pLink MS/MS Analysis Report

2025-1-1 automatically created by pLink 3.0.11

1. Cross-Linked Results

Table 1 Identification of Cross-Linked Results Under 1% FDR at Spectrum Level.

#(Spectra) | #(Peptide Pairs) | #(Linked Sites)
312 | 247 | 333

2. All Results

Table 2 Identification of Spectra Under 1% FDR Control.

Types | Cross-Linked Spectra | Loop-Linked Spectra | Mono-Linked Spectra | Regular Spectra
| Counts | 312 | 57 | 380 | 2147
Percent | 10.8% | 2.0% | 13.1% | 74.1%

Table 3 Identification of Peptides (Pairs) Under 1% FDR Control.

Types | Cross-Linked Peptide Pairs | Loop-Linked Peptides | Mono-Linked Peptides | Regular Peptides
| Counts | 247 | 48 | 280 | 1139
Percent | 14.4% | 2.8% | 16.3% | 66.5%

Table 4 Identification of Linked Sites Under 1% FDR Control.

Types | Cross-Linked Sites (Group) | Loop-Linked Sites (Group)
| Counts | 333 (237) | 51 (43)
Percent | 86.7% | 13.3%

3. FDR Curve

Figure 1 FDR Curve.

4. Precursor Error Distribution

Figure 2 All Precursor Error Distribution.

Figure 3 Filtered Precursor Error Distribution.

5. Running Time

Table 5 Running Time of Identification

Start Time | Tue Dec 31 20:36:06 2024
End Time | Wed Jan 01 02:00:31 2025
Time Cost | 19465.2s