pLink MS/MS Analysis Report

2024-12-8 automatically created by pLink 3.0.11

1. Cross-Linked Results

Table 1 Identification of Cross-Linked Results Under 1% FDR at Spectrum Level.

#(Spectra) | #(Peptide Pairs) | #(Linked Sites)
1574 | 1082 | 1808

2. All Results

Table 2 Identification of Spectra Under 1% FDR Control.

Types | Cross-Linked Spectra | Loop-Linked Spectra | Mono-Linked Spectra | Regular Spectra
| Counts | 1574 | 53 | 1356 | 4209
Percent | 21.9% | 0.7% | 18.9% | 58.5%

Table 3 Identification of Peptides (Pairs) Under 1% FDR Control.

Types | Cross-Linked Peptide Pairs | Loop-Linked Peptides | Mono-Linked Peptides | Regular Peptides
| Counts | 1082 | 47 | 1000 | 2510
Percent | 23.3% | 1.0% | 21.6% | 54.1%

Table 4 Identification of Linked Sites Under 1% FDR Control.

Types | Cross-Linked Sites (Group) | Loop-Linked Sites (Group)
| Counts | 1808 (1004) | 54 (45)
Percent | 97.1% | 2.9%

3. FDR Curve

Figure 1 FDR Curve.

4. Precursor Error Distribution

Figure 2 All Precursor Error Distribution.

Figure 3 Filtered Precursor Error Distribution.

5. Running Time

Table 5 Running Time of Identification

Start Time | Sun Dec 08 17:22:49 2024
End Time | Sun Dec 08 19:29:32 2024
Time Cost | 7603.76s