pLink MS/MS Analysis Report

2025-4-2 automatically created by pLink 3.0.16

1. Cross-Linked Results

Table 1 Identification of Cross-Linked Results Under 1% FDR at Peptide Level.

#(Spectra) | #(Peptide Pairs) | #(Linked Sites)
2883 | 1813 | 3466

2. All Results

Table 2 Identification of Spectra Under 1% FDR Control.

Types | Cross-Linked Spectra | Loop-Linked Spectra | Mono-Linked Spectra | Regular Spectra
| Counts | 2883 | 420 | 3615 | 22707
Percent | 9.7% | 1.4% | 12.2% | 76.6%

Table 3 Identification of Peptides (Pairs) Under 1% FDR Control.

Types | Cross-Linked Peptide Pairs | Loop-Linked Peptides | Mono-Linked Peptides | Regular Peptides
| Counts | 1813 | 329 | 2504 | 9542
Percent | 12.8% | 2.3% | 17.6% | 67.3%

Table 4 Identification of Linked Sites Under 1% FDR Control.

Types | Cross-Linked Sites (Group) | Loop-Linked Sites (Group)
| Counts | 3466 (1603) | 312 (280)
Percent | 91.7% | 8.3%

3. FDR Curve

Figure 1 FDR Curve.

4. Precursor Error Distribution

Figure 2 All Precursor Error Distribution.

Figure 3 Filtered Precursor Error Distribution.

5. Running Time

Table 5 Running Time of Identification

Start Time | Wed Apr 02 13:28:13 2025
End Time | Wed Apr 02 13:29:22 2025
Time Cost | 68.897s