pLink MS/MS Analysis Report

2025-4-2 automatically created by pLink 3.0.16

1. Cross-Linked Results

Table 1 Identification of Cross-Linked Results Under 1% FDR at Peptide Level.

#(Spectra) | #(Peptide Pairs) | #(Linked Sites)
3162 | 2018 | 4186

2. All Results

Table 2 Identification of Spectra Under 1% FDR Control.

Types | Cross-Linked Spectra | Loop-Linked Spectra | Mono-Linked Spectra | Regular Spectra
| Counts | 3162 | 411 | 4364 | 25650
Percent | 9.4% | 1.2% | 13.0% | 76.4%

Table 3 Identification of Peptides (Pairs) Under 1% FDR Control.

Types | Cross-Linked Peptide Pairs | Loop-Linked Peptides | Mono-Linked Peptides | Regular Peptides
| Counts | 2018 | 327 | 3041 | 10818
Percent | 12.5% | 2.0% | 18.8% | 66.8%

Table 4 Identification of Linked Sites Under 1% FDR Control.

Types | Cross-Linked Sites (Group) | Loop-Linked Sites (Group)
| Counts | 4186 (1764) | 319 (280)
Percent | 92.9% | 7.1%

3. FDR Curve

Figure 1 FDR Curve.

4. Precursor Error Distribution

Figure 2 All Precursor Error Distribution.

Figure 3 Filtered Precursor Error Distribution.

5. Running Time

Table 5 Running Time of Identification

Start Time | Wed Apr 02 13:37:44 2025
End Time | Wed Apr 02 13:38:57 2025
Time Cost | 72.758s