pLink MS/MS Analysis Report

2025-1-8 automatically created by pLink 3.0.11

1. Cross-Linked Results

Table 1 Identification of Cross-Linked Results Under 1% FDR at Spectrum Level.

#(Spectra) | #(Peptide Pairs) | #(Linked Sites)
168 | 132 | 210

2. All Results

Table 2 Identification of Spectra Under 1% FDR Control.

Types | Cross-Linked Spectra | Loop-Linked Spectra | Mono-Linked Spectra | Regular Spectra
| Counts | 168 | 62 | 188 | 1463
Percent | 8.9% | 3.3% | 10.0% | 77.8%

Table 3 Identification of Peptides (Pairs) Under 1% FDR Control.

Types | Cross-Linked Peptide Pairs | Loop-Linked Peptides | Mono-Linked Peptides | Regular Peptides
| Counts | 132 | 47 | 144 | 756
Percent | 12.2% | 4.4% | 13.3% | 70.1%

Table 4 Identification of Linked Sites Under 1% FDR Control.

Types | Cross-Linked Sites (Group) | Loop-Linked Sites (Group)
| Counts | 210 (128) | 53 (44)
Percent | 79.8% | 20.2%

3. FDR Curve

Figure 1 FDR Curve.

4. Precursor Error Distribution

Figure 2 All Precursor Error Distribution.

Figure 3 Filtered Precursor Error Distribution.

5. Running Time

Table 5 Running Time of Identification

Start Time | Wed Jan 08 13:53:30 2025
End Time | Wed Jan 08 14:21:07 2025
Time Cost | 1656.94s