pLink MS/MS Analysis Report

2025-1-7 automatically created by pLink 3.0.11

1. Cross-Linked Results

Table 1 Identification of Cross-Linked Results Under 1% FDR at Spectrum Level.

#(Spectra) | #(Peptide Pairs) | #(Linked Sites)
286 | 239 | 388

2. All Results

Table 2 Identification of Spectra Under 1% FDR Control.

Types | Cross-Linked Spectra | Loop-Linked Spectra | Mono-Linked Spectra | Regular Spectra
| Counts | 286 | 114 | 211 | 3314
Percent | 7.3% | 2.9% | 5.4% | 84.4%

Table 3 Identification of Peptides (Pairs) Under 1% FDR Control.

Types | Cross-Linked Peptide Pairs | Loop-Linked Peptides | Mono-Linked Peptides | Regular Peptides
| Counts | 239 | 90 | 161 | 1770
Percent | 10.6% | 4.0% | 7.1% | 78.3%

Table 4 Identification of Linked Sites Under 1% FDR Control.

Types | Cross-Linked Sites (Group) | Loop-Linked Sites (Group)
| Counts | 388 (225) | 89 (75)
Percent | 81.3% | 18.7%

3. FDR Curve

Figure 1 FDR Curve.

4. Precursor Error Distribution

Figure 2 All Precursor Error Distribution.

Figure 3 Filtered Precursor Error Distribution.

5. Running Time

Table 5 Running Time of Identification

Start Time | Tue Jan 07 14:26:40 2025
End Time | Tue Jan 07 14:46:49 2025
Time Cost | 1208.69s