pLink MS/MS Analysis Report

2024-12-8 automatically created by pLink 3.0.11

1. Cross-Linked Results

Table 1 Identification of Cross-Linked Results Under 1% FDR at Spectrum Level.

#(Spectra) | #(Peptide Pairs) | #(Linked Sites)
1574 | 1055 | 1849

2. All Results

Table 2 Identification of Spectra Under 1% FDR Control.

Types | Cross-Linked Spectra | Loop-Linked Spectra | Mono-Linked Spectra | Regular Spectra
| Counts | 1574 | 495 | 1546 | 4616
Percent | 19.1% | 6.0% | 18.8% | 56.1%

Table 3 Identification of Peptides (Pairs) Under 1% FDR Control.

Types | Cross-Linked Peptide Pairs | Loop-Linked Peptides | Mono-Linked Peptides | Regular Peptides
| Counts | 1055 | 370 | 1127 | 2730
Percent | 20.0% | 7.0% | 21.3% | 51.7%

Table 4 Identification of Linked Sites Under 1% FDR Control.

Types | Cross-Linked Sites (Group) | Loop-Linked Sites (Group)
| Counts | 1849 (976) | 346 (312)
Percent | 84.2% | 15.8%

3. FDR Curve

Figure 1 FDR Curve.

4. Precursor Error Distribution

Figure 2 All Precursor Error Distribution.

Figure 3 Filtered Precursor Error Distribution.

5. Running Time

Table 5 Running Time of Identification

Start Time | Sat Dec 07 21:48:55 2024
End Time | Sun Dec 08 00:16:08 2024
Time Cost | 8832.77s