Median	357830000	189980000	167850000	15323	2395	14321	30339	73361;73362;73363;73364;73365	73363		5	9606
VGKDELFALEQSCAQVVLQAANER	1	1	Unmodified	2674.3385	0.33846413	1366	Q16658	FSCN1	Fascin	yes	yes	0	0	1	12	0												1					21.376	21.376	3	0.0014494	17581	DP690-12	92.41	58.615			NaN	NaN	NaN	0	0	Median	0	0	0	15324	1366	14322	30340	73366	73366		1	9606
VGKEDSSSAEFLEK	2	0	Unmodified	1524.7308	0.7307676	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	1	4	0				1													12.798	12.798	3	9.7272E-05	5654	DP690-4	115.06	78.619			0.83147	0.86359	NaN	1	0	Median	27969000	14823000	13146000	15325	1227	14323	30341	73367;73368;73369	73369		3	9606
VGLNAQAACAPR	0	1	Unmodified	1226.619	0.6189895	781	P48681	NES	Nestin	yes	yes	0	0	0	11.5	1.5										1			1				12.519	12.519	2	4.7548E-05	5982	DP690-10	171.73	123.17			0.70189	0.86029	0.48634	2	0	Median	176780000	102550000	74224000	15326	781	14324	30342;30343	73370;73371;73372;73373;73374;73375;73376	73372		7	9606
VGLNWLALVHK	1	0	Unmodified	1248.7343	0.73427725	2121	Q9H4L7	SMARCAD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	yes	yes	0	0	0	11	0											1						19.613	19.613	3	0.0024681	16068	DP690-11	83.862	72.329			0.8173	0.99705	NaN	1	0	Median	28174000	15190000	12984000	15327	2121	14325	30344	73377;73378;73379;73380	73377		4	9606
VGLQVVAVK	1	0	Unmodified	911.5804	0.58040237	461	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	8	4				1								1					14.917	14.917	2	0.00033379	8427	DP690-4	158.36	158.36			0.97958	1.0701	36.974	2	0	Median	245220000	132440000	112780000	15328	461	14326	30345;30346	73381;73382;73383;73384;73385;73386;73387	73386		7	9606
VGLSGAPADACSTAQK	1	0	Unmodified	1531.7301	0.73005609	1703	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	yes	yes	0	0	0	13	0													2				12.627	12.627	2	6.5388E-06	5464	DP690-13	130.44	106.16			0.74559	0.86194	NaN	1	0	Median	58457000	31468000	26989000	15329	1703	14327	30347;30348	73388;73389	73388		2	9606
VGLTNYAAAYCTGLLLAR	0	1	Unmodified	1926.0033	0.003317824	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	14	0														1			21.122	21.122	2	5.0978E-13	17020	DP690-14	236.42	217.14			0.87076	1.0547	NaN	1	0	Median	41323000	20046000	21278000	15330	757	14328	30349	73390;73391;73392;73393;73394;73395	73392		6	9606
VGMADANSPPKPLSKPR	2	1	Oxidation (M)	1779.9302	0.93015288	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	1	2	9	0									1								10.266	10.266	4	0.0010803	2484	DP690-9	78.902	60.764			0.59729	0.63908	NaN	1	0	Median	3019200	1706600	1312600	15331	591	14329	30350	73396	73396	781	1	9606
VGMIPVPYVEK	1	0	Oxidation (M)	1246.6631	0.66314572	753	P46109	CRKL	Crk-like protein	yes	yes	0	1	0	6.33	0.471						2	1										17.096	17.096	2	0.0016212	11959	DP690-6	106.88	86.043			0.70436	0.7476	4.5896	3	0	Median	515840000	299810000	216030000	15332	753	14330	30351;30352;30353	73397;73398;73399;73400;73401	73398	1116	5	9606
VGMIPVPYVEK	1	0	Unmodified	1230.6682	0.6682311	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	6	0						1											18.219	18.219	2	0.0021587	11914	DP690-6	96.665	64.794			0.71441	0.76706	NaN	1	0	Median	113700000	65405000	48290000	15333	753	14330	30354	73402;73403;73404	73403		3	9606
VGMVETNSQDRPVDDVK	1	1	Oxidation (M)	1903.8946	0.89455524	2464	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	1	1	13.3	3.77								1								2	11.248	11.248	2;3	1.1236E-06	3894	DP690-16	157.33	117.32			0.79519	0.84684	18.95	3	0	Median	95762000	51732000	44030000	15334	2464	14331	30355;30356;30357	73405;73406;73407;73408;73409;73410;73411;73412;73413;73414;73415;73416	73412	2910	12	9606
VGMVETNSQDRPVDDVK	1	1	Unmodified	1887.8996	0.89964061	2464	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	0	1	8	0								1									12.718	12.718	3	0.066455	5554	DP690-8	71.98	18.811			NaN	NaN	NaN	0	0	Median	1203200	1203200	0	15335	2464	14331	30358	73417	73417		1	9606
VGNLGLATSFFNER	0	1	Unmodified	1523.7732	0.77324153	96	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	10.4	2.97				1					1		2	2		1			20.283	20.283	2	5.0802E-74	16957	DP690-11	293.88	227.69			0.89372	1.0219	33.254	3	0	Median	577930000	318670000	259260000	15336	96	14332	30359;30360;30361;30362;30363;30364;30365	73418;73419;73420;73421;73422;73423;73424;73425;73426;73427;73428;73429;73430;73431	73418		14	9606
VGNNFHNLQEIR	0	1	Unmodified	1439.727	0.72696004	2400	Q9UM13	ANAPC10	Anaphase-promoting complex subunit 10	yes	yes	0	0	0	15	0															1		13.51	13.51	3	1.849E-05	6765	DP690-15	128.88	107.87			1.064	1.1935	NaN	1	0	Median	67720000	35519000	32200000	15337	2400	14333	30366	73432;73433;73434;73435	73435		4	9606
VGNVGQTNYAASK	1	0	Unmodified	1307.647	0.64697839	1770	Q92506	HSD17B8	Estradiol 17-beta-dehydrogenase 8	yes	yes	0	0	0	15	0															1		10.792	10.792	2	0.00015196	3318	DP690-15	121.29	88.395			0.75267	0.88583	NaN	1	0	Median	8808000	4640000	4168000	15338	1770	14334	30367	73436	73436		1	9606
VGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFR	1	1	Unmodified	3633.6092	0.6091555	2375	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	1	11	0											1						14.889	14.889	3	1.8454E-11	9375	DP690-11	90.322	90.322			0.35094	0.43749	NaN	1	0	Median	39949000	25564000	14384000	15339	2375	14335	30368	73437;73438	73438		2	9606
VGPGAGESPGTPPFR	0	1	Unmodified	1424.7048	0.70482762	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0										1							14.313	14.313	2	0.01105	8548	DP690-10	72.34	72.34			0.87764	1.0916	NaN	1	0	Median	82178000	33066000	49112000	15340	1724	14336	30369	73439;73440;73441;73442	73440		4	9606
VGPSSGDAPEPSSR	0	1	Unmodified	1341.6161	0.61607219	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	12	2.94									1		1					1	10.611	10.611	2	2.9264E-06	3073	DP690-16	185.99	142.7			0.63916	0.75718	11.286	2	0	Median	116210000	73370000	42843000	15341	1573	14337	30370;30371;30372	73443;73444;73445;73446;73447;73448;73449	73444		7	9606
VGQAVDVVGQAGKPK	2	0	Unmodified	1451.8096	0.80962704	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	1	3	0			2														11.62	11.62	2;3	0.00031281	4160	DP690-3	89.992	89.992			1.0389	1.1299	17.567	2	0	Median	42273000	19481000	22791000	15342	1190	14338	30373;30374	73450;73451;73452;73453;73454	73451		4	9606
VGQEIEVRPGIVSK	1	1	Unmodified	1509.8515	0.85149185	714	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	yes	yes	0	0	1	13	0													1				13.626	13.626	3	9.3335E-07	6801	DP690-13	188.09	143.48			0.77966	0.87482	NaN	1	0	Median	112690000	56974000	55713000	15343	714	14339	30375	73455;73456;73457;73458	73456		4	9606
VGQTAFDVADEDILGYLEELQK	1	0	Unmodified	2452.201	0.20095082	126	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	11	0											2						26.414	26.414	2	2.0626E-08	24475	DP690-11	168.05	142.07			NaN	NaN	NaN	0	0	Median	595520	0	595520	15344	126	14340	30376;30377	73459;73460	73460		2	9606
VGRPSNIGQAQPIIDQLAEEAR	0	2	Unmodified	2361.2401	0.24007071	2348	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	1	12	0												1					18.644	18.644	3	0.00036816	14120	DP690-12	92.8	64.475			0.58491	0.6632	NaN	1	0	Median	44134000	28668000	15466000	15345	2348	14341	30378	73461;73462	73461		2	9606
VGSAADIPINISETDLSLLTATVVPPSGR	0	1	Unmodified	2892.5444	0.54441738	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8.9	2.39		1							4	4	1						24.95	24.95	2;3	3.1347E-34	22948	DP690-10	201.22	189.8			0.62554	0.78132	15.452	6	0	Median	188910000	119350000	69560000	15346	549	14342	30379;30380;30381;30382;30383;30384;30385;30386;30387;30388	73463;73464;73465;73466;73467;73468;73469;73470;73471;73472;73473;73474;73475;73476;73477;73478;73479;73480;73481;73482;73483;73484;73485;73486;73487;73488;73489;73490;73491;73492;73493;73494;73495;73496;73497;73498;73499;73500	73467		38	9606
VGSAADIPINISETDLSLLTATVVPPSGREEPCLLK	1	1	Unmodified	3761.9761	0.97610661	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10	0.707									1	2	1						23.883	23.883	3	8.5758E-16	21748	DP690-10	134.46	134.46			0.56814	0.70971	12.154	3	0	Median	111760000	72822000	38935000	15347	549	14343	30389;30390;30391;30392	73501;73502;73503;73504;73505;73506;73507;73508;73509;73510;73511	73501		11	9606
VGSLDNVGHLPAGGAVK	1	0	Unmodified	1589.8526	0.85255449	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	11.6	1.85										2	1	1			1		14.245	14.245	2;3	8.9822E-07	7690	DP690-15	137.73	114.58			0.68034	0.76006	9.308	5	0	Median	2485400000	1420500000	1064899999.9999999	15348	604	14344	30393;30394;30395;30396;30397	73512;73513;73514;73515;73516;73517;73518;73519;73520;73521;73522;73523;73524;73525;73526	73523		15	9606
VGSLSWNSYILSSGSR	0	1	Unmodified	1711.8529	0.85294842	1163	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	0	0	12	0												1					19.607	19.607	2	0.00014586	15375	DP690-12	147.58	90.641			NaN	NaN	NaN	0	0	Median	10238000	0	10238000	15349	1163	14345	30398	73527	73527		1	9606
VGSTAVQVTSAER	0	1	Unmodified	1303.6732	0.67319314	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	5.75	3.77		2							1	1							12.042	12.042	2	0.00016749	5237	DP690-10	149.33	94.22			0.76587	0.95773	10.907	2	0	Median	73250000	38675000	34575000	15350	550	14346	30399;30400;30401;30402	73528;73529;73530;73531;73532;73533;73534	73528		7	9606
VGSVLQEGCGK	1	0	Unmodified	1132.5547	0.55465791	632	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	12	0												1					11.824	11.824	2	0.00010876	4606	DP690-12	138.66	87.855			0.85625	1.0293	NaN	1	0	Median	20110000	11143000	8967100	15351	632	14347	30403	73535;73536	73536		2	9606
VGTAQLALVAR	0	1	Unmodified	1097.6557	0.65569258	2350	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	12	0												1					15.64	15.64	2	7.3069E-05	9900	DP690-12	127.68	108.7			1.0476	1.2449	NaN	1	0	Median	60737000	27491000	33246000	15352	2350	14348	30404	73537;73538	73537		2	9606
VGTFFSEVKPAGPTVEQQGEMAR	1	1	Oxidation (M)	2480.2006	0.20057366	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	1	1	11	0											1						16.025	16.025	3	0.00032759	10882	DP690-11	97.776	83.369			0.75604	0.83806	NaN	1	0	Median	214270000	124470000	89802000	15353	891	14349	30405	73539;73540	73540	1354	2	9606
VGTFFSEVKPAGPTVEQQGEMAR	1	1	Unmodified	2464.2057	0.20565904	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	1	11	0											1						16.622	16.622	3	1.7798E-20	11844	DP690-11	191.97	173.42			0.87869	0.97478	NaN	1	0	Median	211900000	122790000	89113000	15354	891	14349	30406	73541;73542;73543;73544;73545	73543		5	9606
VGTGESNHDSISSSK	1	0	Unmodified	1503.6801	0.68012901	2572				yes	yes	0	0	0	16	0																1	11.062	11.062	2	0.0010058	3666	DP690-16	97.813	97.813	+		0.95609	1.1135	NaN	1	0	Median	3093000	1826400	1266600	15355	2572	14350	30407	73546;73547	73547		2	9606
VGVEASEETPQTSSSSAR	0	1	Unmodified	1820.8388	0.8388145	1512	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	10	0										2							11.952	11.952	2	9.8117E-05	5059	DP690-10	160.84	116.95			NaN	NaN	NaN	0	0	Median	0	0	0	15356	1512	14351	30408;30409	73548;73549	73549		2	9606
VGVEVPDVNIEGPEGK	1	0	Unmodified	1636.8308	0.83081599	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								17.801	17.801	2	6.5666E-07	12116	DP690-9	147.58	147.58			0.66481	0.8043	NaN	1	0	Median	35257000	19805000	15452000	15357	1145	14352	30410	73550;73551;73552;73553	73552		4	9606
VGVGHAGEWAR	0	1	Unmodified	1137.5679	0.56794021	614	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	14	0														1			11.561	11.561	3	0.0016362	4155	DP690-14	88.596	61.923			0.73414	0.91878	NaN	1	0	Median	6181000	2698400	3482700	15358	614	14353	30411	73554;73555;73556;73557	73554		4	9606
VGVGTCGIADKPMTQYQDTSK	2	0	Oxidation (M)	2271.0511	0.051132232	281	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	1	1	11	4							1								1		12.973	12.973	3	6.164E-05	5952	DP690-15	113.23	93.442			0.79538	0.88038	10.21	2	0	Median	191860000	106750000	85109000	15359	281	14354	30412;30413	73558;73559;73560;73561;73562;73563	73559	298	6	9606
VGVGTCGIADKPMTQYQDTSK	2	0	Unmodified	2255.0562	0.05621761	281	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	1	15	0															1		14.196	14.196	3	7.1316E-07	7691	DP690-15	136.85	122.74			0.70204	0.80368	NaN	1	0	Median	27585000	15841000	11744000	15360	281	14354	30414	73564;73565;73566	73564		3	9606
VGVKEELLAVGK	2	0	Unmodified	1240.7391	0.73908786	749	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	10	0										1							14.969	14.969	3	0.00040348	9460	DP690-10	105.36	85.228			0.85967	1.064	NaN	1	0	Median	89634000	45456000	44178000	15361	749	14355	30415	73567;73568;73569;73570	73567		4	9606
VGVLAASMEAK	1	0	Oxidation (M)	1090.5692	0.56924534	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	1	0	11	0											1						12.465	12.465	2	0.034624	5665	DP690-11	72.325	32.258			0.91506	1.0867	NaN	1	0	Median	109640000	53365000	56275000	15362	2340	14356	30416	73571	73571	2778	1	9606
VGVLAASMEAK	1	0	Unmodified	1074.5743	0.57433072	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	11	0											2						14.667	14.667	2	0.047836	8983	DP690-11	88.496	46.843			NaN	NaN	NaN	0	0	Median	51226000	0	51226000	15363	2340	14356	30417;30418	73572;73573	73573		2	9606
VGVTEGCDPTR	0	1	Unmodified	1189.5397	0.53973612	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							11.425	11.425	2	0.00019093	3508	DP690-2	145.72	90.193			1.0328	1.0785	NaN	1	0	Median	140770000	133720000	7050600	15364	1270	14357	30419;30420;30421	73574;73575;73576;73577;73578;73579	73578		6	9606
VGWEQLLTTIAR	0	1	Unmodified	1385.7667	0.76669959	476;186	P12814;O43707	ACTN1;ACTN4	Alpha-actinin-1;Alpha-actinin-4	no	no	0	0	0	11	0											2						22.989	22.989	2	6.0131E-05	20529	DP690-11	184.71	142.11			1.3022	1.5623	NaN	1	0	Median	61148000	23139000	38009000	15365	476;186	14358	30422;30423	73580;73581;73582;73583	73581		4	9606
VGWGAVYTLSEFTHR	0	1	Unmodified	1721.8526	0.85255449	1868	Q96HA8	WDYHV1	Protein N-terminal glutamine amidohydrolase	yes	yes	0	0	0	7	0							1										19.894	19.894	3	7.56E-06	14499	DP690-7	142.39	114.46			1.1098	1.2848	NaN	1	0	Median	14431000	7420400	7011100	15366	1868	14359	30424	73584;73585;73586	73584		3	9606
VGYTPDWIFLLR	0	1	Unmodified	1478.7922	0.79218606	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	10	0										1							23.6	23.6	2	0.0003611	21498	DP690-10	116.52	82.311			0.88272	1.1029	NaN	1	0	Median	16525000	9952000	6572700	15367	1075	14360	30425	73587;73588;73589;73590	73588		4	9606
VHALPPSLIPLVWDFGQLSDVAEK	1	0	Unmodified	2630.4108	0.41082443	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								24.025	24.025	3	0.00090234	19520	DP690-9	76.156	54.99			NaN	NaN	NaN	0	0	Median	764260	764260	0	15368	1453	14361	30426	73591	73591		1	9606
VHAPGLNLSGVGGK	1	0	Unmodified	1304.7201	0.72008375	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								14.135	14.135	2	0.024416	7362	DP690-9	67.214	52.754			0.6465	0.8241	NaN	1	0	Median	8818900	4537900	4281000	15369	1145	14362	30427	73592;73593;73594	73594		3	9606
VHCCPHGAFCDLVHTR	0	1	Unmodified	1964.8556	0.8556245	611	P28799	GRN	Granulins;Acrogranin;Paragranulin;Granulin-1;Granulin-2;Granulin-3;Granulin-4;Granulin-5;Granulin-6;Granulin-7	yes	yes	0	0	0	8	0								1									12.528	12.528	4	0.00059549	5271	DP690-8	86.539	65.701			3.2855	3.7885	NaN	1	0	Median	8969600	2069400	6900200	15370	611	14363	30428	73595;73596	73595		2	9606
VHDEGVWALQVNDAFTHVYSGGR	0	1	Unmodified	2556.2146	0.21458424	1708	Q8TAF3	WDR48	WD repeat-containing protein 48	yes	yes	0	0	0	11	0											1						19.309	19.309	4	0.015457	15697	DP690-11	66.845	42.448			NaN	NaN	NaN	0	0	Median	14137000	14137000	0	15371	1708	14364	30429	73597	73597		1	9606
VHEENTTIEELEALGESLGK	1	0	Unmodified	2197.075	0.075022022	1949	Q99633	PRPF18	Pre-mRNA-splicing factor 18	yes	yes	0	0	0	14	0														1			21.752	21.752	3	7.0403E-07	17817	DP690-14	108.45	91.792			0.78017	0.92344	NaN	1	0	Median	11412000	5978600	5433800	15372	1949	14365	30430	73598;73599;73600	73598		3	9606
VHELNEEIGK	1	0	Unmodified	1166.5932	0.5931519	2185;2457	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	0	0	0	9.5	3.5						2							2				11.117	11.117	2;3	0.00015467	3532	DP690-13	134.84	91.21			0.78992	0.91664	NaN	1	0	Median	39217000	20733000	18483000	15373	2185;2457	14366	30431;30432;30433;30434	73601;73602;73603;73604;73605;73606;73607;73608	73602		8	9606
VHELQGNAPSDPDAVSAEEALK	1	0	Unmodified	2276.0921	0.092069069	306	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	3	0			1														14.974	14.974	3	0.00011484	8623	DP690-3	109.23	83.312			1.012	1.0709	NaN	1	0	Median	9692300	4631600	5060700	15374	306	14367	30435	73609;73610;73611;73612;73613	73611		5	9606
VHGGTTADMIYSR	0	1	Oxidation (M)	1422.6562	0.65616287	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	1	0	9	0									1								10.793	10.793	3	0.0025514	3152	DP690-9	81.239	53.685			0.76595	0.9575	NaN	1	0	Median	10161000	6097000	4064300	15375	1453	14368	30436	73614;73615	73614	2158	2	9606
VHGPGIQSGTTNKPNK	2	0	Unmodified	1633.8536	0.85361712	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	8.25	3.63		2								4	2						10.203	10.203	2;3;4	2.4368E-07	2488	DP690-10	151.3	130.52			0.67779	0.7594	16.151	5	0	Median	12916000000	7594099999.999999	5322000000	15376	549	14369	30437;30438;30439;30440;30441;30442;30443;30444	73616;73617;73618;73619;73620;73621;73622;73623;73624;73625;73626;73627;73628;73629;73630;73631;73632;73633;73634;73635	73620		20	9606
VHGPGIQSGTTNKPNKFTVETR	2	1	Unmodified	2367.2295	0.22950602	549	P21333	FLNA	Filamin-A	yes	yes	0	0	2	10	0										1							11.127	11.127	5	0.0019311	3879	DP690-10	68.168	52.072			0.78721	0.8983	NaN	1	0	Median	174690000	100080000	74613000	15377	549	14370	30445	73636;73637	73636		2	9606
VHGSSEAFWILVEDVDSEVILHHEYFLLK	1	0	Unmodified	3410.7187	0.71869335	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							23.98	23.98	5	0.065025	21978	DP690-10	22.888	22.888			0.58538	0.70764	NaN	1	0	Median	4790900	2618800	2172100	15378	269	14371	30446	73638	73638		1	9606
VHIEIGPDGR	0	1	Unmodified	1091.5724	0.57235688	639;856;901	P31943;P52597;P55795	HNRNPH1;HNRNPF;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	11.6	4.06					3	1		1					3	3	4	1	12.896	12.896	2;3	2.9577E-05	5851	DP690-14	175.91	152.86			0.80229	0.9266	15.23	10	0	Median	4036799999.9999995	2271200000	1765599999.9999998	15379	639;856;901	14372	30447;30448;30449;30450;30451;30452;30453;30454;30455;30456;30457;30458;30459;30460;30461;30462	73639;73640;73641;73642;73643;73644;73645;73646;73647;73648;73649;73650;73651;73652;73653;73654;73655;73656;73657;73658;73659;73660;73661;73662;73663;73664;73665;73666;73667;73668;73669;73670;73671;73672;73673;73674	73653		36	9606
VHIGQVIMSIR	0	1	Oxidation (M)	1267.7071	0.70707622	601	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	1	0	15	0															2		15.224	15.224	2;3	0.001787	8959	DP690-15	89.561	74.184			0.98904	1.0537	2.4515	2	0	Median	826310000	408860000	417450000	15380	601	14373	30463;30464	73675;73676;73677;73678;73679;73680;73681;73682;73683	73677	807	9	9606
VHIPNDDAQFDASHCDSDKGEFGGFGSVTGK	2	0	Unmodified	3293.432	0.43198317	1360	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	1	13	0													1				15.978	15.978	4	1.425E-05	10097	DP690-13	72.051	61.629			0.53042	0.59963	NaN	1	0	Median	36547000	21115000	15432000	15381	1360	14374	30465	73684	73684		1	9606
VHLTPYTVDSPICDFLELQR	0	1	Unmodified	2402.194	0.19403172	1641	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	11	0											1						21.823	21.823	3	0.00010867	19042	DP690-11	104.84	104.84			0.93669	1.151	NaN	1	0	Median	14382000	5557500	8824300	15382	1641	14375	30466	73685	73685		1	9606
VHLVGIDIFTGK	1	0	Unmodified	1297.7394	0.73942221	1021	P63241;Q6IS14;Q9GZV4	EIF5A;EIF5AL1;EIF5A2	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2	yes	no	0	0	0	16	0																2	18.858	18.858	2;3	0.00013389	13354	DP690-16	169.76	161.07			0.8938	1.0207	6.218	2	0	Median	90463000	47527000	42936000	15383	1021	14376	30467;30468	73686;73687;73688;73689;73690;73691;73692;73693	73689		8	9606
VHLVGIDIFTGKK	2	0	Unmodified	1425.8344	0.83438523	1021	P63241;Q6IS14;Q9GZV4	EIF5A;EIF5AL1;EIF5A2	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2	yes	no	0	0	1	12	4								1								1	16.772	16.772	3	0.0022025	10816	DP690-16	76.868	66.796			0.85657	0.9879	6.4981	2	0	Median	34791000	19125000	15666000	15384	1021	14377	30469;30470	73694;73695;73696;73697	73695		4	9606
VHMFEAHSDYIR	0	1	Oxidation (M)	1519.6878	0.68779734	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	1	0	3	0			2														11.722	11.722	3;4	0.011516	4235	DP690-3	68.515	48.506			2.4299	2.7491	NaN	1	0	Median	31185000	8474200	22711000	15385	670	14378	30471;30472	73698;73699;73700;73701;73702;73703	73699	974	6	9606
VHMFEAHSDYIR	0	1	Unmodified	1503.6929	0.69288272	670	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	3	0			1														13.378	13.378	3	7.8289E-05	6536	DP690-3	120.86	109.27			1.99	2.2774	NaN	1	0	Median	23411000	7261900	16149000	15386	670	14378	30473	73704;73705;73706	73705		3	9606
VHNEGLPAPIVR	0	1	Unmodified	1300.7252	0.72516913	23	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	3.11	1.1	1	2	1	5													13.341	13.341	2;3	0.0014883	5121	DP690-1	82.494	46.21		+	NaN	NaN	NaN	0	0	Median	47441000	47441000	0	15387	23	14379	30474;30475;30476;30477;30478;30479;30480;30481;30482	73707;73708;73709;73710;73711;73712;73713;73714;73715;73716;73717;73718	73708		12	
VHNLITDFLALMPMK	1	0	Oxidation (M)	1757.9208	0.92083375	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	1	0	10	0										1							23.995	23.995	3	0.0069644	21922	DP690-10	69.045	45.449			0.6374	0.7725	NaN	1	0	Median	5256300	3272400	1983800	15388	1783	14380	30483	73719;73720;73721;73722	73719	2352	4	9606
VHNNIVYNEYISHR	0	1	Unmodified	1756.8645	0.86451616	229	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	13	0													2				13.47	13.47	3;4	7.8997E-06	6633	DP690-13	122.46	104.44			0.89736	1.0318	12.512	2	0	Median	407240000	214630000	192610000	15389	229	14381	30484;30485	73723;73724;73725	73723		2	9606
VHPEIINENGNPSYK	1	0	Unmodified	1709.8373	0.83729835	345	O95881	TXNDC12	Thioredoxin domain-containing protein 12	yes	yes	0	0	0	13.3	3.77								1								2	12.797	12.797	2;3	6.8715E-06	5668	DP690-16	139.66	122.94			0.64862	0.7346	4.5233	2	0	Median	48516000	30062000	18454000	15390	345	14382	30486;30487;30488	73726;73727;73728;73729;73730;73731;73732;73733;73734;73735	73727		10	9606
VHQLYETIQR	0	1	Unmodified	1285.6779	0.67788459	1225	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	13	0													1				12.566	12.566	3	0.0046662	5397	DP690-13	65.719	45.513			0.99737	1.2254	NaN	1	0	Median	27123000	13798000	13325000	15391	1225	14383	30489	73736;73737	73736		2	9606
VHQVTPQTHFIS	0	0	Unmodified	1392.715	0.71499837	2072	Q9GZP4	PITHD1	PITH domain-containing protein 1	yes	yes	0	0	0	7	0							2										12.756	12.756	2;3	0.0040937	5479	DP690-7	123.86	85.588			NaN	NaN	NaN	0	0	Median	0	0	0	15392	2072	14384	30490;30491	73738;73739;73740	73738		3	9606
VHSDFTAAATR	0	1	Unmodified	1174.5731	0.57308516	240	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	3	0			1														10.67	10.67	2	0.024686	2995	DP690-3	95.775	49.866			NaN	NaN	NaN	0	0	Median	9853800	0	9853800	15393	240	14385	30492	73741	73741		1	9606
VHSPPASLVPR	0	1	Unmodified	1158.6509	0.65094155	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	4	0				1													12.157	12.157	3	0.038012	4855	DP690-4	54.343	23.519			NaN	NaN	NaN	0	0	Median	701910	701910	0	15394	2000	14386	30493	73742	73742		1	9606
VHSPSGALEECYVTEIDQDK	1	0	Unmodified	2276.0267	0.026691621	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	0										1							16.66	16.66	3	1.2751E-06	11953	DP690-10	127.32	106.26			0.76666	0.93172	NaN	1	0	Median	185200000	100340000	84856000	15395	549	14387	30494	73743;73744;73745;73746;73747	73744		5	9606
VHSPSGALEECYVTEIDQDKYAVR	1	1	Unmodified	2765.2967	0.29665889	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	9.12	2.85		1							2	3	1	1					19.064	19.064	3;4	2.4016E-38	11968	DP690-10	228.38	207.92			0.73392	0.78212	11.185	8	0	Median	4420500000	2518800000	1901699999.9999998	15396	549	14388	30495;30496;30497;30498;30499;30500;30501;30502	73748;73749;73750;73751;73752;73753;73754;73755;73756;73757;73758;73759;73760;73761;73762;73763;73764;73765;73766;73767;73768;73769;73770;73771;73772;73773;73774;73775;73776;73777	73748		30	9606
VHSPSGAVEECHVSELEPDKYAVR	1	1	Unmodified	2694.2708	0.27077849	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										2							13.926	13.926	4;5	7.4923E-07	7958	DP690-10	136.53	124.67			0.69255	0.77164	4.4197	2	0	Median	950250000	572950000	377290000	15397	250	14389	30503;30504	73778;73779;73780;73781;73782;73783;73784	73780		7	9606
VHSVAWSCDGR	0	1	Unmodified	1272.567	0.56695393	1882	Q96J01	THOC3	THO complex subunit 3	yes	yes	0	0	0	14	0														1			11.412	11.412	3	0.002968	3979	DP690-14	81.017	81.017			0.78626	0.95344	NaN	1	0	Median	27816000	14156000	13660000	15398	1882	14390	30505	73785;73786;73787	73787		3	9606
VHTPSGAVEECYVSELDSDKHTIR	1	1	Unmodified	2728.2763	0.2762578	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	8.67	3.04		1							1	3	1						15.1	15.1	4;5	5.406E-16	9595	DP690-10	173.36	158.04			0.88806	1.0022	7.9529	4	0	Median	1151100000	732240000	418890000	15399	1270	14391	30506;30507;30508;30509;30510;30511	73788;73789;73790;73791;73792;73793;73794;73795;73796;73797;73798;73799	73788		12	9606
VHTVMTLEQQDMVCYTAQTLVR	0	1	2 Oxidation (M)	2654.2502	0.25024275	1169	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	2	0	14	0														1			16.46	16.46	3	1.8508E-05	10900	DP690-14	124.08	109.63			0.95358	1.1564	NaN	1	0	Median	24967000	12437000	12531000	15400	1169	14392	30512	73800;73801;73802;73803;73804;73805;73806	73800	1818;1819	7	9606
VHTVVDRPQQPMTHR	0	2	Oxidation (M)	1815.9162	0.91623415	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	1	1	3	0			1														10.232	10.232	4	0.064598	2408	DP690-3	42.426	25.932			0.88448	0.91497	NaN	1	0	Median	21959000	11486000	10473000	15401	342	14393	30513	73807;73808	73807		2	9606
VHTVVDRPQQPMTHR	0	2	Unmodified	1799.9213	0.92131953	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	1	4	0				1													10.234	10.234	4	6.4874E-05	2543	DP690-4	116.98	116.98			0.87961	0.92165	NaN	1	0	Median	12672000	6775900	5896300	15402	342	14393	30514	73809;73810	73809		2	9606
VHVGDEDFVHLR	0	1	Unmodified	1421.7052	0.70516197	364	P04080	CSTB	Cystatin-B	yes	yes	0	0	0	8	0								1									14.431	14.431	3	1.5819E-05	7612	DP690-8	136.96	110.3			0.79989	0.80293	NaN	1	0	Median	185150000	99974000	85180000	15403	364	14394	30515	73811;73812;73813;73814;73815	73812		5	9606
VHVQFFDDSPTR	0	1	Unmodified	1446.6892	0.68917755	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	10	0										1							15.301	15.301	2	0.064125	10063	DP690-10	57.347	29.605			0.95571	1.1926	NaN	1	0	Median	69097000	34547000	34550000	15404	858	14395	30516	73816	73816		1	9606
VHVQPAVDTSGVK	1	0	Unmodified	1335.7147	0.71466402	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	8.86	3		1							3	1	1	1					11.312	11.312	2;3	3.2845E-05	4051	DP690-10	141.88	100.43			0.87081	1.0697	14.346	6	0	Median	242860000	137410000	105450000	15405	1270	14396	30517;30518;30519;30520;30521;30522;30523	73817;73818;73819;73820;73821;73822;73823;73824;73825;73826;73827;73828;73829;73830;73831;73832;73833;73834;73835;73836;73837;73838;73839	73817		23	9606
VHYENNSPFLTITSMTR	0	1	Unmodified	2008.9677	0.9676606	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												2					18.274	18.274	2;3	5.7298E-05	13545	DP690-12	117.53	94.357			0.70516	0.82542	NaN	1	0	Median	102100000	63230000	38869000	15406	375	14397	30524;30525	73840;73841;73842	73841		3	9606
VHYENNSPFLTITSMTR	0	1	Oxidation (M)	2024.9626	0.96257522	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	1	0	12	0												3					16.468	16.468	2;3	0.001846	11045	DP690-12	126.42	102.52			NaN	NaN	NaN	0	0	Median	60786000	6735400	54050000	15407	375	14397	30526;30527;30528	73843;73844;73845	73845	400	3	9606
VHYETALAESEKK	2	0	Unmodified	1503.7569	0.75692277	1102	Q03001	DST	Dystonin	yes	yes	0	0	1	9	0									1								10.763	10.763	3	1.4677E-05	3149	DP690-9	134.18	90.385			0.82214	0.9819	NaN	1	0	Median	13558000	6817900	6739800	15408	1102	14398	30529	73846;73847;73848;73849	73847		4	9606
VIAALLQTMEDQGNQR	0	1	Oxidation (M)	1801.8992	0.89924668	82	O00410	IPO5	Importin-5	yes	yes	0	1	0	3.5	0.5			1	1													16.273	16.273	2	1.3445E-08	10279	DP690-3	184.44	153.22			0.98387	1.085	NaN	1	0	Median	47339000	24363000	22976000	15409	82	14399	30530;30531	73850;73851;73852;73853;73854;73855	73851	98	6	9606
VIAALLQTMEDQGNQR	0	1	Unmodified	1785.9043	0.90433206	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			1														19.651	19.651	2	1.0100000000000001E-25	14778	DP690-3	214.26	152.5			NaN	NaN	NaN	0	0	Median	6359900	0	6359900	15410	82	14399	30532	73856;73857	73857		2	9606
VIAINVDDPDAANYNDINDVKR	1	1	Unmodified	2443.1979	0.19793112	1320	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	1	6	0						1											16.887	16.887	3	6.5875E-16	10411	DP690-6	175.56	148.72			0.79883	0.89525	NaN	1	0	Median	6049300	3563700	2485500	15411	1320	14400	30533	73858;73859;73860;73861;73862	73861		5	9606
VIAPNPAQLQGQR	0	1	Unmodified	1390.7681	0.76809658	1763	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	12	0												1					14.276	14.276	2	0.00022615	7928	DP690-12	117.81	117.81			0.66177	0.78434	NaN	1	0	Median	40967000	25044000	15922000	15412	1763	14401	30534	73863;73864;73865;73866	73863		4	9606
VIAQLSECEK	1	0	Unmodified	1175.5856	0.58562368	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	10	0										1							12.988	12.988	2	0.030751	6551	DP690-10	92.838	38.421			NaN	NaN	NaN	0	0	Median	60785000	60785000	0	15413	1794	14402	30535	73867	73867		1	9606
VIAQQVQLQQQQEQVR	0	1	Unmodified	1922.0334	0.033372399	1087	Q01664	TFAP4	Transcription factor AP-4	yes	yes	0	0	0	13.5	0.5													1	1			13.982	13.982	2	9.7849E-33	7478	DP690-14	308.91	308.91			0.76141	0.92258	NaN	1	0	Median	38958000	23845000	15114000	15414	1087	14403	30536;30537	73868;73869;73870;73871;73872;73873;73874	73874		7	9606
VICAEEPYICK	1	0	Unmodified	1380.6418	0.64175835	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	3.5	0.5			1	1													14.903	14.903	2	9.7672E-05	8560	DP690-3	131.44	119.57			0.80447	0.86401	0.1517	2	0	Median	57475000	31775000	25700000	15415	813	14404	30538;30539	73875;73876;73877;73878;73879;73880	73878		6	9606
VIDDTNITR	0	1	Unmodified	1045.5404	0.54038805	388	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	13	0													1				12.516	12.516	2	0.00070003	5262	DP690-13	139.97	96.847			0.78895	0.92284	NaN	1	0	Median	146950000	76203000	70742000	15416	388	14405	30540	73881;73882;73883;73884	73883		4	9606
VIDGLETLDELEKLPVNEK	2	0	Unmodified	2153.1467	0.1467304	2103	Q9H2H8	PPIL3	Peptidyl-prolyl cis-trans isomerase-like 3	yes	yes	0	0	1	16	0																1	20.798	20.798	3	0.00023989	15606	DP690-16	97.095	79.74			0.88361	1.0121	NaN	1	0	Median	4698000	2505900	2192100	15417	2103	14406	30541	73885;73886	73885		2	9606
VIDPATATSVDLR	0	1	Unmodified	1356.7249	0.72489436	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	8	4				1								1					16.403	16.403	2	0.00015196	10946	DP690-12	121.29	85.776			1.0511	1.2055	36.034	2	0	Median	106370000	50759000	55614000	15418	827	14407	30542;30543	73887;73888;73889;73890;73891;73892	73888		6	9606
VIDPVTGKPCAGTTYLESPLSSETTQLSK	2	0	Unmodified	3078.5431	0.54309675	2444	Q9Y2R5	MRPS17	28S ribosomal protein S17, mitochondrial	yes	yes	0	0	1	16	0																1	18.214	18.214	3	8.5696E-16	12566	DP690-16	149.04	117.44			NaN	NaN	NaN	0	0	Median	8611600	8611600	0	15419	2444	14408	30544	73893;73894;73895	73894		3	9606
VIDQEMQAIGGQK	1	0	Oxidation (M)	1431.7028	0.70277871	1530	Q7L3T8	PARS2	Probable proline--tRNA ligase, mitochondrial	yes	yes	0	1	0	7.67	3.77					2								1				11.946	11.946	2	0.0035406	4606	DP690-13	120.99	78.653			NaN	NaN	NaN	0	0	Median	10772000	4309000	6463000	15420	1530	14409	30545;30546;30547	73896;73897;73898;73899	73897	2206	4	9606
VIDRELYQQLQR	0	2	Unmodified	1559.842	0.8419898	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	10.2	1.47									2	2			1				14.987	14.987	2;3	1.7418E-05	9438	DP690-10	136.7	114.92			0.81853	0.96849	11.735	3	0	Plateau	1109900000	609620000	500230000	15421	1319	14410	30548;30549;30550;30551;30552	73900;73901;73902;73903;73904;73905;73906;73907;73908;73909;73910;73911;73912;73913;73914;73915;73916;73917;73918	73900		19	9606
VIECSYTSADGQR	0	1	Unmodified	1484.6566	0.6565568	2315	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	10.9	4.15						3			1	1				1	1	2	12.341	12.341	2	1.1492E-10	5720	DP690-10	224.75	196.89			0.8389	1.0001	7.3415	3	0	Median	202250000	111070000	91178000	15422	2315	14411	30553;30554;30555;30556;30557;30558;30559;30560;30561	73919;73920;73921;73922;73923;73924;73925;73926;73927;73928;73929;73930;73931;73932;73933;73934;73935;73936;73937;73938	73921		20	9606
VIEEQLEPAVEK	1	0	Unmodified	1382.7293	0.72931103	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10.5	0.5										1	1						14.761	14.761	2	8.1106E-05	9152	DP690-10	145.99	145.99			0.89549	1.0983	13.822	2	0	Median	135160000	69200000	65959000	15423	732	14412	30562;30563	73939;73940;73941	73939		3	9606
VIEPLKDFHKDEVR	2	1	Unmodified	1723.9257	0.92571943	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	2	3.5	0.5			1	1													13.038	13.038	4	0.00060923	6044	DP690-3	106.58	106.58			0.75687	0.7999	1.8013	2	0	Median	77771000	45655000	32116000	15424	813	14413	30564;30565	73942;73943;73944;73945	73943		4	9606
VIEPQYFGLAYLFR	0	1	Unmodified	1714.9083	0.90827845	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10.3	0.471										2	1						24.007	24.007	2	0.00027623	21798	DP690-11	113.22	113.22			0.52916	0.65262	NaN	1	0	Median	28493000	19156000	9336400	15425	732	14414	30566;30567;30568	73946;73947;73948;73949;73950;73951;73952;73953	73953		8	9606
VIESGPDQLNDNEYTK	1	0	Unmodified	1820.8428	0.84283724	2291	Q9P0J1	PDP1	[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial	yes	yes	0	0	0	13	0													1				14.531	14.531	2	2.0939E-09	8119	DP690-13	193.15	157.15			0.48433	0.56369	NaN	1	0	Median	26872000	17284000	9588500	15426	2291	14415	30569	73954;73955;73956;73957;73958	73956		5	9606
VIESTQDLGNDLAGVMALQR	0	1	Unmodified	2129.0787	0.078667612	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							21.382	21.382	2	1.4321E-06	18632	DP690-10	203.74	143.25			NaN	NaN	NaN	0	0	Median	7396300	7396300	0	15427	1080	14416	30570	73959	73959		1	9606
VIESTQDLGNDLAGVMALQR	0	1	Oxidation (M)	2145.0736	0.073582234	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										1							19.404	19.404	2	0.037356	15860	DP690-10	88.282	42.366			NaN	NaN	NaN	0	0	Median	0	0	0	15428	1080	14416	30571	73960	73960	1700	1	9606
VIFFLPWQK	1	0	Unmodified	1176.6696	0.66955173	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	11.5	0.5											1	1					22.186	22.186	2	0.00065813	19524	DP690-11	143.02	143.02			0.68356	0.82644	4.1432	2	0	Median	64923000	38639000	26284000	15429	737	14417	30572;30573	73961;73962;73963;73964;73965;73966;73967;73968	73964		8	9606
VIFLEDDDVAAVVDGR	0	1	Unmodified	1731.8679	0.86792978	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	3.5	0.5			1	1													21.146	21.146	2	7.9612E-07	16480	DP690-3	156.69	92.648			0.81092	0.93009	NaN	1	0	Median	5701400	4839300	862130	15430	1122	14418	30574;30575	73969;73970;73971;73972;73973;73974	73969		6	9606
VIFPAAEDKDQDLITIIGK	2	0	Unmodified	2085.1358	0.13577179	1071	Q00341	HDLBP	Vigilin	yes	yes	0	0	1	10	0										1							19.777	19.777	3	8.5262E-05	16399	DP690-10	109.87	83.521			0.62506	0.72734	NaN	1	0	Median	200900000	116850000	84058000	15431	1071	14419	30576	73975;73976;73977;73978	73975		4	9606
VIFPYEAQNDDELTIK	1	0	Unmodified	1893.936	0.93600934	1823	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	13	0													1				19.344	19.344	2	9.6656E-18	14577	DP690-13	225.79	197.56			0.87467	1.011	NaN	1	0	Median	60044000	30696000	29348000	15432	1823	14420	30577	73979;73980;73981;73982	73980		4	9606
VIGGDDLSTLTGK	1	0	Unmodified	1274.6718	0.67179615	356	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	7	0							1										16.992	16.992	2	0.00038132	10760	DP690-7	110.54	70.482			0.83022	0.88587	NaN	1	0	Median	85612000	42653000	42959000	15433	356	14421	30578	73983;73984;73985;73986	73983		4	9606
VIGIECSSISDYAVK	1	0	Unmodified	1639.8127	0.81272309	1962	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	10	4						1								1			17.813	17.813	2	0.005489	12756	DP690-14	112.94	59.369			NaN	NaN	NaN	0	0	Median	18934000	0	18934000	15434	1962	14422	30579;30580	73987;73988;73989	73987		3	9606
VIGLSSDLQQVGGASAR	0	1	Unmodified	1656.8795	0.87949752	80	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	9	4					1								1				17.054	17.054	2	1.0656E-22	11527	DP690-13	255.54	199.82			2.1585	2.4028	114.1	2	0	Median	149220000	69459000	79766000	15435	80	14423	30581;30582	73990;73991;73992;73993;73994;73995;73996	73990		7	9606
VIGNGSFGVVYQAK	1	0	Unmodified	1437.7616	0.76161421	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	13	0													1				16.615	16.615	2	2.9274E-05	11012	DP690-13	130.94	108.6			0.93677	1.0833	NaN	1	0	Median	55060000	29730000	25329000	15436	811	14424	30583	73997;73998	73997		2	9606
VIGSELVQK	1	0	Unmodified	971.56515	0.56514624	676	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	5	0					1												13.626	13.626	2	0.0066504	6407	DP690-5	93.143	40.207			1.1381	1.1367	NaN	1	0	Median	29924000	13090000	16833000	15437	676	14425	30584	73999	73999		1	9606
VIGSGCNLDSAR	0	1	Unmodified	1247.5928	0.59283433	352;400	P07195;Q6ZMR3;P07864;P00338	LDHB;LDHAL6A;LDHC;LDHA	L-lactate dehydrogenase B chain;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase C chain;L-lactate dehydrogenase A chain	no	no	0	0	0	6	0						1											12.413	12.413	2	0.00013967	4948	DP690-6	169.41	101.51			1.3696	1.4937	NaN	1	0	Median	57170000	22381000	34789000	15438	400;352	14426	30585	74000;74001;74002;74003	74003		4	9606
VIGTLEEVHMPQNGINHPGITALAQAFAVNPLLR	0	1	Oxidation (M)	3635.9246	0.92462058	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	1	0	12	0												2					21.39	21.39	3;4	1.8896E-09	17603	DP690-12	108.22	88.528			NaN	NaN	NaN	0	0	Median	23076000	23076000	0	15439	750	14427	30586;30587	74004;74005;74006	74004	1104	3	9606
VIGTLLGTVDK	1	0	Unmodified	1114.6598	0.65977491	80	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	13	0													1				17.256	17.256	2	0.00011591	11930	DP690-13	145.46	92.524			0.95163	1.0943	NaN	1	0	Median	88156000	46133000	42023000	15440	80	14428	30588	74007;74008	74008		2	9606
VIHDNFGIVEGLMTTVHAITATQK	1	0	Unmodified	2594.3527	0.35265763	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	14	0														1			22.68	22.68	3	0.045989	19031	DP690-14	50.803	50.803			0.8377	0.99516	NaN	1	0	Median	15503000	8906600	6596600	15441	371	14429	30589	74009	74009		0	9606
VIHDNFGIVEGLMTTVHAITATQK	1	0	Oxidation (M)	2610.3476	0.34757225	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	1	0	6	0						2											20.775	20.775	3;4	2.2648E-10	14840	DP690-6	149.8	132.23			1.5886	1.7495	2.1989	2	0	Median	129400000	47207000	82190000	15442	371	14429	30590;30591	74010;74011;74012;74013;74014;74015;74016;74017;74018	74011	392	9	9606
VIHGVINSFVHVEQYK	1	0	Unmodified	1867.9945	0.9944677	1228	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	3	0			1														15.95	15.95	4	0.0033953	9897	DP690-3	94.673	65.544			NaN	NaN	NaN	0	0	Median	48740000	0	48740000	15443	1228	14430	30592	74019;74020	74020		2	9606
VIHLSNLPHSGYSDSAVLK	1	0	Unmodified	2036.0691	0.069089203	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											2						15.135	15.135	3;4	0.00042714	9581	DP690-11	88.19	64.659			1.0489	1.1582	50.575	2	0	Median	813200000	332800000	480400000	15444	735	14431	30593;30594	74021;74022;74023	74021		2	9606
VIHSILNSPYAK	1	0	Unmodified	1340.7452	0.74523587	567	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	13	0													1				14.138	14.138	3	1.839E-05	7473	DP690-13	130.56	130.56			0.77232	0.86538	NaN	1	0	Median	172660000	96789000	75867000	15445	567	14432	30595	74024;74025;74026;74027	74025		4	9606
VIHVVTSEMDNYEPGVYTEK	1	0	Oxidation (M)	2325.0835	0.083478218	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	1	0	7	4			1								1						15.04	15.04	3	4.8245E-14	9404	DP690-11	182.09	160.15			0.69487	0.82168	NaN	1	0	Median	115860000	61067000	54795000	15446	657	14433	30596;30597	74028;74029;74030;74031;74032	74028	927	5	9606
VIHVVTSEMDNYEPGVYTEK	1	0	Unmodified	2309.0886	0.088563596	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											1						16.528	16.528	3	0.034486	11751	DP690-11	43.848	31.892			0.71203	0.83653	NaN	1	0	Median	126040000	75090000	50952000	15447	657	14433	30598	74033	74033		1	9606
VIILMLTNQTVHR	0	1	Oxidation (M)	1552.8759	0.87593247	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	1	0	10	0										1							16.262	16.262	3	0.014726	11408	DP690-10	64.224	45.149			0.93926	1.1683	NaN	1	0	Median	81926000	40087000	41839000	15448	1156	14434	30599	74034;74035	74034	1807	2	9606
VIISAPSADAPMFVMGVNHEK	1	0	Oxidation (M)	2228.097	0.096960213	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	1	0	14	0														1			17.35	17.35	3	0.00030572	12196	DP690-14	93.215	93.215			0.61973	0.75246	NaN	1	0	Median	61218000	40468000	20750000	15449	371	14435	30600	74036;74037	74037	393;394	2	9606
VIISAPSADAPMFVMGVNHEK	1	0	Unmodified	2212.102	0.10204559	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	14	0														1			18.581	18.581	3	0.00028156	13823	DP690-14	91.889	58.747			0.61798	0.75066	NaN	1	0	Median	58649000	32151000	26498000	15450	371	14435	30601	74038;74039;74040	74040		3	9606
VIISAPSADAPMFVMGVNHEK	1	0	2 Oxidation (M)	2244.0919	0.091874835	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	2	0	10	4						1								1			16.285	16.285	3	0.00045924	9630	DP690-6	83.251	83.251			1.2392	1.3601	NaN	1	0	Median	68494000	24165000	44329000	15451	371	14435	30602;30603	74041;74042;74043;74044;74045;74046	74044	393;394	6	9606
VIITNFPAAK	1	0	Unmodified	1072.6281	0.62808085	770	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	7	4			1								1						15.795	15.795	2	0.03762	10480	DP690-11	68.371	47.424			0.89633	1.0213	13.515	2	0	Median	69723000	29913000	39810000	15452	770	14436	30604;30605	74047;74048;74049	74047		3	9606
VILAGNLLSHSTQSR	0	1	Unmodified	1594.8791	0.87910359	785	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	13	0													1				15.37	15.37	3	0.069633	9322	DP690-13	59.709	31.426			NaN	NaN	NaN	0	0	Median	21360000	0	21360000	15453	785	14437	30606	74050	74050		1	9606
VILALGDYMGATCHACIGGTNVR	0	1	Oxidation (M)	2464.1661	0.16611919	1266	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	1	0	13	0													1				17.17	17.17	3	0.0074844	11774	DP690-13	79.695	49.401			NaN	NaN	NaN	0	0	Median	13069000	13069000	0	15454	1266	14438	30607	74051	74051	1935	1	9606
VILDLTPNYR	0	1	Unmodified	1202.6659	0.66592292	414	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	11	0											1						17.76	17.76	2	0.011479	13422	DP690-11	81.594	50.908			0.73795	0.88329	NaN	1	0	Median	114740000	70264000	44475000	15455	414	14439	30608	74052;74053	74052		2	9606
VILDNEEQR	0	1	Unmodified	1114.5619	0.56185177	1626	Q8IYM9	TRIM22	E3 ubiquitin-protein ligase TRIM22	yes	yes	0	0	0	12	0												1					12.04	12.04	2	0.0053151	4884	DP690-12	98.523	52.805			1.0261	1.2225	NaN	1	0	Median	32975000	15514000	17461000	15456	1626	14440	30609	74054;74055	74054		2	9606
VILDYNTAHNK	1	0	Unmodified	1286.6619	0.66190017	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	9.25	3.19				2					1	1	1	3					12.155	12.155	2;3	2.572E-05	4727	DP690-4	139.43	107.22			0.85689	0.95858	17.294	6	0	Median	932370000	459420000	472950000	15457	1269	14441	30610;30611;30612;30613;30614;30615;30616;30617	74056;74057;74058;74059;74060;74061;74062;74063;74064;74065;74066;74067;74068;74069;74070;74071;74072;74073;74074;74075;74076;74077;74078	74070		23	9606
VILHLKEDQTEYLEER	1	1	Unmodified	2014.0371	0.037120373	416;409	P07900;Q58FF6;P08238;Q58FF7	HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	no	no	0	0	1	5.25	3.34			2	1							1						15.09	15.09	3;4	1.1163E-12	8694	DP690-3	204.17	204.17			0.99259	1.1164	6.6667	4	0	Median	739520000	372610000	366910000	15458	409;416	14442	30618;30619;30620;30621	74079;74080;74081;74082;74083;74084;74085;74086;74087;74088;74089;74090;74091;74092;74093	74084		15	9606
VIMELFDNDQVGKDEFLGR	1	1	Unmodified	2224.0834	0.083418638	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	1	10	0										1							20.217	20.217	3	0.00048269	17041	DP690-10	88.637	66.506			0.72881	0.91407	NaN	1	0	Median	43155000	21128000	22027000	15459	2276	14443	30622	74094;74095	74094		2	9606
VIMELFDNDQVGKDEFLGR	1	1	Oxidation (M)	2240.0783	0.078333261	2276	Q9NZM1	MYOF	Myoferlin	yes	yes	0	1	1	10	0										1							18.806	18.806	3	0.0011552	15006	DP690-10	139.12	111.41			NaN	NaN	NaN	0	0	Median	0	0	0	15460	2276	14443	30623	74096	74096	2731	1	9606
VIMGEEVEPVGLMTGSGVVGVK	1	0	2 Oxidation (M)	2218.1225	0.12250626	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	2	0	2	0		1															17.585	17.585	2	4.0064E-10	10753	DP690-2	158.93	144.13			1.2622	1.2691	NaN	1	0	Median	7954800	3556400	4398400	15461	602	14444	30624	74097;74098;74099;74100	74097	823;824	4	9606
VIMGEEVEPVGLMTGSGVVGVK	1	0	Oxidation (M)	2202.1276	0.12759164	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	0	2	0		2															19.428	19.428	2	2.1722E-09	12909	DP690-2	148.57	148.57			1.1047	1.0873	NaN	1	0	Median	2027000	881660	1145400	15462	602	14444	30625;30626	74101;74102;74103	74102	823;824	3	9606
VINAAHSFYNGTTTLPISDEDR	0	1	Unmodified	2420.1608	0.16081734	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	3	0			1														16.885	16.885	3	3.5596E-09	11152	DP690-3	148.66	101.57			NaN	NaN	NaN	0	0	Median	0	0	0	15463	813	14445	30627	74104	74104		1	9606
VINAAHSFYNGTTTLPISDEDRTPR	0	2	Unmodified	2774.3624	0.36237069	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	1	4	0				1													15.893	15.893	4	0.00016131	9686	DP690-4	100.47	100.47			0.66379	0.69551	NaN	1	0	Median	25889000	16976000	8912600	15464	813	14446	30628	74105;74106;74107	74105		3	9606
VINDLFSDVLEEGELDMEK	1	0	Oxidation (M)	2210.03	0.030045664	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	1	0	9.5	0.5									1	1							22.997	22.997	2	1.6892E-13	20632	DP690-10	192.4	175.63			0.95671	1.176	NaN	1	0	Median	42654000	21214000	21440000	15465	2190	14447	30629;30630	74108;74109;74110;74111;74112;74113;74114;74115	74108	2671	8	9606
VINEPTAAALAYGLDK	1	0	Unmodified	1644.8723	0.87228688	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	8	4				1								1					18.76	18.76	2	5.4245E-07	13290	DP690-4	156.08	127.11			1.4482	1.6501	62.454	2	0	Median	68267000	34969000	33298000	15466	695	14448	30631;30632	74116;74117;74118	74118		3	9606
VINLNDNTFTEK	1	0	Unmodified	1406.7042	0.70415892	750	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	12	0												1					16.189	16.189	2	4.7563E-05	10675	DP690-12	182.16	121.99			0.85197	0.92154	NaN	1	0	Median	322320000	174650000	147670000	15467	750	14449	30633	74119;74120;74121;74122	74119		4	9606
VINQILTEMDGMSTK	1	0	2 Oxidation (M)	1710.8168	0.81682219	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	2	0	3	0			1														14.882	14.882	2	2.753E-05	8436	DP690-3	138.42	116.09			1.1366	1.2156	NaN	1	0	Median	14306000	6962100	7343400	15468	893	14450	30634	74123;74124;74125	74125	1364;1365	3	9606
VIPDFVCQGGDITK	1	0	Unmodified	1547.7654	0.76537896	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	9.5	0.5									1	1							17.645	17.645	2	3.3157E-05	11950	DP690-9	132.03	101.46			0.82662	1.0381	11.573	2	0	Median	118000000	66425000	51573000	15469	808	14451	30635;30636	74126;74127;74128;74129;74130;74131	74128		6	9606
VIQCFAETGQVQK	1	0	Unmodified	1506.7501	0.75006325	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	7.67	4.03		1								1	1						13.986	13.986	2	9.4634E-11	7974	DP690-10	222.28	174.7			1.3261	1.478	25.008	2	0	Median	177850000	71004000	106850000	15470	1075	14452	30637;30638;30639	74132;74133;74134;74135;74136;74137;74138;74139;74140;74141;74142	74134		11	9606
VIQEIVDK	1	0	Unmodified	942.5386	0.53859714	829	P51114;P51116	FXR1;FXR2	Fragile X mental retardation syndrome-related protein 1;Fragile X mental retardation syndrome-related protein 2	yes	no	0	0	0	12	0												1					13.062	13.062	2	0.044965	6211	DP690-12	121.62	64.338			0.86713	0.92087	NaN	1	0	Median	427850000	231210000	196640000	15471	829	14453	30640	74143	74143		0	9606
VIQENEHALQK	1	0	Unmodified	1307.6834	0.68336389	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	6.5	3.5			1							1							10.491	10.491	2;3	0.003397	2934	DP690-10	89.029	60.82			0.73229	0.83118	28.043	2	0	Median	91028000	51022000	40007000	15472	2215	14454	30641;30642	74144;74145;74146	74144		3	9606
VIQGDGVDINTLQEIVEGMK	1	0	Oxidation (M)	2173.0936	0.093648974	742	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	1	0	4	0				1													21.971	21.971	2	0.00084454	16929	DP690-4	98.421	98.421			1.1283	1.2005	NaN	1	0	Median	1632900	819220	813690	15473	742	14455	30643	74147;74148;74149;74150;74151	74151	1094	5	9606
VIQGLYSGVTTVELDTLAAETAATLTTK	1	0	Unmodified	2865.5223	0.52228496	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	11	0											1						25.377	25.377	2	1.0319000000000001E-25	23371	DP690-11	194.77	194.77			0.68889	0.80981	NaN	1	0	Median	2601300	1524700	1076600	15474	574	14456	30644	74152;74153;74154;74155;74156	74155		5	9606
VIQHNALEDR	0	1	Unmodified	1193.6153	0.61528433	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	3	0			1														10.451	10.451	2	0.06245	2734	DP690-3	60.118	20.117			0.61874	0.69788	NaN	1	0	Median	9113400	5753400	3360100	15475	203	14457	30645	74157	74157		1	9606
VIQVSPFLLALSGNSR	0	1	Unmodified	1699.9621	0.96210494	301	O95059	RPP14	Ribonuclease P protein subunit p14	yes	yes	0	0	0	16	0																1	22.359	22.359	2	3.2152E-06	17230	DP690-16	138.45	138.45			0.76362	0.8921	NaN	1	0	Median	6957000	3687500	3269500	15476	301	14458	30646	74158;74159;74160;74161;74162	74160		5	9606
VIQYLAYVASSHK	1	0	Unmodified	1477.7929	0.79291434	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		2															16.488	16.488	2;3	4.0257E-05	9499	DP690-2	147.62	147.62			1.1708	1.185	0.97435	2	0	Median	75949000	34886000	41063000	15477	668	14459	30647;30648	74163;74164;74165;74166;74167;74168;74169;74170;74171	74170		9	9606
VISEPGEAEVFMTPEDFVR	0	1	Oxidation (M)	2167.0143	0.01433602	1968	Q9BPX6	MICU1	Calcium uptake protein 1, mitochondrial	yes	yes	0	1	0	13	0													1				20.071	20.071	2	3.2656E-09	15530	DP690-13	145.61	117.93			0.65503	0.80021	NaN	1	0	Median	37434000	22492000	14942000	15478	1968	14460	30649	74172;74173;74174;74175	74173	2516	4	9606
VISEPGEAEVFMTPEDFVR	0	1	Unmodified	2151.0194	0.019421398	1968	Q9BPX6	MICU1	Calcium uptake protein 1, mitochondrial	yes	yes	0	0	0	13	0													2				21.448	21.448	2	2.3661E-11	17348	DP690-13	168.89	135.69			0.62477	0.75224	NaN	1	0	Median	8124200	4874600	3249700	15479	1968	14460	30650;30651	74176;74177;74178;74179	74178		4	9606
VISESPPDQWEAR	0	1	Unmodified	1512.7209	0.72087161	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							15.255	15.255	2	0.00028003	9819	DP690-10	115.29	87.983			0.84058	1.0454	NaN	1	0	Median	82643000	40958000	41685000	15480	1782	14461	30652	74180;74181	74180		2	9606
VISGVLQLGNIVFK	1	0	Unmodified	1485.8919	0.89190011	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	8.12	3.3		1	1						1	4	1						22.211	22.211	2	2.9425E-05	17720	DP690-3	130.98	108.99			1.0702	1.1928	16.59	4	0	Median	77570000	38769000	38801000	15481	668	14462	30653;30654;30655;30656;30657;30658;30659;30660	74182;74183;74184;74185;74186;74187;74188;74189;74190;74191;74192;74193;74194;74195;74196;74197	74193		15	9606
VISGVLQLGNIVFKK	2	0	Unmodified	1613.9869	0.98686312	668	P35579	MYH9	Myosin-9	yes	yes	0	0	1	5	3.56		1	1							1							19.973	19.973	3	0.00011329	13575	DP690-2	109.15	101.47			1.0939	1.3994	18.031	3	0	Plateau	63075000	27636000	35440000	15482	668	14463	30661;30662;30663	74198;74199;74200;74201;74202;74203;74204	74202		7	9606
VISTMSVGIDHLALDEIK	1	0	Oxidation (M)	1956.0238	0.023778495	2320	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	1	0	6	0						1											18.193	18.193	3	2.1444E-05	11948	DP690-6	124.04	124.04			0.81287	0.92655	NaN	1	0	Median	7896700	4375900	3520800	15483	2320	14464	30664	74205;74206	74206	2772	2	9606
VITDIAGVIPAEK	1	0	Unmodified	1324.7602	0.76021723	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	14	0														1			18.049	18.049	2	0.00028003	13029	DP690-14	115.29	115.29			0.77485	0.91884	NaN	1	0	Median	145150000	80824000	64331000	15484	662	14465	30665	74207;74208	74207		2	9606
VITDVYYVDGTEVER	0	1	Unmodified	1756.8519	0.85194536	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	10	0										3							17.187	17.187	2	8.2151E-15	12670	DP690-10	226.04	194.97			0.83341	1.019	NaN	1	0	Median	157300000	85170000	72128000	15485	1167	14466	30666;30667;30668	74209;74210;74211;74212;74213	74209		5	9606
VITEEEKNFK	2	0	Unmodified	1235.6398	0.63976774	593	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	1	15	0															1		11.162	11.162	3	3.5224E-05	3682	DP690-15	156.35	125.28			0.90577	1.0381	NaN	1	0	Median	239340000	124330000	115010000	15486	593	14467	30669	74214;74215;74216	74216		3	9606
VITEHTNYLAPYQFLTAFSQLISR	0	1	Unmodified	2811.4596	0.45956554	1219	Q13535	ATR	Serine/threonine-protein kinase ATR	yes	yes	0	0	0	10	0										1							25.39	25.39	3	0.019316	23553	DP690-10	45.679	33.188			0.77963	0.93523	NaN	1	0	Median	2988500	1614400	1374200	15487	1219	14468	30670	74217;74218	74217		2	9606
VITEYLNAQESAK	1	0	Unmodified	1464.746	0.74602373	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	11	0											1						15.408	15.408	2	0.014403	10074	DP690-11	101.35	62.084			NaN	NaN	NaN	0	0	Median	24869000	0	24869000	15488	1524	14469	30671	74219	74219		1	9606
VITIMQNPR	0	1	Oxidation (M)	1086.5856	0.5855641	973	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	1	0	10.7	3.77								2								1	12.06	12.06	2	0.01179	4604	DP690-16	92.47	62.285			0.79064	0.81282	16.068	3	0	Median	706330000	398000000	308330000	15489	973	14470	30672;30673;30674	74220;74221;74222;74223;74224	74221	1491	5	9606
VITIMQNPR	0	1	Unmodified	1070.5906	0.59064948	973	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	16	0																1	14.433	14.433	2	0.0046298	7761	DP690-16	101.28	65.666			0.94391	1.0739	NaN	1	0	Median	40397000	19368000	21029000	15490	973	14470	30675	74225;74226	74226		2	9606
VIVDFSSPNIAK	1	0	Unmodified	1288.7027	0.70270235	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	8	4				1								1					17.141	17.141	2	0.007653	11966	DP690-12	106.18	40.551			NaN	NaN	NaN	0	0	Median	55449000	55449000	0	15491	886	14471	30676;30677	74227;74228	74227		2	9606
VIVFDGVPSK	1	0	Unmodified	1059.5964	0.59644637	943	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	12	0												1					16.293	16.293	2	0.016536	10858	DP690-12	75.378	51.223			0.84616	1.0079	NaN	1	0	Median	43853000	24913000	18941000	15492	943	14472	30678	74229	74229		1	9606
VIVVGDLSVGK	1	0	Unmodified	1084.6492	0.64921022	2059	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	15	0															1		17.617	17.617	2	7.1227E-05	12156	DP690-15	127.4	77.98			0.85566	0.99229	NaN	1	0	Median	45971000	23571000	22400000	15493	2059	14473	30679	74230;74231;74232;74233	74231		4	9606
VIVVGNPANTNCLTASK	1	0	Unmodified	1756.9142	0.91416847	710	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	6	0						1											15.524	15.524	2	4.3764E-05	8706	DP690-6	125.03	99.691			0.84104	0.94948	NaN	1	0	Median	5292000	3010300	2281700	15494	710	14474	30680	74234;74235;74236	74236		3	9606
VKADRDESSPYAAMLAAQDVAQR	1	2	Oxidation (M)	2507.2074	0.20744995	971	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	2	16	0																2	14.152	14.152	3;4	0.00017344	7604	DP690-16	108.13	88.417			0.85747	0.87652	11.267	2	0	Median	146260000	79937000	66324000	15495	971	14475	30681;30682	74237;74238;74239;74240;74241;74242;74243;74244	74239	1490	8	9606
VKAEGPGLSR	1	1	Unmodified	1012.5665	0.56654322	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10	0										1							7.186	7.186	2	0.057779	1271	DP690-10	76.679	22.711			0.72337	0.67993	NaN	1	0	Median	307020	183980	123040	15496	549	14476	30683	74245	74245		1	9606
VKDDIESLHDKFK	3	0	Unmodified	1572.8148	0.814772	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	2	9	0									1								12.617	12.617	3	0.015628	5378	DP690-9	96.23	62.047			NaN	NaN	NaN	0	0	Median	16831000	0	16831000	15497	1264	14477	30684	74246	74246		1	9606
VKDILQNVFK	2	0	Unmodified	1202.7023	0.70230842	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	11.2	0.829										1	1	2					16.798	16.798	2;3	3.6055E-05	11991	DP690-11	131.09	102.38			0.86024	0.96334	16.293	4	0	Median	514960000	267760000	247200000	15498	751	14478	30685;30686;30687;30688	74247;74248;74249;74250;74251;74252;74253;74254;74255;74256;74257;74258;74259	74250		13	9606
VKDLESLFHR	1	1	Unmodified	1242.6721	0.67207093	1104	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	1	12	0												1					15.245	15.245	3	6.3012E-05	9328	DP690-12	114.4	68.493			1.3764	1.6064	NaN	1	0	Median	105650000	40401000	65245000	15499	1104	14479	30689	74260;74261;74262	74261		3	9606
VKEEIIEAFVQELR	1	1	Unmodified	1701.9301	0.93013611	821	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	1	13	0													3				21.298	21.298	2;3	3.2375E-05	17006	DP690-13	155.37	106.22			1.0122	1.1505	NaN	1	0	Median	110990000	44983000	66008000	15500	821	14480	30690;30691;30692	74263;74264;74265;74266;74267;74268	74263		6	9606
VKEGMNIVEAMER	1	1	2 Oxidation (M)	1536.7276	0.72761325	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	2	1	10	3.46								3								1	11.224	11.224	2;3	0.00050631	3291	DP690-8	124.21	89.028			0.84841	0.98648	12.385	4	0	Median	305240000	164110000	141130000	15501	1008	14481	30693;30694;30695;30696	74269;74270;74271;74272;74273;74274;74275;74276;74277;74278;74279;74280;74281;74282	74279	1529;1530	14	9606
VKEGMNIVEAMER	1	1	Oxidation (M)	1520.7327	0.73269863	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	1	1	8	0								3									13.764	13.764	2;3	0.00061553	7288	DP690-8	95.428	75.045			0.82917	0.96409	0.21001	2	0	Median	94546000	53074000	41471000	15502	1008	14481	30697;30698;30699	74283;74284;74285;74286;74287;74288;74289	74287	1529;1530	7	9606
VKFIHDQTSPNPK	2	0	Unmodified	1509.794	0.79397698	869	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	1	15	0															1		10.365	10.365	3	0.013542	2738	DP690-15	64.945	43.906			0.6179	0.70723	NaN	1	0	Median	19452000	11681000	7771100	15503	869	14482	30700	74290	74290		1	9606
VKGDADVSVPK	2	0	Unmodified	1113.603	0.60298831	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	10	0										1							10.595	10.595	2	0.0017497	3060	DP690-10	115	66.403			0.86003	0.9447	NaN	1	0	Median	427060000	223370000	203680000	15504	1145	14483	30701	74291	74291		1	9606
VKGDLDIAGPNLEGDFKGPK	3	0	Unmodified	2069.0793	0.079319539	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	2	9	0									1								15.976	15.976	3	0.0055471	9818	DP690-9	63.056	41.175			0.58299	0.63981	NaN	1	0	Median	8485800	5567900	2917900	15505	1145	14484	30702	74292	74292		1	9606
VKGDMDVSLPK	2	0	Oxidation (M)	1203.6169	0.61692381	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	1	1	9	0									1								11.335	11.335	2	0.00299	3732	DP690-9	110.54	47.114			0.75887	0.90868	NaN	1	0	Median	12270000	6802100	5468300	15506	1145	14485	30703	74293;74294	74293	1798	2	9606
VKGDVDISLPK	2	0	Unmodified	1169.6656	0.66558856	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	9	0									2								13.944	13.944	2;3	0.033731	6991	DP690-9	80.916	5.264			0.71978	0.83345	NaN	1	0	Median	46033000	27919000	18114000	15507	1145	14486	30704;30705	74295;74296;74297	74295		3	9606
VKGDVDVSLPK	2	0	Unmodified	1155.6499	0.6499385	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	9.5	0.5									2	2							12.978	12.978	2;3	0.0083702	6558	DP690-10	72.34	21.888			0.72864	0.76915	11.222	4	0	Linear	645000000	364860000	280150000	15508	1145	14487	30706;30707;30708;30709	74298;74299;74300;74301;74302;74303;74304;74305;74306	74300		9	9606
VKGDVDVSVPK	2	0	Unmodified	1141.6343	0.63428844	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	9.5	0.5									1	1							11.691	11.691	2	0.00028544	4161	DP690-9	127.83	54.166			0.72766	0.82966	3.5846	2	0	Median	353550000	207900000	145660000	15509	1145	14488	30710;30711	74307;74308;74309;74310;74311;74312;74313;74314	74314		8	9606
VKGEYDMTVPK	2	0	Unmodified	1265.6326	0.63257388	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	10	0										1							12.631	12.631	2	0.04418	6166	DP690-10	75.652	51.133			0.64514	0.80381	NaN	1	0	Median	82158000	34416000	47742000	15510	1145	14489	30712	74315	74315		1	9606
VKGEYDVTVPK	2	0	Unmodified	1233.6605	0.66050319	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	9	0									1								12.551	12.551	2	0.033731	5210	DP690-9	80.916	51.755			0.63588	0.74362	NaN	1	0	Median	30551000	18009000	12542000	15511	1145	14490	30713	74316;74317	74317		2	9606
VKGGGHVAQIYAIR	1	1	Unmodified	1467.831	0.83103118	969	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	1	12	4								1								1	11.847	11.847	3	0.00058714	4512	DP690-8	94.402	94.402			1.0076	1.1045	13.783	2	0	Median	206060000	105770000	100290000	15512	969	14491	30714;30715	74318;74319;74320;74321;74322;74323	74322		6	9606
VKGGVDVTLPR	1	1	Unmodified	1139.6663	0.66625727	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	10	0										1							13.155	13.155	3	0.075119	6809	DP690-10	64.224	26.716			NaN	NaN	NaN	0	0	Median	0	0	0	15513	1145	14492	30716	74324	74324		1	9606
VKGNNVYCLDR	1	1	Unmodified	1336.6558	0.65576893	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	1	3	0			1														11.736	11.736	3	0.065062	4341	DP690-3	47.429	19.045			2.1132	2.3437	NaN	1	0	Median	9744900	3118500	6626400	15514	878	14493	30717	74325	74325		1	9606
VKGTNIQENEYVK	2	0	Unmodified	1520.7835	0.78347187	1988	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	1	13.5	0.5													1	1			11.544	11.544	3	0.0080474	4132	DP690-13	70.68	49.839			1.1969	1.3524	25.707	2	0	Median	56314000	23830000	32485000	15515	1988	14494	30718;30719	74326;74327;74328;74329;74330	74326		5	9606
VKHLDGEEDGSSDQSQASGTTGGR	1	1	Unmodified	2417.0691	0.069101796	2405	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	1	4	0				3													10.218	10.218	3;4	3.1619E-23	2499	DP690-4	191.44	191.44			0.83631	0.95383	NaN	1	0	Median	22822000	11104000	11718000	15516	2405	14495	30720;30721;30722	74331;74332;74333;74334;74335;74336	74333		6	9606
VKIEPGVDPDDTYNETPYEK	2	0	Unmodified	2308.0747	0.074687671	2116	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	1	4	0				1													15.146	15.146	3	0.0002465	8801	DP690-4	94.911	81.456			0.70214	0.72522	NaN	1	0	Median	12806000	7001900	5804200	15517	2116	14496	30723	74337	74337		1	9606
VKLLLQVQHASK	2	0	Unmodified	1362.8347	0.83471958	381;473	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	1	14.5	0.5														1	1		12.362	12.362	3	4.8625E-08	5162	DP690-15	199.82	199.82			0.86774	0.98312	2.2823	2	0	Median	386870000	200700000	186170000	15518	381;473	14497	30724;30725	74338;74339;74340;74341;74342;74343;74344;74345	74344		8	9606
VKLQEMEGTVK	2	0	Oxidation (M)	1276.6697	0.66968766	668	P35579	MYH9	Myosin-9	yes	yes	0	1	1	2	0		2															10.458	10.458	2;3	0.0041568	2511	DP690-2	76.165	40.5			1.2811	1.33	12.624	2	0	Median	29973000	14489000	15484000	15519	668	14498	30726;30727	74346;74347;74348	74346	972	3	9606
VKMDCQECPEGYR	1	1	Oxidation (M)	1686.68	0.68001113	549	P21333	FLNA	Filamin-A	yes	yes	0	1	1	9.67	0.471									1	2							10.458	10.458	2;3	0.0003681	3003	DP690-10	103.14	98.821			0.76591	0.86533	4.7772	2	0	Median	581730000	321930000	259800000	15520	549	14499	30728;30729;30730	74349;74350;74351;74352	74349	710	4	9606
VKPAPDETSFSEALLK	2	0	Unmodified	1730.9091	0.90906631	1169	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	1	14	0														1			16.568	16.568	3	7.9247E-05	11011	DP690-14	117.2	75.2			0.72886	0.81403	NaN	1	0	Median	150380000	82792000	67588000	15521	1169	14500	30731	74353;74354;74355;74356	74353		4	9606
VKPAPDETSFSEALLKR	2	1	Unmodified	1887.0102	0.010177341	1169	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	2	14	0														2			15.335	15.335	3;4	0.0001127	9334	DP690-14	121.13	104.55			0.86154	1.037	17.618	2	0	Median	141050000	82824000	58227000	15522	1169	14501	30732;30733	74357;74358;74359;74360	74359		4	9606
VKPPEGYDVVAVYPNAK	2	0	Unmodified	1844.9672	0.96724989	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	1	12.5	3.84						1								2		1	15.568	15.568	2;3	0.00022797	9594	DP690-14	102.29	79.156			0.56552	0.60946	14.465	4	0	Median	582520000	343130000	239390000	15523	820	14502	30734;30735;30736;30737	74361;74362;74363;74364;74365;74366;74367;74368;74369;74370;74371;74372	74364		12	9606
VKQELLEEVKK	3	0	Unmodified	1341.7868	0.78676633	821	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	2	13	0													2				11.231	11.231	3	2.0545E-16	3687	DP690-13	199.8	108.54			NaN	NaN	NaN	0	0	Median	83402000	83402000	0	15524	821	14503	30738;30739	74373;74374;74375;74376	74375		4	9606
VKTEPPVKLEK	3	0	Unmodified	1266.7547	0.75473792	1424	Q5PSV4	BRMS1L	Breast cancer metastasis-suppressor 1-like protein	yes	yes	0	0	2	14	0														1			10.369	10.369	3	0.00028822	2647	DP690-14	111.5	107.88			0.64649	0.66308	NaN	1	0	Median	23652000	13476000	10175000	15525	1424	14504	30740	74377	74377		1	9606
VKTPEMIIQKPK	3	0	Oxidation (M)	1426.8218	0.82177163	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	2	9	0									1								10.608	10.608	3	0.08457	3121	DP690-9	41.383	23.193			0.78361	0.85997	NaN	1	0	Median	12603000	7025600	5577000	15526	1145	14505	30741	74378	74378		1	9606
VKVEEEEEEKVAEEEETSVK	3	0	Unmodified	2348.1119	0.11186104	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	2	12	0												1					14.335	14.335	3	0.0031398	8117	DP690-12	70.114	44.758			0.79882	0.86522	NaN	1	0	Median	49638000	25404000	24233000	15527	2450	14506	30742	74379	74379		1	9606
VKVEHVVSVLEK	2	0	Unmodified	1364.8028	0.80275075	2267	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	1	2	0		1															13.154	13.154	3	0.0067158	5504	DP690-2	72.681	72.681			1.6493	1.7121	NaN	1	0	Median	6105800	1942100	4163700	15528	2267	14507	30743	74380	74380		1	9606
VKVEPAVDTSR	1	1	Unmodified	1199.651	0.65100113	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										3							10.624	10.624	2;3	0.00023249	3131	DP690-10	126.12	76.7			0.72416	0.83015	NaN	1	0	Median	307630000	176460000	131180000	15529	250	14508	30744;30745;30746	74381;74382;74383;74384;74385	74384		5	9606
VKVPLQDLMVR	1	1	Oxidation (M)	1312.7537	0.75369207	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	1	1	4.5	0.5				1	1												15.385	15.385	3	0.00085222	8523	DP690-5	95.477	57.538			0.73956	0.81778	8.399	2	0	Median	127400000	66314000	61086000	15530	2385	14509	30747;30748	74386;74387;74388	74388	2816	3	9606
VKVPLQDLMVR	1	1	Unmodified	1296.7588	0.75877744	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	1	5	0					1												16.991	16.991	3	7.2693E-05	10554	DP690-5	144.17	131.54			0.79317	0.85032	NaN	1	0	Median	49453000	27386000	22067000	15531	2385	14509	30749	74389;74390;74391	74389		3	9606
VKYETELAMR	1	1	Oxidation (M)	1254.6278	0.62782285	388	P05783;CON__P05784	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	1	1	13	0													1				11.844	11.844	3	0.0089634	4445	DP690-13	72.848	51.476			0.7567	0.89391	NaN	1	0	Median	50597000	24983000	25614000	15532	388	14510	30750	74392	74392	415	1	9606
VKYETELAMR	1	1	Unmodified	1238.6329	0.63290823	388	P05783;CON__P05784	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	0	1	13	0													2				13.313	13.313	2;3	0.0055269	6432	DP690-13	91.658	50.259			0.64509	0.79014	NaN	1	0	Median	43102000	31006000	12096000	15533	388	14510	30751;30752	74393;74394	74394		2	9606
VLADPSDDTK	1	0	Unmodified	1059.5084	0.50841922	1319	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	yes	no	0	0	0	10.8	0.433										1	3						11.083	11.083	2	8.0441E-05	3875	DP690-10	163.15	108.37			0.69074	0.74552	NaN	1	0	Median	891930000	525580000	366340000	15534	1319	14511	30753;30754;30755;30756	74395;74396;74397;74398;74399;74400;74401	74397		7	9606
VLADPSDDTKGFFDPNTHENLTYR	1	1	Unmodified	2751.2776	0.27763801	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							17.151	17.151	4	0.00031404	11285	DP690-9	84.689	71.369			0.6639	0.8031	8.7485	2	0	Median	89376000	50821000	38555000	15535	1319	14512	30757;30758	74402;74403	74403		2	9606
VLADTYDSVYLHPNSYSCACLASGSVLR	0	1	Unmodified	3117.4536	0.45357024	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	3	0			1														19.101	19.101	3	3.021E-25	14040	DP690-3	184.14	168.5			0.78997	0.88073	NaN	1	0	Median	38474000	21522000	16952000	15536	2316	14513	30759	74404;74405;74406;74407;74408	74408		5	9606
VLAETPDSFEK	1	0	Unmodified	1234.6081	0.60813326	1942	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	11	0											1						14.553	14.553	2	8.4214E-05	8862	DP690-11	129.38	89.381			0.806	0.9765	NaN	1	0	Median	68104000	37112000	30992000	15537	1942	14514	30760	74409;74410	74410		2	9606
VLAFLSSVAGDALTR	0	1	Unmodified	1518.8406	0.84059282	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	7	3.56		1							1	1							21.417	21.417	2	1.5048E-05	18656	DP690-10	155.33	155.33			0.99006	1.2235	NaN	1	0	Median	119520000	57946000	61578000	15538	1782	14515	30761;30762;30763	74411;74412;74413;74414;74415;74416;74417	74413		7	9606
VLAFLVLSR	0	1	Unmodified	1016.6383	0.6382516	2477	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	11	0											1						20.649	20.649	2	0.00035087	17507	DP690-11	157.58	141.92			0.80892	0.97888	NaN	1	0	Median	21515000	11298000	10217000	15539	2477	14516	30764	74418;74419;74420;74421	74420		4	9606
VLAGETLSVNDPPDVLDR	0	1	Unmodified	1908.9793	0.97927114	1170	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	11	0											2						18.762	18.762	2	3.1787E-05	14812	DP690-11	147.52	111.07			NaN	NaN	NaN	0	0	Median	18934000	18934000	0	15540	1170	14517	30765;30766	74422;74423	74422		2	9606
VLAIGDEKDQTR	1	1	Unmodified	1343.7045	0.70449327	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	1	9.5	0.5									1	1							11.601	11.601	3	2.1468E-05	4033	DP690-9	126.66	92.788			0.81803	0.96447	26.672	2	0	Median	167690000	81840000	85851000	15541	1158	14518	30767;30768	74424;74425;74426;74427;74428;74429;74430;74431;74432;74433	74432		10	9606
VLAINILGR	0	1	Unmodified	967.61785	0.61785051	188	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	11	0											2						18.966	18.966	2	0.032423	15083	DP690-11	114.6	53.814			NaN	NaN	NaN	0	0	Median	0	0	0	15542	188	14519	30769;30770	74434;74435	74434		2	9606
VLALELFEQITK	1	0	Unmodified	1402.8072	0.80716742	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	12	0												1					23.61	23.61	2	0.00095662	20183	DP690-12	105.86	89.231			1.1465	1.3828	NaN	1	0	Median	1930100	915940	1014100	15543	538	14520	30771	74436;74437;74438;74439;74440	74439		5	9606
VLALLEENSTPQLAGILAR	0	1	Unmodified	2007.1364	0.13644049	1810	Q969S8	HDAC10	Histone deacetylase 10	yes	yes	0	0	0	4	0				1													22.018	22.018	2	1.1748000000000001E-29	16934	DP690-4	231.67	187.68			0.71423	0.82442	NaN	1	0	Median	2445300	1418700	1026600	15544	1810	14521	30772	74441;74442;74443;74444	74444		4	9606
VLALPEPSPAAPTLR	0	1	Unmodified	1530.877	0.87697832	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	12	2.16									1	1	1		1	1	1		17.934	17.934	2	1.4588E-06	12188	DP690-9	179.19	146.14			0.58214	0.63271	18.105	5	0	Median	900180000	545410000	354770000	15545	1319	14522	30773;30774;30775;30776;30777;30778	74445;74446;74447;74448;74449;74450;74451;74452;74453;74454;74455;74456;74457;74458;74459;74460;74461;74462	74459		18	9606
VLALSVETDYTFPLAEK	1	0	Unmodified	1894.9928	0.99279594	385	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	14	0														1			21.245	21.245	2	1.5326E-12	17202	DP690-14	201.38	166.42			1.1052	1.3426	NaN	1	0	Median	57798000	27817000	29981000	15546	385	14523	30779	74463;74464;74465;74466	74464		4	9606
VLAMSGDPNYLHR	0	1	Oxidation (M)	1487.7191	0.71909747	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	1	0	4	0				2													12.842	12.842	2;3	1.0614E-05	5724	DP690-4	139.76	118.1			1.6957	1.8585	2.953	2	0	Median	194940000	67303000	127630000	15547	624	14524	30780;30781	74467;74468;74469;74470;74471;74472;74473	74470	863	7	9606
VLANPGNSQVAR	0	1	Unmodified	1224.6575	0.65748349	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	6.5	5.16			4								1					1	11.058	11.058	2	7.4363E-05	3454	DP690-3	142	104.3			0.97209	1.1284	14.777	2	0	Median	79078000	9681500	69397000	15548	1300	14525	30782;30783;30784;30785;30786;30787	74474;74475;74476;74477;74478;74479;74480;74481	74477		8	9606
VLAPELIPSILEK	1	0	Unmodified	1420.8541	0.85411762	823	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	2	0		1															21.484	21.484	2	0.037379	15123	DP690-2	63.408	63.408			0.97853	0.96308	NaN	1	0	Median	1986800	901880	1084900	15549	823	14526	30788	74482;74483;74484	74482		3	9606
VLAQDVYAK	1	0	Unmodified	1005.5495	0.54949617	2191	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	yes	yes	0	0	0	3	0			1														12.91	12.91	2	0.0025007	5856	DP690-3	109.86	75.69			0.83716	0.88911	NaN	1	0	Median	30664000	17450000	13214000	15550	2191	14527	30789	74485;74486;74487;74488	74488		4	9606
VLAQNSGFDLQETLVK	1	0	Unmodified	1760.9309	0.93086439	702	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	8	4				1								1					18.714	18.714	2	4.2018E-09	13192	DP690-4	190.1	147.38			1.3538	1.4756	NaN	1	0	Median	36456000	24212000	12244000	15551	702	14528	30790;30791	74489;74490;74491;74492;74493	74490		5	9606
VLAQQGEYSEAIPILR	0	1	Unmodified	1785.9625	0.96249887	1271	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	13	0													1				19.009	19.009	2	3.611E-22	14112	DP690-13	238.01	204.25			0.71267	0.84188	NaN	1	0	Median	121740000	71350000	50393000	15552	1271	14529	30792	74494;74495;74496;74497	74495		4	9606
VLATVTKPVGGDK	2	0	Unmodified	1283.7449	0.74490152	1098	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	8	5.62	1	1							1					2			10.797	10.797	2;3	1.3272E-07	3142	DP690-14	187.16	118.78			0.92915	1.0283	6.4379	5	0	Median	335490000	178590000	156900000	15553	1098	14530	30793;30794;30795;30796;30797	74498;74499;74500;74501;74502;74503;74504;74505;74506;74507;74508;74509;74510	74505		13	9606
VLAVNQENEQLMEDYEK	1	0	Unmodified	2050.9517	0.95173576	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	11	0											2						17.65	17.65	2	3.7187999999999996E-36	13235	DP690-11	237.07	169.32			NaN	NaN	NaN	0	0	Median	55196000	0	55196000	15554	476	14531	30798;30799	74511;74512;74513	74511		3	9606
VLAVNQENEQLMEDYEK	1	0	Oxidation (M)	2066.9467	0.94665039	476	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	1	0	9.4	3.2			1								4						15.84	15.84	2	1.1132E-18	10668	DP690-11	232.78	175.26			1.802	1.9127	NaN	1	0	Median	11105000	3625900	7479400	15555	476	14531	30800;30801;30802;30803;30804	74514;74515;74516;74517;74518;74519;74520;74521;74522	74514	585	9	9606
VLAVSLINEALDK	1	0	Unmodified	1383.7973	0.79733102	1575	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	0	10	0										1							21.334	21.334	2	0.00015418	18494	DP690-10	145.28	111.31			0.87714	1.0632	NaN	1	0	Median	8734000	4254200	4479800	15556	1575	14532	30805	74523;74524;74525	74523		3	9606
VLCALTEANVQYAAVR	0	1	Unmodified	1776.9193	0.91925384	2114	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	0	2	0		1															17.744	17.744	2	0.01411	10978	DP690-2	99.343	61.105			NaN	NaN	NaN	0	0	Median	1134700	1134700	0	15557	2114	14533	30806	74526	74526		1	9606
VLCAVSGPR	0	1	Unmodified	957.50659	0.5065855	1426	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	15	0															1		11.76	11.76	2	0.0091926	4376	DP690-15	90.37	59.08			0.63705	0.7371	NaN	1	0	Median	14403000	8497500	5905800	15558	1426	14534	30807	74527;74528	74528		2	9606
VLCLAVAVGHVK	1	0	Unmodified	1264.7326	0.73256269	1004	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	15	0															1		15.615	15.615	3	0.00065153	9645	DP690-15	70.412	70.412			0.86221	1.0174	NaN	1	0	Median	21966000	12536000	9430300	15559	1004	14535	30808	74529;74530	74530		2	9606
VLCPIIQTADYPINLAAIK	1	0	Unmodified	2112.1653	0.16529777	1546;236	Q7Z460;O75122	CLASP1;CLASP2	CLIP-associating protein 1;CLIP-associating protein 2	no	no	0	0	0	10	0										1							21.814	21.814	2	3.5525E-18	19217	DP690-10	212.68	188.17			0.7824	0.96178	NaN	1	0	Median	43997000	23772000	20226000	15560	1546;236	14536	30809	74531;74532;74533;74534	74531		4	9606
VLDAIIQEK	1	0	Unmodified	1027.5914	0.59136099	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	10	0										1							15.551	15.551	2	0.024648	10405	DP690-10	75.378	40.226			0.88657	1.0938	NaN	1	0	Median	98604000	50514000	48090000	15561	2215	14537	30810	74535	74535		1	9606
VLDAPGGGSVLVMEHMDMR	0	1	2 Oxidation (M)	2044.938	0.93801673	2152	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	2	0	6	0						1											15.838	15.838	3	0.00060071	9038	DP690-6	81.639	63.343			0.79214	0.88008	NaN	1	0	Median	32640000	18676000	13964000	15562	2152	14538	30811	74536;74537;74538	74536	2639;2640	3	9606
VLDELTLAR	0	1	Unmodified	1028.5866	0.58660996	40;29;45	CON__P02533;P02533;CON__A2A4G1;CON__Q04695;Q04695;CON__Q9QWL7;CON__P08779;P08779	KRT14;KRT17;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16	no	no	0	0	0	6	4.47	1	1			1				1				1				16.93	16.93	2	6.1056E-16	8355	DP690-1	203.57	124.96		+	0.83394	0.96117	NaN	1	0	Median	257010000	169210000	87805000	15563	29;45;40	14539	30812;30813;30814;30815;30816	74539;74540;74541;74542;74543;74544;74545;74546;74547;74548;74549;74550	74540		12	9606
VLDELTLTK	1	0	Unmodified	1030.591	0.59102664	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	6.85	5.5	3	1	1	1	1	1		1					1	1	1	1	16.541	16.541	2	0.00029413	8003	DP690-1	153.04	51.435		+	NaN	NaN	NaN	0	0	Median	451340000	451340000	0	15564	42	14540	30817;30818;30819;30820;30821;30822;30823;30824;30825;30826;30827;30828;30829	74551;74552;74553;74554;74555;74556;74557;74558;74559;74560;74561;74562;74563;74564;74565;74566;74567;74568;74569	74551		19	9606
VLDEYEEEKR	1	1	Unmodified	1308.6198	0.61976058	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	1	9	0									1								11.307	11.307	3	0.0021283	3704	DP690-9	116.52	89.09			NaN	NaN	NaN	0	0	Median	4509500	4509500	0	15565	1762	14541	30830	74570;74571	74570		2	9606
VLDFEHFLPMLQTVAK	1	0	Oxidation (M)	1902.9914	0.99135615	925	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	1	0	12	4								2								2	21.638	21.638	2;3	0.00033682	15277	DP690-8	98.676	83.469			0.84656	0.79868	15.207	4	0	Linear	114950000	63627000	51325000	15566	925	14542	30831;30832;30833;30834	74572;74573;74574;74575;74576;74577;74578;74579;74580;74581;74582;74583;74584;74585;74586;74587	74581	1419	16	9606
VLDILLEQYPALITGR	0	1	Unmodified	1813.0349	0.034935528	2253	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	11	0											1						23.097	23.097	2	0.0032849	20732	DP690-11	102.97	102.97			1.0234	1.2698	NaN	1	0	Median	8046300	3645300	4401000	15567	2253	14543	30835	74588	74588		1	9606
VLDLGCGSGLLGITAFK	1	0	Unmodified	1719.9229	0.92294224	329	O95568	METTL18	Histidine protein methyltransferase 1 homolog	yes	yes	0	0	0	13	0													1				22.355	22.355	2	0.0039613	18334	DP690-13	109.44	69.288			NaN	NaN	NaN	0	0	Median	3103700	3103700	0	15568	329	14544	30836	74589	74589		1	9606
VLDLGSPQLAMHSIR	0	1	Oxidation (M)	1651.8716	0.87157537	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	1	0	4.75	0.433				1	3												16.14	16.14	2;3	0.0016765	8863	DP690-5	81.128	45.365			0.79279	0.87162	21.291	4	0	Median	371840000	217540000	154300000	15569	2385	14545	30837;30838;30839;30840	74590;74591;74592;74593;74594;74595;74596;74597	74593	2817	7	9606
VLDLGSPQLAMHSIR	0	1	Unmodified	1635.8767	0.87666075	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	5	0					1												17.365	17.365	3	4.1249E-06	11065	DP690-5	138.31	101.79			0.8409	0.86826	NaN	1	0	Median	148070000	81912000	66159000	15570	2385	14545	30841	74598;74599;74600;74601	74601		4	9606
VLDLLDPASGDLVIR	0	1	Unmodified	1594.893	0.89302232	1296	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	0	0	12	0												1					22.085	22.085	2	0.0035503	18491	DP690-12	96.604	96.604			0.56428	0.68784	NaN	1	0	Median	7992500	4439500	3553000	15571	1296	14546	30842	74602;74603;74604	74603		3	9606
VLDLVLQLFQAK	1	0	Unmodified	1385.8282	0.82823722	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	10.3	0.943									1		2						24.262	24.262	2	0.001679	19723	DP690-9	98.249	98.249			0.74916	0.88134	NaN	1	0	Median	1437600	710960	726640	15572	83	14547	30843;30844;30845	74605;74606;74607;74608	74607		4	9606
VLDMPTQELGLPAYR	0	1	Oxidation (M)	1717.8709	0.87090667	2177	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	yes	yes	0	1	0	4	0				1													18.179	18.179	2	0.00041717	12483	DP690-4	115	85.941			1.2273	1.4185	NaN	1	0	Median	3791300	2134500	1656700	15573	2177	14548	30846	74609;74610;74611;74612;74613	74610	2662	5	9606
VLDSGAPIKIPVGPETLGR	1	1	Unmodified	1918.0888	0.088762013	392	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	13	0													1				17.994	17.994	3	0.0012853	12828	DP690-13	75.017	75.017			0.62844	0.73757	NaN	1	0	Median	56001000	34145000	21856000	15574	392	14549	30847	74614	74614		1	9606
VLEAAAQAAR	0	1	Unmodified	998.55089	0.55089316	2180	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	11	4							1								1		11.304	11.304	2	0.00057989	3910	DP690-7	116.37	69.289			0.99236	1.1475	7.2492	2	0	Median	36260000	18401000	17858000	15575	2180	14550	30848;30849	74615;74616;74617;74618;74619;74620;74621	74621		7	9606
VLEALLPLK	1	0	Unmodified	994.64267	0.64266828	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	3	0.816		1	1	1													19.345	19.345	2	0.00048886	14286	DP690-3	151.29	88.633			0.78702	0.80254	7.012	3	0	Plateau	125850000	70362000	55486000	15576	789	14551	30850;30851;30852	74622;74623;74624;74625;74626;74627;74628;74629;74630;74631	74626		10	9606
VLEALLPLKGLEER	1	1	Unmodified	1578.9345	0.9344932	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		2															19.531	19.531	2;3	0.00014816	13013	DP690-2	110.92	68.367			0.86745	0.85392	7.1075	2	0	Median	9771100	4946600	4824500	15577	789	14552	30853;30854	74632;74633;74634;74635;74636	74635		5	9606
VLEDQFDEIIVDIATK	1	0	Unmodified	1846.9564	0.95641044	1879	Q96IY1	NSL1	Kinetochore-associated protein NSL1 homolog	yes	yes	0	0	0	14	0														1			24.446	24.446	2	6.5739E-07	20992	DP690-14	147.52	147.52			0.47873	0.56385	NaN	1	0	Median	2832000	1840100	991940	15578	1879	14553	30855	74637;74638;74639	74638		3	9606
VLEEAAAAEEGLR	0	1	Unmodified	1356.6885	0.68850885	173	O43293	DAPK3	Death-associated protein kinase 3	yes	yes	0	0	0	13	0													1				15.804	15.804	2	0.00017637	9914	DP690-13	152.04	97.884			0.84207	1.0193	NaN	1	0	Median	63135000	32114000	31021000	15579	173	14554	30856	74640;74641;74642;74643	74643		4	9606
VLEEANQAINPK	1	0	Unmodified	1324.6987	0.69867961	1793	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	11	1.41									1	1	1	1	1				13.325	13.325	2	7.9226E-08	6921	DP690-11	204.52	148.09			0.78214	0.78823	11.258	4	0	Linear	1174500000	651810000	522640000	15580	1793	14555	30857;30858;30859;30860;30861	74644;74645;74646;74647;74648;74649;74650;74651;74652;74653;74654;74655;74656;74657	74649		14	9606
VLEEGGFFEEK	1	0	Unmodified	1282.6081	0.60813326	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	13	0													1				17.166	17.166	2	4.7972E-05	11721	DP690-13	179.51	135.16			0.98036	1.1077	NaN	1	0	Median	139120000	73778000	65338000	15581	2194	14556	30862	74658;74659;74660	74660		3	9606
VLEEQAQNLGLEGTLVSLAR	0	1	Unmodified	2139.1535	0.15354711	1402	Q53GL7	PARP10	Poly [ADP-ribose] polymerase 10	yes	yes	0	0	0	3	0			1														21.499	21.499	2	0.013014	16915	DP690-3	101.2	74.576			NaN	NaN	NaN	0	0	Median	0	0	0	15582	1402	14557	30863	74661	74661		1	9606
VLEGNEQFINAAK	1	0	Unmodified	1431.7358	0.73579339	655	P35030	PRSS3	Trypsin-3	yes	yes	0	0	0	4.5	3.5	1							1									15.328	15.328	2	0.0032007	6903	DP690-1	127.76	67.965			NaN	NaN	NaN	0	0	Median	3081800	3081800	0	15583	655	14558	30864;30865	74662;74663;74664	74663		3	9606
VLEGSELELAK	1	0	Unmodified	1186.6445	0.64451877	1301	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	10	0										1							15.819	15.819	2	0.0017946	10825	DP690-10	99.815	37.853			0.78958	0.97415	NaN	1	0	Median	100230000	52584000	47643000	15584	1301	14559	30866	74665	74665		1	9606
VLELAQLLDQIWR	0	1	Unmodified	1595.9035	0.90352742	2304	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	11	0											1						26.249	26.249	2	3.9315E-08	24261	DP690-11	199.68	199.68			0.76899	0.91851	NaN	1	0	Median	2916700	1439100	1477600	15585	2304	14560	30867	74666;74667;74668;74669	74667		4	9606
VLELFESFR	0	1	Unmodified	1138.6023	0.60226003	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9.5	0.5									1	1							20.901	20.901	2	0.0077219	18015	DP690-10	91.853	64.55			0.68195	0.85713	NaN	1	0	Median	12608000	8122000	4486400	15586	2272	14561	30868;30869	74670;74671	74670		2	9606
VLELNASDER	0	1	Unmodified	1144.5724	0.57241646	662	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	14	0														1			13.817	13.817	2	0.00044316	7178	DP690-14	120.31	51.935			1.2617	1.4691	NaN	1	0	Median	174820000	77112000	97703000	15587	662	14562	30870	74672;74673;74674	74672		3	9606
VLELPYQGEELSMVILLPDDIEDESTGLKK	2	0	Oxidation (M)	3388.7211	0.7211207	628	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	1	1	6	0						1											23.019	23.019	3	0.0074612	17379	DP690-6	63.095	27.858			NaN	NaN	NaN	0	0	Median	486700	486700	0	15588	628	14563	30871	74675	74675	867	1	9606
VLEPPEDQENQK	1	0	Unmodified	1424.6783	0.6783381	294	O94851	MICAL2	Protein-methionine sulfoxide oxidase MICAL2	yes	yes	0	0	0	10.5	0.866									1		3						11.958	11.958	2	6.7046E-05	4950	DP690-11	185.6	124.77			NaN	NaN	NaN	0	0	Median	0	0	0	15589	294	14564	30872;30873;30874;30875	74676;74677;74678;74679	74677		4	9606
VLEQLEDLDSR	0	1	Unmodified	1315.662	0.66195975	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	9.75	0.433									1	3							17.472	17.472	2	4.0188E-05	13162	DP690-10	182.39	106.65			0.78889	0.94378	NaN	1	0	Median	213420000	137410000	76006000	15590	591	14565	30876;30877;30878;30879	74680;74681;74682;74683;74684;74685	74680		6	9606
VLEQLIVAHFPMQSR	0	1	Unmodified	1766.9502	0.95016004	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							19.177	19.177	3	8.5644E-07	13874	DP690-9	178.22	158.53			0.77484	0.9347	6.1951	2	0	Median	194670000	124750000	69923000	15591	1046	14566	30880;30881	74686;74687;74688;74689;74690;74691	74690		6	9606
VLEQLIVAHFPMQSR	0	1	Oxidation (M)	1782.9451	0.94507466	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	6.67	3.3		1							2								18.152	18.152	2;3	0.0017981	11444	DP690-2	79.885	46.891			0.75746	0.88709	4.1137	3	0	Median	183840000	102220000	81620000	15592	1046	14566	30882;30883;30884	74692;74693;74694;74695;74696;74697;74698;74699;74700;74701;74702;74703	74693	1644	12	9606
VLEQLTGQTPVFSK	1	0	Unmodified	1545.8403	0.84025847	1006	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	13	3.56								1							1	1	17.594	17.594	2	3.0373E-14	12151	DP690-15	225.55	176.49			0.89372	0.97002	15.911	3	0	Plateau	258680000	133640000	125050000	15593	1006	14567	30885;30886;30887	74704;74705;74706;74707;74708;74709;74710;74711;74712;74713;74714	74705		11	9606
VLEQPVVVQSVGTDGR	0	1	Unmodified	1681.8999	0.89989861	2056	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	14	0														1			15.686	15.686	2	6.8006E-07	9880	DP690-14	145.83	145.83			0.83247	1.0095	NaN	1	0	Median	28137000	18049000	10088000	15594	2056	14568	30888	74715;74716	74715		2	9606
VLESEEQVLVMYHR	0	1	Oxidation (M)	1746.8611	0.86107026	1228	Q13617	CUL2	Cullin-2	yes	yes	0	1	0	3	0			2														16.019	16.019	2;3	0.0044508	9959	DP690-3	100.19	76.706			NaN	NaN	NaN	0	0	Median	36370000	0	36370000	15595	1228	14569	30889;30890	74717;74718;74719;74720	74717	1884	4	9606
VLESEEQVLVMYHR	0	1	Unmodified	1730.8662	0.86615564	1228	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	3	0			1														16.964	16.964	3	0.0055019	11233	DP690-3	94.725	64.393			NaN	NaN	NaN	0	0	Median	16059000	0	16059000	15596	1228	14569	30891	74721;74722	74721		2	9606
VLESVTVHNPENQSYLIAYK	1	0	Unmodified	2303.1798	0.17976186	1551	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	10	0										1							16.831	16.831	3	0.034993	12186	DP690-10	75.564	51.183			NaN	NaN	NaN	0	0	Median	50354000	50354000	0	15597	1551	14570	30892	74723	74723		1	9606
VLETAEDIQER	0	1	Unmodified	1301.6463	0.64630969	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							13.656	13.656	2	4.0075E-06	7550	DP690-10	195.79	166.62			0.72248	0.8936	NaN	1	0	Median	112540000	65829000	46708000	15598	1236	14571	30893	74724;74725	74724		2	9606
VLETELVDHVLQK	1	0	Unmodified	1521.8403	0.84025847	2306	Q9P2K8	EIF2AK4	Eukaryotic translation initiation factor 2-alpha kinase 4	yes	yes	0	0	0	10	0										1							17.624	17.624	3	0.0036525	13318	DP690-10	98.902	40.628			NaN	NaN	NaN	0	0	Median	57241000	57241000	0	15599	2306	14572	30894	74726;74727	74726		2	9606
VLETPQEIHTVSSEAVSLLEEVITPR	0	1	Unmodified	2875.5179	0.51786828	2085	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	11	0											3						25.758	25.758	3	6.2461E-05	23768	DP690-11	96.181	77.684			NaN	NaN	NaN	0	0	Median	3416500	0	3416500	15600	2085	14573	30895;30896;30897	74728;74729;74730;74731	74730		4	9606
VLEVASGSGQHAAHFAR	0	1	Unmodified	1735.8754	0.87541519	1922	Q96S19	C16orf13	UPF0585 protein C16orf13	yes	yes	0	0	0	8	0								1									11.588	11.588	4	0.0021574	4259	DP690-8	71.98	50.038			0.89167	1.0848	NaN	1	0	Median	2783100	1311300	1471800	15601	1922	14574	30898	74732;74733	74732		2	9606
VLEVGALQAVYELER	0	1	Unmodified	1687.9145	0.91448604	332	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	10	0										1							21.587	21.587	2	0.00042765	18944	DP690-10	108.59	108.59			0.88992	1.1085	NaN	1	0	Median	22268000	11039000	11229000	15602	332	14575	30899	74734	74734		1	9606
VLEVPPVVYSR	0	1	Unmodified	1256.7129	0.71287311	64	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	6	0						1											17.739	17.739	2	0.0019993	11365	DP690-6	98.044	73.189			1.0114	1.1405	NaN	1	0	Median	3438000	1736300	1701700	15603	64	14576	30900	74735;74736;74737	74735		3	9606
VLFASQEIPASPFR	0	1	Unmodified	1560.83	0.83002813	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	2	0		1															19.694	19.694	2	4.9118E-05	13195	DP690-2	136.5	115.72			0.67804	0.69942	NaN	1	0	Median	4003700	2112700	1891000	15604	250	14577	30901	74738;74739;74740;74741	74739		4	9606
VLFDKDVNER	1	1	Unmodified	1233.6354	0.63535107	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	1	3	0			1														12.957	12.957	3	0.00029244	5973	DP690-3	112.11	58.51			0.83101	0.92165	NaN	1	0	Median	53740000	28037000	25703000	15605	724	14578	30902	74742;74743;74744;74745	74743		4	9606
VLFEYIPQNEDELELK	1	0	Unmodified	1977.9935	0.99352422	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	11	0											1						20.771	20.771	2	2.0151E-06	17718	DP690-11	141.34	141.34			0.88403	1.0547	NaN	1	0	Median	103280000	53614000	49669000	15606	2501	14579	30903	74746;74747;74748;74749	74748		4	9606
VLFLFEFDEQGR	0	1	Unmodified	1498.7456	0.7456298	306	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	12	0												2					14.726	14.726	3	0.011619	8583	DP690-12	84.507	12.218			NaN	NaN	NaN	0	0	Median	0	0	0	15607	306	14580	30904;30905	74750;74751	74750		2	9606
VLFPGCTPPACLLDGLVR	0	1	Unmodified	1984.0274	0.027424084	1457	Q66K74	MAP1S	Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain	yes	yes	0	0	0	11	0											1						22.954	22.954	2	0.0061292	20448	DP690-11	130.56	84.912			NaN	NaN	NaN	0	0	Median	0	0	0	15608	1457	14581	30906	74752	74752		1	9606
VLFPGNAPQNK	1	0	Unmodified	1183.635	0.63495714	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								13.854	13.854	2	0.0031788	6916	DP690-9	129.47	70.684			NaN	NaN	NaN	0	0	Median	13820000	13820000	0	15609	1048	14582	30907	74753;74754	74754		2	9606
VLFPGNSTQYNILEGLEK	1	0	Unmodified	2021.047	0.046956778	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	9.5	0.5									1	1							21.511	21.511	2	6.2912E-13	18805	DP690-10	182.72	129.93			1.1827	1.4657	26.214	2	0	Median	78052000	37755000	40298000	15610	763	14583	30908;30909	74755;74756;74757;74758;74759;74760	74757		6	9606
VLFRPSDTANSSNQDALSSNTSLK	1	1	Unmodified	2551.2514	0.25142326	1656	Q8N4V1	MMGT1	Membrane magnesium transporter 1	yes	yes	0	0	1	16	0																1	15.189	15.189	3	1.6931E-06	8822	DP690-16	130.83	103.99			0.60331	0.69128	NaN	1	0	Median	11045000	7267800	3777300	15611	1656	14584	30910	74761;74762	74762		2	9606
VLFSSNGGVVK	1	0	Unmodified	1105.6132	0.61315906	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	9.67	4.03				1								1	1				14.775	14.775	2	9.193E-05	8234	DP690-4	130.56	130.56			0.87176	0.9214	8.8006	3	0	Median	2142899999.9999998	1148200000	994610000	15612	595	14585	30911;30912;30913	74763;74764;74765;74766;74767;74768;74769;74770;74771;74772;74773;74774;74775;74776	74775		14	9606
VLFTSLADNK	1	0	Unmodified	1106.5972	0.59717465	1694	Q8NF91	SYNE1	Nesprin-1	yes	yes	0	0	0	8	4				1								1					16.084	16.084	2	0.0059743	10411	DP690-12	89.296	43.167			0.8611	0.88572	9.4143	2	0	Median	1678399999.9999998	892470000	785920000	15613	1694	14586	30914;30915	74777;74778;74779;74780;74781;74782	74778		6	9606
VLGALLPFLDAQYQK	1	0	Unmodified	1674.9345	0.9344932	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								22.895	22.895	2	0.0016314	18245	DP690-9	133.89	100.02			NaN	NaN	NaN	0	0	Median	1568000	1568000	0	15614	1453	14587	30916	74783;74784	74783		2	9606
VLGATLLPDLIQK	1	0	Unmodified	1379.8388	0.8388019	900	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	3	0			1														20.987	20.987	2	0.0026264	16353	DP690-3	90.827	61.06			1.9332	2.0278	NaN	1	0	Median	5031900	1787300	3244700	15615	900	14588	30917	74785;74786	74785		2	9606
VLGEAMTGISQNAK	1	0	Oxidation (M)	1433.7184	0.71842877	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	1	0	2	0		1															12.723	12.723	2	7.906E-06	4983	DP690-2	179.57	148.75			1.2039	1.2098	NaN	1	0	Median	7137200	3144300	3992900	15616	2482	14589	30918	74787;74788;74789;74790;74791;74792	74791	2923	6	9606
VLGELWPLFGGR	0	1	Unmodified	1342.7398	0.73975656	606	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	9	0									1								23.097	23.097	2	0.0049181	18426	DP690-9	85.862	55.47			0.71815	0.87341	NaN	1	0	Median	1976400	1150200	826240	15617	606	14590	30919	74793;74794	74793		2	9606
VLGENYTLEDEEDSQICTVGR	0	1	Unmodified	2426.0907	0.09074844	1314	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	11	0											1						18.093	18.093	2	0.035303	13849	DP690-11	119.77	95.932			NaN	NaN	NaN	0	0	Median	0	0	0	15618	1314	14591	30920	74795	74795		1	9606
VLGGLLGGHSLAIMLK	1	0	Oxidation (M)	1593.9276	0.92763369	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	1	0	3	0			1														18.845	18.845	3	0.021632	13623	DP690-3	79.804	33.741			NaN	NaN	NaN	0	0	Median	14284000	0	14284000	15619	2061	14592	30921	74796	74796	2582	1	9606
VLGGNQTLTVNVEGTK	1	0	Unmodified	1628.8733	0.87334951	1539	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	12	0												1					15.695	15.695	2	1.9311E-07	9968	DP690-12	172.09	141.89			0.89992	1.0817	NaN	1	0	Median	22180000	9910700	12270000	15620	1539	14593	30922	74797;74798;74799;74800	74797		4	9606
VLGGSFADQK	1	0	Unmodified	1020.524	0.52400971	1803;93	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	no	no	0	0	0	2	0		1															13.354	13.354	2	0.024776	5790	DP690-2	96.668	33.52			NaN	NaN	NaN	0	0	Median	0	0	0	15621	1803;93	14594	30923	74801	74801		1	9606
VLGIQVDTDGSGR	0	1	Unmodified	1315.6732	0.67319314	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	5.8	3.49			3						1		1						16.048	16.048	2	1.5988E-06	10915	DP690-11	194.94	160.75			0.8496	0.8953	4.4941	3	0	Plateau	693320000	347600000	345720000	15622	652	14595	30924;30925;30926;30927;30928	74802;74803;74804;74805;74806;74807;74808;74809;74810;74811;74812;74813;74814	74804		13	9606
VLGLGLGCLR	0	1	Unmodified	1056.6114	0.61138492	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	0	15	0															4		18.802	18.802	2	0.00043381	13757	DP690-15	160.03	74.668			NaN	NaN	NaN	0	0	Median	114060000	0	114060000	15623	1983	14596	30929;30930;30931;30932	74815;74816;74817;74818	74817		4	9606
VLGLLGALDPYK	1	0	Unmodified	1257.7333	0.7332742	727	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	2	0		1															21.919	21.919	2	0.03233	15614	DP690-2	89.886	50.581			NaN	NaN	NaN	0	0	Median	592650	592650	0	15624	727	14597	30933	74819	74819		1	9606
VLGNTSGLLQLLFNR	0	1	Unmodified	1643.9359	0.93589019	292	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	6	4		2								2							24.125	24.125	2	0.00011354	22141	DP690-10	152.67	106.76			NaN	NaN	NaN	0	0	Median	4386400	0	4386400	15625	292	14598	30934;30935;30936;30937	74820;74821;74822;74823;74824	74820		5	9606
VLGQSSSKPAAAATGPPPGNTSSTQK	2	0	Unmodified	2438.2401	0.24013029	2104	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	1	10	0										1							10.696	10.696	3	6.3311E-05	3294	DP690-10	110.25	86.357			0.62474	0.78447	NaN	1	0	Median	39549000	24666000	14883000	15626	2104	14599	30938	74825;74826	74825		2	9606
VLGQVSCELVSPK	1	0	Unmodified	1414.749	0.74900062	1123	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	0	0	12	0												1					15.963	15.963	2	3.264E-05	10420	DP690-12	144.17	117.06			0.74543	0.88811	NaN	1	0	Median	45955000	25054000	20901000	15627	1123	14600	30939	74827;74828	74828		2	9606
VLGSSTSATNSTSVSSR	0	1	Unmodified	1639.8013	0.80130678	1305	Q15004	KIAA0101	PCNA-associated factor	yes	yes	0	0	0	12	4								1								1	11.372	11.372	2	4.148E-06	4012	DP690-8	133.32	99.455			0.80538	0.92535	NaN	1	0	Median	2233500	512130	1721400	15628	1305	14601	30940;30941	74829;74830;74831;74832;74833;74834;74835	74833		7	9606
VLGTAFDPFLGGK	1	0	Unmodified	1320.7078	0.70778773	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														20.5	20.5	2	0.00013911	15732	DP690-3	142.83	109.64			0.88981	0.93943	NaN	1	0	Median	38564000	19640000	18924000	15629	1778	14602	30942	74836;74837;74838;74839	74837		4	9606
VLGTEDLYDYIDKYNIELDPR	1	1	Unmodified	2543.2431	0.24314998	1035	P68400	CSNK2A1	Casein kinase II subunit alpha	yes	yes	0	0	1	6	0						1											22.155	22.155	3	0.0079875	16485	DP690-6	56.9	39.67			0.931	1.0434	NaN	1	0	Median	2390600	1257900	1132700	15630	1035	14603	30943	74840;74841	74841		2	9606
VLGTPVETIELTEDR	0	1	Unmodified	1670.8727	0.87268081	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															18.659	18.659	2	0.00081401	12111	DP690-2	101.39	76.536			1.1383	1.166	NaN	1	0	Median	3431500	1768300	1663200	15631	602	14604	30944	74842	74842		1	9606
VLGTPVETIELTEDRR	0	2	Unmodified	1826.9738	0.97379183	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	1	2	0		1															16.909	16.909	3	8.6669E-13	9926	DP690-2	203.29	180.15			1.2123	1.2108	NaN	1	0	Median	42649000	17735000	24914000	15632	602	14605	30945	74843;74844;74845;74846;74847;74848;74849	74843		7	9606
VLGTSPEAIDSAENR	0	1	Unmodified	1557.7635	0.76346471	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															14.473	14.473	2	6.8644E-10	7082	DP690-2	206.36	143.28			1.1646	1.2122	NaN	1	0	Median	39869000	19577000	20291000	15633	602	14606	30946	74850;74851;74852;74853;74854;74855	74854		6	9606
VLGVLEVSR	0	1	Unmodified	970.58113	0.58113065	2087	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	9	4					1								1				16.441	16.441	2	0.019758	10824	DP690-13	79.713	37.425			0.87293	0.9609	0.25977	2	0	Median	191510000	102420000	89093000	15634	2087	14607	30947;30948	74856;74857;74858;74859	74856		4	9606
VLGVPIIVQASQAEK	1	0	Unmodified	1550.9032	0.90319307	1277	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	12	0												1					18.929	18.929	2	0.0012454	14446	DP690-12	93.345	93.345			0.81359	0.97466	NaN	1	0	Median	31117000	17627000	13489000	15635	1277	14608	30949	74860;74861;74862;74863;74864	74861		5	9606
VLGVPPPQIFWK	1	0	Unmodified	1379.7965	0.79654316	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	10	1									1		1						20.639	20.639	2	0.00023632	17400	DP690-11	141.52	141.52			0.61291	0.72837	4.1473	2	0	Median	170770000	102300000	68470000	15636	1758	14609	30950;30951	74865;74866;74867;74868;74869;74870;74871;74872	74865		8	9606
VLHEAEGHIVTCETNTGEVYR	0	1	Unmodified	2413.1332	0.13322238	981	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	16	0																2	13.332	13.332	3;4	6.4849E-07	6343	DP690-16	134.08	104.94			0.86051	0.95757	NaN	1	0	Median	74358000	42036000	32322000	15637	981	14610	30952;30953	74873;74874;74875;74876;74877	74874		5	9606
VLHFYNVK	1	0	Unmodified	1018.56	0.56000128	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	3	0			1														13.573	13.573	2	0.032162	6727	DP690-3	104.11	74.735			NaN	NaN	NaN	0	0	Median	5320600	0	5320600	15638	883	14611	30954	74878	74878		1	9606
VLHNAQEVEKEPGQR	1	1	Unmodified	1732.8856	0.88564553	814	P49916	LIG3	DNA ligase 3	yes	yes	0	0	1	9	0									1								10.264	10.264	4	0.055151	2487	DP690-9	41.743	24.524			0.86388	1.0019	NaN	1	0	Median	2645200	1268300	1376900	15639	814	14612	30955	74879;74880	74879		2	9606
VLHVSENPVPLTVR	0	1	Unmodified	1558.8831	0.88312633	1645	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	12	0												1					15.329	15.329	3	0.037263	9455	DP690-12	55.899	25.416			NaN	NaN	NaN	0	0	Median	37025000	37025000	0	15640	1645	14613	30956	74881;74882	74881		2	9606
VLHYLAIQKPADLAR	1	1	Unmodified	1706.9832	0.98317473	1315	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	1	3	0			1														14.88	14.88	4	0.0055688	8566	DP690-3	68.168	56.476			1.2712	1.4098	NaN	1	0	Median	11561000	5032800	6527800	15641	1315	14614	30957	74883;74884	74883		2	9606
VLIAAHGNSLR	0	1	Unmodified	1149.6618	0.66184059	530	P18669;P15259	PGAM1;PGAM2	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2	yes	no	0	0	0	7	0							1										11.605	11.605	3	8.4682E-05	4219	DP690-7	121.6	121.6			1.8353	2.0995	NaN	1	0	Median	5722600	1322700	4399900	15642	530	14615	30958	74885;74886;74887;74888	74886		4	9606
VLIEGSINSVR	0	1	Unmodified	1185.6717	0.67173657	917	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	0	0	12	4								1								1	15.435	15.435	2	4.8342E-05	9072	DP690-16	179.37	107.99			0.91214	1.0479	11.084	2	0	Median	91351000	50622000	40729000	15643	917	14616	30959;30960	74889;74890;74891;74892;74893	74890		5	9606
VLIFSQMTK	1	0	Oxidation (M)	1081.5842	0.58416712	1297	Q14839;Q8TDI0;Q12873	CHD4;CHD5;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3	yes	no	0	1	0	10	0										1							15.276	15.276	2	0.032018	9919	DP690-10	80.165	48.862			0.78996	0.97517	NaN	1	0	Median	118700000	71161000	47540000	15644	1297	14617	30961	74894	74894	1985	1	9606
VLIGENEK	1	0	Unmodified	900.49165	0.49164694	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						11.601	11.601	2	0.066621	4352	DP690-11	108.09	44.781			0.78387	0.81858	NaN	1	0	Median	580950000	328870000	252080000	15645	897	14618	30962	74895	74895		0	9606
VLIGENEKAER	1	1	Unmodified	1256.6725	0.67246486	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	9	3.16			1						1	1	1	1					10.647	10.647	3	0.00010275	2908	DP690-9	125.74	103.41			0.8536	0.99087	6.9881	3	0	Median	240530000	113900000	126630000	15646	897	14619	30963;30964;30965;30966;30967	74896;74897;74898;74899;74900;74901;74902;74903;74904	74901		9	9606
VLIIGSGGR	0	1	Unmodified	870.5287	0.52870115	559	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	4	1			1		1												14.107	14.107	2	0.006778	6876	DP690-5	120.46	41.841			NaN	NaN	NaN	0	0	Median	143890000	0	143890000	15647	559	14620	30968;30969	74905;74906;74907;74908;74909	74909		5	9606
VLIKPEIQNNQK	2	0	Unmodified	1422.8195	0.81946344	2155	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	1	10	0										1							11.934	11.934	3	0.00065516	5035	DP690-10	98.754	63.077			0.79384	0.96139	NaN	1	0	Median	119120000	63211000	55914000	15648	2155	14621	30970	74910;74911;74912	74910		3	9606
VLIPIHEANR	0	1	Unmodified	1160.6666	0.66659162	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										2							13.32	13.32	3	0.0055907	7058	DP690-10	99.013	55.93			NaN	NaN	NaN	0	0	Median	16955000	16955000	0	15649	1901	14622	30971;30972	74913;74914	74913		2	9606
VLIPVFALGR	0	1	Unmodified	1083.6805	0.68045077	1442	Q5TA45	CPSF3L	Integrator complex subunit 11	yes	yes	0	0	0	8	4				1								1					21.305	21.305	2	0.00066613	17559	DP690-12	113.89	113.89			1.0344	1.2168	40.783	2	0	Median	27943000	15180000	12764000	15650	1442	14623	30973;30974	74915;74916;74917;74918;74919;74920;74921;74922;74923	74920		9	9606
VLIQVGYEPLPPTIGR	0	1	Unmodified	1750.9982	0.99815609	2517	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	12	3.56							1							1	1		19.718	19.718	2	4.4836E-12	15174	DP690-14	198.52	171.86			0.65765	0.75504	15.369	2	0	Median	183500000	113530000	69969000	15651	2517	14624	30975;30976;30977	74924;74925;74926;74927;74928;74929;74930;74931;74932;74933	74924		10	9606
VLISDSLDPCCR	0	1	Unmodified	1433.6643	0.66428471	167	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	4	0				1													16.897	16.897	2	1.6132E-05	11031	DP690-4	191.45	158.19			1.1067	1.2337	NaN	1	0	Median	36692000	15710000	20982000	15652	167	14625	30978	74934;74935	74934		2	9606
VLITTDLLAR	0	1	Unmodified	1113.6758	0.67575932	927;1266	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	9	4					1								1				18.741	18.741	2	0.00014609	13946	DP690-13	136.27	136.27			1.0017	1.1135	NaN	1	0	Median	387870000	193690000	194180000	15653	927;1266	14626	30979;30980	74936;74937;74938;74939	74938		4	9606
VLKDQPPNSVEGLLNALR	1	1	Unmodified	1962.0898	0.089824645	2226	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	1	6	0						1											20.236	20.236	3	0.007211	14350	DP690-6	61.102	38.003			0.79376	0.88957	NaN	1	0	Median	3241300	1749800	1491500	15654	2226	14627	30981	74940;74941;74942	74940		3	9606
VLKQVHPDTGISSK	2	0	Unmodified	1507.8358	0.83584179	224;399	P57053;O60814;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;Q99880;Q96A08;P06899;Q16778;P33778;P23527;Q8N257	H2BFS;HIST1H2BK;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BA;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-A;Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B	no	no	0	0	1	16	0																2	10.321	10.321	3;4	0.0037341	2769	DP690-16	107.46	66.969			NaN	NaN	NaN	0	0	Median	61507000	0	61507000	15655	224;399	14628	30982;30983	74943;74944	74944		2	9606
VLLATLSIPITPER	0	1	Unmodified	1521.913	0.91302948	1252	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	6	4		1								1							20.807	20.807	2	4.8414E-09	17801	DP690-10	198.62	198.62			0.95493	1.0775	6.0805	2	0	Median	80360000	40396000	39964000	15656	1252	14629	30984;30985	74945;74946;74947;74948;74949;74950;74951;74952;74953	74947		9	9606
VLLDIFTGVR	0	1	Unmodified	1131.6652	0.66519463	814	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	11	0											1						21.315	21.315	2	0.025789	18449	DP690-11	96.331	50.651			NaN	NaN	NaN	0	0	Median	3885700	0	3885700	15657	814	14630	30986	74954	74954		1	9606
VLLDLSAFLK	1	0	Unmodified	1117.6747	0.67469669	1390	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	14	0														1			23.369	23.369	2	0.0062229	19744	DP690-14	88.948	47.296			0.85552	1.0134	NaN	1	0	Median	12326000	6634400	5691500	15658	1390	14631	30987	74955;74956;74957;74958	74956		4	9606
VLLESEQFLTELTR	0	1	Unmodified	1676.8985	0.89850163	687	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	12	4								1								1	21.955	21.955	2	3.577E-16	15673	DP690-8	268.77	207.12			0.86005	0.97607	7.0494	2	0	Median	81015000	43254000	37761000	15659	687	14632	30988;30989	74959;74960;74961;74962;74963;74964	74964		6	9606
VLLESEQFLTELTR	0	1	Acetyl (Protein N-term)	1718.9091	0.90906631	687	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	1	0	0	16	0																2	26.98	26.98	2	4.484E-10	20653	DP690-16	212.89	137.97			NaN	NaN	NaN	0	0	Median	0	0	0	15660	687	14632	30990;30991	74965;74966	74965		2	9606
VLLFSLPHPEALLAQQPPDAVKPAIYK	2	0	Unmodified	2954.6634	0.66335073	1734	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	1	11	0											1						20.559	20.559	4	0.011207	17350	DP690-11	42.806	42.806			0.44845	0.51979	NaN	1	0	Median	77654000	53690000	23963000	15661	1734	14633	30992	74967;74968	74967		2	9606
VLLLSSPGLEELYR	0	1	Unmodified	1587.8872	0.88720866	1641	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	7	4			1								1						21.163	21.163	2	2.5067E-05	18194	DP690-11	136.49	121.16			1.053	1.2726	NaN	1	0	Median	22194000	7871900	14322000	15662	1641	14634	30993;30994	74969;74970;74971	74969		3	9606
VLLPVLLNK	1	0	Unmodified	1007.6743	0.67430276	68	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	12	0												1					19.417	19.417	2	0.0017293	14976	DP690-12	117.93	117.93			0.75666	0.90573	NaN	1	0	Median	32296000	18418000	13877000	15663	68	14635	30995	74972;74973;74974;74975	74972		4	9606
VLLQASQDENFGNTTPR	0	1	Unmodified	1888.9279	0.92790427	912	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	11	0											3						15.91	15.91	2	3.2527E-12	10810	DP690-11	247.29	177.64			NaN	NaN	NaN	0	0	Median	22233000	0	22233000	15664	912	14636	30996;30997;30998	74976;74977;74978	74978		3	9606
VLLSALER	0	1	Unmodified	899.54402	0.54401687	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7	4			1								1						16.311	16.311	2	0.03973	10345	DP690-3	127.12	16.484			0.89488	0.94796	1.1485	2	0	Median	716280000	365250000	351020000	15665	470	14637	30999;31000	74979;74980	74980		0	9606
VLLVGADNFTLLGKPLLGK	2	0	Unmodified	1967.1819	0.18193412	1538	Q7Z2W9	MRPL21	39S ribosomal protein L21, mitochondrial	yes	yes	0	0	1	16	0																2	21.32	21.32	3	0.0011047	16209	DP690-16	137.27	120.25			NaN	NaN	NaN	0	0	Median	3491600	3491600	0	15666	1538	14638	31001;31002	74981;74982;74983	74982		3	9606
VLMAQHFDEVWNSEACNK	1	0	Oxidation (M)	2192.9619	0.96192329	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	1	0	12	0												1					16.277	16.277	3	0.0036616	10786	DP690-12	69.935	57.555			1.0765	1.2561	NaN	1	0	Median	100100000	49646000	50458000	15667	751	14639	31003	74984	74984	1113	1	9606
VLMAQHFDEVWNSEACNK	1	0	Unmodified	2176.967	0.96700867	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	12	0												1					17.516	17.516	3	0.045214	12620	DP690-12	66.12	42.078			NaN	NaN	NaN	0	0	Median	28651000	0	28651000	15668	751	14639	31004	74985	74985		1	9606
VLMQELVTLIEQR	0	1	Unmodified	1570.8753	0.87526376	1650	Q8N3F8	MICALL1	MICAL-like protein 1	yes	yes	0	0	0	11	0											2						24.071	24.071	2	0.00012585	21806	DP690-11	122.51	122.51			0.73758	0.89208	NaN	1	0	Median	3966200	2114300	1852000	15669	1650	14640	31005;31006	74986;74987;74988	74986		3	9606
VLNEAVGAMMYHTITLTR	0	1	2 Oxidation (M)	2051.018	0.01798161	908	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	2	0	13	0													1				15.649	15.649	3	8.8008E-06	9658	DP690-13	125.61	99.782			0.88638	1.0367	NaN	1	0	Median	147110000	78062000	69047000	15670	908	14641	31007	74989;74990;74991;74992	74991	1403;1404	4	9606
VLNEECDQNWYK	1	0	Unmodified	1596.6879	0.68785692	1010	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	0	11	4							1								1		15.468	15.468	2	1.463E-06	8859	DP690-7	195.79	163.06			0.64296	0.72555	22.1	2	0	Median	38805000	22250000	16555000	15671	1010	14642	31008;31009	74993;74994;74995;74996;74997	74995		5	9606
VLNGNQQVVDTSLK	1	0	Unmodified	1513.81	0.81002097	1544	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	13	0													1				14.351	14.351	2	6.9207E-06	7839	DP690-13	178.53	122.27			0.77011	0.89416	NaN	1	0	Median	34792000	18796000	15996000	15672	1544	14643	31010	74998;74999;75000;75001	75000		4	9606
VLNLPPNTIMEYK	1	0	Oxidation (M)	1546.8065	0.8065155	212	O60573	EIF4E2	Eukaryotic translation initiation factor 4E type 2	yes	yes	0	1	0	15	0															1		17.057	17.057	2	0.0073096	11482	DP690-15	85.963	64.931			0.79102	0.93371	NaN	1	0	Median	25459000	15628000	9831300	15673	212	14644	31011	75002;75003;75004;75005	75003	218	4	9606
VLNMMPEEK	1	0	Oxidation (M)	1105.5148	0.51476693	1983	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	1	0	15	0															2		12.224	12.224	2	0.0011608	5046	DP690-15	139.97	108.44			0.83513	0.98451	16.037	2	0	Median	58151000	29030000	29121000	15674	1983	14645	31012;31013	75006;75007;75008;75009;75010;75011;75012;75013	75010	2525	8	9606
VLNSLTQQEK	1	0	Unmodified	1158.6245	0.62445203	1772	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	2	0		1															12.317	12.317	2	0.0045667	4501	DP690-2	91.265	40.073			1.7288	1.7336	NaN	1	0	Median	4972000	1540900	3431100	15675	1772	14646	31014	75014;75015;75016	75014		3	9606
VLNSYWVGEDSTYK	1	0	Unmodified	1659.7781	0.77805214	949	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	15	0															1		17.336	17.336	2	4.1281E-05	11845	DP690-15	134.3	134.3			0.94361	1.1129	NaN	1	0	Median	17792000	8454000	9337900	15676	949	14647	31015	75017;75018;75019	75019		3	9606
VLNTNIDGR	0	1	Unmodified	1000.5302	0.53015772	973	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	13.3	3.77								1								2	12.49	12.49	2	0.00016608	5181	DP690-16	168.23	126.58			0.95836	1.0402	8.8809	3	0	Median	756010000	385860000	370140000	15677	973	14648	31016;31017;31018	75020;75021;75022;75023;75024;75025;75026;75027;75028;75029	75020		10	9606
VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR	0	2	Unmodified	3506.7318	0.73177723	1524	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	1	11	0											1						22.409	22.409	3	8.5038E-05	19798	DP690-11	75.005	61.564			NaN	NaN	NaN	0	0	Median	7341500	0	7341500	15678	1524	14649	31019	75030;75031	75030		2	9606
VLPAVGISYVVYENMK	1	0	Oxidation (M)	1796.9383	0.93825795	1479	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	1	0	13	0													1				19.783	19.783	2	0.0013281	15098	DP690-13	98.902	74.626			0.89616	1.0234	NaN	1	0	Median	10377000	4098600	6278700	15679	1479	14650	31020	75032;75033	75032	2168	2	9606
VLPGMHHPIQMKPADSEK	2	0	2 Oxidation (M)	2046.0027	0.002665897	1795	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	2	1	10.8	3.43				1								2	2				10.098	10.098	4;5	0.0017141	2217	DP690-13	72.583	44.552			0.70027	0.80742	10.785	4	0	Median	84410000	64273000	20137000	15680	1795	14651	31021;31022;31023;31024;31025	75034;75035;75036;75037;75038;75039;75040;75041;75042	75039	2371;2372	9	9606
VLPIMFPALYR	0	1	Oxidation (M)	1334.7421	0.74206475	1291	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	1	0	4	0				1													21.016	21.016	2	0.0032234	15816	DP690-4	98.523	78.526			0.71627	0.83415	NaN	1	0	Median	10742000	6109500	4632800	15681	1291	14652	31026	75043;75044	75044	1977	2	9606
VLPLEALVTDAGEVTEAGK	1	0	Unmodified	1911.0201	0.020073325	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	8.25	3.63		1								2	1						23.571	23.571	2	3.8927E-13	21320	DP690-10	181.76	181.76			0.78741	0.9533	58.975	4	0	Median	115380000	72075000	43307000	15682	1782	14653	31027;31028;31029;31030	75045;75046;75047;75048;75049;75050;75051;75052;75053;75054	75049		10	9606
VLPPPAGYVPIR	0	1	Unmodified	1277.7496	0.74959297	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	10	0										1							17.114	17.114	2	8.1106E-05	12520	DP690-10	114.28	95.303			0.48537	0.60782	NaN	1	0	Median	56500000	46347000	10153000	15683	263	14654	31031	75055;75056	75056		2	9606
VLPQLISTITASVQNPALR	0	1	Unmodified	2020.1681	0.16807497	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	9.5	0.5									1	1							22.739	22.739	2	1.5353E-22	20299	DP690-10	219.89	204.51			0.77826	0.97332	NaN	1	0	Median	36078000	21115000	14963000	15684	1782	14655	31032;31033	75057;75058;75059	75058		3	9606
VLPSFWIPSLTPEAK	1	0	Unmodified	1683.9236	0.92359417	2454	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	14	0														1			22.555	22.555	2	2.5503E-05	18760	DP690-14	160.72	141.12			0.65269	0.79433	NaN	1	0	Median	41143000	24760000	16383000	15685	2454	14656	31034	75060;75061;75062;75063	75060		4	9606
VLPSITTEILK	1	0	Unmodified	1212.7329	0.73293985	660	P35232	PHB	Prohibitin	yes	yes	0	0	0	15	0															1		19.076	19.076	2	0.0048484	13918	DP690-15	88.496	62.112			0.75492	0.83323	NaN	1	0	Median	154050000	88338000	65709000	15686	660	14657	31035	75064;75065	75065		2	9606
VLPSIVNEVLK	1	0	Unmodified	1209.7333	0.7332742	1948	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	14	0														1			20.071	20.071	2	0.0013052	15605	DP690-14	104.05	90.456			0.8558	1.0019	NaN	1	0	Median	185900000	98805000	87097000	15687	1948	14658	31036	75066;75067;75068;75069	75069		4	9606
VLPTYDASK	1	0	Unmodified	992.51786	0.51786169	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							12.841	12.841	2	0.0045213	6332	DP690-10	101.72	58.852			1.0913	1.2211	NaN	1	0	Median	553110000	273810000	279300000	15688	250	14659	31037	75070;75071;75072;75073	75071		4	9606
VLQALEGLK	1	0	Unmodified	969.58588	0.58588168	697	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	12	4								1								1	16.406	16.406	2	0.00075779	10341	DP690-16	135.77	57.151			1.0125	1.0964	10.272	2	0	Median	295540000	149730000	145810000	15689	697	14660	31038;31039	75074;75075;75076;75077;75078;75079;75080;75081	75077		8	9606
VLQALGSEPIQYAVPVVK	1	0	Unmodified	1910.0877	0.08769938	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						19.599	19.599	2	1.3049E-09	15962	DP690-11	151.7	123.08			0.65926	0.78309	NaN	1	0	Median	109300000	63855000	45447000	15690	65	14661	31040	75082;75083;75084;75085;75086;75087	75083		6	9606
VLQCHKPVHAEYLEK	2	0	Unmodified	1849.9509	0.95088832	1701	Q8NFP7;A0A024RBG1;Q9NZJ9	NUDT10;NUDT4	Diphosphoinositol polyphosphate phosphohydrolase 3-alpha;Diphosphoinositol polyphosphate phosphohydrolase 2	no	no	0	0	1	7.5	0.5							1	1									10.391	10.391	4	0.00021688	2938	DP690-8	103.3	80.312			0.63877	0.69809	23.949	2	0	Median	117310000	70392000	46918000	15691	1701	14662	31041;31042	75088;75089;75090;75091;75092	75090		5	9606
VLQDLVMDILR	0	1	Oxidation (M)	1329.7326	0.73262227	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	0	8.5	3.28			1						1		2						22.717	22.717	2	0.00039991	19822	DP690-11	121.83	71.223			0.78194	0.94824	5.7475	2	0	Median	91831000	42628000	49203000	15692	877	14663	31043;31044;31045;31046	75093;75094;75095;75096;75097;75098;75099;75100;75101;75102;75103	75096	1332	11	9606
VLQDLVMDILR	0	1	Unmodified	1313.7377	0.73770765	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	11	0											1						23.586	23.586	2	8.6741E-06	21179	DP690-11	194.06	139.28			0.84287	1.0058	NaN	1	0	Median	35823000	19978000	15845000	15693	877	14663	31047	75104;75105;75106;75107;75108;75109	75106		6	9606
VLQEALCVISGVPGLK	1	0	Unmodified	1681.9437	0.94367768	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							21.012	21.012	2	0.00029313	18141	DP690-10	112.08	112.08			1.1943	1.4681	NaN	1	0	Median	44398000	23359000	21039000	15694	1782	14664	31048	75110;75111	75110		2	9606
VLQFLVDQFLTTNIAR	0	1	Unmodified	1877.0411	0.041083539	1162	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	9	0									2								23.953	23.953	2	0.0033143	19419	DP690-9	119.69	66.997			NaN	NaN	NaN	0	0	Median	789880	0	789880	15695	1162	14665	31049;31050	75112;75113	75112		2	9606
VLQGDLVMNVYR	0	1	Oxidation (M)	1421.7337	0.7336849	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	2	0		1															16.585	16.585	2	0.00037638	9593	DP690-2	147.4	111.02			0.88819	0.92219	NaN	1	0	Median	87675000	47009000	40666000	15696	789	14666	31051	75114;75115;75116;75117	75115	1190	4	9606
VLQGDLVMNVYR	0	1	Unmodified	1405.7388	0.73877028	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															18.095	18.095	2	6.3922E-05	11388	DP690-2	153.97	129.13			0.89771	0.93658	NaN	1	0	Median	18792000	9619100	9172800	15697	789	14666	31052	75118;75119;75120;75121	75120		4	9606
VLQHYQESDKGEELGPGNVQK	2	0	Unmodified	2354.1503	0.15025265	2517	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	1	14.2	0.433														3	1		11.995	11.995	3;4	3.4834999999999996E-44	4683	DP690-14	268.65	249.84			0.71475	0.7926	0.79549	3	0	Plateau	1647399999.9999998	968430000	679020000	15698	2517	14667	31053;31054;31055;31056	75122;75123;75124;75125;75126;75127;75128;75129;75130;75131;75132;75133;75134;75135;75136;75137;75138;75139	75133		18	9606
VLQIVTNRDDVQGYAAK	1	1	Unmodified	1889.0007	0.0006752871	339	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	1	11	0											1						14.75	14.75	3	0.0033714	8992	DP690-11	71.692	51.976			0.86414	1.0146	NaN	1	0	Median	94151000	46855000	47296000	15699	339	14668	31057	75140;75141;75142;75143	75140		4	9606
VLQLMLR	0	1	Unmodified	871.53134	0.53134369	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	3	0			1														17.347	17.347	2	0.007959	11766	DP690-3	130.01	55.49			NaN	NaN	NaN	0	0	Median	10249000	10249000	0	15700	652	14669	31058	75144;75145	75145		2	9606
VLQLYPNNK	1	0	Unmodified	1087.6026	0.60259438	1096	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	4	0				1													14.593	14.593	2	0.0042602	8006	DP690-4	102.77	61.995			1.34	1.4661	NaN	1	0	Median	12354000	5752600	6601900	15701	1096	14670	31059	75146;75147	75146		2	9606
VLQLYQITQINHGLMMVGPSGSGK	1	0	2 Oxidation (M)	2602.3247	0.32472832	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	2	0	9	0									1								18.585	18.585	3	0.001621	13129	DP690-9	62.611	24.436			0.8537	1.093	NaN	1	0	Median	13456000	7836000	5620200	15702	1264	14671	31060	75148	75148	1929;1930	1	9606
VLQPHPVTPSDTETR	0	1	Unmodified	1675.8529	0.85294842	911	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	11	0											1						11.889	11.889	3	3.9888E-06	4766	DP690-11	128.22	73.947			NaN	NaN	NaN	0	0	Median	26949000	20999000	5950200	15703	911	14672	31061	75149	75149		1	9606
VLQQGDIGECAEPYMIFK	1	0	Unmodified	2096.9911	0.99109816	1901	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	10	0										1							20.169	20.169	2	0.0022043	16962	DP690-10	81.278	70.558			0.74047	0.90157	NaN	1	0	Median	20358000	11993000	8364600	15704	1901	14673	31062	75150	75150		1	9606
VLQSALAAIR	0	1	Unmodified	1040.6342	0.63422886	1169	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	13.5	0.5													1	1			16.152	16.152	2	9.4793E-05	10427	DP690-14	147.19	72.77			0.89772	1.0712	14.818	2	0	Median	204570000	105330000	99245000	15705	1169	14674	31063;31064	75151;75152;75153;75154;75155;75156	75154		6	9606
VLQSFTVDSSK	1	0	Unmodified	1209.6241	0.62411768	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	6	4		1								1							14.584	14.584	2	0.00011885	7189	DP690-2	134.68	81.89			0.89993	0.90555	NaN	1	0	Median	306150000	301740000	4410600	15706	250	14675	31065;31066	75157;75158;75159;75160;75161	75160		5	9606
VLRPQVTAVAQQNQGEVPEPQDMK	1	1	Oxidation (M)	2677.3494	0.34936316	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	1	5.5	3.5		1							1								14.016	14.016	3	1.3758E-06	7081	DP690-9	132.48	113.76			0.82105	0.8773	4.1285	2	0	Median	38246000	20302000	17943000	15707	1264	14676	31067;31068	75162;75163;75164;75165;75166;75167;75168;75169;75170;75171;75172;75173;75174;75175	75172	1931	14	9606
VLRPQVTAVAQQNQGEVPEPQDMK	1	1	Unmodified	2661.3544	0.35444854	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								15.115	15.115	3	0.00041747	8650	DP690-9	78.428	53.274			0.86229	1.0001	NaN	1	0	Median	5878500	2368700	3509700	15708	1264	14676	31069	75176;75177	75176		2	9606
VLSAPPHFHFGQTNR	0	1	Unmodified	1706.8641	0.86412223	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	13	0													2				13.88	13.88	3;4	2.8066E-05	7731	DP690-13	132.06	114.63			0.83695	0.89812	7.9056	2	0	Median	2467600000	1335700000	1131900000	15709	598	14677	31070;31071	75178;75179;75180;75181;75182;75183	75180		6	9606
VLSEDEEDVDFDIIHNANDTFTVK	1	0	Unmodified	2764.2715	0.27154958	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0.816									1	1	1						20.161	20.161	3	1.7262E-37	16913	DP690-10	216.31	204.39			0.86561	1.0444	2.912	3	0	Plateau	276210000	144990000	131220000	15710	250	14678	31072;31073;31074	75184;75185;75186;75187;75188;75189;75190;75191;75192;75193;75194	75186		11	9606
VLSEQLSQQTALFAEIER	0	1	Unmodified	2061.0742	0.074234161	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									1								20.791	20.791	2	1.4831E-10	15780	DP690-9	190.24	73.402			NaN	NaN	NaN	0	0	Median	0	0	0	15711	2411	14679	31075	75195	75195		1	9606
VLSFIPPDGNFR	0	1	Unmodified	1360.7139	0.71393574	2447	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	13	0													1				19.219	19.219	2	0.017138	14674	DP690-13	99.815	50.755			NaN	NaN	NaN	0	0	Median	41864000	41864000	0	15712	2447	14680	31076	75196	75196		1	9606
VLSGEFQIVNPHLLK	1	0	Unmodified	1692.9563	0.95629128	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	3	0			1														18.187	18.187	3	0.00015366	12800	DP690-3	108.17	108.17			0.87061	0.91982	NaN	1	0	Median	37520000	22665000	14855000	15713	574	14681	31077	75197;75198;75199	75197		3	9606
VLSGISFEVPAGK	1	0	Unmodified	1302.7184	0.71835242	233	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	9	0									1								18.13	18.13	2	0.0075861	12619	DP690-9	77.288	77.288			0.8708	1.1096	NaN	1	0	Median	8522400	5303700	3218700	15714	233	14682	31078	75200	75200		1	9606
VLSIGDGIAR	0	1	Unmodified	999.57129	0.57129425	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	12.8	0.433												1	3				15.771	15.771	2	0.00012379	9989	DP690-12	139.97	76.405			0.79238	0.90414	NaN	1	0	Median	332330000	83380000	248950000	15715	585	14683	31079;31080;31081;31082	75201;75202;75203;75204;75205;75206	75201		6	9606
VLSLPKPTIILSAYQR	1	1	Unmodified	1798.0717	0.071655386	1942	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	1	11	0											1						19.316	19.316	3	0.00089096	15761	DP690-11	86.539	76.07			0.35824	0.43591	NaN	1	0	Median	17888000	12467000	5421200	15716	1942	14684	31083	75207	75207		1	9606
VLSLTMSPDGATVASAAADETLR	0	1	Oxidation (M)	2291.1315	0.13149104	1163	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	1	0	8.25	4.26				2								1	1				19.06	19.06	2	5.7332E-09	14183	DP690-13	166.04	127.02			NaN	NaN	NaN	0	0	Median	0	0	0	15717	1163	14685	31084;31085;31086;31087	75208;75209;75210;75211	75209	1812	4	9606
VLSMAPGLTSVEIIPFR	0	1	Oxidation (M)	1845.007	0.0070062184	316	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	1	0	4	0				1													21.261	21.261	2	0.00053727	16069	DP690-4	109.16	109.16			0.75609	0.87362	NaN	1	0	Median	3410300	1916500	1493800	15718	316	14686	31088	75212;75213;75214;75215	75213	326	4	9606
VLSNRPIMFR	0	2	Oxidation (M)	1247.6809	0.68086147	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	1	1	12	0												1					12.95	12.95	3	0.067343	6094	DP690-12	46.462	10.81			0.83318	0.94469	NaN	1	0	Median	168180000	87331000	80854000	15719	1196	14687	31089	75216	75216		1	9606
VLSNRPIMFR	0	2	Unmodified	1231.6859	0.68594685	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	1	12	0												1					14.002	14.002	3	0.0055998	7513	DP690-12	78.149	55.508			0.81549	0.92463	NaN	1	0	Median	157780000	89272000	68511000	15720	1196	14687	31090	75217;75218	75217		2	9606
VLSPQDQDVQDNPR	0	1	Unmodified	1609.7696	0.76961272	14	A6NJ78	METTL15	Probable methyltransferase-like protein 15	yes	yes	0	0	0	14	0														2			12.456	12.456	2	0.0030824	5341	DP690-14	130.01	84.984			NaN	NaN	NaN	0	0	Median	0	0	0	15721	14	14688	31091;31092	75219;75220	75220		2	9606
VLSQQAASVVK	1	0	Unmodified	1128.6503	0.65027285	627	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	4.5	0.5				1	1												12.588	12.588	2	0.00011212	5168	DP690-5	125.97	93.128			0.94592	0.98089	17.592	2	0	Median	41970000	22322000	19648000	15722	627	14689	31093;31094	75221;75222;75223;75224;75225	75224		5	9606
VLSRPNAQELPSMYQR	0	2	Oxidation (M)	1903.9574	0.95743026	1948	Q99623	PHB2	Prohibitin-2	yes	yes	0	1	1	14	0														1			13.365	13.365	3	0.0024675	6599	DP690-14	73.983	44.26			0.73686	0.86593	NaN	1	0	Median	161900000	96583000	65313000	15723	1948	14690	31095	75226;75227;75228	75226	2480	3	9606
VLSRPNAQELPSMYQR	0	2	Unmodified	1887.9625	0.96251564	1948	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	1	14	0														2			14.715	14.715	3	0.00023288	8535	DP690-14	104.16	71.772			0.58694	0.68975	NaN	1	0	Median	79239000	38509000	40730000	15724	1948	14690	31096;31097	75229;75230;75231;75232	75230		4	9606
VLSSSGSEAAVPSVCFLVPPPNQEAQEAVTR	0	1	Unmodified	3225.5976	0.59759194	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								20.266	20.266	3	0.029046	15140	DP690-9	51.104	25.602			NaN	NaN	NaN	0	0	Median	6486000	6486000	0	15725	1319	14691	31098	75233	75233		1	9606
VLSTNTDDNIGGAHFTETLAQYLASEFQR	0	1	Unmodified	3197.5265	0.52653549	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	12	0												1					23.325	23.325	3	2.5316E-05	19833	DP690-12	87.991	77.57			1.0968	1.3421	NaN	1	0	Median	4893700	2259800	2633900	15726	1147	14692	31099	75234;75235;75236;75237	75234		4	9606
VLSTPDLEVR	0	1	Unmodified	1127.6186	0.61863837	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	7	4			1								1						15.973	15.973	2	0.001199	10794	DP690-11	96.034	63.193			1.2896	1.439	102.98	2	0	Median	282880000	157380000	125500000	15727	877	14693	31100;31101	75238;75239;75240;75241;75242	75238		5	9606
VLSVAEVAATTATPDGGPR	0	1	Unmodified	1810.9425	0.94249171	1295	Q147X3	NAA30	N-alpha-acetyltransferase 30	yes	yes	0	0	0	13	0													1				17.481	17.481	2	2.749E-11	12183	DP690-13	167.22	125.68			0.73792	0.90336	NaN	1	0	Median	33464000	19439000	14025000	15728	1295	14694	31102	75243	75243		1	9606
VLTAEELNAAQTSVAYGCIK	1	0	Unmodified	2137.0725	0.072519601	886	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	9.33	3.77				1								2					18.451	18.451	2	2.0905E-39	13824	DP690-12	241.76	174.69			NaN	NaN	NaN	0	0	Median	7247200	7247200	0	15729	886	14695	31103;31104;31105	75244;75245;75246	75244		3	9606
VLTANSNPSSPSAAK	1	0	Unmodified	1442.7365	0.73652168	2229	Q9NV56	MRGBP	MRG/MORF4L-binding protein	yes	yes	0	0	0	15	0															4		10.646	10.646	2	8.0661E-20	3038	DP690-15	288.15	243.13			1.1329	1.3297	NaN	1	0	Median	34282000	14266000	20016000	15730	2229	14696	31106;31107;31108;31109	75247;75248;75249;75250;75251;75252	75248		6	9606
VLTDAVDDITSIDDFLAVSENHILEDVNK	1	0	Unmodified	3199.5772	0.57723365	657	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	11	0											1						26.255	26.255	3	3.8967E-08	24280	DP690-11	127.53	116.45			0.77638	0.94215	NaN	1	0	Median	5800200	3148500	2651600	15731	657	14697	31110	75253;75254;75255	75254		3	9606
VLTFDLTKYPDANPNPNEQ	1	0	Unmodified	2175.0484	0.048413341	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	1	10	0										2							19.35	19.35	2	1.7084E-63	15634	DP690-10	293.41	227.38			NaN	NaN	NaN	0	0	Median	0	0	0	15732	1285	14698	31111;31112	75256;75257	75256		2	9606
VLTGVAGEDAECHAAK	1	0	Unmodified	1626.7672	0.76716988	320	O95373	IPO7	Importin-7	yes	yes	0	0	0	3	0			2														11.655	11.655	2;3	0.031459	4275	DP690-3	96.64	58.238			1.2464	1.3377	NaN	1	0	Median	20427000	9068900	11358000	15733	320	14699	31113;31114	75258;75259	75259		2	9606
VLTIDPTEFK	1	0	Unmodified	1161.6281	0.62814043	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	8	2.92			1						1	2							18.288	18.288	2	0.00052985	12946	DP690-3	117.81	93.035			1.9654	2.0681	NaN	1	0	Median	85992000	55779000	30212000	15734	878	14700	31115;31116;31117;31118	75260;75261;75262;75263;75264;75265;75266	75265		7	9606
VLTLSEDSPYETLHSFISNAVAPFFK	1	0	Unmodified	2911.4644	0.46437615	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									2								26.226	26.226	3	0.00030139	21911	DP690-9	72.916	59.196			0.63659	0.72783	NaN	1	0	Median	1359200	589620	769630	15735	1264	14701	31119;31120	75267;75268;75269	75268		3	9606
VLTMAPGLITLEIVPFR	0	1	Oxidation (M)	1885.0747	0.074691853	170	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	1	0	4	0				1													23.209	23.209	2	0.017213	18079	DP690-4	70.089	70.089			0.72418	0.79695	NaN	1	0	Median	736710	297150	439550	15736	170	14702	31121	75270;75271	75270	189	2	9606
VLTMPETCR	0	1	Oxidation (M)	1121.5209	0.52091494	1935	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	1	0	3	0			1														10.886	10.886	2	0.080645	3301	DP690-3	67.897	44.855			1.1577	1.2909	NaN	1	0	Median	6406700	3159400	3247300	15737	1935	14703	31122	75272	75272		1	9606
VLTQLLLNSDHR	0	1	Unmodified	1407.7834	0.78341229	1429	Q5SWX8	ODR4	Protein odr-4 homolog	yes	yes	0	0	0	13	0													1				16.211	16.211	3	0.0018161	10517	DP690-13	84.821	59.946			0.7618	0.92063	NaN	1	0	Median	69474000	38694000	30780000	15738	1429	14704	31123	75273	75273		1	9606
VLTTTALSTVSSGVQR	0	1	Unmodified	1618.889	0.88899957	236	O75122	CLASP2	CLIP-associating protein 2	yes	yes	0	0	0	10	0										1							16.433	16.433	2	0.00078231	11624	DP690-10	125.54	125.54			1.3207	1.6489	NaN	1	0	Median	28411000	13979000	14432000	15739	236	14705	31124	75274	75274		1	9606
VLTVINQTQK	1	0	Unmodified	1142.6659	0.66592292	733	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	0	8.33	6.13	1							1								1	13.125	13.125	2	7.4331E-05	6034	DP690-16	226.47	188.92			0.94253	1.0855	5.5211	3	0	Plateau	316940000	163220000	153720000	15740	733	14706	31125;31126;31127	75275;75276;75277;75278;75279;75280;75281;75282;75283;75284;75285	75280		11	9606
VLTVINQTQKENLR	1	1	Unmodified	1654.9366	0.93661847	733	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	1	16	0																2	13.413	13.413	2;3	7.0233E-07	6506	DP690-16	190.1	154.98			0.92958	0.99598	NaN	1	0	Median	75330000	41451000	33880000	15741	733	14707	31128;31129	75286;75287;75288;75289;75290;75291	75289		6	9606
VLTVINQTQKENLRK	2	1	Unmodified	1783.0316	0.031581485	733	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	2	16	0																1	11.75	11.75	4	0.0018363	4511	DP690-16	90.759	72.892			1.4442	1.5954	NaN	1	0	Median	14024000	5610900	8413500	15742	733	14708	31130	75292;75293	75292		2	9606
VLVDQTTGLSR	0	1	Unmodified	1187.651	0.65100113	1346	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	14.5	0.5														1	1		14	14	2	3.0013E-05	7437	DP690-14	186.16	74.991			0.95811	1.0874	29.007	2	0	Median	487990000	269510000	218480000	15743	1346	14709	31131;31132	75294;75295;75296;75297;75298;75299	75296		6	9606
VLVDSSFGQPTTQGEAR	0	1	Unmodified	1790.8799	0.87989145	1153	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	9.5	0.5									1	1							15.484	15.484	2	1.5414000000000001E-47	10229	DP690-10	251.75	181.2			NaN	NaN	NaN	0	0	Median	52766000	52766000	0	15744	1153	14710	31133;31134	75300;75301;75302;75303	75300		4	9606
VLVLDTDYK	1	0	Unmodified	1064.5754	0.57537657	36	CON__P02754			yes	yes	0	0	0	8	0								1									16.283	16.283	2	0.039194	9509	DP690-8	90.657	48.548		+	NaN	NaN	NaN	0	0	Median	5026800	5026800	0	15745	36	14711	31135	75304	75304		1	
VLVLDTDYKK	2	0	Unmodified	1192.6703	0.67033959	36	CON__P02754			yes	yes	0	0	1	4.36	2.5	2	1	2	1	1	1	1	2									13.771	13.771	2;3	7.8016E-07	5499	DP690-1	138.08	85.067		+	0.65922	0.76739	NaN	1	0	Median	131810000	130220000	1588300	15746	36	14712	31136;31137;31138;31139;31140;31141;31142;31143;31144;31145;31146	75305;75306;75307;75308;75309;75310;75311;75312;75313;75314;75315;75316;75317;75318;75319;75320;75321;75322;75323;75324;75325;75326	75308		22	
VLVLGDSGVGK	1	0	Unmodified	1042.6023	0.60226003	1417	Q5HYI8	RABL3	Rab-like protein 3	yes	yes	0	0	0	15	0															1		15.217	15.217	2	0.003017	9087	DP690-15	92.051	34.502			0.82243	0.97063	NaN	1	0	Median	23819000	11787000	12032000	15747	1417	14713	31147	75327;75328	75328		2	9606
VLVLSQDYGK	1	0	Unmodified	1120.6128	0.61282471	1080	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	10	0										1							15.266	15.266	2	0.0028442	9948	DP690-10	96.665	55.217			0.84582	1.0397	NaN	1	0	Median	159250000	84279000	74974000	15748	1080	14714	31148	75329;75330;75331;75332	75331		4	9606
VLVMGATNRPQELDEAVLR	0	2	Oxidation (M)	2126.1154	0.11538747	2317	Q9UBP0	SPAST	Spastin	yes	yes	0	1	1	12	0												1					15.934	15.934	3	0.02993	10268	DP690-12	48.711	31.415			0.67126	0.7611	NaN	1	0	Median	24510000	15695000	8815100	15749	2317	14715	31149	75333;75334	75333	2770	2	9606
VLVQNAAGSQEK	1	0	Unmodified	1242.6568	0.65681479	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															10.598	10.598	2	0.00027062	2672	DP690-2	162.64	121.86			1.0763	1.0865	NaN	1	0	Median	16212000	7829900	8381900	15750	2482	14716	31150	75335;75336;75337;75338;75339	75335		5	9606
VLVTGATGLLGR	0	1	Unmodified	1155.6976	0.69755739	2275	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	6	0						1											17.324	17.324	2	8.6492E-05	10919	DP690-6	125.57	71.794			0.85334	0.95225	NaN	1	0	Median	28566000	14859000	13707000	15751	2275	14717	31151	75340;75341	75341		2	9606
VLVTQQFPCQNPLPVNSGQAQR	0	1	Unmodified	2480.2594	0.25942594	124	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	13	0													1				17.442	17.442	2	3.5472E-37	12049	DP690-13	242.41	223.51			0.63194	0.77825	NaN	1	0	Median	22934000	16253000	6680800	15752	124	14718	31152	75342;75343;75344;75345	75343		4	9606
VLVVHDGFEGLAK	1	0	Unmodified	1382.7558	0.75580056	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	3	0			1														15.759	15.759	3	0.00035235	9703	DP690-3	102.66	79.776			0.87916	0.92269	NaN	1	0	Median	48510000	26237000	22273000	15753	415	14719	31153	75346;75347;75348;75349;75350	75350		5	9606
VLVYELLLGK	1	0	Unmodified	1145.706	0.70599682	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	13	0													1				21.983	21.983	2	0.0085223	17794	DP690-13	85.731	85.731			0.86697	1.003	NaN	1	0	Median	51592000	27980000	23612000	15754	1906	14720	31154	75351;75352;75353;75354	75352		4	9606
VLWLADCDVSDSSCSSLAATLLANHSLR	0	1	Unmodified	3060.4645	0.46446928	482	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	5	0					1												21.943	21.943	3	0.00060312	16805	DP690-5	84.312	61.617			NaN	NaN	NaN	0	0	Median	7439400	0	7439400	15755	482	14721	31155	75355;75356	75355		2	9606
VLYAYGYYTGEPSK	1	0	Unmodified	1609.7664	0.76642482	116	O14880	MGST3	Microsomal glutathione S-transferase 3	yes	yes	0	0	0	16	0																1	16.84	16.84	2	0.00010471	10913	DP690-16	122.51	96.619			0.58772	0.68824	NaN	1	0	Median	7545300	4259700	3285600	15756	116	14722	31156	75357;75358	75357		2	9606
VLYDAEISQIHQSVTDTNVILSMDNSR	0	1	Oxidation (M)	3063.4819	0.48189348	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	6.43	4.75	1	1		1	1			1	1							1	19.842	19.842	3	3.8601E-06	11435	DP690-1	107.58	74.151		+	NaN	NaN	NaN	0	0	Median	62104000	62104000	0	15757	44	14723	31157;31158;31159;31160;31161;31162;31163	75359;75360;75361;75362;75363;75364;75365;75366;75367;75368;75369;75370;75371;75372;75373	75360	56	15	9606
VLYLLSQLQQSQMAEK	1	0	Oxidation (M)	1893.987	0.98699906	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	1	0	10	0										1							19.735	19.735	2	2.6533E-12	16345	DP690-10	208.08	208.08			0.7978	0.98532	NaN	1	0	Median	137590000	76278000	61312000	15758	311	14724	31164	75374;75375;75376;75377	75375	323	4	9606
VLYNLEVLSSK	1	0	Unmodified	1263.7075	0.70745338	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															18.471	18.471	2	0.0015348	11786	DP690-2	102.06	78.917			0.93097	0.94006	NaN	1	0	Median	16903000	8770200	8133100	15759	2418	14725	31165	75378;75379;75380;75381	75379		4	9606
VLYQVEGFVDKNNDLLYR	1	1	Unmodified	2184.1215	0.1215187	189	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	1	11	0											1						19.104	19.104	3	0.00068771	15223	DP690-11	121.32	94.05			NaN	NaN	NaN	0	0	Median	21432000	0	21432000	15760	189	14726	31166	75382	75382		1	9606
VLYSNMLGEENTYLWR	0	1	Oxidation (M)	2002.9459	0.94586252	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	0	11.7	1.7										1	1			1			19.32	19.32	2	0.0012702	15724	DP690-10	99.732	56.104			0.787	0.98469	NaN	1	0	Median	79641000	23860000	55780000	15761	1070	14727	31167;31168;31169	75383;75384;75385;75386	75383	1670	4	9606
VLYSNMLGEENTYLWR	0	1	Unmodified	1986.9509	0.9509479	1070	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	14	0														1			20.891	20.891	2	3.9544E-07	16754	DP690-14	215.04	166.53			NaN	NaN	NaN	0	0	Median	37362000	37362000	0	15762	1070	14727	31170	75387;75388	75388		2	9606
VMAAENIPENPLK	1	0	Oxidation (M)	1440.7283	0.72826518	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	1	0	3	0			1														15.415	15.415	2	6.2049E-05	9210	DP690-3	154.15	118.64			0.72866	0.77391	NaN	1	0	Median	30609000	17464000	13146000	15763	724	14728	31171	75389;75390;75391	75390	1069	3	9606
VMAEGTAVLR	0	1	Oxidation (M)	1061.5539	0.55392962	2459	Q9Y3A3	MOB4	MOB-like protein phocein	yes	yes	0	1	0	15	0															1		12.332	12.332	2	0.029253	5148	DP690-15	89.698	52.938			NaN	NaN	NaN	0	0	Median	7902100	0	7902100	15764	2459	14729	31172	75392	75392	2906	1	9606
VMAGSLLLDKR	1	1	Oxidation (M)	1217.6802	0.68019277	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	1	1	11	0											1						13.612	13.612	3	0.057105	7401	DP690-11	55.314	32.673			0.84017	1.0548	NaN	1	0	Median	36096000	12880000	23216000	15765	1531	14730	31173	75393	75393		0	9606
VMASMFYEVSTR	0	1	2 Oxidation (M)	1451.6425	0.64248664	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	2	0	2	0		1															15.322	15.322	2	0.00060894	8112	DP690-2	114.4	94.371			1.6603	1.738	NaN	1	0	Median	6565400	2817500	3747900	15766	602	14731	31174	75394;75395;75396;75397	75397	825;826	4	9606
VMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGR	0	1	4 Oxidation (M)	4258.1007	0.10068874	849	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	4	0	11	0											1						23.756	23.756	3	0.0045021	21325	DP690-11	42.015	42.015			NaN	NaN	NaN	0	0	Median	7951000	5490900	2460100	15767	849	14732	31175	75398	75398	1291;1292;1293;1294	1	9606
VMCIEHEIK	1	0	Oxidation (M)	1173.5522	0.55221507	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	1	0	3	0			1														10.695	10.695	3	0.050094	2974	DP690-3	70.056	40.39			NaN	NaN	NaN	0	0	Median	1484100	0	1484100	15768	724	14733	31176	75399	75399		1	9606
VMDIPYLNLEGPDLQPK	1	0	Oxidation (M)	1956.9867	0.98666471	325	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	1	0	11	0											1						20.564	20.564	2	0.0022934	17417	DP690-11	89.663	67.617			0.39374	0.48066	NaN	1	0	Median	25520000	18433000	7086800	15769	325	14734	31177	75400;75401	75400	338	2	9606
VMDRHHGTPMLLDGVK	1	1	2 Oxidation (M)	1836.8975	0.89747254	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	2	1	6.2	1.47					3			2									11.197	11.197	3;4	0.0027506	3608	DP690-5	114.06	86.126			NaN	NaN	NaN	0	0	Median	67677000	0	67677000	15770	2071	14735	31178;31179;31180;31181;31182	75402;75403;75404;75405;75406;75407;75408;75409	75405	2591;2592	8	9606
VMDRHHGTPMLLDGVK	1	1	Oxidation (M)	1820.9026	0.90255792	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	1	1	5.5	0.5					1	1											12.037	12.037	4	0.0068299	4437	DP690-5	91.355	65.225			NaN	NaN	NaN	0	0	Median	116430000	0	116430000	15771	2071	14735	31183;31184	75410;75411;75412;75413;75414	75412	2591;2592	5	9606
VMDRHHGTPMLLDGVK	1	1	Unmodified	1804.9076	0.9076433	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	1	5	0					2												12.771	12.771	3	0.00010818	5248	DP690-5	144.15	110.26			NaN	NaN	NaN	0	0	Median	29627000	0	29627000	15772	2071	14735	31185;31186	75415;75416;75417	75415		3	9606
VMEGTVAAQDEFYR	0	1	Oxidation (M)	1630.7297	0.72972174	719	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	1	0	9	4					1								1				15.159	15.159	2	3.7066E-05	9005	DP690-13	152.67	134.86			0.80359	0.91329	7.6565	2	0	Median	51183000	29164000	22019000	15773	719	14736	31187;31188	75418;75419;75420;75421;75422;75423;75424;75425;75426	75419	1051	9	9606
VMEGTVAAQDEFYR	0	1	Unmodified	1614.7348	0.73480712	719	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	5	0					1												16.317	16.317	2	0.055286	9702	DP690-5	88.155	44.197			NaN	NaN	NaN	0	0	Median	0	0	0	15774	719	14736	31189	75427	75427		1	9606
VMEMFQPSAVVLQCGSDSLSGDR	0	1	2 Oxidation (M)	2544.1295	0.12945891	1222	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	2	0	12	0												1					18.476	18.476	2	0.0016105	14086	DP690-12	89.982	36.814			1.2385	1.5084	NaN	1	0	Median	9810700	4942900	4867800	15775	1222	14737	31190	75428	75428	1867;1868	1	9606
VMEMYQPSAVVLQCGADSLSGDR	0	1	2 Oxidation (M)	2544.1295	0.12945891	1788	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	2	0	12	0												2					18.476	18.476	2	8.6081E-15	13776	DP690-12	166.3	140.01			1.2385	1.5084	NaN	1	0	Median	9810700	4942900	4867800	15776	1788	14738	31191;31192	75429;75430;75431	75429	2356;2357	3	9606
VMFSSFGQIEECR	0	1	Oxidation (M)	1604.6963	0.69631312	1795	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	1	0	12	0												1					17.671	17.671	2	0.0012114	12770	DP690-12	106.16	76.606			0.98799	1.1777	NaN	1	0	Median	32272000	16548000	15724000	15777	1795	14739	31193	75432	75432	2373	1	9606
VMGTFSTVTSTVK	1	0	Oxidation (M)	1372.6908	0.69081704	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	1	0	12	0												1					14.489	14.489	2	8.4293E-05	8262	DP690-12	126.03	98.978			0.82425	0.9742	NaN	1	0	Median	82114000	43240000	38875000	15778	417	14740	31194	75433;75434;75435;75436	75433	469	4	9606
VMGTFSTVTSTVK	1	0	Unmodified	1356.6959	0.69590241	417	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	12	0												1					15.807	15.807	2	7.9026E-05	10129	DP690-12	134.75	113.88			0.77545	0.92436	NaN	1	0	Median	52708000	28462000	24246000	15779	417	14740	31195	75437;75438;75439;75440;75441	75439		5	9606
VMIPQDEYPEINFVGLLIGPR	0	1	Oxidation (M)	2415.2508	0.25081832	1341	Q15637	SF1	Splicing factor 1	yes	yes	0	1	0	11	0											1						25.039	25.039	2	0.063229	22926	DP690-11	77.912	53.353			NaN	NaN	NaN	0	0	Median	0	0	0	15780	1341	14741	31196	75442	75442		1	9606
VMLGETNPADSKPGTIR	1	1	Oxidation (M)	1800.904	0.90399771	501;562	P15531;P22392;O60361	NME1;NME2;NME2P1	Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	no	no	0	1	1	12	4								2								2	12.917	12.917	2;3	4.5392E-08	5811	DP690-16	168.47	121.54			0.76056	0.88433	18.741	3	0	Median	290160000	167800000	122360000	15781	501;562	14742	31197;31198;31199;31200	75443;75444;75445;75446;75447;75448;75449;75450;75451;75452;75453;75454;75455;75456	75443	635	14	9606
VMLGETNPADSKPGTIR	1	1	Unmodified	1784.9091	0.90908309	501;562	P15531;P22392;O60361	NME1;NME2;NME2P1	Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	no	no	0	0	1	8	0								2									13.509	13.509	2;3	9.3647E-08	6411	DP690-8	155.56	131.36			0.7194	0.83647	NaN	1	0	Median	33404000	18949000	14454000	15782	501;562	14742	31201;31202	75457;75458;75459;75460;75461;75462	75459		6	9606
VMLLQQGLNDR	0	1	Oxidation (M)	1301.6762	0.67617003	1966	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	1	0	3	0			1														15.327	15.327	2	0.015154	9156	DP690-3	80.165	59.879			0.82992	0.94119	NaN	1	0	Median	10760000	5597300	5162700	15783	1966	14743	31203	75463	75463	2513	1	9606
VMLPGQCQYLGLPVADYFK	1	0	Oxidation (M)	2214.0853	0.085332894	177	O43414	ERI3	ERI1 exoribonuclease 3	yes	yes	0	1	0	9.67	3.77							2								1		22.041	22.041	2	0.00083584	17364	DP690-15	100.19	80.916			0.66289	0.76094	NaN	1	0	Median	3197300	1878200	1319100	15784	177	14744	31204;31205;31206	75464;75465;75466;75467;75468;75469;75470	75467	193	7	9606
VMNMEESNNGSLSAEFK	1	0	2 Oxidation (M)	1917.8084	0.80844234	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	2	0	3	0			2														14.234	14.234	2	4.1525E-12	7601	DP690-3	176.25	143.25			NaN	NaN	NaN	0	0	Median	3998500	3998500	0	15785	708	14745	31207;31208	75471;75472;75473	75471	1039;1040	3	9606
VMNMEESTNGSLAAEFR	0	1	2 Oxidation (M)	1916.8244	0.82442676	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	2	0	3	0			2														15.475	15.475	2	5.3297E-07	9298	DP690-3	196.11	168.68			NaN	NaN	NaN	0	0	Median	0	0	0	15786	724	14746	31209;31210	75474;75475	75475	1070;1071	2	9606
VMPFSTACNTPLSNFESHQNYK	1	0	Oxidation (M)	2587.1472	0.14715788	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	3	0			1														17.148	17.148	3	0.033656	11526	DP690-3	44.029	36.002			1.3482	1.4317	NaN	1	0	Median	11282000	5500000	5781600	15787	721	14747	31211	75476	75476	1062	1	9606
VMPSSFFLLLR	0	1	Oxidation (M)	1324.7213	0.7213293	270	O75663	TIPRL	TIP41-like protein	yes	yes	0	1	0	7	0							1										22.394	22.394	2	0.018005	17385	DP690-7	76.827	60.195			0.85069	0.98705	NaN	1	0	Median	11671000	6132800	5538600	15788	270	14748	31212	75477;75478	75478	286	2	9606
VMQQQQQTTQQQLPQK	1	0	Oxidation (M)	1956.9687	0.96872323	1334	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	11	0											2						10.625	10.625	2	5.749E-35	2989	DP690-11	266.93	141.7			NaN	NaN	NaN	0	0	Median	0	0	0	15789	1334	14749	31213;31214	75479;75480	75479	2087	2	9606
VMQQQQQTTQQQLPQK	1	0	Unmodified	1940.9738	0.97380861	1334	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	11	0											4						11.322	11.322	2	4.7347E-58	4002	DP690-11	350.4	273.11			NaN	NaN	NaN	0	0	Median	0	0	0	15790	1334	14749	31215;31216;31217;31218	75481;75482;75483;75484	75482		4	9606
VMQTDESNKETANLQER	1	1	Oxidation (M)	2007.9167	0.91674724	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	1	1	9	0									1								10.59	10.59	3	1.4698E-06	2903	DP690-9	133.87	116.08			0.80626	0.93512	NaN	1	0	Median	9479300	4892900	4586400	15791	1696	14750	31219	75485;75486	75486	2293	2	9606
VMSQEIQEQLHK	1	0	Oxidation (M)	1484.7293	0.72932781	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	5.5	3.5		1							1								11.913	11.913	3	0.00014606	4428	DP690-9	116.84	90.055			1.1298	1.252	0.12381	2	0	Median	40551000	19022000	21530000	15792	1264	14751	31220;31221	75487;75488;75489;75490;75491;75492;75493;75494	75493	1916	8	9606
VMSQEIQEQLHK	1	0	Unmodified	1468.7344	0.73441319	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								13.496	13.496	3	0.022212	6512	DP690-9	78.548	38.968			NaN	NaN	NaN	0	0	Median	7288600	7288600	0	15793	1264	14751	31222	75495	75495		1	9606
VMSQNFTNCHTK	1	0	Unmodified	1465.6442	0.64421797	1196	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	12	0												1					10.577	10.577	3	1.028E-05	2939	DP690-12	187.31	161.97			0.99174	1.1075	NaN	1	0	Median	196930000	97437000	99488000	15794	1196	14752	31223	75496	75496		1	9606
VMTIAPGLFGTPLLTSLPEK	1	0	Oxidation (M)	2100.1541	0.15406439	1953	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	1	0	11	4							1								1		22.438	22.438	2	1.5604E-11	17405	DP690-7	165.78	165.78			0.60813	0.68704	7.8713	2	0	Median	16879000	9950300	6928500	15795	1953	14753	31224;31225	75497;75498;75499;75500;75501;75502;75503;75504;75505;75506;75507;75508;75509	75509	2493	13	9606
VMTIPYQPMPASSPVICAGGQDR	0	1	2 Oxidation (M)	2506.1655	0.16545048	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	2	0	10	4						1								1			16.656	16.656	2	8.8884E-15	11114	DP690-14	165.89	137.11			0.61616	0.72421	13.204	2	0	Median	73146000	48807000	24340000	15796	1325	14754	31226;31227	75510;75511;75512;75513;75514;75515;75516;75517;75518	75510	2055;2056	9	9606
VMTIPYQPMPASSPVICAGGQDR	0	1	Oxidation (M)	2490.1705	0.17053586	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	1	0	14	0														1			17.754	17.754	2	7.0683E-15	12580	DP690-14	169.98	127.3			0.63703	0.76311	NaN	1	0	Median	97839000	57551000	40288000	15797	1325	14754	31228	75519;75520;75521;75522;75523;75524	75519	2055;2056	6	9606
VMTIPYQPMPASSPVICAGGQDR	0	1	Unmodified	2474.1756	0.17562124	1325	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	14	0														1			18.942	18.942	2	2.7377E-15	14200	DP690-14	173.19	148.97			0.71111	0.84949	NaN	1	0	Median	104810000	60641000	44166000	15798	1325	14754	31229	75525;75526;75527;75528;75529;75530	75527		6	9606
VMVLDFVTPTPLGTR	0	1	Oxidation (M)	1660.8858	0.88582845	1374	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	1	0	4	0				1													20.718	20.718	2	2.1415E-05	15545	DP690-4	129.88	107.32			0.87063	1.0132	NaN	1	0	Median	9234700	4483700	4751000	15799	1374	14755	31230	75531;75532;75533	75531	2119	3	9606
VMVQINTSGEESK	1	0	Oxidation (M)	1436.6817	0.68170891	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	1	0	9.67	3.77							2								1		13.048	13.048	2	1.5386E-10	5489	DP690-7	227.36	175.41			0.82421	0.92735	6.5565	3	0	Plateau	120600000	64590000	56011000	15800	296	14756	31231;31232;31233	75534;75535;75536;75537;75538;75539;75540;75541;75542;75543;75544	75538	312	11	9606
VMVQINTSGEESK	1	0	Unmodified	1420.6868	0.68679429	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	7	0							1										13.794	13.794	2	8.7194E-11	6866	DP690-7	233.09	199.17			0.8591	0.92403	NaN	1	0	Median	46664000	26109000	20554000	15801	296	14756	31234	75545;75546;75547;75548	75547		4	9606
VMVQPINLIFR	0	1	Oxidation (M)	1344.7588	0.75877744	977	P62304	SNRPE	Small nuclear ribonucleoprotein E	yes	yes	0	1	0	16	0																1	20.549	20.549	2	0.00013124	15223	DP690-16	160.11	124.66			0.76446	0.85856	NaN	1	0	Median	57715000	32209000	25507000	15802	977	14757	31235	75549;75550;75551;75552	75550	1493	4	9606
VMVTNVTSLLK	1	0	Oxidation (M)	1219.6846	0.68460945	2482	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	yes	no	0	1	0	2	0		1															17.853	17.853	2	0.077124	11223	DP690-2	63.283	28.059			1.0425	1.046	NaN	1	0	Median	5434900	2453400	2981400	15803	2482	14758	31236	75553	75553		1	9606
VMYGFCSVK	1	0	Oxidation (M)	1105.4936	0.49363755	1365	Q16643	DBN1	Drebrin	yes	yes	0	1	0	11	0											1						14.542	14.542	2	0.033155	8607	DP690-11	79.474	41.171			0.84799	0.92856	NaN	1	0	Median	313990000	168390000	145600000	15804	1365	14759	31237	75554;75555;75556	75555	2112	3	9606
VMYGFCSVK	1	0	Unmodified	1089.4987	0.49872293	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	0	11	0											1						15.612	15.612	2	0.059782	10257	DP690-11	64.42	24.419			0.83742	0.90005	NaN	1	0	Median	399890000	207500000	192400000	15805	1365	14759	31238	75557;75558;75559;75560	75557		4	9606
VMYTPMAPGNYLISVK	1	0	2 Oxidation (M)	1814.8947	0.89467858	250	O75369	FLNB	Filamin-B	yes	yes	0	2	0	10	0										1							18.111	18.111	2	0.0096499	14059	DP690-10	95.401	43.01			NaN	NaN	NaN	0	0	Median	47695000	47695000	0	15806	250	14760	31239	75561	75561	251;252	1	9606
VNCVVPGIIK	1	0	Unmodified	1097.6267	0.62670064	1195	Q13268	DHRS2	Dehydrogenase/reductase SDR family member 2, mitochondrial	yes	yes	0	0	0	11	4							1								1		16.043	16.043	2	0.00061036	10053	DP690-15	115.49	77.683			0.8022	0.86252	25.66	2	0	Median	339830000	197280000	142550000	15807	1195	14761	31240;31241	75562;75563;75564;75565;75566;75567	75563		6	9606
VNDFLAEIFK	1	0	Unmodified	1194.6285	0.62847478	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							22.672	22.672	2	0.011963	20278	DP690-10	80.916	41.663			0.63769	0.77304	NaN	1	0	Median	11230000	6600300	4629400	15808	1240	14762	31242	75568;75569;75570	75568		3	9606
VNDFLAEIFKK	2	0	Unmodified	1322.7234	0.72343779	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	1	10	0										1							20.106	20.106	3	0.002152	16877	DP690-10	83.226	66.693			0.80563	1.0204	NaN	1	0	Median	66243000	33268000	32974000	15809	1240	14763	31243	75571;75572;75573;75574	75574		4	9606
VNDPLIFIR	0	1	Unmodified	1085.6233	0.62332982	1819	Q96AH0	NABP1	SOSS complex subunit B2	yes	yes	0	0	0	15	0															2		19.572	19.572	2	0.0029889	14535	DP690-15	107.9	70.346			0.95421	1.108	2.5185	2	0	Median	24101000	12358000	11743000	15810	1819	14764	31244;31245	75575;75576;75577;75578;75579	75578		5	9606
VNEAAPEKPQDDSGTAGGISSTSASVNR	1	1	Unmodified	2744.2849	0.28490823	1437	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	1	2	0		1															12.559	12.559	3	1.0836E-05	4833	DP690-2	110.03	92.124			0.6847	0.67402	NaN	1	0	Median	3230900	1876300	1354700	15811	1437	14765	31246	75580;75581;75582;75583	75582		4	9606
VNEISVEVDSDPR	0	1	Unmodified	1457.6998	0.69980182	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															15.042	15.042	2	7.6291E-05	7810	DP690-2	158.56	123.27			1.1587	1.2112	NaN	1	0	Median	10157000	4896700	5260500	15812	602	14766	31247	75584;75585;75586;75587	75587		4	9606
VNEMIVTGQYGR	0	1	Oxidation (M)	1381.666	0.66599927	1538	Q7Z2W9	MRPL21	39S ribosomal protein L21, mitochondrial	yes	yes	0	1	0	16	0																1	13.829	13.829	2	0.050891	7082	DP690-16	67.385	47.726			0.79293	0.9222	NaN	1	0	Median	16939000	9850200	7089000	15813	1538	14767	31248	75588	75588		1	9606
VNESSLNWPQLENIGNFIK	1	0	Unmodified	2201.1117	0.1116823	1330	Q15417	CNN3	Calponin-3	yes	yes	0	0	0	14	0														1			22.863	22.863	2	3.8927E-13	19141	DP690-14	181.76	108.4			0.72522	0.88003	NaN	1	0	Median	34423000	18554000	15868000	15814	1330	14768	31249	75589;75590;75591;75592;75593;75594	75592		6	9606
VNFAMNVGK	1	0	Oxidation (M)	994.4906	0.49060109	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	1	0	4	0				1													12.65	12.65	2	0.0088134	5281	DP690-4	98.523	70.416			0.95504	0.99737	NaN	1	0	Median	142960000	70995000	71967000	15815	488	14769	31250	75595;75596	75595	615	2	9606
VNFAMNVGK	1	0	Unmodified	978.49569	0.49568646	488	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	4	0				1													15.023	15.023	2	0.0046191	8542	DP690-4	101.33	101.33			1.0987	1.1769	NaN	1	0	Median	44871000	21867000	23003000	15816	488	14769	31251	75597	75597		1	9606
VNFLPEIITLSK	1	0	Unmodified	1372.7966	0.79660274	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	7	3.56		1							1	1							22.119	22.119	2	0.0010258	17271	DP690-9	105.13	88.557			0.83957	1.0222	1.1585	3	0	Plateau	31610000	17030000	14579000	15817	1264	14770	31252;31253;31254	75598;75599;75600;75601;75602;75603;75604;75605;75606;75607;75608	75604		11	9606
VNFPENGFLSPDKLSLLEK	2	0	Unmodified	2146.131	0.13102076	636	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	1	13	0													1				20.661	20.661	3	0.043201	16388	DP690-13	44.587	44.587			0.72908	0.82602	NaN	1	0	Median	31344000	16940000	14404000	15818	636	14771	31255	75609	75609		1	9606
VNFTVDQIR	0	1	Unmodified	1090.5771	0.57710791	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	9.67	4.99			1								1				1		16.113	16.113	2	0.00035635	10072	DP690-3	157.33	94.671			0.93157	1.0184	7.9007	3	0	Median	547860000	277280000	270580000	15819	483	14772	31256;31257;31258	75610;75611;75612;75613;75614;75615;75616;75617;75618;75619	75618		10	9606
VNFTVDQIR	0	1	Acetyl (Protein N-term)	1132.5877	0.58767259	483	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	3	0			1														18.557	18.557	2	0.0011696	13362	DP690-3	132.76	88.409			1.3171	1.5201	NaN	1	0	Median	19266000	8655300	10610000	15820	483	14772	31259	75620;75621	75620		2	9606
VNGRPLEMIEPR	0	2	Oxidation (M)	1425.7398	0.73983291	969	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	1	1	16	0																1	12.761	12.761	3	0.012902	5559	DP690-16	65.842	37.036			0.71844	0.75905	NaN	1	0	Median	270140000	152140000	118000000	15821	969	14773	31260	75622;75623;75624	75623	1486	3	9606
VNGSTTAICATGLR	0	1	Unmodified	1419.714	0.71401209	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	0	12	0												1					14.085	14.085	2	0.0066507	7698	DP690-12	76.522	58.188			0.66273	0.78984	NaN	1	0	Median	32573000	16826000	15747000	15822	2521	14774	31261	75625;75626	75625		2	9606
VNIIPLIAK	1	0	Unmodified	979.643	0.64300263	1351	Q16181;Q6ZU15	SEPT7;SEPT14	Septin-7;Septin-14	yes	no	0	0	0	11.7	1.89									1				2				18.678	18.678	2	0.01041	13366	DP690-13	89.142	0			0.80344	0.88656	11.507	3	0	Median	419620000	238250000	181370000	15823	1351	14775	31262;31263;31264	75627;75628;75629;75630;75631	75627		5	9606
VNIIPVIAK	1	0	Unmodified	965.62735	0.62735256	2296	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	13	0													1				17.481	17.481	2	0.01041	12171	DP690-13	89.142	19.144			0.75085	0.86145	NaN	1	0	Median	93594000	52948000	40646000	15824	2296	14776	31265	75632;75633	75633		2	9606
VNILEVASGAVLR	0	1	Unmodified	1339.7823	0.78234966	1157	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	11	0											3						21.536	21.536	2	5.9012E-05	18671	DP690-11	141.71	88.622			0.95503	1.1653	NaN	1	0	Median	17736000	7002900	10733000	15825	1157	14777	31266;31267;31268	75634;75635;75636;75637	75634		4	9606
VNILSDMHLR	0	1	Unmodified	1196.6336	0.63357693	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	11.5	0.5											1	1					17.048	17.048	3	4.0452E-05	11830	DP690-12	140.83	115.96			2.4479	2.8822	5.3844	2	0	Median	192150000	54772000	137380000	15826	829	14778	31269;31270	75638;75639;75640;75641;75642;75643;75644;75645	75642		8	9606
VNILSDMHLR	0	1	Oxidation (M)	1212.6285	0.62849155	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	1	0	12	0												2					15.427	15.427	3	0.036254	7331	DP690-12	56.359	32.61			1.0059	1.1634	17.783	2	0	Median	244160000	122400000	121770000	15827	829	14778	31271;31272	75646;75647;75648;75649;75650	75647	1261	5	9606
VNIVFNYDMPEDSDTYLHR	0	1	Oxidation (M)	2343.0478	0.047761414	63	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	1	0	13	0													1				18.17	18.17	3	3.8189E-10	12983	DP690-13	154.39	136.8			0.84373	0.99546	NaN	1	0	Median	124680000	68792000	55884000	15828	63	14779	31273	75651;75652;75653;75654;75655;75656;75657	75653	72	7	9606
VNIVPVIAK	1	0	Unmodified	951.6117	0.6117025	1310	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	14	0														1			16.243	16.243	2	0.0020169	10530	DP690-14	114.78	55.866			0.76667	0.90986	NaN	1	0	Median	142970000	76803000	66169000	15829	1310	14780	31274	75658;75659;75660;75661;75662	75659		5	9606
VNLAIWDTAGQER	0	1	Unmodified	1471.7419	0.7419414	2383	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	15	0															1		18.505	18.505	2	0.015329	13355	DP690-15	72.652	35.968			0.60007	0.69836	NaN	1	0	Median	4339200	1949900	2389300	15830	2383	14781	31275	75663	75663		1	9606
VNLFPGLSPSALK	1	0	Unmodified	1341.7656	0.76563696	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										1							20.062	20.062	2	0.0761	16929	DP690-10	81.525	28.031			NaN	NaN	NaN	0	0	Median	38236000	0	38236000	15831	2065	14782	31276	75664	75664		1	9606
VNLQMVYDSPLCR	0	1	Oxidation (M)	1609.7592	0.75924773	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	0	10.3	4.64				1								1			1		17.643	17.643	2	7.3853E-09	12574	DP690-12	211.86	180.97			0.92446	1.0047	17.045	3	0	Median	471670000	243800000	227880000	15832	2434	14783	31277;31278;31279	75665;75666;75667;75668;75669;75670;75671;75672;75673;75674;75675;75676;75677	75666	2876	13	9606
VNLQMVYDSPLCR	0	1	Unmodified	1593.7643	0.76433311	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	10.4	3.2				1								4					18.847	18.847	2	7.098199999999999E-66	14293	DP690-12	302.25	239.78			NaN	NaN	NaN	0	0	Median	3717500	3717500	0	15833	2434	14783	31280;31281;31282;31283;31284	75678;75679;75680;75681;75682	75679		5	9606
VNNASLIGLGYTQTLRPGVK	1	1	Unmodified	2100.1691	0.1691376	2433	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	1	14.7	0.471														1	2		17.278	17.278	2;3	3.5752999999999997E-38	11797	DP690-15	233.28	174.77			0.87267	0.95626	21.483	2	0	Median	474910000	272790000	202120000	15834	2433	14784	31285;31286;31287	75683;75684;75685;75686;75687;75688;75689;75690;75691;75692;75693;75694	75693		12	9606
VNNSSLIGVGYTQTLRPGVK	1	1	Unmodified	2102.1484	0.14840216	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	1	14.3	0.471														2	1		16.165	16.165	2;3	1.6938E-30	10444	DP690-14	243.92	243.92			0.77383	0.78661	6.1746	3	0	Plateau	1536499999.9999998	830540000	705930000	15835	744	14785	31288;31289;31290	75695;75696;75697;75698;75699;75700;75701;75702;75703;75704	75700		10	9606
VNNSTGTSEDPSLQR	0	1	Unmodified	1603.7438	0.7437919	2346	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	8	4				1								1					11.326	11.326	2	2.338E-14	3833	DP690-12	216.91	190.87			0.75174	0.89959	NaN	1	0	Median	26718000	15176000	11542000	15836	2346	14786	31291;31292	75705;75706;75707;75708;75709;75710	75705		6	9606
VNPALAELNLR	0	1	Unmodified	1208.6877	0.68772099	482	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	5	0					1												17.6	17.6	2	0.0016044	11387	DP690-5	101.46	81.47			2.7785	2.9017	NaN	1	0	Median	43816000	12669000	31147000	15837	482	14787	31293	75711;75712;75713	75711		3	9606
VNPHSLPDPEVNEQSSSK	1	0	Unmodified	1962.9283	0.9282982	1943	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	11	0											1						12.798	12.798	3	0.021871	6121	DP690-11	52.318	27.469			0.54438	0.65924	NaN	1	0	Median	43478000	24620000	18858000	15838	1943	14788	31294	75714;75715;75716	75716		3	9606
VNQCVIGTAQANR	0	1	Unmodified	1429.7096	0.70959542	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	12	0												1					12.151	12.151	2	0.0048103	5054	DP690-12	118.28	74.766			NaN	NaN	NaN	0	0	Median	6063000	6063000	0	15839	2024	14789	31295	75717	75717		1	9606
VNQIGSVTESLQACK	1	0	Unmodified	1632.8141	0.81412007	395	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	5	0					1												15.835	15.835	2	1.3267E-09	9123	DP690-5	207.88	0			1.3533	1.3483	NaN	1	0	Median	75102000	28982000	46120000	15840	395	14790	31296	75718;75719;75720	75719		3	9606
VNQPASFAIR	0	1	Unmodified	1101.5931	0.59309232	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							14.442	14.442	2	9.3274E-05	8716	DP690-10	149.72	92.44			0.58448	0.66542	NaN	1	0	Median	398140000	239870000	158270000	15841	250	14791	31297	75721;75722;75723;75724	75722		4	9606
VNQPASFAVQLNGAR	0	1	Unmodified	1570.8216	0.82158871	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7.67	4.03		1								1	1						16.37	16.37	2	1.2924E-05	9379	DP690-2	129.89	108.14			1.0761	1.1263	18.747	3	0	Median	186390000	104820000	81573000	15842	1270	14792	31298;31299;31300	75725;75726;75727;75728;75729;75730;75731;75732;75733;75734;75735	75731		11	9606
VNQPASFAVSLNGAK	1	0	Unmodified	1501.7889	0.7888916	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8.8	3.54		1							1	1	1	1					16.322	16.322	2	7.9997E-07	11351	DP690-10	186.87	160.83			0.83239	0.98388	14.404	5	0	Median	1087100000	569750000	517360000	15843	549	14793	31301;31302;31303;31304;31305	75736;75737;75738;75739;75740;75741;75742;75743;75744;75745;75746;75747;75748;75749;75750;75751;75752;75753;75754;75755;75756;75757;75758;75759	75738		24	9606
VNSASSSNPPAEVDPDTILK	1	0	Unmodified	2040.0011	0.0011287971	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	13	0													1				16.998	16.998	2	5.2471E-10	11438	DP690-13	157.33	110.54			0.50648	0.58911	NaN	1	0	Median	25162000	16126000	9035600	15844	2045	14794	31306	75760;75761;75762;75763	75760		4	9606
VNSININQGSITFAGGPGR	0	1	Unmodified	1900.9755	0.97552317	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	11	0											1						17.825	17.825	2	0.0052969	13451	DP690-11	124.81	94.261			NaN	NaN	NaN	0	0	Median	0	0	0	15845	65	14795	31307	75764	75764		1	9606
VNSKFDTIYQILLK	2	0	Unmodified	1680.9451	0.94505789	1269	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	1	11.5	0.5											1	1					20.417	20.417	3	0.00056423	17176	DP690-11	95.195	78.346			1.0615	1.2808	NaN	1	0	Median	25578000	15758000	9820300	15846	1269	14796	31308;31309	75765;75766;75767	75765		3	9606
VNSLAPGPISGTEGLR	0	1	Unmodified	1566.8366	0.83657007	2219	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	0	0	15	0															1		16.25	16.25	2	0.027023	10443	DP690-15	100.73	54.321			NaN	NaN	NaN	0	0	Median	0	0	0	15847	2219	14797	31310	75768	75768		1	9606
VNSLAPGPISGTEGLRR	0	2	Unmodified	1722.9377	0.9376811	2219	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	0	1	15	0															1		14.322	14.322	3	0.018814	7874	DP690-15	78.508	38.847			NaN	NaN	NaN	0	0	Median	12430000	12430000	0	15848	2219	14798	31311	75769;75770	75769		2	9606
VNTHGIFTISTASMVEK	1	0	Oxidation (M)	1849.9244	0.9243988	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	1	0	3	0			1														15.683	15.683	3	0.0012086	9499	DP690-3	79.514	46.589			1.1801	1.2469	NaN	1	0	Median	37368000	18591000	18778000	15849	1778	14799	31312	75771;75772;75773;75774;75775	75771	2342	5	9606
VNTLIRPDGEK	1	1	Unmodified	1240.6776	0.67755023	988	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	15.3	0.471															2	1	11.226	11.226	2;3	0.00019763	3819	DP690-15	178.84	140.27			0.76885	0.85082	10.628	3	0	Median	133470000	75253000	58222000	15850	988	14800	31313;31314;31315	75776;75777;75778;75779;75780;75781;75782;75783;75784;75785	75782		10	9606
VNVEAPDVNLEGLGGK	1	0	Unmodified	1609.8312	0.83115034	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10.2	0.829									1	1	2						18.044	18.044	2	3.3287E-17	13924	DP690-10	214	186.95			0.72127	0.86279	7.1401	2	0	Median	316470000	201480000	114990000	15851	1145	14801	31316;31317;31318;31319	75786;75787;75788;75789;75790;75791;75792;75793;75794	75786		9	9606
VNVHVLGVLLGQK	1	0	Unmodified	1374.8347	0.83471958	1498	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	10	0										1							18.692	18.692	3	0.030011	14834	DP690-10	73.881	50.053			NaN	NaN	NaN	0	0	Median	13138000	13138000	0	15852	1498	14802	31320	75795	75795		1	9606
VPADTEVVCAPPTAYIDFAR	0	1	Unmodified	2191.062	0.061954915	919	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	7	0							2										20.075	20.075	2	5.772E-14	14697	DP690-7	183.96	131.89			NaN	NaN	NaN	0	0	Median	11191000	5107500	6083600	15853	919	14803	31321;31322	75796;75797;75798;75799;75800	75800		5	9606
VPAFEGDDGFCVFESNAIAYYVSNEELR	0	1	Unmodified	3197.4288	0.42879528	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	13	0													1				24.848	24.848	3	0.00023265	21152	DP690-13	66.36	56.563			1.7596	2.0164	NaN	1	0	Median	1676200	742810	933400	15854	598	14804	31323	75801;75802	75801		2	9606
VPAGNWVLIEGVDQPIVK	1	0	Unmodified	1933.0673	0.067298289	1314	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	11	0											1						20.787	20.787	2	2.7377E-06	17682	DP690-11	134.88	122.12			0.79007	0.96685	NaN	1	0	Median	22897000	13036000	9860800	15855	1314	14805	31324	75803;75804;75805	75803		3	9606
VPAINVNDSVTK	1	0	Unmodified	1255.6772	0.67721588	571	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	5	0					1												14.225	14.225	2	4.6965E-08	7073	DP690-5	208.15	165.96			0.89649	0.89093	NaN	1	0	Median	189270000	92651000	96622000	15856	571	14806	31325	75806;75807;75808;75809	75808		4	9606
VPAPSIEDICHVLSTVCK	1	0	Unmodified	2024.0071	0.0070825729	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	14	0														1			20.918	20.918	3	6.9786E-07	16745	DP690-14	137.32	118.5			0.8151	0.98081	NaN	1	0	Median	25876000	14178000	11698000	15857	712	14807	31326	75810;75811;75812;75813	75810		4	9606
VPAPVTMDSFFFGCELSGHTR	0	1	Oxidation (M)	2370.0773	0.077287403	267	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	1	0	15.5	0.5															1	1	19.126	19.126	3	1.0171E-06	13682	DP690-16	133.94	114.55			0.84592	0.98893	2.5359	2	0	Median	8454900	3862800	4592100	15858	267	14808	31327;31328	75814;75815;75816;75817;75818	75816	270	5	9606
VPDLSGMLQVLK	1	0	Oxidation (M)	1314.7217	0.72172323	1626	Q8IYM9	TRIM22	E3 ubiquitin-protein ligase TRIM22	yes	yes	0	1	0	12	0												1					18.411	18.411	2	0.00026705	13743	DP690-12	123.11	61.42			0.7019	0.83786	NaN	1	0	Median	36646000	20053000	16592000	15859	1626	14809	31329	75819	75819	2268	1	9606
VPDLSGMLQVLK	1	0	Unmodified	1298.7268	0.72680861	1626	Q8IYM9	TRIM22	E3 ubiquitin-protein ligase TRIM22	yes	yes	0	0	0	12	0												1					22.321	22.321	2	0.0015154	18674	DP690-12	99.973	52.15			0.71055	0.86247	NaN	1	0	Median	10485000	6182900	4302300	15860	1626	14809	31330	75820;75821	75820		2	9606
VPDVQDGVR	0	1	Unmodified	983.50361	0.50360861	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.5	0.5									1	1							12.261	12.261	2	0.0014989	4797	DP690-9	120.46	81.651			0.73327	0.83658	2.4137	2	0	Median	456810000	246130000	210670000	15861	1319	14810	31331;31332	75822;75823;75824;75825;75826;75827;75828;75829	75829		8	9606
VPEANSSWMDTVIR	0	1	Unmodified	1603.7664	0.7664416	457	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	12	0												1					18.921	18.921	2	0.0011064	14485	DP690-12	99.343	99.343			0.032942	0.038262	NaN	1	0	Median	112390000	109100000	3288500	15862	457	14811	31333	75830;75831;75832	75832		3	9606
VPEEEKDTNVQVLMVLGAGR	1	1	Oxidation (M)	2199.1205	0.12053243	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	1	1	4	0				1													17.588	17.588	3	8.421E-07	11826	DP690-4	134.08	104.94			2.7292	3.1127	NaN	1	0	Median	18737000	4110700	14627000	15863	111	14812	31334	75833;75834	75834	124	2	9606
VPEGGEGIGANDVEVK	1	0	Unmodified	1568.7682	0.76821573	1102	Q03001	DST	Dystonin	yes	yes	0	0	0	9	0									1								14.295	14.295	2	7.6672E-06	7605	DP690-9	127.71	102.37			0.65167	0.81824	NaN	1	0	Median	5842600	3772900	2069600	15864	1102	14813	31335	75835;75836	75836		2	9606
VPEGGEGISATEVDSR	0	1	Unmodified	1601.7533	0.75329395	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	10	0										1							13.591	13.591	2	0.002062	7921	DP690-10	95.183	57.856			0.70211	0.77541	NaN	1	0	Median	591160000	343880000	247290000	15865	2411	14814	31336	75837	75837		1	9606
VPEILQLSDALR	0	1	Unmodified	1352.7664	0.76636524	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														20.766	20.766	2	3.47E-05	16106	DP690-3	185.96	126.71			0.68225	0.75967	NaN	1	0	Median	39410000	22369000	17041000	15866	797	14815	31337	75838;75839;75840;75841	75840		4	9606
VPELNVQNGVLK	1	0	Unmodified	1308.7402	0.74015049	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	10	0										1							16.468	16.468	2	0.00047659	11652	DP690-10	112.71	90.131			0.58882	0.72659	NaN	1	0	Median	105670000	53132000	52541000	15867	263	14816	31338	75842;75843	75842		2	9606
VPEPNENVGDAVQTK	1	0	Unmodified	1595.7791	0.77911477	1541	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	10	0										1							13.396	13.396	2	8.3709E-26	7144	DP690-10	222.81	165.67			NaN	NaN	NaN	0	0	Median	15984000	15984000	0	15868	1541	14817	31339	75844;75845	75844		2	9606
VPETVSAATQTIK	1	0	Unmodified	1343.7296	0.72964538	1167	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	9.5	0.5									1	1							14.227	14.227	2	6.6883E-07	8385	DP690-10	164.65	127.96			0.53761	0.67812	NaN	1	0	Median	86166000	4094700	82071000	15869	1167	14818	31340;31341	75846;75847;75848	75847		3	9606
VPEVPTAPATDAAPK	1	0	Unmodified	1462.7668	0.76675917	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	11.5	0.5											1	1					14.198	14.198	2	1.1027E-05	7768	DP690-12	178.53	116.97			0.58032	0.68889	4.2139	2	0	Median	152050000	105320000	46728000	15870	2344	14819	31342;31343	75849;75850;75851;75852;75853;75854	75852		6	9606
VPFCPMVGSEVYSTEIK	1	0	Oxidation (M)	1957.9165	0.91653623	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	1	0	13	0													1				18.134	18.134	2	4.3824E-07	13046	DP690-13	150.14	130.56			0.74276	0.8641	NaN	1	0	Median	29604000	16866000	12738000	15871	2431	14820	31344	75855;75856;75857;75858;75859	75856	2870	5	9606
VPFLPGDSDLDQLTR	0	1	Unmodified	1671.8468	0.84680041	822	P50613	CDK7	Cyclin-dependent kinase 7	yes	yes	0	0	0	14	0														1			20.507	20.507	2	2.38E-05	16202	DP690-14	145.14	121.07			0.70447	0.85004	NaN	1	0	Median	62360000	35734000	26627000	15872	822	14821	31345	75860;75861	75860		2	9606
VPFLSSLEGHIYLK	1	0	Unmodified	1601.8817	0.88172935	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.5	0.5										1	1						19.945	19.945	3	0.0014032	16584	DP690-10	124.48	100.4			0.89397	1.1061	NaN	1	0	Median	78042000	45161000	32881000	15873	2190	14822	31346;31347	75862;75863;75864;75865;75866;75867	75862		6	9606
VPFLVAETPR	0	1	Unmodified	1127.6339	0.63389451	1183	Q13131	PRKAA1	5'-AMP-activated protein kinase catalytic subunit alpha-1	yes	yes	0	0	0	12	0												1					17.275	17.275	2	0.00057987	12237	DP690-12	116.37	75.343			0.67374	0.79995	NaN	1	0	Median	54706000	33669000	21037000	15874	1183	14823	31348	75868;75869	75868		2	9606
VPFLVLECPNLK	1	0	Unmodified	1427.7847	0.78465784	2202	Q9NRP0	OSTC	Oligosaccharyltransferase complex subunit OSTC	yes	yes	0	0	0	16	0																1	20.292	20.292	2	0.00013967	14946	DP690-16	174.02	134.4			0.74405	0.87167	NaN	1	0	Median	11446000	6505000	4940700	15875	2202	14824	31349	75870;75871;75872;75873	75870		4	9606
VPFNVDFDKLPR	1	1	Unmodified	1445.7667	0.76669959	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	1	9	0									1								18.025	18.025	3	0.0017972	12392	DP690-9	87.001	45.424			0.77323	0.89681	NaN	1	0	Median	5806000	3121400	2684500	15876	1453	14825	31350	75874;75875	75874		2	9606
VPGGEQEDAESR	0	1	Unmodified	1272.5582	0.55822296	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	2	0		1															10.408	10.408	2	0.037694	2432	DP690-2	64.73	47.892			1.1226	1.1584	NaN	1	0	Median	4030000	1835400	2194600	15877	1453	14826	31351	75876	75876		1	9606
VPGLPTPIENMILR	0	1	Unmodified	1548.8698	0.86978446	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							21.827	21.827	2	0.0069593	19194	DP690-10	105.13	53.372			NaN	NaN	NaN	0	0	Median	0	0	0	15878	1492	14827	31352	75877	75877		1	9606
VPGLYVIDSIVR	0	1	Unmodified	1329.7656	0.76563696	2413	Q9UPN6;O95104	SCAF8;SCAF4	Protein SCAF8;Splicing factor, arginine/serine-rich 15	yes	no	0	0	0	10	0										1							21.167	21.167	2	0.0026683	18312	DP690-10	91.636	53.333			0.61979	0.77631	NaN	1	0	Median	44207000	27757000	16450000	15879	2413	14828	31353	75878;75879;75880;75881	75880		4	9606
VPGVTAIELDEDTGTFR	0	1	Unmodified	1818.9	0.89995819	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	12	0												1					19.124	19.124	2	0.00011319	14721	DP690-12	120.84	88.563			1.1008	1.3293	NaN	1	0	Median	16425000	7580300	8845000	15880	829	14829	31354	75882;75883;75884	75882		3	9606
VPHNAAVQVYDYR	0	1	Unmodified	1530.7579	0.75792582	1293	Q14764	MVP	Major vault protein	yes	yes	0	0	0	3	0			1														13.433	13.433	3	0.0015038	6535	DP690-3	73.219	24.56			0.74654	0.81464	NaN	1	0	Median	57841000	31766000	26075000	15881	1293	14830	31355	75885;75886	75885		2	9606
VPINDVLAEDKILEGTETTK	2	0	Unmodified	2184.1525	0.15254406	1050	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	1	14	0														1			18.411	18.411	3	1.024E-05	13540	DP690-14	124.94	99.776			0.8652	0.96785	NaN	1	0	Median	90946000	46598000	44348000	15882	1050	14831	31356	75887;75888;75889;75890	75887		4	9606
VPIVINPNAYDNLAIYK	1	0	Unmodified	1916.0407	0.040749188	2131	Q9H792	PEAK1	Pseudopodium-enriched atypical kinase 1	yes	yes	0	0	0	10	0										1							20.643	20.643	2	0.0049574	17596	DP690-10	134.77	86.926			NaN	NaN	NaN	0	0	Median	0	0	0	15883	2131	14832	31357	75891	75891		1	9606
VPIYFSTGLTEK	1	0	Unmodified	1353.718	0.71801807	1442	Q5TA45	CPSF3L	Integrator complex subunit 11	yes	yes	0	0	0	4	0				1													18.063	18.063	2	0.048927	12474	DP690-4	86.898	45.45			NaN	NaN	NaN	0	0	Median	2316000	0	2316000	15884	1442	14833	31358	75892	75892		1	9606
VPLALFALNR	0	1	Unmodified	1112.6706	0.67061436	478	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	4	0				1													20.246	20.246	2	5.1677E-05	15034	DP690-4	186.67	159.98			0.71562	0.81463	NaN	1	0	Median	23967000	13926000	10041000	15885	478	14834	31359	75893;75894;75895;75896	75896		4	9606
VPLAPITDPQQLQLSPLK	1	0	Unmodified	1957.1248	0.12481317	635	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	0	6	0						1											20.351	20.351	2	1.6628E-05	14464	DP690-6	186.58	146.64			NaN	NaN	NaN	0	0	Median	2752900	2752900	0	15886	635	14835	31360	75897	75897		1	9606
VPLDEALQR	0	1	Unmodified	1039.5662	0.56620887	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								14.724	14.724	2	0.0029889	8226	DP690-9	107.9	60.238			0.68576	0.77739	NaN	1	0	Median	96946000	55381000	41566000	15887	1319	14836	31361	75898;75899;75900;75901	75900		4	9606
VPLDVACAR	0	1	Unmodified	999.51715	0.51715019	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.33	0.471									2	1							13.565	13.565	2	0.00053038	7404	DP690-10	149.4	103.45			0.65489	0.74946	15.032	2	0	Median	511050000	268700000	242350000	15888	1319	14837	31362;31363;31364	75902;75903;75904;75905;75906;75907;75908;75909;75910	75903		9	9606
VPLEVQEADEAK	1	0	Unmodified	1326.6667	0.66671078	597	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	11	0											1						13.91	13.91	2	0.0083992	7817	DP690-11	76.927	46.13			0.83704	1.0149	NaN	1	0	Median	41671000	22621000	19049000	15889	597	14838	31365	75911	75911		1	9606
VPLHQVPYAVK	1	0	Unmodified	1249.7183	0.71829284	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	11	0											1						12.947	12.947	3	0.0007046	6365	DP690-11	97.472	97.472			0.72646	0.81922	NaN	1	0	Median	214450000	123910000	90540000	15890	2127	14839	31366	75912;75913	75912		2	9606
VPLILNLIR	0	1	Unmodified	1049.6961	0.69610083	1343	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	0	0	0	10.5	0.5										1	1						21.547	21.547	2	0.0005566	18824	DP690-10	148.21	148.21			0.74051	0.92012	8.6744	2	0	Median	36047000	20835000	15212000	15891	1343	14840	31367;31368	75914;75915;75916;75917;75918;75919	75917		6	9606
VPLILVGNK	1	0	Unmodified	951.6117	0.6117025	2476	Q9Y3L5	RAP2C	Ras-related protein Rap-2c	yes	yes	0	0	0	11	0											1						16.264	16.264	2	0.038234	11196	DP690-11	90.777	0			NaN	NaN	NaN	0	0	Median	22114000	22114000	0	15892	2476	14841	31369	75920	75920		1	9606
VPLMLSSPLR	0	1	Oxidation (M)	1127.6373	0.63726532	2562				yes	yes	0	1	0	4	0				1													17.281	17.281	2	0.015593	11543	DP690-4	84.498	8.398	+		0.79034	0.92054	NaN	1	0	Median	11074000	5585300	5488500	15893	2562	14842	31370	75921	75921	2981	1	9606
VPLPSLSPTMQAGTIAR	0	1	Unmodified	1737.9447	0.94474031	457	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	12	0												1					18.473	18.473	2	0.0018941	13817	DP690-12	86.262	86.262			0.72321	0.86776	NaN	1	0	Median	20869000	13784000	7084200	15894	457	14843	31371	75922;75923	75922		2	9606
VPLQDLMVR	0	1	Oxidation (M)	1085.5903	0.59031513	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	1	0	5	0					1												15.673	15.673	2	0.039296	8848	DP690-5	75.738	53.778			0.72175	0.74619	NaN	1	0	Median	128980000	75252000	53730000	15895	2385	14844	31372	75924	75924	2816	1	9606
VPLQDLMVR	0	1	Unmodified	1069.5954	0.59540051	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	5	0					1												17.815	17.815	2	0.00064621	11613	DP690-5	143.89	143.89			0.76312	0.79449	NaN	1	0	Median	61131000	36287000	24844000	15896	2385	14844	31373	75925;75926;75927;75928	75927		4	9606
VPLVAEKPLKEPK	3	0	Unmodified	1446.881	0.88100107	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	2	3	0			1														11.79	11.79	3	6.4945E-05	4372	DP690-3	122.46	83.065			0.69905	0.7252	NaN	1	0	Median	99253000	60285000	38969000	15897	720	14845	31374	75929;75930;75931;75932	75932		4	9606
VPLVAPEDLR	0	1	Unmodified	1107.6288	0.62880913	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	4	0				1													16.506	16.506	2	0.0030856	10475	DP690-4	131.22	94.841			NaN	NaN	NaN	0	0	Median	40822000	0	40822000	15898	111	14846	31375	75933;75934	75933		2	9606
VPMLVPVPVSEPVPEPEPEPEPEPVKEEK	2	0	Oxidation (M)	3218.6308	0.63084913	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	1	1	13	0													1				18.17	18.17	3	8.0601E-18	12988	DP690-13	165.88	165.88			0.2987	0.32942	NaN	1	0	Median	209800000	159560000	50242000	15899	491	14847	31376	75935;75936;75937;75938;75939	75936	620	5	9606
VPMLVPVPVSEPVPEPEPEPEPEPVKEEK	2	0	Unmodified	3202.6359	0.63593451	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	1	13	0													1				18.96	18.96	3	3.233E-12	14114	DP690-13	151.23	139.3			0.36581	0.40989	NaN	1	0	Median	68389000	48502000	19887000	15900	491	14847	31377	75940;75941;75942;75943	75943		4	9606
VPNGSNPYTLK	1	0	Unmodified	1188.6139	0.61388734	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												1					13.162	13.162	2	0.0021587	6313	DP690-12	96.665	53.801			0.76891	0.91641	NaN	1	0	Median	50436000	19648000	30787000	15901	1750	14848	31378	75944;75945	75944		2	9606
VPNSVLWLLR	0	1	Unmodified	1195.7077	0.70772815	149	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	11	0											2						21.486	21.486	2	7.4169E-05	18515	DP690-11	199.02	176.24			0.41852	0.50105	NaN	1	0	Median	28940000	18672000	10268000	15902	149	14849	31379;31380	75946;75947;75948;75949;75950	75946		5	9606
VPPAINQFTQALDR	0	1	Unmodified	1568.8311	0.83109076	984	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	15	0															1		19.425	19.425	2	0.0060323	14536	DP690-15	78.513	50.648			0.67935	0.78501	NaN	1	0	Median	6708300	3656700	3051600	15903	984	14850	31381	75951;75952	75951		2	9606
VPPGYHPLDVEK	1	0	Unmodified	1349.698	0.69795133	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9	0									1								12.86	12.86	3	0.08007	5701	DP690-9	52.79	52.79			0.65725	0.84183	NaN	1	0	Median	15264000	9551600	5712200	15904	1319	14851	31382	75953	75953		1	9606
VPPGYHPLDVEKEWGK	2	0	Unmodified	1849.9363	0.93628412	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	11	0											1						15.061	15.061	4	0.0078128	9535	DP690-11	60.968	37.372			0.63571	0.70913	NaN	1	0	Median	238960000	148990000	89973000	15905	1319	14852	31383	75954;75955	75955		2	9606
VPPNHVGKPLLK	2	0	Unmodified	1297.787	0.7870411	1680	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	1	12	0												1					10.353	10.353	3	0.0010854	2580	DP690-12	91.549	91.549			0.63918	0.73892	NaN	1	0	Median	42059000	22816000	19243000	15906	1680	14853	31384	75956;75957	75956		2	9606
VPPPPPIAR	0	1	Unmodified	942.56509	0.56508666	410	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	14	0														2			12.492	12.492	2	0.015266	5117	DP690-14	84.244	52.308			0.5543	0.6263	1.3254	2	0	Median	645320000	410690000	234630000	15907	410	14854	31385;31386	75958;75959;75960	75958		3	9606
VPPPPQSVSMAEQLR	0	1	Oxidation (M)	1650.8399	0.83994089	613	P29353	SHC1	SHC-transforming protein 1	yes	yes	0	1	0	4	0				1													14.617	14.617	2	0.010432	8028	DP690-4	75.088	31.791			0.63799	0.73445	NaN	1	0	Median	19094000	11475000	7618600	15908	613	14855	31387	75961;75962	75962	851	2	9606
VPPPWLIAMQR	0	1	Unmodified	1306.722	0.72199801	1210	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	11	0											1						20.258	20.258	2	0.046127	16938	DP690-11	63.419	40.046			0.64892	0.7841	NaN	1	0	Median	22272000	15304000	6967200	15909	1210	14856	31388	75963;75964	75963		2	9606
VPQAQPTKPALK	2	0	Unmodified	1276.7503	0.75032125	340	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	1	12	0												1					10.398	10.398	3	0.0029897	2682	DP690-12	107.34	70.816			NaN	NaN	NaN	0	0	Median	0	0	0	15910	340	14857	31389	75965	75965		1	9606
VPQFSFSR	0	1	Unmodified	966.49232	0.49231565	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															16.098	16.098	2	0.044315	9001	DP690-2	161.68	102.9			1.2698	1.3219	NaN	1	0	Median	37303000	15794000	21508000	15911	602	14858	31390	75966	75966		0	9606
VPQIEVETHK	1	0	Unmodified	1178.6295	0.62953741	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								11.926	11.926	3	0.00021132	4374	DP690-9	115.23	99.311			0.86889	0.97386	4.5627	2	0	Median	11829000	6306800	5521800	15912	1264	14859	31391;31392	75967;75968;75969;75970;75971;75972;75973;75974	75972		8	9606
VPQLPITNFNR	0	1	Unmodified	1297.7143	0.71427009	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	9	4.64		1							1	1					1		17.801	17.801	2	0.00011163	13671	DP690-10	143.03	122.89			0.73584	0.86074	9.4092	4	0	Median	510380000	284280000	226100000	15913	1270	14860	31393;31394;31395;31396	75975;75976;75977;75978;75979;75980;75981	75975		7	9606
VPQTFTVDCSQAGR	0	1	Unmodified	1564.7304	0.73039044	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	7	3.56		1							1	1							14.346	14.346	2	1.2274E-05	8577	DP690-10	205.56	174.74			0.82736	1.0338	6.4819	3	0	Median	350090000	186770000	163320000	15914	1270	14861	31397;31398;31399	75982;75983;75984;75985;75986;75987;75988;75989;75990;75991	75986		10	9606
VPQVSTPTLVEVSR	0	1	Unmodified	1510.8355	0.83550744	37	CON__P02769			no	no	0	0	0	2.33	1.25	1	1		1													16.792	16.792	2	7.2385E-05	9855	DP690-2	155.47	89.283		+	NaN	NaN	NaN	0	0	Median	11697000	11697000	0	15915	37	14862	31400;31401;31402	75992;75993;75994;75995;75996	75994		5	
VPRGESLMEWAENVMQIHADRK	1	2	Oxidation (M)	2611.2635	0.26352504	2393	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	1	2	7	0							1										26.538	26.538	3	0.036893	22009	DP690-7	41.962	29.251			0.73918	0.91927	NaN	1	0	Median	12648000	5973800	6674100	15916	2393	14863	31403	75997	75997	2824	1	9606
VPSAPGQESPIPDPK	1	0	Unmodified	1517.7726	0.77257283	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								14.103	14.103	2	1.3512E-05	7268	DP690-9	130.69	104.64			0.5212	0.66674	NaN	1	0	Median	12377000	7791400	4585200	15917	1048	14864	31404	75998;75999;76000;76001;76002	76000		5	9606
VPSELISLFNK	1	0	Unmodified	1245.6969	0.69688869	2301	Q9P291	ARMCX1	Armadillo repeat-containing X-linked protein 1	yes	yes	0	0	0	13	0													1				20.526	20.526	2	7.7006E-05	16113	DP690-13	128.28	100.2			0.97797	1.1255	NaN	1	0	Median	13620000	6061200	7558600	15918	2301	14865	31405	76003;76004;76005	76004		3	9606
VPSENVLGEVGSGFK	1	0	Unmodified	1517.7726	0.77257283	800	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1													18.256	18.256	2	0.0007421	12677	DP690-4	102.73	82.301			0.85491	0.9267	NaN	1	0	Median	26161000	12869000	13292000	15919	800	14866	31406	76006;76007	76007		2	9606
VPSGGYSSINNVQDPQKPEPR	1	1	Unmodified	2268.1135	0.11347321	2373	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	1	7	4			1								1						13.084	13.084	3	0.025631	6644	DP690-11	78.418	47.185			NaN	NaN	NaN	0	0	Median	23831000	23831000	0	15920	2373	14867	31407;31408	76008;76009	76008		2	9606
VPSLTTVPQTQGQTTAQK	1	0	Unmodified	1883.9953	0.99525556	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11.5	0.5											1	1					14.17	14.17	2	6.9964E-31	8151	DP690-11	298.91	255.41			0.67149	0.80064	5.6713	2	0	Median	141860000	87102000	54762000	15921	2024	14868	31409;31410	76010;76011;76012;76013;76014;76015;76016	76010		7	9606
VPSPKVVLASQPDLECGFSRDLFIQWCQDPK	2	1	Unmodified	3615.7854	0.78540948	2304	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	2	13	0													1				16.52	16.52	5	0.065106	10880	DP690-13	29.675	14.897			1.1438	1.2629	NaN	1	0	Median	37717000	18671000	19046000	15922	2304	14869	31411	76017	76017		1	9606
VPSPPDEHQEAENAVSSGNR	0	1	Unmodified	2118.9566	0.95663822	2041	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	13	1												1		1			12.78	12.78	3	6.3563E-05	5912	DP690-12	109.28	97.621			0.72869	0.86548	NaN	1	0	Median	51234000	34793000	16441000	15923	2041	14870	31412;31413	76018;76019;76020;76021	76018		4	9606
VPSVPETELTDQAWLPAGVR	0	1	Unmodified	2164.1164	0.11643333	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	11	0											1						20.657	20.657	2	6.963E-18	17504	DP690-11	208.82	185.42			0.74693	0.89263	NaN	1	0	Median	48740000	27781000	20959000	15924	2127	14871	31414	76022;76023;76024;76025	76025		4	9606
VPSVSSSALVSSLHLLK	1	0	Unmodified	1722.988	0.98798534	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	3	0			1														19.36	19.36	3	0.00030389	14366	DP690-3	93.181	82.137			23.414	25.18	NaN	1	0	Median	17184000	417670	16766000	15925	2515	14872	31415	76026;76027	76026		2	9606
VPTANVSVVDLTCR	0	1	Unmodified	1529.7872	0.78717704	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	10	4						1								1			17.142	17.142	2	2.343E-19	10703	DP690-6	289.71	267.37			1.0947	1.218	27.951	2	0	Median	307430000	149480000	157950000	15926	371	14873	31416;31417	76028;76029;76030;76031;76032;76033;76034;76035	76035		8	9606
VPTAPAATSKPGLRPR	1	2	Unmodified	1617.9315	0.93147351	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	2	13	0													1				10.477	10.477	4	0.00083064	2799	DP690-13	98.942	87.998			0.63546	0.70539	NaN	1	0	Median	111170000	67045000	44125000	15927	491	14874	31418	76036;76037	76037		2	9606
VPTLAVPAISLPDDVR	0	1	Unmodified	1661.9352	0.93522148	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	10	0										1							20.754	20.754	2	0.022101	17795	DP690-10	113.07	62.277			NaN	NaN	NaN	0	0	Median	40905000	40905000	0	15928	591	14875	31419	76038	76038		1	9606
VPTLAVPAISLPDDVRR	0	2	Unmodified	1818.0363	0.036332512	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	1	10	0										1							18.948	18.948	3	0.018211	15311	DP690-10	101.75	66.096			NaN	NaN	NaN	0	0	Median	94933000	94933000	0	15929	591	14876	31420	76039	76039		1	9606
VPTYKDYVDLFR	1	1	Unmodified	1514.7769	0.77692993	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.5	0.5									1	1							19.253	19.253	3	3.7977E-05	15653	DP690-10	132.03	110.17			0.82718	0.98605	13.661	2	0	Median	154340000	80997000	73344000	15930	1046	14877	31421;31422	76040;76041;76042;76043;76044;76045;76046;76047;76048	76043		9	9606
VPVATYTNSSQPFR	0	1	Unmodified	1565.7838	0.78380622	785	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	13	0													1				15.042	15.042	2	0.0056056	8806	DP690-13	87.667	31.236			0.81876	1.0087	NaN	1	0	Median	22357000	11715000	10642000	15931	785	14878	31423	76049;76050;76051;76052	76049		4	9606
VPVDVAYQR	0	1	Unmodified	1045.5556	0.55564418	1319	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	yes	no	0	0	0	10	0.816									1	1	1						13.339	13.339	2	0.00011143	7038	DP690-10	172.03	126.95			0.74458	0.80742	6.8015	3	0	Plateau	1128500000	635740000	492750000	15932	1319	14879	31424;31425;31426	76053;76054;76055;76056;76057;76058;76059;76060;76061;76062	76053		10	9606
VPVDVAYR	0	1	Unmodified	917.49707	0.49706667	1319	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	yes	no	0	0	0	9	0									1								13.458	13.458	2	0.05228	6449	DP690-9	152.63	115.6			0.72336	0.78546	NaN	1	0	Median	204330000	115570000	88762000	15933	1319	14880	31427	76063	76063		0	9606
VPVFRPMDLMVEASPR	0	2	2 Oxidation (M)	1874.9383	0.93827473	1015	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	2	1	5	0					1												16.364	16.364	3	0.0036428	9804	DP690-5	69.431	53.441			1.3599	1.3431	NaN	1	0	Median	60528000	23333000	37195000	15934	1015	14881	31428	76064;76065	76065	1538;1539	2	9606
VPVFRPMDLMVEASPR	0	2	Oxidation (M)	1858.9434	0.9433601	1015	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	1	1	5	0					1												17.615	17.615	3	0.00019298	11371	DP690-5	105.58	105.58			1.3625	1.3456	NaN	1	0	Median	31576000	13777000	17799000	15935	1015	14881	31429	76066;76067	76066	1538;1539	2	9606
VPVFRPMDLMVEASPR	0	2	Unmodified	1842.9484	0.94844548	1015	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	0	1	5	0					1												19.573	19.573	3	0.0065885	13804	DP690-5	67.299	37.387			1.3186	1.3022	NaN	1	0	Median	16848000	7678300	9169300	15936	1015	14881	31430	76068;76069	76069		2	9606
VPVHDVTDASK	1	0	Unmodified	1166.5932	0.5931519	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	7.33	3.77		1								2							10.414	10.414	2;3	2.6986E-05	2851	DP690-10	123.62	98.492			0.81407	0.84379	8.7671	3	0	Median	2460100000	1372700000	1087400000	15937	549	14882	31431;31432;31433	76070;76071;76072;76073;76074;76075;76076;76077	76073		8	9606
VPVKDVVDPGK	2	0	Unmodified	1151.655	0.65502388	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	1	7.5	3.2		1							2	1							11.554	11.554	3	0.054199	3655	DP690-2	50.354	33.821			0.80955	0.91424	16.738	2	0	Median	33446000	20024000	13421000	15938	1270	14883	31434;31435;31436;31437	76078;76079;76080;76081;76082	76080		5	9606
VPVKDVVDPSK	2	0	Unmodified	1181.6656	0.66558856	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	9.5	0.5									1	1							11.474	11.474	3	0.00082385	4296	DP690-10	87.641	87.641			1.2819	1.5635	65.228	2	0	Median	79840000	24633000	55206000	15939	250	14884	31438;31439	76083;76084;76085;76086;76087;76088	76083		6	9606
VPVLGSLLNLPGIR	0	1	Unmodified	1446.8922	0.89223446	2471	Q9Y3E0	GOLT1B	Vesicle transport protein GOT1B	yes	yes	0	0	0	9	0									1								22.894	22.894	2	8.4134E-05	18255	DP690-9	123.63	109.39			0.82138	0.99754	NaN	1	0	Median	1934300	1145200	789080	15940	2471	14885	31440	76089;76090;76091	76090		3	9606
VPVPEDKYTAQVDAEEKEDVK	3	0	Unmodified	2388.1697	0.16965069	282	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	2	15.5	0.5															1	1	14.118	14.118	4	7.3459E-05	7451	DP690-16	121.51	104.49			0.6287	0.72773	1.9931	2	0	Median	138730000	84401000	54333000	15941	282	14886	31441;31442	76092;76093;76094;76095;76096;76097	76097		6	9606
VPYPGMVNR	0	1	Unmodified	1031.5222	0.52223557	412;477	P07947;P12931	YES1;SRC	Tyrosine-protein kinase Yes;Proto-oncogene tyrosine-protein kinase Src	no	no	0	0	0	12	0												1					13.837	13.837	2	0.019015	7361	DP690-12	80.462	59.837			0.55222	0.6565	NaN	1	0	Median	64591000	41693000	22897000	15942	412;477	14887	31443	76098;76099	76098		2	9606
VQAHAAAALINFTEDCPK	1	0	Unmodified	1954.9571	0.95709591	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			2														16.746	16.746	2;3	6.7254E-05	10985	DP690-3	113.88	90.522			1.0102	1.0461	NaN	1	0	Median	81523000	40200000	41322000	15943	82	14888	31444;31445	76100;76101;76102;76103;76104	76103		5	9606
VQALEEANNDLENK	1	0	Unmodified	1585.7584	0.75837933	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	6	4.32	1	1	1	1	1	1		1	1							1	14.499	14.499	2	6.040500000000001E-25	7839	DP690-4	212.09	156.37		+	NaN	NaN	NaN	0	0	Median	142600000	142600000	0	15944	667	14889	31446;31447;31448;31449;31450;31451;31452;31453;31454	76105;76106;76107;76108;76109;76110;76111;76112;76113;76114;76115;76116;76117;76118;76119;76120;76121;76122;76123;76124	76116		20	9606
VQALEEANNDLENKIQDWYDK	2	0	Unmodified	2534.1925	0.1925114	667	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	9	0									1								19.721	19.721	3	0.0018489	14528	DP690-9	102.98	82.739		+	NaN	NaN	NaN	0	0	Median	5440900	5440900	0	15945	667	14890	31455	76125	76125		1	9606
VQALTTDISLIFAALK	1	0	Unmodified	1702.9869	0.9869227	1501	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	10	0										1							26.025	26.025	2	0.00026157	24272	DP690-10	113.77	105.86			0.59904	0.69576	NaN	1	0	Median	1797600	1204200	593420	15946	1501	14891	31456	76126;76127	76126		2	9606
VQANLGAPDINIEGLDAK	1	0	Unmodified	1836.9581	0.95814177	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							19.012	19.012	2	7.7983E-13	13586	DP690-9	179.5	179.5			0.64762	0.83017	NaN	1	0	Median	15071000	8604400	6466900	15947	1145	14892	31457;31458	76128;76129;76130;76131;76132;76133	76132		6	9606
VQAQAEQGQQELK	1	0	Unmodified	1455.7318	0.73177065	2024	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	11	1.41									1			2					10.642	10.642	2	4.3112E-05	3120	DP690-12	126.39	62.961			0.7531	0.91868	1.7836	2	0	Median	61521000	27619000	33903000	15948	2024	14893	31459;31460;31461	76134;76135;76136;76137	76134		4	9606
VQAQVIQETIVPK	1	0	Unmodified	1451.8348	0.83477916	1334	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	11	0											1						16.144	16.144	2	0.00069067	11063	DP690-11	106.62	84.626			0.825	1.0017	NaN	1	0	Median	39807000	20640000	19167000	15949	1334	14894	31462	76138;76139	76138		2	9606
VQDDEVGDGTTSVTVLAAELLR	0	1	Unmodified	2287.1543	0.15433498	1044	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	8	4				1								1					24.018	24.018	2	8.7504E-10	20611	DP690-12	152.94	126.83			1.1986	1.4069	54.162	2	0	Median	3605100	1830500	1774600	15950	1044	14895	31463;31464	76140;76141;76142;76143;76144;76145;76146;76147;76148	76143		9	9606
VQDGKPVILLFR	1	1	Unmodified	1383.8238	0.82382054	2199	Q9NRG9	AAAS	Aladin	yes	yes	0	0	1	12	0												1					17.436	17.436	3	0.00011764	12360	DP690-12	118.77	118.77			0.83526	0.96382	NaN	1	0	Median	121890000	65845000	56049000	15951	2199	14896	31465	76149;76150	76150		2	9606
VQDILSGIEKPQVSNIQAR	1	1	Unmodified	2094.1433	0.14331678	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	1	10.3	0.471										2	1						17.076	17.076	3	0.00069627	12556	DP690-10	134.08	102.6			0.62491	0.75587	33.199	2	0	Median	261070000	139960000	121110000	15952	1399	14897	31466;31467;31468	76151;76152;76153	76152		2	9606
VQDLLEFLHEK	1	0	Unmodified	1369.7242	0.72416608	283	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	6	4		1								1							19.2	19.2	3	0.0049876	12661	DP690-2	61.235	32.446			1.034	1.0371	NaN	1	0	Median	26878000	24194000	2684400	15953	283	14898	31469;31470	76154;76155;76156;76157;76158;76159	76156		6	9606
VQDLSAGGQGSLTDSGPER	0	1	Unmodified	1872.8813	0.88134801	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	9	3.08				1					1		1	1					14.043	14.043	2	3.676E-137	8016	DP690-11	342.38	239.17			0.62508	0.72725	NaN	1	0	Median	114580000	4378400	110200000	15954	701	14899	31471;31472;31473;31474	76160;76161;76162;76163;76164;76165;76166;76167;76168;76169;76170	76162		11	9606
VQEFDSGLLHWR	0	1	Unmodified	1485.7365	0.7364621	103	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	10.2	0.4										4	1						18.269	18.269	3	0.0009404	14175	DP690-10	103.91	66.753			0.72545	0.88633	NaN	1	0	Median	24916000	8838200	16078000	15955	103	14900	31475;31476;31477;31478;31479	76171;76172;76173;76174;76175	76174		5	9606
VQEFEHVNGR	0	1	Unmodified	1213.584	0.5839842	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	10	0										1							10.79	10.79	3	0.044611	3373	DP690-10	70.399	49.366			NaN	NaN	NaN	0	0	Median	0	0	0	15956	1297	14901	31480	76176	76176		1	9606
VQEFNNCLNR	0	1	Unmodified	1292.5932	0.59316868	2131	Q9H792	PEAK1	Pseudopodium-enriched atypical kinase 1	yes	yes	0	0	0	10	0										1							13.284	13.284	2	0.0083135	6959	DP690-10	113.26	61.001			NaN	NaN	NaN	0	0	Median	25094000	0	25094000	15957	2131	14902	31481	76177;76178	76177		2	9606
VQELQNLLK	1	0	Unmodified	1083.6288	0.62880913	1570	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	10	0										2							17.017	17.017	2	0.0025425	12461	DP690-10	134.48	35.955			NaN	NaN	NaN	0	0	Median	42832000	42832000	0	15958	1570	14903	31482;31483	76179;76180;76181	76179		3	9606
VQENCIDLVGR	0	1	Unmodified	1301.6398	0.63978452	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	10	0										2							15.106	15.106	2	0.0054884	9704	DP690-10	117.7	50.736			NaN	NaN	NaN	0	0	Median	0	0	0	15959	263	14904	31484;31485	76182;76183	76183		2	9606
VQENSAYICSR	0	1	Unmodified	1325.6034	0.60339901	2477	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	11	0											2						12.292	12.292	2	0.00012456	5363	DP690-11	135.55	114.6			1.0564	1.2697	NaN	1	0	Median	76319000	40176000	36143000	15960	2477	14905	31486;31487	76184;76185;76186;76187;76188	76186		5	9606
VQEQVHTLLSQDQAQAAR	0	1	Unmodified	2021.029	0.029015303	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	12	0												2					13.74	13.74	2;3	9.000399999999999E-32	7234	DP690-12	285.81	285.81			0.87529	1.0289	6.3794	2	0	Median	181830000	98607000	83227000	15961	1131	14906	31488;31489	76189;76190;76191;76192;76193;76194	76194		6	9606
VQFVPFHSDLGYR	0	1	Unmodified	1563.7834	0.78341229	1647	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	0	13	0													1				17.253	17.253	3	0.00021093	11870	DP690-13	125.36	97.306			0.66265	0.80431	NaN	1	0	Median	53868000	33321000	20547000	15962	1647	14907	31490	76195;76196;76197;76198	76196		4	9606
VQGDYFETLLYK	1	0	Unmodified	1474.7344	0.73439641	1456	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	11	0											1						20.445	20.445	2	0.01012	17172	DP690-11	104.52	55.921			NaN	NaN	NaN	0	0	Median	16306000	0	16306000	15963	1456	14908	31491	76199	76199		1	9606
VQGGALEDSQLVAGVAFK	1	0	Unmodified	1787.9418	0.94176342	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	4	0				1													19.143	19.143	2	5.499E-09	13721	DP690-4	144.51	119.31			1.5241	1.6521	NaN	1	0	Median	8886500	3763700	5122800	15964	1959	14909	31492	76200;76201;76202	76200		3	9606
VQGLEQAVDNFEGKK	2	0	Unmodified	1660.842	0.84204938	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	1	4	0				1													16.836	16.836	3	0.026669	10944	DP690-4	51.727	37.644			1.0358	1.0698	NaN	1	0	Median	12672000	5219600	7452300	15965	342	14910	31493	76203;76204	76203		2	9606
VQGSDSDEEVVVATTR	0	1	Unmodified	1690.801	0.80097243	597	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	8.33	3.77			1								2						14.34	14.34	2	2.1174E-47	8424	DP690-11	256.95	186.55			1.0813	1.2197	NaN	1	0	Median	56618000	23932000	32686000	15966	597	14911	31494;31495;31496	76205;76206;76207;76208;76209;76210;76211;76212;76213	76207		9	9606
VQHQDALQISDVVMASLLR	0	1	Unmodified	2122.1205	0.12047285	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	11	0											1						22.37	22.37	3	0.029886	19830	DP690-11	70.114	39.375			NaN	NaN	NaN	0	0	Median	10098000	0	10098000	15967	1300	14912	31497	76214	76214		1	9606
VQHTVCMDCSSYSTYCYR	0	1	Unmodified	2315.9068	0.90679296	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	0	12	0												2					14.449	14.449	3	0.00078125	8264	DP690-12	107.65	90.077			NaN	NaN	NaN	0	0	Median	20298000	0	20298000	15968	2521	14913	31498;31499	76215;76216;76217	76215		3	9606
VQHTVCMDCSSYSTYCYR	0	1	Oxidation (M)	2331.9017	0.90170758	2521	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	1	0	12	0												1					13.256	13.256	3	0.032194	6598	DP690-12	59.281	59.281			0.9506	1.1277	NaN	1	0	Median	48602000	23851000	24751000	15969	2521	14913	31500	76218	76218	2960	0	9606
VQIAANEETQER	0	1	Unmodified	1386.6739	0.67392142	788	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	3	0			1														11.694	11.694	2	9.8273E-05	4253	DP690-3	132.32	93.543			0.69721	0.78085	NaN	1	0	Median	7346400	3758800	3587500	15970	788	14914	31501	76219;76220	76220		2	9606
VQIDTFKENENGEYTEHLHSASCQIK	2	0	Unmodified	3076.4196	0.41962757	1160	Q12800	TFCP2	Alpha-globin transcription factor CP2	yes	yes	0	0	1	12	0												1					14.3	14.3	5	0.00076858	8061	DP690-12	62.442	62.442			0.67553	0.75524	NaN	1	0	Median	179200000	104620000	74583000	15971	1160	14915	31502	76221	76221		1	9606
VQIFEYNENTR	0	1	Unmodified	1411.6732	0.67319314	1840	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	14	0														1			16.129	16.129	2	0.00015354	10331	DP690-14	160.82	138.26			1.0325	1.2462	NaN	1	0	Median	61415000	26985000	34430000	15972	1840	14916	31503	76222;76223	76223		2	9606
VQISPDSGGLPER	0	1	Unmodified	1353.6888	0.6888432	1798	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	7	4			1								1						14.375	14.375	2	4.0721E-08	8476	DP690-11	199.19	160.88			0.83416	0.93808	27.318	2	0	Median	263860000	129140000	134720000	15973	1798	14917	31504;31505	76224;76225;76226;76227;76228;76229;76230;76231	76226		8	9606
VQIVSIKDYFLEFEGDPHCLR	1	1	Unmodified	2564.2733	0.27334467	1273	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	1	14	0														1			20.709	20.709	4	0.00055126	16523	DP690-14	79.695	67.263			0.59714	0.74764	NaN	1	0	Median	14423000	7675400	6747500	15974	1273	14918	31506	76232;76233	76232		2	9606
VQIYHNPTANSFR	0	1	Unmodified	1545.7688	0.76882486	821	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	13	0													2				13.439	13.439	2;3	0.00014447	6575	DP690-13	109.16	109.16			0.95715	1.1182	29.378	2	0	Median	415340000	214430000	200910000	15975	821	14919	31507;31508	76234;76235;76236;76237;76238;76239	76239		6	9606
VQLAGFHILEALR	0	1	Unmodified	1465.8405	0.84053324	1598	Q8IUG5	MYO18B	Unconventional myosin-XVIIIb	yes	yes	0	0	0	10	0										1							20.064	20.064	3	8.1596E-05	16883	DP690-10	117.2	88.994			0.85152	1.0637	NaN	1	0	Median	30047000	18121000	11926000	15976	1598	14920	31509	76240;76241	76240		2	9606
VQLDLAETDLSQGVAR	0	1	Unmodified	1713.8897	0.88972785	1993	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	3	0			1														18.407	18.407	2	1.5688E-10	13075	DP690-3	170.04	140.5			0.85121	0.97094	NaN	1	0	Median	12988000	6822800	6165200	15977	1993	14921	31510	76242	76242		0	9606
VQLDTIQGELNAPTQFK	1	0	Unmodified	1900.9894	0.9894419	1539	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	12	0												1					18.805	18.805	2	0.0024216	14379	DP690-12	118.73	76.488			NaN	NaN	NaN	0	0	Median	15295000	15295000	0	15978	1539	14922	31511	76243;76244	76243		2	9606
VQLDVFTLSGFR	0	1	Unmodified	1380.7402	0.74015049	211	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	3	0			1														21.909	21.909	2	0.0063212	17440	DP690-3	82.261	54.179			0.91759	0.99635	NaN	1	0	Median	2294200	1144900	1149300	15979	211	14923	31512	76245	76245		1	9606
VQLFEDPTVDKEVEIR	1	1	Unmodified	1915.9891	0.98910755	847	P51948	MNAT1	CDK-activating kinase assembly factor MAT1	yes	yes	0	0	1	14	0														1			17.661	17.661	3	0.024388	12574	DP690-14	100.23	100.23			0.81396	1.0034	NaN	1	0	Median	51733000	26009000	25725000	15980	847	14924	31513	76246	76246		0	9606
VQLLQDLQDFFR	0	1	Unmodified	1520.7987	0.798728	234	O75044;P0DMP2;P0DJJ0;Q7Z6B7	SRGAP2;SRGAP2B;SRGAP2C;SRGAP1	SLIT-ROBO Rho GTPase-activating protein 2;SLIT-ROBO Rho GTPase-activating protein 2B;SLIT-ROBO Rho GTPase-activating protein 2C;SLIT-ROBO Rho GTPase-activating protein 1	yes	no	0	0	0	11	0											1						24.457	24.457	2	2.1759E-17	22225	DP690-11	204.34	123.6			NaN	NaN	NaN	0	0	Median	6521600	0	6521600	15981	234	14925	31514	76247;76248	76247		2	9606
VQLNLMDLVSGIPATQSQK	1	0	Oxidation (M)	2057.0827	0.082690357	1234	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	1	0	10	0										1							21.01	21.01	2	0.00029203	18271	DP690-10	127.36	83.495			NaN	NaN	NaN	0	0	Median	18654000	0	18654000	15982	1234	14926	31515	76249	76249	1889	1	9606
VQLPAYLKR	1	1	Unmodified	1086.655	0.6549643	1659	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	0	0	1	16	0																1	14.441	14.441	3	0.068099	7849	DP690-16	93.429	52.311			NaN	NaN	NaN	0	0	Median	0	0	0	15983	1659	14927	31516	76250	76250		1	9606
VQLSGPQEAEK	1	0	Unmodified	1184.6037	0.60371659	2409	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	6	0						1											11.601	11.601	2	0.048207	4014	DP690-6	87.298	39.695			NaN	NaN	NaN	0	0	Median	2980400	0	2980400	15984	2409	14928	31517	76251	76251		1	9606
VQLVQHAIQAASSIDAEDGLR	0	1	Unmodified	2220.1499	0.14985872	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	0	0	3	0			1														18.851	18.851	2	1.8715E-13	13683	DP690-3	192.32	148.5			NaN	NaN	NaN	0	0	Median	0	0	0	15985	2061	14929	31518	76252	76252		1	9606
VQLVVGDGR	0	1	Unmodified	941.52943	0.52942943	557	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	7	0							1										13.636	13.636	2	0.00067873	6620	DP690-7	141.52	69.643			0.89184	0.93111	NaN	1	0	Median	236280000	134410000	101870000	15986	557	14930	31519	76253;76254	76254		2	9606
VQNMALYADVGGK	1	0	Oxidation (M)	1380.6708	0.6707503	836	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	1	0	12	4								1								1	14.039	14.039	2	8.9944E-05	7240	DP690-16	131.42	77.352			0.86624	0.96673	2.5558	2	0	Median	167160000	88798000	78357000	15987	836	14931	31520;31521	76255;76256;76257;76258;76259;76260;76261;76262;76263	76258	1267	9	9606
VQPNEAVYTK	1	0	Unmodified	1147.5873	0.58733824	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	5.67	1.49				2	1	1	1	1									11.264	11.264	2	0.00027448	3800	DP690-4	125.16	58.731			0.88573	0.93903	11.155	6	0	Median	469580000	250120000	219460000	15988	469	14932	31522;31523;31524;31525;31526;31527	76264;76265;76266;76267;76268;76269;76270;76271;76272;76273;76274;76275;76276;76277	76269		14	9606
VQPQWSPPAGTQPCR	0	1	Unmodified	1707.8151	0.81512312	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	7	4			1								1						14.44	14.44	2	0.00051178	7858	DP690-3	107.03	81.788			0.66006	0.74675	NaN	1	0	Median	9999200	6616100	3383200	15989	797	14933	31528;31529	76278;76279;76280	76279		3	9606
VQQAELHTGSLPR	0	1	Unmodified	1434.7579	0.75792582	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															12.274	12.274	3	0.0019022	4440	DP690-2	85.672	60.224			0.97563	1.0179	NaN	1	0	Median	18673000	9121100	9552300	15990	1179	14934	31530	76281;76282;76283;76284;76285	76282		5	9606
VQQSSESSTSSPSQHEATPGAR	0	1	Unmodified	2257.0207	0.02069504	239	O75152;A0A1B0GTU1	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	no	0	0	0	12	2									1		1	1	1		1		10.216	10.216	3	2.4628E-24	2456	DP690-12	210.39	188.73			0.75059	0.90561	20.733	4	0	Median	184150000	105050000	79104000	15991	239	14935	31531;31532;31533;31534;31535	76286;76287;76288;76289;76290;76291;76292;76293;76294;76295;76296;76297;76298;76299;76300;76301;76302	76290		17	9606
VQQTVQDLFGR	0	1	Unmodified	1289.6728	0.67279921	695	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	10.2	2.79				1							3	2					17.205	17.205	2	0.00025487	11353	DP690-4	166.07	112.1			3.0112	3.3036	NaN	1	0	Median	139370000	102650000	36716000	15992	695	14936	31536;31537;31538;31539;31540;31541	76303;76304;76305;76306;76307;76308;76309;76310;76311;76312	76309		10	9606
VQREPLLTLVK	1	1	Unmodified	1294.7973	0.79727144	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	1	3	0			1														15.695	15.695	3	0.032906	9606	DP690-3	56.087	31.832			1.3372	1.483	NaN	1	0	Median	15685000	5909600	9775300	15993	1190	14937	31542	76313	76313		1	9606
VQRPPSAASAAPSSSK	1	1	Unmodified	1539.8005	0.80051892	1427	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	1	2	0		1															10.319	10.319	3	0.017462	2316	DP690-2	88.637	51.273			NaN	NaN	NaN	0	0	Median	5696900	0	5696900	15994	1427	14938	31543	76314	76314		1	9606
VQSGSESVIQEYVDLR	0	1	Unmodified	1807.8952	0.89520716	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.67	0.471									1	2							19.673	19.673	2	2.86E-27	14443	DP690-9	284.92	244.91			0.83572	0.9822	2.1215	2	0	Median	285620000	128680000	156940000	15995	1319	14939	31544;31545;31546	76315;76316;76317;76318;76319;76320;76321;76322	76320		8	9606
VQSLQATFGTFESILR	0	1	Unmodified	1795.9468	0.9468488	1131	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	12	0												1					23.235	23.235	2	2.7448E-17	19754	DP690-12	216.91	216.91			0.8822	1.0766	NaN	1	0	Median	6947600	3449600	3498000	15996	1131	14940	31547	76323;76324;76325;76326	76324		4	9606
VQSPEPPAPER	0	1	Unmodified	1205.6041	0.60405094	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							11.508	11.508	2	0.021608	4474	DP690-10	97.813	56.784			NaN	NaN	NaN	0	0	Median	30943000	0	30943000	15997	1254	14941	31548	76327;76328;76329	76329		3	9606
VQTDAFVSNELDDPDDLQCK	1	0	Unmodified	2308.0165	0.016520865	2350	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	12	0												2					18.348	18.348	2	0.0034471	13777	DP690-12	124.16	104.04			NaN	NaN	NaN	0	0	Median	10328000	10328000	0	15998	2350	14942	31549;31550	76330;76331;76332	76332		3	9606
VQTPEVDVK	1	0	Unmodified	1013.5393	0.53932542	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									1								12.799	12.799	2	0.0032898	5665	DP690-9	106.68	55.348			0.75757	0.91589	NaN	1	0	Median	35617000	17423000	18194000	15999	1145	14943	31551	76333;76334;76335;76336;76337;76338;76339	76338		7	9606
VQTVLGLVEPSK	1	0	Unmodified	1268.734	0.73400248	1829	Q96BW5	PTER	Phosphotriesterase-related protein	yes	yes	0	0	0	6	0						1											17.948	17.948	2	0.0011958	11742	DP690-6	103.34	64.774			0.82133	0.94422	NaN	1	0	Median	12640000	7437100	5202400	16000	1829	14944	31552	76340;76341;76342;76343	76342		4	9606
VQVALEELQDLK	1	0	Unmodified	1383.7609	0.76094551	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								19.021	19.021	2	5.4524E-05	13610	DP690-9	152.54	130.01			1.0961	1.2205	23.238	2	0	Median	31864000	15973000	15891000	16001	1264	14945	31553;31554	76344;76345;76346;76347;76348;76349	76346		6	9606
VQVFLPR	0	1	Unmodified	857.51232	0.51232281	818	P50452	SERPINB8	Serpin B8	yes	yes	0	0	0	6	0						1											15.716	15.716	2	0.060491	8982	DP690-6	103.28	31.906			NaN	NaN	NaN	0	0	Median	10003000	10003000	0	16002	818	14946	31555	76350	76350		1	9606
VQVMHSSIVAHQNFGLK	1	0	Oxidation (M)	1909.9833	0.98325108	1607	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	1	0	2	0		1															13.152	13.152	4	0.0063239	5506	DP690-2	58.658	42.295			4.4864	4.4574	NaN	1	0	Median	3361400	769270	2592100	16003	1607	14947	31556	76351	76351	2264	1	9606
VQVPNCDEIFYAGTGNLLLR	0	1	Unmodified	2278.1416	0.14160222	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	6.75	3.77			2							1	1						21.743	21.743	2	5.2199E-06	19154	DP690-10	150.11	121.31			NaN	NaN	NaN	0	0	Median	11761000	11761000	0	16004	878	14948	31557;31558;31559;31560	76352;76353;76354;76355;76356	76352		5	9606
VQVQDNEGCPVEALVK	1	0	Unmodified	1783.8774	0.87744861	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.2	4.6		1	2						1	1	1	1	1	1	1		16.663	16.663	2	3.0516E-22	11723	DP690-11	231.67	162.02			0.73343	0.86027	7.4822	8	0	Median	2462800000	1385400000	1077400000	16005	549	14949	31561;31562;31563;31564;31565;31566;31567;31568;31569;31570	76357;76358;76359;76360;76361;76362;76363;76364;76365;76366;76367;76368;76369;76370;76371;76372;76373;76374;76375;76376;76377;76378;76379;76380;76381;76382;76383	76361		27	9606
VQVSESGVHRPHVAGIHGR	0	2	Unmodified	2021.0667	0.066738213	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	1	11.2	1.48									1		1	1	1				10.455	10.455	5	0.0043469	2784	DP690-12	68.329	58.331			0.65718	0.73316	10.251	4	0	Median	908550000	527190000	381360000	16006	1932	14950	31571;31572;31573;31574	76384;76385;76386;76387	76385		3	9606
VQVVGTYR	0	1	Unmodified	920.50797	0.50796571	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	11	0											1						12.379	12.379	2	0.042637	5632	DP690-11	123.69	88.866			0.72878	0.75832	NaN	1	0	Median	700590000	390680000	309910000	16007	581	14951	31575	76388	76388		0	9606
VQYTAYEEGVHLVEVLYDEVAVPK	1	0	Unmodified	2749.3851	0.38506319	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										1							26.067	26.067	3	0.00035027	24291	DP690-10	87.468	87.468			0.84958	1.0332	NaN	1	0	Median	18578000	9845600	8732200	16008	1270	14952	31576	76389;76390;76391;76392;76393	76392		5	9606
VRAEMEVLLASK	1	1	Oxidation (M)	1360.7384	0.73843593	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	9	0									2								12.89	12.89	2;3	0.027506	5704	DP690-9	84.479	84.479			0.66624	0.77271	23.566	2	0	Median	50510000	32561000	17949000	16009	1319	14953	31577;31578	76394;76395;76396;76397;76398	76397	2008	5	9606
VRDGLPLSASTDYEQSTGMQECR	0	2	Oxidation (M)	2615.1592	0.15917913	1877	Q96IW7	SEC22A	Vesicle-trafficking protein SEC22a	yes	yes	0	1	1	15	0															1		14.869	14.869	3	2.6884E-07	8605	DP690-15	142.32	124.96			0.89675	0.97279	NaN	1	0	Median	8257500	3350200	4907300	16010	1877	14954	31579	76399;76400;76401;76402;76403;76404;76405	76403	2432	7	9606
VRDKLNNLVLFDK	2	1	Unmodified	1572.8988	0.8987764	995	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	2	16	0																1	15.335	15.335	3	0.022183	8974	DP690-16	60.901	37.059			0.94702	1.0462	NaN	1	0	Median	31538000	16300000	15237000	16011	995	14955	31580	76406;76407	76406		2	9606
VRELISDNQYR	0	2	Unmodified	1391.7157	0.71572665	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	11	0											2						12.638	12.638	2;3	0.0006165	5888	DP690-11	101.35	78.464			1.1762	1.45	5.384	2	0	Median	176810000	75226000	101580000	16012	581	14956	31581;31582	76408;76409;76410	76410		3	9606
VRIEGDNENKLPR	1	2	Unmodified	1538.8165	0.81650333	829	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	2	10.3	2.81				1					1		2	2	1				10.885	10.885	3;4	2.6388E-05	3475	DP690-11	131.06	113.94			0.81321	0.94901	14.167	7	0	Median	384500000	212880000	171620000	16013	829	14957	31583;31584;31585;31586;31587;31588;31589	76411;76412;76413;76414;76415;76416;76417;76418;76419;76420;76421	76413		10	9606
VRMNVLADALK	1	1	Oxidation (M)	1244.6911	0.69109181	968	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	1	1	16	0																1	13.894	13.894	2	0.052352	7066	DP690-16	77.744	34.462			0.90615	0.98025	NaN	1	0	Median	55447000	28273000	27173000	16014	968	14958	31590	76422	76422	1485	1	9606
VRPAELEQFESTIGFK	1	1	Unmodified	1849.9574	0.95741349	180	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	1	10	0										1							19.143	19.143	3	0.00021869	15498	DP690-10	105	78.174			0.87291	1.0871	NaN	1	0	Median	90255000	47623000	42631000	16015	180	14959	31591	76423;76424;76425	76423		3	9606
VRPCVVYGGADIGQQIR	0	2	Unmodified	1886.9785	0.97850006	96	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	1	9.5	3.2				1							2	1					15.134	15.134	2;3	4.6575E-12	9537	DP690-11	188.27	161.06			0.83653	1.0024	13.094	4	0	Median	1284700000	667880000	616780000	16016	96	14960	31592;31593;31594;31595	76426;76427;76428;76429;76430;76431;76432;76433;76434;76435;76436;76437;76438;76439	76427		14	9606
VRPDYTAQNLDHGK	1	1	Unmodified	1612.7958	0.79576789	1056	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	1	15	0															2		10.577	10.577	3;4	8.7556E-06	2968	DP690-15	134.81	113.27			0.86176	0.95657	1.3172	2	0	Median	228880000	124920000	103960000	16017	1056	14961	31596;31597	76440;76441;76442;76443	76440		4	9606
VRPGFCFHLCSR	0	2	Unmodified	1534.7286	0.72855672	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	1	11	0											1						14.198	14.198	3	0.050262	8207	DP690-11	68.463	29.069			NaN	NaN	NaN	0	0	Median	0	0	0	16018	1137	14962	31598	76444	76444		1	9606
VRPSTGNSASTPQSQCLPSEIEVK	1	1	Unmodified	2571.2599	0.25987945	2363	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	1	12	0												1					14.235	14.235	3	1.2266E-15	7886	DP690-12	169.33	149.15			0.61928	0.78763	NaN	1	0	Median	35669000	15959000	19710000	16019	2363	14963	31599	76445;76446;76447;76448;76449	76445		5	9606
VRTDITYPAGFMDVISIDK	1	1	Oxidation (M)	2156.0824	0.082356006	986	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	1	15	0															1		18.994	18.994	3	0.0038508	13984	DP690-15	66.536	48.641			0.80554	0.96425	NaN	1	0	Median	9182500	5343300	3839200	16020	986	14964	31600	76450;76451	76451	1504	2	9606
VRTELADKVTK	2	1	Unmodified	1258.7245	0.72450043	668	P35579	MYH9	Myosin-9	yes	yes	0	0	2	2	0		1															10.377	10.377	3	7.0117E-05	2388	DP690-2	114.76	80.263			1.1142	1.1456	NaN	1	0	Median	21095000	9968100	11127000	16021	668	14965	31601	76452	76452		1	9606
VRVHGPGIQSGTTNKPNK	2	1	Unmodified	1889.0231	0.023142064	549	P21333	FLNA	Filamin-A	yes	yes	0	0	2	10	0										1							10.271	10.271	4	0.00013544	2601	DP690-10	118.55	101.55			0.75577	0.86242	NaN	1	0	Median	210710000	106480000	104230000	16022	549	14966	31602	76453;76454	76453		2	9606
VSALNSVHCEHVEDEGESR	0	1	Unmodified	2152.9444	0.94435897	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		2															11.839	11.839	3;4	1.111E-06	4045	DP690-2	131.48	118.54			1.1686	1.2075	11.722	2	0	Median	16695000	7978500	8716700	16023	1179	14967	31603;31604	76455;76456;76457;76458;76459;76460;76461	76461		7	9606
VSALNVLR	0	1	Unmodified	870.5287	0.52870115	274	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	12	0												1					15.456	15.456	2	0.058207	9769	DP690-12	124.59	15.612			0.81545	0.96932	NaN	1	0	Median	63518000	34141000	29377000	16024	274	14968	31605	76462	76462		0	9606
VSAPEVSVGHK	1	0	Unmodified	1108.5877	0.58767259	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9	0									2								10.876	10.876	2;3	0.00016919	3270	DP690-9	102.53	59.234			0.72944	0.89366	16.331	2	0	Median	10411000	6429500	3981900	16025	1145	14969	31606;31607	76463;76464;76465;76466;76467;76468;76469	76465		7	9606
VSAPGVQGDVK	1	0	Unmodified	1055.5611	0.56112349	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							11.643	11.643	2	0.00013435	4029	DP690-9	137.05	109.16			0.79526	0.9622	10.64	2	0	Median	237370000	127130000	110240000	16026	1145	14970	31608;31609	76470;76471;76472;76473;76474;76475;76476;76477;76478	76475		9	9606
VSAQGITLTDNQR	0	1	Unmodified	1401.7212	0.72120596	2162	Q9HBL0;Q63HR2;Q68CZ2	TNS1;TNS2;TNS3	Tensin-1;Tensin-2;Tensin-3	yes	no	0	0	0	6.5	3.5			1							1							14.069	14.069	2	8.7991E-07	8203	DP690-10	195.51	154.48			0.87836	1.0456	3.1526	2	0	Median	117470000	60788000	56677000	16027	2162	14971	31610;31611	76479;76480;76481;76482	76481		4	9606
VSASTVPTDGSSR	0	1	Unmodified	1262.6103	0.61025853	1545	Q7Z434	MAVS	Mitochondrial antiviral-signaling protein	yes	yes	0	0	0	12	0												2					10.774	10.774	2	1.0165E-05	3222	DP690-12	158.47	108.93			NaN	NaN	NaN	0	0	Median	27342000	0	27342000	16028	1545	14972	31612;31613	76483;76484;76485;76486	76484		4	9606
VSDGGSSSTDFK	1	0	Unmodified	1185.515	0.51496116	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1															10.696	10.696	2	0.0050462	2837	DP690-2	85.533	56.372			1.0971	1.1005	NaN	1	0	Median	5310800	2388900	2921900	16029	1555	14973	31614	76487	76487		1	9606
VSDILHSIFSSYK	1	0	Unmodified	1494.7718	0.77184455	82	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			2														19.979	19.979	2;3	8.2839E-05	15217	DP690-3	117.03	90.371			1.1583	1.2293	5.3464	2	0	Median	59716000	28723000	30993000	16030	82	14974	31615;31616	76488;76489;76490;76491;76492;76493;76494	76492		7	9606
VSDKVMIPQDEYPEINFVGLLIGPR	1	1	Oxidation (M)	2844.4732	0.47316669	1341	Q15637	SF1	Splicing factor 1	yes	yes	0	1	1	12	0												1					23.283	23.283	3	0.056407	19762	DP690-12	57.692	49.281			NaN	NaN	NaN	0	0	Median	1492900	1492900	0	16031	1341	14975	31617	76495	76495		1	9606
VSDLQMLLGFVGR	0	1	Oxidation (M)	1449.765	0.76498503	1648	Q8N2W9	PIAS4	E3 SUMO-protein ligase PIAS4	yes	yes	0	1	0	12	0												1					22.933	22.933	2	0.0042548	19313	DP690-12	115.18	75.117			NaN	NaN	NaN	0	0	Median	1584500	1584500	0	16032	1648	14976	31618	76496;76497	76496	2276	2	9606
VSEAEFLAR	0	1	Unmodified	1020.524	0.52400971	1554	Q7Z6M4	MTERF4	Transcription termination factor 4, mitochondrial;mTERF domain-containing protein 2 processed	yes	yes	0	0	0	14	0														1			15.365	15.365	2	0.028102	9444	DP690-14	74.301	46.127			0.87954	1.0629	NaN	1	0	Median	56670000	31717000	24953000	16033	1554	14977	31619	76498	76498		1	9606
VSEFNVSSEGSGEK	1	0	Unmodified	1454.6525	0.65251728	2020	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	11	0											1						13.249	13.249	2	0.0017758	6871	DP690-11	134.08	70.649			NaN	NaN	NaN	0	0	Median	15315000	15315000	0	16034	2020	14978	31620	76499;76500	76499		2	9606
VSELKEELK	2	0	Unmodified	1073.5968	0.5968403	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	3	0			1														11.173	11.173	2	0.081684	3639	DP690-3	78.264	42.908			1.0093	1.097	NaN	1	0	Median	12079000	6511400	5567600	16035	1078	14979	31621	76501	76501		1	9606
VSELKEELKK	3	0	Unmodified	1201.6918	0.69180331	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	11	0											1						10.386	10.386	2	0.0069867	2692	DP690-11	151.83	71.607			NaN	NaN	NaN	0	0	Median	41860000	41860000	0	16036	1078	14980	31622	76502	76502		1	9606
VSELVQFLLIK	1	0	Unmodified	1287.7802	0.78022439	1897	Q96MG7	NDNL2	Melanoma-associated antigen G1	yes	yes	0	0	0	14	0														1			22.537	22.537	2	0.00022561	18807	DP690-14	122.33	106.13			0.90987	1.072	NaN	1	0	Median	7274200	3636400	3637800	16037	1897	14981	31623	76503;76504	76504		2	9606
VSEPVLSLPVR	0	1	Unmodified	1194.6972	0.69722304	1495	Q6P6C2	ALKBH5	RNA demethylase ALKBH5	yes	yes	0	0	0	13	0													1				17.778	17.778	2	0.00054432	12502	DP690-13	112.11	59.852			0.60556	0.74084	NaN	1	0	Median	34662000	21767000	12895000	16038	1495	14982	31624	76505;76506	76505		2	9606
VSEYVPEIVNFVQK	1	0	Unmodified	1649.8665	0.86647322	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	7.25	3.77			1	1							2						20.356	20.356	2	3.9812E-05	15522	DP690-3	152.69	152.69			0.82455	0.87225	10.551	2	0	Median	55481000	30301000	25180000	16039	797	14983	31625;31626;31627;31628	76507;76508;76509;76510;76511;76512;76513	76510		7	9606
VSFELFADK	1	0	Unmodified	1054.5335	0.53351176	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	12	4								1								1	19.115	19.115	2	0.00082675	12603	DP690-8	130.75	81.992			1.1201	1.1873	NaN	1	0	Median	66747000	31704000	35044000	16040	1008	14984	31629;31630	76514;76515;76516;76517;76518	76517		5	9606
VSFELFADKVPK	2	0	Unmodified	1378.7497	0.74965254	1008	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	1	12	4								2								2	17.979	17.979	2;3	0.00011815	11367	DP690-8	187.16	144.29			0.7304	0.83264	23.983	4	0	Median	97152000	54869000	42284000	16041	1008	14985	31631;31632;31633;31634	76519;76520;76521;76522;76523;76524;76525;76526;76527;76528;76529;76530;76531;76532;76533	76532		15	9606
VSFYQLSHFLQCK	1	0	Unmodified	1655.813	0.81299786	506	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	10.5	0.5										1	1						19.815	19.815	3	0.0002486	16360	DP690-11	120.57	104.58			0.88812	1.0687	21.063	2	0	Median	160820000	86353000	74465000	16042	506	14986	31635;31636	76534;76535;76536;76537;76538;76539	76538		6	9606
VSGAGFSPSSK	1	0	Unmodified	1022.5033	0.50327426	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	6	4		1								1							11.005	11.005	2	0.0044439	3819	DP690-10	121.83	48.582			0.72702	0.72673	NaN	1	0	Median	4148400	2475800	1672600	16043	2065	14987	31637;31638	76540;76541	76540		2	9606
VSGEEETENVGGANR	0	1	Unmodified	1546.6859	0.68594267	1864	Q96GS4	C17orf59	Uncharacterized protein C17orf59	yes	yes	0	0	0	14	0														1			10.958	10.958	2	0.0013942	3401	DP690-14	150.09	106.32			NaN	NaN	NaN	0	0	Median	0	0	0	16044	1864	14988	31639	76542	76542		1	9606
VSGFTFSHHPGQYNLCATSSDDGTVK	1	0	Unmodified	2811.2559	0.25585671	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0										1							15.168	15.168	4	2.042E-05	9784	DP690-10	119.18	106.87			0.90264	1.1144	NaN	1	0	Median	121660000	60855000	60806000	16045	1724	14989	31640	76543;76544;76545;76546	76545		4	9606
VSGHVITDIVEGK	1	0	Unmodified	1352.73	0.72997974	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11.3	0.471											2	1					15.483	15.483	2;3	9.4329E-05	10118	DP690-11	136.81	96.958			0.81035	0.92615	5.2823	3	0	Median	537650000	293480000	244170000	16046	891	14990	31641;31642;31643	76547;76548;76549;76550;76551;76552;76553;76554	76553		8	9606
VSGHVITDIVEGKK	2	0	Unmodified	1480.8249	0.82494275	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	1	11	0											1						13.952	13.952	4	0.019522	7912	DP690-11	54.234	54.234			1.2061	1.4539	NaN	1	0	Median	17503000	7155400	10348000	16047	891	14991	31644	76555	76555		1	9606
VSGISFPTTELLR	0	1	Unmodified	1418.7769	0.77692993	2027	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	3	0			1														20.007	20.007	2	0.00028841	15169	DP690-3	114.89	93.895			0.53366	0.5931	NaN	1	0	Median	5772800	3601400	2171400	16048	2027	14992	31645	76556;76557	76557		2	9606
VSGLMMANHTSISSLFER	0	1	Oxidation (M)	1994.9554	0.95538135	567	P23258	TUBG1	Tubulin gamma-1 chain	yes	yes	0	1	0	13	0													1				18.407	18.407	3	0.00085562	13437	DP690-13	108.96	75.162			NaN	NaN	NaN	0	0	Median	14025000	0	14025000	16049	567	14993	31646	76558;76559	76559	754	2	9606
VSGLPTPDLSWQLDGKPVRPDSAHK	2	1	Unmodified	2699.4031	0.40311329	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	2	11	0											1						16.78	16.78	4	1.1896E-10	11886	DP690-11	141.93	114.19			NaN	NaN	NaN	0	0	Median	244750000	244750000	0	16050	1758	14994	31647	76560;76561	76560		2	9606
VSGPDLDLNLK	1	0	Unmodified	1169.6292	0.62920306	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10.5	0.5										1	1						17.211	17.211	2	0.0032577	12722	DP690-10	91.584	48.276			0.61513	0.76087	NaN	1	0	Median	83233000	55623000	27610000	16051	1145	14995	31648;31649	76562;76563	76562		2	9606
VSGPGVEPHGVLR	0	1	Unmodified	1302.7044	0.70443369	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	5.75	3.77		2							1	1							12.299	12.299	2;3	9.8644E-05	5618	DP690-10	122.33	122.33			0.79078	0.94222	17.046	3	0	Median	586730000	340770000	245960000	16052	1270	14996	31650;31651;31652;31653	76564;76565;76566;76567;76568;76569;76570;76571;76572;76573;76574;76575;76576	76568		13	9606
VSGQGLHEGHTFEPAEFIIDTR	0	1	Unmodified	2439.1819	0.18188713	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	0.816									2	2	2						17.441	17.441	3;4	2.6203E-08	12978	DP690-10	144.18	128.94			0.6999	0.763	18.273	4	0	Median	1780399999.9999998	974440000	805930000	16053	549	14997	31654;31655;31656;31657;31658;31659	76577;76578;76579;76580;76581;76582;76583;76584;76585;76586;76587;76588;76589;76590;76591;76592;76593;76594;76595;76596	76577		20	9606
VSGQVQALQNHYR	0	1	Unmodified	1498.7641	0.76407383	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	11	0											1						12.315	12.315	2	0.0038223	5432	DP690-11	153.97	115.19			NaN	NaN	NaN	0	0	Median	0	0	0	16054	83	14998	31660	76597	76597		1	9606
VSGSINMLSLTQGLFR	0	1	Unmodified	1721.9134	0.91344018	1053	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	0	0	14	0														1			23.127	23.127	2	1.2343E-09	19564	DP690-14	194.39	169.56			0.98035	1.2136	NaN	1	0	Median	10461000	5262800	5197700	16055	1053	14999	31661	76598;76599;76600	76599		3	9606
VSGVDGYETEGIR	0	1	Unmodified	1380.6521	0.65212334	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	11	0											1						14.638	14.638	2	6.0431E-05	8891	DP690-11	154.24	154.24			0.71513	0.84674	NaN	1	0	Median	132000000	80142000	51860000	16056	1280	15000	31662	76601;76602;76603;76604;76605	76602		5	9606
VSHLLGINVTDFTR	0	1	Unmodified	1570.8467	0.84674083	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	6.25	4.26		2								1	1						18.446	18.446	2;3	1.7152E-05	11733	DP690-2	136.83	109.88			1.0317	1.1357	13.055	4	0	Median	424590000	217520000	207060000	16057	668	15001	31663;31664;31665;31666	76606;76607;76608;76609;76610;76611;76612;76613;76614;76615;76616	76611		11	9606
VSHVLAALQAGNR	0	1	Unmodified	1334.7419	0.74188183	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															13.557	13.557	3	0.016583	6011	DP690-2	44.511	28.755			1.3613	1.422	NaN	1	0	Median	12601000	5784200	6817200	16058	2482	15002	31667	76617;76618	76617		2	9606
VSHYIINSLPNR	0	1	Unmodified	1411.7572	0.75719754	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	6	0						2											14.119	14.119	2;3	2.2735E-05	7009	DP690-6	119.39	73.507			0.73099	0.77016	1.9788	2	0	Median	618290000	350860000	267430000	16059	753	15003	31668;31669	76619;76620;76621;76622;76623;76624;76625;76626	76622		8	9606
VSHYIINSLPNRR	0	2	Unmodified	1567.8583	0.85830857	753	P46109	CRKL	Crk-like protein	yes	yes	0	0	1	6.38	0.696						6	1	1									12.691	12.691	2;3;4	2.863E-05	5270	DP690-6	171.67	171.67			0.77072	0.82888	8.3965	8	0	Median	776110000	417730000	358380000	16060	753	15004	31670;31671;31672;31673;31674;31675;31676;31677	76627;76628;76629;76630;76631;76632;76633;76634;76635;76636;76637;76638;76639;76640;76641;76642;76643;76644;76645;76646	76635		20	9606
VSISEGDDKIEYR	1	1	Unmodified	1509.7311	0.73110195	558	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	14	0														1			13.875	13.875	2	0.015505	7332	DP690-14	121.29	59.727			NaN	NaN	NaN	0	0	Median	0	0	0	16061	558	15005	31678	76647	76647		1	9606
VSIVNHLEFLRDEELEER	0	2	Unmodified	2226.1281	0.12806065	1555	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	1	1.5	0.5	1	1															17.902	17.902	4	0.016267	11225	DP690-2	53.828	30.029			1.2503	1.2191	32.45	2	0	Median	7600800	3464200	4136500	16062	1555	15006	31679;31680	76648;76649;76650	76650		3	9606
VSLDVNHFAPDELTVK	1	0	Unmodified	1782.9152	0.91521432	374	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	11	4							1								1		17.982	17.982	3	4.6006E-07	12011	DP690-7	142.95	142.95			1.1674	1.2948	2.2451	2	0	Median	343700000	153810000	189890000	16063	374	15007	31681;31682	76651;76652;76653;76654;76655;76656;76657	76656		7	9606
VSLLNEQFLPLIR	0	1	Unmodified	1540.8977	0.89771377	2122	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	10	0										1							22.488	22.488	2	8.3081E-06	20052	DP690-10	189.58	189.58			0.8501	1.0615	NaN	1	0	Median	17252000	9390800	7861500	16064	2122	15008	31683	76658;76659;76660;76661	76659		4	9606
VSLPLFDFKR	1	1	Unmodified	1220.6917	0.69174374	86	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	1	10	0										1							18.87	18.87	3	0.0036945	15095	DP690-10	79.489	19.387			0.8024	1.001	NaN	1	0	Median	38185000	21085000	17100000	16065	86	15009	31684	76662;76663;76664;76665	76662		4	9606
VSMHQDNHGYICLLIQGATK	1	0	Oxidation (M)	2300.1042	0.10417086	1758	Q8WX93	PALLD	Palladin	yes	yes	0	1	0	11	0											1						17.144	17.144	4	0.0016407	12524	DP690-11	69.763	36.41			0.88382	1.0176	NaN	1	0	Median	163750000	89940000	73808000	16066	1758	15010	31685	76666;76667	76666	2331	2	9606
VSMPDVDLNLKGPK	2	0	Oxidation (M)	1527.7967	0.79667909	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	1	1	9	0									1								14.323	14.323	3	0.0017772	7596	DP690-9	82.515	60.757			0.69507	0.81817	NaN	1	0	Median	23753000	13857000	9895500	16067	1145	15011	31686	76668;76669;76670	76670	1799	3	9606
VSNLQYLHSYLTYIK	1	0	Unmodified	1840.9723	0.97233527	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	12	0												1					19.316	19.316	3	0.0046403	14962	DP690-12	96.247	58.593			NaN	NaN	NaN	0	0	Median	29237000	0	29237000	16068	2342	15012	31687	76671	76671		1	9606
VSPSTSYTPSR	0	1	Unmodified	1180.5724	0.57241646	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	4	0				2													11.286	11.286	2	0.00037537	3864	DP690-4	117.53	92.603			0.78107	0.90532	8.7745	2	0	Median	28960000	15205000	13756000	16069	2000	15013	31688;31689	76672;76673;76674;76675	76675		4	9606
VSQCNLCPTR	0	1	Unmodified	1233.5594	0.55942571	2223	Q9NUQ6	SPATS2L	SPATS2-like protein	yes	yes	0	0	0	12	0												3					11.246	11.246	2	0.0085583	3839	DP690-12	120.99	90.913			NaN	NaN	NaN	0	0	Median	9423500	0	9423500	16070	2223	15014	31690;31691;31692	76676;76677;76678	76678		3	9606
VSQFLQVLETDLYR	0	1	Unmodified	1709.8988	0.89883598	1899	Q96MW5	COG8	Conserved oligomeric Golgi complex subunit 8	yes	yes	0	0	0	12	0												1					23.185	23.185	2	0.003026	19719	DP690-12	88.187	61.038			0.79257	0.95781	NaN	1	0	Median	1780700	849560	931140	16071	1899	15015	31693	76679	76679		1	9606
VSQGSKDPAEGDGAQPEETPR	1	1	Unmodified	2153.9825	0.98251862	1288	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	1	3	0			1														10.52	10.52	3	7.0337E-10	2781	DP690-3	145.73	123.1			1.2565	1.3935	NaN	1	0	Median	13501000	5711100	7789800	16072	1288	15016	31694	76680;76681;76682	76680		3	9606
VSQMLILTPFQGQGHGAQLLETVHR	0	1	Oxidation (M)	2775.449	0.44901763	119	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	1	0	5	0					1												18.089	18.089	4	0.00018766	11973	DP690-5	91.378	54.641			1.0139	1.0532	NaN	1	0	Median	77782000	40263000	37519000	16073	119	15017	31695	76683;76684;76685	76684	130	3	9606
VSQPIEGHAASFAQFK	1	0	Unmodified	1715.8631	0.86311917	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	2	0		1															14.902	14.902	3	0.00075612	7627	DP690-2	86.548	62.357			1.2407	1.25	NaN	1	0	Median	11300000	4969100	6330800	16074	1075	15018	31696	76686;76687;76688;76689	76689		4	9606
VSQPTAEQAQAFK	1	0	Unmodified	1403.7045	0.70449327	455	P10398	ARAF	Serine/threonine-protein kinase A-Raf	yes	yes	0	0	0	4	0				1													12.931	12.931	2	0.0036251	5822	DP690-4	99.568	79.538			0.9885	1.0663	NaN	1	0	Median	7378800	3687500	3691300	16075	455	15019	31697	76690;76691	76691		2	9606
VSSDFLDLIQSLLCGQK	1	0	Unmodified	1921.9819	0.98191368	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	10	0										1							27.72	27.72	2	0.00059961	25978	DP690-10	108.59	83.36			0.83044	0.97843	NaN	1	0	Median	2552600	1333600	1218900	16076	106	15020	31698	76692;76693;76694;76695	76695		4	9606
VSSQNLVAIPVYVK	1	0	Unmodified	1515.8661	0.86607929	2447	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	13	0													1				18.493	18.493	2	0.0024934	13516	DP690-13	89.9	89.9			0.81045	0.93188	NaN	1	0	Median	88399000	47752000	40647000	16077	2447	15021	31699	76696;76697;76698	76696		3	9606
VSSTATTQDVIETLAEK	1	0	Unmodified	1791.9102	0.91018852	895	P55196	MLLT4	Afadin	yes	yes	0	0	0	10	0										1							19.11	19.11	2	0.0020406	15551	DP690-10	85.287	53.856			0.85259	1.0553	NaN	1	0	Median	64333000	33230000	31102000	16078	895	15022	31700	76699	76699		1	9606
VSTALSCLLGLPLR	0	1	Unmodified	1498.8541	0.85413439	85	O00442	RTCA	RNA 3'-terminal phosphate cyclase	yes	yes	0	0	0	14	0														1			22.609	22.609	2	0.00027155	18853	DP690-14	113.47	90.555			0.99028	1.2207	NaN	1	0	Median	12818000	5277600	7540400	16079	85	15023	31701	76700;76701;76702	76701		3	9606
VSTPATTTSTFSR	0	1	Unmodified	1354.6729	0.67285879	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	11	0											1						13.047	13.047	2	7.9796E-05	6460	DP690-11	152.54	121.97			0.73052	0.87541	NaN	1	0	Median	113040000	67862000	45179000	16080	1653	15024	31702	76703;76704;76705;76706	76705		4	9606
VSTTLNVAQAYYAR	0	1	Unmodified	1555.7995	0.79945628	189	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	3	0			1														16.702	16.702	2	0.051754	10955	DP690-3	80.916	39.836			1.199	1.3368	NaN	1	0	Median	6378200	3545600	2832500	16081	189	15025	31703	76707;76708	76707		2	9606
VSVFFGGLSIK	1	0	Unmodified	1152.6543	0.6542956	63	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	11	2									1				1				20.47	20.47	2	7.6932E-05	15969	DP690-13	174.02	126.37			0.78695	0.94056	8.4269	2	0	Median	106610000	57456000	49151000	16082	63	15026	31704;31705	76709;76710;76711;76712;76713;76714;76715	76710		7	9606
VSVFQTQLPSLGAGLLQSR	0	1	Unmodified	2000.1055	0.10547471	328	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	8	3.56			1							1	1						21.987	21.987	2	1.7762E-22	19219	DP690-11	218.21	195.72			0.79968	0.86902	53.63	3	0	Median	51540000	27963000	23577000	16083	328	15027	31706;31707;31708	76716;76717;76718;76719;76720;76721;76722;76723;76724;76725;76726	76719		11	9606
VSVGAPDLSLEASEGSIK	1	0	Unmodified	1757.9047	0.90470922	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	9.5	0.5									1	1							17.82	17.82	2	7.1358E-05	12202	DP690-9	122.66	122.66			0.63423	0.80868	NaN	1	0	Median	26633000	5003500	21629000	16084	1145	15028	31709;31710	76727;76728;76729;76730	76729		4	9606
VSVGIHKEDIDAAIETYNLLSER	1	1	Unmodified	2571.318	0.31804626	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	1	7	4			1								1						20.545	20.545	4	7.3162E-05	17310	DP690-11	117.22	100.71			0.78773	0.90379	8.6895	2	0	Median	86211000	52184000	34027000	16085	574	15029	31711;31712	76731;76732;76733;76734	76731		4	9606
VSVHVIEGDHR	0	1	Unmodified	1246.6418	0.64183343	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															10.598	10.598	3	7.5024E-05	2664	DP690-2	158.47	137.64			0.8718	0.90124	NaN	1	0	Median	352650000	186820000	165830000	16086	789	15030	31713	76735;76736;76737;76738	76736		4	9606
VSVIQDFVK	1	0	Unmodified	1033.5808	0.5807963	2334	Q9UFW8	CGGBP1	CGG triplet repeat-binding protein 1	yes	yes	0	0	0	16	0																1	17.85	17.85	2	0.0045213	12153	DP690-16	101.72	52.625			0.83201	0.97062	NaN	1	0	Median	23872000	13482000	10389000	16087	2334	15031	31714	76739;76740	76739		2	9606
VSVIQFLEAPIGDEDAEEAAAEK	1	0	Unmodified	2430.1802	0.18021537	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	10	0										1							23.122	23.122	2	5.8874E-10	20896	DP690-10	155.2	137.1			0.67486	0.81801	NaN	1	0	Median	8090200	4552300	3537800	16088	1254	15032	31715	76741	76741		1	9606
VSVIQFLEAPIGDEDAEEAAAEKR	1	1	Unmodified	2586.2813	0.2813264	1254	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	1	10	0										1							21.416	21.416	3	2.9849E-16	18613	DP690-10	175.65	175.65			0.65311	0.80264	NaN	1	0	Median	109820000	66285000	43530000	16089	1254	15033	31716	76742;76743;76744;76745;76746	76744		5	9606
VSVSPVVHVR	0	1	Unmodified	1077.6295	0.62947783	1750	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	12	0												3					12.299	12.299	3	0.00021256	5236	DP690-12	146.69	97.275			NaN	NaN	NaN	0	0	Median	0	0	0	16090	1750	15034	31717;31718;31719	76747;76748;76749	76749		3	9606
VSVTTNTTDSVSDEEK	1	0	Unmodified	1710.7796	0.77956828	2193	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	2	0		1															12.736	12.736	2	3.7354E-12	5020	DP690-2	201	158.28			0.83465	0.8272	NaN	1	0	Median	3084000	1737800	1346200	16091	2193	15035	31720	76750;76751;76752;76753	76751		4	9606
VSVVPDEVATIAAEVTSFSNR	0	1	Unmodified	2190.1168	0.11682726	1697	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	yes	yes	0	0	0	5	0					2												24.743	24.743	2	9.8955E-06	20027	DP690-5	124.62	87.676			NaN	NaN	NaN	0	0	Median	1178500	1178500	0	16092	1697	15036	31721;31722	76754;76755	76754		2	9606
VSWQDLKDFMR	1	1	Unmodified	1423.6918	0.69182009	1193	Q13243	SRSF5	Serine/arginine-rich splicing factor 5	yes	yes	0	0	1	14	0														1			20.033	20.033	3	0.020891	15727	DP690-14	61.344	27.583			0.75644	0.94726	NaN	1	0	Median	14801000	7142900	7658200	16093	1193	15037	31723	76756	76756		1	9606
VSYFAVFDGHGGIR	0	1	Unmodified	1523.7521	0.75211216	2087	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	13	0													1				18.099	18.099	3	0.0062636	12974	DP690-13	135.1	89.207			NaN	NaN	NaN	0	0	Median	55448000	55448000	0	16094	2087	15038	31724	76757;76758;76759	76757		3	9606
VSYFPTVPGVYIVSTK	1	0	Unmodified	1755.9447	0.94472354	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							20.881	20.881	2	6.4924E-07	17978	DP690-10	148.13	126.35			0.7083	0.83488	NaN	1	0	Median	277600000	162220000	115390000	16095	250	15039	31725	76760;76761;76762;76763;76764;76765	76763		6	9606
VSYIGVCQSK	1	0	Unmodified	1139.5645	0.56449431	1410	Q56VL3	OCIAD2	OCIA domain-containing protein 2	yes	yes	0	0	0	12	4								1								1	13.246	13.246	2	4.4165E-05	6234	DP690-16	199.7	175.19			0.90418	0.95458	7.5308	2	0	Median	984570000	512060000	472520000	16096	1410	15040	31726;31727	76766;76767;76768;76769;76770;76771;76772;76773	76768		8	9606
VSYLEIYNEEILDLLCPSR	0	1	Unmodified	2325.1562	0.15624923	311	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	0	10	0										1							26.115	26.115	2	1.6352E-09	24352	DP690-10	148.41	127.06			0.75599	0.89442	NaN	1	0	Median	2117800	1048800	1069000	16097	311	15041	31728	76774;76775;76776;76777	76775		4	9606
VTAEVVLAHLGGGSTSR	0	1	Unmodified	1652.8846	0.8845829	375	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	12	0												2					16.74	16.74	2;3	3.3948E-24	11457	DP690-12	263.89	263.89			0.84625	0.95942	6.4518	2	0	Median	479260000	260470000	218790000	16098	375	15042	31729;31730	76778;76779;76780;76781	76780		4	9606
VTAIHIDPATHR	0	1	Unmodified	1329.7153	0.71533272	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														11.192	11.192	3	1.6162E-05	3391	DP690-2	202.31	169.45			0.80382	0.87555	4.6022	2	0	Median	80762000	43916000	36846000	16099	789	15043	31731;31732	76782;76783;76784;76785;76786;76787;76788;76789;76790	76787		9	9606
VTAPDVDLHLK	1	0	Unmodified	1206.6608	0.66083754	1145	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	10	0										1							15.055	15.055	3	0.026441	9601	DP690-10	73.9	32.474			NaN	NaN	NaN	0	0	Median	0	0	0	16100	1145	15044	31733	76791	76791		1	9606
VTAPQPAATNGDLASR	0	1	Unmodified	1567.7954	0.79543354	1068	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	11	0											2						12.922	12.922	2	0.0037647	6339	DP690-11	117.27	66.001			NaN	NaN	NaN	0	0	Median	28331000	28331000	0	16101	1068	15045	31734;31735	76792;76793;76794;76795	76794		4	9606
VTAQGPGLEPSGNIANK	1	0	Unmodified	1651.8529	0.85294842	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	12.1	2.42									2	1	1	1	1	1	1	1	13.562	13.562	2	1.3331E-22	7272	DP690-11	232.78	205.89			0.70658	0.76068	11.973	9	0	Median	5042000000	2948999999.9999995	2092999999.9999998	16102	549	15046	31736;31737;31738;31739;31740;31741;31742;31743;31744	76796;76797;76798;76799;76800;76801;76802;76803;76804;76805;76806;76807;76808;76809;76810;76811;76812;76813;76814;76815;76816;76817;76818;76819;76820;76821;76822;76823;76824;76825;76826;76827;76828;76829;76830	76802		35	9606
VTASGPGLSSYGVPASLPVDFAIDAR	0	1	Unmodified	2546.3017	0.30166791	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	9.5	0.5									1	1							22.126	22.126	2	6.2743E-46	19587	DP690-10	241.64	241.64			0.59006	0.7369	NaN	1	0	Median	67590000	41581000	26009000	16103	250	15047	31745;31746	76831;76832;76833;76834;76835;76836	76831		6	9606
VTCDQTYLLR	0	1	Unmodified	1267.6231	0.62307182	2208	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	0	8	3.08					1	1		1					1				15.219	15.219	2	8.8449E-05	8439	DP690-6	156.35	95.437			0.78645	0.89722	2.134	3	0	Median	321350000	173170000	148180000	16104	2208	15048	31747;31748;31749;31750	76837;76838;76839;76840;76841;76842;76843;76844;76845;76846;76847;76848	76847		12	9606
VTDDLVCLVYK	1	0	Unmodified	1323.6744	0.67443869	795	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	0	0	0	12	4								1								1	19.19	19.19	2	2.8285E-06	13690	DP690-16	200.86	144.42			0.80346	0.91033	2.0018	2	0	Median	88046000	48306000	39740000	16105	795	15049	31751;31752	76849;76850;76851;76852;76853	76851		5	9606
VTDFGDKVEDPTFLNQLQSGVNR	1	1	Unmodified	2578.2663	0.26634504	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	7.5	3.2		1							2	1							19.172	19.172	3	6.233699999999999E-21	13819	DP690-9	194.7	173.57			1.4731	1.7086	NaN	1	0	Median	22627000	12595000	10032000	16106	1264	15050	31753;31754;31755;31756	76854;76855;76856;76857;76858;76859;76860	76857		7	9606
VTDPVGDIVSFMHSFEEK	1	0	Oxidation (M)	2051.951	0.95100748	1834	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	1	0	13	0													1				20.684	20.684	3	0.037292	16391	DP690-13	48.711	17.597			0.74972	0.86747	NaN	1	0	Median	16417000	8933000	7484400	16107	1834	15051	31757	76861	76861	2409	1	9606
VTDPVGDIVSFMHSFEEK	1	0	Unmodified	2035.9561	0.95609286	1834	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	13	0													1				24.164	24.164	3	0.00041788	20370	DP690-13	98.552	82.029			0.74675	0.84263	NaN	1	0	Median	6367600	3162900	3204700	16108	1834	15051	31758	76862;76863;76864;76865;76866	76866		5	9606
VTEAEIVPMGK	1	0	Oxidation (M)	1188.606	0.60602477	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	9.5	0.5									1	1							13.596	13.596	2	0.0042611	7436	DP690-10	93.111	93.111			0.70785	0.87369	NaN	1	0	Median	113760000	69473000	44283000	16109	250	15052	31759;31760	76867;76868;76869	76867	253	3	9606
VTEAEIVPMGK	1	0	Unmodified	1172.6111	0.61111015	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							15.184	15.184	2	0.026342	9806	DP690-10	70.399	44.591			0.77353	0.95516	NaN	1	0	Median	129260000	63940000	65322000	16110	250	15052	31761	76870;76871	76871		2	9606
VTEEDIVELFCVCGALK	1	0	Unmodified	1980.9537	0.95365002	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	13	0													1				23.706	23.706	2	2.0629E-07	19913	DP690-13	164.81	105.39			0.73187	0.80618	NaN	1	0	Median	2414900	1337800	1077100	16111	2045	15053	31762	76872;76873;76874;76875	76873		4	9606
VTEELLTDNR	0	1	Unmodified	1188.5986	0.59863121	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	4	0				1													14.237	14.237	2	0.0033041	7572	DP690-4	93.649	50.78			0.70033	0.81644	NaN	1	0	Median	13465000	8441300	5023700	16112	2342	15054	31763	76876;76877	76877		2	9606
VTEETVYTCTGHPLK	1	0	Unmodified	1733.8294	0.82943578	711	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	14	0														3			13.051	13.051	2;3	1.2877E-15	6172	DP690-14	255.52	206.52			0.80891	0.95897	41.262	3	0	Plateau	307170000	173290000	133880000	16113	711	15055	31764;31765;31766	76878;76879;76880;76881;76882;76883;76884;76885	76884		8	9606
VTEFGGELHEDGGK	1	0	Unmodified	1473.6736	0.67358707	2334	Q9UFW8	CGGBP1	CGG triplet repeat-binding protein 1	yes	yes	0	0	0	15.5	0.5															1	1	12.916	12.916	2;3	0.0040594	5826	DP690-16	121.68	88.417			0.83244	0.98211	NaN	1	0	Median	23217000	9835700	13381000	16114	2334	15056	31767;31768	76886;76887;76888;76889	76888		4	9606
VTEGLTDVILYHQPDDK	1	0	Unmodified	1941.9684	0.96837211	207	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	8	4				1								1					17.568	17.568	3	0.00026608	12650	DP690-12	88.385	74.385			0.76256	0.85362	0.75449	2	0	Median	118680000	68273000	50412000	16115	207	15057	31769;31770	76890;76891;76892	76891		3	9606
VTEGLVDVILYHQPDDK	1	0	Unmodified	1939.9891	0.98910755	176	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	12	0												1					19.441	19.441	3	0.00012897	15134	DP690-12	107.63	79.652			0.82947	0.985	NaN	1	0	Median	76368000	44497000	31871000	16116	176	15058	31771	76893;76894;76895;76896	76896		4	9606
VTELALTASDR	0	1	Unmodified	1174.6194	0.61936665	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	4.17	3.8	2	2							1	1							14.624	14.624	2	1.2475E-10	7291	DP690-2	183.43	111.2			0.83218	0.8944	3.701	2	0	Median	995240000	534390000	460850000	16117	1046	15059	31772;31773;31774;31775;31776;31777	76897;76898;76899;76900;76901;76902;76903;76904;76905;76906;76907;76908;76909;76910;76911	76905		15	9606
VTELEDEVR	0	1	Unmodified	1088.535	0.53496832	2014	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	13	0													1				13.645	13.645	2	1.4138E-15	6821	DP690-13	194.44	120.03			NaN	NaN	NaN	0	0	Median	72984000	72984000	0	16118	2014	15060	31778	76912;76913	76912		2	9606
VTENQIPAK	1	0	Unmodified	998.53966	0.53965977	2190	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	10.7	0.471										1	2						10.611	10.611	2	0.0053312	3178	DP690-10	98.458	67.169			0.79542	0.8556	NaN	1	0	Median	1166900000	747850000	419030000	16119	2190	15061	31779;31780;31781	76914;76915;76916;76917	76914		4	9606
VTEQLIEAINNGDFEAYTK	1	0	Unmodified	2154.0481	0.04807899	1224	Q13557	CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit delta	yes	yes	0	0	0	13	0													2				20.856	20.856	2	0.00025085	16523	DP690-13	180.95	142.65			NaN	NaN	NaN	0	0	Median	0	0	0	16120	1224	15062	31782;31783	76918;76919	76919		2	9606
VTFQFSYGTK	1	0	Unmodified	1176.5815	0.58152458	2494	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	13	0													1				17.066	17.066	2	0.0098531	11561	DP690-13	83.869	34.333			0.86379	0.99979	NaN	1	0	Median	46948000	25991000	20957000	16121	2494	15063	31784	76920	76920		1	9606
VTFVNFTVTR	0	1	Unmodified	1182.6397	0.63970816	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								18.34	18.34	2	9.1249E-05	12769	DP690-9	181.41	151.24			1.1346	1.289	2.4783	2	0	Median	29266000	14498000	14768000	16122	1264	15064	31785;31786	76921;76922;76923;76924;76925;76926	76925		6	9606
VTGEADVEFATHEDAVAAMAK	1	0	Oxidation (M)	2176.9947	0.99466321	901	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	1	0	13	0													5				22.607	22.607	2;3	1.1181E-20	9416	DP690-13	214.65	30.895			0.77419	0.84986	NaN	1	0	Median	295460000	150060000	145410000	16123	901	15065	31787;31788;31789;31790;31791	76927;76928;76929;76930;76931;76932;76933;76934	76933	1399	8	9606
VTGEADVEFATHEDAVAAMSK	1	0	Oxidation (M)	2192.9896	0.98957783	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	12.3	2.45					1								8	1			20.627	20.627	2;3	2.8755000000000004E-41	9061	DP690-13	254.72	149.53			0.83609	1.0159	21.156	7	0	Median	1440200000	756150000	684010000	16124	639	15066	31792;31793;31794;31795;31796;31797;31798;31799;31800;31801	76935;76936;76937;76938;76939;76940;76941;76942;76943;76944;76945;76946;76947;76948;76949;76950;76951;76952;76953;76954;76955;76956;76957;76958;76959;76960;76961	76942	892	27	9606
VTGEADVEFATHEDAVAAMSK	1	0	Unmodified	2176.9947	0.99466321	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	12.3	2.21					1								11				26.578	26.578	2;3	5.0964E-44	11246	DP690-13	264.03	17.064			0.84948	0.9232	23.06	7	0	Median	402320000	205210000	197110000	16125	639	15066	31802;31803;31804;31805;31806;31807;31808;31809;31810;31811;31812;31813	76962;76963;76964;76965;76966;76967;76968;76969;76970;76971;76972;76973;76974;76975;76976;76977;76978;76979;76980;76981	76966		20	9606
VTGEADVEFATHEEAVAAMSK	1	0	Oxidation (M)	2207.0052	0.005227897	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	12.6	1.86					1								16	1			24.98	24.98	2;3	2.4172E-36	10388	DP690-13	234.63	220.59			0.89758	0.97736	13.648	14	0	Median	1687599999.9999998	888710000	798890000	16126	856	15067	31814;31815;31816;31817;31818;31819;31820;31821;31822;31823;31824;31825;31826;31827;31828;31829;31830;31831	76982;76983;76984;76985;76986;76987;76988;76989;76990;76991;76992;76993;76994;76995;76996;76997;76998;76999;77000;77001;77002;77003;77004;77005;77006;77007;77008;77009;77010;77011;77012;77013;77014;77015;77016;77017;77018;77019;77020	76986	1300	38	9606
VTGEADVEFATHEEAVAAMSK	1	0	Unmodified	2191.0103	0.010313275	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	12.5	2.03					1								13	1			25.032	25.032	2;3	5.3817E-42	11848	DP690-13	230.96	197.65			0.86601	0.93492	14.504	11	0	Median	637920000	356560000	281350000	16127	856	15067	31832;31833;31834;31835;31836;31837;31838;31839;31840;31841;31842;31843;31844;31845;31846	77021;77022;77023;77024;77025;77026;77027;77028;77029;77030;77031;77032;77033;77034;77035;77036;77037;77038;77039;77040;77041;77042;77043;77044;77045;77046	77034		24	9606
VTGGYPFEAYK	1	0	Unmodified	1230.5921	0.59208927	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														16.18	16.18	2	0.0013248	10197	DP690-3	103.88	70.986			0.95167	0.9995	NaN	1	0	Median	47196000	27846000	19349000	16128	5	15068	31847	77047;77048;77049;77050	77048		4	9606
VTGLFPGNYVESIMHYTD	0	0	Oxidation (M)	2057.9404	0.9404428	1636	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	1	0	12	0												1					21.333	21.333	2	0.074544	17500	DP690-12	74.78	27.795			NaN	NaN	NaN	0	0	Median	0	0	0	16129	1636	15069	31848	77051	77051		1	9606
VTGPPPGTPQPR	0	1	Unmodified	1202.6408	0.6407708	2201	Q9NRL3	STRN4	Striatin-4	yes	yes	0	0	0	12	0												1					21.355	21.355	2	0.016915	17634	DP690-12	72.607	34.795			0.93174	1.1422	NaN	1	0	Median	3906200	2142400	1763800	16130	2201	15070	31849	77052	77052		1	9606
VTGPSHFQDVR	0	1	Unmodified	1241.6153	0.61528433	2339	Q9UHB4	NDOR1	NADPH-dependent diflavin oxidoreductase 1	yes	yes	0	0	0	4	0				1													11.194	11.194	3	0.033445	3574	DP690-4	54.343	24.8			0.83504	0.97249	NaN	1	0	Median	10774000	6006400	4767100	16131	2339	15071	31850	77053	77053		1	9606
VTHAVVTVPAYFNDAQR	0	1	Unmodified	1886.9639	0.96389585	462	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	6.33	3.3				2							1						16.126	16.126	2;3	1.0078E-07	10009	DP690-4	144.73	115.77			1.0695	1.2444	32.834	3	0	Median	298140000	143320000	154820000	16132	462	15072	31851;31852;31853	77054;77055;77056;77057;77058;77059;77060;77061;77062;77063;77064	77059		11	9606
VTHVEPWEK	1	0	Unmodified	1123.5662	0.56620887	1447	Q5VTL8	PRPF38B	Pre-mRNA-splicing factor 38B	yes	yes	0	0	0	12	0												1					11.78	11.78	2	0.02023	4488	DP690-12	102.51	62.447			NaN	NaN	NaN	0	0	Median	10988000	0	10988000	16133	1447	15073	31854	77065;77066	77065		2	9606
VTIAQGGVLPNIQAVLLPK	1	0	Unmodified	1930.1615	0.16153303	442;1370;378	Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13;Q93077;Q7L7L0;P04908	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3;HIST1H2AC;HIST3H2A;HIST1H2AB	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E	no	no	0	0	0	14.9	2.75							1	2							1	20	25.949	25.949	2;3	3.9396E-32	16019	DP690-8	263.7	263.7			0.84226	0.96037	12.3	16	0	Median	1217700000	634390000	583340000	16134	442;1370;378	15074	31855;31856;31857;31858;31859;31860;31861;31862;31863;31864;31865;31866;31867;31868;31869;31870;31871;31872;31873;31874;31875;31876;31877;31878	77067;77068;77069;77070;77071;77072;77073;77074;77075;77076;77077;77078;77079;77080;77081;77082;77083;77084;77085;77086;77087;77088;77089;77090;77091;77092;77093;77094;77095;77096;77097;77098;77099;77100;77101;77102;77103;77104;77105;77106;77107;77108;77109;77110;77111;77112;77113;77114;77115;77116;77117;77118;77119;77120;77121;77122;77123	77120		56	9606
VTILELFR	0	1	Unmodified	989.59097	0.59096706	464	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	yes	yes	0	0	0	11.3	1.7									1			1	1				21.868	21.868	2	0.017234	17734	DP690-13	172.15	99.107			0.69817	0.84862	12.943	3	0	Plateau	63205000	35200000	28004000	16135	464	15075	31879;31880;31881	77124;77125;77126	77125		0	9606
VTILGHVQR	0	1	Unmodified	1021.6033	0.60326308	1089	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	3	0			1														12.208	12.208	2	0.077754	4887	DP690-3	58.815	40.906			0.90976	1.0175	NaN	1	0	Median	7035100	4177100	2858000	16136	1089	15076	31882	77127	77127		1	9606
VTIMGIYSIK	1	0	Unmodified	1123.6311	0.63111731	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	7	4			1								1						19.343	19.343	2	0.00076441	15675	DP690-11	111.06	77.139			0.97004	1.0793	2.6964	2	0	Median	155000000	77199000	77798000	16137	652	15077	31883;31884	77128;77129;77130;77131;77132;77133;77134	77130		7	9606
VTIMGIYSIK	1	0	Oxidation (M)	1139.626	0.62603194	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	0	3	0			1														17.161	17.161	2	0.079993	11513	DP690-3	64.841	29.689			0.76952	0.81271	NaN	1	0	Median	38058000	20628000	17431000	16138	652	15077	31885	77135	77135		1	9606
VTIMPKDIQLAR	1	1	Oxidation (M)	1399.7857	0.78572048	1036	Q71DI3;Q16695;P84243;P68431;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C	yes	no	0	1	1	16	0																1	14.416	14.416	3	0.062798	7797	DP690-16	55.258	27.928			0.74341	0.80503	NaN	1	0	Median	53865000	28212000	25653000	16139	1036	15078	31886	77136	77136		0	9606
VTIPPPSSSVAISNHVTPPPIPK	1	0	Unmodified	2334.2947	0.29473204	1679	Q8NC96	NECAP1	Adaptin ear-binding coat-associated protein 1	yes	yes	0	0	0	14	0														2			16.777	16.777	3	0.0013591	11191	DP690-14	69.27	60.315			0.50506	0.60843	NaN	1	0	Median	111300000	67073000	44227000	16140	1679	15079	31887;31888	77137;77138;77139	77137		3	9606
VTLADITVVCTLLWLYK	1	0	Unmodified	2007.1115	0.11147129	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	13	0													1				27.489	27.489	2	9.4579E-08	23620	DP690-13	170.95	156.93			0.92921	1.0459	NaN	1	0	Median	5760100	2812000	2948100	16141	598	15080	31889	77140;77141;77142;77143;77144;77145;77146	77143		7	9606
VTLDPVQLESSLLR	0	1	Unmodified	1568.8774	0.87737225	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9.33	0.471									2	1							21.771	21.771	2	0.0014672	16947	DP690-9	171.92	119.43			NaN	NaN	NaN	0	0	Median	10900000	0	10900000	16142	2411	15081	31890;31891;31892	77147;77148;77149	77149		3	9606
VTLGTQPTVLR	0	1	Unmodified	1183.6925	0.69247202	1355	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	11	0											1						15.049	15.049	2	0.0099675	9400	DP690-11	78.556	48.239			0.96185	1.1518	NaN	1	0	Median	54672000	26013000	28658000	16143	1355	15082	31893	77150	77150		1	9606
VTLILELLQHK	1	0	Unmodified	1305.802	0.80202247	2122	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	10	0										1							20.346	20.346	3	0.021198	17276	DP690-10	80.916	60.601			NaN	NaN	NaN	0	0	Median	5764700	0	5764700	16144	2122	15083	31894	77151	77151		1	9606
VTLLDGTEYSCDLEK	1	0	Unmodified	1741.808	0.80803164	180	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	10	0										1							18.363	18.363	2	2.2573E-05	14415	DP690-10	185.3	151.43			0.99238	1.2271	NaN	1	0	Median	61541000	33924000	27617000	16145	180	15084	31895	77152	77152		1	9606
VTLLEGDHVR	0	1	Unmodified	1137.6142	0.6142217	264	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	7	4			1								1						13.037	13.037	3	0.029144	6078	DP690-3	56.548	25.935			1.5337	1.6727	NaN	1	0	Median	9502900	1406900	8096000	16146	264	15085	31896;31897	77153;77154;77155	77154		3	9606
VTLMLLDQNNR	0	1	Unmodified	1315.6918	0.69182009	1172	Q12933	TRAF2	TNF receptor-associated factor 2	yes	yes	0	0	0	12	0												1					18.285	18.285	2	0.019226	13557	DP690-12	100.25	20.014			NaN	NaN	NaN	0	0	Median	0	0	0	16147	1172	15086	31898	77156	77156		1	9606
VTLPGLKEDSQILK	2	0	Unmodified	1539.8872	0.88720866	13	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	1	10	0										1							16.859	16.859	3	0.0016465	12218	DP690-10	84.734	48.734			0.69873	0.79956	NaN	1	0	Median	250130000	147770000	102360000	16148	13	15087	31899	77157;77158	77157		2	9606
VTLSEGPHHVALFK	1	0	Unmodified	1533.8304	0.83036248	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	3	0			1														13.93	13.93	4	0.011005	7226	DP690-3	59.225	59.225			0.83523	0.87596	NaN	1	0	Median	4903200	2602700	2300500	16149	203	15088	31900	77159;77160;77161	77160		3	9606
VTLTSEEEAR	0	1	Unmodified	1133.5564	0.55643205	352	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	6	0						1											12.119	12.119	2	2.9577E-05	4626	DP690-6	175.91	115.23			1.5056	1.6653	NaN	1	0	Median	37329000	15272000	22058000	16150	352	15089	31901	77162;77163;77164;77165	77165		4	9606
VTLVQTLEIQR	0	1	Unmodified	1298.7558	0.75580056	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	7	3.56		1							1	1							18.277	18.277	2	1.9357E-12	14220	DP690-10	309.38	272.79			0.7872	0.93779	1.166	2	0	Median	192080000	97872000	94212000	16151	1319	15090	31902;31903;31904	77166;77167;77168;77169;77170;77171;77172;77173;77174	77166		9	9606
VTMLFLGLHNVR	0	1	Unmodified	1398.7806	0.78057552	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	12	0												1					18.251	18.251	3	0.04926	13515	DP690-12	73.632	49.356			NaN	NaN	NaN	0	0	Median	22795000	22795000	0	16152	495	15091	31905	77175;77176	77175		2	9606
VTMLFLGLHNVR	0	1	Oxidation (M)	1414.7755	0.77549014	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	1	0	4	0				1													16.471	16.471	3	0.00041599	10455	DP690-4	105.4	105.4			0.9694	1.1034	NaN	1	0	Median	24041000	13269000	10773000	16153	495	15091	31906	77177;77178;77179	77179	631	3	9606
VTMNDEDMDTYVFAVGTR	0	1	2 Oxidation (M)	2094.8874	0.88742095	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	2	0	12	0												1					17.411	17.411	2	1.4955E-16	12394	DP690-12	201.3	188.94			0.93507	1.1222	NaN	1	0	Median	20535000	10018000	10517000	16154	1814	15092	31907	77180;77181;77182;77183	77180	2395;2396	4	9606
VTMNDEDMDTYVFAVGTR	0	1	Oxidation (M)	2078.8925	0.89250633	1814	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	1	0	12	0												3					19.125	19.125	2	2.5711E-10	14821	DP690-12	161.04	117.15			1.1299	1.3666	NaN	1	0	Median	15633000	8724800	6908600	16155	1814	15092	31908;31909;31910	77184;77185;77186	77184	2395;2396	3	9606
VTMQNLNDR	0	1	Unmodified	1089.5237	0.52369213	42;40;29;30;50;53	CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Z0;Q7Z3Z0;CON__Q7Z3Y9;Q7Z3Y9;CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779;CON__P02535-1;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q7Z3Y8;Q7Z3Y8	KRT10;KRT28;KRT25;KRT26;KRT14;KRT16;KRT27	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 27	no	no	0	0	0	6.38	3.16	1	1			1		1	1	2	1							12.394	12.394	2	0.00042516	4257	DP690-1	150.4	79.874		+	NaN	NaN	NaN	0	0	Median	107220000	107220000	0	16156	42;29;40;30;50;53	15093	31911;31912;31913;31914;31915;31916;31917;31918	77187;77188;77189;77190;77191;77192;77193;77194;77195;77196;77197;77198	77188		12	9606
VTMQNLNDR	0	1	Oxidation (M)	1105.5186	0.51860675	42;40;29;30;50;53	CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Z0;Q7Z3Z0;CON__Q7Z3Y9;Q7Z3Y9;CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779;CON__P02535-1;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q7Z3Y8;Q7Z3Y8	KRT10;KRT28;KRT25;KRT26;KRT14;KRT16;KRT27	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 27	no	no	0	1	0	1	0	2																12.509	12.509	2	0.034933	4376	DP690-1	101.72	57.372		+	NaN	NaN	NaN	0	0	Median	0	0	0	16157	42;29;40;30;50;53	15093	31919;31920	77199;77200	77200	31;32	2	9606
VTMQNLNDRLASYLDKVR	1	2	Oxidation (M)	2151.1106	0.11063644	42;40;29	CON__P13645;P13645;CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779	KRT10;KRT14;KRT16	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16	no	no	0	1	2	10	6				1												1	17.449	17.449	4	0.020806	11635	DP690-16	73.252	36.161		+	NaN	NaN	NaN	0	0	Median	50295000	50295000	0	16158	42;29;40	15094	31921;31922	77201;77202;77203	77202	31	3	9606
VTNEFVHINNLK	1	0	Unmodified	1426.7569	0.75686319	98	O00743	PPP6C	Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed	yes	yes	0	0	0	6	0						1											14.665	14.665	3	0.0019721	7754	DP690-6	117.14	107.82			2.3427	2.6919	NaN	1	0	Median	12841000	3451900	9388900	16159	98	15095	31923	77204;77205	77204		2	9606
VTPAVVAYSENEEIVGLAAK	1	0	Unmodified	2059.0837	0.083736215	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	12	0												1					19.63	19.63	2	3.0147999999999996E-32	15384	DP690-12	261.45	236.48			0.81118	0.97513	NaN	1	0	Median	20733000	11399000	9333300	16160	1147	15096	31924	77206;77207;77208;77209;77210	77208		5	9606
VTPCIPCSLEGHPLVLPSR	0	1	Unmodified	2131.0918	0.091815255	2272	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	9	0									1								17.974	17.974	3	0.027047	12388	DP690-9	48.919	35.498			0.59116	0.73982	NaN	1	0	Median	4583600	2788700	1794900	16161	2272	15097	31925	77211	77211		1	9606
VTPEPGAGPTQGLLR	0	1	Unmodified	1491.8045	0.80454166	1595	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	12	0												1					15.402	15.402	2	0.030639	9637	DP690-12	61.03	12.032			0.75752	0.91528	NaN	1	0	Median	16146000	9783100	6363200	16162	1595	15098	31926	77212;77213	77213		2	9606
VTPNEGLTVSFPFGK	1	0	Unmodified	1591.8246	0.8246084	1286	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	10	0										1							19.86	19.86	2	0.0041369	16581	DP690-10	80.69	57.678			0.61195	0.75218	NaN	1	0	Median	40372000	22202000	18170000	16163	1286	15099	31927	77214;77215;77216;77217	77215		4	9606
VTPNPDLLDLVQTADEK	1	0	Unmodified	1866.9575	0.95747307	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	11.5	0.5											1	1					20.797	20.797	2	1.7082E-07	17614	DP690-11	164.13	134.83			0.77308	0.90889	5.4051	2	0	Median	197970000	100540000	97433000	16164	1653	15100	31928;31929	77218;77219;77220;77221	77219		4	9606
VTPQSLFILFGVYGDVQR	0	1	Unmodified	2038.0888	0.088762013	595	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	12.3	0.471												2	1				24.817	24.817	2	0.00034149	21071	DP690-13	107.14	89.738			0.69144	0.79752	NaN	1	0	Median	1942800	1067500	875340	16165	595	15101	31930;31931;31932	77222;77223;77224;77225;77226;77227;77228	77224		7	9606
VTPTRTEIIILATR	0	2	Unmodified	1582.9406	0.94064121	569	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	15	0															1		16.539	16.539	3	0.045755	10837	DP690-15	79.804	35.557			NaN	NaN	NaN	0	0	Median	16245000	0	16245000	16166	569	15102	31933	77229;77230	77229		2	9606
VTPVEVMPVFPDFK	1	0	Unmodified	1603.832	0.83200197	1666	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	12	0												1					21.67	21.67	2	0.0064569	17931	DP690-12	88.441	68.834			0.72745	0.88212	NaN	1	0	Median	4624700	2688800	1935900	16167	1666	15103	31934	77231;77232;77233	77233		3	9606
VTQALNVLTTTFGR	0	1	Unmodified	1519.8358	0.83584179	1500	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	0	0	3	0			1														19.8	19.8	2	0.01902	14902	DP690-3	69.815	69.815			1.3207	1.5061	NaN	1	0	Median	12874000	6412800	6460900	16168	1500	15104	31935	77234	77234		1	9606
VTQDATPGSALDK	1	0	Unmodified	1301.6463	0.64630969	1085	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	0	0	4	0				1													11.796	11.796	2	0.00020281	4427	DP690-4	118.9	67.712			0.97302	1.0456	NaN	1	0	Median	5285900	2503100	2782800	16169	1085	15105	31936	77235;77236	77236		2	9606
VTQDELKEVFEDAAEIR	1	1	Unmodified	1990.9848	0.98475045	534	P19338	NCL	Nucleolin	yes	yes	0	0	1	10	3.58			1								2	1	1				20.948	20.948	3	5.8643E-10	17792	DP690-11	204.81	162.03			0.89487	0.94524	21.945	5	0	Median	498260000	255530000	242730000	16170	534	15106	31937;31938;31939;31940;31941	77237;77238;77239;77240;77241;77242;77243;77244	77237		8	9606
VTQLDPKEEEVSLQGINTR	1	1	Unmodified	2155.1121	0.11207623	2526	Q9Y6W5	WASF2	Wiskott-Aldrich syndrome protein family member 2	yes	yes	0	0	1	8	4				1								1					16.211	16.211	3	4.2387E-30	10207	DP690-4	233.38	213.21			0.72349	0.84148	1.4391	2	0	Median	112830000	66043000	46783000	16171	2526	15107	31942;31943	77245;77246;77247;77248;77249	77249		5	9606
VTSAVEALLSADSASR	0	1	Unmodified	1575.8104	0.8104149	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	3	0			1														19.337	19.337	2	9.1348E-17	14284	DP690-3	281.17	200.46			NaN	NaN	NaN	0	0	Median	0	0	0	16172	746	15108	31944	77250	77250		1	9606
VTSEELHYFVQNHFTSAR	0	1	Unmodified	2164.0338	0.033766329	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13.2	0.433													3	1			16.927	16.927	2;3;4	4.3573E-07	11303	DP690-13	138.81	123.21			0.79244	0.70172	12.367	3	0	Plateau	3525399999.9999995	1935799999.9999998	1589499999.9999998	16173	565	15109	31945;31946;31947;31948	77251;77252;77253;77254;77255;77256	77251		6	9606
VTSGGVSESPSGFSK	1	0	Unmodified	1424.6783	0.6783381	112	O14757	CHEK1	Serine/threonine-protein kinase Chk1	yes	yes	0	0	0	12	0												1					12.586	12.586	2	0.00018449	5553	DP690-12	148.78	105.01			NaN	NaN	NaN	0	0	Median	15979000	15979000	0	16174	112	15110	31949	77257;77258	77257		2	9606
VTSSITIYPSDSSSPR	0	1	Unmodified	1695.8315	0.83154427	1573	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	11	0											1						15.441	15.441	2	0.067503	10030	DP690-11	85.554	46.772			NaN	NaN	NaN	0	0	Median	0	0	0	16175	1573	15111	31950	77259	77259		1	9606
VTSSLGDIPVSR	0	1	Unmodified	1229.6616	0.66156582	2364	Q9UJY4	GGA2	ADP-ribosylation factor-binding protein GGA2	yes	yes	0	0	0	8	4				1								1					15.299	15.299	2	0.032773	9010	DP690-4	66.595	14.317			0.95017	1.1213	21.833	2	0	Median	27877000	13980000	13897000	16176	2364	15112	31951;31952	77260;77261;77262	77262		3	9606
VTTQTSLPLFR	0	1	Unmodified	1261.703	0.7030367	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	4	0				1													17.795	17.795	2	8.6939E-05	12075	DP690-4	176.6	89.771			0.65624	0.73145	NaN	1	0	Median	36763000	20662000	16101000	16177	1227	15113	31953	77263;77264;77265;77266;77267	77263		5	9606
VTTSLEALPTGTVLTDK	1	0	Unmodified	1744.9458	0.94584575	1601	Q8IV63	VRK3	Inactive serine/threonine-protein kinase VRK3	yes	yes	0	0	0	12	0												1					18.452	18.452	2	0.023147	13873	DP690-12	59.796	9.0044			0.84262	1.0227	NaN	1	0	Median	11988000	5366900	6621300	16178	1601	15114	31954	77268	77268		1	9606
VTTVTEIGKDVIGLR	1	1	Unmodified	1599.9196	0.91957142	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	1	6.5	3.5			1							1							18.163	18.163	3	4.0295E-06	12857	DP690-3	172.85	148.78			1.4869	1.7537	50.525	2	0	Median	125930000	42704000	83230000	16179	878	15115	31955;31956	77269;77270;77271;77272;77273	77273		4	9606
VTTVVATPGQGPDRPQEVSYTDTK	1	1	Unmodified	2545.266	0.26601069	811	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	1	13.3	0.471													2	1			14.081	14.081	3	9.9639E-07	7532	DP690-13	136.46	107.72			0.88502	1.0884	31.924	3	0	Median	378610000	223590000	155030000	16180	811	15116	31957;31958;31959	77274;77275;77276;77277;77278;77279;77280;77281;77282	77277		9	9606
VTVAGGVHISGLHTESAPR	0	1	Unmodified	1886.9963	0.99625861	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		2															13.557	13.557	3;4	9.9303E-11	6058	DP690-2	159.64	133.09			0.79291	0.82399	1.0426	2	0	Median	177930000	99558000	78373000	16181	789	15117	31960;31961	77283;77284;77285;77286;77287;77288;77289	77288		7	9606
VTVAGLAGK	1	0	Unmodified	814.49125	0.49125301	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	7	0							1										13.102	13.102	2	0.04021	6002	DP690-7	70.525	7.3772			0.8372	0.89351	NaN	1	0	Median	84151000	44630000	39521000	16182	1939	15118	31962	77290	77290		1	9606
VTVAGLAGKDPVQCSR	1	1	Unmodified	1656.8617	0.86173896	1939	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	1	7.25	0.433							3	1									13.899	13.899	2;3	8.0048E-17	6924	DP690-7	221.09	176.45			0.75916	0.82777	4.2581	4	0	Median	968640000	553220000	415420000	16183	1939	15119	31963;31964;31965;31966	77291;77292;77293;77294;77295;77296;77297;77298;77299;77300	77295		10	9606
VTVDQVTDR	0	1	Unmodified	1031.5247	0.52473799	1673	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	3	0			1														12.648	12.648	2	0.038338	5506	DP690-3	90.709	54.008			NaN	NaN	NaN	0	0	Median	8764600	0	8764600	16184	1673	15120	31967	77301	77301		1	9606
VTVDTGVIPASEEKAETPTAAEDDNEGDKK	3	0	Unmodified	3115.4681	0.46807713	228	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	2	10	0										1							14.179	14.179	4	4.4541E-05	8295	DP690-10	92.499	80.868			0.8158	0.87493	NaN	1	0	Median	99203000	53185000	46018000	16185	228	15121	31968	77302;77303	77302		2	9606
VTVEDPALQIPPFR	0	1	Unmodified	1580.8562	0.85624288	202	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	10	0										1							19.792	19.792	2	0.041919	16485	DP690-10	87.184	47.126			NaN	NaN	NaN	0	0	Median	12286000	0	12286000	16186	202	15122	31969	77304	77304		1	9606
VTVGDITCTGEGTSK	1	0	Unmodified	1523.7137	0.71373732	265	O75569	PRKRA	Interferon-inducible double-stranded RNA-dependent protein kinase activator A	yes	yes	0	0	0	14	0														1			14.411	14.411	2	2.6785E-06	8089	DP690-14	178.1	145.35			0.92008	1.115	NaN	1	0	Median	32935000	15936000	16999000	16187	265	15123	31970	77305;77306;77307	77306		3	9606
VTVLFAGQHIAK	1	0	Unmodified	1282.7398	0.73975656	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.18	3.59		2							2	2	2	2	1				14.549	14.549	2;3	0.00026198	8755	DP690-10	151.83	151.83			0.83999	0.95645	7.5631	11	0	Median	7006499999.999999	3810699999.9999995	3195699999.9999995	16188	549	15124	31971;31972;31973;31974;31975;31976;31977;31978;31979;31980;31981	77308;77309;77310;77311;77312;77313;77314;77315;77316;77317;77318;77319;77320;77321;77322;77323;77324;77325;77326;77327;77328;77329;77330;77331;77332;77333;77334;77335;77336;77337;77338;77339;77340;77341	77313		34	9606
VTVLFAGQHISK	1	0	Unmodified	1298.7347	0.73467118	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										2							14.504	14.504	2;3	0.0081199	8768	DP690-10	86.344	86.344			0.85192	0.99703	2.0308	2	0	Median	737700000	403880000	333820000	16189	250	15125	31982;31983	77342;77343;77344;77345	77342		4	9606
VTVLFAGQNIER	0	1	Unmodified	1345.7354	0.73539946	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	6	4		1								1							17.23	17.23	2	4.3364E-05	12749	DP690-10	152.04	152.04			4.392	5.025	NaN	1	0	Median	380570000	98471000	282100000	16190	1270	15126	31984;31985	77346;77347;77348;77349	77346		4	9606
VTVLGHVQR	0	1	Unmodified	1007.5876	0.58761301	518;415	P17858;P08237	PFKL;PFKM	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, muscle type	no	no	0	0	0	3	0			1														10.914	10.914	2	0.014453	3345	DP690-3	85.064	48.507			1.1758	1.3395	NaN	1	0	Median	12431000	5587800	6842800	16191	518;415	15127	31986	77350;77351	77350		2	9606
VTVNPGLLVPLDVK	1	0	Unmodified	1462.8759	0.87591569	52	Q6KB66;CON__Q6KB66-1	KRT80	Keratin, type II cytoskeletal 80	yes	no	0	0	0	13	0													1				20.425	20.425	2	0.0002679	15931	DP690-13	113.67	97.664		+	0.63891	0.74201	NaN	1	0	Median	34075000	19956000	14119000	16192	52	15128	31987	77352;77353;77354;77355	77352		4	9606
VTVNTNMVDLNDYLQHILK	1	0	Unmodified	2229.1464	0.14635325	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	11	0											1						22.362	22.362	3	2.6615E-17	19722	DP690-11	197.75	173.03			0.8651	1.0541	NaN	1	0	Median	33619000	18029000	15590000	16193	877	15129	31988	77356;77357;77358	77356		3	9606
VTWAHPEFGQVLASCSFDR	0	1	Unmodified	2206.0266	0.026572462	1840	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	14	0														1			19.001	19.001	3	0.00053259	14324	DP690-14	87.24	69.308			0.9744	1.1771	NaN	1	0	Median	58041000	31315000	26725000	16194	1840	15130	31989	77359	77359		1	9606
VTWDSSFCAVNPR	0	1	Unmodified	1537.6984	0.69836203	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	13	0													1				17.598	17.598	2	4.213E-05	12313	DP690-13	177.06	140.48			0.85963	0.97613	NaN	1	0	Median	258560000	145700000	112860000	16195	2395	15131	31990	77360;77361;77362	77361		3	9606
VTWIQASTLK	1	0	Unmodified	1145.6445	0.64445919	772	P47989	XDH	Xanthine dehydrogenase/oxidase;Xanthine dehydrogenase;Xanthine oxidase	yes	yes	0	0	0	1	0	1																16.875	16.875	2	0.014877	8309	DP690-1	104.01	58.932			NaN	NaN	NaN	0	0	Median	1724300	1724300	0	16196	772	15132	31991	77363	77363		1	9606
VTYCPTEPGNYIINIK	1	0	Unmodified	1880.9342	0.93423521	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.67	0.471									1	2							18.747	18.747	2	3.836E-07	14914	DP690-10	161.93	116.28			0.60296	0.74461	NaN	1	0	Median	262080000	214630000	47446000	16197	549	15133	31992;31993;31994	77364;77365;77366;77367;77368	77365		5	9606
VTYCPTEPGTYIINIK	1	0	Unmodified	1867.939	0.93898623	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	6	4		1								1							18.909	18.909	2	5.5577E-07	15154	DP690-10	182.92	156.17			0.75357	0.92955	NaN	1	0	Median	96712000	54405000	42307000	16198	1270	15134	31995;31996	77369;77370;77371	77370		3	9606
VTYDSDATSSACR	0	1	Unmodified	1431.5936	0.59362219	146	O15243	LEPROT	Leptin receptor gene-related protein	yes	yes	0	0	0	10	0										1							11.409	11.409	2	0.0010441	4280	DP690-10	102.53	81.694			0.80778	1.0125	NaN	1	0	Median	13268000	7940500	5327200	16199	146	15135	31997	77372	77372		1	9606
VTYHPDGPEGQAYDVDFTPPFR	0	1	Unmodified	2507.1394	0.13935361	1316	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	4	0				1													18.511	18.511	3	0.00053607	12965	DP690-4	79.341	61.09			0.97756	1.1348	NaN	1	0	Median	6278200	3341400	2936800	16200	1316	15136	31998	77373;77374;77375	77374		3	9606
VTYTPMAPGSYLISIK	1	0	Oxidation (M)	1755.9117	0.91170885	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	10.5	0.5										1	1						19.06	19.06	2	5.562E-07	15314	DP690-10	166.7	135.88			0.73997	0.8007	NaN	1	0	Median	862280000	500420000	361860000	16201	549	15137	31999;32000	77376;77377;77378;77379;77380;77381	77378	711	6	9606
VTYTPMAPGSYLISIK	1	0	Unmodified	1739.9168	0.91679423	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	11	0.816										1	1	1					20.166	20.166	2	6.2222E-07	16909	DP690-10	150.14	130.94			0.75037	0.84606	15.109	3	0	Median	638430000	353860000	284570000	16202	549	15137	32001;32002;32003	77382;77383;77384;77385;77386;77387;77388;77389	77382		8	9606
VVAEELENVR	0	1	Unmodified	1156.6088	0.60880197	1693	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	6	0						1											14.694	14.694	2	5.2353E-05	7763	DP690-6	214.29	167.9			0.82085	0.89353	NaN	1	0	Median	60569000	32682000	27887000	16203	1693	15138	32004	77390;77391;77392;77393	77393		4	9606
VVAEPVELAQEFR	0	1	Unmodified	1485.7827	0.78274359	258	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	15	0															1		19.069	19.069	2	0.0030502	14068	DP690-15	128.51	78.041			NaN	NaN	NaN	0	0	Median	7881000	7881000	0	16204	258	15139	32005	77394;77395;77396	77396		3	9606
VVAEVYDQER	0	1	Unmodified	1206.5881	0.58806652	2348	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	12	0												1					12.907	12.907	2	0.00037961	6129	DP690-12	122.13	66.765			1.1227	1.3307	NaN	1	0	Median	43227000	19992000	23235000	16205	2348	15140	32006	77397;77398;77399;77400	77399		4	9606
VVAIYDYTK	1	0	Unmodified	1070.5648	0.56481189	1636	Q8IZP0;Q9NYB9	ABI1;ABI2	Abl interactor 1;Abl interactor 2	yes	no	0	0	0	12	0												1					15.639	15.639	2	0.021124	9873	DP690-12	78.334	52.395			0.71176	0.84859	NaN	1	0	Median	55258000	31746000	23511000	16206	1636	15141	32007	77401;77402;77403	77401		3	9606
VVALSMSPVDDTFISGSLDK	1	0	Oxidation (M)	2096.0347	0.034737111	1508	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	14	0														1			19.82	19.82	2	1.302E-11	15307	DP690-14	168	127.63			0.69062	0.83145	NaN	1	0	Median	26339000	16146000	10193000	16207	1508	15142	32008	77404;77405;77406;77407;77408;77409;77410	77404	2193	7	9606
VVALSMSPVDDTFISGSLDK	1	0	Unmodified	2080.0398	0.039822489	1508	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	14	0														1			21.243	21.243	2	4.9195E-10	17185	DP690-14	183.28	132.81			0.73912	0.8845	NaN	1	0	Median	20838000	11846000	8992000	16208	1508	15142	32009	77411;77412;77413	77411		3	9606
VVANSKESYELR	1	1	Unmodified	1393.7201	0.72014333	665	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	1	16	0																1	11.183	11.183	3	0.021444	3854	DP690-16	58.781	41.087			0.8053	0.92437	NaN	1	0	Median	10507000	4322600	6184400	16209	665	15143	32010	77414	77414		1	9606
VVAPTISSPVCQEQLVEAGR	0	1	Unmodified	2139.0994	0.099403054	2482	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	0		1															17.622	17.622	2	1.7801E-06	10899	DP690-2	136.33	98.807			1.0931	1.1185	NaN	1	0	Median	2067400	1181500	885910	16210	2482	15144	32011	77415;77416;77417;77418	77418		4	9606
VVASGPGLEHGK	1	0	Unmodified	1149.6142	0.6142217	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										2							10.383	10.383	3	0.0012517	2770	DP690-10	117.09	82.289			NaN	NaN	NaN	0	0	Median	95729000	0	95729000	16211	250	15145	32012;32013	77419;77420;77421;77422;77423	77421		5	9606
VVCFNHDNTLLATGGTDGYVR	0	1	Unmodified	2308.0906	0.090629281	2171	Q9HCU5	PREB	Prolactin regulatory element-binding protein	yes	yes	0	0	0	13	0													1				16.78	16.78	3	4.9246E-07	11154	DP690-13	138.28	116.35			0.69575	0.85177	NaN	1	0	Median	33392000	20038000	13354000	16212	2171	15146	32014	77424;77425	77424		2	9606
VVCSSGAVGNYSGGLAVK	1	0	Unmodified	1723.8563	0.85631924	505	P16455	MGMT	Methylated-DNA--protein-cysteine methyltransferase	yes	yes	0	0	0	15	0															1		15.045	15.045	2	0.0078175	8825	DP690-15	122.46	51.429			NaN	NaN	NaN	0	0	Median	0	0	0	16213	505	15147	32015	77426	77426		1	9606
VVDALGNAIDGK	1	0	Unmodified	1170.6245	0.62445203	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	12.5	0.5												1	1				15.522	15.522	2	8.0603E-05	9540	DP690-13	130.94	110.65			0.94497	1.0551	20.995	2	0	Median	455850000	241010000	214840000	16214	585	15148	32016;32017	77427;77428;77429;77430;77431;77432	77432		6	9606
VVDALGNAIDGKGPIGSK	2	0	Unmodified	1709.9312	0.93119874	585	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	13	0													1				15.591	15.591	3	1.8986E-06	9528	DP690-13	127.88	101.17			0.92473	1.0377	NaN	1	0	Median	61682000	35902000	25780000	16215	585	15149	32018	77433;77434;77435;77436;77437	77434		5	9606
VVDESDETENQEEK	1	0	Unmodified	1649.6904	0.69041892	273	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	11	0											1						10.589	10.589	2	0.0033351	2939	DP690-11	147.62	121.18			NaN	NaN	NaN	0	0	Median	0	0	0	16216	273	15150	32019	77438	77438		1	9606
VVDLAPLHLDAR	0	1	Unmodified	1317.7405	0.74048484	2504	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	10	1									1		1						16.966	16.966	3	0.00058797	12230	DP690-11	97.779	74.264			0.86716	1.0636	21.649	2	0	Median	92250000	47177000	45073000	16217	2504	15151	32020;32021	77439;77440;77441;77442	77439		4	9606
VVDLLAPYAK	1	0	Unmodified	1087.6277	0.6277465	392	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	13	0													1				18.19	18.19	2	0.014886	13148	DP690-13	76.827	55.855			0.67425	0.7801	NaN	1	0	Median	50420000	29585000	20836000	16218	392	15152	32022	77443	77443		1	9606
VVDLLNQAALITNDSK	1	0	Unmodified	1712.9309	0.93086439	1791	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	10	0										1							20.086	20.086	2	0.00052225	16934	DP690-10	126.83	126.83			0.75555	0.93432	NaN	1	0	Median	61663000	36486000	25176000	16219	1791	15153	32023	77444	77444		1	9606
VVDLMAHMASK	1	0	Oxidation (M)	1216.5944	0.59441423	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	1	0	6	0						1											11.978	11.978	3	0.066594	4546	DP690-6	63.864	28.685			NaN	NaN	NaN	0	0	Median	8922200	0	8922200	16220	371	15154	32024	77445	77445	395	1	9606
VVDLMAHMASKE	1	0	Oxidation (M)	1345.637	0.63700733	371	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	1	1	6	0						1											12.256	12.256	2	0.03308	4979	DP690-6	72.243	48.815			1.4974	1.6962	NaN	1	0	Median	5979500	2404100	3575300	16221	371	15155	32025	77446;77447	77447	395	2	9606
VVDNSALGNSPYHR	0	1	Unmodified	1527.743	0.74300404	1486	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	yes	yes	0	0	0	16	0																4	12.201	12.201	2;3	6.0379E-06	4904	DP690-16	196.48	133.85			0.77402	0.85723	NaN	1	0	Median	89323000	53814000	35509000	16222	1486	15156	32026;32027;32028;32029	77448;77449;77450;77451;77452;77453;77454;77455	77454		8	9606
VVDRDSEEAEIIR	0	2	Unmodified	1529.7686	0.76855009	439	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	11	0											1						13.233	13.233	3	0.0012492	6816	DP690-11	89.507	64.179			0.83714	1.032	NaN	1	0	Median	132240000	60785000	71451000	16223	439	15157	32030	77456	77456		1	9606
VVDSMEDEVQR	0	1	Oxidation (M)	1321.582	0.58199487	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	0	9.33	3.77				1								2					11.582	11.582	2	6.4967E-05	3159	DP690-12	182.76	145.42			0.86246	0.94756	3.6897	2	0	Median	1047099999.9999999	497370000	549710000	16224	2434	15158	32031;32032;32033	77457;77458;77459;77460;77461;77462;77463;77464;77465;77466;77467	77459	2877	11	9606
VVDSMEDEVQR	0	1	Unmodified	1305.5871	0.58708025	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	8	4				1								1					13.368	13.368	2	6.1142E-08	6701	DP690-12	286.87	230.15			0.90662	1.0078	8.194	2	0	Median	500470000	256100000	244370000	16225	2434	15158	32034;32035	77468;77469;77470;77471;77472;77473	77471		6	9606
VVDSMEDEVQRR	0	2	Unmodified	1461.6882	0.68819127	2434	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	1	12	0												2					12.406	12.406	2;3	4.5418E-07	5322	DP690-12	182.39	143.09			1.0337	1.1721	0.31897	2	0	Median	399820000	194990000	204830000	16226	2434	15159	32036;32037	77474;77475;77476;77477;77478;77479	77477		6	9606
VVEDIEYLK	1	0	Unmodified	1106.5859	0.58594126	314	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	14	0														1			16.239	16.239	2	0.0024426	10584	DP690-14	110.12	88.672			0.7544	0.89869	NaN	1	0	Median	132960000	73520000	59436000	16227	314	15160	32038	77480;77481;77482	77482		3	9606
VVEGTPLIDGR	0	1	Unmodified	1154.6295	0.62953741	1292	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	11.8	1.09										1		2	1				14.762	14.762	2	0.00094012	8667	DP690-12	107.21	39.189			0.90585	1.0889	2.912	2	0	Median	139480000	54342000	85138000	16228	1292	15161	32039;32040;32041;32042	77483;77484;77485;77486;77487	77484		5	9606
VVESPDFSKDEDYLGK	2	0	Unmodified	1826.8574	0.85742467	2530	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	1	3	0			1														16.061	16.061	3	0.00031048	10084	DP690-3	99.566	89.908			0.77914	0.84366	NaN	1	0	Median	17854000	9803700	8050400	16229	2530	15162	32043	77488;77489;77490	77488		3	9606
VVETDPSPYCIVAPDTVIHCEGEPIKR	1	1	Unmodified	3080.4947	0.49470677	893	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	3	0			1														17.076	17.076	4	0.046843	11437	DP690-3	34.7	10.424			0.63512	0.7044	NaN	1	0	Median	14036000	8102500	5933600	16230	893	15163	32044	77491	77491		0	9606
VVETELQEGATK	1	0	Unmodified	1302.6667	0.66671078	1696	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	9	0									1								12.611	12.611	2	6.7542E-05	5336	DP690-9	134.84	91.402			0.88823	1.118	NaN	1	0	Median	6194700	3468200	2726600	16231	1696	15164	32045	77492;77493;77494;77495	77493		4	9606
VVEVLAGHGHLYSR	0	1	Unmodified	1535.8209	0.82086043	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.4	0.49		3	2														12.992	12.992	2;3;4	4.8284E-06	5309	DP690-2	175.88	175.88			0.92638	0.97263	20.086	4	0	Median	160880000	88079000	72801000	16232	789	15165	32046;32047;32048;32049;32050	77496;77497;77498;77499;77500;77501;77502;77503;77504;77505;77506;77507;77508;77509;77510;77511;77512	77498		17	9606
VVFAELACR	0	1	Unmodified	1063.5485	0.54845032	1687	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	11	0											1						16.642	16.642	2	0.0009675	11754	DP690-11	126.28	89.119			0.55866	0.67212	NaN	1	0	Median	74031000	56845000	17187000	16233	1687	15166	32051	77513;77514	77513		2	9606
VVFQEFR	0	1	Unmodified	923.4865	0.48650199	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	10	0										1							15.778	15.778	2	0.041368	10681	DP690-10	111.28	39.283			NaN	NaN	NaN	0	0	Median	84987000	84987000	0	16234	668	15167	32052	77515;77516	77516		2	9606
VVFSTGPQSTK	1	0	Unmodified	1149.603	0.60298831	214	O60678	PRMT3	Protein arginine N-methyltransferase 3	yes	yes	0	0	0	4	0				1													12.441	12.441	2	0.003397	5239	DP690-4	98.044	72.485			0.64629	0.7058	NaN	1	0	Median	18631000	10981000	7650500	16235	214	15168	32053	77517;77518;77519	77519		3	9606
VVGAMQLYSVDR	0	1	Oxidation (M)	1352.6758	0.67583567	1075	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	1	0	7.33	3.77		1								2							15.091	15.091	2	0.0028157	7863	DP690-2	98.048	65.634			1.8849	1.9714	NaN	1	0	Median	8506200	3096600	5409700	16236	1075	15169	32054;32055;32056	77520;77521;77522;77523	77523	1682	4	9606
VVGAVIDQGLITR	0	1	Unmodified	1339.7823	0.78234966	60	E9PRG8	C11orf98	Uncharacterized protein C11orf98	yes	yes	0	0	0	16	0																1	17.295	17.295	2	0.0021825	11497	DP690-16	113.69	71.686			0.8329	0.9687	NaN	1	0	Median	11739000	7122500	4616200	16237	60	15170	32057	77524	77524		1	9606
VVGAYNQCPVVR	0	1	Unmodified	1360.6922	0.69215444	1646	Q8N2G8	GHDC	GH3 domain-containing protein	yes	yes	0	0	0	6	3.46				3								1					13.258	13.258	2	0.0023546	6227	DP690-4	155.75	101.98			0.79291	0.9652	NaN	1	0	Median	11237000	5540500	5696000	16238	1646	15171	32058;32059;32060;32061	77525;77526;77527;77528	77526		4	9606
VVGCSCVVVK	1	0	Unmodified	1105.5624	0.56238582	582	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	16	0																1	12.225	12.225	2	0.023937	5000	DP690-16	97.635	63.838			NaN	NaN	NaN	0	0	Median	26523000	0	26523000	16239	582	15172	32062	77529;77530	77530		2	9606
VVGDVAYDEAK	1	0	Unmodified	1164.5663	0.56626845	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7	4			1								1						13.111	13.111	2	0.0032193	6569	DP690-11	91.658	60.972			1.0595	1.1879	26.036	2	0	Median	147560000	72566000	74996000	16240	470	15173	32063;32064	77531;77532;77533;77534;77535;77536;77537	77531		7	9606
VVGDVAYDEAKER	1	1	Unmodified	1449.71	0.70997257	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	9.4	3.2			1								4						12.402	12.402	2;3	0.00027163	5167	DP690-3	106.79	74.626			0.86287	0.95699	NaN	1	0	Median	31849000	16819000	15029000	16241	470	15174	32065;32066;32067;32068;32069	77538;77539;77540;77541;77542;77543	77542		6	9606
VVGGFDVLTAMENVESDPK	1	0	Oxidation (M)	2021.9616	0.96157217	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	1	0	12	0												1					18.864	18.864	2	1.7204E-10	14258	DP690-12	161.21	143.48			0.92583	1.1129	NaN	1	0	Median	21372000	11535000	9837100	16242	1200	15175	32070	77544;77545;77546;77547;77548;77549	77544	1855	6	9606
VVGGFDVLTAMENVESDPK	1	0	Unmodified	2005.9667	0.96665755	1200	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	12	0												1					22.459	22.459	2	0.00023777	18836	DP690-12	118.33	95.243			0.67656	0.82069	NaN	1	0	Median	5017900	3021300	1996700	16243	1200	15175	32071	77550;77551	77550		2	9606
VVGIHMQGLGCDEMLQGFAVAVK	1	0	2 Oxidation (M)	2490.2069	0.20692137	353	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	2	0	4	0				1													17.612	17.612	3	2.3696E-15	11852	DP690-4	162.42	137.87			0.83303	0.89624	NaN	1	0	Median	36812000	21243000	15569000	16244	353	15176	32072	77552;77553;77554;77555;77556	77553	363;364	5	9606
VVGKDYLLCDYNR	1	1	Unmodified	1613.7872	0.78717704	769	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	1	14.5	0.5														1	1		15.104	15.104	3	0.0049127	8947	DP690-15	57.267	23.651			0.86674	1.0264	3.2591	2	0	Median	103900000	58664000	45237000	16245	769	15177	32073;32074	77557;77558;77559	77559		3	9606
VVGKPAQLGTQR	1	1	Unmodified	1252.7252	0.72516913	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	1	10	0										1							10.449	10.449	3	0.026386	2868	DP690-10	57.175	57.175			0.79006	0.90778	NaN	1	0	Median	297380000	169250000	128120000	16246	2065	15178	32075	77560	77560		1	9606
VVGPQQLHSETNER	0	1	Unmodified	1592.7907	0.79068251	1991	Q9BSF4	C19orf52	Uncharacterized protein C19orf52	yes	yes	0	0	0	13	2.83									1						2		11.12	11.12	2;3	1.0602E-05	3627	DP690-15	166.45	166.45			0.72491	0.80671	5.9321	3	0	Plateau	158810000	92116000	66691000	16247	1991	15179	32076;32077;32078	77561;77562;77563;77564;77565;77566;77567;77568;77569;77570;77571	77568		11	9606
VVGQTTPESFEK	1	0	Unmodified	1320.6561	0.65614609	1100	Q02952	AKAP12	A-kinase anchor protein 12	yes	yes	0	0	0	2	0		1															13.301	13.301	2	0.018264	5756	DP690-2	72.096	72.096			0.97539	0.97457	NaN	1	0	Median	4085200	1975000	2110200	16248	1100	15180	32079	77572	77572		1	9606
VVGSEFVQK	1	0	Unmodified	991.53385	0.53384611	743	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	5	0					1												13.154	13.154	2	0.0012038	5830	DP690-5	123.69	75.947			1.3631	1.362	NaN	1	0	Median	26367000	10243000	16124000	16249	743	15181	32080	77573;77574;77575	77575		3	9606
VVGSVGQHTGEPVEELALSHCGR	0	1	Unmodified	2417.1758	0.17575589	2128	Q9H6Y2	WDR55	WD repeat-containing protein 55	yes	yes	0	0	0	13.5	0.5													1	1			14.646	14.646	4	0.00022673	8282	DP690-13	98.76	98.76			0.76759	0.89582	14.768	2	0	Median	355510000	216950000	138560000	16250	2128	15182	32081;32082	77576;77577;77578;77579;77580	77579		5	9606
VVHIMDFQR	0	1	Oxidation (M)	1159.5808	0.58081308	735	P43243	MATR3	Matrin-3	yes	yes	0	1	0	11	0											1						12.948	12.948	3	0.053046	6345	DP690-11	53.089	23.422			0.7278	0.87963	NaN	1	0	Median	22144000	13500000	8644100	16251	735	15183	32083	77581;77582;77583	77582		3	9606
VVHIMDFQR	0	1	Unmodified	1143.5859	0.58589846	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	11	0											1						14.817	14.817	3	6.7375E-05	9090	DP690-11	145.16	124.85			0.91062	1.0862	NaN	1	0	Median	38394000	17359000	21035000	16252	735	15183	32084	77584;77585;77586;77587	77584		4	9606
VVHLSLRPIFLQPGR	0	2	Unmodified	1731.0308	0.030793624	1286	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	1	10	0										1							17.287	17.287	4	0.053578	12870	DP690-10	64.104	33.928			NaN	NaN	NaN	0	0	Median	14367000	14367000	0	16253	1286	15184	32085	77588	77588		1	9606
VVIFQQEQENK	1	0	Unmodified	1360.6987	0.69867961	1015	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	0	0	7	3.54				1	1	1							1				14.214	14.214	2	9.6746E-25	7473	DP690-4	226.46	171.37			1.6378	1.628	32.969	3	0	Median	250560000	90266000	160300000	16254	1015	15185	32086;32087;32088;32089	77589;77590;77591;77592;77593;77594;77595;77596;77597;77598;77599;77600;77601	77590		13	9606
VVINVPIFK	1	0	Unmodified	1027.643	0.64300263	776	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	4	0				1													19.209	19.209	2	0.021779	13825	DP690-4	77.674	59.35			0.70507	0.76779	NaN	1	0	Median	10456000	6297700	4158800	16255	776	15186	32090	77602;77603	77602		2	9606
VVIQPDIYPGNCWAFK	1	0	Unmodified	1905.9447	0.94474031	295	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	9	0									1								20.249	20.249	2	0.023446	15173	DP690-9	90.685	65.389			NaN	NaN	NaN	0	0	Median	1643800	0	1643800	16256	295	15187	32091	77604	77604		1	9606
VVIQSNDDIASR	0	1	Unmodified	1315.6732	0.67319314	1803	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	2.5	0.5		1	1														13.119	13.119	2	5.4162E-08	5562	DP690-2	207.34	151.66			1.36	1.4209	NaN	1	0	Median	23854000	5215400	18639000	16257	1803	15188	32092;32093	77605;77606;77607;77608;77609	77607		5	9606
VVIVDPETGKEMSVYEAYR	1	1	Oxidation (M)	2200.0722	0.07218525	1319	Q15149	PLEC	Plectin	yes	yes	0	1	1	10	0.816									1	1	1						16.354	16.354	3	7.5662E-05	10249	DP690-9	110.26	89.635			0.80927	0.79912	12.316	3	0	Plateau	196520000	112530000	83988000	16258	1319	15189	32094;32095;32096	77610;77611;77612;77613;77614;77615;77616	77615	2037	7	9606
VVIVDPETGKEMSVYEAYR	1	1	Unmodified	2184.0773	0.077270628	1319	Q15149	PLEC	Plectin	yes	yes	0	0	1	9.5	0.5									1	1							17.746	17.746	3	5.8682E-10	13540	DP690-10	149.86	118.75			0.77007	0.90509	0.57955	2	0	Median	194670000	103910000	90760000	16259	1319	15189	32097;32098	77617;77618;77619;77620;77621;77622;77623	77618		7	9606
VVIVDPETGKEMSVYEAYRK	2	1	Unmodified	2312.1722	0.17223365	1319	Q15149	PLEC	Plectin	yes	yes	0	0	2	10	0										1							16.285	16.285	4	0.00042113	11409	DP690-10	101.92	78.124			0.68543	0.78215	NaN	1	0	Median	132300000	68972000	63330000	16260	1319	15190	32099	77624	77624		1	9606
VVIVDPETGKEMSVYEAYRK	2	1	Oxidation (M)	2328.1671	0.16714827	1319	Q15149	PLEC	Plectin	yes	yes	0	1	2	9	0									1								14.949	14.949	4	0.053666	8382	DP690-9	53.779	53.779			0.78669	0.84173	NaN	1	0	Median	24172000	13861000	10311000	16261	1319	15190	32100	77625	77625	2037	0	9606
VVKELEDLQK	2	0	Unmodified	1199.6762	0.67615325	120	O14933	UBE2L6	Ubiquitin/ISG15-conjugating enzyme E2 L6	yes	yes	0	0	1	8	0								2									13.212	13.212	2;3	0.00093716	6073	DP690-8	94.309	80.374			1.6411	1.9066	121.75	2	0	Median	17531000	6354800	11177000	16262	120	15191	32101;32102	77626;77627;77628;77629;77630;77631	77628		6	9606
VVKLLGVIIEEGK	2	0	Unmodified	1395.8701	0.87010203	1221	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	1	10	0										1							24.022	24.022	3	0.066208	21956	DP690-10	37.525	30.155			0.89108	1.0508	NaN	1	0	Median	13216000	7135200	6080500	16263	1221	15192	32103	77632	77632		1	9606
VVLAEVIQAFSAPENAVR	0	1	Unmodified	1912.0418	0.04181182	1947	Q99622	C12orf57	Protein C10	yes	yes	0	0	0	16	0																1	23.345	23.345	2	4.1486E-11	18305	DP690-16	168.76	139.22			0.68714	0.8035	NaN	1	0	Median	2218200	1338200	879940	16264	1947	15193	32104	77633;77634;77635;77636;77637;77638;77639;77640	77637		8	9606
VVLASQPDLECGFSR	0	1	Unmodified	1676.8192	0.81920545	2304	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	11	0											1						17.349	17.349	2	0.0020535	12807	DP690-11	95.018	95.018			0.74066	0.88373	NaN	1	0	Median	44476000	26756000	17721000	16265	2304	15194	32105	77641;77642	77641		2	9606
VVLAYEPVWAIGTGK	1	0	Unmodified	1601.8817	0.88172935	919	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	7	0							1										20.618	20.618	2	0.0010975	15394	DP690-7	96.103	71.248			1.2063	1.3189	NaN	1	0	Median	13441000	5837500	7603300	16266	919	15195	32106	77643;77644;77645	77644		3	9606
VVLDVGSGTGILCMFAAK	1	0	Oxidation (M)	1852.9427	0.9426914	1962	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	1	0	6	0						1											20.952	20.952	2	0.00034626	15119	DP690-6	113.07	37.981			2.4422	2.6978	NaN	1	0	Median	2521300	766650	1754700	16267	1962	15196	32107	77646;77647	77646	2507	2	9606
VVLEGPAPWGFR	0	1	Unmodified	1326.7085	0.70845643	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	13	0													1				19.395	19.395	2	0.00066117	14707	DP690-13	108.98	88.691			0.71937	0.87288	NaN	1	0	Median	54836000	30687000	24149000	16268	2194	15197	32108	77648;77649	77649		2	9606
VVLEHEEVR	0	1	Unmodified	1108.5877	0.58767259	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	5.67	3.77			2								1						10.87	10.87	2;3	3.3122E-10	3233	DP690-3	183.26	132.19			0.67816	0.82197	NaN	1	0	Median	29776000	2621000	27155000	16269	2515	15198	32109;32110;32111	77650;77651;77652;77653;77654	77653		5	9606
VVLHDGDPNEPVSDYINANIIMPEFETK	1	0	Oxidation (M)	3171.507	0.5070456	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	1	0	4	0				1													20.331	20.331	3	4.3753E-05	15141	DP690-4	85.595	76.567			0.66274	0.70817	NaN	1	0	Median	2365600	1644800	720860	16270	1120	15199	32112	77655;77656	77655	1739	2	9606
VVLIGGKPDR	1	1	Unmodified	1052.6342	0.63422886	959	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	10	4.32				2								2		2			11.376	11.376	2;3	0.00012533	4371	DP690-12	145.46	102.02			0.7542	0.94524	9.9417	5	0	Median	356010000	196030000	159980000	16271	959	15200	32113;32114;32115;32116;32117;32118	77657;77658;77659;77660;77661;77662;77663;77664;77665;77666;77667;77668;77669;77670;77671;77672;77673;77674;77675	77662		19	9606
VVLLGAPNAGK	1	0	Unmodified	1037.6233	0.62332982	268	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	14	0														1			14.574	14.574	2	0.023216	8370	DP690-14	71.501	51.724			0.71671	0.84968	NaN	1	0	Median	145880000	83848000	62028000	16272	268	15201	32119	77676	77676		1	9606
VVLLGMDILSALVTR	0	1	Oxidation (M)	1614.9379	0.93786402	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	1	0	10.5	0.5										1	1						24.21	24.21	2	2.4735E-05	22140	DP690-10	132.59	103.63			0.93746	1.17	NaN	1	0	Median	19040000	10113000	8926900	16273	1546	15202	32120;32121	77677;77678;77679;77680;77681	77678	2222	5	9606
VVLLGMDILSALVTR	0	1	Unmodified	1598.9429	0.9429494	1546	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	10	0										3							26.462	26.462	2	0.00022745	24677	DP690-10	116.24	116.24			0.84227	0.98702	20.57	2	0	Median	3480500	2043800	1436700	16274	1546	15202	32122;32123;32124	77682;77683;77684;77685;77686;77687	77683		6	9606
VVLLLGLLNEDDACHASFLR	0	1	Unmodified	2254.178	0.17798773	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								22.47	22.47	3	4.5844E-05	17705	DP690-9	113.14	97.739			0.75258	0.9381	NaN	1	0	Median	3369500	1932100	1437400	16275	1453	15203	32125	77688;77689;77690;77691	77688		4	9606
VVLLTEVDK	1	0	Unmodified	1014.5961	0.59611202	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	14	0														1			16.005	16.005	2	0.020944	10311	DP690-14	78.516	50.634			0.6382	0.77117	NaN	1	0	Median	29828000	19331000	10497000	16276	712	15204	32126	77692	77692		1	9606
VVLLTEVDKLTK	2	0	Unmodified	1356.8228	0.82281749	712	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	1	14	0														1			17.372	17.372	3	4.917E-05	12148	DP690-14	140.78	126.52			0.92786	1.0358	NaN	1	0	Median	175540000	84886000	90649000	16277	712	15205	32127	77693;77694;77695;77696	77695		4	9606
VVLNMNLTPTQGSYTFDPVTK	1	0	Oxidation (M)	2340.1671	0.16714827	2447	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	1	0	13	0													1				18.608	18.608	2	0.044211	13666	DP690-13	75.02	44.537			NaN	NaN	NaN	0	0	Median	8880100	0	8880100	16278	2447	15206	32128	77697	77697		1	9606
VVLPCSVQEYQVGQLYSVAEASK	1	0	Unmodified	2553.2785	0.27848963	784	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	6	0						1											20.508	20.508	2	0.0011109	14699	DP690-6	90.754	74.224			0.9981	1.0975	NaN	1	0	Median	2203900	1212900	990920	16279	784	15207	32129	77698	77698		1	9606
VVLPIEAPIR	0	1	Unmodified	1105.6859	0.68593008	354	P00403	MT-CO2	Cytochrome c oxidase subunit 2	yes	yes	0	0	0	16	0																1	18.164	18.164	2	0.0033812	12503	DP690-16	93.143	93.143			0.62586	0.71847	NaN	1	0	Median	31599000	19321000	12277000	16280	354	15208	32130	77699;77700;77701;77702	77702		4	9606
VVLPTFILEK	1	0	Unmodified	1157.706	0.70599682	2037	Q9BXB5;Q9BXB4	OSBPL10;OSBPL11	Oxysterol-binding protein-related protein 10;Oxysterol-binding protein-related protein 11	yes	no	0	0	0	7	4			1								1						20.561	20.561	2	0.00060325	17302	DP690-11	115.7	104.6			0.66326	0.74873	14.177	2	0	Median	90089000	54079000	36010000	16281	2037	15209	32131;32132	77703;77704;77705;77706;77707;77708;77709;77710	77703		8	9606
VVLPTLASLR	0	1	Unmodified	1067.6703	0.67028001	1091	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	yes	yes	0	0	0	10	0										1							19.184	19.184	2	0.0095843	15613	DP690-10	109.48	53.357			NaN	NaN	NaN	0	0	Median	19725000	19725000	0	16282	1091	15210	32133	77711	77711		1	9606
VVLPYLVPK	1	0	Unmodified	1026.6478	0.64775366	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	6	4		1								1							18.477	18.477	2	0.0064361	14501	DP690-10	94.006	66.235			1.0035	1.1119	27.724	2	0	Median	123680000	70411000	53267000	16283	1782	15211	32134;32135	77712;77713;77714;77715;77716	77712		5	9606
VVLQPQAGSSQGASSGLSVVK	1	0	Unmodified	1998.0746	0.074568512	2168	Q9HCK8	CHD8	Chromodomain-helicase-DNA-binding protein 8	yes	yes	0	0	0	10	0										1							15.561	15.561	2	0.003168	10339	DP690-10	115.1	78.684			NaN	NaN	NaN	0	0	Median	0	0	0	16284	2168	15212	32136	77717	77717		1	9606
VVLSVSSGGQHTVLLVK	1	0	Unmodified	1722.004	0.003969751	531	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	13	0													1				16.026	16.026	3	0.00039293	10189	DP690-13	126.07	116.65			0.98614	1.139	NaN	1	0	Median	69032000	32204000	36828000	16285	531	15213	32137	77718;77719	77719		2	9606
VVLTAGPAQFGLDLSK	1	0	Unmodified	1614.8981	0.8981077	2061	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	0	0	3	0			1														20.191	20.191	2	0.0015812	15691	DP690-3	131.06	84.467			NaN	NaN	NaN	0	0	Median	16158000	0	16158000	16286	2061	15214	32138	77720;77721	77720		2	9606
VVMALGDYMGASCHACIGGTNVR	0	1	2 Oxidation (M)	2470.0862	0.086154305	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	2	0	13	0													1				14.762	14.762	3	0.0001255	8425	DP690-13	109.83	109.83			1.0447	1.2435	NaN	1	0	Median	105460000	49789000	55670000	16287	927	15215	32139	77722;77723;77724;77725	77723	1438;1439	4	9606
VVMALGDYMGASCHACIGGTNVR	0	1	Oxidation (M)	2454.0912	0.091239683	927	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	1	0	13	0													2				16.18	16.18	3	4.4001E-07	10149	DP690-13	141.31	122.27			1.0728	1.3008	3.0949	2	0	Median	113910000	54858000	59047000	16288	927	15215	32140;32141	77726;77727;77728;77729	77727	1438;1439	4	9606
VVNEINIEDLCLTK	1	0	Unmodified	1658.8549	0.85492225	1659	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	0	0	0	16	0																1	19.635	19.635	2	3.6347E-09	14214	DP690-16	202.31	149.18			0.79531	0.92333	NaN	1	0	Median	26757000	14822000	11935000	16289	1659	15216	32142	77730;77731;77732;77733	77731		4	9606
VVNIVPVIAK	1	0	Unmodified	1050.6801	0.68011642	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	12	0												2					17.079	17.079	2	0.015664	12116	DP690-12	75.738	69.817			0.61351	0.72537	NaN	1	0	Median	81689000	46798000	34891000	16290	2344	15217	32143;32144	77734;77735	77734		2	9606
VVNMNQQSDTADLLGGYKPVDHK	2	0	Oxidation (M)	2544.2279	0.22785104	2217	Q9NU22	MDN1	Midasin	yes	yes	0	1	1	9	0									1								14.485	14.485	4	0.0013889	7804	DP690-9	97.589	65.813			NaN	NaN	NaN	0	0	Median	7887300	7887300	0	16291	2217	15218	32145	77736;77737	77736	2701	2	9606
VVPCLVTPVTGR	0	1	Unmodified	1296.7224	0.72239194	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							16.483	16.483	2	0.0036842	11732	DP690-10	89.029	44.652			0.98041	1.1645	NaN	1	0	Median	229340000	128500000	100830000	16292	250	15219	32146	77738;77739;77740	77738		3	9606
VVPENLGLQEGTHELCYNTACALIGQGQLNQAMK	1	0	Unmodified	3755.8069	0.80694956	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11	0											1						20.094	20.094	3	3.8339E-08	16776	DP690-11	97.304	89.188			0.54307	0.66223	NaN	1	0	Median	30016000	17479000	12537000	16293	288	15220	32147	77741;77742;77743	77742		3	9606
VVPLADIITPNQFEAELLSGR	0	1	Unmodified	2281.2318	0.23179744	101	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	6	0						2											24.411	24.411	2	0.01635	18861	DP690-6	88.282	64.091			NaN	NaN	NaN	0	0	Median	802340	802340	0	16294	101	15221	32148;32149	77744;77745	77745		2	9606
VVPTTDHIDTEK	1	0	Unmodified	1353.6776	0.67760981	270	O75663	TIPRL	TIP41-like protein	yes	yes	0	0	0	7	0							1										10.826	10.826	3	0.00056764	3341	DP690-7	98.407	71.995			0.9247	0.99406	NaN	1	0	Median	48597000	23721000	24876000	16295	270	15222	32150	77746;77747;77748	77746		3	9606
VVQGLFDNFLR	0	1	Unmodified	1306.7034	0.70337105	1744	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	11	0											1						21.153	21.153	2	0.0027585	18141	DP690-11	131.44	92.418			NaN	NaN	NaN	0	0	Median	6712100	6712100	0	16296	1744	15223	32151	77749;77750	77750		2	9606
VVQLHEYSEELEK	1	0	Unmodified	1601.7937	0.7937022	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	10	0										1							14.393	14.393	3	0.0056786	8613	DP690-10	113.95	82.731			NaN	NaN	NaN	0	0	Median	164250000	164250000	0	16297	1285	15224	32152	77751	77751		1	9606
VVQMLGSLGGQINK	1	0	Oxidation (M)	1458.7864	0.78644876	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	8.5	2.5		1							4	3							15.036	15.036	2	5.871E-06	8430	DP690-9	183.85	143.79			0.78202	0.89342	7.3454	3	0	Plateau	438860000	274220000	164640000	16298	1046	15225	32153;32154;32155;32156;32157;32158;32159;32160	77752;77753;77754;77755;77756;77757;77758;77759;77760;77761;77762;77763;77764;77765;77766;77767;77768;77769	77763	1645	18	9606
VVQMLGSLGGQINK	1	0	Unmodified	1442.7915	0.79153413	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							17.348	17.348	2	4.9197E-14	12923	DP690-10	222.18	185.87			0.79593	0.93951	1.2935	2	0	Median	281340000	158560000	122770000	16299	1046	15225	32161;32162	77770;77771;77772;77773;77774;77775;77776;77777	77773		8	9606
VVQNDAYTAPALPSSIR	0	1	Unmodified	1800.937	0.9370124	2045	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	13	0													1				16.723	16.723	2	9.2243E-18	11057	DP690-13	219.74	190.4			0.74754	0.85662	NaN	1	0	Median	217290000	122370000	94926000	16300	2045	15226	32163	77778;77779	77778		2	9606
VVQSLEQTAR	0	1	Unmodified	1129.6091	0.60913632	1340	Q15631	TSN	Translin	yes	yes	0	0	0	11	4							1								1		11.563	11.563	2	5.2532E-05	4212	DP690-15	158.87	115.07			0.82391	0.93175	4.7009	2	0	Median	80739000	43228000	37511000	16301	1340	15227	32164;32165	77780;77781;77782;77783;77784;77785;77786;77787	77781		8	9606
VVQVFSEYFK	1	0	Unmodified	1244.6441	0.64412484	2040	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	13	0													1				19.147	19.147	2	0.0012449	14392	DP690-13	107.15	68.378			0.95496	1.1045	NaN	1	0	Median	53854000	28209000	25645000	16302	2040	15228	32166	77788	77788		1	9606
VVQVSAGDSHTAALTDDGR	0	1	Unmodified	1897.913	0.91298249	531	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	9	4					1								1				12.997	12.997	3	2.8282E-10	5946	DP690-13	171.29	157.88			0.57916	0.65772	NaN	1	0	Median	269280000	146360000	122920000	16303	531	15229	32167;32168	77789;77790;77791;77792;77793	77791		5	9606
VVSAGTYPVLIQGETSVGK	1	0	Unmodified	1904.0255	0.025493054	2217	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	9	0									1								17.768	17.768	2	0.00090047	12183	DP690-9	91.307	76.407			0.80083	1.0119	NaN	1	0	Median	6784900	3516400	3268600	16304	2217	15230	32169	77794;77795	77795		2	9606
VVSDREEPEAAYR	0	2	Unmodified	1519.7267	0.72668527	1505	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	1	14	0														1			10.934	10.934	3	0.00076584	3413	DP690-14	98.407	73.554			0.98799	1.1611	NaN	1	0	Median	33504000	18223000	15281000	16305	1505	15231	32170	77796;77797	77797		2	9606
VVSGMVNCNDDQGVLLGR	0	1	Oxidation (M)	1947.9142	0.91424482	556	P21980	TGM2	Protein-glutamine gamma-glutamyltransferase 2	yes	yes	0	1	0	3	0			1														15.619	15.619	2	2.7932E-09	9572	DP690-3	148.62	126.08			1.5241	1.716	NaN	1	0	Median	8633000	3706700	4926300	16306	556	15232	32171	77798;77799;77800	77800	718	3	9606
VVSNTIEPLTLFHK	1	0	Unmodified	1596.8875	0.88754301	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9.5	0.5									1	1							18.144	18.144	3	5.2369E-05	12602	DP690-9	119.87	119.87			0.74225	0.91458	6.2835	2	0	Median	89213000	49066000	40147000	16307	1048	15233	32172;32173	77801;77802;77803;77804;77805;77806	77803		6	9606
VVSQYHELVVQAR	0	1	Unmodified	1526.8205	0.82052608	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	11	0											1						13.555	13.555	2	8.6805E-05	7252	DP690-11	157.68	157.68			0.84229	1.0058	NaN	1	0	Median	46496000	24218000	22278000	16308	1375	15234	32174	77807;77808;77809;77810	77809		4	9606
VVSQYSSLLSPMSVNAVMK	1	0	2 Oxidation (M)	2071.033	0.032962972	827	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	2	0	4	0				1													17.745	17.745	2	3.9503E-06	12017	DP690-4	133.48	117.68			3.8497	4.1856	NaN	1	0	Median	9890600	3123400	6767200	16309	827	15235	32175	77811;77812	77812	1253;1254	2	9606
VVSSLQQEIWEEEDLNRK	1	1	Unmodified	2201.0964	0.096426166	781	P48681	NES	Nestin	yes	yes	0	0	1	10.5	0.5										1	1						17.408	17.408	3	7.4765E-12	12954	DP690-10	172.57	136.9			0.79214	0.9309	NaN	1	0	Median	253460000	111750000	141700000	16310	781	15236	32176;32177	77813;77814;77815	77813		3	9606
VVSSVLQFGNISFK	1	0	Unmodified	1523.8348	0.83477916	669	P35580	MYH10	Myosin-10	yes	yes	0	0	0	2	0		1															20.655	20.655	2	0.067232	14309	DP690-2	55.721	39.628			NaN	NaN	NaN	0	0	Median	1213900	484200	729720	16311	669	15237	32178	77816	77816		1	9606
VVTCEVDAQPPELGR	0	1	Unmodified	1668.8141	0.81412007	1578	Q86VU5	COMTD1	Catechol O-methyltransferase domain-containing protein 1	yes	yes	0	0	0	15	0															1		15.298	15.298	2	2.4287E-05	9153	DP690-15	162.68	123.06			0.67923	0.78679	NaN	1	0	Median	16362000	9462100	6900100	16312	1578	15238	32179	77817;77818;77819;77820;77821	77821		5	9606
VVTDLISLIR	0	1	Unmodified	1127.6914	0.69140938	693	P38432	COIL	Coilin	yes	yes	0	0	0	12	0												1					21.287	21.287	2	0.0033759	17493	DP690-12	93.178	55.629			0.85744	1.0495	NaN	1	0	Median	4717200	2497900	2219300	16313	693	15239	32180	77822;77823;77824	77823		3	9606
VVTDTDETELAR	0	1	Unmodified	1347.6518	0.65178899	382	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	10	4						1								1			13.387	13.387	2	9.5075E-07	6602	DP690-14	160.75	125.31			1.1314	1.2789	NaN	1	0	Median	82284000	70964000	11320000	16314	382	15240	32181;32182	77825;77826;77827;77828;77829	77825		5	9606
VVTLAQHISEVITQDYTR	0	1	Unmodified	2072.0902	0.090218576	2512	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	0	0	0	10	0										1							20.264	20.264	3	0.020026	17003	DP690-10	58.024	28.64			NaN	NaN	NaN	0	0	Median	20673000	20673000	0	16315	2512	15241	32183	77830	77830		1	9606
VVTLQGQIIEQSGTMTGGGSK	1	0	Oxidation (M)	2106.0627	0.062683196	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	1	0	5.33	3.3			2							1							15.823	15.823	2	4.1167E-11	10717	DP690-10	166.62	96.757			NaN	NaN	NaN	0	0	Median	26831000	23212000	3618400	16316	2215	15242	32184;32185;32186	77831;77832;77833;77834	77831	2692	4	9606
VVTLQGQIIEQSGTMTGGGSK	1	0	Unmodified	2090.0678	0.067768574	2215	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	10	0										1							17.445	17.445	2	0.0081803	13043	DP690-10	102.72	63.057			NaN	NaN	NaN	0	0	Median	0	0	0	16317	2215	15242	32187	77835	77835		1	9606
VVTNYNSAHDQNSNLLIEYFR	0	1	Unmodified	2496.2034	0.20335085	556	P21980	TGM2	Protein-glutamine gamma-glutamyltransferase 2	yes	yes	0	0	0	3	0			1														19.063	19.063	3	2.4223E-05	13874	DP690-3	121.48	104.41			2.8447	3.2378	NaN	1	0	Median	25973000	7585400	18388000	16318	556	15243	32188	77836;77837;77838;77839	77836		4	9606
VVTQNICQYR	0	1	Unmodified	1279.6343	0.63430521	1641	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	3	0			2														13.31	13.31	2	0.047869	6390	DP690-3	89.296	58.726			NaN	NaN	NaN	0	0	Median	0	0	0	16319	1641	15244	32189;32190	77840;77841	77841		2	9606
VVTSEALCGVPVLVLANK	1	0	Unmodified	1868.0441	0.044120006	1235	Q13795	ARFRP1	ADP-ribosylation factor-related protein 1	yes	yes	0	0	0	15	0															1		20.833	20.833	2	0.0010547	16142	DP690-15	90.614	75.835			0.83953	0.95212	NaN	1	0	Median	1692300	926230	766060	16320	1235	15245	32191	77842	77842		1	9606
VVTSEDQVQEGTK	1	0	Unmodified	1418.6889	0.68890278	1754	Q8WWK9	CKAP2	Cytoskeleton-associated protein 2	yes	yes	0	0	0	11	0											1						10.865	10.865	2	9.5681E-09	3411	DP690-11	218.49	173.85			0.82204	1.0019	NaN	1	0	Median	32168000	18369000	13798000	16321	1754	15246	32192	77843;77844;77845	77844		3	9606
VVVDGSGQCHSTDTVK	1	0	Unmodified	1687.7835	0.78354822	2156	Q9HAU4	SMURF2	E3 ubiquitin-protein ligase SMURF2	yes	yes	0	0	0	7	4			1								1						10.456	10.456	3	0.00018531	2800	DP690-11	110.12	84.795			1.1254	1.2303	6.6957	2	0	Median	272660000	126440000	146210000	16322	2156	15247	32193;32194	77846;77847;77848;77849;77850;77851	77847		6	9606
VVVDVLR	0	1	Unmodified	798.49634	0.49633839	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	4	0				1													15.06	15.06	2	0.076195	8508	DP690-4	97.071	26.158			NaN	NaN	NaN	0	0	Median	280780000	0	280780000	16323	1784	15248	32195	77852;77853	77852		2	9606
VVVFIKPTCPYCR	1	1	Unmodified	1637.8422	0.8421895	675	P35754	GLRX	Glutaredoxin-1	yes	yes	0	0	1	8	0								1									15.263	15.263	3	0.016785	8412	DP690-8	60.301	41.965			0.73088	0.84981	NaN	1	0	Median	4568000	2546600	2021300	16324	675	15249	32196	77854	77854		1	9606
VVVHPLVLLSVVDHFNR	0	1	Unmodified	1942.1153	0.11525153	839	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	6	0						1											20.352	20.352	4	1.2345E-08	14440	DP690-6	175.29	175.29			1.2646	1.4384	NaN	1	0	Median	4661400	2018900	2642500	16325	839	15250	32197	77855;77856;77857;77858	77856		4	9606
VVVLGSGGVGK	1	0	Unmodified	970.58113	0.58113065	945;2476	Q9Y3L5;P10114;P61225	RAP2C;RAP2A;RAP2B	Ras-related protein Rap-2c;Ras-related protein Rap-2a;Ras-related protein Rap-2b	no	no	0	0	0	16	0																1	13.437	13.437	2	0.036083	6439	DP690-16	66.962	19.305			0.69293	0.77576	NaN	1	0	Median	62919000	37911000	25007000	16326	2476;945	15251	32198	77859	77859		1	9606
VVVLMGSTSDLGHCEK	1	0	Oxidation (M)	1746.8281	0.82805557	560	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	1	0	5	0					1												13.371	13.371	3	0.00027602	6046	DP690-5	102.15	89.999			1.3142	1.31	NaN	1	0	Median	60787000	23068000	37719000	16327	560	15252	32199	77860;77861;77862	77860	733	3	9606
VVVQVLAEEPEAVLK	1	0	Unmodified	1621.9291	0.92907347	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2.5	0.5		1	1														19.375	19.375	2	1.7419E-14	12773	DP690-2	220.5	202.16			0.73875	0.76867	14.506	2	0	Median	85415000	49867000	35548000	16328	789	15253	32200;32201	77863;77864;77865;77866;77867;77868	77864		6	9606
VVVTVEQTEEELER	0	1	Unmodified	1658.8363	0.8362953	148	O15269	SPTLC1	Serine palmitoyltransferase 1	yes	yes	0	0	0	13	0													1				17.591	17.591	2	7.0117E-05	12273	DP690-13	183	143.85			0.61572	0.75458	NaN	1	0	Median	12912000	7501200	5411000	16329	148	15254	32202	77869;77870	77869		2	9606
VVVVDSRPWLEGR	0	2	Unmodified	1510.8256	0.82561145	2350	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	1	12	0												1					16.188	16.188	3	0.00075513	10729	DP690-12	92.866	58.098			0.97482	1.1053	NaN	1	0	Median	47465000	23599000	23866000	16330	2350	15255	32203	77871;77872;77873	77873		3	9606
VVVVGDQSAGK	1	0	Unmodified	1057.5768	0.57677356	203	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	3	0			1														11.031	11.031	2	8.0779E-05	3471	DP690-3	128.86	79.435			0.85923	0.91052	NaN	1	0	Median	33428000	17442000	15986000	16331	203	15256	32204	77874;77875;77876;77877	77877		4	9606
VVVVQAISALCQK	1	0	Unmodified	1413.8014	0.80137054	2515	Q9Y678	COPG1	Coatomer subunit gamma-1	no	no	0	0	0	3	0			1														18.256	18.256	2	0.020529	12930	DP690-3	96.342	59.895			NaN	NaN	NaN	0	0	Median	0	0	0	16332	2515	15257	32205	77878	77878		1	9606
VVVYSNTIQSIIAIIR	0	1	Unmodified	1788.0509	0.050919944	426	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	9	0									1								24.217	24.217	2	0.069419	19691	DP690-9	103.46	103.46			0.5796	0.66713	NaN	1	0	Median	857980	544020	313960	16333	426	15258	32206	77879	77879		0	9606
VVWVEESDKR	1	1	Unmodified	1245.6354	0.63535107	96	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	1	11.2	0.433											3	1					12.636	12.636	2;3	0.0017543	5592	DP690-12	89.029	65.656			0.98845	1.077	15.088	2	0	Median	561270000	290950000	270320000	16334	96	15259	32207;32208;32209;32210	77880;77881;77882;77883;77884;77885;77886;77887;77888;77889	77886		10	9606
VVYENAYGQFIGPHR	0	1	Unmodified	1748.8635	0.86345352	1374	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	4	0				1													15.98	15.98	3	0.012355	9831	DP690-4	67.019	42.489			NaN	NaN	NaN	0	0	Median	0	0	0	16335	1374	15260	32211	77890	77890		1	9606
VVYIFGPPVK	1	0	Unmodified	1117.6536	0.65356732	813	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	3.5	0.5			1	1													18.323	18.323	2	0.0076483	12685	DP690-4	86.953	86.953			0.75679	0.81416	4.9634	2	0	Median	56196000	31339000	24857000	16336	813	15261	32212;32213	77891;77892;77893;77894;77895	77892		5	9606
VVYKNPSEYHYMK	2	0	Oxidation (M)	1672.7919	0.79192806	301	O95059	RPP14	Ribonuclease P protein subunit p14	yes	yes	0	1	1	16	0																1	10.971	10.971	4	0.062079	3527	DP690-16	47.189	47.189			0.70324	0.80695	NaN	1	0	Median	10620000	5921900	4698400	16337	301	15262	32214	77896	77896		0	9606
VWAVLPSSPEACGAASLQER	0	1	Unmodified	2127.0419	0.041888175	1436	Q5T440	IBA57	Putative transferase CAF17, mitochondrial	yes	yes	0	0	0	14	0														1			18.861	18.861	2	0.030506	14118	DP690-14	91.845	49.048			NaN	NaN	NaN	0	0	Median	0	0	0	16338	1436	15263	32215	77897	77897		1	9606
VWDAVSGDELMTLAHK	1	0	Unmodified	1770.8611	0.86107026	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	14	0														1			18.883	18.883	3	1.5045E-07	14148	DP690-14	162.7	121.21			0.91202	1.1048	NaN	1	0	Median	70923000	35672000	35251000	16339	2474	15264	32216	77898;77899;77900;77901;77902	77900		5	9606
VWEAQMWTCER	0	1	Unmodified	1494.6384	0.63840431	2199	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	12	0												1					17.911	17.911	2	0.072801	13072	DP690-12	82.831	55.187			NaN	NaN	NaN	0	0	Median	4155000	4155000	0	16340	2199	15265	32217	77903	77903		1	9606
VWFGDVEAETMYR	0	1	Oxidation (M)	1617.7133	0.71334339	1125	Q06330;Q9UBG7	RBPJ;RBPJL	Recombining binding protein suppressor of hairless;Recombining binding protein suppressor of hairless-like protein	yes	no	0	1	0	12	0												1					19.034	19.034	2	0.080698	14658	DP690-12	58.676	40.938			1.2637	1.5302	NaN	1	0	Median	15145000	8041000	7103600	16341	1125	15266	32218	77904	77904		1	9606
VWLDPNETNEIANANSR	0	1	Unmodified	1941.9181	0.91806787	1063	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	15	0															1		17.654	17.654	2	4.1561E-09	12218	DP690-15	213.84	200.16			0.76475	0.88718	NaN	1	0	Median	19360000	11205000	8155000	16342	1063	15267	32219	77905;77906	77906		2	9606
VWLWTACDFADGER	0	1	Unmodified	1724.7617	0.76169057	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	10	0										1							21.348	21.348	2	0.017261	18557	DP690-10	98.353	50.166			NaN	NaN	NaN	0	0	Median	5602300	0	5602300	16343	808	15268	32220	77907	77907		1	9606
VWQVTIGTR	0	1	Unmodified	1058.5873	0.58727866	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	14	0														1			16.366	16.366	2	0.00035605	10745	DP690-14	157.34	124.73			0.88064	0.99195	NaN	1	0	Median	338560000	180210000	158350000	16344	1022	15269	32221	77908;77909;77910;77911	77910		4	9606
VYAAATEDMDCLTFGSPVLMR	0	1	2 Oxidation (M)	2378.0593	0.059254077	700	P39748	FEN1	Flap endonuclease 1	yes	yes	0	2	0	13	0													1				18.958	18.958	2	0.041897	14092	DP690-13	70.98	42.434			NaN	NaN	NaN	0	0	Median	7898300	7898300	0	16345	700	15270	32222	77912	77912	1025;1026	1	9606
VYAAEPSNADDCYQSK	1	0	Unmodified	1816.7574	0.75739305	2076	Q9GZT4	SRR	Serine racemase	yes	yes	0	0	0	6	0						1											12.645	12.645	2	6.5066E-09	5266	DP690-6	186.76	164.56			0.64548	0.73021	NaN	1	0	Median	5700700	3294200	2406500	16346	2076	15271	32223	77913;77914;77915;77916	77915		4	9606
VYAENAIR	0	1	Unmodified	934.48723	0.48723027	2172	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	yes	yes	0	0	0	7	0							3										11.751	11.751	2	0.00013277	4410	DP690-7	154.09	72.46			NaN	NaN	NaN	0	0	Median	28198000	28198000	0	16347	2172	15272	32224;32225;32226	77917;77918;77919;77920	77918		4	9606
VYAILTHGIFSGPAISR	0	1	Unmodified	1800.9887	0.98865404	929	P60891;P11908;P21108	PRPS1;PRPS2;PRPS1L1	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 3	yes	no	0	0	0	6	0						1											18.792	18.792	3	1.2291E-05	12691	DP690-6	125.5	125.5			1.1203	1.2834	NaN	1	0	Median	6124100	3193500	2930600	16348	929	15273	32227	77921	77921		1	9606
VYALPEDLVEVKPK	2	0	Unmodified	1598.892	0.89195969	484	P13797	PLS3	Plastin-3	yes	yes	0	0	1	4	0				1													17.365	17.365	3	0.00020797	11547	DP690-4	107.53	78.544			0.65481	0.67712	NaN	1	0	Median	15085000	8951100	6133600	16349	484	15274	32228	77922;77923	77922		2	9606
VYASNQEFESVR	0	1	Unmodified	1427.6681	0.66810776	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	2.5	0.5		1	1														14.157	14.157	2	6.8495E-12	7483	DP690-3	191.4	142.42			NaN	NaN	NaN	0	0	Median	17301000	0	17301000	16350	1887	15275	32229;32230	77924;77925;77926;77927	77926		4	9606
VYATILNAGTNTDGFK	1	0	Unmodified	1683.8468	0.84680041	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															17.753	17.753	2	3.0953999999999996E-22	10998	DP690-2	238.92	204.15			0.88283	0.88976	NaN	1	0	Median	12080000	6130800	5948900	16351	789	15276	32231	77928;77929;77930;77931	77931		4	9606
VYATILNAGTNTDGFKEQGVTFPSGDIQEQLIR	1	1	Unmodified	3581.8002	0.80019115	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		1															20.527	20.527	3	5.9415E-08	14089	DP690-2	99.641	89.82			0.77215	0.76011	NaN	1	0	Median	3350700	2011100	1339500	16352	789	15277	32232	77932;77933;77934;77935;77936	77933		5	9606
VYAVATSTNTPCAR	0	1	Unmodified	1509.7246	0.72457678	1153	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	10	0										1							12.766	12.766	2	1.0762E-06	6291	DP690-10	192.44	153.14			0.68874	0.86044	NaN	1	0	Median	30377000	17259000	13118000	16353	1153	15278	32233	77937;77938;77939;77940	77939		4	9606
VYCENQPMLPIGLSDIPGEAMVK	1	0	2 Oxidation (M)	2592.2274	0.22738204	1027	P67870	CSNK2B	Casein kinase II subunit beta	yes	yes	0	2	0	15	0															1		20.295	20.295	2	0.0015672	15484	DP690-15	91.657	80.601			0.66313	0.76237	NaN	1	0	Median	3419400	1938000	1481400	16354	1027	15279	32234	77941;77942;77943;77944	77941	1558;1559	4	9606
VYDQTNPYTDVR	0	1	Unmodified	1469.6787	0.67867245	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															14.152	14.152	2	8.1413E-05	6656	DP690-2	125.74	98.093			1.1881	1.2402	NaN	1	0	Median	16073000	7289300	8783400	16355	2418	15280	32235	77945;77946;77947;77948;77949	77948		5	9606
VYEAVELLK	1	0	Unmodified	1062.5961	0.59611202	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	6	4		1								1							17.473	17.473	2	0.0052887	13125	DP690-10	98.629	64.541			0.95006	1.0489	31.28	2	0	Median	112170000	54397000	57776000	16356	1724	15281	32236;32237	77950;77951;77952;77953;77954	77951		5	9606
VYEDWDCFK	1	0	Unmodified	1260.5121	0.51212439	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	4	0				1													17.538	17.538	2	0.0058193	11864	DP690-4	96.492	78.23			1.1502	1.2322	NaN	1	0	Median	3798200	1736000	2062200	16357	2000	15282	32238	77955	77955		1	9606
VYEFLDKLDVVR	1	1	Unmodified	1494.8082	0.80823006	168	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	1	4	0				1													18.999	18.999	3	0.0009763	13564	DP690-4	92.247	92.247			1.081	1.2329	NaN	1	0	Median	4409800	2064200	2345500	16358	168	15283	32239	77956;77957;77958	77957		3	9606
VYEIPGLEPITFAGK	1	0	Unmodified	1632.8763	0.87630962	2056	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	14	0														1			21.215	21.215	2	0.012775	17264	DP690-14	74.76	62.4			1.2654	1.5056	NaN	1	0	Median	16502000	7334300	9167900	16359	2056	15284	32240	77959	77959		1	9606
VYEIQDIYENSWTK	1	0	Unmodified	1786.8414	0.84138068	2429	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	12	0												1					19.793	19.793	2	0.0014842	15629	DP690-12	105.46	105.46			1.5006	1.8138	NaN	1	0	Median	14537000	6398200	8139300	16360	2429	15285	32241	77960	77960		1	9606
VYELLGLLGEVHPSEMINNAENLFR	0	1	Oxidation (M)	2872.4429	0.4429292	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9	0									1								23.194	23.194	3	0.00021588	18580	DP690-9	100.85	100.85			0.72622	0.88194	NaN	1	0	Median	29409000	16229000	13179000	16361	1046	15286	32242	77961;77962;77963;77964	77962	1646	4	9606
VYELLGLLGEVHPSEMINNAENLFR	0	1	Unmodified	2856.448	0.44801458	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								25.288	25.288	3	0.00068792	20877	DP690-9	70.452	57.104			0.69711	0.83163	NaN	1	0	Median	40047000	22620000	17427000	16362	1046	15286	32243	77965;77966;77967;77968;77969	77965		5	9606
VYELPFLVALDHR	0	1	Unmodified	1570.8508	0.85076357	1681	Q8NCG7	DAGLB	Sn1-specific diacylglycerol lipase beta	yes	yes	0	0	0	12	0												1					21.679	21.679	3	0.00058757	17875	DP690-12	94.688	73.334			0.83072	1.0117	NaN	1	0	Median	9970000	5118200	4851800	16363	1681	15287	32244	77970;77971;77972;77973	77970		4	9606
VYENVGLMQQQK	1	0	Oxidation (M)	1451.7079	0.70786408	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	1	0	4	0				1													12.873	12.873	2	0.00032859	5765	DP690-4	154.85	131.47			0.80306	0.87125	NaN	1	0	Median	25159000	14646000	10513000	16364	1120	15288	32245	77974;77975;77976	77976	1740	3	9606
VYENYPTYDLTER	0	1	Unmodified	1661.7573	0.7573167	674	P35659	DEK	Protein DEK	yes	yes	0	0	0	14.7	1.25													1		1	1	16.659	16.659	2	1.2809E-05	11011	DP690-13	185.99	157.42			0.73061	0.85486	5.351	2	0	Median	143020000	80916000	62101000	16365	674	15289	32246;32247;32248	77977;77978;77979;77980;77981;77982;77983;77984;77985;77986;77987	77980		11	9606
VYEVVNEDPETAFCTLANR	0	1	Unmodified	2226.0263	0.02629769	2506	Q9Y5T5	USP16	Ubiquitin carboxyl-terminal hydrolase 16	yes	yes	0	0	0	11	0											1						20.208	20.208	2	0.056316	16853	DP690-11	86.803	60.571			NaN	NaN	NaN	0	0	Median	0	0	0	16366	2506	15290	32249	77988	77988		1	9606
VYFLPITPHYVTQVIR	0	1	Unmodified	1945.0826	0.082554423	602	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	2	0		1															19.975	19.975	3	4.9602E-05	13422	DP690-2	119.96	119.96			1.0797	1.1294	NaN	1	0	Median	8056900	3551400	4505500	16367	602	15291	32250	77989;77990;77991;77992;77993	77989		5	9606
VYFVDHNNR	0	1	Unmodified	1162.552	0.55195579	2156	Q9HAU4	SMURF2	E3 ubiquitin-protein ligase SMURF2	yes	yes	0	0	0	11	0											1						11.469	11.469	3	0.038808	4156	DP690-11	53.493	39.259			0.90335	1.1172	NaN	1	0	Median	9803200	5294800	4508400	16368	2156	15292	32251	77994;77995;77996;77997	77994		4	9606
VYIPCIYVLNK	1	0	Unmodified	1380.7475	0.74754405	2436	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	14	0														1			19.843	19.843	2	0.0055668	15398	DP690-14	120.46	31.101			NaN	NaN	NaN	0	0	Median	47557000	47557000	0	16369	2436	15293	32252	77998;77999	77998		2	9606
VYIVHGVQEDLR	0	1	Unmodified	1426.7569	0.75686319	1312	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	14	0														1			14.373	14.373	3	0.0080359	8056	DP690-14	70.089	54.291			1.3628	1.6517	NaN	1	0	Median	37513000	15805000	21709000	16370	1312	15294	32253	78000;78001	78000		2	9606
VYLEQNLAAQDR	0	1	Unmodified	1418.7154	0.7153923	2114	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	0	2	0		1															14.85	14.85	2	0.00037178	7570	DP690-2	156.16	120.25			0.82367	0.86185	NaN	1	0	Median	7416100	3413800	4002300	16371	2114	15295	32254	78002;78003;78004	78004		3	9606
VYLILEYAPLGTVYR	0	1	Unmodified	1768.9764	0.97635802	124	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	13	0													1				22.634	22.634	2	0.0007301	18708	DP690-13	102.95	102.95			0.76342	0.9021	NaN	1	0	Median	4381800	1670200	2711600	16372	124	15296	32255	78005;78006	78005		2	9606
VYNVTQHAVGIVVNK	1	0	Unmodified	1639.9046	0.90459006	758	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	15	0															2		14.811	14.811	2;3	1.5492E-15	8518	DP690-15	240.65	178.48			0.93153	1.0561	3.6999	2	0	Median	245470000	122850000	122610000	16373	758	15297	32256;32257	78007;78008;78009;78010;78011;78012;78013;78014	78014		8	9606
VYNVTYTVK	1	0	Unmodified	1085.5757	0.57571092	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										1							14.117	14.117	2	0.0014449	8166	DP690-10	121.05	73.967			1.0616	1.2152	NaN	1	0	Median	409270000	204260000	205000000	16374	1270	15298	32258	78015;78016;78017;78018	78015		4	9606
VYNYNHLMPTR	0	1	Oxidation (M)	1422.6714	0.671419	950	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	1	0	14	3.46								1								3	12.275	12.275	2;3	0.0010029	4934	DP690-16	94.465	76.275			0.84784	0.94977	8.5135	4	0	Median	338300000	179210000	159080000	16375	950	15299	32259;32260;32261;32262	78019;78020;78021;78022;78023;78024;78025;78026;78027;78028;78029	78021	1468	11	9606
VYQWDDPDPR	0	1	Unmodified	1289.5677	0.56766543	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															15.585	15.585	2	0.00046711	8352	DP690-2	119.62	99.287			0.79109	0.82343	NaN	1	0	Median	39573000	21565000	18008000	16376	789	15300	32263	78030;78031;78032;78033	78033		4	9606
VYRIEGDETSTEAATR	0	2	Unmodified	1796.8541	0.85407063	854	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	1	16	0																1	12.488	12.488	3	1.0881E-07	5290	DP690-16	169.15	140.37			0.80561	0.85115	NaN	1	0	Median	28758000	14950000	13809000	16377	854	15301	32264	78034	78034		1	9606
VYSEVHFTLAKPPSVVNR	1	1	Unmodified	2042.0949	0.094910023	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	1	11	0											1						15.644	15.644	4	0.00028465	10303	DP690-11	91.592	74.514			0.59372	0.6447	NaN	1	0	Median	287790000	172600000	115190000	16378	1653	15302	32265	78035;78036;78037;78038;78039	78035		5	9606
VYSLDDIRR	0	2	Unmodified	1135.5986	0.59857163	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	1	11	0											1						14.269	14.269	3	0.0017037	8384	DP690-11	95.815	95.815			0.90718	1.1183	NaN	1	0	Median	22891000	10680000	12211000	16379	1280	15303	32266	78040;78041	78041		2	9606
VYSLFLDESR	0	1	Unmodified	1227.6136	0.61355299	2427	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	13	0													1				18.663	18.663	2	0.0045667	13663	DP690-13	91.265	75.623			0.78554	0.94784	NaN	1	0	Median	76169000	40647000	35522000	16380	2427	15304	32267	78042;78043	78042		2	9606
VYTLSVSGDR	0	1	Unmodified	1095.556	0.55603812	185	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	14.5	0.5														1	1		14.433	14.433	2	5.2174E-05	8000	DP690-14	170.24	140.07			0.95415	1.0541	13.266	2	0	Median	907010000	483170000	423840000	16381	185	15305	32268;32269	78044;78045;78046;78047;78048;78049	78045		6	9606
VYTPSNADIGLR	0	1	Unmodified	1304.6725	0.67246486	1477	Q6L8Q7	PDE12	2',5'-phosphodiesterase 12	yes	yes	0	0	0	4	0				1													15.378	15.378	2	0.0060332	9087	DP690-4	83	65.564			0.54031	0.62671	NaN	1	0	Median	5807300	3447400	2360000	16382	1477	15306	32270	78050	78050		1	9606
VYTSMSDCLIK	1	0	Oxidation (M)	1331.6101	0.61012387	2140	Q9H936	SLC25A22	Mitochondrial glutamate carrier 1	yes	yes	0	1	0	14	0														1			13.941	13.941	2	0.014721	7413	DP690-14	100.02	58.988			NaN	NaN	NaN	0	0	Median	21220000	21220000	0	16383	2140	15307	32271	78051	78051	2633	1	9606
VYVEELKPTPEGDLEILLQK	2	0	Unmodified	2312.2515	0.25152982	36	CON__P02754			yes	yes	0	0	1	4.88	4.81	2	2	1			1		1								1	20.28	20.28	2;3	3.3242E-20	11907	DP690-1	194.77	159.85		+	NaN	NaN	NaN	0	0	Median	134340000	134340000	0	16384	36	15308	32272;32273;32274;32275;32276;32277;32278;32279	78052;78053;78054;78055;78056;78057;78058;78059;78060;78061;78062;78063;78064;78065;78066;78067	78054		16	
VYVGNLGNNGNK	1	0	Unmodified	1247.6258	0.62584901	1064	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	15	0															1		12.473	12.473	2	0.00042068	5349	DP690-15	161.02	129.79			1.0792	1.2249	NaN	1	0	Median	77713000	34225000	43488000	16385	1064	15309	32280	78068;78069	78069		2	9606
VYVGNLGNNGNKTELER	1	1	Unmodified	1875.9439	0.94388869	1064	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	1	15.2	0.4															4	1	13.384	13.384	2;3	3.3439E-11	6587	DP690-15	177.83	139.2			0.93628	1.0316	0.25433	2	0	Median	161660000	81060000	80603000	16386	1064	15310	32281;32282;32283;32284;32285	78070;78071;78072;78073;78074;78075	78070		5	9606
VYVGSIYYELGEDTIR	0	1	Unmodified	1875.9254	0.92544466	2348	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	12	0												1					20.67	20.67	2	0.00035197	16675	DP690-12	140.63	98.545			NaN	NaN	NaN	0	0	Median	2720500	0	2720500	16387	2348	15311	32286	78076	78076		1	9606
VYVIGSFVDK	1	0	Unmodified	1125.607	0.60701105	1525	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	14	0														1			17.829	17.829	2	0.012913	12734	DP690-14	105.4	62.15			NaN	NaN	NaN	0	0	Median	27467000	27467000	0	16388	1525	15312	32287	78077;78078	78077		2	9606
VYVSLPNEETR	0	1	Unmodified	1305.6565	0.65648044	2317	Q9UBP0	SPAST	Spastin	yes	yes	0	0	0	12	0												1					15.382	15.382	2	0.047836	9554	DP690-12	88.496	44.726			NaN	NaN	NaN	0	0	Median	0	0	0	16389	2317	15313	32288	78079	78079		1	9606
WAAVVVPSGEEQR	0	1	Unmodified	1426.7205	0.72047768	372;514	P04439;P01893;P01889;P13747;P17693	HLA-A;HLA-H;HLA-B;HLA-E;HLA-G	HLA class I histocompatibility antigen, A-3 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H;HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, alpha chain E;HLA class I histocompatibility antigen, alpha chain G	no	no	0	0	0	14	0														1			15.922	15.922	2	0.0066022	9989	DP690-14	79.974	26.218			0.61588	0.74544	NaN	1	0	Median	46169000	26309000	19860000	16390	372;514	15314	32289	78080	78080		1	9606
WAESVPEEAPGFSNTSLIILHQLEDK	1	0	Unmodified	2909.4447	0.44470334	1738	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	11	0											1						22.025	22.025	3	0.061044	19210	DP690-11	40.098	19.185			NaN	NaN	NaN	0	0	Median	7974000	7974000	0	16391	1738	15315	32290	78081	78081		1	9606
WAGKPFELSPLVCAK	2	0	Unmodified	1701.8912	0.89124818	1582	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	1	12	0												1					17.972	17.972	3	8.6622E-06	13065	DP690-12	141.59	114.33			0.67117	0.76391	NaN	1	0	Median	82552000	48758000	33794000	16392	1582	15316	32291	78082;78083;78084	78082		3	9606
WASGLTPAQNCPR	0	1	Unmodified	1456.6881	0.6881317	160	O15533	TAPBP	Tapasin	yes	yes	0	0	0	13	0													1				14.065	14.065	2	0.00012276	7389	DP690-13	167.12	167.12			0.57302	0.69809	NaN	1	0	Median	43485000	28982000	14503000	16393	160	15317	32292	78085;78086	78086		2	9606
WASSLHGSLFPHLSLR	0	1	Unmodified	1806.9529	0.95293723	2199	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	12	0												1					17.915	17.915	4	0.074748	13102	DP690-12	31.801	31.801			1.0653	1.27	NaN	1	0	Median	32169000	13533000	18636000	16394	2199	15318	32293	78087	78087		1	9606
WATHGEPSPVNSHPQR	0	1	Unmodified	1798.8499	0.84992873	1122	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	4	0				3													10.473	10.473	3;4	8.9802E-05	2838	DP690-4	109.99	89.334			0.55672	0.6364	29.238	2	0	Median	36511000	23600000	12911000	16395	1122	15319	32294;32295;32296	78088;78089;78090;78091	78089		4	9606
WCEYGLTFTEK	1	0	Unmodified	1432.6333	0.63330216	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	14	0														1			18.439	18.439	2	4.7972E-05	13538	DP690-14	179.51	150.59			0.88362	1.0214	NaN	1	0	Median	237440000	130760000	106670000	16396	744	15320	32297	78092;78093;78094;78095	78092		4	9606
WDAWNALGSLPK	1	0	Unmodified	1356.6826	0.68263561	259	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	14	0														1			21.416	21.416	2	0.0016988	17359	DP690-14	98.04	73.951			0.64222	0.75699	NaN	1	0	Median	7589600	3632200	3957400	16397	259	15321	32298	78096;78097	78097		2	9606
WDETKGEDNIDFMPTILSR	1	1	Unmodified	2266.0576	0.057597819	652	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	11	0											1						20.434	20.434	3	0.00034274	17114	DP690-11	91.725	68.698			0.70418	0.85778	NaN	1	0	Median	55602000	34159000	21443000	16398	652	15322	32299	78098;78099	78098		2	9606
WDGVPFILR	0	1	Unmodified	1101.5971	0.59711507	469	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	4	0				1													21.013	21.013	2	0.0146	15791	DP690-4	84.916	41.669			0.87127	1.0017	NaN	1	0	Median	19597000	10258000	9338500	16399	469	15323	32300	78100;78101	78100		2	9606
WDPTGEQRPPPQGETGK	1	1	Unmodified	1878.886	0.88603946	781	P48681	NES	Nestin	yes	yes	0	0	1	10	0										1							12.219	12.219	3	0.0077309	5430	DP690-10	62.94	33.366			0.40776	0.51189	NaN	1	0	Median	80149000	55595000	24554000	16400	781	15324	32301	78102;78103;78104;78105;78106	78103		5	9606
WDQTADQTPGATPK	1	0	Unmodified	1514.7001	0.70013617	263	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	10	0										2							12.64	12.64	2	2.7836E-11	5954	DP690-10	182.92	132.47			NaN	NaN	NaN	0	0	Median	27728000	27728000	0	16401	263	15325	32302;32303	78107;78108;78109;78110	78107		4	9606
WELLQQVDTSTR	0	1	Unmodified	1474.7416	0.74160705	369	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	6.75	2.86		1					1		2								18.661	18.661	2	0.000332	12125	DP690-2	145.99	89.729		+	NaN	NaN	NaN	0	0	Median	35368000	35368000	0	16402	369	15326	32304;32305;32306;32307	78111;78112;78113;78114;78115	78111		5	9606
WEVADLQPQLK	1	0	Unmodified	1325.698	0.69795133	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	13	0													4				18.664	18.664	2	4.5843E-06	13687	DP690-13	195.57	111.93			0.66098	0.72271	NaN	1	0	Median	325630000	233320000	92307000	16403	565	15327	32308;32309;32310;32311	78116;78117;78118;78119;78120;78121	78118		6	9606
WEYMHSPSENSK	1	0	Oxidation (M)	1509.6194	0.61944301	680	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	1	0	6	0						1											10.85	10.85	3	0.00064698	3276	DP690-6	99.539	85.186			0.75128	0.8636	NaN	1	0	Median	12675000	7315700	5359700	16404	680	15328	32312	78122;78123;78124	78123	984	3	9606
WFEENASQSTVK	1	0	Unmodified	1424.6572	0.65720872	1169	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	14	0														1			14.565	14.565	2	0.00017817	8278	DP690-14	163.66	130.57			0.91688	1.1097	NaN	1	0	Median	75550000	39538000	36012000	16405	1169	15329	32313	78125;78126;78127;78128	78127		4	9606
WFLTCINQPQFR	0	1	Unmodified	1608.7871	0.78711746	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	13	0													1				20.411	20.411	2	3.7668E-10	15904	DP690-13	226.59	226.59			0.67195	0.78841	NaN	1	0	Median	138540000	83189000	55355000	16406	598	15330	32314	78129;78130;78131;78132;78133;78134	78131		6	9606
WFNGQPIHAELSPVTDFR	0	1	Unmodified	2113.0381	0.038123426	1079	Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	yes	0	0	0	14	0														2			18.799	18.799	2;3	0.00015555	14024	DP690-14	103.39	88.463			0.66857	0.80129	NaN	1	0	Median	94788000	55972000	38816000	16407	1079	15331	32315;32316	78135;78136;78137;78138;78139	78136		5	9606
WFPAVCAHSK	1	0	Unmodified	1201.5702	0.57024839	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	11	0											1						14.025	14.025	3	0.00071022	7970	DP690-11	101.66	77.313			0.96539	1.0808	NaN	1	0	Median	235650000	115350000	120300000	16408	897	15332	32317	78140;78141	78140		2	9606
WGDEHIPGSPYR	0	1	Unmodified	1412.6473	0.64731274	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.75	0.433									1	3							14.71	14.71	2;3	0.0004133	9069	DP690-10	142.83	83.477			0.71889	0.79152	15.534	2	0	Median	1680299999.9999998	981970000	698370000	16409	549	15333	32318;32319;32320;32321	78142;78143;78144;78145;78146;78147;78148;78149;78150;78151;78152;78153	78147		12	9606
WGEEEAELNK	1	0	Unmodified	1203.5408	0.54078198	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1														14.206	14.206	2	0.00050608	7662	DP690-3	118.5	65.558			0.90573	0.96788	NaN	1	0	Median	24183000	13832000	10351000	16410	797	15334	32322	78154;78155;78156;78157	78157		4	9606
WGPGSSVGSLQALSSSQR	0	1	Unmodified	1802.8911	0.89112484	781	P48681	NES	Nestin	yes	yes	0	0	0	10	0										1							17.833	17.833	2	2.0655E-09	13566	DP690-10	145.52	95.888			1.0098	1.2648	NaN	1	0	Median	44874000	20510000	24364000	16411	781	15335	32323	78158;78159	78159		2	9606
WGTLTDCVVMRDPQTK	1	1	Unmodified	1905.9077	0.90770288	848	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	14	0														1			16.336	16.336	3	0.041868	10786	DP690-14	61.186	43.228			0.79018	0.96482	NaN	1	0	Median	59426000	31143000	28284000	16412	848	15336	32324	78160	78160		1	9606
WHFIGHLQK	1	0	Unmodified	1164.6192	0.61924749	296	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	7	0							1										13.141	13.141	3	0.024354	5994	DP690-7	62.107	34.336			0.79972	0.87144	NaN	1	0	Median	17324000	9767700	7555900	16413	296	15337	32325	78161;78162;78163;78164	78161		4	9606
WIEETTAQQEMMKPGQAEDSR	1	1	2 Oxidation (M)	2496.0897	0.089702583	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	2	1	9	0									1								12.852	12.852	3	0.029981	5714	DP690-9	77.554	55.179			NaN	NaN	NaN	0	0	Median	2688900	2688900	0	16414	2411	15338	32326	78165	78165	2837;2838	1	9606
WISIMTER	0	1	Unmodified	1034.5219	0.52190122	404	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	14	0														1			17.575	17.575	2	0.04162	12385	DP690-14	124.59	74.57			0.87496	0.84902	NaN	1	0	Median	6625799999.999999	3508199999.9999995	3117599999.9999995	16415	404	15339	32327	78166	78166		0	9606
WKDSDEADLVLAK	2	0	Unmodified	1488.746	0.74602373	1189	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	1	15	0															1		15.595	15.595	2	0.00053432	9557	DP690-15	142.76	87.723			0.79309	0.90783	NaN	1	0	Median	22773000	12236000	10537000	16416	1189	15340	32328	78167;78168;78169	78167		3	9606
WKPGSLASHVK	2	0	Unmodified	1208.6666	0.66659162	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	10	4						1								1			11.171	11.171	3	0.00083058	3778	DP690-6	97.452	97.452			1.0381	1.1152	20.578	2	0	Median	185510000	97074000	88432000	16417	391	15341	32329;32330	78170;78171;78172;78173;78174;78175	78174		6	9606
WLAIDANAR	0	1	Unmodified	1028.5403	0.54032847	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	3	0			1														16.227	16.227	2	0.037079	10327	DP690-3	71.501	71.501			1.2349	1.4187	NaN	1	0	Median	16537000	7574900	8962300	16418	1300	15342	32331	78176;78177	78176		2	9606
WLGNLLAR	0	1	Unmodified	941.54469	0.54468557	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										2							18.961	18.961	2	0.021181	15188	DP690-10	128.82	59.723			NaN	NaN	NaN	0	0	Median	0	0	0	16419	1492	15343	32332;32333	78178;78179	78178		2	9606
WLLLTGISAQQNR	0	1	Unmodified	1498.8256	0.82561145	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	7.67	4.03		1								1	1						20.128	20.128	2	3.9045E-07	16989	DP690-10	169.41	108.5			1.3242	1.477	22.392	2	0	Median	70603000	57825000	12778000	16420	1075	15344	32334;32335;32336	78180;78181;78182;78183;78184;78185;78186	78181		7	9606
WLLQGIPAGTAEEEEAR	0	1	Unmodified	1868.9268	0.92684164	20	C9JA33;Q8IXS6	PALM2	Paralemmin-2	yes	no	0	0	0	10	0										1							19.306	19.306	2	0.00057545	15713	DP690-10	148.78	63.262			NaN	NaN	NaN	0	0	Median	0	0	0	16421	20	15345	32337	78187	78187		1	9606
WLNVHYHCSGAPAAPLQ	0	0	Unmodified	1919.9101	0.91008614	1223	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	0	0	12	0												1					15.786	15.786	3	0.002712	10095	DP690-12	122.63	94.084			NaN	NaN	NaN	0	0	Median	0	0	0	16422	1223	15346	32338	78188;78189	78188		2	9606
WLPAGDALLQMITIHLPSPVTAQK	1	0	Oxidation (M)	2615.4145	0.4145296	483	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	11	0											1						22.986	22.986	3	0.00042408	20496	DP690-11	92.136	79.842			0.72377	0.89159	NaN	1	0	Median	11408000	7016000	4392400	16423	483	15347	32339	78190;78191;78192;78193;78194	78190	602	5	9606
WLPAGDALLQMITIHLPSPVTAQK	1	0	Unmodified	2599.4196	0.41961498	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	10	1									1		1						24.824	24.824	3	0.0014681	22741	DP690-11	113.78	82.712			0.9931	1.1596	NaN	1	0	Median	15091000	14494000	597070	16424	483	15347	32340;32341	78195;78196;78197	78195		3	9606
WLPQQNAAHFLLSTNDK	1	0	Unmodified	1982.001	0.0010096381	1458	Q66LE6	PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	yes	yes	0	0	0	5	0					1												17.924	17.924	3	0.0010177	11768	DP690-5	79.013	79.013			2.132	2.1329	NaN	1	0	Median	17018000	4322000	12696000	16425	1458	15348	32342	78198	78198		1	9606
WLSCETQLPVSFR	0	1	Unmodified	1621.7923	0.79226242	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							19.543	19.543	2	0.0043894	16135	DP690-10	86.014	68.847			0.77394	0.96627	NaN	1	0	Median	67078000	34813000	32266000	16426	269	15349	32343	78199	78199		1	9606
WLSDECTNAVVNFLSR	0	1	Unmodified	1909.8992	0.89924668	259	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	14	0														1			22.319	22.319	2	3.4233E-06	18576	DP690-14	137.95	108.88			0.97528	1.2083	NaN	1	0	Median	10068000	4771700	5296700	16427	259	15350	32344	78200	78200		1	9606
WLSTSIPEAQWHSSLAR	0	1	Unmodified	1967.9854	0.98535957	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															17.707	17.707	3	1.2924E-05	10955	DP690-2	125.39	101.87			0.88664	0.92396	NaN	1	0	Median	27224000	14811000	12414000	16428	789	15351	32345	78201;78202;78203	78203		3	9606
WLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYR	0	2	Unmodified	4564.103	0.10299147	1416	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	1	11	0											1						14.983	14.983	7	0.077286	9389	DP690-11	9.7249	0.13708			NaN	NaN	NaN	0	0	Median	85841000	85841000	0	16429	1416	15352	32346	78204;78205	78204		2	9606
WMIQYNNLNLK	1	0	Oxidation (M)	1451.7231	0.72312022	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	1	0	7	4			1								1						18.296	18.296	2	0.00062901	14217	DP690-11	117.4	117.4			0.88748	0.9943	3.3753	2	0	Median	146160000	63676000	82483000	16430	470	15353	32347;32348	78206;78207;78208;78209	78207	569	4	9606
WNFDDLLEK	1	0	Unmodified	1178.5608	0.56078914	2436	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	14	0														1			21.469	21.469	2	0.016746	17440	DP690-14	82.75	48.578			0.90088	1.0877	NaN	1	0	Median	29005000	12422000	16583000	16431	2436	15354	32349	78210;78211	78210		2	9606
WNLDELPKFEK	2	0	Unmodified	1417.7242	0.72416608	517	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	12	0												1					18.549	18.549	3	0.00064958	13946	DP690-12	101.35	64.671			0.81939	0.9153	NaN	1	0	Median	185900000	106750000	79149000	16432	517	15355	32350	78212;78213;78214;78215	78215		4	9606
WNTDNTLGTEIAIEDQICQGLK	1	0	Unmodified	2518.201	0.20096759	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	14	0														2			22.535	22.535	2	1.5259999999999999E-19	18773	DP690-14	191.19	191.19			0.8394	0.98989	NaN	1	0	Median	7950100	4808500	3141600	16433	744	15356	32351;32352	78216;78217;78218;78219	78216		4	9606
WNTDNTLGTEISWENK	1	0	Unmodified	1906.8697	0.86972069	2433	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	14	0														1			18.817	18.817	2	0.076069	14058	DP690-14	83.087	53.083			NaN	NaN	NaN	0	0	Median	0	0	0	16434	2433	15357	32353	78220	78220		1	9606
WNVLGLQGALLTHFLQPIYLK	1	0	Unmodified	2423.3729	0.37292278	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	9	0									1								25.185	25.185	3	0.0030177	20729	DP690-9	63.392	63.392			0.72	0.81953	NaN	1	0	Median	826390	454440	371950	16435	897	15358	32354	78221;78222	78221		2	9606
WPTETDVSSAK	1	0	Unmodified	1219.5721	0.57208211	604	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	10	0										1							14.234	14.234	2	0.0015648	8354	DP690-10	137.05	68.663			NaN	NaN	NaN	0	0	Median	432860000	432860000	0	16436	604	15359	32355	78223;78224	78223		2	9606
WQALLVQIR	0	1	Unmodified	1125.6659	0.66586334	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								19.302	19.302	2	0.0049019	14003	DP690-9	100.19	100.19			0.96423	1.2064	NaN	1	0	Median	4484300	2154700	2329600	16437	1264	15360	32356	78225;78226	78225		2	9606
WQAVLAQTDVR	0	1	Unmodified	1285.6779	0.67788459	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	8	3.54		1							1	1	1						16.085	16.085	2	1.2509E-05	11092	DP690-10	192.64	128.37			0.76732	0.92917	6.9432	4	0	Linear	615040000	343910000	271130000	16438	1319	15361	32357;32358;32359;32360	78227;78228;78229;78230;78231;78232;78233;78234;78235;78236;78237;78238	78228		12	9606
WQDAQATLQK	1	0	Unmodified	1187.5935	0.59348625	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	4	0				1													13.05	13.05	2	0.043854	6055	DP690-4	66.299	13.362			0.87542	0.95209	NaN	1	0	Median	22485000	11523000	10962000	16439	1227	15362	32361	78239	78239		1	9606
WQNNLLPSR	0	1	Unmodified	1126.5883	0.5883413	968	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	12	4								1								1	15.896	15.896	2	0.0007509	9645	DP690-16	136.27	116.27			0.71129	0.80019	0.54612	2	0	Median	112990000	62754000	50237000	16440	968	15363	32362;32363	78240;78241;78242;78243;78244;78245;78246	78240		7	9606
WQPDTEEEYEDSSGNVVNKK	2	0	Unmodified	2353.0346	0.03461377	1166	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	1	12	0												2					14.263	14.263	3	1.3665E-09	7925	DP690-12	158.98	128.03			NaN	NaN	NaN	0	0	Median	36567000	0	36567000	16441	1166	15364	32364;32365	78247;78248;78249	78247		3	9606
WQQVWLLALER	0	1	Unmodified	1440.7878	0.78776939	2411;1102	Q9UPN3;Q03001	MACF1;DST	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;Dystonin	no	no	0	0	0	9	0									1								22.288	22.288	2	0.0024528	17580	DP690-9	132.88	60.55			NaN	NaN	NaN	0	0	Median	1216000	0	1216000	16442	2411;1102	15365	32366	78250;78251;78252	78252		3	9606
WSANEIQVVVATVAFGMGIDKPDVR	1	1	Unmodified	2701.3898	0.38977142	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	11	0											1						25.763	25.763	3	0.00029311	23776	DP690-11	77.584	58.186			0.79174	0.86656	NaN	1	0	Median	3012300	1668000	1344300	16443	751	15366	32367	78253;78254	78254		2	9606
WSDQGPAQTSR	0	1	Unmodified	1231.5582	0.55816338	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										1							11.299	11.299	2	0.0015348	4111	DP690-10	102.06	77.859			0.82532	1.0338	NaN	1	0	Median	41655000	23546000	18109000	16444	2065	15367	32368	78255;78256;78257;78258	78258		4	9606
WSLQSEAHR	0	1	Unmodified	1112.5363	0.53630573	1366	Q16658	FSCN1	Fascin	yes	yes	0	0	0	4	0				1													12.716	12.716	2	0.0040205	5537	DP690-4	103.74	65.579			0.97033	1.1294	NaN	1	0	Median	9438900	5198500	4240400	16445	1366	15368	32369	78259;78260	78260		2	9606
WTAPEAALYGR	0	1	Unmodified	1233.6142	0.6142217	412;477	P07947;P06241;P12931	YES1;FYN;SRC	Tyrosine-protein kinase Yes;Tyrosine-protein kinase Fyn;Proto-oncogene tyrosine-protein kinase Src	no	no	0	0	0	12	0												1					16.891	16.891	2	0.0021973	11594	DP690-12	96.331	28.339			0.66	0.75302	NaN	1	0	Median	160160000	90695000	69466000	16446	412;477	15369	32370	78261;78262;78263;78264	78261		4	9606
WTELGALDILQMLGR	0	1	Unmodified	1714.9076	0.90762652	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							25.584	25.584	2	0.00354	23763	DP690-10	83.226	46.547			0.74895	0.90959	NaN	1	0	Median	4064700	1944600	2120200	16447	269	15370	32371	78265;78266	78266		2	9606
WTEYGLTFTEK	1	0	Unmodified	1373.6503	0.65033243	552	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	14	0														1			18.521	18.521	2	0.002766	13648	DP690-14	92.538	61.117			0.87936	1.0687	NaN	1	0	Median	53580000	30227000	23352000	16448	552	15371	32372	78267;78268;78269	78267		3	9606
WTLLQEQGTK	1	0	Unmodified	1202.6295	0.62953741	43;31;368	CON__P02538;P02538;CON__P48668;P48668;CON__P13647;P13647;P04259	KRT6A;KRT6C;KRT5;KRT6B	Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6B	no	no	0	0	0	1.5	0.5	1	1															16.438	16.438	2	0.0030248	7855	DP690-1	131.5	44.834		+	NaN	NaN	NaN	0	0	Median	7795800	7795800	0	16449	31;43;368	15372	32373;32374	78270;78271	78270		2	9606
WTQVNQAIADQLQK	1	0	Unmodified	1641.8475	0.84746911	1762	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	10	0										1							17.556	17.556	2	0.076099	13199	DP690-10	83.081	49.206			NaN	NaN	NaN	0	0	Median	0	0	0	16450	1762	15373	32375	78272	78272		1	9606
WTSQDSLLGMEFSGR	0	1	Oxidation (M)	1728.7777	0.77773456	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	2.67	0.471		1	2														18.865	18.865	2	2.2699E-06	12230	DP690-2	180.24	161.14			0.88392	0.92112	NaN	1	0	Median	27314000	14191000	13123000	16451	789	15374	32376;32377;32378	78273;78274;78275;78276;78277;78278;78279;78280	78275	1191	8	9606
WTSQDSLLGMEFSGR	0	1	Unmodified	1712.7828	0.78281994	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															20.282	20.282	2	1.9125E-05	13801	DP690-2	165.35	126.09			0.9084	0.94781	NaN	1	0	Median	5144300	2666500	2477900	16452	789	15374	32379	78281;78282;78283;78284	78283		4	9606
WVPVVDPQEEER	0	1	Unmodified	1481.7151	0.71505795	1742	Q8WUZ0	BCL7C	B-cell CLL/lymphoma 7 protein family member C	yes	yes	0	0	0	14	0														3			16.78	16.78	2	0.00053453	11296	DP690-14	112.83	67.236			0.78952	0.94773	NaN	1	0	Median	118190000	83220000	34968000	16453	1742	15375	32380;32381;32382	78285;78286;78287;78288;78289	78286		5	9606
WVTTASLLDYDTVAGADK	1	0	Unmodified	1924.9418	0.941823	1329	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	9.5	0.5									1	1							20.495	20.495	2	4.6216E-05	17446	DP690-10	124.42	97.79			0.76322	0.93964	40.606	2	0	Median	35424000	14850000	20574000	16454	1329	15376	32383;32384	78290;78291;78292;78293;78294;78295	78291		6	9606
WVTVGDTSLR	0	1	Unmodified	1132.5877	0.58767259	1742	Q8WUZ0;Q9BQE9;Q4VC05	BCL7C;BCL7B;BCL7A	B-cell CLL/lymphoma 7 protein family member C;B-cell CLL/lymphoma 7 protein family member B;B-cell CLL/lymphoma 7 protein family member A	yes	no	0	0	0	14	0														1			16.353	16.353	2	0.00048121	10776	DP690-14	119.21	87.275			0.84713	1.017	NaN	1	0	Median	85233000	48703000	36530000	16455	1742	15377	32385	78296;78297	78297		2	9606
WVYLEGIFTGSADIK	1	0	Unmodified	1697.8665	0.86647322	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								22.347	22.347	2	0.00074649	17635	DP690-9	127.17	93.284			0.71793	0.88727	NaN	1	0	Median	3600900	1804600	1796300	16456	1264	15378	32386	78298;78299;78300	78299		3	9606
YAACNAVGQMATDFAPGFQK	1	0	Oxidation (M)	2161.9561	0.95610963	82	O00410	IPO5	Importin-5	yes	yes	0	1	0	3	0			1														17.084	17.084	2	2.5801E-09	11358	DP690-3	148.48	124.25			1.0103	1.0839	NaN	1	0	Median	15860000	7548200	8312200	16457	82	15379	32387	78301;78302;78303;78304	78302	99	4	9606
YAALSDQGLDIK	1	0	Unmodified	1292.6612	0.66123147	1758	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	7.4	3.26			1	1					1	1	1						16.606	16.606	2	4.3364E-05	11693	DP690-11	131.52	101.97			0.79211	0.9104	17.689	4	0	Median	745860000	426500000	319370000	16458	1758	15380	32388;32389;32390;32391;32392	78305;78306;78307;78308;78309;78310;78311;78312;78313	78306		9	9606
YAASSYLSLTSSDWK	1	0	Unmodified	1677.7886	0.78861683	47	CON__Q1RMN8			yes	yes	0	0	0	7	0							1										19.135	19.135	2	0.022795	13671	DP690-7	91.961	64.19		+	NaN	NaN	NaN	0	0	Median	5295100	5295100	0	16459	47	15381	32393	78314	78314		1	
YADEEIPR	0	1	Unmodified	991.46108	0.4610751	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	6	4		1								1							13.036	13.036	2	0.03973	5420	DP690-2	127.12	109.27			0.77958	0.84699	0.79357	2	0	Median	454890000	267130000	187760000	16460	250	15382	32394;32395	78315;78316	78316		0	9606
YADQEVPR	0	1	Unmodified	976.46141	0.46140945	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	4.67	3.77		2								1							11.276	11.276	2	0.02992	3357	DP690-2	136.11	73.399			0.82989	0.92708	NaN	1	0	Median	509400000	279700000	229690000	16461	1270	15383	32396;32397;32398	78317;78318;78319	78319		2	9606
YAEDIFGELFTQANTFASR	0	1	Unmodified	2179.0222	0.02219859	2526	Q9Y6W5	WASF2	Wiskott-Aldrich syndrome protein family member 2	yes	yes	0	0	0	12	0												1					24.626	24.626	2	7.5324E-17	21170	DP690-12	198.29	183.51			0.84809	1.0323	NaN	1	0	Median	2163600	1159700	1003900	16462	2526	15384	32399	78320;78321;78322;78323;78324;78325	78320		6	9606
YAEIFQDLLALVR	0	1	Unmodified	1549.8504	0.85042922	1465	Q69YN4	KIAA1429	Protein virilizer homolog	yes	yes	0	0	0	10	0										1							26.407	26.407	2	0.0076629	24702	DP690-10	90.685	90.685			0.73426	0.85567	NaN	1	0	Median	1453400	776300	677090	16463	1465	15385	32400	78326	78326		1	9606
YAELLEEHR	0	1	Unmodified	1158.5669	0.56693715	701	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	11	0											2						13.405	13.405	2;3	0.023863	7000	DP690-11	76.1	32.465			NaN	NaN	NaN	0	0	Median	0	0	0	16464	701	15386	32401;32402	78327;78328	78327		2	9606
YAEYFLRPMLQYVCDNSPEVR	0	2	Oxidation (M)	2665.2305	0.23049358	82	O00410	IPO5	Importin-5	yes	yes	0	1	1	3	0			1														18.658	18.658	3	0.00012552	13496	DP690-3	105.79	96.632			1.0036	1.0382	NaN	1	0	Median	12791000	6620000	6171000	16465	82	15387	32403	78329	78329	100	1	9606
YAEYSFTSLPVPESNLR	0	1	Unmodified	1971.9578	0.95780742	1446	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	10	0										1							19.82	19.82	2	0.01576	16492	DP690-10	108.59	78.112			NaN	NaN	NaN	0	0	Median	19150000	19150000	0	16466	1446	15388	32404	78330;78331	78330		2	9606
YAGEPVPFIEPPESFEFYAQQLR	0	1	Unmodified	2713.3064	0.30641894	732	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	10	0										2							23.514	23.514	2	5.8829E-09	21305	DP690-10	155.09	123.51			NaN	NaN	NaN	0	0	Median	6439500	6439500	0	16467	732	15389	32405;32406	78332;78333;78334;78335	78332		4	9606
YAGGNPVCVRPTPK	1	1	Unmodified	1514.7664	0.76638202	1305	Q15004	KIAA0101	PCNA-associated factor	yes	yes	0	0	1	12	4								1								1	11.371	11.371	3	0.00010339	4084	DP690-8	114.24	81.801			0.5686	0.64875	3.494	2	0	Median	27872000	17686000	10186000	16468	1305	15390	32407;32408	78336;78337;78338;78339;78340;78341	78340		6	9606
YAICSALAASALPALVMSK	1	0	Oxidation (M)	1952.0111	0.011105318	681	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	13	0													1				21.368	21.368	2	0.00082197	17150	DP690-13	118.13	87.238			NaN	NaN	NaN	0	0	Median	9726300	9726300	0	16469	681	15391	32409	78342;78343	78342	985	2	9606
YAILNEPFKGEMNR	1	1	Oxidation (M)	1696.8243	0.82429083	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	1	10	0										1							15.148	15.148	3	0.0023813	9741	DP690-10	77.279	77.279			0.67863	0.81493	NaN	1	0	Median	154700000	80739000	73961000	16470	1297	15392	32410	78344;78345	78344	1986	2	9606
YALNYLELFHTSIEQEKER	1	1	Unmodified	2382.1856	0.18557552	1891	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	1	9	0									1								19.365	19.365	4	0.03633	14114	DP690-9	57.788	45.655			0.56585	0.65628	NaN	1	0	Median	4515400	2812600	1702700	16471	1891	15393	32411	78346	78346		1	9606
YALQSAAGK	1	0	Unmodified	907.47633	0.47633123	2214	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	10	0										1							11.377	11.377	2	0.067198	4265	DP690-10	62.107	17.991			0.9196	1.1303	NaN	1	0	Median	40288000	21652000	18636000	16472	2214	15394	32412	78347	78347		1	9606
YALTGDEVK	1	0	Unmodified	994.49713	0.49712625	986	P62701;P22090;Q8TD47	RPS4X;RPS4Y1;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	15	0															1		13.397	13.397	2	0.0035666	6591	DP690-15	105.57	61.76			0.89541	0.97942	NaN	1	0	Median	192040000	98155000	93885000	16473	986	15395	32413	78348;78349	78348		2	9606
YALTGDEVKK	2	0	Unmodified	1122.5921	0.59208927	986	P62701;P22090;Q8TD47	RPS4X;RPS4Y1;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	1	12.3	3.77							1								2		11.152	11.152	2;3	3.2572E-05	3730	DP690-15	140.83	115.6			1.0159	1.1641	49.697	3	0	Plateau	199540000	95373000	104170000	16474	986	15396	32414;32415;32416	78350;78351;78352;78353;78354;78355;78356;78357;78358;78359;78360;78361	78355		12	9606
YALYDASFETK	1	0	Unmodified	1306.6081	0.60813326	932	P60981	DSTN	Destrin	yes	yes	0	0	0	12	4								1								1	17.196	17.196	2	9.2544E-05	10408	DP690-8	140.11	116.59			0.85293	0.90199	6.8718	2	0	Median	297890000	160000000	137880000	16475	932	15397	32417;32418	78362;78363;78364;78365;78366;78367;78368;78369	78366		8	9606
YALYDATYETK	1	0	Unmodified	1336.6187	0.61869795	572	P23528;Q9Y281	CFL1;CFL2	Cofilin-1;Cofilin-2	yes	no	0	0	0	13.3	3.77								1								2	16.939	16.939	2	6.9464E-05	8914	DP690-8	177.7	124.02			0.87734	0.83942	17.646	3	0	Median	3288099999.9999995	1758899999.9999998	1529199999.9999998	16476	572	15398	32419;32420;32421	78370;78371;78372;78373;78374;78375;78376;78377;78378;78379;78380;78381	78379		12	9606
YANEVNSDAGAFK	1	0	Unmodified	1384.6259	0.62590859	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	11.5	0.5											1	1					13.595	13.595	2	4.1035E-08	6940	DP690-12	199.08	152.61			0.88855	1.0188	17.392	2	0	Median	349190000	183490000	165710000	16477	2342	15399	32422;32423	78382;78383;78384;78385;78386;78387;78388;78389	78388		8	9606
YAPDENCPDQNPR	0	1	Unmodified	1574.642	0.64196936	2345	Q9UHN6	TMEM2	Transmembrane protein 2	yes	yes	0	0	0	10	0										1							10.932	10.932	2	2.0565E-05	3586	DP690-10	179.8	157.02			0.64385	0.8042	NaN	1	0	Median	29769000	18297000	11472000	16478	2345	15400	32424	78390;78391	78390		2	9606
YAPDKTSTVLTR	1	1	Unmodified	1350.7143	0.71432967	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	1	13	0													1				11.765	11.765	3	0.00074739	4425	DP690-13	96.334	64.612			0.73567	0.89807	NaN	1	0	Median	30368000	17842000	12526000	16479	2194	15401	32425	78392;78393	78393		2	9606
YAPLHLVPLIER	0	1	Unmodified	1419.8238	0.82382054	1531;1849	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	6.75	3.77			2							1	1						18.208	18.208	2;3	2.8264E-05	14043	DP690-11	132.03	112.83			0.81892	0.97587	24.71	3	0	Plateau	232550000	159950000	72604000	16480	1531;1849	15402	32426;32427;32428;32429	78394;78395;78396;78397;78398;78399;78400;78401;78402;78403;78404;78405	78397		12	9606
YAPSEAGLHEMDIR	0	1	Oxidation (M)	1603.7301	0.73005609	549	P21333	FLNA	Filamin-A	yes	yes	0	1	0	7	3.56		2							2	2							13.031	13.031	2;3	0.0001097	6613	DP690-10	124.6	77.803			0.75206	0.85485	12.634	6	0	Median	2124999999.9999998	1194300000	930710000	16481	549	15403	32430;32431;32432;32433;32434;32435	78406;78407;78408;78409;78410;78411;78412;78413;78414;78415;78416;78417;78418;78419;78420;78421;78422;78423;78424;78425;78426	78412	712	21	9606
YAPSEAGLHEMDIR	0	1	Unmodified	1587.7351	0.73514147	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	0.577									1	4	1						14.916	14.916	2;3	0.00014291	9368	DP690-10	149.69	130.41			0.74247	0.78185	11.137	3	0	Plateau	1221400000	668130000	553280000	16482	549	15403	32436;32437;32438;32439;32440;32441	78427;78428;78429;78430;78431;78432;78433;78434;78435;78436;78437;78438;78439;78440	78429		14	9606
YAPTEAQLNAVDALIDSMSLAK	1	0	Oxidation (M)	2336.157	0.15697751	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	1	0	8.33	3.77			1								2						21.944	21.944	2	0.00010796	19216	DP690-11	118.71	82.077			1.5526	1.7694	60.841	2	0	Median	28617000	15864000	12753000	16483	480	15404	32442;32443;32444	78441;78442;78443;78444;78445;78446;78447;78448	78443	596	8	9606
YAPTEAQLNAVDALIDSMSLAK	1	0	Unmodified	2320.1621	0.16206289	480	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	11	0											1						24.858	24.858	2	1.9164E-06	22753	DP690-11	160.03	160.03			0.61626	0.75876	NaN	1	0	Median	10922000	6430900	4491100	16484	480	15404	32445	78449;78450;78451;78452	78450		4	9606
YAPTEVGLHEMHIK	1	0	Oxidation (M)	1639.8028	0.8028271	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	10	0										1							12.008	12.008	3	0.00031545	5137	DP690-10	104.17	89.573			0.41181	0.47016	NaN	1	0	Median	423660000	277760000	145900000	16485	250	15405	32446	78453;78454;78455	78453	254	3	9606
YAQPATATAATAAAAAAAAYSDGYGR	0	1	Unmodified	2431.1404	0.14041625	169	O43251	RBFOX2	RNA binding protein fox-1 homolog 2	yes	yes	0	0	0	13	0													1				20.101	20.101	2	0.0081428	15547	DP690-13	83.849	64.082			NaN	NaN	NaN	0	0	Median	0	0	0	16486	169	15406	32447	78456	78456		1	9606
YASFQVENDQER	0	1	Unmodified	1484.6532	0.65318598	883	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	7.67	3.4			1						1		1						14.03	14.03	2	3.8009E-10	8009	DP690-11	223.31	195.54			0.89111	1.0093	15.076	3	0	Median	295350000	161980000	133370000	16487	883	15407	32448;32449;32450	78457;78458;78459;78460;78461;78462;78463;78464;78465;78466	78459		10	9606
YASINTHLGIEQSR	0	1	Unmodified	1587.8005	0.80051892	783;798	P49674;P48730	CSNK1E;CSNK1D	Casein kinase I isoform epsilon;Casein kinase I isoform delta	no	no	0	0	0	13	0													1				14.232	14.232	2	4.7018E-05	7680	DP690-13	118.77	94.677			0.9269	1.1363	NaN	1	0	Median	31023000	15038000	15985000	16488	798;783	15408	32451	78467;78468;78469;78470;78471	78467		5	9606
YASNAVSEALIR	0	1	Unmodified	1292.6725	0.67246486	2385	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	5	0					1												16.116	16.116	2	0.00020681	9366	DP690-5	157.75	126.67			0.84945	0.86899	NaN	1	0	Median	399320000	213830000	185490000	16489	2385	15409	32452	78472;78473;78474;78475	78475		4	9606
YATALYSAASK	1	0	Unmodified	1144.5764	0.57643921	773	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	15.5	0.5															1	1	13.698	13.698	2	0.00011438	6925	DP690-15	133.99	110.95			0.71542	0.79182	NaN	1	0	Median	153830000	80600000	73230000	16490	773	15410	32453;32454	78476;78477;78478;78479	78476		4	9606
YATLATVSR	0	1	Unmodified	980.5291	0.52909508	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								13.316	13.316	2	0.00077549	5751	DP690-2	134.48	109.66			0.96791	1.0784	6.9011	2	0	Median	54124000	28658000	25467000	16491	1264	15411	32455;32456	78480;78481;78482;78483;78484;78485;78486	78481		7	9606
YATSCYSCCPR	0	1	Unmodified	1423.5319	0.53189033	1178	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	4	0				1													11.733	11.733	2	0.00012562	4309	DP690-4	152.34	151.65			0.703	0.81786	NaN	1	0	Median	8544900	4693700	3851200	16492	1178	15412	32457	78487;78488;78489;78490	78488		4	9606
YAVLYQPLFDK	1	0	Unmodified	1355.7125	0.71253876	896	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	4	0				1													19.477	19.477	2	0.0064544	14116	DP690-4	85.377	66.597			0.88217	0.94905	NaN	1	0	Median	5836000	2989100	2846900	16493	896	15413	32458	78491;78492	78491		2	9606
YAVLYQPLFDKR	1	1	Unmodified	1511.8136	0.81364979	896	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	1	4.5	0.5				1	1												17.439	17.439	3	2.3307E-05	11662	DP690-4	125.72	93.999			1.0073	1.1139	9.0794	2	0	Median	75289000	40872000	34417000	16494	896	15414	32459;32460	78493;78494;78495;78496;78497;78498;78499;78500	78493		8	9606
YAVTTGDHGIIR	0	1	Unmodified	1301.6728	0.67279921	878	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	3	0			3														13.054	13.054	2;3	3.8337E-05	6023	DP690-3	133.42	108.58			2.406	2.5758	NaN	1	0	Median	83145000	23338000	59807000	16495	878	15415	32461;32462;32463	78501;78502;78503;78504;78505;78506	78502		6	9606
YAWQGVALLPFVDER	0	1	Unmodified	1762.9043	0.90425571	2088	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	11	0											1						23.093	23.093	2	1.1393E-06	20614	DP690-11	182.92	158.57			0.74716	0.89671	NaN	1	0	Median	26969000	15688000	11281000	16496	2088	15416	32464	78507;78508;78509;78510;78511	78507		5	9606
YCALLLPLLK	1	0	Unmodified	1202.7097	0.70970199	1184	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	11	0											1						21.751	21.751	2	0.0041129	18942	DP690-11	91.9	79.945			0.77911	0.96186	NaN	1	0	Median	17109000	9539400	7569300	16497	1184	15417	32465	78512;78513	78512		2	9606
YCAYNIGDQSAINELMQMR	0	1	2 Oxidation (M)	2307.9922	0.99223714	2342	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	2	0	12	0												1					18.292	18.292	2	1.7832E-09	13583	DP690-12	151.66	136.68			0.62302	0.74699	NaN	1	0	Median	22369000	13448000	8920900	16498	2342	15418	32466	78514;78515	78514	2779;2780	2	9606
YCDPDSYHR	0	1	Unmodified	1211.4666	0.46657118	592	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	12	0												1					10.579	10.579	3	0.013611	2875	DP690-12	118.33	107.5			0.8923	1.0581	NaN	1	0	Median	46552000	25247000	21305000	16499	592	15419	32467	78516	78516		0	9606
YCDPNLGLR	0	1	Unmodified	1106.5179	0.51787847	588	P25942	CD40	Tumor necrosis factor receptor superfamily member 5	yes	yes	0	0	0	13	0													1				14.729	14.729	2	0.014453	8316	DP690-13	85.064	65.277			0.80897	0.96967	NaN	1	0	Median	92248000	57144000	35105000	16500	588	15420	32468	78517;78518;78519	78517		3	9606
YCFPNYVGRPK	1	1	Unmodified	1399.6707	0.67069072	942	P61163;P42025	ACTR1A;ACTR1B	Alpha-centractin;Beta-centractin	yes	no	0	0	1	14	0														1			14.591	14.591	3	0.024426	8385	DP690-14	58.37	43.168			0.63526	0.79342	NaN	1	0	Median	42766000	22561000	20205000	16501	942	15421	32469	78520	78520		1	9606
YCPICDVQVHK	1	0	Unmodified	1417.6482	0.64824072	659	P35226	BMI1	Polycomb complex protein BMI-1	yes	yes	0	0	0	14	0														1			13.201	13.201	3	0.0066176	6403	DP690-14	72.848	53.107			0.70373	0.83846	NaN	1	0	Median	132560000	79539000	53020000	16502	659	15422	32470	78521;78522;78523	78523		3	9606
YCRPESQEHPEADPGSAAPYLK	1	1	Unmodified	2501.1281	0.128137	708	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	1	3	0			1														13.198	13.198	4	0.0012211	6230	DP690-3	70.907	45.499			0.49579	0.54986	NaN	1	0	Median	19110000	11792000	7317800	16503	708	15423	32471	78524;78525	78524		2	9606
YCSEHSVNEHEDGDGDDDEGDDEEWKPTK	2	0	Unmodified	3393.276	0.27599562	311	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	1	10	0										1							12.258	12.258	4	5.3029E-13	5476	DP690-10	159.46	159.46			0.69469	0.88837	NaN	1	0	Median	58450000	35663000	22788000	16504	311	15424	32472	78526;78527;78528;78529	78526		4	9606
YCTDTGVLFR	0	1	Unmodified	1230.5703	0.57030797	478	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	4	0				1													16.74	16.74	2	9.1289E-05	10749	DP690-4	153.04	111.16			0.97848	1.1192	NaN	1	0	Median	21754000	10900000	10855000	16505	478	15425	32473	78530;78531;78532;78533	78531		4	9606
YDAFGEDSSSAMGVENR	0	1	Oxidation (M)	1849.7425	0.74247127	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	1	0	12	0												1					14.763	14.763	2	1.2163E-06	8671	DP690-12	143.25	131.72			0.95154	1.1289	NaN	1	0	Median	49219000	22064000	27155000	16506	2450	15426	32474	78534;78535;78536;78537;78538;78539	78536	2900	6	9606
YDAFGEDSSSAMGVENR	0	1	Unmodified	1833.7476	0.74755665	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	12	0												1					16.402	16.402	2	0.065209	10954	DP690-12	96.464	83.456			0.85781	1.0223	NaN	1	0	Median	32611000	17845000	14767000	16507	2450	15426	32475	78540	78540		0	9606
YDAFLASESLIK	1	0	Unmodified	1355.6973	0.69728262	1004	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	15	0															1		19.676	19.676	2	0.0077815	14814	DP690-15	78.513	48.962			0.91907	1.0835	NaN	1	0	Median	14813000	7772200	7040500	16508	1004	15427	32476	78541;78542	78541		2	9606
YDDYPENGVVQMNSR	0	1	Oxidation (M)	1801.7577	0.7577274	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	1	0	11	0											1						14.031	14.031	2	0.0041468	7987	DP690-11	87.641	73.555			0.71328	0.85308	NaN	1	0	Median	50971000	28097000	22874000	16509	1932	15428	32477	78543;78544;78545;78546	78544	2461	4	9606
YDDYPENGVVQMNSR	0	1	Unmodified	1785.7628	0.76281278	1932	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	11	0											1						15.664	15.664	2	0.00089839	10396	DP690-11	138.2	113.7			NaN	NaN	NaN	0	0	Median	21664000	0	21664000	16510	1932	15428	32478	78547	78547		1	9606
YDEAASYIQSK	1	0	Unmodified	1273.5826	0.5826468	377	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	0	14	0														1			13.904	13.904	2	0.00016673	7338	DP690-14	145.25	120.43			0.75348	0.91645	NaN	1	0	Median	46091000	28232000	17860000	16511	377	15429	32479	78548;78549;78550	78549		3	9606
YDECLAVYR	0	1	Unmodified	1187.5281	0.5281088	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11	0											1						15.404	15.404	2	0.042375	9972	DP690-11	98.299	59.337			NaN	NaN	NaN	0	0	Median	0	0	0	16512	288	15430	32480	78551	78551		1	9606
YDEELEGERPHSFR	0	2	Unmodified	1762.7911	0.79107644	172	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	1	11	0											1						12.817	12.817	3	0.036809	6187	DP690-11	53.034	28.16			0.69932	0.86206	NaN	1	0	Median	75926000	42433000	33493000	16513	172	15431	32481	78552;78553	78552		2	9606
YDEFHDYLER	0	1	Unmodified	1385.5888	0.58879481	1887	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	3	0			2														15.857	15.857	2;3	0.00989	9842	DP690-3	108.57	65.487			11.619	13.401	NaN	1	0	Median	28708000	2042600	26666000	16514	1887	15432	32482;32483	78554;78555;78556	78556		3	9606
YDENMVLVSLLK	1	0	Oxidation (M)	1438.7378	0.73776723	318	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	1	0	4	0				1													20.948	20.948	2	0.00051019	15795	DP690-4	118.28	94.289			0.74763	0.80247	NaN	1	0	Median	4786500	2670300	2116200	16515	318	15433	32484	78557;78558;78559;78560	78559	327	4	9606
YDFGIYDDDPEIITLER	0	1	Unmodified	2072.9579	0.957867	1613	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	7	4			1								1						22.019	22.019	2	2.0644E-18	19261	DP690-11	203.74	167.3			NaN	NaN	NaN	0	0	Median	60482000	59076000	1406100	16516	1613	15434	32485;32486	78561;78562;78563;78564	78561		4	9606
YDGHQQFFAIVQLIGTR	0	1	Unmodified	1992.0217	0.02174508	1599	Q8IUQ4	SIAH1	E3 ubiquitin-protein ligase SIAH1	yes	yes	0	0	0	14	0														2			21.975	21.975	3	0.006237	18093	DP690-14	89.913	52.756			NaN	NaN	NaN	0	0	Median	8338200	4739700	3598500	16517	1599	15435	32487;32488	78565;78566	78565		2	9606
YDGIILPGK	1	0	Unmodified	974.54368	0.54368251	1006	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	15	0															1		16.383	16.383	2	0.0024253	10734	DP690-15	110.31	84.371			0.87121	0.94098	NaN	1	0	Median	261630000	137190000	124430000	16518	1006	15436	32489	78567;78568;78569;78570	78570		4	9606
YDGNHIPGSPLQFYVDAINSR	0	1	Unmodified	2362.1342	0.13420866	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	6	4		1								1							21.276	21.276	3	1.0232E-06	18365	DP690-10	108.96	86.387			0.93273	1.0569	19.078	2	0	Median	117290000	55177000	62109000	16519	1270	15437	32490;32491	78571;78572;78573;78574;78575;78576	78571		6	9606
YDGQVAVFGSDLQEK	1	0	Unmodified	1654.7839	0.7838658	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														17.438	17.438	2	9.2815E-10	11843	DP690-3	203.88	180.16			0.7922	0.83325	NaN	1	0	Median	44570000	24207000	20362000	16520	561	15438	32492	78577;78578	78578		2	9606
YDHGTFFPMGDEGASSQIGR	0	1	Oxidation (M)	2186.9327	0.93273166	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	1	0	3	0.707		1	2	1													15.787	15.787	2;3	5.3752E-30	9715	DP690-3	233.28	225.03			0.73765	0.76324	6.9611	4	0	Linear	908690000	515980000	392700000	16521	2316	15439	32493;32494;32495;32496	78579;78580;78581;78582;78583;78584;78585;78586;78587;78588;78589;78590;78591;78592	78589	2768	14	9606
YDHGTFFPMGDEGASSQIGR	0	1	Unmodified	2170.9378	0.93781703	2316	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	3	0			3														17.319	17.319	2;3	2.871E-14	11622	DP690-3	185.96	177.62			0.739	0.75948	NaN	1	0	Median	180660000	101180000	79487000	16522	2316	15439	32497;32498;32499	78593;78594;78595;78596;78597;78598;78599	78594		7	9606
YDIDLPNKK	2	0	Unmodified	1104.5815	0.58152458	75	O00244	ATOX1	Copper transport protein ATOX1	yes	yes	0	0	1	8	0								1									13.21	13.21	2	0.0016486	6054	DP690-8	135.77	114.79			0.80891	0.92209	NaN	1	0	Median	24569000	13220000	11349000	16523	75	15440	32500	78600;78601;78602;78603	78603		4	9606
YDLEQGLGDLLTER	0	1	Unmodified	1620.7995	0.79951586	1448	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	11	0											1						22.534	22.534	2	0.01211	19981	DP690-11	120.55	72.845			NaN	NaN	NaN	0	0	Median	10086000	10086000	0	16524	1448	15441	32501	78604	78604		1	9606
YDLLCLEGLVR	0	1	Unmodified	1349.7013	0.70132214	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	8.33	3.3				1					1			1					22.012	22.012	2	0.00011385	18352	DP690-12	177.7	177.7			0.87686	1.0128	14.357	2	0	Median	153060000	75735000	77327000	16525	2210	15442	32502;32503;32504	78605;78606;78607;78608;78609;78610;78611;78612;78613;78614	78608		10	9606
YDLLIPQFR	0	1	Unmodified	1163.6339	0.63389451	2306	Q9P2K8	EIF2AK4	Eukaryotic translation initiation factor 2-alpha kinase 4	yes	yes	0	0	0	10	0										1							20.547	20.547	2	0.014945	17503	DP690-10	84.568	61.525			0.86895	1.0884	NaN	1	0	Median	41711000	24620000	17091000	16526	2306	15443	32505	78615;78616;78617	78616		3	9606
YDNMAELFAVVK	1	0	Oxidation (M)	1414.6803	0.68025235	2366	Q9UK41	VPS28	Vacuolar protein sorting-associated protein 28 homolog	yes	yes	0	1	0	15	0															1		18.563	18.563	2	0.0089328	13345	DP690-15	84.658	70.965			0.97536	1.1499	NaN	1	0	Median	13375000	6959400	6415200	16527	2366	15444	32506	78618;78619	78619	2802	2	9606
YDPQKEAELR	1	1	Unmodified	1247.6146	0.61461563	1934	Q99439	CNN2	Calponin-2	yes	yes	0	0	1	8.67	3.77						2								1			11.746	11.746	2;3	0.014803	4361	DP690-14	68.626	36.296			0.46977	0.55676	39.504	2	0	Median	47368000	34104000	13264000	16528	1934	15445	32507;32508;32509	78620;78621;78622;78623;78624	78621		5	9606
YDPTIEDFYR	0	1	Unmodified	1317.5877	0.58773217	945;2476	Q9Y3L5;P10114;P61225	RAP2C;RAP2A;RAP2B	Ras-related protein Rap-2c;Ras-related protein Rap-2a;Ras-related protein Rap-2b	no	no	0	0	0	16	0																1	18.503	18.503	2	6.7022E-05	12901	DP690-16	166.52	152.94			0.68335	0.79475	NaN	1	0	Median	17576000	9822200	7754000	16529	2476;945	15446	32510	78625;78626	78626		2	9606
YDPTIEDSYR	0	1	Unmodified	1257.5513	0.55134667	944	P61224;P62834;A6NIZ1	RAP1B;RAP1A	Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein	yes	no	0	0	0	15	0															1		14.679	14.679	2	6.7022E-05	8322	DP690-15	166.52	147.41			0.73176	0.83109	NaN	1	0	Median	48975000	28461000	20513000	16530	944	15447	32511	78627;78628;78629;78630	78627		4	9606
YDPTIEDSYRK	1	1	Unmodified	1385.6463	0.64630969	944	P61224;P62834	RAP1B;RAP1A	Ras-related protein Rap-1b;Ras-related protein Rap-1A	yes	no	0	0	1	15	0															2		12.777	12.777	2;3	0.00039921	5739	DP690-15	143.37	114.29			0.72965	0.84467	13.388	2	0	Median	52733000	31774000	20959000	16531	944	15448	32512;32513	78631;78632;78633;78634;78635;78636;78637;78638;78639	78634		9	9606
YDSAPATDGSGTALGWTVAWK	1	0	Unmodified	2153.0065	0.006548526	58	CON__Streptavidin			yes	yes	0	0	0	7	1.63					1		1		1								20.458	20.458	2	4.3612E-05	15456	DP690-9	153.14	110.71		+	NaN	NaN	NaN	0	0	Median	18747000	18747000	0	16532	58	15449	32514;32515;32516	78640;78641;78642;78643;78644	78644		5	
YDSFIELQEK	1	0	Unmodified	1270.6081	0.60813326	2210	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	8	4				1								1					17.264	17.264	2	1.1092E-06	12167	DP690-12	171.99	89.562			0.71202	0.78166	NaN	1	0	Median	84806000	78575000	6231100	16533	2210	15450	32517;32518	78645;78646;78647;78648	78645		4	9606
YDSYESCDSR	0	1	Unmodified	1280.4615	0.46154538	2397	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	yes	yes	0	0	0	11	0											1						10.947	10.947	2	0.0029405	3521	DP690-11	96.034	96.034			0.93057	1.1428	NaN	1	0	Median	14940000	8244400	6695200	16534	2397	15451	32519	78649;78650;78651;78652	78650		4	9606
YDVQHLQTALR	0	1	Unmodified	1342.6993	0.69934831	109	O14653	GOSR2	Golgi SNAP receptor complex member 2	yes	yes	0	0	0	15	0															2		14.915	14.915	2;3	0.014485	8633	DP690-15	79.201	66.847			0.85229	0.96493	14.163	2	0	Median	101090000	52671000	48415000	16535	109	15452	32520;32521	78653;78654;78655	78654		3	9606
YDWDLLAAR	0	1	Unmodified	1121.5506	0.55055881	1314	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	11	0											1						19.976	19.976	2	0.037403	16535	DP690-11	91.318	22.142			NaN	NaN	NaN	0	0	Median	22690000	22690000	0	16536	1314	15453	32522	78656	78656		1	9606
YDYCDIPECEDK	1	0	Unmodified	1605.5963	0.5963243	39	CON__P06868			yes	yes	0	0	0	12	0												1					15.335	15.335	2	0.014785	9428	DP690-12	101.39	74.064		+	NaN	NaN	NaN	0	0	Median	13363000	13363000	0	16537	39	15454	32523	78657;78658	78657		2	9606
YDYNSGEELESYK	1	0	Unmodified	1595.6627	0.66274761	2474	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	10	4						1								1			15.622	15.622	2	2.5347E-08	9700	DP690-14	204.56	188.97			1.114	1.306	11.916	2	0	Median	116380000	56381000	59996000	16538	2474	15455	32524;32525	78659;78660;78661;78662;78663;78664;78665;78666	78660		8	9606
YEAAFPFLSPCGR	0	1	Unmodified	1513.7024	0.70238478	1490	Q6P1X6	C8orf82	UPF0598 protein C8orf82	yes	yes	0	0	0	11	4							1								1		20.415	20.415	2	0.00053056	15697	DP690-15	108.47	87.633			0.65054	0.75498	2.4072	2	0	Median	19211000	11558000	7652900	16539	1490	15456	32526;32527	78667;78668;78669;78670;78671;78672;78673;78674	78669		8	9606
YEAAGTLVTLSSAPTAIK	1	0	Unmodified	1791.9618	0.96183016	877	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	7	4			1								1						18.395	18.395	2	2.6209E-13	14300	DP690-11	190.57	168.24			1.535	1.7042	97.364	2	0	Median	178690000	89034000	89651000	16540	877	15457	32528;32529	78675;78676;78677;78678;78679;78680;78681	78677		7	9606
YEDFSNLGTTHLLR	0	1	Unmodified	1664.8158	0.81583463	565	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	12.8	2.94					1								5	1	1	1	19.417	19.417	2;3	2.2446E-15	11834	DP690-13	245.13	208.54			0.78619	0.89734	5.8459	5	0	Median	3421099999.9999995	1872899999.9999998	1548299999.9999998	16541	565	15458	32530;32531;32532;32533;32534;32535;32536;32537;32538	78682;78683;78684;78685;78686;78687;78688;78689;78690;78691;78692;78693;78694;78695;78696;78697;78698	78686		17	9606
YEDGIALLR	0	1	Unmodified	1048.5553	0.55530983	2363	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	12	0												1					17.577	17.577	2	0.07786	12628	DP690-12	58.782	28.975			0.91149	1.1086	NaN	1	0	Median	13260000	8020100	5240200	16542	2363	15459	32539	78699	78699		1	9606
YEDICPSTHNMDVPNIK	1	0	Oxidation (M)	2047.8979	0.89792605	1021	P63241;Q6IS14;Q9GZV4	EIF5A;EIF5AL1;EIF5A2	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2	yes	no	0	1	0	16	0																1	14.132	14.132	3	0.0013507	7393	DP690-16	77.24	59.483			0.69045	0.78761	NaN	1	0	Median	40478000	23419000	17059000	16543	1021	15460	32540	78700;78701;78702;78703	78700	1549	4	9606
YEDMAAFMK	1	0	2 Oxidation (M)	1136.4518	0.45183232	641	P31947	SFN	14-3-3 protein sigma	yes	yes	0	2	0	7	0							1										12.124	12.124	2	0.051361	4733	DP690-7	71.877	52.774			1.4696	1.5968	NaN	1	0	Median	21540000	8427400	13113000	16544	641	15461	32541	78704;78705;78706	78705		3	9606
YEEIDNAPEER	0	1	Unmodified	1363.5892	0.58918874	793	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	13	0													1				12.771	12.771	2	8.7281E-05	5669	DP690-13	169.41	145.38			0.78722	0.95681	NaN	1	0	Median	49699000	25707000	23992000	16545	793	15462	32542	78707;78708;78709;78710;78711;78712	78711		6	9606
YEEIVKEVSTYIK	2	0	Unmodified	1599.8396	0.83958976	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	13.3	0.471													2	1			18.225	18.225	2;3	1.5411E-09	13138	DP690-13	210.15	165.54			0.90601	0.99823	5.2783	3	0	Median	474440000	250280000	224170000	16546	1031	15463	32543;32544;32545	78713;78714;78715;78716;78717;78718;78719;78720;78721;78722	78716		10	9606
YEELQITAGR	0	1	Unmodified	1178.5932	0.5931519	369;368	P04264;CON__P04264;P04259	KRT1;KRT6B	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6B	no	no	0	0	0	5.67	3.4	1	1	1	1	1		1	1	1			1					15.051	15.051	2	2.8019E-23	6589	DP690-1	214.96	129.9		+	NaN	NaN	NaN	0	0	Median	766600000	766600000	0	16547	369;368	15464	32546;32547;32548;32549;32550;32551;32552;32553;32554	78723;78724;78725;78726;78727;78728;78729;78730;78731;78732;78733;78734;78735;78736;78737;78738;78739;78740;78741	78724		19	9606
YEELQQTAGR	0	1	Unmodified	1193.5677	0.56766543	43	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	2	1	1		1														11.807	11.807	2	4.2919E-16	3638	DP690-1	204.36	138.29		+	NaN	NaN	NaN	0	0	Median	14229000	14229000	0	16548	43	15465	32555;32556	78742;78743;78744;78745;78746	78742		5	9606
YEELQSLAGK	1	0	Unmodified	1136.5714	0.57135383	38	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	13	0													1				14.921	14.921	2	3.8206E-10	8693	DP690-13	180.45	23.942		+	NaN	NaN	NaN	0	0	Median	107570000	107570000	0	16549	38	15466	32557	78747;78748	78748		2	9606
YEELQVTVGR	0	1	Unmodified	1192.6088	0.60880197	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	4	3.08	1	1		1					1								15.296	15.296	2	8.2837E-16	6837	DP690-1	198.65	116.86		+	NaN	NaN	NaN	0	0	Median	72308000	72308000	0	16550	44	15467	32558;32559;32560;32561	78749;78750;78751;78752;78753;78754;78755;78756	78750		8	9606
YEEMYPPEIGDFAFVTDNTYTK	1	0	Oxidation (M)	2645.152	0.15195171	491	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	1	0	13	0													1				21.77	21.77	2	4.8089000000000005E-29	17711	DP690-13	221.59	198.13			0.78337	0.89261	NaN	1	0	Median	9467600	4809400	4658100	16551	491	15468	32562	78757;78758;78759;78760	78760	621	4	9606
YEESEVISLPFLDQLVSTLVGLLSPHNPALAAAALDYR	0	1	Unmodified	4111.1518	0.15176279	2178	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	yes	yes	0	0	0	13	0													1				30.238	30.238	3	0.0023386	25555	DP690-13	43.896	38.712			0.57994	0.70155	NaN	1	0	Median	9184300	5753900	3430500	16552	2178	15469	32563	78761	78761		1	9606
YEGFFGLYR	0	1	Unmodified	1150.5447	0.54474515	2359;274	O75746;Q9UJS0	SLC25A12;SLC25A13	Calcium-binding mitochondrial carrier protein Aralar1;Calcium-binding mitochondrial carrier protein Aralar2	no	no	0	0	0	12	0												3					20.047	20.047	2	0.00033379	15756	DP690-12	158.36	124.35			0.70169	0.82393	22.717	2	0	Median	179070000	118370000	60708000	16553	274;2359	15470	32564;32565;32566	78762;78763;78764;78765;78766;78767	78763		6	9606
YEGFFSLWK	1	0	Unmodified	1175.5651	0.56514624	1101	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	15	0															1		21.875	21.875	2	0.02023	17254	DP690-15	102.51	56.562			NaN	NaN	NaN	0	0	Median	549320	0	549320	16554	1101	15471	32567	78768	78768		1	9606
YEGILYTIDTENSTVALAK	1	0	Unmodified	2100.0627	0.062666421	1683	Q8ND56	LSM14A	Protein LSM14 homolog A	yes	yes	0	0	0	12	0												2					20.37	20.37	2	0.022099	16371	DP690-12	97.203	62.086			NaN	NaN	NaN	0	0	Median	0	0	0	16555	1683	15472	32568;32569	78769;78770	78770		2	9606
YEHDDIVSTVSVLSSGTQAVSGSK	1	0	Unmodified	2465.1922	0.19217704	1976	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	6	0						1											18.564	18.564	3	1.9244E-10	12393	DP690-6	154.08	133.78			3.4621	3.9798	NaN	1	0	Median	11520000	2529300	8991100	16556	1976	15473	32570	78771;78772;78773	78772		3	9606
YEIDLDTSDHAHLEHITR	0	1	Unmodified	2164.0185	0.018510196	415	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	3	0			1														14.746	14.746	4	0.00011384	8311	DP690-3	104.44	89.402			0.96909	1.0715	NaN	1	0	Median	44998000	21482000	23516000	16557	415	15474	32571	78774;78775;78776;78777	78774		4	9606
YEIDTGEETK	1	0	Unmodified	1183.5245	0.52446322	1147	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	12	0												1					12.884	12.884	2	0.067972	6043	DP690-12	83.783	43.716			NaN	NaN	NaN	0	0	Median	25025000	25025000	0	16558	1147	15475	32572	78778	78778		1	9606
YEIEETETVTK	1	0	Unmodified	1340.6347	0.63474195	1119	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	11.5	0.5											1	1					14.04	14.04	2	8.7281E-05	8003	DP690-11	166.19	129.76			0.89072	1.0106	9.2964	2	0	Median	443900000	234790000	209110000	16559	1119	15476	32573;32574	78779;78780;78781;78782;78783;78784;78785;78786	78780		8	9606
YEIKDIHVPPR	1	1	Unmodified	1365.7405	0.74048484	2365	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	1	14	0														1			15.06	15.06	3	0.034265	8981	DP690-14	55.721	38.554			0.42821	0.53839	NaN	1	0	Median	26278000	15619000	10658000	16560	2365	15477	32575	78787;78788	78787		2	9606
YEILTPNSIPK	1	0	Unmodified	1273.6918	0.69180331	668	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1															17.133	17.133	2	0.00019093	10281	DP690-2	145.46	117.6			0.97408	0.98354	NaN	1	0	Median	16766000	8375000	8390500	16561	668	15478	32576	78789	78789		1	9606
YEITFTLPPVHR	0	1	Unmodified	1471.7823	0.78234966	2071	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5.71	2.22		2	3	1	30	9	4	2	1				2	1			21.924	21.924	2;3	2.5468E-17	12280	DP690-7	203.29	145.06			68.934	68.752	33.395	12	0	Median	61386000000	868370000	60518000000	16562	2071	15479	32577;32578;32579;32580;32581;32582;32583;32584;32585;32586;32587;32588;32589;32590;32591;32592;32593;32594;32595;32596;32597;32598;32599;32600;32601;32602;32603;32604;32605;32606;32607;32608;32609;32610;32611;32612;32613;32614;32615;32616;32617;32618;32619;32620;32621;32622;32623;32624;32625;32626;32627;32628;32629;32630;32631	78790;78791;78792;78793;78794;78795;78796;78797;78798;78799;78800;78801;78802;78803;78804;78805;78806;78807;78808;78809;78810;78811;78812;78813;78814;78815;78816;78817;78818;78819;78820;78821;78822;78823;78824;78825;78826;78827;78828;78829;78830;78831;78832;78833;78834;78835;78836;78837;78838;78839;78840;78841;78842;78843;78844;78845;78846;78847;78848;78849;78850;78851;78852;78853;78854;78855;78856;78857;78858;78859;78860;78861;78862;78863;78864;78865;78866;78867;78868;78869;78870;78871;78872;78873;78874;78875;78876;78877;78878;78879;78880;78881;78882;78883;78884;78885;78886;78887;78888;78889;78890;78891;78892;78893;78894;78895;78896;78897;78898;78899;78900;78901;78902;78903;78904;78905;78906;78907;78908;78909;78910;78911;78912;78913;78914;78915;78916;78917;78918;78919;78920;78921;78922;78923;78924;78925;78926;78927;78928;78929;78930;78931;78932;78933;78934;78935;78936;78937	78922		148	9606
YEKEKFEEMIQQIK	3	0	Oxidation (M)	1857.9183	0.91825079	779	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	2	4	0				1													13.971	13.971	3	0.0021048	7161	DP690-4	81.185	81.185			1.9095	1.9428	NaN	1	0	Median	9887800	4530300	5357500	16563	779	15480	32632	78938;78939	78939	1156	2	9606
YELGRPAANTK	1	1	Unmodified	1218.6357	0.63568542	967	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	1	15	0															1		10.589	10.589	2	0.00046229	3022	DP690-15	152.54	78.874			0.96206	1.101	NaN	1	0	Median	37896000	19198000	18697000	16564	967	15481	32633	78940;78941;78942	78941		3	9606
YELISETGGSHDKR	1	1	Unmodified	1590.7638	0.76379906	1170	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	yes	no	0	0	1	11	0											3						11.324	11.324	3	0.00017263	4050	DP690-11	106.29	91.661			0.8656	0.98849	NaN	1	0	Median	139990000	71602000	68391000	16565	1170	15482	32634;32635;32636	78943;78944;78945;78946;78947;78948	78945		6	9606
YELQQLEGSSDR	0	1	Unmodified	1423.6579	0.657937	1794	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	10	0										1							15.569	15.569	2	0.0018267	10402	DP690-10	158.79	106.3			NaN	NaN	NaN	0	0	Median	75662000	75662000	0	16566	1794	15483	32637	78949;78950	78950		2	9606
YENELFLR	0	1	Unmodified	1082.5397	0.53965977	50	CON__Q9Z2K1;CON__Q3ZAW8			yes	no	0	0	0	1	0	1																17.039	17.039	2	0.0003261	8444	DP690-1	146.94	25.653		+	NaN	NaN	NaN	0	0	Median	7327800	7327800	0	16567	50	15484	32638	78951;78952	78952		2	
YENEVALR	0	1	Unmodified	992.49271	0.49270958	42	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	1.5	0.5	1	1															12.89	12.89	2	0.012209	5204	DP690-2	117.93	66.588		+	NaN	NaN	NaN	0	0	Median	21939000	21939000	0	16568	42	15485	32639;32640	78953;78954;78955	78954		3	9606
YEQGFITDPVVLSPK	1	0	Unmodified	1691.877	0.8770379	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	4	0				1													19.131	19.131	2	0.0052836	13672	DP690-4	113.99	56.202			NaN	NaN	NaN	0	0	Median	8182500	0	8182500	16569	474	15486	32641	78956;78957	78957		2	9606
YESHPVCADLQAK	1	0	Unmodified	1516.698	0.69802768	2250	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	15	0															2		11.727	11.727	2;3	6.9134E-05	4393	DP690-15	145.23	109.32			0.74023	0.848	0.97795	2	0	Median	140400000	77802000	62601000	16570	2250	15487	32642;32643	78958;78959;78960;78961;78962;78963;78964;78965	78963		8	9606
YESLELCRPVLQQGR	0	2	Unmodified	1846.936	0.93596654	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	2	0		1															15.692	15.692	3	0.0093397	8515	DP690-2	65.295	51.668			1.3149	1.3134	NaN	1	0	Median	4573100	2281400	2291700	16571	1075	15488	32644	78966;78967	78966		2	9606
YESLTDPSK	1	0	Unmodified	1038.487	0.4869555	416;409;1411	P07900;Q58FF6;P08238;Q58FF7;Q58FF8	HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P;HSP90AB2P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	7	4			1								1						12.435	12.435	2	0.00057901	5032	DP690-3	147.19	127.4			0.93937	1.0385	12.839	2	0	Median	272660000	141870000	130780000	16572	409;416;1411	15489	32645;32646	78968;78969;78970;78971;78972	78970		5	9606
YESLTDPSKLDSGK	2	0	Unmodified	1538.7464	0.74641766	416;409;1411	P07900;P08238;Q58FF7;Q58FF8	HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2	no	no	0	0	1	3	0			2														13.805	13.805	2;3	6.6843E-05	6993	DP690-3	119.17	106.61			0.944	1.0021	1.2098	2	0	Median	340720000	177110000	163610000	16573	409;416;1411	15490	32647;32648	78973;78974;78975;78976;78977;78978;78979;78980;78981;78982;78983	78978		11	9606
YESQEPLAGQESPLPLATR	0	1	Unmodified	2085.0378	0.037848654	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	10	0										3							17.744	17.744	2	2.0356E-07	13485	DP690-10	174.39	105.88			NaN	NaN	NaN	0	0	Median	22369000	22369000	0	16574	2065	15491	32649;32650;32651	78984;78985;78986	78985		3	9606
YESSALPSGQLTSLSEYASR	0	1	Unmodified	2145.0226	0.022592521	1171	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	4	0				2													18.872	18.872	2	0.0025758	13391	DP690-4	143.93	116.06			NaN	NaN	NaN	0	0	Median	0	0	0	16575	1171	15492	32652;32653	78987;78988	78988		2	9606
YESSLYSQEYSKPADVTPLNGFSEGSK	2	0	Unmodified	2982.3771	0.37707728	763	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	1	10	0										2							17.469	17.469	3	6.2641E-05	13194	DP690-10	82.627	82.627			0.61148	0.76972	NaN	1	0	Median	40692000	20519000	20173000	16576	763	15493	32654;32655	78989;78990;78991	78990		3	9606
YESSSYTDQFSR	0	1	Unmodified	1468.6107	0.61065246	1132	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	10	0										1							14.36	14.36	2	8.6895E-09	8590	DP690-10	175.93	126.84			NaN	NaN	NaN	0	0	Median	26450000	26450000	0	16577	1132	15494	32656	78992;78993	78992		2	9606
YETFISDVLQR	0	1	Unmodified	1369.6878	0.68778057	2314	Q9UBK9	UXT	Protein UXT	yes	yes	0	0	0	16	0																1	20.17	20.17	2	7.061E-05	14882	DP690-16	127.3	102.52			1.1747	1.3785	NaN	1	0	Median	4440100	2163000	2277200	16578	2314	15495	32657	78994;78995	78994		2	9606
YETGQLFLHSIFGYR	0	1	Unmodified	1829.9101	0.91006937	2446	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	14	0														1			20.877	20.877	3	0.061897	16803	DP690-14	70.47	43.822			0.66753	0.82843	NaN	1	0	Median	9301200	4845900	4455300	16579	2446	15496	32658	78996	78996		0	9606
YETLFQALDR	0	1	Unmodified	1254.6245	0.62445203	1479	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	13	0													1				20.179	20.179	2	0.024227	15676	DP690-13	97.431	61.113			NaN	NaN	NaN	0	0	Median	6046200	6046200	0	16580	1479	15497	32659	78997;78998	78997		2	9606
YEWDVAEAR	0	1	Unmodified	1137.5091	0.50908792	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	9.4	3.2			1								4						16.226	16.226	2	0.0016554	10292	DP690-3	118.74	98.957			1.193	1.2941	NaN	1	0	Median	64818000	29755000	35062000	16581	483	15498	32660;32661;32662;32663;32664	78999;79000;79001;79002;79003;79004;79005	79005		7	9606
YFAGNLASGGAAGATSLCFVYPLDFAR	0	1	Unmodified	2795.3377	0.33773584	473	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	9.33	0.471									2	1							23.29	23.29	2	2.02E-55	18616	DP690-9	261.06	228.05			0.78747	0.98244	1.1146	3	0	Plateau	42036000	23430000	18605000	16582	473	15499	32665;32666;32667	79006;79007;79008;79009;79010;79011;79012;79013	79008		8	9606
YFCENCQSK	1	0	Unmodified	1234.4747	0.47469303	1572	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	11	0											1						10.928	10.928	2	0.014357	3490	DP690-11	85.161	82.481			0.88137	1.0881	NaN	1	0	Median	13630000	6225900	7404300	16583	1572	15500	32668	79014	79014		1	9606
YFDGSGGNNHAVEHYR	0	1	Unmodified	1821.7819	0.78190874	746	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	3	0			2														11.178	11.178	3;4	2.4555E-06	3701	DP690-3	128.85	119.15			0.84141	0.94096	4.5098	2	0	Median	79718000	43146000	36572000	16584	746	15501	32669;32670	79015;79016;79017;79018;79019;79020;79021;79022;79023;79024;79025;79026	79026		12	9606
YFEGVSPK	1	0	Unmodified	925.45453	0.45453316	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	10	0										1							13.43	13.43	2	0.06033	7201	DP690-10	95.352	60.647			NaN	NaN	NaN	0	0	Median	0	0	0	16585	1046	15502	32671	79027	79027		1	9606
YFEITDESPYVHYLNTFSSK	1	0	Unmodified	2439.1271	0.12705759	2395	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	12.2	1.3										1			3				20.667	20.667	2;3	8.3146E-18	16301	DP690-13	197.38	197.38			1.0001	1.1307	25.732	2	0	Median	178910000	108090000	70814000	16586	2395	15503	32672;32673;32674;32675	79028;79029;79030;79031;79032;79033;79034;79035	79031		8	9606
YFEITEEPPYIHFLNTFTSK	1	0	Unmodified	2475.1998	0.1998286	1980	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	12	0												1					23.022	23.022	3	0.053019	19633	DP690-12	60.564	44.058			NaN	NaN	NaN	0	0	Median	1094000	1094000	0	16587	1980	15504	32676	79036	79036		1	9606
YFFFDDGNGLK	1	0	Unmodified	1321.5979	0.59790293	933	P61009	SPCS3	Signal peptidase complex subunit 3	yes	yes	0	0	0	15	0															1		20.3	20.3	2	9.6253E-05	15497	DP690-15	140.35	107.6			0.75614	0.89138	NaN	1	0	Median	9352400	5240600	4111800	16588	933	15505	32677	79037;79038;79039;79040	79037		4	9606
YFFYSSGEK	1	0	Unmodified	1126.4971	0.49712625	811;810	P49841;P49840	GSK3B;GSK3A	Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha	no	no	0	0	0	13	0													1				16.148	16.148	2	0.0007013	10337	DP690-13	139.88	120.1			0.96656	1.0951	NaN	1	0	Median	129710000	60863000	68843000	16589	811;810	15506	32678	79041;79042	79041		2	9606
YFHPPAHLQAK	1	0	Unmodified	1307.6775	0.67749065	2197	Q9NR56;Q5VZF2	MBNL1;MBNL2	Muscleblind-like protein 1;Muscleblind-like protein 2	yes	no	0	0	0	13.5	0.5													1	1			10.966	10.966	3	0.00068512	3349	DP690-13	97.965	76.933			0.68172	0.80827	32.025	2	0	Median	106890000	58406000	48485000	16590	2197	15507	32679;32680	79043;79044;79045;79046;79047;79048;79049;79050	79043		8	9606
YFIHYSGWNK	1	0	Unmodified	1313.6193	0.61930707	2323	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	yes	yes	0	0	0	14	0														1			15.583	15.583	3	0.017908	9652	DP690-14	63.426	38.927			0.76348	0.92811	NaN	1	0	Median	36564000	19606000	16958000	16591	2323	15508	32681	79051	79051		1	9606
YFLHTGHLTIAGCK	1	0	Unmodified	1616.8133	0.81333221	797	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	7	4			1								1						14.238	14.238	3	4.7824E-05	7648	DP690-3	120.59	99.495			0.98932	1.0213	NaN	1	0	Median	91911000	46238000	45672000	16592	797	15509	32682;32683	79052;79053;79054;79055;79056	79055		5	9606
YFLVGAGAIGCELLK	1	0	Unmodified	1609.8538	0.85380004	561	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	3	0			1														21.684	21.684	2	0.0051153	17139	DP690-3	76.533	60.156			0.89645	0.94048	NaN	1	0	Median	5212200	2402900	2809300	16593	561	15510	32684	79057;79058;79059	79057		3	9606
YFNKNEDVCSCSTDTSEVPR	1	1	Unmodified	2407.0056	0.0056386025	807	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	1	10	0										1							13.456	13.456	3	0.0038136	7273	DP690-10	99.508	70.292			NaN	NaN	NaN	0	0	Median	22957000	22957000	0	16594	807	15511	32685	79060;79061	79061		2	9606
YFNPSGEPLELDSR	0	1	Unmodified	1622.7577	0.75765105	1642	Q8N1B3	FAM58A	Cyclin-related protein FAM58A	yes	yes	0	0	0	15	0															1		17.671	17.671	2	0.0018062	12394	DP690-15	92.112	73.302			0.73572	0.84846	NaN	1	0	Median	7569900	4699500	2870400	16595	1642	15512	32686	79062;79063;79064	79064		3	9606
YFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGR	0	1	Oxidation (M)	3745.7617	0.76171393	1274	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	1	0	6	0						1											19.367	19.367	3	0.0025518	13352	DP690-6	60.562	45.282			NaN	NaN	NaN	0	0	Median	2487300	2487300	0	16596	1274	15513	32687	79065;79066	79065	1957	2	9606
YFNSYTLTGR	0	1	Unmodified	1220.5826	0.58258722	1878	Q96IX5	USMG5	Up-regulated during skeletal muscle growth protein 5	yes	yes	0	0	0	16	0																1	16.184	16.184	2	0.001795	10091	DP690-16	103.55	65.243			0.91522	1.0459	NaN	1	0	Median	35755000	18709000	17046000	16597	1878	15514	32688	79067	79067		1	9606
YFPTQALNFAFK	1	0	Unmodified	1445.7343	0.73433683	381;473	P05141;Q9H0C2;P12236	SLC25A5;SLC25A31;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	11.7	2.69							1		1	2	1	1	1	1	1	1	21.084	21.084	2	6.6061E-05	18002	DP690-11	126.24	93.492			0.79047	0.91101	13.075	10	0	Median	2436900000	1347800000	1089100000	16598	381;473	15515	32689;32690;32691;32692;32693;32694;32695;32696;32697;32698	79068;79069;79070;79071;79072;79073;79074;79075;79076;79077;79078;79079;79080;79081;79082;79083;79084;79085;79086;79087;79088;79089;79090;79091;79092;79093;79094;79095;79096;79097;79098;79099;79100;79101;79102;79103;79104;79105;79106;79107;79108;79109;79110;79111;79112	79075		45	9606
YFPTQALNFAFKDK	2	0	Unmodified	1688.8562	0.85624288	381;473	P05141;Q9H0C2;P12236	SLC25A5;SLC25A31;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	1	14.5	0.5														1	1		19.083	19.083	3	0.00031253	14359	DP690-14	102.52	74.582			0.74525	0.84341	11.981	2	0	Median	97000000	55201000	41799000	16599	381;473	15516	32699;32700	79113;79114;79115;79116;79117	79113		5	9606
YFSEADKIK	2	0	Unmodified	1099.555	0.55497548	474	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	1	4	0				1													12.036	12.036	2	0.0051681	4664	DP690-4	122.19	79.273			1.3125	1.3633	NaN	1	0	Median	28198000	12375000	15823000	16600	474	15517	32701	79118;79119	79118		2	9606
YFSLKPEEKDEK	3	0	Unmodified	1511.7508	0.75077476	2501	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	2	11	0											1						11.931	11.931	3	0.0038274	4808	DP690-11	79.283	44.588			0.79646	0.8627	NaN	1	0	Median	143540000	79240000	64302000	16601	2501	15518	32702	79120;79121	79120		2	9606
YFSLPFCVGSK	1	0	Unmodified	1303.6271	0.62709457	2173	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	11.3	1.49									1	1	1	1	2				20.361	20.361	2	0.00037	17116	DP690-11	117.7	74.671			0.73821	0.9055	10.8	3	0	Plateau	120450000	68856000	51599000	16602	2173	15519	32703;32704;32705;32706;32707;32708	79122;79123;79124;79125;79126;79127;79128;79129;79130;79131	79126		10	9606
YFSSMAEFLK	1	0	Unmodified	1221.574	0.57399637	1756	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	6	0						1											13.671	13.671	2	0.06245	6435	DP690-6	60.118	10.582			0.66436	0.74887	NaN	1	0	Median	23802000	15361000	8441100	16603	1756	15520	32709	79132	79132		1	9606
YFVEAGAMAVR	0	1	Oxidation (M)	1228.591	0.59104341	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	1	0	4	0				1													14.481	14.481	2	0.034069	7833	DP690-4	88.37	38.834			NaN	NaN	NaN	0	0	Median	16297000	0	16297000	16604	520	15521	32710	79133	79133	670	1	9606
YGAATANYMEVVSLLK	1	0	Oxidation (M)	1744.8706	0.87057232	737	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	1	0	8	4				1								1					20.421	20.421	2	0.0015257	15209	DP690-4	96.067	81.81			0.91251	1.0391	11.724	2	0	Median	14638000	7359400	7278800	16605	737	15522	32711;32712	79134;79135;79136;79137;79138;79139	79139	1090	6	9606
YGALALQEIFDGIQPK	1	0	Unmodified	1761.9301	0.93013611	892	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			3														22.9	22.9	2	0.00068128	18509	DP690-3	150.09	104.32			NaN	NaN	NaN	0	0	Median	6346400	6346400	0	16606	892	15523	32713;32714;32715	79140;79141;79142;79143	79143		4	9606
YGCEGPSHGGLPGASSEK	1	0	Unmodified	1788.7737	0.77371182	1076	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	3	0			1														11.468	11.468	3	1.8185E-05	3951	DP690-3	123.92	96.273			0.77416	0.83216	NaN	1	0	Median	16918000	9563000	7354600	16607	1076	15524	32716	79144;79145;79146;79147	79146		4	9606
YGCLAGVR	0	1	Unmodified	894.43817	0.43817159	2298	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	14	0														1			12.726	12.726	2	0.010737	5638	DP690-14	119.22	74.61			NaN	NaN	NaN	0	0	Median	33375000	33375000	0	16608	2298	15525	32717	79148;79149	79148		2	9606
YGDGGSSFQSTTGHCVHMR	0	1	Oxidation (M)	2098.8585	0.85852086	901	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	1	0	13.5	0.866													3		1		10.942	10.942	3;4	1.5059E-06	2884	DP690-13	130.02	124.83			0.91127	1.0541	18.348	4	0	Median	1047899999.9999999	558720000	489210000	16609	901	15526	32718;32719;32720;32721	79150;79151;79152;79153;79154;79155;79156;79157;79158;79159;79160;79161;79162;79163;79164	79156	1400	15	9606
YGDGGSSFQSTTGHCVHMR	0	1	Unmodified	2082.8636	0.86360623	901	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	0	13	0													1				12.03	12.03	4	0.00011998	4735	DP690-13	102.08	102.08			0.83088	0.92201	NaN	1	0	Median	400870000	211480000	189380000	16610	901	15526	32722	79165;79166;79167;79168	79167		4	9606
YGDGGSTFQSTTGHCVHMR	0	1	Oxidation (M)	2112.8742	0.87417092	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	11.4	4.14					2								2	1	2		10.714	10.714	3;4	5.4526E-10	3035	DP690-13	151.11	138.91			0.89234	0.94042	13.98	6	0	Median	2047999999.9999998	1096200000	951740000	16611	639	15527	32723;32724;32725;32726;32727;32728;32729	79169;79170;79171;79172;79173;79174;79175;79176;79177;79178;79179;79180;79181;79182;79183;79184;79185;79186;79187;79188;79189;79190;79191;79192;79193;79194;79195;79196;79197;79198	79177	893	30	9606
YGDGGSTFQSTTGHCVHMR	0	1	Unmodified	2096.8793	0.8792563	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	13	0													2				12.257	12.257	3;4	1.2757000000000001E-33	4943	DP690-13	265.64	250.71			0.84187	0.91065	1.7396	2	0	Median	1616899999.9999998	863040000	753860000	16612	639	15527	32730;32731	79199;79200;79201;79202;79203;79204;79205;79206;79207	79200		9	9606
YGDSEFTVQSTTGHCVHMR	0	1	Oxidation (M)	2226.9423	0.94225048	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	10.9	4.23					3								3	1	2		12.612	12.612	3;4	3.9069E-08	5179	DP690-13	144.15	134.66			0.90925	1.0157	8.9284	7	0	Median	3338199999.9999995	1714699999.9999998	1623499999.9999998	16613	856	15528	32732;32733;32734;32735;32736;32737;32738;32739;32740	79208;79209;79210;79211;79212;79213;79214;79215;79216;79217;79218;79219;79220;79221;79222;79223;79224;79225;79226;79227;79228;79229;79230;79231;79232;79233;79234	79216	1301	27	9606
YGDSEFTVQSTTGHCVHMR	0	1	Unmodified	2210.9473	0.94733586	856	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	9.17	4.18					3								2	1			13.575	13.575	3;4	5.4138E-23	6749	DP690-13	219.53	209.34			0.90533	0.93218	10.624	3	0	Plateau	2094699999.9999998	1102400000	992290000	16614	856	15528	32741;32742;32743;32744;32745;32746	79235;79236;79237;79238;79239;79240;79241;79242;79243;79244;79245;79246;79247;79248;79249;79250	79241		16	9606
YGEPGEVFINK	1	0	Unmodified	1251.6136	0.61355299	566	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	11	0											1						15.843	15.843	2	0.00013733	10638	DP690-11	125.16	100.28			0.75087	0.84908	NaN	1	0	Median	206920000	122570000	84348000	16615	566	15529	32747	79251;79252;79253;79254;79255	79252		5	9606
YGEVEEMNVCDNLGDHLVGNVYVK	1	0	Oxidation (M)	2768.2422	0.24218048	1079	Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	yes	0	1	0	14	0														1			18.02	18.02	3	0.00018184	12984	DP690-14	109.05	94.264			0.9551	1.1549	NaN	1	0	Median	79912000	41220000	38692000	16616	1079	15530	32748	79256	79256	1689	1	9606
YGEVEEMNVCDNLGDHLVGNVYVK	1	0	Unmodified	2752.2473	0.24726586	1079	Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	yes	0	0	0	14	0														1			18.877	18.877	3	0.0028947	14150	DP690-14	85.969	61.873			NaN	NaN	NaN	0	0	Median	16177000	0	16177000	16617	1079	15530	32749	79257;79258	79257		2	9606
YGEYFPGTGDLR	0	1	Unmodified	1373.6252	0.62518031	1222;1788	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	0	8	4				1								1					17.349	17.349	2	0.0002045	12268	DP690-12	182.65	170.42			0.72965	0.827	5.5428	2	0	Median	330720000	192150000	138570000	16618	1222;1788	15531	32750;32751	79259;79260;79261;79262;79263;79264;79265	79260		7	9606
YGFEPTQEGK	1	0	Unmodified	1154.5244	0.52440364	1616	Q8IXM3	MRPL41	39S ribosomal protein L41, mitochondrial	yes	yes	0	0	0	16	0																1	13.477	13.477	2	0.00052985	6515	DP690-16	117.81	88.893			0.75413	0.87803	NaN	1	0	Median	25009000	13749000	11260000	16619	1616	15532	32752	79266;79267	79266		2	9606
YGFLWPGLNVPLMK	1	0	Unmodified	1633.8691	0.86905617	1053	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	0	0	14	0														1			23.874	23.874	2	0.0019703	20355	DP690-14	91.584	77.921			0.67626	0.7967	NaN	1	0	Median	5701100	3716100	1985000	16620	1053	15533	32753	79268;79269	79268		2	9606
YGGDEIPFSPYR	0	1	Unmodified	1399.6408	0.64083038	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9	3.21		1							1	1	3						18.084	18.084	2	1.9702E-09	13836	DP690-10	237.44	28.231			0.7098	0.70115	10.468	3	0	Plateau	2614600000	1503499999.9999998	1111100000	16621	549	15534	32754;32755;32756;32757;32758;32759	79270;79271;79272;79273;79274;79275;79276;79277;79278;79279;79280;79281;79282;79283;79284;79285;79286;79287;79288	79271		19	9606
YGGELVPHFPAR	0	1	Unmodified	1341.683	0.68296996	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	7	3.56		1							1	1							15.762	15.762	3	0.0083676	10628	DP690-10	69.721	38.124			0.67497	0.74983	9.5677	3	0	Plateau	564630000	350470000	214160000	16622	250	15535	32760;32761;32762	79289;79290;79291;79292;79293	79291		5	9606
YGGPNHIVGSPFK	1	0	Unmodified	1371.6935	0.69353465	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										4							13.942	13.942	2;3	0.014687	7988	DP690-10	61.03	61.03			0.65855	0.79082	11.609	2	0	Median	389730000	190980000	198750000	16623	250	15536	32763;32764;32765;32766	79294;79295;79296;79297;79298	79294		5	9606
YGGPQHIVGSPFK	1	0	Unmodified	1385.7092	0.70918471	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										2							14.075	14.075	2;3	0.00077422	8123	DP690-10	112.13	71.629			0.80262	0.94618	4.6656	2	0	Median	593550000	321060000	272490000	16624	1270	15537	32767;32768	79299;79300;79301;79302;79303;79304;79305	79303		7	9606
YGGPYHIGGSPFK	1	0	Unmodified	1378.667	0.66698555	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8.86	2.9		1							2	2	2						14.863	14.863	2;3	7.2019E-05	9203	DP690-11	133.81	76.258			0.73145	0.80086	21.452	6	0	Median	3121999999.9999995	1876899999.9999998	1245000000	16625	549	15538	32769;32770;32771;32772;32773;32774;32775	79306;79307;79308;79309;79310;79311;79312;79313;79314;79315;79316;79317;79318;79319;79320;79321;79322;79323;79324;79325;79326;79327;79328	79318		23	9606
YGGQPVPNFPSK	1	0	Unmodified	1289.6404	0.64043645	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	8	3.54		1							1	1	1						14.692	14.692	2	9.9879E-08	8948	DP690-10	202.2	175.07			0.6519	0.6478	9.0361	4	0	Linear	2495300000	1487099999.9999998	1008199999.9999999	16626	549	15539	32776;32777;32778;32779	79329;79330;79331;79332;79333;79334;79335;79336;79337;79338;79339;79340;79341;79342;79343;79344;79345	79332		17	9606
YGIDKDKVDK	3	0	Unmodified	1179.6136	0.61355299	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	2	11	0											1						10.407	10.407	3	0.013691	2668	DP690-11	96.665	43.576			NaN	NaN	NaN	0	0	Median	0	0	0	16627	1267	15540	32780	79346	79346		1	9606
YGIICMEDLIHEIYTVGK	1	0	Oxidation (M)	2169.0486	0.048613037	525	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	1	0	15	0															1		20.864	20.864	3	4.8637E-05	16115	DP690-15	119.47	119.47			0.83535	0.98473	NaN	1	0	Median	9340500	4635100	4705400	16628	525	15541	32781	79347;79348;79349;79350	79350	675	4	9606
YGINTDPPK	1	0	Unmodified	1003.4975	0.4974606	2462	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	16	0																1	12.668	12.668	2	0.010602	5583	DP690-16	88.948	55.432			0.62793	0.69473	NaN	1	0	Median	83076000	51032000	32044000	16629	2462	15542	32782	79351;79352	79351		2	9606
YGISSMIQSQEKPDR	1	1	Oxidation (M)	1753.8305	0.83049842	495	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	1	1	4	0				1													12.712	12.712	3	8.2256E-06	5511	DP690-4	142.39	121.14			0.92479	1.0547	NaN	1	0	Median	24090000	12300000	11790000	16630	495	15543	32783	79353	79353	632	1	9606
YGLFPANYVELR	0	1	Unmodified	1440.7402	0.74015049	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	11	0											1						20.405	20.405	2	0.00037647	17098	DP690-11	117.02	84.804			0.71171	0.85585	NaN	1	0	Median	71676000	40588000	31088000	16631	1267	15544	32784	79354;79355;79356	79354		3	9606
YGLFPANYVELRQ	0	1	Unmodified	1568.7987	0.798728	1267	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	1	11	0											1						20.03	20.03	2	0.00030222	16612	DP690-11	121.9	104.73			0.91368	1.1006	NaN	1	0	Median	105700000	49160000	56538000	16632	1267	15545	32785	79357;79358;79359;79360	79357		4	9606
YGLIYHASLVGQTSPK	1	0	Unmodified	1732.9148	0.91482039	2450	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	12	0												1					15.651	15.651	3	0.011061	9899	DP690-12	88.108	60.17			NaN	NaN	NaN	0	0	Median	31487000	31487000	0	16633	2450	15546	32786	79361	79361		1	9606
YGMPPQDAFTTQWLVR	0	1	Oxidation (M)	1924.9142	0.91416847	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	0	10	0										1							20.071	20.071	2	0.00034757	16885	DP690-10	116.54	95.238			0.75955	0.9512	NaN	1	0	Median	40647000	22921000	17726000	16634	1297	15547	32787	79362;79363	79363	1987	2	9606
YGMPPQDAFTTQWLVR	0	1	Unmodified	1908.9193	0.91925384	1297	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	10	0										1							21.05	21.05	2	0.067503	18152	DP690-10	85.554	44.674			NaN	NaN	NaN	0	0	Median	0	0	0	16635	1297	15547	32788	79364	79364		1	9606
YGMWHFLLGDK	1	0	Oxidation (M)	1381.6489	0.64889264	314	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	1	0	14	0														1			18.196	18.196	3	0.0041887	13232	DP690-14	78.342	59.532			0.79182	0.96307	NaN	1	0	Median	46161000	28367000	17794000	16636	314	15548	32789	79365;79366;79367;79368	79367	324	4	9606
YGMWHFLLGDK	1	0	Unmodified	1365.654	0.65397802	314	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	14	0														1			19.992	19.992	3	0.0043151	15564	DP690-14	75.229	56.129			0.76012	0.92487	NaN	1	0	Median	42949000	21209000	21740000	16637	314	15548	32790	79369;79370;79371;79372	79371		4	9606
YGPADVEDTTGSGATDSK	1	0	Unmodified	1769.7592	0.75916719	575	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	15	0															1		13.82	13.82	2	7.7515E-10	7054	DP690-15	156	118.66			0.78842	0.93062	NaN	1	0	Median	25318000	13386000	11932000	16638	575	15549	32791	79373;79374;79375;79376	79375		4	9606
YGPMEEPLVIEK	1	0	Oxidation (M)	1419.6956	0.69556806	686	P36969	GPX4	Phospholipid hydroperoxide glutathione peroxidase, mitochondrial	yes	yes	0	1	0	12	4								1								1	15.894	15.894	2	0.0024006	9651	DP690-16	100.69	46.621			0.80181	0.92296	18.614	2	0	Median	35589000	19913000	15676000	16639	686	15550	32792;32793	79377;79378;79379;79380;79381	79378	990	5	9606
YGPMEEPLVIEKDLPHYF	1	0	Oxidation (M)	2192.05	0.049993245	686	P36969	GPX4	Phospholipid hydroperoxide glutathione peroxidase, mitochondrial	yes	yes	0	1	1	16	0																1	20.399	20.399	3	0.00068734	15200	DP690-16	84.14	73.374			0.72544	0.84821	NaN	1	0	Median	6062500	3671400	2391100	16640	686	15551	32794	79382;79383	79382	990	2	9606
YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK	1	0	Unmodified	3783.8032	0.80316804	494	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	12	0												1					18.385	18.385	4	1.0737E-07	13626	DP690-12	95.152	80.087			NaN	NaN	NaN	0	0	Median	21207000	21207000	0	16641	494	15552	32795	79384	79384		1	9606
YGQFSGLNPGGRPITPPR	0	2	Unmodified	1912.9908	0.9907793	963	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	1	10	4						1								1			15.271	15.271	3	0.0007201	8411	DP690-6	84.62	84.62			2.9709	3.34	223.64	2	0	Median	146670000	82599000	64066000	16642	963	15553	32796;32797	79385;79386;79387	79386		3	9606
YGQHPPDAVDEPQMLTNEK	1	0	Oxidation (M)	2183.9793	0.9793475	591	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	1	0	10	0										1							13.525	13.525	3	0.056172	7412	DP690-10	63.639	31.012			NaN	NaN	NaN	0	0	Median	42702000	0	42702000	16643	591	15554	32798	79388	79388		1	9606
YGQNGDFTR	0	1	Unmodified	1056.4625	0.46247208	288	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	11	0											1						11.704	11.704	2	0.0045213	4526	DP690-11	101.72	84.945			0.87992	1.0635	NaN	1	0	Median	101230000	52479000	48752000	16644	288	15555	32799	79389;79390;79391;79392;79393;79394	79389		6	9606
YGSGGGSKGGSISGGGYGSGGGK	2	0	Unmodified	1889.8504	0.85038223	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	10	6				1												1	10.354	10.354	3	5.1251E-07	2694	DP690-4	130.49	97.34		+	NaN	NaN	NaN	0	0	Median	7229800	7229800	0	16645	44	15556	32800;32801	79395;79396;79397	79396		3	9606
YGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR	0	1	Unmodified	4131.8545	0.85448792	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											1						23.419	23.419	4	0.00033633	21034	DP690-11	69.181	59.453			NaN	NaN	NaN	0	0	Median	5197100	5197100	0	16646	891	15557	32802	79398	79398		1	9606
YGVIILDEAHER	0	1	Unmodified	1413.7252	0.72522871	161	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	7	4			1								1						15.771	15.771	3	5.3801E-05	9704	DP690-3	136.96	99.813			1.2534	1.3992	NaN	1	0	Median	37525000	16265000	21261000	16647	161	15558	32803;32804	79399;79400;79401;79402;79403;79404	79404		6	9606
YGVNPGPIVGTTR	0	1	Unmodified	1329.7041	0.70409934	723	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	12.2	0.829											1	1	2				15.015	15.015	2	0.0011871	8714	DP690-13	100.88	100.88			0.68396	0.82186	21.318	4	0	Median	440980000	265440000	175530000	16648	723	15559	32805;32806;32807;32808	79405;79406;79407;79408;79409;79410;79411	79410		7	9606
YGVSGYPTLK	1	0	Unmodified	1083.5601	0.56006086	623	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	4	0				1													15.216	15.216	2	0.063014	8790	DP690-4	59.931	41.669			0.81815	0.88379	NaN	1	0	Median	30625000	16881000	13744000	16649	623	15560	32809	79412	79412		1	9606
YGVTMEQIKR	1	1	Oxidation (M)	1239.6282	0.6281572	1600	Q8IV50;Q96S90	LYSMD2;LYSMD1	LysM and putative peptidoglycan-binding domain-containing protein 2;LysM and putative peptidoglycan-binding domain-containing protein 1	yes	no	0	1	1	7	0							1										10.831	10.831	3	0.026491	3337	DP690-7	77.533	48.575			1.3503	1.4232	NaN	1	0	Median	12677000	5990800	6685700	16650	1600	15561	32810	79413	79413	2258	0	9606
YHAASAEEQATIER	0	1	Unmodified	1574.7325	0.73249893	2445	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	15	0															1		11.131	11.131	2	0.03311	3694	DP690-15	93.561	44.095			NaN	NaN	NaN	0	0	Median	0	0	0	16651	2445	15562	32811	79414	79414		1	9606
YHALLIPSCPGALTDLASSGSLAR	0	1	Unmodified	2469.2686	0.26859365	1671	Q8NB37	PDDC1	Parkinson disease 7 domain-containing protein 1	yes	yes	0	0	0	15	0															1		19.932	19.932	3	3.6833E-10	15075	DP690-15	147.08	125.59			0.69271	0.8017	NaN	1	0	Median	14813000	9462100	5350900	16652	1671	15563	32812	79415;79416;79417	79415		3	9606
YHCTHEAGVHSVGLTWIHK	1	0	Unmodified	2231.0694	0.069440329	1942	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	11	0											1						12.888	12.888	5	0.083961	6304	DP690-11	21	9.5405			0.58373	0.70662	NaN	1	0	Median	64114000	42022000	22092000	16653	1942	15564	32813	79418	79418		1	9606
YHDEADQSALQR	0	1	Unmodified	1431.6379	0.63787026	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										2							10.713	10.713	2;3	6.7256E-05	3296	DP690-10	178.54	107.16			0.84051	1.0061	10.016	2	0	Median	423550000	231530000	192020000	16654	1158	15565	32814;32815	79419;79420;79421;79422	79422		4	9606
YHDLECQLIQEFTSAQR	0	1	Unmodified	2136.9899	0.9898526	90	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	0	0	11	0											1						20.824	20.824	3	0.0029858	17745	DP690-11	71.402	52.642			1.2538	1.5	NaN	1	0	Median	29463000	14608000	14855000	16655	90	15566	32816	79423	79423		1	9606
YHEQLSTQSLIELFESFK	1	0	Unmodified	2198.0895	0.089549874	1075	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	10	0.816									1	1	1						23.783	23.783	3	7.7944E-11	21701	DP690-10	160.45	124.82			0.84022	1.0067	2.0406	2	0	Median	23357000	15508000	7849600	16656	1075	15567	32817;32818;32819	79424;79425;79426;79427;79428;79429	79425		6	9606
YHEVHYILLDPSCSGSGMPSR	0	1	Oxidation (M)	2420.0889	0.088914722	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	1	0	13	0													1				15.088	15.088	4	0.00147	8922	DP690-13	69.122	56.07			0.76167	0.92289	NaN	1	0	Median	59573000	34513000	25059000	16657	1906	15568	32820	79430;79431	79431	2443	2	9606
YHEVHYILLDPSCSGSGMPSR	0	1	Unmodified	2404.094	0.0940001	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	13	0													1				16.039	16.039	4	0.00017809	10215	DP690-13	95.5	95.5			0.59162	0.72225	NaN	1	0	Median	38847000	20747000	18100000	16658	1906	15568	32821	79432	79432		1	9606
YHGHSMSDPGVSYR	0	1	Unmodified	1591.6838	0.6837746	419	P08559;P29803	PDHA1;PDHA2	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial	yes	no	0	0	0	14	0														2			10.733	10.733	3	0.019905	3089	DP690-14	77.527	45.538			NaN	NaN	NaN	0	0	Median	0	0	0	16659	419	15569	32822;32823	79433;79434	79433		2	9606
YHGNVMLLR	0	1	Oxidation (M)	1117.5702	0.57024839	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	2	0		1															12.26	12.26	3	0.0095448	4401	DP690-2	76.478	31.497			2.9686	3.0985	NaN	1	0	Median	5183300	1228400	3955000	16660	789	15570	32824	79435;79436	79435	1192	2	9606
YHGNVMLLR	0	1	Unmodified	1101.5753	0.57533377	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															13.575	13.575	2	0.0076694	6023	DP690-2	91.906	54.747			0.98994	1.0316	NaN	1	0	Median	27699000	13909000	13791000	16661	789	15570	32825	79437;79438	79438		2	9606
YHGYPYSFLMS	0	0	Oxidation (M)	1379.5856	0.58562368	2091	Q9H0U3	MAGT1	Magnesium transporter protein 1	yes	yes	0	1	0	15	0															1		18.517	18.517	2	0.020393	13348	DP690-15	95.352	75.591			NaN	NaN	NaN	0	0	Median	0	0	0	16662	2091	15571	32826	79439	79439	2607	1	9606
YHLGEETFK	1	0	Unmodified	1122.5346	0.53457439	1784	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	0	0	4	0				1													13.484	13.484	2	0.00053946	6480	DP690-4	148.99	90.07			45.056	46.015	NaN	1	0	Median	394990000	9158800	385830000	16663	1784	15572	32827	79440;79441	79440		2	9606
YHPGEENFK	1	0	Unmodified	1119.4985	0.49852324	2380	Q9UKY1	ZHX1	Zinc fingers and homeoboxes protein 1	yes	yes	0	0	0	11	0											1						10.666	10.666	2	0.030618	3066	DP690-11	95.741	62.743			NaN	NaN	NaN	0	0	Median	56048000	0	56048000	16664	2380	15573	32828	79442	79442		1	9606
YHSLAPMYYR	0	1	Oxidation (M)	1315.6019	0.60194245	830;542;936	P51148;P20339;P61020	RAB5C;RAB5A;RAB5B	Ras-related protein Rab-5C;Ras-related protein Rab-5A;Ras-related protein Rab-5B	no	no	0	1	0	15	0															2		13.016	13.016	2;3	0.0028474	5991	DP690-15	104.06	87.859			0.76669	0.84678	1.1022	2	0	Median	236560000	130020000	106540000	16665	830;542;936	15574	32829;32830	79443;79444;79445;79446;79447;79448	79446	692	6	9606
YHTESLQNMSK	1	0	Unmodified	1336.6082	0.60815004	300	O94992	HEXIM1	Protein HEXIM1	yes	yes	0	0	0	4	0				1													11.325	11.325	2	0.048427	3839	DP690-4	87.258	43.488			NaN	NaN	NaN	0	0	Median	1225600	0	1225600	16666	300	15575	32831	79449	79449		1	9606
YHTSQSGDEMTSLSEYVSR	0	1	Unmodified	2175.9379	0.93787661	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	5.67	3.77			2								1						16.519	16.519	2;3	4.7081E-37	10640	DP690-3	314.55	291.67			1.0094	1.0751	4.8577	3	0	Plateau	302590000	148220000	154360000	16667	416	15576	32832;32833;32834	79450;79451;79452;79453;79454;79455;79456;79457;79458;79459;79460	79457		11	9606
YHTSQSGDEMTSLSEYVSR	0	1	Oxidation (M)	2191.9328	0.93279124	416	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	4.29	2.81		1	3	2							1						14.768	14.768	2;3	2.9406000000000003E-33	7830	DP690-3	274.38	269.23			1.0052	1.1005	9.669	5	0	Median	891590000	417130000	474460000	16668	416	15576	32835;32836;32837;32838;32839;32840;32841	79461;79462;79463;79464;79465;79466;79467;79468;79469;79470;79471;79472;79473;79474;79475;79476;79477;79478	79469	467	17	9606
YHTVNGHNCEVR	0	1	Unmodified	1484.6579	0.6578942	437	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	0	14	0														1			9.735	9.735	3	0.008158	2051	DP690-14	69.01	49.616			0.74997	0.82386	NaN	1	0	Median	256290	125540	130750	16669	437	15577	32842	79479;79480	79480		2	9606
YHVLVNLGK	1	0	Unmodified	1041.5971	0.59711507	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							14.03	14.03	2	0.0015811	8111	DP690-10	119.56	88.027			0.9958	1.2244	NaN	1	0	Median	158740000	84531000	74211000	16670	269	15578	32843	79481;79482;79483;79484	79482		4	9606
YHVPVVVVPEGSASDTHEQAILR	0	1	Unmodified	2502.2867	0.28668655	376	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	12	0												1					16.276	16.276	4	0.0037959	10902	DP690-12	82.034	61.958			NaN	NaN	NaN	0	0	Median	85122000	85122000	0	16671	376	15579	32844	79485	79485		1	9606
YHYKEEAEIICDK	2	0	Unmodified	1696.7767	0.77667193	1712	Q8TBE9	NANP	N-acylneuraminate-9-phosphatase	yes	yes	0	0	1	7	0							1										12.818	12.818	3	0.0022	5664	DP690-7	71.513	58.001			1.4925	1.5957	NaN	1	0	Median	19742000	7989400	11753000	16672	1712	15580	32845	79486;79487;79488	79487		3	9606
YIASVQGSTPSPR	0	1	Unmodified	1361.6939	0.69392858	808	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	11	2.31									1	3	1					1	12.822	12.822	2	5.7226E-05	6404	DP690-10	131.82	104.08			0.70128	0.86345	0.68232	2	0	Median	160470000	80819000	79647000	16673	808	15581	32846;32847;32848;32849;32850;32851	79489;79490;79491;79492;79493;79494;79495;79496;79497;79498;79499;79500	79490		12	9606
YIATDFTLK	1	0	Unmodified	1070.5648	0.56481189	194	O43847	NRD1	Nardilysin	yes	yes	0	0	0	3	0			1														17.282	17.282	2	0.021721	11724	DP690-3	77.732	59.836			0.84051	0.89921	NaN	1	0	Median	23133000	13178000	9954700	16674	194	15582	32852	79501;79502;79503;79504	79503		4	9606
YICDNQDTISSK	1	0	Unmodified	1442.6348	0.63475872	37	CON__P02769			yes	yes	0	0	0	4	0				1													12.325	12.325	2	5.1402E-11	4995	DP690-4	179.1	93.239		+	NaN	NaN	NaN	0	0	Median	12827000	12827000	0	16675	37	15583	32853	79505;79506	79506		2	
YIDQEELNK	1	0	Unmodified	1150.5506	0.55061839	416;409;1411	P07900;Q14568;P08238;Q58FF8	HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	5.5	2.63			1	2	1	1					1						12.767	12.767	2	4.8389E-05	5495	DP690-4	181.81	127.03			1.0592	1.1756	8.5857	4	0	Median	966020000	466840000	499190000	16676	409;416;1411	15584	32854;32855;32856;32857;32858;32859	79507;79508;79509;79510;79511;79512;79513;79514;79515;79516;79517;79518;79519;79520	79514		14	9606
YIDSADLEPITSQEEPVR	0	1	Unmodified	2060.9902	0.99022976	516	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	4.5	0.5				1	1												17.853	17.853	2	4.6986000000000004E-33	12110	DP690-4	270.21	241.92			0.73139	0.73758	NaN	1	0	Median	294910000	175830000	119070000	16677	516	15585	32860;32861	79521;79522;79523;79524;79525;79526	79523		6	9606
YIELFLNSCPK	1	0	Unmodified	1382.6904	0.69042311	1165	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	13	0													1				19.087	19.087	2	0.0061046	14301	DP690-13	114.4	55.725			NaN	NaN	NaN	0	0	Median	15805000	0	15805000	16678	1165	15586	32862	79527	79527		1	9606
YIFPTLDKPSVVSLQNLIVR	1	1	Unmodified	2301.3097	0.30965383	1800	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	1	11	0											1						21.906	21.906	3	2.861E-06	19088	DP690-11	142.88	111.93			NaN	NaN	NaN	0	0	Median	18092000	0	18092000	16679	1800	15587	32863	79528;79529	79528		2	9606
YIFSVVENLQR	0	1	Unmodified	1366.7245	0.72450043	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										1							19.71	19.71	2	0.0043807	16296	DP690-10	108.57	93.419			0.78668	0.98533	NaN	1	0	Median	45359000	24421000	20938000	16680	1158	15588	32864	79530	79530		1	9606
YIFTLGDIAQLCPAR	0	1	Unmodified	1736.892	0.89197646	731	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	10	0										1							22.176	22.176	2	0.00021501	19563	DP690-10	116.87	93.359			NaN	NaN	NaN	0	0	Median	27327000	16722000	10605000	16681	731	15589	32865	79531	79531		1	9606
YIGEVGDIVVGR	0	1	Unmodified	1275.6823	0.68230126	1238	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	14	0														1			17.828	17.828	2	0.0053251	12780	DP690-14	84.817	57.514			0.73966	0.89691	NaN	1	0	Median	31910000	16723000	15187000	16682	1238	15590	32866	79532	79532		1	9606
YIHLENLLAR	0	1	Unmodified	1240.6928	0.69280637	1383	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	13	0													1				17.652	17.652	3	0.00025025	12423	DP690-13	96.342	73.425			0.90312	1.1133	NaN	1	0	Median	18974000	11784000	7190000	16683	1383	15591	32867	79533;79534	79534		2	9606
YIHSADIIHR	0	1	Unmodified	1223.6411	0.64110515	1357	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	0	6	0						1											11.525	11.525	3	0.0021228	3956	DP690-6	100.48	50.976			0.93179	1.0503	NaN	1	0	Median	21099000	10094000	11005000	16684	1357	15592	32868	79535;79536;79537;79538	79535		4	9606
YIHSANVLHR	0	1	Unmodified	1208.6414	0.6414395	610;600	P27361;P31152;Q16659;P28482	MAPK3;MAPK4;MAPK6;MAPK1	Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 4;Mitogen-activated protein kinase 6;Mitogen-activated protein kinase 1	no	no	0	0	0	6	0						1											10.464	10.464	3	2.9854E-05	2844	DP690-6	159.34	134.56			0.88364	0.92252	NaN	1	0	Median	214520000	111200000	103310000	16685	600;610	15593	32869	79539;79540;79541;79542	79541		4	9606
YIIIGDMGVGK	1	0	Oxidation (M)	1180.6162	0.61619553	939	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	1	0	15	0															1		16.25	16.25	2	0.018566	10411	DP690-15	76.17	38.442			0.88241	0.97939	NaN	1	0	Median	134380000	72087000	62298000	16686	939	15594	32870	79543;79544;79545;79546	79546	1458	4	9606
YIIVTQVGPGPQILDDPCAHLLGPDGLPKPAA	1	0	Unmodified	3321.7431	0.74313396	875	P53602	MVD	Diphosphomevalonate decarboxylase	yes	yes	0	0	1	6	0						1											21.239	21.239	3	0.011561	15406	DP690-6	58.945	35.821			NaN	NaN	NaN	0	0	Median	1324600	1324600	0	16687	875	15595	32871	79547;79548	79547		2	9606
YILVTGGVISGIGK	1	0	Unmodified	1375.8075	0.80750177	516	P17812;Q9NRF8	CTPS1;CTPS2	CTP synthase 1;CTP synthase 2	yes	no	0	0	0	4	0				1													19.096	19.096	2	4.8443E-05	13627	DP690-4	169.58	161.77			0.85066	0.88725	NaN	1	0	Median	151430000	81546000	69879000	16688	516	15596	32872	79549;79550;79551;79552	79552		4	9606
YIMVPSGNMGVFDPTEIHNR	0	1	2 Oxidation (M)	2308.0616	0.061637339	2283	Q9P003	CNIH4	Protein cornichon homolog 4	yes	yes	0	2	0	9	0									1								17.081	17.081	3	0.00024443	11253	DP690-9	91.547	82.931			0.68147	0.85215	NaN	1	0	Median	9781100	6167200	3614000	16689	2283	15597	32873	79553;79554	79553	2733;2734	2	9606
YINENLIVNTDELGR	0	1	Unmodified	1761.8897	0.88972785	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	8	4				1								1					18.626	18.626	2	7.5964E-16	13071	DP690-4	232.17	203.94			1.2921	1.5285	42.926	2	0	Median	33005000	14295000	18710000	16690	520	15598	32874;32875	79555;79556;79557;79558;79559;79560	79558		6	9606
YIPIQYVLSR	0	1	Unmodified	1250.7023	0.70230842	35	CON__P02668			yes	yes	0	0	0	4.29	2.37	1	1	1	1	1		1	1									19.699	19.699	2	1.1092E-06	14225	DP690-4	171.99	119.51		+	NaN	NaN	NaN	0	0	Median	1494299999.9999998	1494299999.9999998	0	16691	35	15599	32876;32877;32878;32879;32880;32881;32882	79561;79562;79563;79564;79565;79566;79567;79568;79569;79570;79571;79572;79573;79574;79575;79576;79577	79570		17	
YIQAEPPTNK	1	0	Unmodified	1159.5873	0.58733824	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	12	2										1				1			11.269	11.269	2	0.00019783	4194	DP690-10	127.68	79.831			1.2741	1.5451	20.402	2	0	Median	154900000	73283000	81622000	16692	1710	15600	32883;32884	79578;79579;79580;79581	79579		4	9606
YIQEAEMLR	0	1	Unmodified	1151.5645	0.56449431	1114	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	13	0													1				15.297	15.297	2	0.0017781	9199	DP690-13	117.4	48.201			1.0409	1.2431	NaN	1	0	Median	99002000	48220000	50782000	16693	1114	15601	32885	79582;79583	79583		2	9606
YIQPWESEFIDSQR	0	1	Unmodified	1796.837	0.836964	1492	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	10	0										1							19.668	19.668	2	1.8833E-05	16301	DP690-10	128.01	103.32			1.0059	1.2549	NaN	1	0	Median	69868000	31565000	38303000	16694	1492	15602	32886	79584;79585;79586	79585		3	9606
YIQQTKPLTLER	1	1	Unmodified	1488.83	0.83002813	190	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	1	15	0															2		13.089	13.089	2;3	0.00060871	6137	DP690-15	89.189	75.149			0.78487	0.91097	15.694	2	0	Median	76669000	35729000	40941000	16695	190	15603	32887;32888	79587;79588;79589;79590	79588		4	9606
YIQSTGSSDDSALALLADITSK	1	0	Unmodified	2255.1169	0.11688684	860	P52739	ZNF131	Zinc finger protein 131	yes	yes	0	0	0	11	0											1						23.615	23.615	2	0.0043836	21320	DP690-11	70.117	70.117			0.77524	0.93565	NaN	1	0	Median	5055800	2426600	2629300	16696	860	15604	32889	79591	79591		1	9606
YISCVFAEESDLSR	0	1	Unmodified	1674.7559	0.75593649	1158	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	10	0										1							18.172	18.172	2	1.1978E-05	14061	DP690-10	177.44	154.75			0.77506	0.95889	NaN	1	0	Median	110880000	63426000	47454000	16697	1158	15605	32890	79592;79593;79594;79595;79596	79594		5	9606
YISFEER	0	1	Unmodified	942.4447	0.44469675	1258	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	14	0														1			14.494	14.494	1	0.001029	8142	DP690-14	138.37	49.724			NaN	NaN	NaN	0	0	Median	11318000	11318000	0	16698	1258	15606	32891	79597;79598	79597		2	9606
YISPDQLADLYK	1	0	Unmodified	1424.7187	0.71874635	395	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	5	0					1												19.433	19.433	2	0.00019854	13617	DP690-5	155.06	115.44			1.3496	1.3444	NaN	1	0	Median	78593000	33645000	44948000	16699	395	15607	32892	79599;79600;79601;79602	79600		4	9606
YISSQIERPIR	0	2	Unmodified	1360.7463	0.7462985	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	10	0										1							12.914	12.914	3	0.01097	6485	DP690-10	70.056	23.987			0.73879	0.87993	NaN	1	0	Median	363970000	206070000	157900000	16700	269	15608	32893	79603;79604	79604		2	9606
YITASTFAQAR	0	1	Unmodified	1227.6248	0.62478638	1943	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	11	0											1						15.255	15.255	2	0.0082085	9722	DP690-11	81.972	50.898			0.98775	1.1787	NaN	1	0	Median	35355000	18564000	16791000	16701	1943	15609	32894	79605	79605		1	9606
YITQNGDYQLR	0	1	Unmodified	1369.6626	0.66262845	2040	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	13	0													1				14.368	14.368	2	0.00021594	7886	DP690-13	148.52	107.09			0.59158	0.72094	NaN	1	0	Median	42702000	23238000	19464000	16702	2040	15610	32895	79606;79607	79606		2	9606
YIVQVSPLGIR	0	1	Unmodified	1243.7289	0.72885752	1153	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	10	0										1							18.429	18.429	2	0.028462	14561	DP690-10	88.37	74.791			0.74591	0.92722	NaN	1	0	Median	84681000	52150000	32531000	16703	1153	15611	32896	79608	79608		1	9606
YIYDQCPAVAGYGPIEQLPDYNR	0	1	Unmodified	2701.2483	0.24825214	637	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	15	1.41													1			2	19.997	19.997	2	1.5204E-37	15438	DP690-13	260.08	246.56			0.6273	0.71197	NaN	1	0	Median	261540000	156810000	104730000	16704	637	15612	32897;32898;32899	79609;79610;79611;79612;79613;79614;79615;79616;79617;79618	79613		10	9606
YIYDSAFHPDTGEK	1	0	Unmodified	1641.7311	0.73110195	2145	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	14	0														1			14.956	14.956	3	0.00048935	8821	DP690-14	94.781	73.527			0.71324	0.86414	NaN	1	0	Median	70352000	39882000	30470000	16705	2145	15613	32900	79619;79620;79621	79619		3	9606
YKDEREDAILEEGMER	1	2	Unmodified	1981.9051	0.90511992	1606	Q8IWE4	DCUN1D3	DCN1-like protein 3	yes	yes	0	0	2	14	0														1			14.52	14.52	3	0.049016	8240	DP690-14	50.376	36.218			0.7278	0.8564	NaN	1	0	Median	28129000	12678000	15451000	16706	1606	15614	32901	79622	79622		1	9606
YKDLDEDELLGNLSETELK	2	0	Unmodified	2223.0794	0.079438698	2264	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	1	14	0														1			19.38	19.38	3	1.8094E-10	14795	DP690-14	114.56	90.178			0.93954	1.0512	NaN	1	0	Median	84673000	42306000	42367000	16707	2264	15615	32902	79623;79624;79625	79625		3	9606
YKDLEQQDCEIAQEIQEK	2	0	Unmodified	2266.0423	0.042341685	1603	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	yes	yes	0	0	1	14	0														1			16.558	16.558	3	3.8148E-05	11030	DP690-14	121.01	121.01			1.1607	1.2987	NaN	1	0	Median	84603000	35553000	49049000	16708	1603	15616	32903	79626;79627	79627		2	9606
YKEEYAVLISEAQAIK	2	0	Unmodified	1853.9775	0.97748023	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	9	0									1								18.859	18.859	3	0.002064	13433	DP690-9	75.018	50.563			0.76892	0.90856	NaN	1	0	Median	20493000	12189000	8304000	16709	1264	15617	32904	79628;79629	79629		2	9606
YKEVYAAAAEVLGLILR	1	1	Unmodified	1878.0615	0.06148463	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	9.67	0.471									2	4							24.753	24.753	2;3	1.162E-07	22675	DP690-10	145.8	100.18			0.85164	1.0118	2.1855	3	0	Median	84796000	45120000	39676000	16710	1046	15618	32905;32906;32907;32908;32909;32910	79630;79631;79632;79633;79634;79635;79636;79637;79638;79639;79640;79641;79642;79643;79644;79645;79646;79647	79630		18	9606
YKGQHVPGSPFQFTVGPLGEGGAHK	2	0	Unmodified	2594.303	0.30300532	549	P21333	FLNA	Filamin-A	yes	yes	0	0	1	10.5	0.5										1	1						15.832	15.832	4;5	0.00092294	10723	DP690-10	65.854	65.854			0.65132	0.71802	9.6695	2	0	Median	853090000	527860000	325230000	16711	549	15619	32911;32912	79648;79649;79650;79651;79652	79649		5	9606
YKGQSGIIYCFSQK	2	0	Unmodified	1677.8185	0.81847717	751	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	9.75	3.34				1							1	2					14.997	14.997	2;3	0.0015547	8932	DP690-12	85.469	70.276			0.98242	1.075	4.6217	3	0	Median	372750000	191020000	181730000	16712	751	15620	32913;32914;32915;32916	79653;79654;79655;79656;79657;79658;79659;79660;79661	79656		9	9606
YKPESEELTAER	1	1	Unmodified	1450.694	0.69398816	402	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	1	6.67	3.77				2								1					11.731	11.731	2;3	5.9964E-05	4277	DP690-4	158.01	105.32			1.0879	1.2407	2.1159	2	0	Median	46419000	24992000	21427000	16713	402	15621	32917;32918;32919	79662;79663;79664;79665;79666;79667	79666		6	9606
YKPLDLRPK	2	1	Unmodified	1128.6655	0.66552898	733	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	2	12	4								1								1	11.649	11.649	3	0.0021988	4199	DP690-16	102.62	54.916			0.92976	1.0107	14.234	2	0	Median	23767000	12499000	11268000	16714	733	15622	32920;32921	79668;79669;79670;79671;79672;79673	79669		6	9606
YKQIFLGGVDKR	2	1	Unmodified	1422.7983	0.79833407	381	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	2	15	0															1		12.935	12.935	3	3.7926E-05	6006	DP690-15	130.44	105.24			0.79939	0.91362	NaN	1	0	Median	65253000	34464000	30790000	16715	381	15623	32922	79674	79674		1	9606
YKVCNYGLTFTQK	2	0	Unmodified	1620.797	0.79701344	2433	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	1	15	0															1		15.412	15.412	2	0.00028682	9331	DP690-15	141.71	108.98			0.8221	0.93678	NaN	1	0	Median	6937500	3560000	3377500	16716	2433	15624	32923	79675;79676	79676		2	9606
YKWCEYGLTFTEK	2	0	Unmodified	1723.7916	0.79159371	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	1	14	0														1			17.674	17.674	3	0.00069084	12548	DP690-14	94.717	79.33			0.80837	0.90434	NaN	1	0	Median	88796000	51958000	36838000	16717	744	15625	32924	79677;79678;79679;79680	79678		4	9606
YLAADKDGNVTCER	1	1	Unmodified	1610.7359	0.73586975	1366	Q16658	FSCN1	Fascin	yes	yes	0	0	1	7.2	3.92				3								2					11.272	11.272	2;3	5.4333E-05	3682	DP690-4	137.81	113.58			0.96051	1.0955	8.0127	4	0	Median	182760000	90200000	92564000	16718	1366	15626	32925;32926;32927;32928;32929	79681;79682;79683;79684;79685;79686;79687;79688;79689;79690;79691;79692;79693;79694	79687		14	9606
YLADQNNQVR	0	1	Unmodified	1219.5945	0.59454889	1729	Q8TF05	PPP4R1	Serine/threonine-protein phosphatase 4 regulatory subunit 1	yes	yes	0	0	0	3	0			1														10.958	10.958	2	0.0092281	3413	DP690-3	84.743	50.211			0.98509	1.1162	NaN	1	0	Median	10472000	5189700	5282000	16719	1729	15627	32930	79695;79696	79695		2	9606
YLAEFATGNDRK	1	1	Unmodified	1383.6783	0.67827852	970	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	1	12.3	3.77							1								2		13.166	13.166	2;3	3.4509E-05	6091	DP690-7	131.42	101.28			1.1158	1.2993	12.469	3	0	Median	117810000	54975000	62833000	16720	970	15628	32931;32932;32933	79697;79698;79699;79700;79701;79702;79703;79704;79705;79706	79706		10	9606
YLAEKYEWDVAEAR	1	1	Unmodified	1741.8312	0.83115034	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	8.33	3.77			1								2						16.338	16.338	2;3	6.0949E-05	11381	DP690-11	119.96	79.897			0.97731	1.0696	10.138	3	0	Plateau	322270000	161970000	160300000	16721	483	15629	32934;32935;32936	79707;79708;79709;79710;79711;79712;79713	79709		7	9606
YLAEVAAGDDKK	2	0	Unmodified	1278.6456	0.6455814	1014	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	1	11	4							2								2		11.152	11.152	2;3	5.3911E-05	3673	DP690-7	125.28	81.74			0.99824	1.1043	7.408	4	0	Median	132250000	66976000	65277000	16722	1014	15630	32937;32938;32939;32940	79714;79715;79716;79717;79718;79719;79720;79721;79722;79723;79724;79725	79723		12	9606
YLAEVACGDDR	0	1	Unmodified	1267.5503	0.55030081	599	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	15	0															1		13.597	13.597	2	0.00055992	6930	DP690-15	111.61	85.223			1.0417	1.1964	NaN	1	0	Median	36612000	18909000	17704000	16723	599	15631	32941	79726;79727	79727		2	9606
YLAEVACGDDRK	1	1	Unmodified	1395.6453	0.64526383	599	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	1	9.67	3.77							2								1		11.623	11.623	2;3	0.00011708	4155	DP690-7	139.32	110.08			0.92944	0.9796	6.3507	3	0	Plateau	116190000	59440000	56751000	16724	599	15632	32942;32943;32944	79728;79729;79730;79731;79732;79733;79734;79735;79736;79737;79738;79739;79740;79741	79735		14	9606
YLAEVATGEK	1	0	Unmodified	1079.5499	0.5498901	960	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	7	0							1										13.051	13.051	2	0.016854	5930	DP690-7	102.62	47.835			NaN	NaN	NaN	0	0	Median	10704000	10704000	0	16725	960	15633	32945	79742	79742		1	9606
YLAGEVAESADIAR	0	1	Unmodified	1463.7256	0.72562264	15	A6NKF1	SAC3D1	SAC3 domain-containing protein 1	yes	yes	0	0	0	14	0														1			16.282	16.282	2	2.7208E-05	10708	DP690-14	126.71	98.532			0.94459	1.1432	NaN	1	0	Median	46787000	24578000	22209000	16726	15	15634	32946	79743	79743		1	9606
YLALQDLMLLSQYSPSR	0	1	Oxidation (M)	2013.0241	0.024112846	2006	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	0	1	0	10	0										1							22.405	22.405	2	0.0022894	20020	DP690-10	116.19	84.71			NaN	NaN	NaN	0	0	Median	9056800	9056800	0	16727	2006	15635	32947	79744;79745	79744	2540	2	9606
YLANIEQQHGNSGR	0	1	Unmodified	1585.7597	0.75971673	2379	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	12	0												1					11.327	11.327	2	0.0021678	3937	DP690-12	167.11	103.93			NaN	NaN	NaN	0	0	Median	0	0	0	16728	2379	15636	32948	79746	79746		1	9606
YLAPSGPSGTLK	1	0	Unmodified	1189.6343	0.63428844	1366	Q16658	FSCN1	Fascin	yes	yes	0	0	0	12.5	0.5												1	1				13.583	13.583	2	0.0004892	6999	DP690-12	112.3	112.3			0.73102	0.84943	10.97	2	0	Median	137490000	78327000	59161000	16729	1366	15637	32949;32950	79747;79748;79749;79750;79751;79752;79753	79750		7	9606
YLCLLASDAEVPEPCLPR	0	1	Unmodified	2102.0176	0.017647259	83	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	11	0											1						20.771	20.771	2	0.0092474	17389	DP690-11	101.72	69.241			NaN	NaN	NaN	0	0	Median	21686000	21686000	0	16730	83	15638	32951	79754;79755	79754		2	9606
YLDEDTIYHLQPSGR	0	1	Unmodified	1805.8584	0.85842773	634	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	5	0					2												16.584	16.584	2;3	8.6828E-08	10044	DP690-5	167.73	129.55			0.75663	0.79483	NaN	1	0	Median	134080000	10015000	124060000	16731	634	15639	32952;32953	79756;79757;79758;79759;79760	79759		5	9606
YLDGLTAER	0	1	Unmodified	1036.5189	0.51892433	44	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	4.5	5.22	1	3		1												1	15.138	15.138	2	2.728E-06	6675	DP690-1	166.68	103.96		+	0.1566	0.17677	NaN	1	0	Median	155230000	148030000	7205700	16732	44	15640	32954;32955;32956;32957;32958;32959	79761;79762;79763;79764;79765;79766;79767;79768;79769;79770	79761		10	9606
YLDLHDCYLK	1	0	Unmodified	1338.6278	0.62782285	1166	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	12	0												1					15.934	15.934	3	0.010752	10297	DP690-12	70.399	56.219			0.9473	1.1287	NaN	1	0	Median	46759000	22497000	24262000	16733	1166	15641	32960	79771	79771		1	9606
YLDLILNDFVR	0	1	Unmodified	1379.7449	0.74490152	1316	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	4	0				1													22.842	22.842	2	0.0087196	17711	DP690-4	94.692	94.692			1.7461	1.9655	NaN	1	0	Median	1259700	524210	735440	16734	1316	15642	32961	79772;79773	79772		2	9606
YLDPSFFQHR	0	1	Unmodified	1308.6251	0.62512073	2173	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	11	1.41									1	1	1	1	1				16.586	16.586	3	3.2418E-05	10914	DP690-13	146.79	106.63			0.76375	0.91315	6.1523	5	0	Median	274400000	154240000	120160000	16735	2173	15643	32962;32963;32964;32965;32966	79774;79775;79776;79777;79778;79779;79780;79781;79782;79783;79784;79785;79786;79787;79788;79789;79790;79791	79788		18	9606
YLDSIPPGQYMDSSLVK	1	0	Oxidation (M)	1927.9237	0.9237301	391	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	1	0	14	0														1			17.292	17.292	2	0.00046769	12044	DP690-14	110.64	91.814			0.91888	1.1146	NaN	1	0	Median	34023000	19980000	14043000	16736	391	15644	32967	79792;79793;79794;79795	79794	418	4	9606
YLEAGAAGLR	0	1	Unmodified	1019.54	0.53999412	2274	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	6	0						1											13.987	13.987	2	0.0032045	6973	DP690-6	94.302	44.176			0.93082	1.0264	NaN	1	0	Median	40970000	20763000	20206000	16737	2274	15645	32968	79796	79796		1	9606
YLECSALTQR	0	1	Unmodified	1239.5918	0.59177169	1012	P63000;P60763;P15153	RAC1;RAC3;RAC2	Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3;Ras-related C3 botulinum toxin substrate 2	yes	no	0	0	0	12	4								1								1	14.229	14.229	2	0.00089052	7213	DP690-8	109.48	60.382			1.0505	1.2147	3.1639	2	0	Median	48779000	25210000	23569000	16738	1012	15646	32969;32970	79797;79798;79799;79800	79799		4	9606
YLEEIATQMR	0	1	Oxidation (M)	1268.6071	0.60708741	1089	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	1	0	3	0			1														14.42	14.42	2	0.0022046	7843	DP690-3	106.6	74.839			1.1455	1.2705	NaN	1	0	Median	42436000	21007000	21429000	16739	1089	15647	32971	79801;79802;79803;79804	79802	1711	4	9606
YLEHGEYEGNLYGTK	1	0	Unmodified	1771.8053	0.80532952	2280	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	9.33	3.77				1								2					13.884	13.884	2;3	5.1594E-07	7454	DP690-12	215.02	200.08			0.85084	0.9508	31.973	3	0	Median	234220000	129400000	104810000	16740	2280	15648	32972;32973;32974	79805;79806;79807;79808;79809;79810;79811;79812;79813;79814;79815	79809		11	9606
YLEKPITMLL	1	0	Oxidation (M)	1235.6835	0.68354681	457	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	1	1	12	0												1					18.947	18.947	2	0.0415	14517	DP690-12	86.136	51.963			0.76194	0.9181	NaN	1	0	Median	16757000	9453900	7303100	16741	457	15649	32975	79816	79816	525	1	9606
YLENGKETLQR	1	1	Unmodified	1349.6939	0.69392858	454;372	P10321;P30511;P04439;P01893	HLA-C;HLA-F;HLA-A;HLA-H	HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, alpha chain F;HLA class I histocompatibility antigen, A-3 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H	no	no	0	0	1	14	0														2			10.894	10.894	2;3	5.8751E-05	3287	DP690-14	172.88	144.52			0.97419	1.1724	23.099	2	0	Median	146960000	73099000	73858000	16742	454;372	15650	32976;32977	79817;79818;79819;79820;79821;79822	79818		6	9606
YLESEEYQER	0	1	Unmodified	1344.5834	0.58337508	2514	Q9Y676	MRPS18B	28S ribosomal protein S18b, mitochondrial	yes	yes	0	0	0	14	0														1			13.043	13.043	2	8.7552E-05	6231	DP690-14	159.28	141.05			0.94923	1.1493	NaN	1	0	Median	43500000	21025000	22475000	16743	2514	15651	32978	79823;79824;79825;79826;79827;79828	79827		6	9606
YLETLLYSQQQLAK	1	0	Unmodified	1696.9036	0.903587	1227	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	4	0				1													18.813	18.813	2	2.3404E-16	13306	DP690-4	273.44	237.73			0.84009	0.91503	NaN	1	0	Median	21003000	11817000	9185900	16744	1227	15652	32979	79829;79830;79831;79832	79829		4	9606
YLEVSEPQDIECCGALEYYDK	1	0	Unmodified	2580.1036	0.10362131	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	12	0												2					19.441	19.441	2	0.00044857	15212	DP690-12	102.29	76.062			0.86296	1.0381	NaN	1	0	Median	18045000	9422100	8622700	16745	154	15653	32980;32981	79833;79834;79835	79833		3	9606
YLEVVLNTLQQASQAQVDK	1	0	Unmodified	2146.127	0.12699801	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	9	3.46			1								3						21.73	21.73	2	1.294E-10	18909	DP690-11	185.32	139.04			NaN	NaN	NaN	0	0	Median	8247100	6652100	1595100	16746	1300	15654	32982;32983;32984;32985	79836;79837;79838;79839;79840;79841	79840		6	9606
YLGFGTPSNLGK	1	0	Unmodified	1252.6452	0.64518747	287	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	12	0												1					17.288	17.288	2	0.022741	12321	DP690-12	70.399	30.752			0.78942	0.94021	NaN	1	0	Median	42155000	23678000	18476000	16747	287	15655	32986	79842;79843	79843		2	9606
YLGHVEVDESR	0	1	Unmodified	1302.6204	0.62042929	804	P49757	NUMB	Protein numb homolog	yes	yes	0	0	0	12	0												1					12.261	12.261	3	0.015305	5159	DP690-12	63.864	49.047			0.88058	1.0473	NaN	1	0	Median	68567000	33891000	34676000	16748	804	15656	32987	79844;79845;79846;79847	79845		4	9606
YLGINSDGLVVGR	0	1	Unmodified	1361.7303	0.73031409	1272	Q14331	FRG1	Protein FRG1	yes	yes	0	0	0	14	0														1			18.579	18.579	2	0.0031465	13768	DP690-14	128.03	80.837			NaN	NaN	NaN	0	0	Median	22787000	0	22787000	16749	1272	15657	32988	79848;79849	79848		2	9606
YLGLLENLR	0	1	Unmodified	1089.6182	0.61824444	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	10	1									1		1						19.607	19.607	2	0.00084139	16032	DP690-11	129.68	78.337			0.76239	0.91795	0.049374	2	0	Median	185710000	105170000	80546000	16750	65	15658	32989;32990	79850;79851;79852;79853;79854;79855	79852		6	9606
YLGPAISSGAIYLASSYQDK	1	0	Unmodified	2103.0524	0.052436086	106	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	10	0										1							20.408	20.408	2	0.0005382	17340	DP690-10	97.45	83.861			0.70651	0.8625	NaN	1	0	Median	25050000	14136000	10914000	16751	106	15659	32991	79856;79857;79858	79856		3	9606
YLGQDYEQLR	0	1	Unmodified	1283.6146	0.61461563	405	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	3	0			1														15.827	15.827	2	0.0007336	9755	DP690-3	111.95	56.271			1.223	1.3998	NaN	1	0	Median	23359000	11397000	11962000	16752	405	15660	32992	79859;79860	79860		2	9606
YLGYANEVGEAFR	0	1	Unmodified	1487.7045	0.70449327	2328	Q9UDX5	MTFP1	Mitochondrial fission process protein 1	yes	yes	0	0	0	16	0																1	18.246	18.246	2	0.00071901	12671	DP690-16	106.29	73.97			0.95417	1.118	NaN	1	0	Median	5184900	2646900	2538000	16753	2328	15661	32993	79861;79862;79863;79864	79863		4	9606
YLGYLEQLLR	0	1	Unmodified	1266.6972	0.69722304	32	CON__P02662			yes	yes	0	0	0	4.92	2.1	1	1	1	1	4	1	1	2									22.908	22.908	2	4.7312000000000006E-24	15478	DP690-8	225.57	151.96		+	NaN	NaN	NaN	0	0	Median	1759999999.9999998	1759999999.9999998	0	16754	32	15662	32994;32995;32996;32997;32998;32999;33000;33001;33002;33003;33004;33005	79865;79866;79867;79868;79869;79870;79871;79872;79873;79874;79875;79876;79877;79878;79879;79880;79881;79882;79883;79884;79885;79886;79887;79888;79889	79884		25	
YLHENLPIPQR	0	1	Unmodified	1378.7357	0.73573382	891	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	11	0											3						14.413	14.413	2;3	0.0022954	8532	DP690-11	98.582	69.626			0.76545	0.85716	11.32	2	0	Median	746140000	406000000	340130000	16755	891	15663	33006;33007;33008	79890;79891;79892;79893;79894;79895	79893		6	9606
YLIANATNPESK	1	0	Unmodified	1319.6721	0.67213051	599	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	11	4							1								1		13.962	13.962	2	0.00027747	7098	DP690-7	119.27	80.524			0.81194	0.91246	7.7931	2	0	Median	90105000	51120000	38985000	16756	599	15664	33009;33010	79896;79897	79897		2	9606
YLILKDPNK	2	0	Unmodified	1102.6386	0.63864553	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	1	8	4				1								1					13.139	13.139	2	0.0014087	6282	DP690-12	190.52	121.73			0.8661	0.92666	12.136	2	0	Median	282660000	152800000	129850000	16757	154	15665	33011;33012	79898;79899;79900	79898		3	9606
YLINGVNANNTR	0	1	Unmodified	1347.6895	0.6895119	317	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	3	0			1														14.069	14.069	2	0.0059743	7459	DP690-3	108.47	32.616			NaN	NaN	NaN	0	0	Median	3443000	3443000	0	16758	317	15666	33013	79901;79902	79901		2	9606
YLIPNATQPESK	1	0	Unmodified	1359.7034	0.70343063	640	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	15	0															1		14.689	14.689	2	0.0088959	8377	DP690-15	75.652	55.522			0.71179	0.83672	NaN	1	0	Median	8438700	5413900	3024800	16759	640	15667	33014	79903	79903		1	9606
YLKDVTLQK	2	0	Unmodified	1106.6336	0.63356015	529	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	15	0															3		12.129	12.129	2;3	0.00011494	4763	DP690-15	139.98	76.56			0.97166	1.1126	10.249	2	0	Median	205400000	98230000	107170000	16760	529	15668	33015;33016;33017	79904;79905;79906;79907;79908;79909;79910;79911;79912	79910		9	9606
YLLCELVSDDPR	0	1	Unmodified	1478.7075	0.70752973	1809	Q969H6	POP5	Ribonuclease P/MRP protein subunit POP5	yes	yes	0	0	0	16	0																1	19.487	19.487	2	0.0015304	14045	DP690-16	99.815	99.815			0.74215	0.86822	NaN	1	0	Median	6063500	3520800	2542700	16761	1809	15669	33018	79913;79914;79915	79913		3	9606
YLLDSCAPLLR	0	1	Unmodified	1319.6908	0.69075746	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	10	0										1							19.072	19.072	2	0.00023612	15393	DP690-10	167.24	167.24			0.82409	1.0299	NaN	1	0	Median	63582000	32710000	30872000	16762	1782	15670	33019	79916;79917;79918	79917		3	9606
YLLETSGNLDGLEYK	1	0	Unmodified	1713.8461	0.8461317	742	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	4	0				1													18.962	18.962	2	1.5259E-05	13532	DP690-4	138.63	84.087			1.5115	1.6215	NaN	1	0	Median	4581900	1927300	2654600	16763	742	15671	33020	79919;79920	79920		2	9606
YLLNLNLEPFSEK	1	0	Unmodified	1578.8294	0.82935943	556	P21980	TGM2	Protein-glutamine gamma-glutamyltransferase 2	yes	yes	0	0	0	3	0			1														21.721	21.721	2	0.00016104	17191	DP690-3	155.53	127.76			1.4899	1.5829	NaN	1	0	Median	11491000	4511500	6979700	16764	556	15672	33021	79921;79922;79923;79924	79921		4	9606
YLLPLILGGR	0	1	Unmodified	1113.691	0.69101545	251	O75381	PEX14	Peroxisomal membrane protein PEX14	yes	yes	0	0	0	13.5	0.5													1	1			21.774	21.774	2	0.00043221	17593	DP690-13	120.62	88.685			0.86069	1.06	26.596	2	0	Median	51995000	27576000	24419000	16765	251	15673	33022;33023	79925;79926;79927;79928;79929	79925		5	9606
YLLPLILGGREDR	0	2	Unmodified	1513.8617	0.86166261	251	O75381	PEX14	Peroxisomal membrane protein PEX14	yes	yes	0	0	1	13	0													1				19.512	19.512	3	0.052583	14829	DP690-13	117.09	72.792			NaN	NaN	NaN	0	0	Median	9860800	9860800	0	16766	251	15674	33024	79930	79930		1	9606
YLMEEDEDAYKK	2	0	Oxidation (M)	1548.6654	0.66539015	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	1	9.17	3.58						3			1					2			11.84	11.84	2;3	5.5684E-05	4449	DP690-14	147.28	122.21			1.1547	1.0505	12.383	4	0	Linear	195790000	93996000	101800000	16767	757	15675	33025;33026;33027;33028;33029;33030	79931;79932;79933;79934;79935;79936;79937;79938;79939;79940;79941;79942;79943;79944;79945	79934	1130	15	9606
YLMEEDEDAYKK	2	0	Unmodified	1532.6705	0.67047553	757	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	10	4						1								1			13.485	13.485	2;3	0.00036024	6775	DP690-14	153.05	139.95			0.96107	1.035	4.2738	2	0	Median	45073000	23007000	22066000	16768	757	15675	33031;33032	79946;79947;79948;79949;79950	79946		5	9606
YLMIEEYLTK	1	0	Oxidation (M)	1317.6526	0.65264062	342	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	1	0	4	0				1													19.464	19.464	2	0.016185	14078	DP690-4	83.998	53.681			0.91125	0.97862	NaN	1	0	Median	5017100	2468300	2548700	16769	342	15676	33033	79951;79952;79953	79952	353	3	9606
YLNEAAGVAAEEAR	0	1	Unmodified	1462.7052	0.70522155	1634	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	10	0										1							14.752	14.752	2	0.0010565	9162	DP690-10	100.04	73.066			1.1496	1.4353	NaN	1	0	Median	67061000	27632000	39430000	16770	1634	15677	33034	79954;79955	79954		2	9606
YLNIFGESQPNPK	1	0	Unmodified	1505.7514	0.75144346	2359	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	12	0												2					17.978	17.978	2	2.9078E-05	13100	DP690-12	161.51	131.98			0.69543	0.76216	NaN	1	0	Median	263240000	160630000	102610000	16771	2359	15678	33035;33036	79956;79957;79958;79959;79960	79959		5	9606
YLNQDYEALR	0	1	Unmodified	1283.6146	0.61461563	513	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	3	0			1														15.317	15.317	2	0.028118	9124	DP690-3	94.692	32.729			NaN	NaN	NaN	0	0	Median	10130000	0	10130000	16772	513	15679	33037	79961;79962	79962		2	9606
YLNTNPVGGLLEYAR	0	1	Unmodified	1678.8679	0.8678702	897	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	10.7	1.25									1		1	1					20.508	20.508	2	1.1799E-09	17230	DP690-11	232.56	198.59			0.70214	0.73689	7.8529	3	0	Plateau	1024799999.9999999	586970000	437800000	16773	897	15680	33038;33039;33040	79963;79964;79965;79966;79967;79968;79969;79970;79971;79972;79973	79965		11	9606
YLNTQFIK	1	0	Unmodified	1025.5546	0.55458155	1228	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	3	0			1														15.622	15.622	2	0.015812	9447	DP690-3	114.78	53.995			NaN	NaN	NaN	0	0	Median	35008000	0	35008000	16774	1228	15681	33041	79974;79975	79975		2	9606
YLPELMAEKDSLDPSFTHALR	1	1	Oxidation (M)	2448.1995	0.19951103	260	O75525	KHDRBS3	KH domain-containing, RNA-binding, signal transduction-associated protein 3	yes	yes	0	1	1	13	0													1				17.831	17.831	4	0.036011	12655	DP690-13	42.639	25.045			0.92923	1.1074	NaN	1	0	Median	44162000	26494000	17668000	16775	260	15682	33042	79976;79977	79977	261	2	9606
YLPELMAEKDSLDPSFTHAMQLLTAEIEK	2	0	2 Oxidation (M)	3351.6254	0.62544617	1133	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	2	1	12	0												2					21.258	21.258	4	0.0013543	17362	DP690-12	59.011	59.011			0.74355	0.85013	24.139	2	0	Median	151650000	90224000	61423000	16776	1133	15683	33043;33044	79978;79979	79979	1754;1755	1	9606
YLPPATQVVLISATLPHEILEMTNK	1	0	Oxidation (M)	2793.4987	0.49865316	696	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	1	0	13	0													2				23.098	23.098	3	0.019861	19264	DP690-13	45.596	35.329			0.6624	0.7647	NaN	1	0	Median	18600000	13121000	5478200	16777	696	15684	33045;33046	79980;79981;79982	79981	1019	3	9606
YLQDLLAWVEENQHR	0	1	Unmodified	1912.9432	0.94316041	1319	Q15149	PLEC	Plectin	yes	yes	0	0	0	9.75	0.829									2	1	1						22.046	22.046	2;3	7.4368E-09	19306	DP690-11	195.94	144.21			0.87877	1.0579	8.0306	3	0	Median	238840000	126650000	112190000	16778	1319	15685	33047;33048;33049;33050	79983;79984;79985;79986;79987;79988;79989;79990;79991;79992;79993;79994;79995;79996;79997;79998	79988		16	9606
YLQDSTFATSPHLESLLK	1	0	Unmodified	2049.0419	0.0418714	2025	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	12	0												2					18.707	18.707	2;3	9.5644E-14	14104	DP690-12	190.18	173.77			0.88299	1.0355	NaN	1	0	Median	95867000	52159000	43708000	16779	2025	15686	33051;33052	79999;80000;80001;80002;80003;80004	79999		6	9606
YLQEEVNINR	0	1	Unmodified	1276.6412	0.64116473	2344	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	12	0												1					14.396	14.396	2	9.1532E-05	8153	DP690-12	152.63	121.94			0.87802	1.0332	NaN	1	0	Median	86751000	44346000	42405000	16780	2344	15687	33053	80005;80006	80005		2	9606
YLQGMLEAGEGGDWPGPGGPR	0	1	Unmodified	2142.9793	0.97928792	820	P50479	PDLIM4	PDZ and LIM domain protein 4	yes	yes	0	0	0	14	0														1			19.41	19.41	2	1.4849E-14	14864	DP690-14	162.41	134.73			1.0727	1.2768	NaN	1	0	Median	112800000	59038000	53765000	16781	820	15688	33054	80007;80008	80008		2	9606
YLQGVPEGVR	0	1	Unmodified	1116.5928	0.59275797	1436	Q5T440	IBA57	Putative transferase CAF17, mitochondrial	yes	yes	0	0	0	10	4						1								1			14.315	14.315	2	0.0082329	7911	DP690-14	86.136	35.432			1.0551	1.2671	NaN	1	0	Median	91962000	49416000	42545000	16782	1436	15689	33055;33056	80009;80010;80011	80009		3	9606
YLQLAEELIRPER	0	2	Unmodified	1628.8886	0.88860564	1280	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	1	11	0											2						18.507	18.507	3	0.00010614	14532	DP690-11	116.03	94.476			0.66563	0.82053	5.9342	2	0	Median	181850000	107980000	73871000	16783	1280	15690	33057;33058	80012;80013;80014;80015	80014		4	9606
YLSLLYPAR	0	1	Unmodified	1094.6124	0.61243078	2371	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	yes	yes	0	0	0	2	0		1															18.485	18.485	2	0.0046298	11843	DP690-2	101.28	54.858			1.0873	1.1107	NaN	1	0	Median	2829300	1327200	1502100	16784	2371	15691	33059	80016;80017;80018	80016		3	9606
YLSVQGQLFR	0	1	Unmodified	1209.6506	0.6506072	2273	Q9NZJ7	MTCH1	Mitochondrial carrier homolog 1	yes	yes	0	0	0	14	0														1			17.63	17.63	2	0.015664	12530	DP690-14	84.498	57.609			0.85057	1.0303	NaN	1	0	Median	40724000	19738000	20986000	16785	2273	15692	33060	80019;80020	80020		2	9606
YLTAEAFGFK	1	0	Unmodified	1145.5757	0.57571092	1366	Q16658	FSCN1	Fascin	yes	yes	0	0	0	8	4				1								1					18.902	18.902	2	0.00014873	14437	DP690-12	135.83	99.435			0.86607	0.97745	4.1971	2	0	Median	115970000	62341000	53632000	16786	1366	15693	33061;33062	80021;80022;80023;80024;80025;80026;80027;80028	80022		8	9606
YLTLDGFDAMFR	0	1	Unmodified	1447.6806	0.6805867	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	11	0											3						22.952	22.952	2	0.0060035	20541	DP690-11	112.11	55.544			NaN	NaN	NaN	0	0	Median	4006100	0	4006100	16787	1531	15694	33063;33064;33065	80029;80030;80031	80030		3	9606
YLTMDDLTTALEGNR	0	1	Oxidation (M)	1727.8036	0.80361496	888	P54687	BCAT1	Branched-chain-amino-acid aminotransferase, cytosolic	yes	yes	0	1	0	6	0						1											18.831	18.831	2	2.6839E-05	12667	DP690-6	143.97	113.64			0.73986	0.84888	NaN	1	0	Median	8475700	4758400	3717300	16788	888	15695	33066	80032;80033;80034;80035	80032	1349	4	9606
YLTQVATGQPHEGSSYSSR	0	1	Unmodified	2066.9657	0.96574634	2288	Q9P086	MED11	Mediator of RNA polymerase II transcription subunit 11	yes	yes	0	0	0	16	0																1	12.631	12.631	3	6.9079E-18	5427	DP690-16	209.33	195.06			0.67584	0.78602	NaN	1	0	Median	19653000	11093000	8559400	16789	2288	15696	33067	80036;80037;80038;80039;80040	80038		5	9606
YLTTAVITNK	1	0	Unmodified	1122.6285	0.62847478	920	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	13	0													1				14.589	14.589	2	0.050649	8283	DP690-13	64.04	42.577			0.83227	0.94102	NaN	1	0	Median	136650000	74613000	62033000	16790	920	15697	33068	80041;80042	80042		2	9606
YLTVAAIFR	0	1	Unmodified	1052.6019	0.6018661	2017	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	9	4					1								1				20.047	20.047	2	0.00089084	14380	DP690-5	127.12	74.434			1.0198	1.1441	1.1791	2	0	Median	127430000	63411000	64022000	16791	2017	15698	33069;33070	80043;80044;80045;80046	80045		4	9606
YLTVAAVFR	0	1	Unmodified	1038.5862	0.58621603	1034;406;370	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	9.62	4.25			1	1	1	1	1	1	1				4		1	1	19.403	19.403	2	2.2244E-09	13830	DP690-13	203.41	153.82			1.1491	1.2825	18.739	11	0	Median	5399300000	2698100000	2701200000	16792	406;1034;370	15699	33071;33072;33073;33074;33075;33076;33077;33078;33079;33080;33081;33082;33083	80047;80048;80049;80050;80051;80052;80053;80054;80055;80056;80057;80058;80059;80060;80061;80062;80063;80064;80065;80066;80067;80068;80069;80070;80071;80072;80073;80074;80075;80076;80077;80078;80079;80080;80081;80082;80083;80084;80085;80086;80087	80053		41	9606
YLTVATVFR	0	1	Unmodified	1068.5968	0.59678072	2010;1217	Q13509;Q9BUF5	TUBB3;TUBB6	Tubulin beta-3 chain;Tubulin beta-6 chain	no	no	0	0	0	9	4					1								1				18.424	18.424	2	0.00046137	13375	DP690-13	188.81	148.54			1.0295	1.1253	8.825	2	0	Median	300950000	149120000	151830000	16793	1217;2010	15700	33084;33085	80088;80089;80090;80091;80092;80093;80094;80095	80088		8	9606
YLVALGHAYHPEEFVCSQCGK	1	0	Unmodified	2464.1304	0.13038561	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	13	0													2				16.43	16.43	3;4	9.6739E-07	10778	DP690-13	128.94	122.33			0.81837	0.93514	10.878	2	0	Median	199040000	112300000	86737000	16794	2194	15701	33086;33087	80096;80097;80098;80099;80100;80101	80101		6	9606
YLVLDEADR	0	1	Unmodified	1092.5451	0.54513908	96	O00571;O15523;Q9NQI0	DDX3X;DDX3Y;DDX4	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4	yes	no	0	0	0	9	3.56				1							1	1					15.925	15.925	2	0.00075779	9767	DP690-4	135.77	92.852			0.95859	1.0558	6.5788	3	0	Median	742780000	357950000	384830000	16795	96	15702	33088;33089;33090	80102;80103;80104;80105;80106;80107;80108;80109;80110	80109		9	9606
YLVMDEADR	0	1	Oxidation (M)	1126.4965	0.49647433	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	1	0	13	0													1				12.895	12.895	2	0.029746	5662	DP690-13	81.548	63.562			0.85112	1.0266	NaN	1	0	Median	77852000	38414000	39439000	16796	2090	15703	33091	80111;80112;80113	80113	2606	3	9606
YLVMDEADR	0	1	Unmodified	1110.5016	0.5015597	2090	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	13	0													1				14.899	14.899	2	0.0063627	8545	DP690-13	94.302	61.462			0.87094	1.0342	NaN	1	0	Median	110290000	57993000	52300000	16797	2090	15703	33092	80114;80115;80116;80117	80115		4	9606
YLVNPEGQVVK	1	0	Unmodified	1244.6765	0.6764876	1723	Q8TED1	GPX8	Probable glutathione peroxidase 8	yes	yes	0	0	0	15	0															1		14.819	14.819	2	0.0012879	8482	DP690-15	104.2	66.722			0.71917	0.80225	NaN	1	0	Median	118790000	68217000	50569000	16798	1723	15704	33093	80118;80119;80120	80120		3	9606
YLVQDTDEFILPTGANK	1	0	Unmodified	1922.9626	0.96255845	118	O14925;Q5SRD1	TIMM23;TIMM23B	Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B	yes	no	0	0	0	15	0															1		19.627	19.627	2	1.4102E-17	14694	DP690-15	213.99	213.99			0.67294	0.7788	NaN	1	0	Median	4580100	2582200	1997900	16799	118	15705	33094	80121;80122;80123;80124;80125;80126	80123		6	9606
YLVVNADEGEPGTCK	1	0	Unmodified	1650.7559	0.75593649	809	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	yes	yes	0	0	0	13	0													1				14.674	14.674	2	0.053174	8248	DP690-13	84.188	27.784			NaN	NaN	NaN	0	0	Median	6839200	6839200	0	16800	809	15706	33095	80127	80127		1	9606
YLVYAILWSLSGDSR	0	1	Unmodified	1741.9039	0.90392136	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	9	0									1								24.851	24.851	2	0.0095454	20401	DP690-9	121.02	69.769			NaN	NaN	NaN	0	0	Median	0	0	0	16801	1264	15707	33096	80128	80128		1	9606
YLVYGDEYK	1	0	Unmodified	1148.539	0.53899107	1453	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	9	0									1								15.207	15.207	2	0.062993	8778	DP690-9	63.419	49.649			0.74489	0.95072	NaN	1	0	Median	9954800	5340600	4614200	16802	1453	15708	33097	80129	80129		1	9606
YLYAFSIVPMK	1	0	Oxidation (M)	1346.6944	0.69444585	1464	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	1	0	12	0												1					19.672	19.672	2	0.018005	15440	DP690-12	76.827	58.296			0.74882	0.90297	NaN	1	0	Median	16196000	8492900	7703200	16803	1464	15709	33098	80130	80130	2160	1	9606
YLYEIAR	0	1	Unmodified	926.48617	0.48616764	37	CON__P02769			no	no	0	0	0	3	1		1		1													15.289	15.289	2	0.00026035	8050	DP690-2	143.18	0		+	NaN	NaN	NaN	0	0	Median	102440000	102440000	0	16804	37	15710	33099;33100	80131;80132;80133	80132		3	
YLYHGNTNPELAFESAK	1	0	Unmodified	1952.9268	0.92684164	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	10	0										1							15.948	15.948	2	0.070453	10919	DP690-10	85.45	59.338			NaN	NaN	NaN	0	0	Median	0	0	0	16805	1783	15711	33101	80134	80134		1	9606
YLYLTPQDYK	1	0	Unmodified	1302.6496	0.64960415	1179	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1															17.378	17.378	2	0.0013167	10559	DP690-2	106.68	81.557			0.92139	0.92433	NaN	1	0	Median	5311700	2489500	2822200	16806	1179	15712	33102	80135	80135		1	9606
YLYPNIDKDHAFGK	2	0	Unmodified	1679.8308	0.83075641	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	1	3	0			1														14.73	14.73	4	5.9976E-05	8349	DP690-3	110.92	80.356			0.78739	0.84421	NaN	1	0	Median	49138000	27557000	21581000	16807	724	15713	33103	80136;80137	80137		2	9606
YLYSSEDYIK	1	0	Unmodified	1279.5972	0.59723423	1190	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	3	0			1														16.128	16.128	2	0.0029405	10148	DP690-3	96.034	65.465			1.4664	1.564	NaN	1	0	Median	26059000	10933000	15126000	16808	1190	15714	33104	80138;80139;80140;80141	80139		4	9606
YLYTLVITDK	1	0	Unmodified	1227.6751	0.67509062	1018	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	0	16	0																1	18.788	18.788	2	0.046718	13248	DP690-16	65.347	38.3			0.98109	1.1434	NaN	1	0	Median	4348700	2435700	1913000	16809	1018	15715	33105	80142;80143	80142		2	9606
YLYTLVITDKEK	2	0	Unmodified	1484.8126	0.81264673	1018	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	1	16	0																2	16.554	16.554	2;3	0.00040348	10517	DP690-16	105.36	72.042			0.87982	0.98855	8.7858	2	0	Median	103900000	47089000	56816000	16810	1018	15716	33106;33107	80144;80145;80146;80147;80148;80149	80147		6	9606
YMACCLLYR	0	1	Oxidation (M)	1264.5403	0.54027017	1032;1521;1977;1033;11	P68363;Q71U36;Q9BQE3;P68366;A6NHL2	TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBAL3	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3	no	no	0	1	0	9.17	4.56				1	2								2		1		16.222	16.222	2	0.00081497	9069	DP690-5	151.17	130.23			1.0945	1.2117	14.579	6	0	Median	1584699999.9999998	772590000	812080000	16811	1032;1521;1977;1033;11	15717	33108;33109;33110;33111;33112;33113	80150;80151;80152;80153;80154;80155;80156;80157;80158;80159;80160;80161;80162;80163;80164	80161	14	15	9606
YMACCLLYR	0	1	Unmodified	1248.5454	0.54535555	1032;1521;1977;1033;11	P68363;Q71U36;Q9BQE3;P68366;A6NHL2	TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBAL3	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3	no	no	0	0	0	9	4					1								1				16.916	16.916	2	0.00013826	11335	DP690-13	170.17	137.35			1.0632	1.1239	4.8573	2	0	Median	856300000	423910000	432390000	16812	1032;1521;1977;1033;11	15717	33114;33115	80165;80166;80167;80168;80169;80170;80171;80172;80173	80168		9	9606
YMDLLWR	0	1	Unmodified	995.48987	0.48987281	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	11	0											1						19.94	19.94	2	0.023402	16445	DP690-11	119.22	70.66			NaN	NaN	NaN	0	0	Median	27624000	27624000	0	16813	272	15718	33116	80174;80175	80175		2	9606
YMDVQFDFK	1	0	Oxidation (M)	1207.522	0.52196079	65	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	1	0	11	0											1						17.222	17.222	2	0.087053	12641	DP690-11	66.692	17.898			0.70459	0.85205	NaN	1	0	Median	45621000	26096000	19525000	16814	65	15719	33117	80176	80176		1	9606
YMEAFKPFLGIGLK	2	0	Oxidation (M)	1628.8636	0.86363645	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	1	1	7	4			1								1						19.068	19.068	3	0.002242	13962	DP690-3	78.486	78.486			0.88967	1.0049	22.125	2	0	Median	65525000	34713000	30812000	16815	1300	15720	33118;33119	80177;80178;80179	80178	1991	3	9606
YMEAFKPFLGIGLK	2	0	Unmodified	1612.8687	0.86872182	1300	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	11	0											1						20.48	20.48	3	0.039613	17300	DP690-11	52.265	28.868			0.87096	1.0338	NaN	1	0	Median	38718000	18349000	20369000	16816	1300	15720	33120	80180	80180		1	9606
YMEDMEQAFETCQAAER	0	1	2 Oxidation (M)	2139.8184	0.8183551	2376	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	2	0	13	0													3				14.459	14.459	2	2.7445E-12	7971	DP690-13	198.37	187.43			0.62064	0.76383	NaN	1	0	Median	17049000	10582000	6466600	16817	2376	15721	33121;33122;33123	80181;80182;80183;80184;80185	80181	2803;2804	5	9606
YMEDMEQAFETCQAAER	0	1	Oxidation (M)	2123.8234	0.82344048	2376	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	1	0	13	0													1				17.136	17.136	2	0.0082662	11676	DP690-13	120.14	104.75			NaN	NaN	NaN	0	0	Median	0	0	0	16818	2376	15721	33124	80186	80186	2803;2804	1	9606
YMEDSTYYK	1	0	Oxidation (M)	1214.4802	0.48015556	1117	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	1	0	3	0			1														12.188	12.188	2	0.024781	4882	DP690-3	84.568	69.307			0.56505	0.59345	NaN	1	0	Median	6318800	2530900	3787800	16819	1117	15722	33125	80187	80187	1733	1	9606
YMIGVTYGGDDIPLSPYR	0	1	Oxidation (M)	2031.9612	0.96117824	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	9.33	0.471									2	1							19.684	19.684	2	1.2864E-12	16299	DP690-10	179.59	164.2			0.61044	0.76133	7.6076	2	0	Median	89492000	55415000	34077000	16820	250	15723	33126;33127;33128	80188;80189;80190;80191;80192;80193;80194;80195	80188	255	8	9606
YMLLPNQVWDSIIQQATK	1	0	Unmodified	2147.1085	0.10851118	128	O14980	XPO1	Exportin-1	yes	yes	0	0	0	11	0											1						25.059	25.059	2	2.1091E-09	22961	DP690-11	155.88	155.88			1.2813	1.551	NaN	1	0	Median	5441900	3200700	2241200	16821	128	15724	33129	80196;80197;80198;80199;80200;80201	80197		6	9606
YMLLPNQVWDSIIQQATK	1	0	Oxidation (M)	2163.1034	0.1034258	128	O14980	XPO1	Exportin-1	yes	yes	0	1	0	11	0											1						24.069	24.069	2	0.001131	21858	DP690-11	119.88	83.034			NaN	NaN	NaN	0	0	Median	2977600	2977600	0	16822	128	15724	33130	80202	80202	149	1	9606
YMNSDTTSPELR	0	1	Unmodified	1412.6242	0.62419403	1927	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	10	0										1							13.395	13.395	2	0.0063212	7253	DP690-10	82.261	55.372			0.71912	0.89557	NaN	1	0	Median	21913000	13722000	8190500	16823	1927	15725	33131	80203	80203		1	9606
YMPQNPCIIATK	1	0	Oxidation (M)	1450.6949	0.69485656	1142	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	1	0	13	0													1				14.096	14.096	2	0.013536	7436	DP690-13	77.533	44.674			0.68461	0.76757	NaN	1	0	Median	170000000	98879000	71117000	16824	1142	15726	33132	80204	80204	1758	1	9606
YMPQNPHIIATK	1	0	Oxidation (M)	1427.7231	0.72312022	1360	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	1	0	13	0													1				11.903	11.903	3	0.012902	4509	DP690-13	67.252	48.614			0.60853	0.70315	NaN	1	0	Median	63792000	37903000	25889000	16825	1360	15727	33133	80205;80206;80207;80208	80206	2107	4	9606
YMSPEQISSQDYGK	1	0	Unmodified	1631.7137	0.71373732	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	12	0												1					15.121	15.121	2	2.6581E-05	9235	DP690-12	123.01	105.98			0.92603	1.1085	NaN	1	0	Median	32222000	11721000	20501000	16826	538	15728	33134	80209;80210;80211	80210		3	9606
YMSPEQISSQDYGK	1	0	Oxidation (M)	1647.7087	0.70865195	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	1	0	9.5	5.5				1											1		13.789	13.789	2	0.0044663	6962	DP690-4	113.22	75.749			NaN	NaN	NaN	0	0	Median	3951500	3951500	0	16827	538	15728	33135;33136	80212;80213;80214	80214	688	3	9606
YMSPMEAQEFGILDK	1	0	2 Oxidation (M)	1789.7903	0.79027309	1368	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	0	2	0	15	0															1		17.645	17.645	2	0.001532	12259	DP690-15	126.34	72.747			NaN	NaN	NaN	0	0	Median	2804000	2804000	0	16828	1368	15729	33137	80215;80216	80215	2114;2115	2	9606
YMTQFADQNFSDFLFR	0	1	Oxidation (M)	2044.8989	0.89891233	1738	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	1	0	11	0											1						22.343	22.343	2	1.0318E-06	19697	DP690-11	150.14	114.37			0.7144	0.88535	NaN	1	0	Median	8651300	5409700	3241600	16829	1738	15730	33138	80217;80218;80219;80220	80217	2315	4	9606
YMVADKFTELQK	2	0	Oxidation (M)	1487.733	0.7330162	624	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	1	1	4	0				2													14.451	14.451	2;3	9.5183E-05	7762	DP690-4	150.09	119.88			1.8477	1.9224	2.8786	2	0	Median	100230000	34840000	65394000	16830	624	15731	33139;33140	80221;80222;80223;80224;80225;80226	80221	864	6	9606
YNAQCQETIR	0	1	Unmodified	1281.5772	0.57718426	551	P21741	MDK	Midkine	yes	yes	0	0	0	16	0																1	11.051	11.051	2	0.0028951	3647	DP690-16	96.331	71.194			1.0523	1.233	NaN	1	0	Median	2649300	1253800	1395500	16831	551	15732	33141	80227;80228	80227		2	9606
YNDFVVFQEMLLHK	1	0	Oxidation (M)	1797.876	0.87599205	2508	Q9Y5X2	SNX8	Sorting nexin-8	yes	yes	0	1	0	13	0													1				19.798	19.798	3	0.018326	15163	DP690-13	58.268	58.268			0.80278	0.91875	NaN	1	0	Median	11258000	5380000	5878200	16832	2508	15733	33142	80229	80229	2940	1	9606
YNEQHVPGSPFTAR	0	1	Unmodified	1601.7587	0.7586541	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.33	2.71		1							2	2	4						13.615	13.615	2;3	7.8671E-14	7405	DP690-10	216.91	189.27			0.71109	0.7591	10.41	6	0	Median	5113400000	2821400000	2292100000	16833	549	15734	33143;33144;33145;33146;33147;33148;33149;33150;33151	80230;80231;80232;80233;80234;80235;80236;80237;80238;80239;80240;80241;80242;80243;80244;80245;80246;80247;80248;80249;80250;80251;80252;80253;80254	80238		25	9606
YNFFCQGTR	0	1	Unmodified	1191.5131	0.51312744	2265	Q9NYP7	ELOVL5	Elongation of very long chain fatty acids protein 5	yes	yes	0	0	0	9	0									1								16.518	16.518	2	0.0049443	10500	DP690-9	100.02	64.572			0.79996	0.99832	NaN	1	0	Median	15732000	8293700	7437900	16834	2265	15735	33152	80255;80256;80257;80258	80257		4	9606
YNFFTGCPK	1	0	Unmodified	1132.5012	0.50116577	1959	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	8	4				1								1					16.762	16.762	2	0.019994	10903	DP690-4	79.474	64.8			1.0561	1.1935	40.282	2	0	Median	113290000	57924000	55366000	16835	1959	15736	33153;33154	80259;80260	80260		2	9606
YNFLPEALDFVGVHQER	0	1	Unmodified	2033.0007	0.0006752871	1427	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	10	0										1							21.482	21.482	3	0.00069224	18764	DP690-10	85.362	63.481			1.1268	1.4047	NaN	1	0	Median	72714000	36597000	36116000	16836	1427	15737	33155	80261;80262;80263	80261		3	9606
YNFPNPNPFVEDDMDKNEIASVAYR	1	1	Oxidation (M)	2960.3287	0.3286873	154	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	1	1	12	0												1					19.443	19.443	3	0.00011124	15153	DP690-12	109.23	89.153			0.6421	0.81682	NaN	1	0	Median	35579000	20492000	15087000	16837	154	15738	33156	80264;80265;80266;80267;80268	80267	175	5	9606
YNFPVEVEVPMER	0	1	Oxidation (M)	1623.7603	0.76029359	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									1	1							18.768	18.768	2	0.0019958	13252	DP690-9	100.69	83.52			0.70033	0.8353	2.0841	2	0	Median	207930000	119640000	88291000	16838	1046	15739	33157;33158	80269;80270;80271;80272;80273;80274	80274	1635	6	9606
YNFPVEVEVPMER	0	1	Unmodified	1607.7654	0.76537896	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							19.798	19.798	2	7.4809E-05	14634	DP690-9	136.96	86.507			0.74923	0.93171	3.5373	2	0	Median	116430000	64281000	52145000	16839	1046	15739	33159;33160	80275;80276;80277;80278;80279;80280;80281	80278		7	9606
YNGVFQECCQAEDK	1	0	Unmodified	1746.6978	0.69776968	37	CON__P02769			yes	yes	0	0	0	4	0				2													14.171	14.171	2	0.0049287	7486	DP690-4	116.74	102.06		+	NaN	NaN	NaN	0	0	Median	3771600	3771600	0	16840	37	15740	33161;33162	80282;80283	80282		2	
YNHIDESEMK	1	0	Unmodified	1264.5394	0.53940177	1778	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	3	0			1														10.896	10.896	2	0.0026345	3279	DP690-3	98.04	53.691			1.1327	1.1933	NaN	1	0	Median	7910200	3916000	3994200	16841	1778	15741	33163	80284;80285;80286;80287	80284		4	9606
YNIEKDIAAHIK	2	0	Unmodified	1413.7616	0.76161421	1016	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	yes	yes	0	0	1	12	4								1								1	15.351	15.351	3	4.3237E-05	8946	DP690-16	133.05	105.9			0.82681	0.92174	0.90575	2	0	Median	690020000	372100000	317920000	16842	1016	15742	33164;33165	80288;80289;80290;80291;80292	80290		5	9606
YNIEKDIAAHIKK	3	0	Unmodified	1541.8566	0.85657723	1016	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	yes	yes	0	0	2	16	0																1	14.122	14.122	3	4.4008E-05	7313	DP690-16	151.16	131.06			0.8924	1.0976	NaN	1	0	Median	313600000	162130000	151470000	16843	1016	15743	33166	80293;80294;80295;80296	80294		4	9606
YNILGTNTIMDK	1	0	Oxidation (M)	1397.6861	0.68606601	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	0	7	4			1								1						16.475	16.475	2	0.00047404	10576	DP690-3	147.62	116.09			0.88036	0.95988	2.0782	2	0	Median	250390000	138420000	111980000	16844	1078	15744	33167;33168	80297;80298;80299;80300;80301;80302	80302	1688	6	9606
YNILGTNTIMDK	1	0	Unmodified	1381.6912	0.69115139	1078	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	9.4	3.2			1								4						18.086	18.086	2	0.0020274	13866	DP690-11	148.56	63.396			1.0105	1.0781	NaN	1	0	Median	125890000	118610000	7281500	16845	1078	15744	33169;33170;33171;33172;33173	80303;80304;80305;80306;80307;80308	80306		6	9606
YNIPHGPVVGSTR	0	1	Unmodified	1395.7259	0.72589741	817	P50402	EMD	Emerin	yes	yes	0	0	0	14	0														2			13.682	13.682	2	0.017561	6990	DP690-14	94.616	58.282			NaN	NaN	NaN	0	0	Median	26335000	26335000	0	16846	817	15745	33174;33175	80309;80310	80309		2	9606
YNISDPLMALQR	0	1	Unmodified	1419.718	0.71803484	2302	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	11	0											1						20.084	20.084	2	0.023643	16773	DP690-11	70.056	26.775			0.94201	1.1252	NaN	1	0	Median	30852000	18583000	12269000	16847	2302	15746	33176	80311	80311		1	9606
YNIWCSTEHGNKR	1	1	Unmodified	1663.7525	0.75252287	2497	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	1	12	0												1					11.996	11.996	3	0.0003717	4830	DP690-12	99.5	99.5			0.88655	1.101	NaN	1	0	Median	48225000	23750000	24476000	16848	2497	15747	33177	80312;80313	80312		2	9606
YNLTSDIIESIFR	0	1	Unmodified	1569.8039	0.80387296	646	P32780	GTF2H1	General transcription factor IIH subunit 1	yes	yes	0	0	0	12	0												1					24.668	24.668	2	0.00017812	21249	DP690-12	120.06	55.221			0.92644	1.1308	NaN	1	0	Median	2333400	1212300	1121200	16849	646	15748	33178	80314;80315;80316;80317	80317		4	9606
YNPENLATLER	0	1	Unmodified	1318.6517	0.65172941	2319	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	0	15	0															1		16.278	16.278	2	0.0012617	10559	DP690-15	104.42	78.36			0.92427	1.0571	NaN	1	0	Median	40803000	18467000	22335000	16850	2319	15749	33179	80318;80319	80319		2	9606
YNPNVLPVQCTGK	1	0	Unmodified	1488.7395	0.73949856	380	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	13	0													1				14.902	14.902	2	0.0019649	8626	DP690-13	133.91	95.162			NaN	NaN	NaN	0	0	Median	24190000	0	24190000	16851	380	15750	33180	80320;80321	80321		2	9606
YNPTWHCIVGR	0	1	Unmodified	1401.6612	0.66118866	1016;1852	Q96FJ2;P63167	DYNLL2;DYNLL1	Dynein light chain 2, cytoplasmic;Dynein light chain 1, cytoplasmic	no	no	0	0	0	12	4								2								2	14.819	14.819	2;3	0.00010876	7919	DP690-8	133.13	122.76			0.83597	0.94117	8.6161	4	0	Median	134490000	72583000	61909000	16852	1852;1016	15751	33181;33182;33183;33184	80322;80323;80324;80325;80326;80327;80328;80329;80330;80331;80332;80333;80334;80335;80336;80337;80338;80339;80340;80341;80342	80340		21	9606
YNQATPNFHQWR	0	1	Unmodified	1560.7222	0.72220902	821	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	13	0													1				13.966	13.966	3	0.0027096	7315	DP690-13	84.188	58.659			0.78395	0.93752	NaN	1	0	Median	96374000	52530000	43844000	16853	821	15752	33185	80343;80344	80343		2	9606
YNSALDTNATMINSFNK	1	0	Oxidation (M)	1918.8731	0.87309151	2528	Q9Y6X8	ZHX2	Zinc fingers and homeoboxes protein 2	yes	yes	0	1	0	11	0											1						16.089	16.089	2	0.048573	10984	DP690-11	89.231	50.271			NaN	NaN	NaN	0	0	Median	0	0	0	16854	2528	15753	33186	80345	80345		1	9606
YNTWVLQDTVLESHLQLLSTILSSAQGLK	1	0	Unmodified	3256.7343	0.73434342	2127	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	11	0											1						26.08	26.08	3	2.6694E-09	24011	DP690-11	143.36	136.76			0.83922	1.0376	NaN	1	0	Median	15429000	8132500	7296400	16855	2127	15754	33187	80346;80347;80348;80349;80350	80347		5	9606
YNVPLNR	0	1	Unmodified	874.4661	0.4661009	2340	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	11	0											2						13.148	13.148	2	0.043876	6656	DP690-11	132.8	80.167			NaN	NaN	NaN	0	0	Median	0	0	0	16856	2340	15755	33188;33189	80351;80352	80352		2	9606
YPASTVQILGAEK	1	0	Unmodified	1375.7347	0.73473076	95	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	12	0												1					16.165	16.165	2	0.0072198	10680	DP690-12	106.67	65.384			NaN	NaN	NaN	0	0	Median	32497000	0	32497000	16857	95	15756	33190	80353;80354	80354		2	9606
YPDLYPQEDEDEEEEREK	1	1	Unmodified	2311.9604	0.96044577	1655	Q8N4Q1	CHCHD4	Mitochondrial intermembrane space import and assembly protein 40	yes	yes	0	0	1	16	0																1	14.983	14.983	3	1.1817E-11	8525	DP690-16	171.78	167.1			0.61294	0.70955	NaN	1	0	Median	8286400	4940000	3346400	16858	1655	15757	33191	80355;80356;80357	80357		3	9606
YPEAQSVASDILR	0	1	Unmodified	1447.7307	0.73070802	1946	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	8	4				1								1					17.947	17.947	2	1.6141E-05	12202	DP690-4	183.33	153.78			0.85437	0.99297	12.92	2	0	Median	75080000	42691000	32389000	16859	1946	15758	33192;33193	80358;80359;80360;80361;80362;80363;80364;80365	80364		8	9606
YPEETLSLMTK	1	0	Oxidation (M)	1326.6377	0.63771883	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	5.5	3.5		1							1								15.437	15.437	2	0.0001628	9024	DP690-9	163.88	113.17			0.83028	0.88016	5.6331	2	0	Median	112930000	66019000	46915000	16860	1046	15759	33194;33195	80366;80367;80368;80369;80370	80368	1614	5	9606
YPEETLSLMTK	1	0	Unmodified	1310.6428	0.64280421	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9	0									1								17.277	17.277	2	0.00010246	11444	DP690-9	145.9	91.699			0.72785	0.85539	NaN	1	0	Median	53960000	30955000	23006000	16861	1046	15759	33196	80371;80372	80371		2	9606
YPENFFLLR	0	1	Unmodified	1197.6182	0.61824444	963;683;964	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	10	4						1								1			20.401	20.401	2	0.00057737	14404	DP690-6	147.34	67.107			0.7778	0.93954	NaN	1	0	Median	64827000	34454000	30373000	16862	963;964;683	15760	33197;33198	80373;80374;80375;80376;80377;80378	80377		6	9606
YPFESAEAQLLNK	1	0	Unmodified	1508.7511	0.75110911	574	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	3	0			1														18.968	18.968	2	9.4355E-25	13771	DP690-3	211.37	153.82			NaN	NaN	NaN	0	0	Median	11276000	0	11276000	16863	574	15761	33199	80379;80380	80379		2	9606
YPFILPHQQVDK	1	0	Unmodified	1483.7823	0.78234966	2386	Q9ULC4;A0A3B3IRV3	MCTS1	Malignant T-cell-amplified sequence 1	yes	no	0	0	0	13	3.56								1							1	1	15.705	15.705	3	1.9019E-05	9783	DP690-15	139.31	115.03			0.77258	0.88273	6.5869	3	0	Median	204370000	125710000	78658000	16864	2386	15762	33200;33201;33202	80381;80382;80383;80384;80385;80386;80387;80388;80389	80383		9	9606
YPFPILINSAFLK	1	0	Unmodified	1521.8595	0.85953735	2233	Q9NVH2	INTS7	Integrator complex subunit 7	yes	yes	0	0	0	11	0											1						23.174	23.174	2	3.6268E-05	20726	DP690-11	147.28	128.75			0.74711	0.91949	NaN	1	0	Median	18966000	10309000	8657100	16865	2233	15763	33203	80390;80391;80392;80393;80394;80395	80395		6	9606
YPGHLAAITLSR	0	1	Unmodified	1297.7143	0.71427009	2146	Q9H9F9	ACTR5	Actin-related protein 5	yes	yes	0	0	0	12	0												1					15.042	15.042	3	0.011284	8934	DP690-12	87.719	54.86			NaN	NaN	NaN	0	0	Median	51495000	0	51495000	16866	2146	15764	33204	80396	80396		1	9606
YPIEHGIITNWDDMEK	1	0	Unmodified	1959.9037	0.90366336	1029	P68032;P68133;P63267;P62736	ACTC1;ACTA1;ACTG2;ACTA2	Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	yes	no	0	0	0	13.1	2.14						1			1	1			2	14	1		21.619	21.619	2;3	3.3708E-18	11540	DP690-14	206.32	157.37			0.79283	0.92697	11.106	17	0	Median	30251000000	16710000000	13541000000	16867	1029	15765	33205;33206;33207;33208;33209;33210;33211;33212;33213;33214;33215;33216;33217;33218;33219;33220;33221;33222;33223;33224	80397;80398;80399;80400;80401;80402;80403;80404;80405;80406;80407;80408;80409;80410;80411;80412;80413;80414;80415;80416;80417;80418;80419;80420;80421;80422;80423;80424;80425;80426;80427;80428;80429;80430;80431;80432;80433;80434;80435;80436;80437;80438;80439;80440;80441;80442;80443;80444;80445;80446;80447;80448;80449;80450	80435		53	9606
YPIEHGIITNWDDMEK	1	0	Oxidation (M)	1975.8986	0.89857798	1029	P68032;P68133;P63267;P62736	ACTC1;ACTA1;ACTG2;ACTA2	Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	yes	no	0	1	0	12.8	2.62						2			1				2	13	1		19.802	19.802	2;3	4.5173E-07	10408	DP690-14	169.09	140.38			0.81585	0.92133	15.64	16	0	Median	21854000000	11990000000	9864600000	16868	1029	15765	33225;33226;33227;33228;33229;33230;33231;33232;33233;33234;33235;33236;33237;33238;33239;33240;33241;33242;33243	80451;80452;80453;80454;80455;80456;80457;80458;80459;80460;80461;80462;80463;80464;80465;80466;80467;80468;80469;80470;80471;80472;80473;80474;80475;80476;80477;80478;80479;80480;80481;80482;80483;80484;80485;80486;80487;80488;80489;80490;80491;80492	80459	1562	41	9606
YPIEHGIITNWDDMEKIWHHTFYNELR	1	1	Oxidation (M)	3472.6299	0.62989512	1029	P68032;P68133	ACTC1;ACTA1	Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	yes	no	0	1	1	14	0														3			24.022	24.022	5;6	4.324E-05	13726	DP690-14	83.826	67.624			0.7557	0.76927	12.75	3	0	Median	2695700000	1479699999.9999998	1216000000	16869	1029	15766	33244;33245;33246	80493;80494;80495;80496;80497;80498;80499;80500;80501;80502	80497	1562	10	9606
YPIEHGIITNWDDMEKIWHHTFYNELR	1	1	Unmodified	3456.635	0.6349805	1029	P68032;P68133	ACTC1;ACTA1	Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	yes	no	0	0	1	14	0														2			20.763	20.763	5;6	1.585E-05	16594	DP690-14	108.96	108.96			0.84313	1.0047	1.0963	2	0	Median	171460000	79657000	91803000	16870	1029	15766	33247;33248	80503;80504;80505;80506;80507	80505		5	9606
YPIEHGIVTNWDDMEK	1	0	Unmodified	1945.888	0.88801329	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	14	0														2			17.42	17.42	2;3	2.0369E-32	12232	DP690-14	300.49	248.64			0.77755	0.88138	8.6144	2	0	Median	1312600000	744560000	568000000	16871	926;1023	15767	33249;33250	80508;80509;80510;80511;80512;80513	80511		6	9606
YPIEHGIVTNWDDMEKIWHHTFYNELR	1	1	Oxidation (M)	3458.6142	0.61424506	926;1023	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	1	14	0														1			18.619	18.619	5	0.041436	13882	DP690-14	47.7	27.474			NaN	NaN	NaN	0	0	Median	63729000	63729000	0	16872	926;1023	15768	33251	80514	80514	1430	1	9606
YPLFEGQETGK	1	0	Unmodified	1267.6085	0.60846762	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	3	0			1														15.45	15.45	2	0.0039779	9342	DP690-3	125.71	50.67			NaN	NaN	NaN	0	0	Median	10127000	10127000	0	16873	720	15769	33252	80515;80516;80517	80517		3	9606
YPLFEGQETGKK	2	0	Unmodified	1395.7034	0.70343063	720	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	1	3	0			2														13.329	13.329	2;3	1.9105E-05	6373	DP690-3	152.67	111.94			0.90669	0.96836	7.5689	2	0	Median	178370000	91467000	86899000	16874	720	15770	33253;33254	80518;80519;80520;80521;80522;80523;80524;80525;80526;80527	80526		10	9606
YPLIIDPSGQATEFIMNEYKDR	1	1	Oxidation (M)	2615.2578	0.25775419	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	1	9	0									1								20.953	20.953	3	0.0081888	16026	DP690-9	55.972	40.504			0.54554	0.63273	NaN	1	0	Median	6521900	4655000	1866900	16875	1264	15771	33255	80528;80529	80528	1932	2	9606
YPLNCADPTSER	0	1	Unmodified	1421.6245	0.62452839	1120	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	4	0				2													13.733	13.733	2	9.2467E-07	6906	DP690-4	161.17	102.02			NaN	NaN	NaN	0	0	Median	4831700	4831700	0	16876	1120	15772	33256;33257	80530;80531;80532	80531		3	9606
YPMAVGLNK	1	0	Oxidation (M)	1007.511	0.51100218	2478	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	0	12	4								1								1	13.053	13.053	2	0.0033539	5968	DP690-16	114.72	66.805			0.93863	1.0366	8.3025	2	0	Median	159710000	86581000	73125000	16877	2478	15773	33258;33259	80533;80534;80535;80536;80537	80536	2919	5	9606
YPPGSAFTGVDDFLDLQR	0	1	Unmodified	1996.9531	0.95305639	2563				yes	yes	0	0	0	13	0													1				21.647	21.647	2	0.00274	17588	DP690-13	76.927	31.959	+		0.73703	0.90879	NaN	1	0	Median	20975000	12020000	8955000	16878	2563	15774	33260	80538;80539;80540;80541	80540		4	9606
YPPPTELLDLQPLPVSALR	0	1	Unmodified	2118.1725	0.17249164	269	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	10	0										1							22.919	22.919	2	7.3456E-07	20635	DP690-10	141.59	141.59			1.0191	1.2804	NaN	1	0	Median	11354000	6116000	5237800	16879	269	15775	33261	80542;80543	80542		2	9606
YPQLLPGIR	0	1	Unmodified	1055.6128	0.61276513	571	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	5	0					1												18.199	18.199	2	0.0045407	12146	DP690-5	101.64	101.64			0.81827	0.84736	NaN	1	0	Median	108310000	59061000	49247000	16880	571	15776	33262	80544;80545;80546;80547;80548	80547		5	9606
YPSATNNTPAK	1	0	Unmodified	1162.5619	0.56185177	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0										1							10.5	10.5	2	0.0060134	2960	DP690-10	114.89	48.465			NaN	NaN	NaN	0	0	Median	111100000	111100000	0	16881	1724	15777	33263	80549	80549		1	9606
YPSPFFVFGEK	1	0	Unmodified	1316.6441	0.64412484	1137	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	10.3	0.471										2	1						21.164	21.164	2	0.02789	18123	DP690-10	94.409	58.898			NaN	NaN	NaN	0	0	Median	56368000	17265000	39103000	16882	1137	15778	33264;33265;33266	80550;80551;80552	80551		3	9606
YPSPPMGSVSAPNLPTAEDNLEYVR	0	1	Oxidation (M)	2719.2799	0.27994619	753	P46109	CRKL	Crk-like protein	yes	yes	0	1	0	6.5	0.5						1	1										18.711	18.711	2	2.1097E-31	12248	DP690-6	210.91	187.43			0.53033	0.55709	NaN	1	0	Median	184060000	122930000	61124000	16883	753	15779	33267;33268	80553;80554;80555;80556;80557;80558;80559;80560;80561;80562;80563;80564;80565;80566;80567	80556	1117	15	9606
YPSYGLNYYQQK	1	0	Unmodified	1522.7092	0.70924429	35	CON__P02668			yes	yes	0	0	0	6.38	5.19	1	1	1	1	1	1									2		16.234	16.234	2	2.7759E-58	9310	DP690-2	270.19	206.77		+	NaN	NaN	NaN	0	0	Median	182040000	182040000	0	16884	35	15780	33269;33270;33271;33272;33273;33274;33275;33276	80568;80569;80570;80571;80572;80573;80574;80575;80576;80577;80578;80579;80580;80581;80582;80583;80584	80573		17	
YPSYGLNYYQQKPVALINNQFLPYPYYAK	2	0	Unmodified	3514.7602	0.76016424	35	CON__P02668			yes	yes	0	0	1	4.5	2.29	1	1	1	1	1	1	1	1									20.99	20.99	3	1.2445E-23	15559	DP690-5	175.99	158.96		+	NaN	NaN	NaN	0	0	Median	123020000	123020000	0	16885	35	15781	33277;33278;33279;33280;33281;33282;33283;33284	80585;80586;80587;80588;80589;80590;80591;80592;80593;80594;80595;80596;80597;80598;80599;80600;80601	80595		17	
YPTFIDALR	0	1	Unmodified	1094.576	0.57604528	94	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	12	0												1					19.589	19.589	2	0.0032093	15363	DP690-12	107.01	68.232			0.78892	0.93759	NaN	1	0	Median	36593000	19291000	17302000	16886	94	15782	33285	80602;80603;80604;80605	80605		4	9606
YPTGESYQDLVQR	0	1	Unmodified	1554.7314	0.7314363	1373	Q16875	PFKFB3	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	0	4	0				1													16.061	16.061	2	0.011455	9938	DP690-4	106.35	56.998			NaN	NaN	NaN	0	0	Median	0	0	0	16887	1373	15783	33286	80606	80606		1	9606
YPVNSVNILK	1	0	Unmodified	1145.6445	0.64445919	520	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	8	4				1								1					16.202	16.202	2	0.00033722	10158	DP690-4	123.35	89.433			1.0903	1.2127	42.32	2	0	Median	164490000	81914000	82576000	16888	520	15784	33287;33288	80607;80608;80609;80610;80611;80612;80613;80614;80615;80616	80612		10	9606
YQCVVLTEMK	1	0	Oxidation (M)	1285.6046	0.60464457	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	1	0	3	0			1														13.967	13.967	2	0.071377	7299	DP690-3	66.568	43.248			0.83446	0.89026	NaN	1	0	Median	13177000	6304400	6872300	16889	5	15785	33289	80617	80617		1	9606
YQDVYVELSHIK	1	0	Unmodified	1492.7562	0.75619449	2101	Q9H2D6	TRIOBP	TRIO and F-actin-binding protein	yes	yes	0	0	0	12	0												1					16.905	16.905	3	0.016301	11631	DP690-12	84.169	45.153			NaN	NaN	NaN	0	0	Median	33676000	33676000	0	16890	2101	15786	33290	80618;80619	80618		2	9606
YQEAAPNVANNTGPHAASCFGAK	1	0	Unmodified	2374.076	0.07604185	216	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	7	4			1								1						13.44	13.44	3	2.5189E-15	7124	DP690-11	163.41	133.81			0.79035	0.9518	NaN	1	0	Median	94282000	55542000	38740000	16891	216	15787	33291;33292	80620;80621;80622;80623;80624;80625	80622		6	9606
YQEAEPGPLGSAVGSQR	0	1	Unmodified	1744.838	0.83802663	69	O00192	ARVCF	Armadillo repeat protein deleted in velo-cardio-facial syndrome	yes	yes	0	0	0	11	0											1						14.764	14.764	2	0.0004179	9092	DP690-11	137.84	97.963			NaN	NaN	NaN	0	0	Median	10531000	10531000	0	16892	69	15788	33293	80626	80626		1	9606
YQELPNSGPPHDR	0	1	Unmodified	1508.7008	0.70080487	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	8	4				1								1					11.248	11.248	3	0.0013183	3835	DP690-12	87.447	72.06			0.63397	0.74258	0.71059	2	0	Median	88033000	52758000	35275000	16893	538	15789	33294;33295	80627;80628;80629;80630;80631;80632;80633	80630		7	9606
YQELPNSGPPHDRR	0	2	Unmodified	1664.8019	0.8019159	538	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	1	12	0												1					10.462	10.462	4	0.0084755	2777	DP690-12	62.088	42.889			0.50685	0.57469	NaN	1	0	Median	96377000	70444000	25933000	16894	538	15790	33296	80634;80635	80634		2	9606
YQESQEPLNEVNSFPQK	1	0	Unmodified	2035.9487	0.9486993	1589	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	12.5	0.5												1	1				16.228	16.228	2	3.8109E-13	10523	DP690-12	210.41	180.86			0.57114	0.68482	NaN	1	0	Median	39561000	30071000	9490000	16895	1589	15791	33297;33298	80636;80637;80638;80639;80640;80641	80638		6	9606
YQFDAFYGER	0	1	Unmodified	1294.5619	0.56185177	1296	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	0	0	12	0												1					17.946	17.946	2	0.020728	13067	DP690-12	73.985	44.815			0.78329	0.94078	NaN	1	0	Median	19280000	9878800	9401600	16896	1296	15792	33299	80642	80642		1	9606
YQFLEEAFQNQK	1	0	Unmodified	1543.7307	0.73070802	2415	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	10	0										1							18.582	18.582	2	0.0015113	14709	DP690-10	100.02	0			0.99718	1.2319	NaN	1	0	Median	78593000	39848000	38745000	16897	2415	15793	33300	80643;80644	80643		2	9606
YQHLPYIQILSTK	1	0	Unmodified	1602.877	0.87697832	1995	Q9BT40	INPP5K	Inositol polyphosphate 5-phosphatase K	yes	yes	0	0	0	13	0													1				17.926	17.926	3	0.00043258	12732	DP690-13	99.941	99.941			1.0318	1.1946	NaN	1	0	Median	45143000	24554000	20589000	16898	1995	15794	33301	80645;80646	80645		2	9606
YQHTGAVLDCAFYDPTHAWSGGLDHQLK	1	0	Unmodified	3186.4618	0.46176716	185	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	14	0														3			23.561	23.561	4;5	7.0201E-06	12894	DP690-14	110.44	102.12			0.77177	0.86348	1.0698	2	0	Median	1012199999.9999999	545010000	467240000	16899	185	15795	33302;33303;33304	80647;80648;80649;80650;80651;80652;80653;80654;80655;80656	80651		10	9606
YQIDDKPNNQIR	1	1	Unmodified	1502.7478	0.74775506	2178	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	yes	yes	0	0	1	13	0													1				12.023	12.023	3	0.0024106	4690	DP690-13	83.081	60.589			0.72698	0.84823	NaN	1	0	Median	61349000	30469000	30879000	16900	2178	15796	33305	80657;80658	80657		2	9606
YQIDPDACFSAK	1	0	Unmodified	1413.6235	0.62346575	552	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	14	0														1			16.275	16.275	2	0.0073216	10612	DP690-14	79.693	64.755			0.81641	0.98462	NaN	1	0	Median	94772000	44997000	49775000	16901	552	15797	33306	80659;80660	80659		2	9606
YQLDKDGVVLFK	2	0	Unmodified	1423.7711	0.77111627	402	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	1	4	0				1													17.004	17.004	3	0.0033335	11164	DP690-4	77.185	56.125			1.2469	1.2933	NaN	1	0	Median	23053000	9898900	13154000	16902	402	15798	33307	80661;80662;80663;80664	80663		4	9606
YQLDPTASISAK	1	0	Unmodified	1292.6612	0.66123147	744	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	15	0.816														1	1	1	15.695	15.695	2	9.8273E-05	9731	DP690-14	154.84	127.54			0.64035	0.73922	13.533	3	0	Median	1261000000	720330000	540700000	16903	744	15799	33308;33309;33310	80665;80666;80667;80668;80669;80670;80671;80672;80673;80674	80666		10	9606
YQLEIPENFTTR	0	1	Unmodified	1509.7464	0.74635808	858	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	10	0										2							18.914	18.914	2	0.0025577	15134	DP690-10	179.42	125.85			NaN	NaN	NaN	0	0	Median	0	0	0	16904	858	15800	33311;33312	80675;80676	80675		2	9606
YQLLQLVEPFGVISNHLILNK	1	0	Unmodified	2437.3733	0.37331671	735	P43243	MATR3	Matrin-3	yes	yes	0	0	0	10	1									1		1						23.618	23.618	3	7.6501E-07	21298	DP690-11	134.83	123.26			0.75052	0.91774	6.7439	2	0	Median	71293000	40309000	30984000	16905	735	15801	33313;33314	80677;80678;80679;80680;80681;80682;80683;80684;80685	80678		9	9606
YQQGDFGYCPR	0	1	Unmodified	1389.5772	0.57718426	1027	P67870	CSNK2B	Casein kinase II subunit beta	yes	yes	0	0	0	15	0															1		14.39	14.39	2	1.0424E-05	7867	DP690-15	193.41	183.52			0.78593	0.86466	NaN	1	0	Median	112000000	61605000	50398000	16906	1027	15802	33315	80686;80687;80688;80689	80689		4	9606
YQSALLPHK	1	0	Unmodified	1055.5764	0.57637963	2081	Q9H061	TMEM126A	Transmembrane protein 126A	yes	yes	0	0	0	16	0																1	12.113	12.113	2	0.015014	4723	DP690-16	84.498	69.117			0.73229	0.84185	NaN	1	0	Median	33713000	19936000	13777000	16907	2081	15803	33316	80690;80691	80690		2	9606
YQSAPSQAPGNTIER	0	1	Unmodified	1617.7747	0.7746981	1588	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	8	4				1								1					12.169	12.169	2	7.957E-16	5088	DP690-12	234.3	196.79			0.7606	0.88909	6.7367	2	0	Median	55635000	29890000	25745000	16908	1588	15804	33317;33318	80692;80693;80694;80695;80696;80697;80698;80699;80700;80701	80695		10	9606
YQTQPVTLGEVEQVQSGK	1	0	Unmodified	1990.0007	0.0007348666	323	O95425	SVIL	Supervillin	yes	yes	0	0	0	10	0										1							17.028	17.028	2	1.2829E-42	12416	DP690-10	307.77	268.19			0.7805	0.96564	NaN	1	0	Median	68138000	33209000	34929000	16909	323	15805	33319	80702;80703;80704;80705;80706;80707	80704		6	9606
YQYGGLNSGRPVTPPR	0	2	Unmodified	1760.8958	0.89581629	964	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	1	14	0														1			13.408	13.408	2	0.0010892	6692	DP690-14	112.64	81.916			0.62425	0.7336	NaN	1	0	Median	18515000	11887000	6627200	16910	964	15806	33320	80708;80709	80709		2	9606
YRCELLYEGPPDDEAAMGIK	1	1	Oxidation (M)	2342.0559	0.055883259	483	P13639	EEF2	Elongation factor 2	yes	yes	0	1	1	7	4			1								1						16.48	16.48	3	0.0031078	10598	DP690-3	66.76	51.553			0.85247	0.99935	26.053	2	0	Median	71802000	32063000	39740000	16911	483	15807	33321;33322	80710;80711;80712;80713	80713	597	4	9606
YRDPTTVTTLR	0	2	Unmodified	1321.699	0.69901396	1015	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	0	1	4.67	0.471				1	2												12.902	12.902	2;3	6.0105E-05	5784	DP690-4	110.93	94.46			1.6807	1.6598	10.83	3	0	Plateau	191590000	68390000	123200000	16912	1015	15808	33323;33324;33325	80714;80715;80716;80717;80718;80719;80720;80721	80716		8	9606
YRDVAECGPQQELDLNSPR	0	2	Unmodified	2246.0386	0.038593711	2000	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	1	4	0				1													15.028	15.028	3	0.00042858	8566	DP690-4	89.831	67.723			0.67959	0.71207	NaN	1	0	Median	18509000	10947000	7563000	16913	2000	15809	33326	80722;80723	80722		2	9606
YRDVSPFDHSR	0	2	Unmodified	1377.6426	0.64256171	521	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	1	13	0													1				11.59	11.59	3	4.8629E-05	4107	DP690-13	137.4	110.07			1.1912	1.3678	NaN	1	0	Median	281170000	131130000	150040000	16914	521	15810	33327	80724;80725;80726;80727;80728	80727		5	9606
YRGQHVTGSPFQFTVGPLGEGGAHK	1	1	Unmodified	2626.3041	0.30406795	250	O75369	FLNB	Filamin-B	yes	yes	0	0	1	10	0										1							15.553	15.553	4	0.079715	10451	DP690-10	28.412	7.1212			0.82138	0.99319	NaN	1	0	Median	139640000	75726000	63917000	16915	250	15811	33328	80729	80729		1	9606
YRHDENILESEPIVYR	0	2	Unmodified	2032.0014	0.0014035686	1850	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	0	1	12	0												2					15.546	15.546	3;4	0.0010483	9781	DP690-12	84.41	64.361			0.56583	0.64156	57.061	2	0	Median	106560000	61905000	44652000	16916	1850	15812	33329;33330	80730;80731;80732;80733;80734	80730		5	9606
YRHPGCYTCADCGLNLK	1	1	Unmodified	2083.9026	0.90263428	1885	Q96JY6	PDLIM2	PDZ and LIM domain protein 2	yes	yes	0	0	1	14	0														2			12.919	12.919	3;4	9.845E-08	6004	DP690-14	153.48	134.41			0.8118	0.98671	6.2201	2	0	Median	136090000	75930000	60157000	16917	1885	15813	33331;33332	80735;80736;80737	80737		3	9606
YRNPVSQCMR	0	2	Unmodified	1309.602	0.60195923	1185	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	1	13	0													1				11.589	11.589	3	0.0009512	4108	DP690-13	99.788	69.176			0.72942	0.83753	NaN	1	0	Median	129990000	73834000	56153000	16918	1185	15814	33333	80738;80739;80740	80738		3	9606
YRPENTPEPVSTSVSHYGAEPTTVSPCPSSSAK	1	1	Unmodified	3518.626	0.62599153	412	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	0	1	12	0												2					14.072	14.072	3;4	7.2569E-36	7682	DP690-12	187.01	154.15			0.35127	0.45277	NaN	1	0	Median	223770000	215860000	7911500	16919	412	15815	33334;33335	80741;80742;80743;80744;80745	80744		5	9606
YRPGTVALR	0	2	Unmodified	1031.5876	0.58761301	1036;1444	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	1	12	4								2								2	11.125	11.125	2;3	0.004757	3693	DP690-16	83.647	63.861			0.90099	0.95192	85.045	3	0	Median	5518200000	2832900000	2685300000	16920	1036;1444	15816	33336;33337;33338;33339	80746;80747;80748;80749;80750;80751;80752	80747		7	9606
YRPLFDYFLK	1	1	Unmodified	1360.718	0.71795849	721	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	10	0										1							19.898	19.898	3	0.0033855	16671	DP690-10	70.412	44.52			0.82494	0.99432	NaN	1	0	Median	20612000	11280000	9331700	16921	721	15817	33340	80753	80753		1	9606
YRPQTLNDLISHQDILSTIQK	1	1	Unmodified	2482.318	0.31798668	711	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	1	14	0														2			18.935	18.935	3;4	1.887E-10	14252	DP690-14	156.08	118.36			0.75038	0.89705	11.694	2	0	Median	162070000	84937000	77130000	16922	711	15818	33341;33342	80754;80755;80756;80757	80757		4	9606
YSAGSVYYYPSYHHQHNPVQVQK	1	0	Unmodified	2751.283	0.28299816	327	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	3	0			1														13.237	13.237	4	0.0096941	6239	DP690-3	52.19	39.876			0.73142	0.77194	NaN	1	0	Median	8606500	5321800	3284700	16923	327	15819	33343	80758;80759	80758		2	9606
YSAHSSHVTNVSFTHNDSHLISTGGK	1	0	Unmodified	2782.3059	0.30591844	2165	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	11	0											1						12.279	12.279	5	0.00016739	5365	DP690-11	73.781	59.84			0.85485	0.95604	NaN	1	0	Median	238820000	126830000	111990000	16924	2165	15820	33344	80760	80760		1	9606
YSAPATLSSR	0	1	Unmodified	1051.5298	0.52982336	1885	Q96JY6	PDLIM2	PDZ and LIM domain protein 2	yes	yes	0	0	0	14	0														1			12.586	12.586	2	0.043854	5547	DP690-14	66.299	24.869			0.83205	0.97023	NaN	1	0	Median	169760000	88108000	81651000	16925	1885	15821	33345	80761;80762	80762		2	9606
YSAQTDITDDSLDR	0	1	Unmodified	1598.706	0.70600941	1048	P78559	MAP1A	Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2	yes	yes	0	0	0	9	0									1								15.051	15.051	2	2.5977E-05	8567	DP690-9	174.42	155.89			0.88815	1.1088	NaN	1	0	Median	14298000	8298900	5999200	16926	1048	15822	33346	80763;80764;80765;80766;80767	80764		5	9606
YSAVLDAVIASAGLLR	0	1	Unmodified	1617.909	0.90900673	1906	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	13	0													1				24.621	24.621	2	5.6465E-06	20954	DP690-13	132.59	132.59			0.8893	1.0528	NaN	1	0	Median	4708900	2490000	2218900	16927	1906	15823	33347	80768;80769;80770;80771	80770		4	9606
YSCFALFVK	1	0	Unmodified	1133.558	0.55795237	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	9.5	0.5									1	1							19.112	19.112	2	0.01041	13756	DP690-9	89.142	47.49			0.86267	1.0701	5.1408	2	0	Median	80777000	42551000	38226000	16928	1046	15824	33348;33349	80772;80773;80774;80775;80776;80777;80778	80778		7	9606
YSCLVAGPHQR	0	1	Unmodified	1286.619	0.6189895	1386	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	yes	yes	0	0	0	13.5	0.5													2	2			10.932	10.932	2;3	0.00010937	3357	DP690-13	147.19	124.11			0.8263	1.0086	4.9274	4	0	Median	146690000	80551000	66135000	16929	1386	15825	33350;33351;33352;33353	80779;80780;80781;80782;80783;80784;80785;80786;80787;80788;80789;80790;80791;80792	80781		14	9606
YSDADIEPFLK	1	0	Unmodified	1296.6238	0.62378333	1240	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	10	0										1							18.692	18.692	2	0.0017946	14935	DP690-10	99.815	71.606			0.84483	1.0444	NaN	1	0	Median	73184000	40101000	33083000	16930	1240	15826	33354	80793;80794	80793		2	9606
YSDIDIILLK	1	0	Unmodified	1191.6751	0.67509062	1799	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	3	0			1														20.551	20.551	2	0.0021447	15817	DP690-3	101.25	78.472			1.6275	1.7227	NaN	1	0	Median	9849400	3578100	6271300	16931	1799	15827	33355	80795;80796;80797;80798	80795		4	9606
YSDLTTLVAFPSSSVYPTKDEENNPLETEYGLSVYK	2	0	Unmodified	4055.9416	0.94155482	581	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	9	0									1								22.031	22.031	3	0.075577	17284	DP690-9	29.799	19.245			NaN	NaN	NaN	0	0	Median	2892300	1748600	1143700	16932	581	15828	33356	80799	80799		1	9606
YSDMIVAAIQAEK	1	0	Oxidation (M)	1453.7123	0.71228076	403	P07305	H1F0	Histone H1.0;Histone H1.0, N-terminally processed	yes	yes	0	1	0	15	0															1		17.053	17.053	2	7.9398E-05	11409	DP690-15	147.62	121.58			0.90708	1.0241	NaN	1	0	Median	88442000	45455000	42987000	16933	403	15829	33357	80800;80801;80802;80803	80801	435	4	9606
YSEAAELR	0	1	Unmodified	937.45051	0.45051041	2438	Q9Y2D5	AKAP2	A-kinase anchor protein 2	yes	yes	0	0	0	11	0											1						11.967	11.967	2	0.050289	4993	DP690-11	116.88	47.5			1.1977	1.4045	NaN	1	0	Median	149560000	75626000	73935000	16934	2438	15830	33358	80804	80804		0	9606
YSEEANNLIEECEQAER	0	1	Unmodified	2082.88	0.88002738	1870	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	4	0				1													16.78	16.78	2	6.2574E-33	10830	DP690-4	304.93	272.87			1.1011	1.2813	NaN	1	0	Median	9026200	3236300	5789800	16935	1870	15831	33359	80805;80806;80807;80808	80805		4	9606
YSEKEDKYEEEIK	3	0	Unmodified	1688.7781	0.77811172	1028	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	2	12.2	3.71							3							1	5		11.326	11.326	3;4	2.9183E-05	3761	DP690-14	137.81	98.412			0.64128	0.68923	14.958	3	0	Plateau	276650000	184420000	92225000	16936	1028	15832	33360;33361;33362;33363;33364;33365;33366;33367;33368	80809;80810;80811;80812;80813;80814;80815;80816;80817;80818;80819;80820;80821;80822;80823	80810		15	9606
YSELTTVQQQLIR	0	1	Unmodified	1577.8413	0.8413211	182	O43592	XPOT	Exportin-T	yes	yes	0	0	0	3	0			1														17.835	17.835	2	0.00012324	12426	DP690-3	169.58	138.1			1.173	1.3191	NaN	1	0	Median	32667000	14841000	17826000	16937	182	15833	33369	80824;80825	80824		2	9606
YSEQMTYGISSEK	1	0	Oxidation (M)	1537.6606	0.66063912	137	O15111	CHUK	Inhibitor of nuclear factor kappa-B kinase subunit alpha	yes	yes	0	1	0	3	0			4														13.215	13.215	2	0.012095	6313	DP690-3	103.46	64.711			NaN	NaN	NaN	0	0	Median	0	0	0	16938	137	15834	33370;33371;33372;33373	80826;80827;80828;80829	80829	156	4	9606
YSESAGGFYYVESGK	1	0	Unmodified	1642.7151	0.71511753	1156	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	10	0										1							16.413	16.413	2	0.00036062	11611	DP690-10	109.84	77.811			0.99692	1.2325	NaN	1	0	Median	72736000	38155000	34581000	16939	1156	15835	33374	80830;80831	80830		2	9606
YSESLLGVPIAYDNIK	1	0	Unmodified	1780.9247	0.92471638	1386	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	yes	yes	0	0	0	13	0													1				20.683	20.683	2	0.024006	16273	DP690-13	62.088	47.212			0.86487	1.0053	NaN	1	0	Median	23379000	11814000	11565000	16940	1386	15836	33375	80832	80832		1	9606
YSEVFEAINITNNEK	1	0	Unmodified	1769.8472	0.84719434	1035	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	14	0														1			18.802	18.802	2	1.2154E-05	14059	DP690-14	171.26	150.42			1.0459	1.2733	NaN	1	0	Median	38442000	18608000	19834000	16941	1035	15837	33376	80833;80834;80835	80833		3	9606
YSFIQALVR	0	1	Unmodified	1095.6077	0.60767975	1783	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	9.5	0.5									1	1							20.095	20.095	2	0.00033379	16912	DP690-10	189.62	142.54			0.69806	0.8673	21.088	2	0	Median	105930000	58492000	47441000	16942	1783	15838	33377;33378	80836;80837;80838;80839;80840;80841;80842;80843;80844	80838		9	9606
YSFLQFDPAPR	0	1	Unmodified	1339.6561	0.65608651	987	P67775;P62714	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	yes	no	0	0	0	10	4						1								1			19.792	19.792	2	0.00011212	13862	DP690-6	140.83	112.75			0.97365	1.1396	17.599	2	0	Median	85924000	38588000	47336000	16943	987	15839	33379;33380	80845;80846;80847;80848;80849;80850;80851	80851		7	9606
YSGAQDSGIGSDSVK	1	0	Unmodified	1469.6634	0.66341631	1557	Q7Z7G8	VPS13B	Vacuolar protein sorting-associated protein 13B	yes	yes	0	0	0	9	0									2								12.276	12.276	2	0.004227	4908	DP690-9	119.39	70.963			NaN	NaN	NaN	0	0	Median	1202600	0	1202600	16944	1557	15840	33381;33382	80852;80853;80854	80852		3	9606
YSGAYGASVSDEELK	1	0	Unmodified	1574.71	0.71003215	2250	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	15	0															1		14.764	14.764	2	1.6178E-15	8438	DP690-15	241.39	221.76			0.81492	0.93053	NaN	1	0	Median	67130000	36980000	30150000	16945	2250	15841	33383	80855;80856;80857;80858	80858		4	9606
YSGAYGASVSDEELKR	1	1	Unmodified	1730.8111	0.81114318	2250	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	1	15	0															2		13.465	13.465	2;3	1.6989E-05	6777	DP690-15	127.37	97.84			0.7545	0.87016	44.974	2	0	Median	81511000	39131000	42380000	16946	2250	15842	33384;33385	80859;80860;80861;80862;80863	80861		5	9606
YSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDK	2	0	Oxidation (M)	4235.9609	0.96086725	1989	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	1	1	5	0					1												21.365	21.365	4	9.1836E-07	16068	DP690-5	81.388	67.335			NaN	NaN	NaN	0	0	Median	10248000	10248000	0	16947	1989	15843	33386	80864	80864	2530	1	9606
YSGGNYRDNYDN	0	1	Unmodified	1436.5593	0.55928559	1067	P98179	RBM3	RNA-binding protein 3	yes	yes	0	0	1	16	0																1	11.578	11.578	2	0.00020284	4174	DP690-16	180.66	172.62			0.9267	1.0782	NaN	1	0	Median	10457000	5163800	5293100	16948	1067	15844	33387	80865;80866;80867;80868	80867		4	9606
YSGGPQIVK	1	0	Unmodified	947.50763	0.50763136	1291	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	4	0				1													11.896	11.896	2	0.025511	4492	DP690-4	75.109	57.869			0.83423	0.91255	NaN	1	0	Median	12262000	6281800	5979900	16949	1291	15845	33388	80869	80869		1	9606
YSGLCPHVVVLVATVR	0	1	Unmodified	1768.9658	0.96581011	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	7	4			1								1						17.862	17.862	3	1.1586E-06	12469	DP690-3	138.01	138.01			0.59974	0.67447	NaN	1	0	Median	155360000	144400000	10964000	16950	470	15846	33389;33390	80870;80871;80872;80873;80874;80875	80873		6	9606
YSGSYNDYLR	0	1	Unmodified	1236.5411	0.54111633	1910	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	12	0												1					15.25	15.25	2	0.0095022	9353	DP690-12	117.81	84.971			NaN	NaN	NaN	0	0	Median	0	0	0	16951	1910	15847	33391	80876	80876		1	9606
YSGTLNLDR	0	1	Unmodified	1037.5142	0.5141733	789	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1															14.016	14.016	2	0.0022758	6438	DP690-2	111.95	80.658			0.87201	0.90285	NaN	1	0	Median	214920000	110750000	104170000	16952	789	15848	33392	80877;80878	80878		2	9606
YSHLQPGDHLTDITLK	1	0	Unmodified	1836.937	0.9370124	1316	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	4	0				1													14.848	14.848	3	0.020196	8383	DP690-4	54.811	26.263			1.0517	1.133	NaN	1	0	Median	34659000	16441000	18218000	16953	1316	15849	33393	80879;80880	80879		2	9606
YSHVQEVQER	0	1	Unmodified	1273.6051	0.60511357	1803;93	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	no	no	0	0	0	2	0		1															10.347	10.347	3	0.029274	2350	DP690-2	115.57	92.853			1.1246	1.1736	NaN	1	0	Median	17239000	8390100	8849200	16954	1803;93	15850	33394	80881	80881		0	9606
YSIWCSTEHGNKR	1	1	Unmodified	1636.7416	0.74162383	2053	Q9BYJ9;Q7Z739	YTHDF1;YTHDF3	YTH domain-containing family protein 1;YTH domain-containing family protein 3	yes	no	0	0	1	12	0												1					11.901	11.901	3	2.6015E-05	4659	DP690-12	124.12	102.07			0.89915	1.0464	NaN	1	0	Median	109460000	58265000	51195000	16955	2053	15851	33395	80882;80883;80884;80885	80882		4	9606
YSLDPENPTK	1	0	Unmodified	1162.5506	0.55061839	529	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	15	0															1		14.495	14.495	2	4.4165E-05	8009	DP690-15	185.58	151.2			0.77084	0.79774	NaN	1	0	Median	744170000	422590000	321580000	16956	529	15852	33396	80886;80887;80888;80889;80890	80889		5	9606
YSLQNTEESLR	0	1	Unmodified	1338.6416	0.64155866	2211	Q9NSP4	CENPM	Centromere protein M	yes	yes	0	0	0	12	4								1								1	15.254	15.254	2	9.8092E-05	8403	DP690-8	143.04	109.78			0.96376	1.0984	12.229	2	0	Median	44600000	23518000	21083000	16957	2211	15853	33397;33398	80891;80892;80893;80894;80895;80896	80896		6	9606
YSLQSANASSLSSGQLK	1	0	Unmodified	1739.869	0.86899241	2104	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	10	0										1							15.758	15.758	2	0.0012032	10708	DP690-10	90.861	57.319			1.0161	1.2516	NaN	1	0	Median	51850000	26975000	24875000	16958	2104	15854	33399	80897	80897		1	9606
YSNDLYELQASR	0	1	Unmodified	1457.6787	0.67867245	837	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	11	0											1						16.146	16.146	2	2.7894E-05	11051	DP690-11	187.97	158.5			0.84839	1.0131	NaN	1	0	Median	118240000	64955000	53281000	16959	837	15855	33400	80898;80899	80898		2	9606
YSNDPVVASLAQDIFK	1	0	Unmodified	1765.8887	0.88866522	1908	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	3	0			1														22.645	22.645	2	1.5773E-06	18192	DP690-3	174.46	161.03			0.71936	0.75721	NaN	1	0	Median	7627500	4385500	3242000	16960	1908	15856	33401	80900;80901;80902;80903;80904	80900		5	9606
YSNEDTLSVALPYFWEHFDKDGWSLWYSEYR	1	1	Unmodified	3902.7529	0.75290661	598	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	13	0													1				24.452	24.452	4	2.0367E-06	20720	DP690-13	90.78	84.117			0.7417	0.87095	NaN	1	0	Median	4498800	2483200	2015600	16961	598	15857	33402	80905;80906;80907;80908;80909	80906		5	9606
YSNSEVVTGSGR	0	1	Unmodified	1254.584	0.58404378	1531	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	8.25	3.11			1						1	1	1						11.149	11.149	2	1.2109E-05	3624	DP690-3	192.64	150.53			0.9267	1.1469	9.4992	4	0	Median	176140000	87205000	88932000	16962	1531	15858	33403;33404;33405;33406	80910;80911;80912;80913;80914;80915;80916;80917;80918;80919;80920;80921;80922;80923;80924;80925;80926	80922		17	9606
YSNVSSIEDSFAMEK	1	0	Oxidation (M)	1721.7454	0.74543138	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	1	0	11	0											1						17.386	17.386	2	0.0018238	12878	DP690-11	96.059	87.33			0.9615	1.1626	NaN	1	0	Median	86768000	45287000	41481000	16963	144	15859	33407	80927;80928	80928	162	2	9606
YSNVSSIEDSFAMEK	1	0	Unmodified	1705.7505	0.75051676	144	O15231	ZNF185	Zinc finger protein 185	yes	yes	0	0	0	11	0											1						18.261	18.261	2	8.1318E-06	14073	DP690-11	174.21	165.8			0.74515	0.87155	NaN	1	0	Median	133540000	76966000	56570000	16964	144	15859	33408	80929;80930;80931;80932;80933	80929		5	9606
YSPGYNTEVGDKWIWLK	2	0	Unmodified	2055.0102	0.010177341	314	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	1	14	0														1			18.752	18.752	3	0.00031414	14011	DP690-14	96.247	80.305			0.8182	0.91615	NaN	1	0	Median	67271000	38950000	28320000	16965	314	15860	33409	80934;80935	80935		2	9606
YSPHLLANSK	1	0	Unmodified	1128.5928	0.59275797	357	P00813	ADA	Adenosine deaminase	yes	yes	0	0	0	6	0						1											11.518	11.518	3	0.012435	4065	DP690-6	83.869	42.42			NaN	NaN	NaN	0	0	Median	0	0	0	16966	357	15861	33410	80936	80936		1	9606
YSPPPQSPELYVAASK	1	0	Unmodified	1732.8672	0.8672015	1450	Q5VZE5	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	yes	yes	0	0	0	11	0											1						16.029	16.029	2	0.026468	10948	DP690-11	60.401	60.401			1.0977	1.3396	NaN	1	0	Median	26814000	14987000	11827000	16967	1450	15862	33411	80937	80937		1	9606
YSPTSPTYSPTSPK	1	0	Unmodified	1511.7144	0.71438925	579	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	no	0	0	0	6	4		1								1							13.087	13.087	2	0.0018062	6700	DP690-10	92.112	61.284			0.82084	0.90289	18.075	2	0	Median	44586000	24288000	20298000	16968	579	15863	33412;33413	80938;80939;80940;80941;80942	80938		5	9606
YSQKEDKYEEEIK	3	0	Unmodified	1687.7941	0.79409613	398	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	2	13.1	3.06							1		1					2	3	1	10.777	10.777	2;3;4	3.9158E-09	3250	DP690-15	247.13	211.95			0.777	0.82652	24.716	8	0	Median	2293700000	1260400000	1033299999.9999999	16969	398	15864	33414;33415;33416;33417;33418;33419;33420;33421	80943;80944;80945;80946;80947;80948;80949;80950;80951;80952;80953;80954;80955;80956;80957;80958;80959;80960;80961;80962;80963;80964;80965;80966;80967	80959		25	9606
YSQLVVETIRR	0	2	Unmodified	1362.7619	0.76194857	1771	Q92522	H1FX	Histone H1x	yes	yes	0	0	1	15	0															2		14.235	14.235	2;3	2.6864E-05	7702	DP690-15	132.91	132.91			0.74375	0.80682	5.2872	2	0	Median	77459000	44312000	33146000	16970	1771	15865	33422;33423	80968;80969;80970;80971;80972	80969		5	9606
YSQSDLEQTK	1	0	Unmodified	1197.5513	0.55134667	1285	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	9.5	0.5									1	1							12.042	12.042	2	5.5369E-05	5230	DP690-10	211.48	180.79			0.78633	0.97118	NaN	1	0	Median	140130000	77658000	62473000	16971	1285	15866	33424;33425	80973;80974;80975;80976	80975		4	9606
YSQTGNYELAVALSR	0	1	Unmodified	1670.8264	0.82639932	699	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	14	0														1			18.022	18.022	2	0.0011531	12983	DP690-14	120.57	100.29			0.64395	0.77907	NaN	1	0	Median	49372000	31237000	18136000	16972	699	15867	33426	80977;80978	80977		2	9606
YSQVLANGLDNK	1	0	Unmodified	1320.6674	0.66737948	973	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	12	4								1								1	14.389	14.389	2	3.1375E-10	7716	DP690-16	219.5	188.81			0.96403	1.0229	5.2894	2	0	Median	551830000	281040000	270790000	16973	973	15868	33427;33428	80979;80980;80981;80982;80983;80984;80985;80986	80982		8	9606
YSQYQQAIYK	1	0	Unmodified	1290.6245	0.62445203	111	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	12	0												1					13.563	13.563	2	0.0015527	6961	DP690-12	105.14	73.849			1.4654	1.7613	NaN	1	0	Median	22934000	11695000	11240000	16974	111	15869	33429	80987;80988;80989;80990;80991	80989		5	9606
YSSDVQEMILSSATADRIPIAVSGVR	0	2	Oxidation (M)	2780.4015	0.40145831	1782	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	1	1	10	0										1							19.795	19.795	3	0.00016466	16468	DP690-10	88.071	71.747			0.78662	0.9369	NaN	1	0	Median	80375000	46037000	34338000	16975	1782	15870	33430	80992;80993	80992	2348	2	9606
YSSIVMQDTKDEHR	1	1	Oxidation (M)	1723.7835	0.78354822	1434	Q5T2E6	C10orf76	UPF0668 protein C10orf76	yes	yes	0	1	1	4	0				1													10.447	10.447	3	0.021016	2763	DP690-4	86.467	43.998			0.86178	0.98288	NaN	1	0	Median	3300600	1747900	1552700	16976	1434	15871	33431	80994	80994	2149	0	9606
YSSQDADEQDWEFQKR	1	1	Unmodified	2030.8606	0.86061257	2065	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	1	10	0										1							14.501	14.501	3	5.9448E-05	8801	DP690-10	116.58	111.26			0.83633	1.037	NaN	1	0	Median	96197000	45173000	51024000	16977	2065	15872	33432	80995;80996;80997;80998	80996		4	9606
YSTPTYTGGQSESHVQSASEDTVTER	0	1	Unmodified	2816.2373	0.23728934	1537	Q7Z2T5	TRMT1L	TRMT1-like protein	yes	yes	0	0	0	11	0											1						13.677	13.677	3	0.0010786	7481	DP690-11	87.72	71.624			NaN	NaN	NaN	0	0	Median	9675800	9675800	0	16978	1537	15873	33433	80999;81000	80999		2	9606
YSTSGSSGLTTGK	1	0	Unmodified	1244.5885	0.58846046	1375	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	11	0											2						11.081	11.081	2	0.00016356	3667	DP690-11	152.04	118.24			NaN	NaN	NaN	0	0	Median	92690000	0	92690000	16979	1375	15874	33434;33435	81001;81002;81003;81004	81003		4	9606
YSVDIPLDK	1	0	Unmodified	1048.5441	0.54407645	950	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	16	0																1	16.73	16.73	2	0.0007509	10666	DP690-16	136.27	40.078			0.90901	0.95984	NaN	1	0	Median	249250000	130270000	118970000	16980	950	15875	33436	81005;81006;81007;81008	81008		4	9606
YSVQLLTPANLLAK	1	0	Unmodified	1529.8817	0.88172935	2431	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	13	0													4				20.855	20.855	2	4.5266E-05	16453	DP690-13	203.03	203.03			1.0104	1.1676	36.038	2	0	Median	125360000	75874000	49489000	16981	2431	15876	33437;33438;33439;33440	81009;81010;81011;81012;81013;81014;81015	81012		7	9606
YSVWIGGSILASLSTFQQMWISK	1	0	Unmodified	2601.3301	0.33013127	926;1023;1029;1408	P60709;P63261;P68032;P63267;P62736;Q562R1	ACTB;ACTG1;ACTC1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	0	14.7	0.471														1	2		28.31	28.31	2	7.9165E-15	24876	DP690-14	162.29	138.81			0.84226	0.99217	NaN	1	0	Median	3754800	2267600	1487200	16982	926;1023;1029;1408	15877	33441;33442;33443	81016;81017;81018;81019;81020;81021;81022;81023;81024;81025;81026;81027	81018		12	9606
YTALVTLTTQHVK	1	0	Unmodified	1473.8191	0.81912909	2411	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	9	0									2								14.981	14.981	2;3	0.017144	8521	DP690-9	58.32	58.32			0.84274	1.077	NaN	1	0	Median	11307000	5120600	6186700	16983	2411	15878	33444;33445	81028;81029;81030	81029		3	9606
YTAQVDAEEKEDVK	2	0	Unmodified	1623.7628	0.76279601	282	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	1	15.5	0.5															2	2	11.398	11.398	2;3	8.2797E-06	3943	DP690-16	131.79	114.66			0.75513	0.85612	16.888	4	0	Median	133940000	73752000	60186000	16984	282	15879	33446;33447;33448;33449	81031;81032;81033;81034;81035;81036;81037;81038;81039;81040;81041;81042;81043;81044;81045;81046	81042		16	9606
YTASGCEVIAVNTR	0	1	Unmodified	1539.7351	0.73514147	205	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	11	0											1						14.645	14.645	2	0.0051837	8809	DP690-11	115.29	76.139			NaN	NaN	NaN	0	0	Median	11249000	11249000	0	16985	205	15880	33450	81047;81048	81047		2	9606
YTASVTVGSK	1	0	Unmodified	1011.5237	0.52367535	2161	Q9HBH0	RHOF	Rho-related GTP-binding protein RhoF	yes	yes	0	0	0	15	0															1		11.477	11.477	2	0.00063119	4105	DP690-15	114.89	76.076			0.8018	0.94591	NaN	1	0	Median	20160000	10720000	9440000	16986	2161	15881	33451	81049;81050	81049		2	9606
YTAVQQGNMAVTVTYGGDPVPK	1	0	Oxidation (M)	2311.1154	0.11544705	1270	Q14315	FLNC	Filamin-C	yes	yes	0	1	0	4	3.46		3								1							15.974	15.974	2	4.1765E-15	10954	DP690-10	175.26	155.15			0.75454	0.83864	36.135	2	0	Median	77505000	45633000	31872000	16987	1270	15882	33452;33453;33454;33455	81051;81052;81053;81054;81055;81056;81057;81058;81059;81060	81052	1951	10	9606
YTAVQQGNMAVTVTYGGDPVPK	1	0	Unmodified	2295.1205	0.12053243	1270	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	10	0										2							17.232	17.232	2	5.241E-15	12781	DP690-10	187.75	187.75			0.95437	1.1729	NaN	1	0	Median	36573000	18622000	17951000	16988	1270	15882	33456;33457	81061;81062;81063	81061		3	9606
YTCGEAPDYDR	0	1	Unmodified	1345.5245	0.52447999	546	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	7	0							1										12.183	12.183	2	0.03398	4920	DP690-7	67.704	56.068			0.67855	0.77172	NaN	1	0	Median	23362000	14570000	8791700	16989	546	15883	33458	81064	81064		1	9606
YTCHVQHEGLPKPLTLR	1	1	Unmodified	2048.0626	0.062564037	372	P04439;P01889	HLA-A;HLA-B	HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain	yes	no	0	0	1	14	0														2			13.058	13.058	4;5	0.022814	6103	DP690-14	51.495	37.454			0.74644	0.84909	12.222	2	0	Median	332610000	192510000	140100000	16990	372	15884	33459;33460	81065;81066	81065		1	9606
YTDLNSNDVTGLR	0	1	Unmodified	1466.7001	0.70013617	1308	Q15007	WTAP	Pre-mRNA-splicing regulator WTAP	yes	yes	0	0	0	13	0													1				15.509	15.509	2	0.0067354	9511	DP690-13	107.03	71.758			NaN	NaN	NaN	0	0	Median	13433000	0	13433000	16991	1308	15885	33461	81067	81067		1	9606
YTEHSTVGLAQQWDQLDQLGMR	0	1	Oxidation (M)	2591.2074	0.20744995	1236	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	1	0	10	0										1							18.692	18.692	3	0.066017	14959	DP690-10	54.728	40.621			NaN	NaN	NaN	0	0	Median	14809000	0	14809000	16992	1236	15886	33462	81068	81068		1	9606
YTFAPSVSLNK	1	0	Unmodified	1225.6343	0.63428844	2194	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	13	0													1				16.631	16.631	2	0.00054432	11073	DP690-13	112.11	73.831			0.71549	0.80871	NaN	1	0	Median	137830000	76070000	61763000	16993	2194	15887	33463	81069;81070;81071;81072	81071		4	9606
YTGEDFDEDLR	0	1	Unmodified	1358.5626	0.56263964	1264	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	5.5	3.5		1							1								16.183	16.183	2	0.0019988	10130	DP690-9	98.048	75.709			0.85439	1.0672	NaN	1	0	Median	14550000	6971800	7577900	16994	1264	15888	33464;33465	81073;81074;81075	81075		3	9606
YTGEDLTCTVK	1	0	Unmodified	1285.586	0.58601761	1399	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	10.5	0.5										1	1						14.033	14.033	2	0.0021961	8022	DP690-11	96.342	86.11			0.84065	1.0264	19.973	2	0	Median	214180000	123500000	90679000	16995	1399	15889	33466;33467	81076;81077;81078;81079	81078		4	9606
YTGYGNAAGLLAAR	0	1	Unmodified	1396.7099	0.709913	2184	Q9NPQ8;Q9NVN3	RIC8A;RIC8B	Synembryn-A;Synembryn-B	yes	no	0	0	0	4	0				1													16.977	16.977	2	0.00014939	11148	DP690-4	120.09	98.521			1.4289	1.6591	NaN	1	0	Median	6409900	2725100	3684800	16996	2184	15890	33468	81080	81080		1	9606
YTHAANTVVYSSNK	1	0	Unmodified	1553.7474	0.74742071	1508	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	14	0														2			10.473	10.473	3	0.0020919	2786	DP690-14	78.191	78.191			0.83646	1.0057	NaN	1	0	Median	111390000	43664000	67724000	16997	1508	15891	33469;33470	81081;81082	81081		2	9606
YTIHSQLEHLQSK	1	0	Unmodified	1582.8104	0.81035532	2029	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	0	0	12	4								1								1	12.639	12.639	3	1.1135E-05	5434	DP690-16	180.61	162.28			0.80295	0.89002	3.327	2	0	Median	180080000	103930000	76145000	16998	2029	15892	33471;33472	81083;81084;81085;81086;81087	81084		5	9606
YTIMVLFANQEIPASPFHIK	1	0	Oxidation (M)	2334.2082	0.20822522	1270	Q14315	FLNC	Filamin-C	yes	yes	0	1	0	2	0		1															21.036	21.036	3	0.030432	14661	DP690-2	48.51	33.005			0.83889	0.83262	NaN	1	0	Median	3244300	1703700	1540600	16999	1270	15893	33473	81088	81088	1952	1	9606
YTISQEAYDQR	0	1	Unmodified	1372.6259	0.62590859	1933	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	7	0							1										13.886	13.886	2	2.7155E-05	6975	DP690-7	187.22	168.24			0.88763	0.97875	NaN	1	0	Median	53938000	28306000	25632000	17000	1933	15894	33474	81089;81090	81090		2	9606
YTLFSASSEGQNHSR	0	1	Unmodified	1682.7649	0.76486169	1724	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	10	0										2							13.692	13.692	2;3	0.00069385	7630	DP690-10	89.624	74.236			1.1218	1.3871	NaN	1	0	Median	114610000	60201000	54410000	17001	1724	15895	33475;33476	81091;81092	81091		2	9606
YTLNNWLATVTLGQAGMHATYYHK	1	0	Unmodified	2752.3432	0.34315557	348	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	14	0														1			20.463	20.463	4	0.01332	16229	DP690-14	47.472	47.472			1.5351	1.8365	NaN	1	0	Median	20575000	9069200	11506000	17002	348	15896	33477	81093	81093		1	9606
YTLNVLEDLGDGQK	1	0	Unmodified	1563.7781	0.77805214	484	P13797	PLS3	Plastin-3	yes	yes	0	0	0	4	0				1													20.234	20.234	2	8.0451E-05	14963	DP690-4	151.13	130.84			0.6768	0.73197	NaN	1	0	Median	8213300	4959000	3254300	17003	484	15897	33478	81094;81095;81096;81097	81094		4	9606
YTNNLQGDEQR	0	1	Unmodified	1336.6008	0.60075648	1212	Q13472	TOP3A	DNA topoisomerase 3-alpha	yes	yes	0	0	0	11	0											1						10.979	10.979	2	0.00019093	3550	DP690-11	145.46	113.24			0.65408	0.79354	NaN	1	0	Median	20272000	11973000	8298300	17004	1212	15898	33479	81098;81099	81098		2	9606
YTPSGQAGAAASESLFVSNHAY	0	0	Unmodified	2227.0182	0.018175845	363	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	14	0														1			17.995	17.995	2	0.026801	12991	DP690-14	102.72	60.687			NaN	NaN	NaN	0	0	Median	0	0	0	17005	363	15899	33480	81100;81101	81101		2	9606
YTPSQQGVAFNSGAK	1	0	Unmodified	1553.7474	0.74742071	1226	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	8	4				1								1					13.297	13.297	2	2.3839E-05	6635	DP690-12	147.26	121.21			0.84338	0.98829	NaN	1	0	Median	93750000	50642000	43108000	17006	1226	15900	33481;33482	81102;81103;81104;81105;81106	81105		5	9606
YTPTQQGNMQVLVTYGGDPIPK	1	0	Oxidation (M)	2422.1839	0.18386096	250	O75369	FLNB	Filamin-B	yes	yes	0	1	0	10	0										1							17.357	17.357	2	0.00034625	12865	DP690-10	115.66	92.806			0.48252	0.59672	NaN	1	0	Median	61821000	41140000	20682000	17007	250	15901	33483	81107;81108;81109;81110	81107	256	4	9606
YTPTQQGNMQVLVTYGGDPIPK	1	0	Unmodified	2406.1889	0.18894634	250	O75369	FLNB	Filamin-B	yes	yes	0	0	0	10	0										1							18.959	18.959	2	0.013046	15223	DP690-10	93.181	48.066			NaN	NaN	NaN	0	0	Median	0	0	0	17008	250	15901	33484	81111	81111		1	9606
YTPVQQGPVGVNVTYGGDPIPK	1	0	Unmodified	2285.1692	0.16919718	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	9.88	3.22		1							1	2	1	2	1				17.741	17.741	2;3	2.8883E-20	11992	DP690-9	195.23	168.23			0.57707	0.67085	13.059	4	0	Median	1559599999.9999998	917020000	642590000	17009	549	15902	33485;33486;33487;33488;33489;33490;33491;33492	81112;81113;81114;81115;81116;81117;81118;81119;81120;81121;81122;81123;81124;81125;81126;81127;81128;81129;81130	81128		19	9606
YTQLQYIGEGAYGMVSSAYDHVR	0	1	Oxidation (M)	2623.2013	0.20130194	600	P27361	MAPK3	Mitogen-activated protein kinase 3	yes	yes	0	1	0	6	0						1											18.886	18.886	3	0.00015653	12748	DP690-6	111.35	111.35			0.77108	0.88556	NaN	1	0	Median	10414000	5345000	5068800	17010	600	15903	33493	81131;81132	81132	804	2	9606
YTQQGFGNLPICMAK	1	0	Unmodified	1726.8171	0.81709696	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	11	0											1						18.54	18.54	2	0.00024713	14458	DP690-11	115.23	115.23			NaN	NaN	NaN	0	0	Median	21370000	9971800	11398000	17011	1504	15904	33494	81133;81134;81135;81136	81134		4	9606
YTTDEFDQR	0	1	Unmodified	1173.4938	0.49383179	550	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	10	0										1							13.484	13.484	2	0.080799	7358	DP690-10	58.23	40.41			0.76766	0.96135	NaN	1	0	Median	54662000	31408000	23254000	17012	550	15905	33495	81137	81137		1	9606
YTTPEDATPEPGEDPR	0	1	Unmodified	1773.7693	0.76933795	1422	Q5JWF2	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas	yes	yes	0	0	0	13.5	0.5													1	1			13.468	13.468	2	0.00034584	6621	DP690-13	109.72	91.386			0.52895	0.64641	11.302	2	0	Median	48955000	30508000	18447000	17013	1422	15906	33496;33497	81138;81139;81140;81141;81142;81143;81144;81145;81146;81147	81138		10	9606
YTVAPTSLVVSPGQQTLLGLK	1	0	Unmodified	2171.2202	0.22017012	1926	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	0	0	12	0												1					20.71	20.71	2	5.599699999999999E-19	16764	DP690-12	185.32	176.73			0.80595	0.97827	NaN	1	0	Median	10349000	4836000	5512900	17014	1926	15907	33498	81148;81149;81150;81151	81148		4	9606
YTVNFLEAK	1	0	Unmodified	1083.5601	0.56006086	1585	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	4	0				1													17.296	17.296	2	0.051427	11500	DP690-4	93.162	61.228			NaN	NaN	NaN	0	0	Median	0	0	0	17015	1585	15908	33499	81152	81152		1	9606
YTVQDESHSEWVSCVR	0	1	Unmodified	1980.8636	0.86358946	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	14	0														2			15.028	15.028	2;3	3.2603E-22	8867	DP690-14	234.04	197.4			0.88922	1.0237	6.6425	2	0	Median	616470000	327840000	288630000	17016	1022	15909	33500;33501	81153;81154;81155;81156;81157;81158;81159;81160;81161;81162;81163	81160		11	9606
YTYEHDPITK	1	0	Unmodified	1265.5928	0.59281755	724	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	3	0			2														11.921	11.921	2;3	3.5621E-05	4619	DP690-3	182.39	121.48			0.85116	0.90254	NaN	1	0	Median	48222000	17063000	31158000	17017	724	15910	33502;33503	81164;81165;81166;81167;81168;81169	81168		6	9606
YVAEIEKEKEENEK	3	0	Unmodified	1736.8469	0.84685999	115	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	2	11	4							2								2		10.581	10.581	3;4	1.8486E-05	3024	DP690-15	135.02	101.75			1.0245	1.121	20.64	4	0	Median	120480000	63492000	56992000	17018	115	15911	33504;33505;33506;33507	81170;81171;81172;81173;81174;81175;81176;81177;81178;81179	81172		10	9606
YVANLFPYK	1	0	Unmodified	1113.5859	0.58588168	1320	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	6	0						1											17.734	17.734	2	0.0076755	11336	DP690-6	91.9	0			0.83393	0.94359	NaN	1	0	Median	21063000	13462000	7601300	17019	1320	15912	33508	81180;81181;81182;81183	81181		4	9606
YVASYLLAALGGNSSPSAK	1	0	Unmodified	1867.968	0.96797818	384	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	12	4								1								1	21.233	21.233	2	3.1345999999999997E-43	16034	DP690-16	312.92	291.16			0.92653	1.0694	3.3487	2	0	Median	36826000	19692000	17134000	17020	384	15913	33509;33510	81184;81185;81186;81187;81188;81189;81190;81191;81192;81193;81194	81189		11	9606
YVAVPACEHVFIWDLR	0	1	Unmodified	1973.9822	0.98218845	2410	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	11	0											1						19.987	19.987	3	0.040747	16589	DP690-11	63.682	35.699			NaN	NaN	NaN	0	0	Median	5504400	5504400	0	17021	2410	15914	33511	81195	81195		1	9606
YVDIAIPCNNK	1	0	Unmodified	1305.6387	0.63872189	428	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	0	10.2	4.26						2								1	1		15.686	15.686	2	7.9109E-05	9697	DP690-15	128.6	84.951			0.43961	0.49171	79.546	2	0	Median	1296700000	713160000	583490000	17022	428	15915	33512;33513;33514;33515	81196;81197;81198;81199;81200;81201;81202;81203	81198		8	9606
YVDSEGHLYTVPIR	0	1	Unmodified	1647.8257	0.82567103	1103	Q03135	CAV1	Caveolin-1	yes	yes	0	0	0	9	0									1								15.27	15.27	3	0.00038727	8824	DP690-9	98.942	81.517			0.66062	0.8057	NaN	1	0	Median	27314000	16004000	11310000	17023	1103	15916	33516	81204;81205;81206;81207;81208	81207		5	9606
YVDTPFGKPSDALILGK	2	0	Unmodified	1819.972	0.97200092	1181	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	1	7	0							1										18.272	18.272	3	0.00027152	12465	DP690-7	99.238	82.251			0.46717	0.49948	NaN	1	0	Median	54388000	35661000	18727000	17024	1181	15917	33517	81209;81210;81211	81209		3	9606
YVEEQPGHLQMGFASIR	0	1	Oxidation (M)	1976.9414	0.94144585	1509	Q6UXV4	APOOL	MICOS complex subunit MIC27	yes	yes	0	1	0	15	0															1		15.095	15.095	3	0.043409	8943	DP690-15	69.431	39.94			NaN	NaN	NaN	0	0	Median	12110000	12110000	0	17025	1509	15918	33518	81212	81212	2197	1	9606
YVELFLNSTAGASGGAYEHR	0	1	Unmodified	2141.0178	0.017781914	639	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	13.1	0.625													21			1	26.955	26.955	2;3	6.112799999999999E-80	11935	DP690-13	280.97	234.01			0.85277	0.98486	9.7548	12	0	Median	1139300000	602170000	537170000	17026	639	15919	33519;33520;33521;33522;33523;33524;33525;33526;33527;33528;33529;33530;33531;33532;33533;33534;33535;33536;33537;33538;33539;33540	81213;81214;81215;81216;81217;81218;81219;81220;81221;81222;81223;81224;81225;81226;81227;81228;81229;81230;81231;81232;81233;81234;81235;81236;81237;81238;81239;81240;81241;81242;81243;81244;81245;81246;81247;81248;81249;81250;81251;81252;81253;81254;81255;81256;81257;81258;81259;81260;81261;81262;81263;81264	81246		51	9606
YVENFGLIDGR	0	1	Unmodified	1281.6354	0.63535107	1306	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	0	0	0	15	0															1		17.893	17.893	2	0.00030117	12621	DP690-15	163.16	133.08			1.0308	1.1566	NaN	1	0	Median	67115000	34941000	32174000	17027	1306	15920	33541	81265;81266;81267;81268	81268		4	9606
YVENPSQVLNCER	0	1	Unmodified	1606.741	0.74095513	272	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	10.1	3.6			1						1	2	1	1				1	15.57	15.57	2	2.8806E-11	9150	DP690-16	184.71	137			0.77583	0.90075	18.553	5	0	Median	771190000	415640000	355550000	17028	272	15921	33542;33543;33544;33545;33546;33547;33548	81269;81270;81271;81272;81273;81274;81275;81276;81277;81278;81279;81280;81281;81282;81283;81284;81285;81286;81287;81288;81289;81290	81281		22	9606
YVEPIEDVPCGNIVGLVGVDQFLVK	1	0	Unmodified	2758.4252	0.42515387	483	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	11	0											2						23.98	23.98	2	7.2333E-10	21607	DP690-11	143.43	143.43			0.76786	0.93779	3.856	2	0	Median	65448000	36156000	29292000	17029	483	15922	33549;33550	81291;81292;81293	81292		3	9606
YVEQLLTLFNR	0	1	Unmodified	1394.7558	0.75580056	1805	Q93034	CUL5	Cullin-5	yes	yes	0	0	0	3	0			1														22.096	22.096	2	0.00017788	17633	DP690-3	123.86	123.86			1.0293	1.1433	NaN	1	0	Median	5687400	2870700	2816700	17030	1805	15923	33551	81294;81295;81296;81297	81295		4	9606
YVFLDPLAGAVTK	1	0	Unmodified	1392.7653	0.76530261	17	C4AMC7;Q6VEQ5;A8K0Z3;A8MWX3	WASH3P;WASH2P;WASH1;WASH4P	Putative WAS protein family homolog 3;WAS protein family homolog 2;WAS protein family homolog 1;Putative WAS protein family homolog 4	no	no	0	0	0	12	0												1					20.902	20.902	2	0.0035005	17052	DP690-12	88.441	76.805			1.5752	1.8935	NaN	1	0	Median	21309000	8631600	12678000	17031	17	15924	33552	81298;81299;81300	81299		3	9606
YVFTDISYSIPHR	0	1	Unmodified	1596.7936	0.79364262	1050	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	14	0														1			17.921	17.921	3	0.00012818	12864	DP690-14	110.8	77.484			0.6862	0.82408	NaN	1	0	Median	83722000	50223000	33500000	17032	1050	15925	33553	81301;81302;81303	81301		3	9606
YVIESSSHTPELAR	0	1	Unmodified	1587.7893	0.78928553	1653	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	11	0											4						13.478	13.478	2;3	7.3935E-06	7152	DP690-11	152.4	136.18			0.71248	0.81044	20.951	2	0	Median	488200000	297720000	190490000	17033	1653	15926	33554;33555;33556;33557	81304;81305;81306;81307;81308;81309;81310	81306		6	9606
YVITIEDFYSVPR	0	1	Unmodified	1600.8137	0.81370936	2418	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	2	0		1															21.373	21.373	2	6.0431E-05	15028	DP690-2	169.99	145.72			0.78821	0.80472	NaN	1	0	Median	3149400	1750100	1399300	17034	2418	15927	33558	81311;81312;81313;81314;81315;81316	81312		6	9606
YVLGDTAMQK	1	0	Oxidation (M)	1140.5485	0.5485099	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	1	0	3	0			1														12.618	12.618	2	0.060009	5426	DP690-3	68.846	36.526			0.76956	0.80434	NaN	1	0	Median	56881000	32291000	24590000	17035	5	15928	33559	81317	81317		1	9606
YVLINWVGEDVPDAR	0	1	Unmodified	1744.8784	0.87843489	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	0	11	0											1						20.851	20.851	2	9.3352E-10	17714	DP690-11	203.83	167.3			0.68349	0.74191	NaN	1	0	Median	405760000	240010000	165750000	17036	1365	15929	33560	81318;81319;81320;81321;81322	81320		5	9606
YVLINWVGEDVPDARK	1	1	Unmodified	1872.9734	0.9733979	1365	Q16643	DBN1	Drebrin	yes	yes	0	0	1	11	0											1						18.884	18.884	3	0.001165	15007	DP690-11	116.87	77.859			NaN	NaN	NaN	0	0	Median	92425000	92425000	0	17037	1365	15930	33561	81323;81324;81325	81324		3	9606
YVLNFLEVHDK	1	0	Unmodified	1375.7136	0.71360139	1140	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	11	0											1						17.988	17.988	3	0.018221	13690	DP690-11	72.34	29.622			NaN	NaN	NaN	0	0	Median	0	0	0	17038	1140	15931	33562	81326	81326		1	9606
YVLVAGITPTPLGEGK	1	0	Unmodified	1613.9029	0.90285872	1504	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	8.33	3.77			2								4						18.968	18.968	2	0.00063965	15210	DP690-11	151.13	112.41			NaN	NaN	NaN	0	0	Median	5310700	5310700	0	17039	1504	15932	33563;33564;33565;33566;33567;33568	81327;81328;81329;81330;81331;81332	81328		6	9606
YVMGNNPADLLAVDSR	0	1	Oxidation (M)	1749.8356	0.83558379	1093	Q02413	DSG1	Desmoglein-1	yes	yes	0	1	0	4	0				1													17.972	17.972	2	3.0067E-07	12368	DP690-4	162.31	127.53			NaN	NaN	NaN	0	0	Median	2536000	2536000	0	17040	1093	15933	33569	81333;81334	81334	1715	2	9606
YVMTTTTLER	0	1	Unmodified	1213.6013	0.60127375	382	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	6	0						1											14.575	14.575	2	0.026008	7668	DP690-6	72.23	39.62			1.1669	1.3334	NaN	1	0	Median	5495200	2454100	3041000	17041	382	15934	33570	81335	81335		1	9606
YVQLPADEVDTQLLQDAAR	0	1	Unmodified	2144.075	0.074962442	2455	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	yes	yes	0	0	0	16	0																1	20.292	20.292	2	1.0612E-09	15000	DP690-16	153.2	116.57			0.85535	1.004	NaN	1	0	Median	3090700	1481600	1609200	17042	2455	15935	33571	81336;81337;81338;81339	81336		4	9606
YVVVTGITPTPLGEGK	1	0	Unmodified	1629.8978	0.89777334	470	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	9	3.1			1						1		3						17.926	17.926	2	1.6334999999999999E-26	13610	DP690-11	225.55	187.83			0.8116	0.9332	22.517	2	0	Median	492570000	55440000	437130000	17043	470	15936	33572;33573;33574;33575;33576	81340;81341;81342;81343;81344;81345;81346;81347;81348;81349;81350	81340		11	9606
YVYDSAFHPDTGEK	1	0	Unmodified	1627.7155	0.71545188	2030	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	14	0														2			14.263	14.263	2;3	3.2145E-11	7859	DP690-14	181.31	138.6			0.78599	0.90724	NaN	1	0	Median	258780000	139660000	119120000	17044	2030	15937	33577;33578	81351;81352;81353;81354;81355;81356;81357	81357		7	9606
YWAQLDETVEALLR	0	1	Unmodified	1705.8675	0.86753585	238	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	11	0											2						24.591	24.591	2	0.018909	22421	DP690-11	101.95	58.646			NaN	NaN	NaN	0	0	Median	0	0	0	17045	238	15938	33579;33580	81358;81359	81359		2	9606
YWFAATVAVPLVGK	1	0	Unmodified	1520.8391	0.83913625	2013	Q9BUN8	DERL1	Derlin-1	yes	yes	0	0	0	9	0									1								21.679	21.679	2	0.0010902	16837	DP690-9	99.568	99.568			0.65511	0.83649	NaN	1	0	Median	10366000	6091400	4274300	17046	2013	15939	33581	81360;81361;81362;81363	81362		4	9606
YWLCAATGPSIK	1	0	Unmodified	1365.6751	0.67510739	1022	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	14	0														1			17.512	17.512	2	0.0013173	12315	DP690-14	102.06	73.144			0.88022	0.99039	NaN	1	0	Median	398450000	210400000	188050000	17047	1022	15940	33582	81364;81365	81365		2	9606
YWPQEAGEYAVHVLCNSEDIR	0	1	Unmodified	2535.1489	0.14887244	549	P21333	FLNA	Filamin-A	yes	yes	0	0	0	10	0.632									1	3	1						21.171	21.171	2;3	6.3599E-07	18122	DP690-10	136.46	123.93			0.74804	0.88999	8.4791	4	0	Linear	322080000	184970000	137110000	17048	549	15941	33583;33584;33585;33586;33587	81366;81367;81368;81369;81370;81371;81372;81373;81374;81375;81376;81377;81378	81369		12	9606
YYADGEDAYAMK	1	0	Oxidation (M)	1411.5602	0.56019679	718	P41227;Q9BSU3	NAA10;NAA11	N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11	yes	no	0	1	0	15	0															1		13.06	13.06	2	0.015355	6128	DP690-15	75.509	66.175			1.5006	1.7669	NaN	1	0	Median	8958300	2887200	6071000	17049	718	15942	33588	81379;81380	81380	1049	2	9606
YYAVNFPMR	0	1	Unmodified	1159.5485	0.54845032	1788	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	12	0												1					17.598	17.598	2	0.0071139	12551	DP690-12	92.467	49.868			0.71857	0.85615	NaN	1	0	Median	32934000	19007000	13928000	17050	1788	15943	33589	81381;81382	81381		2	9606
YYAVNYPLR	0	1	Unmodified	1157.5869	0.58694431	1222	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	12	0												1					16.181	16.181	2	0.0012647	10556	DP690-12	139.92	103.36			NaN	NaN	NaN	0	0	Median	46862000	46862000	0	17051	1222	15944	33590	81383;81384	81383		2	9606
YYDDTYPSVK	1	0	Unmodified	1249.5503	0.55028404	954	P61923	COPZ1	Coatomer subunit zeta-1	yes	yes	0	0	0	8	0								1									14.11	14.11	2	0.0095843	7071	DP690-8	109.48	79.403			NaN	NaN	NaN	0	0	Median	3220600	0	3220600	17052	954	15945	33591	81385	81385		1	9606
YYEAADTVTQFDNVR	0	1	Unmodified	1790.8111	0.81114318	1710	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	10.5	0.5										1	1						17.36	17.36	2	1.5675E-15	12907	DP690-10	240.85	220.38			0.81946	0.96746	NaN	1	0	Median	248160000	133570000	114590000	17053	1710	15946	33592;33593	81386;81387;81388;81389;81390	81387		5	9606
YYEDNKQFFGR	1	1	Unmodified	1465.6626	0.66262845	2349	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	yes	yes	0	0	1	16	0																1	14.167	14.167	3	0.00047237	7485	DP690-16	105.17	69.455			0.65192	0.73868	NaN	1	0	Median	15107000	8198600	6908600	17054	2349	15947	33594	81391;81392;81393;81394	81392		4	9606
YYEGYYAAGPGYGGR	0	1	Unmodified	1642.7052	0.70522155	1806	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	9	3.56				1							1	1					15.537	15.537	2	1.9975E-05	9197	DP690-4	148.91	128.14			0.92982	1.0962	11.574	2	0	Median	48745000	21304000	27441000	17055	1806	15948	33595;33596;33597	81395;81396;81397;81398;81399;81400;81401;81402;81403;81404	81403		10	9606
YYEVSADKPHLSYLTEYR	1	1	Unmodified	2233.0691	0.069148783	1792	Q92828	CORO2A	Coronin-2A	yes	yes	0	0	1	12	0												1					15.974	15.974	3	3.8057E-05	10421	DP690-12	121.03	103.74			0.67866	0.83569	NaN	1	0	Median	53650000	26895000	26755000	17056	1792	15949	33598	81405;81406;81407	81406		3	9606
YYFSHDTD	0	0	Unmodified	1046.3981	0.39814049	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	3	0			1														13.786	13.786	2	0.069057	6981	DP690-3	89.673	78.857			NaN	NaN	NaN	0	0	Median	0	0	0	17057	5	15950	33599	81408;81409	81408		2	9606
YYGINDPVADK	1	0	Unmodified	1253.5928	0.59281755	2242	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	0	0	13	0													1				15.694	15.694	2	0.021253	9631	DP690-13	98.048	64.786			NaN	NaN	NaN	0	0	Median	39586000	0	39586000	17058	2242	15951	33600	81410	81410		1	9606
YYGLQILENVIK	1	0	Unmodified	1451.8024	0.8024164	128	O14980	XPO1	Exportin-1	yes	yes	0	0	0	7.67	3.4			1						1		1						22.71	22.71	2	3.9062E-10	20186	DP690-11	228.2	194.12			0.67755	0.82654	NaN	1	0	Median	30533000	21760000	8773200	17059	128	15952	33601;33602;33603	81411;81412;81413;81414;81415;81416;81417	81412		7	9606
YYHGPTPIQSLQYATSQDIINSFQSIR	0	1	Unmodified	3126.5411	0.54106334	646	P32780	GTF2H1	General transcription factor IIH subunit 1	yes	yes	0	0	0	12	0												1					22.767	22.767	3	6.8021E-17	19172	DP690-12	162.75	162.75			0.75583	0.92487	NaN	1	0	Median	4910900	2463700	2447200	17060	646	15953	33604	81418;81419;81420	81420		3	9606
YYIQNGIQSFMQNYSSIDVLLHQSR	0	1	Oxidation (M)	3019.4498	0.44980549	1046	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	9.5	0.5									1	1							21.541	21.541	3	6.4577E-06	16622	DP690-9	126.55	126.55			0.94484	1.1461	14.919	2	0	Median	102910000	52230000	50678000	17061	1046	15954	33605;33606	81421;81422;81423;81424;81425;81426;81427;81428	81425	1647	8	9606
YYITIIDAPGHR	0	1	Unmodified	1417.7354	0.73539946	1118	Q05639	EEF1A2	Elongation factor 1-alpha 2	yes	yes	0	0	0	10	3.32					1				1				2				16.429	16.429	2;3	4.4171E-05	10671	DP690-13	134.75	90.142			0.82385	0.9336	17.387	4	0	Median	665780000	358650000	307130000	17062	1118	15955	33607;33608;33609;33610	81429;81430;81431;81432;81433;81434;81435;81436;81437;81438;81439	81431		11	9606
YYMNQVEETR	0	1	Oxidation (M)	1347.5765	0.57651556	863	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	1	0	3	0			1														11.661	11.661	2	0.00062947	4208	DP690-3	122.13	103.4			0.90593	1.0066	NaN	1	0	Median	5733700	3612100	2121600	17063	863	15956	33611	81440;81441;81442;81443;81444	81440	1308	5	9606
YYSFFDLNPK	1	0	Unmodified	1292.6077	0.60773933	1818	Q96AC1;Q9BQL6	FERMT2;FERMT1	Fermitin family homolog 2;Fermitin family homolog 1	yes	no	0	0	0	3	0			1														20.335	20.335	2	0.030262	15618	DP690-3	70.816	15.355			0.92408	0.97437	NaN	1	0	Median	8250000	4182700	4067200	17064	1818	15957	33612	81445	81445		1	9606
YYTEFPTVLDITAEDPSK	1	0	Unmodified	2087.9939	0.99391815	119	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	5	0					1												21.679	21.679	2	1.3493E-10	16448	DP690-5	161.21	147.63			0.86189	0.86052	NaN	1	0	Median	34015000	21373000	12642000	17065	119	15958	33613	81446;81447;81448;81449;81450	81448		5	9606
YYTSASGDEMVSLK	1	0	Oxidation (M)	1565.6919	0.69193925	409	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	1	0	3	0			1														14.185	14.185	2	0.057891	7554	DP690-3	81.431	11.781			NaN	NaN	NaN	0	0	Median	7748500	0	7748500	17066	409	15959	33614	81451;81452	81452		2	9606
YYVTIIDAPGHR	0	1	Unmodified	1403.7197	0.7197494	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	11.1	3.58			1	1	2	1	1	2	2	2	2	2	9	2	4	2	16.816	16.816	2;3	2.5838E-11	9488	DP690-14	186.16	118.26			0.87721	0.52661	18.449	25	0	Linear	26834000000	14119000000	12715000000	17067	1031	15960	33615;33616;33617;33618;33619;33620;33621;33622;33623;33624;33625;33626;33627;33628;33629;33630;33631;33632;33633;33634;33635;33636;33637;33638;33639;33640;33641;33642;33643;33644;33645;33646;33647	81453;81454;81455;81456;81457;81458;81459;81460;81461;81462;81463;81464;81465;81466;81467;81468;81469;81470;81471;81472;81473;81474;81475;81476;81477;81478;81479;81480;81481;81482;81483;81484;81485;81486;81487;81488;81489;81490;81491;81492;81493;81494;81495;81496;81497;81498;81499;81500;81501;81502;81503;81504;81505;81506;81507;81508;81509;81510;81511;81512;81513;81514;81515;81516;81517;81518;81519;81520;81521;81522;81523;81524;81525;81526;81527;81528;81529;81530;81531;81532;81533;81534;81535;81536;81537;81538;81539;81540;81541;81542;81543;81544;81545;81546;81547;81548;81549;81550;81551;81552	81508		100	9606
YYVTIIDAPGHRDFIK	1	1	Unmodified	1906.9941	0.99413335	1031	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	13.3	0.471													2	1			16.297	16.297	3;4	8.5366E-08	10554	DP690-13	171.36	127.67			1.0074	1.111	9.4157	3	0	Median	327220000	159220000	168000000	17068	1031	15961	33648;33649;33650	81553;81554;81555;81556;81557;81558;81559;81560;81561;81562	81554		10	9606
YYYSVLRMREVEGEK	1	2	Oxidation (M)	1936.9353	0.93529784	2545				yes	yes	0	1	2	10	0										1							20.243	20.243	2	0.015497	17171	DP690-10	59.542	17.067	+		0.76264	0.88203	NaN	1	0	Median	66134000	26822000	39313000	17069	2545	15962	33651	81563;81564	81563	2972	2	9606
