pLink MS/MS Analysis Report

2025-1-8 automatically created by pLink 3.0.11

1. Cross-Linked Results

Table 1 Identification of Cross-Linked Results Under 1% FDR at Spectrum Level.

#(Spectra) | #(Peptide Pairs) | #(Linked Sites)
170 | 140 | 213

2. All Results

Table 2 Identification of Spectra Under 1% FDR Control.

Types | Cross-Linked Spectra | Loop-Linked Spectra | Mono-Linked Spectra | Regular Spectra
| Counts | 170 | 0 | 190 | 1175
Percent | 11.1% | 0.0% | 12.4% | 76.5%

Table 3 Identification of Peptides (Pairs) Under 1% FDR Control.

Types | Cross-Linked Peptide Pairs | Loop-Linked Peptides | Mono-Linked Peptides | Regular Peptides
| Counts | 140 | 0 | 151 | 643
Percent | 15.0% | 0.0% | 16.2% | 68.8%

Table 4 Identification of Linked Sites Under 1% FDR Control.

Types | Cross-Linked Sites (Group) | Loop-Linked Sites (Group)
| Counts | 213 (136) | 0 (0)
Percent | 100.0% | 0.0%

3. FDR Curve

Figure 1 FDR Curve.

4. Precursor Error Distribution

Figure 2 All Precursor Error Distribution.

Figure 3 Filtered Precursor Error Distribution.

5. Running Time

Table 5 Running Time of Identification

Start Time | Wed Jan 08 13:51:38 2025
End Time | Wed Jan 08 14:22:00 2025
Time Cost | 1821.94s